RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2379
(585 letters)
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 427 bits (1100), Expect = e-145
Identities = 178/494 (36%), Positives = 284/494 (57%), Gaps = 9/494 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFI 59
G ++++R + G+ G + YN + TAH +MIFF+ MP ++ G N++
Sbjct: 26 AGMVGTALSLLIRAELG-QPGTLLG--DDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWL 82
Query: 60 VPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVG 119
VPL IGA D+AFP +NN+SFW+ +L++ S + A TGW YPPL+G G
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 120 VDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVL 179
VD I+SL +AG+ ++L IN I TII M+ P M P+F W+ + T +L++ + PVL
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVL 202
Query: 180 TSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239
+ + + DR + T FF GG+ ++Y +L W +GHPEVYIL+LP FG+ S +V+ +S
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYS 262
Query: 240 SKR-LFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFN 298
K+ FGY MV+A + I L +IVW HH FT+G + A+F TMII+IPTG K+F+
Sbjct: 263 GKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 299 WLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVII 358
WL T++ G I++ ++W +GF+ F +GG+ G++LA + + +LH++ ++VAHFH V+
Sbjct: 323 WLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS 382
Query: 359 GGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSH 418
G +F +M G +WFP GY L W K F +G + F P + LG G+ RR S
Sbjct: 383 MGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSD 442
Query: 419 FEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSS 478
+ D + +W I++ G+ + ++ + + ++ + ++ LEW
Sbjct: 443 YPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKR---EVLTVDLTTTNLEWLNGC 498
Query: 479 PPPVYNFAFIPLIH 492
PPP + F ++
Sbjct: 499 PPPYHTFEEPTYVN 512
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 403 bits (1038), Expect = e-135
Identities = 178/517 (34%), Positives = 276/517 (53%), Gaps = 37/517 (7%)
Query: 1 MLFRGFTDAVMMRLQ------------------------QAISFGSSFGYLPPEHYNQIF 36
+ V MR++ +N +
Sbjct: 27 VGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGHLWNVMI 86
Query: 37 TAHGVIMIFFVAMP-LVTGIINFIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFI 95
T HG++M+FFV +P L G N+ +PL IGA D+AFP +NNLS+W+ G L + SLF
Sbjct: 87 TGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAVASLFA 146
Query: 96 GEF-----ASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRA 150
+ GW+ YPPL G D I+++ ++G ++L INMI T + MRA
Sbjct: 147 PGGNGQLGSGIGWVLYPPL--STSESGYSTDLAIFAVHLSGASSILGAINMITTFLNMRA 204
Query: 151 PGMKLMNMPIFTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVN 210
PGM + +P+F W+ T LI+ A PVL + + DR GT FF GG+ ++Y +
Sbjct: 205 PGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLLTDRNFGTTFFQPSGGGDPVLYQH 264
Query: 211 LIWIWGHPEVYILVLPVFGIFSEVVSTFSSKRLFGYSSMVYATVVITLLSYIVWLHHFFT 270
++W +GHPEVYI+VLP FGI S V++TF+ K +FGY MVYA V I +L ++VW HH +T
Sbjct: 265 ILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFVVWAHHMYT 324
Query: 271 MGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGGMA 330
G ++F + TM+I++PTG KIF+W+ TM+ G I + P+LW +GF+ F +GG+
Sbjct: 325 AGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVT 384
Query: 331 GVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSF 390
G++L+ + + H++ ++VAHFH V+ G +FG+ +GI +W K G + + GK F
Sbjct: 385 GIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHF 444
Query: 391 WFWLIGFYVAFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLI 450
W +G + F P + LG G+ RR + + + W +++ G L L F+ +
Sbjct: 445 WMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFATWNFVSSLGAFLSFASFLFFLGVIF 503
Query: 451 VSYRKRHTLIDITGDPWN--GRTLEWSTSSPPPVYNF 485
+ + + WN TLEW+ +SPPP + F
Sbjct: 504 YTLTRGA--RVTANNYWNEHADTLEWTLTSPPPEHTF 538
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 372 bits (956), Expect = e-124
Identities = 343/485 (70%), Positives = 406/485 (83%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 17 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 76
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 77 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 136
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 137 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 196
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 197 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 256
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 257 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 316
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 317 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 376
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 377 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 436
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 437 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 496
Query: 481 PVYNF 485
P YNF
Sbjct: 497 PFYNF 501
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 243 bits (622), Expect = 7e-74
Identities = 96/519 (18%), Positives = 173/519 (33%), Gaps = 54/519 (10%)
Query: 1 MLFRGFTDAVMMRLQQA---ISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIIN 57
L G L + Y Q T HGV+ I+
Sbjct: 18 ALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMV 77
Query: 58 FIVPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPG 117
++ ++ R L LS+WM G ++ + L E A+ + YPPL G
Sbjct: 78 YLPARELNMRP--NMGLMWLSWWMAFIGLVVAALPLLANE-ATVLYTFYPPLKGHWA-FY 133
Query: 118 VGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFP 177
+G ++ S I ++ + + P+ T+ A+ ++ A
Sbjct: 134 LGASVFVLS--------TWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASL 185
Query: 178 VLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVST 237
L L L G G + ++ L W GHP VY +LP + I ++
Sbjct: 186 GLVLEAVLFLLPWSFGLVE-----GVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPK 240
Query: 238 FSSKRLFGYSSMVYATVVITLLSYIVWLHHFFT-MGSGANVNAFFGITTMIISIPT---- 292
+ +L A ++ LLS V HH F G + T+ +++P+
Sbjct: 241 QAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTA 300
Query: 293 ---------------GAKIFNWLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVP 337
G +F W+ + F P+L +GF+ GG G++ A
Sbjct: 301 FTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFI----PGGAGGIVNASF 356
Query: 338 AANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCS---FWFWL 394
++++HN+ ++ HFH + V M + + P G + + W W
Sbjct: 357 TLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWF 416
Query: 395 IGFYVAFMPLYILGFMGVTRRMSHFEDI----SLQIWFQIAAFGTLLIAMGILSFIIQLI 450
+G + + L+ G + V RR + + +++ + +L FI L
Sbjct: 417 LGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLF 476
Query: 451 VSYRKRHTLIDITGDPWNGRTLEWSTSSPPPVYNFAFIP 489
R ++ P S P +
Sbjct: 477 SVLLSRERKPELAEAPL---PFAEVISGPEDRRLVLAMD 512
Score = 26.9 bits (59), Expect = 8.1
Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 16/162 (9%)
Query: 314 ILWTIGFMITFVIGGMAGVI----LAVPAANFLLHNSL--------FLVAHFHNVIIGGV 361
+ + + + ++G + G A LL L L H I
Sbjct: 9 LYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFT 68
Query: 362 LFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFED 421
+ + Y + + S+W IG VA +PL + F
Sbjct: 69 QLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPL----LANEATVLYTFYP 124
Query: 422 ISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDIT 463
W +++ + +I+ + K +T
Sbjct: 125 PLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVT 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.145 0.476
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,417,871
Number of extensions: 119510
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 62
Length of query: 585
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,171,896
Effective search space: 580088520
Effective search space used: 580088520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.3 bits)