RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy238
(218 letters)
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 93.5 bits (233), Expect = 1e-23
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
D + G +V ++ + + E++ + E L +L HPNIVK + + D +
Sbjct: 13 RDKKTGKKVAIKIIKKEDSSSLL---EELLREIEILKKLNHPNIVKLYGVFED----ENH 65
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
+ + EY GSLK LK N KL R QIL L YLHS IIH +L
Sbjct: 66 LYLVMEYCEGGSLKDLLKE---NEGKLSEDEILRILLQILEGLEYLHSN--GIIHRDLKP 120
Query: 121 DTIFIQH-NGLVKIG 134
+ I + NG VK+
Sbjct: 121 ENILLDSDNGKVKLA 135
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 83.4 bits (207), Expect = 2e-19
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
+D + G + V+ S + + + E +++ L+ L+HPNIV++ Y ++ +K
Sbjct: 20 LDKDTGELMAVKSVELSG--DSEEELEALEREIRILSSLQHPNIVRY--YGSERDEEKNT 75
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
+ EY+S GSL LK+ KLP +++ QIL L+YLHS I+H ++
Sbjct: 76 LNIFLEYVSGGSLSSLLKK----FGKLPEPVIRKYTRQILEGLAYLHSNG--IVHRDIKG 129
Query: 121 DTIFIQHNGLVKI---GCDTYTHTIENKKYLSATRQT 154
I + +G+VK+ GC IE + + R T
Sbjct: 130 ANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 77.6 bits (192), Expect = 2e-17
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 19 RKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
+K K E+I + + L +L+HPNIV+ + D D+ ++ + EY G L LK
Sbjct: 34 KKKIKKDRERILREIKILKKLKHPNIVRLY----DVFEDEDKLYLVMEYCEGGDLFDLLK 89
Query: 79 RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ R L + + QILSAL YLHS I+H +L + I + +G VK+
Sbjct: 90 KRGR----LSEDEARFYLRQILSALEYLHSKG--IVHRDLKPENILLDEDGHVKLA 139
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 73.7 bits (182), Expect = 6e-16
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 34 ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
+ +L HPNIV+ T +P + +TEYM G L FL++ KL L
Sbjct: 53 SIMKKLSHPNIVRLLGVCTQ---GEP-LYIVTEYMPGGDLLDFLRKHGE---KLTLKDLL 105
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ QI + YL S +H +L + N +VKI
Sbjct: 106 QMALQIAKGMEYLESK--NFVHRDLAARNCLVTENLVVKIS 144
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 72.9 bits (180), Expect = 1e-15
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
+G V E+ S + K +E+ + +V + L +L HPNI+K++ ++ +K ++
Sbjct: 21 RKSDGKLYVLKEIDLSNM-SEKEREDALNEV-KILKKLNHPNIIKYY----ESFEEKGKL 74
Query: 62 IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
+ EY G L Q +K+ K+ K P W Q+ AL YLHS I+H ++
Sbjct: 75 CIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK--ILHRDIKPQ 132
Query: 122 TIFIQHNGLVKIG 134
IF+ NGLVK+G
Sbjct: 133 NIFLTSNGLVKLG 145
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 72.2 bits (178), Expect = 2e-15
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
Q E+ + + +L+HPN+VK T+ ++P I + EYM G L +L++ +
Sbjct: 44 QIEEFLREARIMRKLDHPNVVKLLGVCTE---EEPLYI-VMEYMEGGDLLSYLRKNR--- 96
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
KL LS + QI + YL S IH +L + N +VKI
Sbjct: 97 PKLSLSDLLSFALQIARGMEYLESK--NFIHRDLAARNCLVGENLVVKIS 144
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 72.0 bits (177), Expect = 3e-15
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 15 QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
Q ++ K K +++ + L L+HPN+VK+ Y + H +K V EY S G+L+
Sbjct: 36 QDNDPKTIKEIADEM----KVLELLKHPNLVKY--YGVEVHREK--VYIFMEYCSGGTLE 87
Query: 75 QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ L + + L + + Q+L L+YLHS I+H ++ IF+ HNG++K+G
Sbjct: 88 ELL----EHGRILDEHVIRVYTLQLLEGLAYLHSHG--IVHRDIKPANIFLDHNGVIKLG 141
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 71.8 bits (177), Expect = 3e-15
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 24 AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN 83
Q E+ + + +L+HPNIVK T+ ++P +I + EYM G L +L++ +
Sbjct: 43 QQIEEFLREARIMRKLDHPNIVKLLGVCTE---EEPLMI-VMEYMPGGDLLDYLRKNRPK 98
Query: 84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
L LS + QI + YL S IH +L + N +VKI
Sbjct: 99 E--LSLSDLLSFALQIARGMEYLESK--NFIHRDLAARNCLVGENLVVKIS 145
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 69.2 bits (170), Expect = 3e-14
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
V+++ + S++ +E +I L +L HPNIV+ + D K + + E
Sbjct: 29 VKILKKRSEKSKKDQTARREIRI------LRRLSHPNIVRLIDAFED----KDHLYLVME 78
Query: 67 YMSSGSLKQFLKRTKRNVKKLPLSAW--KRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
Y G L +L + PLS K+ QIL L YLHS IIH +L + I
Sbjct: 79 YCEGGDLFDYL------SRGGPLSEDEAKKIALQILRGLEYLHSNG--IIHRDLKPENIL 130
Query: 125 IQHNGLVKIGCD 136
+ NG+VKI D
Sbjct: 131 LDENGVVKI-AD 141
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 68.0 bits (167), Expect = 8e-14
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 15 QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
Q S K + + I Q + L L+HPNIVK+ + + I EY +GSL+
Sbjct: 32 QISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI----GSIETSDSLYIILEYAENGSLR 87
Query: 75 QFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
Q +K+ P S + Q+L L+YLH +IH ++ I +G+VK+
Sbjct: 88 QIIKKF----GPFPESLVAVYVYQVLQGLAYLHEQG--VIHRDIKAANILTTKDGVVKL 140
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 65.6 bits (161), Expect = 6e-13
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLS----A 91
+ +L HPN+V+ T + ++ EYM G L +L++++ S
Sbjct: 50 MKKLGHPNVVRL--LGVCTEEEPLYLVL--EYMEGGDLLDYLRKSRPVFPSPEKSTLSLK 105
Query: 92 WK-RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ QI + YL S +H +L + + +VKI
Sbjct: 106 DLLSFAIQIAKGMEYLASK--KFVHRDLAARNCLVGEDLVVKIS 147
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 65.3 bits (160), Expect = 7e-13
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Query: 6 GVEVVWNEVQFSERKNFKAQEEKIQQVFE-N-LTQLEHPNIVKFHRYWTDTHNDKPRVIF 63
G +VW E+ + +EK Q V E N L +L+HPNIV RY+ + + ++
Sbjct: 25 GKILVWKEIDYGNMTE----KEKQQLVSEVNILRELKHPNIV---RYYDRIIDRSNQTLY 77
Query: 64 I-TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPP---IIHGNLT 119
I EY G L Q +++ K+ K + R +Q+L AL H+ S P ++H +L
Sbjct: 78 IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK 137
Query: 120 CDTIFIQHNGLVKIG 134
IF+ N VK+G
Sbjct: 138 PANIFLDANNNVKLG 152
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 60.1 bits (146), Expect = 4e-11
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 3 TEEGVEVVWNEV---QFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKP 59
TE+ VVW EV + SE++ A E L+ L+HPNI+ ++ ++ D
Sbjct: 22 TEDDSLVVWKEVNLTRLSEKERRDALNE-----IVILSLLQHPNIIAYYNHFMDD----- 71
Query: 60 RVIFIT-EYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNL 118
+ I EY + G+L + R K + + + W + QI+SA+SY+H I+H ++
Sbjct: 72 NTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLW--YLFQIVSAVSYIHKAG--ILHRDI 127
Query: 119 TCDTIFIQHNGLVKIG 134
IF+ GL+K+G
Sbjct: 128 KTLNIFLTKAGLIKLG 143
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 59.4 bits (145), Expect = 9e-11
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 23/119 (19%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L+HPNIVK D + + ++ + EY LK++L + L + K
Sbjct: 52 LKELKHPNIVKLL----DVIHTERKLYLVFEYCDM-DLKKYLDKRPG---PLSPNLIKSI 103
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD------------TYTHTI 142
Q+L L+Y HS I+H +L I I +G++K+ D TYTH +
Sbjct: 104 MYQLLRGLAYCHSHR--ILHRDLKPQNILINRDGVLKL-ADFGLARAFGIPLRTYTHEV 159
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 58.7 bits (143), Expect = 2e-10
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 25 QEEKIQQVF---ENLTQLE-HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
+E+K++ V E LT+L HP I+K + T D+ + F+ EY +G L Q++++
Sbjct: 41 KEKKVKYVKIEKEVLTRLNGHPGIIKLY----YTFQDEENLYFVLEYAPNGELLQYIRK- 95
Query: 81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
L + + ++IL AL YLHS IIH +L + I + + +KI
Sbjct: 96 ---YGSLDEKCTRFYAAEILLALEYLHSKG--IIHRDLKPENILLDKDMHIKI 143
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 57.6 bits (140), Expect = 4e-10
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 21 NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
K ++EKI + L + +HPNIVK++ ++ K + + E+ S GSLK LK T
Sbjct: 36 ESKEKKEKIINEIQILKKCKHPNIVKYY----GSYLKKDELWIVMEFCSGGSLKDLLKST 91
Query: 81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ L S C ++L L YLHS IIH ++ I + +G VK+
Sbjct: 92 NQ---TLTESQIAYVCKELLKGLEYLHSNG--IIHRDIKAANILLTSDGEVKL 139
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 57.4 bits (139), Expect = 5e-10
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 30 QQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPL 89
++ E L L+H NIVK+ R+I EY+ SGSL+ +L+R + + L
Sbjct: 54 EREIEILRTLDHENIVKYKGVCEKPGGRSLRLIM--EYLPSGSLRDYLQRHRDQ---INL 108
Query: 90 SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ SQI + YL S IH +L I ++ LVKI
Sbjct: 109 KRLLLFSSQICKGMDYLGSQR--YIHRDLAARNILVESEDLVKIS 151
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 57.4 bits (139), Expect = 5e-10
Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
+ +G V +VQ E + KA+++ ++++ + L QL+HPN++K+ + +
Sbjct: 22 ICLLDGRVVALKKVQIFEMMDAKARQDCLKEI-DLLKQLDHPNVIKYL----ASFIENNE 76
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLP-LSAWKRWCSQILSALSYLHSCSPPIIHGNLT 119
+ + E +G L + +K K+ + +P + WK + Q+ SAL ++H S I+H ++
Sbjct: 77 LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWK-YFVQLCSALEHMH--SKRIMHRDIK 133
Query: 120 CDTIFIQHNGLVKIG 134
+FI G+VK+G
Sbjct: 134 PANVFITATGVVKLG 148
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 56.8 bits (138), Expect = 8e-10
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 21 NFKAQEEKIQQV---FENLTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQF 76
+ EE +Q+ + L E P +VK + + K I I EYM GSL
Sbjct: 35 HVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAF-----YKEGEISIVLEYMDGGSLADL 89
Query: 77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
LK+ V K+P QIL L YLH+ IIH ++ + I G VKI
Sbjct: 90 LKK----VGKIPEPVLAYIARQILKGLDYLHTKR-HIIHRDIKPSNLLINSKGEVKI 141
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 55.0 bits (132), Expect = 3e-09
Identities = 34/130 (26%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 5 EGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI 64
+GV V +VQ + + KA+ + I+++ + L QL HPN++K++ + + + + +
Sbjct: 26 DGVPVALKKVQIFDLMDAKARADCIKEI-DLLKQLNHPNVIKYYASFIEDN----ELNIV 80
Query: 65 TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
E +G L + +K K+ + +P ++ Q+ SAL ++HS ++H ++ +F
Sbjct: 81 LELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVF 138
Query: 125 IQHNGLVKIG 134
I G+VK+G
Sbjct: 139 ITATGVVKLG 148
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 54.4 bits (131), Expect = 5e-09
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L++L+HPNIV +Y + IF+ E + GSL + LK+ P + +
Sbjct: 56 LSKLQHPNIV---QYLGTEREEDNLYIFL-ELVPGGSLAKLLKK----YGSFPEPVIRLY 107
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
QIL L YLH + +H ++ I + NG+VK+
Sbjct: 108 TRQILLGLEYLHDRN--TVHRDIKGANILVDTNGVVKL 143
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 54.1 bits (131), Expect = 6e-09
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L+++ HP IVK H + + + EY G L L + + + +
Sbjct: 47 LSRINHPFIVKLHYAFQTEEK----LYLVLEYAPGGELFSHLSK----EGRFSEERARFY 98
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
++I+ AL YLHS II+ +L + I + +G +K+
Sbjct: 99 AAEIVLALEYLHSLG--IIYRDLKPENILLDADGHIKL 134
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 52.6 bits (127), Expect = 2e-08
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
Q+E I E L + HP IVK +R T DK + + EY G L L R+
Sbjct: 36 QQEHIFSEKEILEECNHPFIVKLYR----TFKDKKYIYMLMEYCLGGELWTIL----RDR 87
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ + + ++ A YLH+ II+ +L + + + NG VK+
Sbjct: 88 GLFDEYTARFYIACVVLAFEYLHNRG--IIYRDLKPENLLLDSNGYVKLV 135
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 51.9 bits (124), Expect = 4e-08
Identities = 33/126 (26%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 9 VVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYM 68
V +VQ E + KA+++ ++++ + L QL HPN++K+ D+ + + + E
Sbjct: 30 VALKKVQIFEMMDAKARQDCVKEI-DLLKQLNHPNVIKY----LDSFIEDNELNIVLELA 84
Query: 69 SSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN 128
+G L Q +K K+ + +P ++ Q+ SA+ ++HS ++H ++ +FI
Sbjct: 85 DAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR--VMHRDIKPANVFITAT 142
Query: 129 GLVKIG 134
G+VK+G
Sbjct: 143 GVVKLG 148
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 51.5 bits (123), Expect = 5e-08
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L++L+HP IVKFH + + ITEY L L+ K K L + W
Sbjct: 56 LSKLDHPAIVKFHASFLERDA----FCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEW 111
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
Q+L + Y+H I+H +L IF+++N L+KIG
Sbjct: 112 FIQLLLGVHYMHQRR--ILHRDLKAKNIFLKNN-LLKIG 147
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 51.8 bits (125), Expect = 5e-08
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 40 EHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQI 99
EHPNIVK + + + F+ EYM G+L Q +K R K S + QI
Sbjct: 56 EHPNIVKLK----EVFRENDELYFVFEYME-GNLYQLMK--DRKGKPFSESVIRSIIYQI 108
Query: 100 LSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
L L+++H H +L + + + +VKI D
Sbjct: 109 LQGLAHIHKHG--FFHRDLKPENLLVSGPEVVKI-AD 142
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 51.1 bits (123), Expect = 7e-08
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L+Q + P +VK + + N + + EY+ G L L+ NV L + +
Sbjct: 47 LSQAQSPYVVKLYYSFQGKKN----LYLVMEYLPGGDLASLLE----NVGSLDEDVARIY 98
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
++I+ AL YLHS IIH +L D I I NG +K+
Sbjct: 99 IAEIVLALEYLHSNG--IIHRDLKPDNILIDSNGHLKL 134
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 50.0 bits (120), Expect = 2e-07
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 41 HPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQI 99
P IV F+ ++ + + EYM GSL + LK + + + L +
Sbjct: 58 SPYIVGFYGAFYNNG-----DISICMEYMDGGSLDKILKEVQGRIPERILGKIAV---AV 109
Query: 100 LSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
L L+YLH IIH ++ I + G +K+ CD
Sbjct: 110 LKGLTYLHE-KHKIIHRDVKPSNILVNSRGQIKL-CD 144
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 50.0 bits (120), Expect = 2e-07
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L HPNI+K D K + + E+M + L + +K +R LP S K +
Sbjct: 52 LKELNHPNIIKLL----DVFRHKGDLYLVFEFMDT-DLYKLIKDRQR---GLPESLIKSY 103
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD------------TYTHTIE 143
Q+L L++ HS I+H +L + + I G++K+ D YTH +
Sbjct: 104 LYQLLQGLAFCHSHG--ILHRDLKPENLLINTEGVLKL-ADFGLARSFGSPVRPYTHYVV 160
Query: 144 NKKY 147
+ Y
Sbjct: 161 TRWY 164
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 49.9 bits (120), Expect = 2e-07
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L HPNIV+ T K + + EYM L L + K S K +
Sbjct: 52 LQKLRHPNIVRLKEIVTS--KGKGSIYMVFEYMDH-DLTGLLDSPE---VKFTESQIKCY 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
Q+L L YLHS I+H ++ I I ++G++K+
Sbjct: 106 MKQLLEGLQYLHSNG--ILHRDIKGSNILINNDGVLKLA 142
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 49.4 bits (118), Expect = 3e-07
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 27 EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKRNVK 85
+ ++ E L L+H NIV++ + T + I EY+ GS+ L R
Sbjct: 53 KALRSEIETLKDLDHLNIVQYLGFET-----TEEYLSIFLEYVPGGSIGSCL----RTYG 103
Query: 86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ + + Q+L L+YLHS I+H +L D + + +G+ KI
Sbjct: 104 RFEEQLVRFFTEQVLEGLAYLHSKG--ILHRDLKADNLLVDADGICKI 149
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 49.2 bits (117), Expect = 3e-07
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 14 VQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL 73
++ + R+ KA E++ Q L+QL+HPNIV + W + + + + G L
Sbjct: 35 LRNASRRERKAAEQEAQL----LSQLKHPNIVAYRESW---EGEDGLLYIVMGFCEGGDL 87
Query: 74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
LK K K LP + W QI AL YLH I+H +L +F+ ++K+
Sbjct: 88 YHKLKEQKG--KLLPENQVVEWFVQIAMALQYLH--EKHILHRDLKTQNVFLTRTNIIKV 143
Query: 134 GCDTYTHTIENKKYLSAT 151
G +EN+ +++T
Sbjct: 144 GDLGIARVLENQCDMAST 161
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 48.8 bits (116), Expect = 4e-07
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 34 ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
E L L H NIVK+ T+ + ++I E++ SGSLK++L RN K+ L
Sbjct: 58 EILRNLYHENIVKYKGICTEDGGNGIKLIM--EFLPSGSLKEYL---PRNKNKINLKQQL 112
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
++ QI + YL S +H +L + ++ VKIG T IE K
Sbjct: 113 KYAVQICKGMDYLGSRQ--YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 163
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 48.4 bits (115), Expect = 7e-07
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
+ EK+Q+ + L L+H NIV+ Y +D IF+ E++ GS+ L R
Sbjct: 45 EYEKLQEEVDLLKSLKHVNIVQ---YLGTCLDDNTISIFM-EFVPGGSISSILNR----F 96
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI---GC 135
LP + ++ QIL ++YLH+ ++H ++ + + + NG++K+ GC
Sbjct: 97 GPLPEPVFCKYTKQILDGVAYLHNNC--VVHRDIKGNNVMLMPNGIIKLIDFGC 148
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 47.8 bits (114), Expect = 9e-07
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 26 EEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK 85
+ ++ E LT +H NIVKF Y T D P ++F EYM G L +FL+ +
Sbjct: 52 RKDFEREAELLTNFQHENIVKF--YGVCTEGDPPIMVF--EYMEHGDLNKFLRSHGPDAA 107
Query: 86 ----------KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+L LS + QI S + YL S +H +L + ++ +VKIG
Sbjct: 108 FLKSPDSPMGELTLSQLLQIAVQIASGMVYL--ASQHFVHRDLATRNCLVGYDLVVKIG 164
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 48.0 bits (115), Expect = 9e-07
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 41 HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQIL 100
HPNIV ++ D++ + + EYM GSL + + ++ C ++L
Sbjct: 74 HPNIVDYY----DSYLVGDELWVVMEYMDGGSLTDIITQNF---VRMNEPQIAYVCREVL 126
Query: 101 SALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
L YLH S +IH ++ D I + +G VK+
Sbjct: 127 QGLEYLH--SQNVIHRDIKSDNILLSKDGSVKLA 158
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 47.4 bits (113), Expect = 1e-06
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 25 QEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
Q+E+ V E L + HPNI+ + + D + ++ + EY G L + + + K+
Sbjct: 40 QKEREDAVNEIRILASVNHPNIISYKEAFLDGN----KLCIVMEYAPFGDLSKAISKRKK 95
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
K +P R Q+L L LH I+H +L I + N LVKIG
Sbjct: 96 KRKLIPEQEIWRIFIQLLRGLQALHEQK--ILHRDLKSANILLVANDLVKIG 145
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 47.5 bits (113), Expect = 1e-06
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 19/138 (13%)
Query: 2 DTEEGVEVVWNEVQF-----SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
D + G E+ +V F +K A E +IQ L L+H IV+++ D
Sbjct: 23 DVDTGRELAVKQVPFDPDSPETKKEVNALECEIQL----LKNLQHERIVQYYGCLRD--- 75
Query: 57 DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
D+ IF+ EYM GS+K LK L + +++ QIL + YLHS I+H
Sbjct: 76 DETLSIFM-EYMPGGSVKDQLKA----YGALTETVTRKYTRQILEGVEYLHSNM--IVHR 128
Query: 117 NLTCDTIFIQHNGLVKIG 134
++ I G VK+G
Sbjct: 129 DIKGANILRDSAGNVKLG 146
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 47.4 bits (113), Expect = 1e-06
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 36 LTQLEHPNIVKFHRYWTDTH--NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK 93
+ +HPNIV+ + ++ D+ V+ E++ G+L + T+ N +++
Sbjct: 70 MRDYQHPNIVEMY----SSYLVGDELWVVM--EFLEGGALTDIVTHTRMNEEQIATV--- 120
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
C +L ALS+LH + +IH ++ D+I + +G VK+
Sbjct: 121 --CLAVLKALSFLH--AQGVIHRDIKSDSILLTSDGRVKL 156
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 46.7 bits (111), Expect = 2e-06
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
QE+ + L ++ HP I++ +W T +D+ + + EY+ G L +L RN
Sbjct: 44 QEQHVHNEKRVLKEVSHPFIIRL--FW--TEHDQRFLYMLMEYVPGGELFSYL----RNS 95
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ S + S+I+ AL YLHS I++ +L + I + G +K+
Sbjct: 96 GRFSNSTGLFYASEIVCALEYLHSKE--IVYRDLKPENILLDKEGHIKL 142
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 46.9 bits (112), Expect = 2e-06
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 20 KNFKAQEEKIQQVF---ENLTQLEHPNIVK-FHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
K + K+++V E L L+HP + + + T+T+ + + +Y G L +
Sbjct: 36 KKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETY-----LCLVMDYCPGGELFR 90
Query: 76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
L+R L + + +++L AL YLH I++ +L + I + +G
Sbjct: 91 LLQRQPGKC--LSEEVARFYAAEVLLALEYLHLLG--IVYRDLKPENILLHESG 140
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 46.3 bits (110), Expect = 3e-06
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 24 AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKR 82
++++ I++ + + +L HPN+V+ + T K R IFI TEYM++G L +L+ K
Sbjct: 42 SEDDFIEEA-KVMMKLSHPNLVQLYGVCT-----KQRPIFIVTEYMANGCLLNYLRERKG 95
Query: 83 NVKK-LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ L CS + A+ YL S IH +L + + +VK+
Sbjct: 96 KLGTEWLLDM----CSDVCEAMEYLESNG--FIHRDLAARNCLVGEDNVVKV 141
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 46.6 bits (110), Expect = 3e-06
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 2 DTEEGVEVVWNEVQF-----SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
D + G E+ +VQF K A E +IQ L L+H IV+++ D
Sbjct: 23 DVDTGRELAAKQVQFDPESPETSKEVSALECEIQL----LKNLQHERIVQYYGCLRD-RA 77
Query: 57 DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
+K IF+ EYM GS+K LK L S +++ QIL +SYLHS I+H
Sbjct: 78 EKTLTIFM-EYMPGGSVKDQLKA----YGALTESVTRKYTRQILEGMSYLHSNM--IVHR 130
Query: 117 NLTCDTIFIQHNGLVKIG 134
++ I G VK+G
Sbjct: 131 DIKGANILRDSAGNVKLG 148
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 46.4 bits (111), Expect = 3e-06
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 1 MDTEEGVEVVWNEVQFSERK------NFKA-QEEKIQQVFENLTQLEHPNIVKFHRYWTD 53
D E G V +++ ERK NF A +E K+ L +L+HPNI+ D
Sbjct: 20 RDKETGRIVAIKKIKLGERKEAKDGINFTALREIKL------LQELKHPNIIGLL----D 69
Query: 54 THNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSA--WKRWCSQILSALSYLHSCSP 111
K + + E+M + L++ +K K + L+ K + L L YLHS
Sbjct: 70 VFGHKSNINLVFEFMET-DLEKVIKD-----KSIVLTPADIKSYMLMTLRGLEYLHSNW- 122
Query: 112 PIIHGNLTCDTIFIQHNGLVKIG 134
I+H +L + + I +G++K+
Sbjct: 123 -ILHRDLKPNNLLIASDGVLKLA 144
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 46.3 bits (110), Expect = 3e-06
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 35/140 (25%)
Query: 1 MDTEEG-VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEH---PNIVKFHRYWTDTHN 56
+DT + V + EV L+QL PNI K++ +
Sbjct: 36 LDTPDDDVSDIQREVAL-------------------LSQLRQSQPPNITKYYGSYLK--- 73
Query: 57 DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
PR+ I EY GS++ +K + + +S R ++L AL Y+H +IH
Sbjct: 74 -GPRLWIIMEYAEGGSVRTLMKAGP--IAEKYISVIIR---EVLVALKYIHKV--GVIHR 125
Query: 117 NLTCDTIFIQHNGLVKIGCD 136
++ I + + G VK+ CD
Sbjct: 126 DIKAANILVTNTGNVKL-CD 144
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 46.5 bits (111), Expect = 3e-06
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 20 KNFKAQEE------KIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL 73
K FK E+ + + L QL H NIV + K R+ + EY+ +L
Sbjct: 32 KKFKESEDDEDVKKTALREVKVLRQLRHENIVNL----KEAFRRKGRLYLVFEYVER-TL 86
Query: 74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ L+ + LP A + + Q+L A++Y HS + IIH ++ + I + +G++K+
Sbjct: 87 LELLEASPGG---LPPDAVRSYIWQLLQAIAYCHSHN--IIHRDIKPENILVSESGVLKL 141
Query: 134 GCD 136
CD
Sbjct: 142 -CD 143
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 46.0 bits (109), Expect = 4e-06
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 21 NFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
N + +EE I + L +L+ I++++ ++ DK ++ + EY +G L + LK
Sbjct: 39 NRREREEAIDEA-RVLAKLDSSYIIRYY----ESFLDKGKLNIVMEYAENGDLHKLLK-- 91
Query: 81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ + LP R+ QIL L++LH S I+H ++ +F+ VKIG
Sbjct: 92 MQRGRPLPEDQVWRFFIQILLGLAHLH--SKKILHRDIKSLNLFLDAYDNVKIG 143
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 45.7 bits (109), Expect = 7e-06
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ TK +K EK+ EEE+++KKKK +KK+E+E+E+K+KK++ +EE
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 44.5 bits (106), Expect = 2e-05
Identities = 20/45 (44%), Positives = 35/45 (77%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
EK ++K EEE++EKKKK ++K++E+E+EK+KK+++ +EE
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 44.5 bits (106), Expect = 2e-05
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K +K EK E++ EE+KK+KK++ K+KE+E++++K+K ++E
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 42.2 bits (100), Expect = 1e-04
Identities = 14/44 (31%), Positives = 36/44 (81%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EKK+E+E++E+++K K++EE+++E++++K+++K++ + E
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Score = 42.2 bits (100), Expect = 1e-04
Identities = 24/38 (63%), Positives = 36/38 (94%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KKKE+EEEEE+EKK+++KEEEE++ E+EKE++++KKK
Sbjct: 437 GKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Score = 41.8 bits (99), Expect = 1e-04
Identities = 16/44 (36%), Positives = 34/44 (77%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+KK +EE++E++KK +++E+++E+EKEKK+++K+ +E
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 40.7 bits (96), Expect = 3e-04
Identities = 20/38 (52%), Positives = 37/38 (97%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+KK+E+EEEE+E+K+++K+EEEE+ +E+++E+++KKKK
Sbjct: 438 KKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/48 (37%), Positives = 37/48 (77%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E K KK++EEEEEE++KK++++EEE+++ +E+++++++KK
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 40.7 bits (96), Expect = 3e-04
Identities = 15/54 (27%), Positives = 39/54 (72%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E +T + T+K K+ E+ E++++++KKE+++K +K++++++++ +KEE
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 40.7 bits (96), Expect = 3e-04
Identities = 16/46 (34%), Positives = 37/46 (80%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
V + +K++EEE++E+KKK ++++++E+E+++KK+++K +EE
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 40.3 bits (95), Expect = 4e-04
Identities = 19/38 (50%), Positives = 36/38 (94%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+K++E+EEE+E+++++K++EEEE ++EKE+E++KKKK
Sbjct: 438 KKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 40.3 bits (95), Expect = 4e-04
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + K+KEEEEEEEK+KK++E+EE+++E E+EK+++++K
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 39.5 bits (93), Expect = 7e-04
Identities = 18/44 (40%), Positives = 36/44 (81%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+KKEK+++ KKK+++EEEEK+K++E++++++++ KEE
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 39.5 bits (93), Expect = 7e-04
Identities = 17/45 (37%), Positives = 37/45 (82%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EKK++K++ +KK++++EEE++KKE+EKE+++++ + ++EE
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/56 (32%), Positives = 41/56 (73%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+IV K E++K++++++ KKK++EEEE+K++KE+EK++++++ ++E
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 37.6 bits (88), Expect = 0.003
Identities = 18/37 (48%), Positives = 34/37 (91%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
E+++E+E+E++EE+K++++EE E++KE+E+EKKKK
Sbjct: 439 KKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 36.8 bits (86), Expect = 0.006
Identities = 13/46 (28%), Positives = 36/46 (78%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+K+K+K+ ++K+++++EE+EKK+E+++E++++ ++ +EE
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 35.7 bits (83), Expect = 0.012
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 136 DTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEE 195
K A ++ + + E+++EKE++EEE+++++++ EE
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 196 EKKKEKEKEKK 206
EK++E+EK+KK
Sbjct: 465 EKEEEEEKKKK 475
Score = 34.1 bits (79), Expect = 0.046
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+TE++ E ++ KK KK E+ +K++E+EKK+KKKK ++
Sbjct: 393 ELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 30.7 bits (70), Expect = 0.61
Identities = 17/31 (54%), Positives = 28/31 (90%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK 203
++KKE+E+EEEEE+ +++KEEEE+KK+K+
Sbjct: 447 EKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 45.2 bits (107), Expect = 8e-06
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ +++HPN+V+ T +P ITE+M+ G+L +L+ R +++
Sbjct: 56 MKEIKHPNLVQLLGVCTR----EPPFYIITEFMTYGNLLDYLRECNR--QEVNAVVLLYM 109
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG---------CDTYT 139
+QI SA+ YL + IH +L + N LVK+ DTYT
Sbjct: 110 ATQISSAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 160
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 45.0 bits (107), Expect = 9e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +HP +VK D + + EYM S L + L+ +R LP + K +
Sbjct: 53 LQACQHPYVVKLL----DVFPHGSGFVLVMEYMPS-DLSEVLRDEER---PLPEAQVKSY 104
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+L ++Y+H+ I+H +L + I +G++KI
Sbjct: 105 MRMLLKGVAYMHANG--IMHRDLKPANLLISADGVLKIA 141
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 45.1 bits (105), Expect = 1e-05
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 41 HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQIL 100
PNIVK + D D+ + + EY+ GSL+ LK+ R L S +QIL
Sbjct: 57 PPNIVKLY----DFFQDEGSLYLVMEYVDGGSLEDLLKKIGRK-GPLSESEALFILAQIL 111
Query: 101 SALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
SAL YLHS IIH ++ + I + +G
Sbjct: 112 SALEYLHSKG--IIHRDIKPENILLDRDG 138
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 44.8 bits (107), Expect = 1e-05
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 28/126 (22%)
Query: 28 KIQQVFENLTQ-------------LEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSL 73
KI VF++L L H NI+ + ++I TE M + L
Sbjct: 32 KISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELMET-DL 90
Query: 74 KQFLKRTKRNVKKLPLSAWKRWCS---QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
+ +K PL+ QIL L YLHS + +IH +L I + N
Sbjct: 91 HKVIK------SPQPLTD-DHIQYFLYQILRGLKYLHSAN--VIHRDLKPSNILVNSNCD 141
Query: 131 VKIGCD 136
+KI CD
Sbjct: 142 LKI-CD 146
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 44.4 bits (105), Expect = 1e-05
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L HPNIVK H + ++ + E++ LK+F+ + + +PL K +
Sbjct: 53 LKELNHPNIVKLLDV---IHTEN-KLYLVFEFLHQ-DLKKFMDAS--PLSGIPLPLIKSY 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG-----------CDTYTHTI 142
Q+L L++ HS ++H +L + I G +K+ TYTH +
Sbjct: 106 LFQLLQGLAFCHSHR--VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEV 161
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 44.3 bits (105), Expect = 1e-05
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-------TKRNVKKLP 88
L++L PNI R D P + I EYM +G L QFL++ N K L
Sbjct: 73 LSRLSDPNIA---RLLGVCTVDPPLCM-IMEYMENGDLNQFLQKHVAETSGLACNSKSLS 128
Query: 89 LSAWKRWCSQILSALSYLHS 108
S +QI S + YL S
Sbjct: 129 FSTLLYMATQIASGMRYLES 148
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 44.6 bits (105), Expect = 1e-05
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 16 FSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
+ RK+F Q+ E LT L+H +IVKF+ D +I + EYM G L +
Sbjct: 48 LAARKDF-------QREAELLTNLQHEHIVKFY----GVCGDGDPLIMVFEYMKHGDLNK 96
Query: 76 FLK------------RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
FL+ + ++ +L LS SQI S + YL S +H +L
Sbjct: 97 FLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL--ASQHFVHRDLATRNC 154
Query: 124 FIQHNGLVKIG 134
+ N LVKIG
Sbjct: 155 LVGANLLVKIG 165
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 44.1 bits (104), Expect = 2e-05
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 15 QFSERKNFKAQEEKIQQVFEN----LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSS 70
Q + +N +++E++ + + +L HP+I+ R T D +F+ E+M+
Sbjct: 32 QVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHII---RMLGATCEDSHFNLFV-EWMAG 87
Query: 71 GSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
GS+ L + + Q+L LSYLH IIH ++ + I G
Sbjct: 88 GSVSHLLS----KYGAFKEAVIINYTEQLLRGLSYLHENQ--IIHRDVKGANLLIDSTG 140
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 23 KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
++ +++ + L+H N+++ + ++ +TE GSL L+ K
Sbjct: 38 DIMDDFLKEA-AIMHSLDHENLIRLYGVVLT-----HPLMMVTELAPLGSLLDRLR--KD 89
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ +S + QI + + YL S IH +L I + + VKIG
Sbjct: 90 ALGHFLISTLCDYAVQIANGMRYLESKR--FIHRDLAARNILLASDDKVKIG 139
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 44.4 bits (105), Expect = 2e-05
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
Q + + Q L +L HP IV + D+ RV F+ E++ G L L R
Sbjct: 61 QVQHVAQEKSILMELSHPFIVNMMC----SFQDENRVYFLLEFVVGGELFTHL----RKA 112
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ P K + ++++ A YLHS II+ +L + + + + G VK+
Sbjct: 113 GRFPNDVAKFYHAELVLAFEYLHSKD--IIYRDLKPENLLLDNKGHVKV 159
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 44.0 bits (104), Expect = 2e-05
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 163 YEIVTKTNNVT----EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
Y V K E+++EKEE++EEE+K KEEE ++E+++EKKKK KK+
Sbjct: 24 YLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77
Score = 31.3 bits (71), Expect = 0.43
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
T K+E+ +EEEE+++KKKK ++ K+ E E K K I
Sbjct: 54 TTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPI 93
Score = 29.0 bits (65), Expect = 2.3
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
T+K++E +EEEE+E+KKKK ++ ++ + + K K R
Sbjct: 55 TDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRN 97
Score = 28.6 bits (64), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK 203
E + E+K +EEE +E+++K++++++ KK KE
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 43.7 bits (104), Expect = 3e-05
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L + HP +V Y + + + + EY+ G L L R + P + +
Sbjct: 55 LQSIRHPFLVNL--YGSFQDDS--NLYLVMEYVPGGELFSHL----RKSGRFPEPVARFY 106
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+Q++ AL YLHS I++ +L + + + +G +KI
Sbjct: 107 AAQVVLALEYLHSLD--IVYRDLKPENLLLDSDGYIKI 142
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 43.6 bits (103), Expect = 3e-05
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 30 QQVFENLT---QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
+Q+ L + P IVK++ + D + + EY GSL K+ K+ +
Sbjct: 44 KQILRELEINKSCKSPYIVKYYGAFLDESSSS--IGIAMEYCEGGSLDSIYKKVKKRGGR 101
Query: 87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
+ + +L LSYLH S IIH ++ I + G VK+ CD
Sbjct: 102 IGEKVLGKIAESVLKGLSYLH--SRKIIHRDIKPSNILLTRKGQVKL-CD 148
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 43.3 bits (102), Expect = 3e-05
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 7 VEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITE 66
VE+ +RK ++ + + + L +L+H NIV++ + D + E
Sbjct: 33 VELPSVSASSKDRK--RSMLDALAREIALLKELQHENIVQY----LGSSLDADHLNIFLE 86
Query: 67 YMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQ 126
Y+ GS+ L N + + + QIL L+YLH + IIH ++ I +
Sbjct: 87 YVPGGSVAALLN----NYGAFEETLVRNFVRQILKGLNYLH--NRGIIHRDIKGANILVD 140
Query: 127 HNGLVKI 133
+ G +KI
Sbjct: 141 NKGGIKI 147
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 43.2 bits (102), Expect = 4e-05
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 20 KNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
K K + + +NL +++ NI+K + + D +D PR+ I EY + G L++ L +
Sbjct: 56 KGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDK 115
Query: 80 TKRNVKKLPLSAWKRW-----CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
K LS + C + L L Y ++ P + NLT + + N +KI
Sbjct: 116 EKD------LSFKTKLDMAIDCCKGLYNL-YKYTNKP---YKNLTSVSFLVTENYKLKII 165
Query: 135 CDTYTHTIENKKY 147
C + + +
Sbjct: 166 CHGLEKILSSPPF 178
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 43.3 bits (102), Expect = 4e-05
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 14 VQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSL 73
V+ +R+ + ++ L L H NIVK+ ++ + I EY+ GSL
Sbjct: 38 VKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKG--LQLIMEYVPLGSL 95
Query: 74 KQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ +L + K N+ +L L A QI ++YLH S IH +L + + ++ LVKI
Sbjct: 96 RDYLPKHKLNLAQLLLFA-----QQICEGMAYLH--SQHYIHRDLAARNVLLDNDRLVKI 148
Query: 134 G 134
G
Sbjct: 149 G 149
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 42.7 bits (101), Expect = 4e-05
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 38 QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCS 97
+L H +V+ + ++ +P I +TEYMS GSL FLK KKL L +
Sbjct: 57 KLRHDKLVQLYAVCSEE---EPIYI-VTEYMSKGSLLDFLK--SGEGKKLRLPQLVDMAA 110
Query: 98 QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
QI ++YL S + IH +L I + N + KI
Sbjct: 111 QIAEGMAYLESRN--YIHRDLAARNILVGENLVCKI 144
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 42.7 bits (100), Expect = 6e-05
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 2 DTEEGVEVVWNEVQF-----SERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
D + G E+ +V F K A E +IQ L L H IV+++ D
Sbjct: 23 DADTGRELAVKQVPFDPDSQETSKEVNALECEIQL----LKNLRHDRIVQYYGCLRD-PE 77
Query: 57 DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
+K IF+ EYM GS+K LK + + +R+ QIL +SYLHS I+H
Sbjct: 78 EKKLSIFV-EYMPGGSIKDQLKAYGALTENVT----RRYTRQILQGVSYLHSNM--IVHR 130
Query: 117 NLTCDTIFIQHNGLVKIG 134
++ I G VK+G
Sbjct: 131 DIKGANILRDSAGNVKLG 148
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 42.2 bits (99), Expect = 7e-05
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ Q +HPNI+ T + KP V+ +TEYM +GSL FL++ + L R
Sbjct: 59 MGQFDHPNIIHLEGVVTKS---KP-VMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLR- 113
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
I S + YL +H +L I + N + K+
Sbjct: 114 --GIASGMKYLSDMG--YVHRDLAARNILVNSNLVCKV 147
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 42.5 bits (100), Expect = 7e-05
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 28 KIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKL 87
+I + E L + HPN+VK H + HN + +V+ E+M GSL+ +
Sbjct: 118 QICREIEILRDVNHPNVVKCHDMF--DHNGEIQVLL--EFMDGGSLE-----GTHIADEQ 168
Query: 88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
L+ R QILS ++YLH I+H ++ + I VKI
Sbjct: 169 FLADVAR---QILSGIAYLH--RRHIVHRDIKPSNLLINSAKNVKI 209
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 41.9 bits (98), Expect = 9e-05
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 2 DTEEGVEVVWNEVQFS-----ERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHN 56
D + G E+ +VQF K A E +IQ L L H IV+++ D
Sbjct: 23 DADTGRELAVKQVQFDPESPETSKEVNALECEIQL----LKNLLHERIVQYYGCLRDPM- 77
Query: 57 DKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHG 116
++ IF+ E+M GS+K LK + L + +++ QIL +SYLHS I+H
Sbjct: 78 ERTLSIFM-EHMPGGSIKDQLK----SYGALTENVTRKYTRQILEGVSYLHSNM--IVHR 130
Query: 117 NLTCDTIFIQHNGLVKIG 134
++ I G VK+G
Sbjct: 131 DIKGANILRDSVGNVKLG 148
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 42.0 bits (99), Expect = 9e-05
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 27 EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
EK Q + Q +HP+IVK T+ V + E G L+ +L+ K +
Sbjct: 52 EKFLQEAYIMRQFDHPHIVKLIGVITE-----NPVWIVMELAPLGELRSYLQVNKYS--- 103
Query: 87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
L L++ + Q+ +AL+YL S +H ++ + + VK+G + +E++
Sbjct: 104 LDLASLILYSYQLSTALAYLESKR--FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES 161
Query: 147 YLSATR 152
Y A++
Sbjct: 162 YYKASK 167
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 41.5 bits (98), Expect = 1e-04
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 26 EEKIQQVFENLTQL-EHPNIVKFHRYWT--DTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
EE+I++ + L + HPNI F+ + + + ++ + E GS+ +K ++
Sbjct: 46 EEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRK 105
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
K+L + L L+YLH +IH ++ I + N VK+ D
Sbjct: 106 KGKRLKEEWIAYILRETLRGLAYLHENK--VIHRDIKGQNILLTKNAEVKL-VD 156
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 41.7 bits (98), Expect = 1e-04
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
Q EK VFE T HP +V H + R+ F+ E++S G L ++R
Sbjct: 43 QTEK--HVFE--TASNHPFLVGLHSCFQTE----SRLFFVIEFVSGGDLMFHMQRQ---- 90
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+KLP + + ++I AL++LH II+ +L D + + G +K+
Sbjct: 91 RKLPEEHARFYSAEISLALNFLHERG--IIYRDLKLDNVLLDAEGHIKL 137
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 41.5 bits (97), Expect = 1e-04
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 20 KNFKAQEEKIQQVF----ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
K K E +Q F E LT L+H +IV+F+ T+ +P ++ + EYM G L +
Sbjct: 41 KALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE---GRP-LLMVFEYMRHGDLNR 96
Query: 76 FLKRTKRNVK-----------KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIF 124
FL+ + K +L L SQI S + YL S +H +L
Sbjct: 97 FLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH--FVHRDLATRNCL 154
Query: 125 IQHNGLVKIG 134
+ +VKIG
Sbjct: 155 VGQGLVVKIG 164
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 41.7 bits (98), Expect = 1e-04
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L++ +HPNIV + + + + ++ + E+ G+L + +R + + +
Sbjct: 56 LSECKHPNIVGLY----EAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRY---V 108
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
C Q+L AL++LH S +IH +L I + +G VK+
Sbjct: 109 CRQMLEALNFLH--SHKVIHRDLKAGNILLTLDGDVKL 144
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 41.4 bits (97), Expect = 1e-04
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ QL+HP +V+ + T + + ITEYM +GSL FLK + KL ++
Sbjct: 55 MKQLQHPRLVRLYAVVT-----QEPIYIITEYMENGSLVDFLKTPEG--IKLTINKLIDM 107
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLS 149
+QI ++++ + IH +L I + KI IE+ +Y +
Sbjct: 108 AAQIAEGMAFIERKN--YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTA 159
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 41.3 bits (97), Expect = 2e-04
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
++QL H ++VK + N I + EY+ G L FL R K NV WK
Sbjct: 55 MSQLSHKHLVKLYGVCVRDEN-----IMVEEYVKFGPLDVFLHREKNNVS----LHWKLD 105
Query: 96 CS-QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
+ Q+ SAL YL ++HGN+ I + GL
Sbjct: 106 VAKQLASALHYLEDKK--LVHGNVCGKNILVARYGL 139
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+++KE+E+ + K K KK + K +EKEK K++K++K +R+ E
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 35.0 bits (81), Expect = 0.017
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ +EKEEE+ + K K ++ K K +EKEK K++K+ E
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83
Score = 33.9 bits (78), Expect = 0.044
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+EEE+EEK+++K + K K K+ K K ++K K E
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 33.1 bits (76), Expect = 0.066
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+ +EEE+E+K+++K + K + +K K K ++ + +
Sbjct: 34 KDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKR 74
Score = 31.6 bits (72), Expect = 0.23
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 174 EKKKEKEEEEEEEKKK---KKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EK++EK + + K K K K EE++K ++EKE+K ++ E
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
Score = 31.6 bits (72), Expect = 0.27
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K K EE+E+ K++K+++ + +E E + +K +RK +
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
K +EKE+ + E+++K +E EE E E +K + +K+
Sbjct: 64 AKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKL 102
Score = 27.7 bits (62), Expect = 4.2
Identities = 9/45 (20%), Positives = 28/45 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K + EE+E+ +++K++K E +++ +++ +K ++ + +E
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 41.0 bits (96), Expect = 2e-04
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 24 AQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKR 82
+++E I++ + + +L H +V+ + T K R I+I TEYMS+G L +L+
Sbjct: 42 SEDEFIEEA-KVMMKLSHEKLVQLYGVCT-----KQRPIYIVTEYMSNGCLLNYLREHG- 94
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
K+ S C + ++YL S IH +L + G VK+
Sbjct: 95 --KRFQPSQLLEMCKDVCEGMAYLE--SKQFIHRDLAARNCLVDDQGCVKV 141
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ G+ E+ E K+E + ++K+ K + +KKKEK++ K K K
Sbjct: 33 KKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKS 88
Score = 29.8 bits (68), Expect = 1.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEK 203
KKE + + +KKK+K+E + K + +
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKP 90
Score = 28.3 bits (64), Expect = 3.7
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
K K + KKKE++E K K K K +
Sbjct: 67 KAWHKAQ--------KKKEKQEAKAAKAKSKPR 91
Score = 27.5 bits (62), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEK 201
KK+ K + ++KK+K++ + K K K
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSK 89
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 40.8 bits (96), Expect = 2e-04
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 29 IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
+QQ QL+HPNI+ Y T + + ++ M+ GS + LK LP
Sbjct: 46 LQQEIITSRQLQHPNILP---YVT-SFIVDSELYVVSPLMAYGSCEDLLKTHFPE--GLP 99
Query: 89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
A +L+AL Y+HS IH ++ I + +G V +
Sbjct: 100 ELAIAFILKDVLNALDYIHSKG--FIHRSVKASHILLSGDGKVVL 142
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 40.8 bits (96), Expect = 2e-04
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ Q +HPNI++ T + +P +I ITEYM +GSL +FL+ L R
Sbjct: 59 MGQFDHPNIIRLEGVVTKS---RPVMI-ITEYMENGSLDKFLRENDGKFTVGQLVGMLR- 113
Query: 96 CSQILSALSYL 106
I S + YL
Sbjct: 114 --GIASGMKYL 122
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 40.9 bits (97), Expect = 2e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KKE E +EE K + E E++ +E+ E +K +K++++KEEN
Sbjct: 53 AIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEEN 97
Score = 35.1 bits (82), Expect = 0.019
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ E KKE E ++E + K+E + + E EKE ++++ ++ + E+
Sbjct: 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89
Score = 30.9 bits (71), Expect = 0.44
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++K E E+ EEE +KK+KE E+K++E EK++++ ++ I + +
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Score = 30.9 bits (71), Expect = 0.52
Identities = 13/43 (30%), Positives = 31/43 (72%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++ E E+ E++ +KKE+E ++K++E EKK+++ + + +E+
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
Score = 30.5 bits (70), Expect = 0.67
Identities = 12/39 (30%), Positives = 31/39 (79%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
+K+E+E E++E++ ++K++E EKK+E+ +E +++ + +
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
Score = 30.5 bits (70), Expect = 0.72
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K KE EEE + ++ KKE E KKE E K++ K+ + E
Sbjct: 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEK 75
Score = 29.7 bits (68), Expect = 1.3
Identities = 13/48 (27%), Positives = 35/48 (72%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + + + EK++E+ E++E+E ++K++E E+K++E E+ +++ ++
Sbjct: 96 ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 29.4 bits (67), Expect = 1.6
Identities = 11/54 (20%), Positives = 30/54 (55%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E + + K + + E+E E++ + ++ E++ +KE+ +K + + ++EE
Sbjct: 57 EALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110
Score = 27.8 bits (63), Expect = 5.0
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKE----KEKEKKKKKKKIMRKEEN 218
+K EK ++EE +K E EK++E KEKE ++K++++ +KEE
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Score = 27.0 bits (61), Expect = 9.6
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKE---KEKEKKKKKKKIMRKEE 217
+ K +K+E + + E +K+++E E+K+KE K++E +KK++++ E
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 40.9 bits (96), Expect = 2e-04
Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 30/171 (17%)
Query: 1 MDTEEGVEVVWNEVQFSERKNF-KAQEEKIQQVFENLT---------QLEHPNIVKFHRY 50
DT G V +V+ E N + + + T +++H NI+
Sbjct: 29 YDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGL--- 85
Query: 51 WTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCS 110
D + + + + + M+S LK+ + R R L S K QIL+ L+ LH
Sbjct: 86 -VDVYVEGDFINLVMDIMAS-DLKKVVDRKIR----LTESQVKCILLQILNGLNVLHKWY 139
Query: 111 PPIIHGNLTCDTIFIQHNGLVKI---------GCDTYTHTIENKKYLSATR 152
+H +L+ IFI G+ KI G Y+ T+ + +
Sbjct: 140 --FMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRRE 188
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 40.7 bits (95), Expect = 3e-04
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 32 VFENLTQLEHPNIVKFHRYWTDTHNDKP-RVIFITEYMSSGSLKQFLKRTKRNVKKLPLS 90
+ + L +HPNIV+ + D+ +V + E++ L+ +L K LP
Sbjct: 52 LLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYL--DKVPPPGLPAE 108
Query: 91 AWKRWCSQILSALSYLH-SCSPPIIHGNLTCDTIFIQHNGLVKI 133
K Q L L +LH +C I+H +L + I + G VK+
Sbjct: 109 TIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKL 149
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 40.1 bits (94), Expect = 3e-04
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
T K EKE E EEE+KK+KK+++E KKEK+++K KK+K + K
Sbjct: 139 TTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 35.8 bits (83), Expect = 0.006
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EKKK+KE ++E+++KK KKE+ + K +K+KKKKKKK
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 35.8 bits (83), Expect = 0.007
Identities = 19/43 (44%), Positives = 34/43 (79%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E+KKEK++++E +K+KK+K+++++K + K KKKKKK +K
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 35.8 bits (83), Expect = 0.008
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 155 YGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
YG P E+ +++ ++ K E+E E ++++KKE+++KK+ K+++K+KK KK
Sbjct: 118 YGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 33.5 bits (77), Expect = 0.049
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 173 TEKKKEKEEEEEEEKKKK------KKEEEEKKKEKEKEKKKKKKKIMRKEE 217
T K +++ E EEEEKK+K KKE++EKK +KEK + K K +K++
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Score = 32.4 bits (74), Expect = 0.098
Identities = 17/46 (36%), Positives = 35/46 (76%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E++++KE+++++E KK+KKE+++KK++ + K KKKK +K+
Sbjct: 147 AEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 31.2 bits (71), Expect = 0.25
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ + E E+E K ++E E ++E++KEKKKKK+ K+E
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 29.7 bits (67), Expect = 0.84
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ + + E+E + +K+ + EEE+KKEK+K+K+ KK+K +K++
Sbjct: 128 LGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 40.4 bits (94), Expect = 3e-04
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64 ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
+ E++ G+L + T+ N +++ C +L ALS LH+ +IH ++ D+I
Sbjct: 95 VMEFLEGGALTDIVTHTRMNEEQIAAV-----CLAVLKALSVLHAQG--VIHRDIKSDSI 147
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
+ H+G VK+ C + + +K L T
Sbjct: 148 LLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGT 179
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 40.1 bits (94), Expect = 4e-04
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L+HPNIV D + R+ I E++S LK++L + + + K +
Sbjct: 53 LKELQHPNIVCLQ----DVLMQESRLYLIFEFLSM-DLKKYLDSLPKG-QYMDAELVKSY 106
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
QIL + + HS ++H +L + I + G++K+
Sbjct: 107 LYQILQGILFCHSRR--VLHRDLKPQNLLIDNKGVIKL 142
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 40.0 bits (94), Expect = 4e-04
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L HP +V + D N + + + + G L+ L + K K W
Sbjct: 54 LQELNHPFLVNLWYSFQDEEN----MYLVVDLLLGGDLRYHLSQKV----KFSEEQVKFW 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+I+ AL YLHS IIH ++ D I + G V I
Sbjct: 106 ICEIVLALEYLHSKG--IIHRDIKPDNILLDEQGHVHIT 142
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 39.9 bits (93), Expect = 5e-04
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-------TKRNVKKLP 88
+++L+ PNI++ P + ITEYM +G L QFL R K +V +
Sbjct: 73 MSRLKDPNIIRLLAVCIT---SDP-LCMITEYMENGDLNQFLSRHEPQEAAEKADVVTIS 128
Query: 89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
S +QI S + YL S + +H +L + N +KI
Sbjct: 129 YSTLIFMATQIASGMKYLSSLN--FVHRDLATRNCLVGKNYTIKI 171
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 39.8 bits (93), Expect = 5e-04
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 19 RKNFKAQEEKIQQVFENLT----QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLK 74
K+ + +++ I + +T QL HPNIV++++ + + R+ + + + L
Sbjct: 42 GKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEND----RLYIVMDLIEGAPLG 97
Query: 75 QFLKRTKRNVKKLPLSAWKRW--CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVK 132
+ K KK + + W Q++ AL YLH I+H +LT + I + + V
Sbjct: 98 EHFNSLKE--KKQRFTEERIWNIFVQMVLALRYLHK-EKRIVHRDLTPNNIMLGEDDKVT 154
Query: 133 I 133
I
Sbjct: 155 I 155
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 39.7 bits (92), Expect = 6e-04
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 25 QEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
Q EK VFE + HP +V H + + R+ F+ EY++ G L ++R
Sbjct: 43 QTEK--HVFEQASN--HPFLVGLHSCF----QTESRLFFVIEYVNGGDLMFHMQRQ---- 90
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+KLP + + ++I AL+YLH II+ +L D + + G +K+
Sbjct: 91 RKLPEEHARFYSAEISLALNYLHERG--IIYRDLKLDNVLLDSEGHIKL 137
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 39.4 bits (92), Expect = 6e-04
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 22 FKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
+ K Q E L Q +HPNIVK K + + E + GSL FL++ K
Sbjct: 32 PPDLKRKFLQEAEILKQYDHPNIVKLIGVCV----QKQPIYIVMELVPGGSLLTFLRKKK 87
Query: 82 RNVKKLPLSAWKRWCSQILSALSYLHS--CSPPIIHGNLTCDTIFIQHNGLVKI 133
+L + + + + YL S C IH +L + N ++KI
Sbjct: 88 ---NRLTVKKLLQMSLDAAAGMEYLESKNC----IHRDLAARNCLVGENNVLKI 134
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 39.7 bits (93), Expect = 6e-04
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK-LPLSAWKR 94
L L HPNIV+ H D + + EY +Q L N+ S K
Sbjct: 60 LLNLRHPNIVELKEVVVGKHLDS--IFLVMEY-----CEQDLASLLDNMPTPFSESQVKC 112
Query: 95 WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
Q+L L YLH IIH +L + + G +KI D
Sbjct: 113 LMLQLLRGLQYLHENF--IIHRDLKVSNLLLTDKGCLKI-AD 151
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 39.3 bits (92), Expect = 6e-04
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 38 QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP----LSAWK 93
+L HP +++ + T ++P I +TE M GSL ++L+ KLP ++A
Sbjct: 57 KLRHPKLIQLYAVCTL---EEPIYI-VTELMKYGSLLEYLQGGAGRALKLPQLIDMAA-- 110
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
Q+ S ++YL + + IH +L + + N + K+
Sbjct: 111 ----QVASGMAYLEAQN--YIHRDLAARNVLVGENNICKVA 145
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 39.5 bits (93), Expect = 7e-04
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K K E++ K KK ++ ++KEKEK+K K K ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418
Score = 39.5 bits (93), Expect = 8e-04
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
KT +EKK K ++ K+ +KKE+E++K K K++ + K I ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKP-KVKKRHRDTKNIGKR 425
Score = 38.4 bits (90), Expect = 0.002
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KT ++K K E++E++K+K K ++ + K K++K
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSG 430
Score = 36.1 bits (84), Expect = 0.011
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
TK + + K ++ + +KK+KE+E+ K +K K K
Sbjct: 380 TKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 35.7 bits (83), Expect = 0.012
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K KK + E++EK+K+K + +++ ++ + K++K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 34.5 bits (80), Expect = 0.027
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
T + K E++E+E++K K K+ K K +K
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 39.6 bits (93), Expect = 7e-04
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKK----KKKKEEEEKKKEKEKEKKKK 208
V K ++ E ++EKEE+E +++ K KK+EE+KKKE EK +K K
Sbjct: 544 VWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 30.4 bits (69), Expect = 0.86
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+++EE +++K+E+E K++K K KK+++ +KE
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 190 KKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K ++EE ++EKE+++ K++K +RK +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKK 574
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/36 (33%), Positives = 28/36 (77%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+++E+ +++KEE+E KE+++ +K KK++ +K+E
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 28.1 bits (63), Expect = 4.6
Identities = 10/40 (25%), Positives = 30/40 (75%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K +++EE +++K+++E K++++ ++ KK+++K ++ E
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 39.2 bits (92), Expect = 9e-04
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 6/48 (12%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEK---EKEKK---KKKKKIMRK 215
++E++EE +E+K++KKKEE E K K E+++K K++KK RK
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 37.6 bits (88), Expect = 0.003
Identities = 15/54 (27%), Positives = 34/54 (62%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E K E+++++E +E++E+KKK++ E + K +E++K ++K +K+
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 37.2 bits (87), Expect = 0.004
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+K +K EEEEEK K EEE ++E+ +EKK++KKK R+ +
Sbjct: 259 RKVDKTREEEEEKILKAAEEE--RQEEAQEKKEEKKKEEREAKL 300
Score = 36.8 bits (86), Expect = 0.005
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 169 TNNVTEK-KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ V K K +EEEEE+ K ++E +E+ +EK++EKKK++++ +
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 35.7 bits (83), Expect = 0.014
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 166 VTKTNNVTEKKKEKE-EEEEEEKKKKKKEEEEKKKEKEKEKK---KKKKKIMRKE 216
V KT E+K K EEE +E+ ++KKEE++K++ + K K ++++K+ KE
Sbjct: 261 VDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKE 315
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 39.3 bits (91), Expect = 0.001
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 157 RPISGQYEIVTKTNNVTEKKKEKEEE-----EEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+P++ ++ + + E K E+ E++ KK KKKE++EK+KE++K+KKK+ +
Sbjct: 165 KPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 34.3 bits (78), Expect = 0.041
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
N T K EK + EKK KK +++EKK EKEKE+ K KKK + ++
Sbjct: 180 NAETSKSPEKGDVPAVEKKSKKPKKKEKK-EKEKERDKDKKKEVEGFKS 227
Score = 30.0 bits (67), Expect = 1.1
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
V+ T +E + K+ E EE KK K ++++++KEKE++KKKKK
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 29.3 bits (65), Expect = 1.7
Identities = 9/28 (32%), Positives = 25/28 (89%)
Query: 184 EEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EEE++ +++ E++K+++K++EK+K+ ++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRR 112
Score = 28.9 bits (64), Expect = 2.4
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
T + + + ++ ++ E E+ KK + ++KK+ KEKE+KKKKKK
Sbjct: 252 NTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 28.9 bits (64), Expect = 2.4
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EEE +++ ++++ +KK++EKEK+ +++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 27.0 bits (59), Expect = 9.8
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+SG + +E ++ + +KKK++KE+EEKKK+K+ + E+
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQ 312
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 38.8 bits (90), Expect = 0.001
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 36 LTQLEHPNIVKFHR-YWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
L +++HPNIV F + D H + + EY G L Q +K + K P +
Sbjct: 52 LAKMKHPNIVAFKESFEADGH-----LYIVMEYCDGGDLMQKIKLQRG--KLFPEDTILQ 104
Query: 95 WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
W Q+ + ++H ++H ++ IF+ NG VK+G
Sbjct: 105 WFVQMCLGVQHIHE--KRVLHRDIKSKNIFLTQNGKVKLG 142
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK-KKKKIMRKEEN 218
+++ E++ E+E +E E++ + + E K++K++E K K +K K E
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEP 143
Score = 36.7 bits (85), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEE-EEKKKEKEKEKKKKKKKI 212
T+ + E ++E E + E K+KKK E + K EKEK K + KK
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 35.1 bits (81), Expect = 0.009
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKK----KEKEKEKKKKKKK 211
T++ ++++ E + + K+KK+ E K KEK K + KK K
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 32.8 bits (75), Expect = 0.053
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
T+ + E K E +E+++ E K K E+ EK K + K+ K K K
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEK-EKPKTEPKKPKPSKPK 152
Score = 32.4 bits (74), Expect = 0.072
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E +EEEE E++ + E+E E + E K+KKK+
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKR 127
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 38.8 bits (91), Expect = 0.001
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 36 LTQLEHPNIVK----FHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSA 91
L EHPNIV+ H TD + + E++ L +L + K L
Sbjct: 55 LESFEHPNIVRLLDVCHGPRTDRELK---LTLVFEHVDQ-DLATYLSK----CPKPGLPP 106
Query: 92 WK-RWCS-QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ Q+L + +LHS I+H +L I + +G VKI
Sbjct: 107 ETIKDLMRQLLRGVDFLHSHR--IVHRDLKPQNILVTSDGQVKI 148
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 39.4 bits (93), Expect = 0.001
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 144 NKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK 203
KK+L + Y + G +I + ++ E+ ++ E ++EEE +K KE E K+ E
Sbjct: 140 KKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEA 199
Query: 204 EKKKKKKKIMRKEEN 218
EKKK+ K KE
Sbjct: 200 EKKKQSKNFDPKEGP 214
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
K E+ EE E KEEE + EK++ KKKK
Sbjct: 162 AKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 34.2 bits (79), Expect = 0.022
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+ K EE EE + +EE+ E EK++ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.3 bits (74), Expect = 0.13
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E K K EE ++ + ++++ E EKK+ KKK
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 38.9 bits (90), Expect = 0.001
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 64 ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
+ E++ G+L + +T+ N +++ C +L AL YLHS +IH ++ D+I
Sbjct: 96 LMEFLQGGALTDIVSQTRLNEEQIATV-----CESVLQALCYLHSQG--VIHRDIKSDSI 148
Query: 124 FIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTE 174
+ +G VK+ + I K + + G P E++++T TE
Sbjct: 149 LLTLDGRVKLSDFGFCAQIS--KDVPKRKSLVGTPYWMAPEVISRTPYGTE 197
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 38.7 bits (90), Expect = 0.001
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 2 DTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRV 61
E+G + V E+ S+ K +EE ++V L+ ++HPNIV++ + + N +
Sbjct: 21 SKEDGKQYVIKEINISKMSP-KEREESRKEV-AVLSNMKHPNIVQYQESFEENGN----L 74
Query: 62 IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCD 121
+ +Y G L + K + P W QI AL ++H I+H ++
Sbjct: 75 YIVMDYCEGGDL--YKKINAQRGVLFPEDQILDWFVQICLALKHVH--DRKILHRDIKSQ 130
Query: 122 TIFIQHNGLVKIG 134
IF+ +G +K+G
Sbjct: 131 NIFLTKDGTIKLG 143
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 38.6 bits (90), Expect = 0.001
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 34 ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV--KKLPLSA 91
E L L+H NIVK+ + + + EY+ GSL+ +L++ + + +KL L A
Sbjct: 57 EILKSLQHDNIVKYKGVCYSA--GRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYA 114
Query: 92 WKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
QI + YL S +H +L I ++ VKIG
Sbjct: 115 S-----QICKGMEYLGSKR--YVHRDLATRNILVESENRVKIG 150
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 38.4 bits (90), Expect = 0.001
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L HPNIV+ D + + ++ + E++ LK+++ + L K +
Sbjct: 52 LKELNHPNIVRLL----DVVHSENKLYLVFEFLDL-DLKKYMDSSPLT--GLDPPLIKSY 104
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG-----------CDTYTHTI 142
Q+L ++Y HS ++H +L + I G +K+ TYTH +
Sbjct: 105 LYQLLQGIAYCHSHR--VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEV 160
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 38.4 bits (90), Expect = 0.001
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 36 LTQLEHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
L Q + P IVK++ Y+ +T + + EY +GS+ +K T + + + ++A
Sbjct: 52 LKQCDSPYIVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIMKITNKTLTEEEIAAI-- 104
Query: 95 WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
Q L L YLHS IH ++ I + G K+
Sbjct: 105 -LYQTLKGLEYLHSNK--KIHRDIKAGNILLNEEGQAKL 140
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 38.7 bits (90), Expect = 0.001
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 38 QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCS 97
Q +HPNI+ T +P V+ ITE+M +G+L FL++ + L R
Sbjct: 61 QFDHPNIIHLEGVVT---KSRP-VMIITEFMENGALDSFLRQNDGQFTVIQLVGMLR--- 113
Query: 98 QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
I + + YL + +H +L I + N + K+
Sbjct: 114 GIAAGMKYLSEMN--YVHRDLAARNILVNSNLVCKV 147
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 38.5 bits (89), Expect = 0.002
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 64 ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTI 123
+ E++ G+L + T+ N +++ C +L ALSYLH+ +IH ++ D+I
Sbjct: 97 VMEFLEGGALTDIVTHTRMNEEQIATV-----CLSVLRALSYLHNQG--VIHRDIKSDSI 149
Query: 124 FIQHNGLVKIG----CDTYTHTIENKKYLSAT 151
+ +G +K+ C + + +K L T
Sbjct: 150 LLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGT 181
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 38.1 bits (89), Expect = 0.002
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+T L HPN+V+ P I +TEYM+ GSL +L+ R V + L+ +
Sbjct: 54 MTTLRHPNLVQLLGVVLQ---GNPLYI-VTEYMAKGSLVDYLRSRGRAV--ITLAQQLGF 107
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ + YL +H +L + + + + K+
Sbjct: 108 ALDVCEGMEYLE--EKNFVHRDLAARNVLVSEDLVAKV 143
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 38.0 bits (88), Expect = 0.002
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 59 PRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQIL-SALSYLHSCSPPIIHGN 117
I + E++ G L L++ K V AWK +Q L SALSYL + ++HGN
Sbjct: 89 SENIMVEEFVEHGPLDVCLRKEKGRVP----VAWKITVAQQLASALSYLEDKN--LVHGN 142
Query: 118 LTCDTIFIQHNGL 130
+ I + GL
Sbjct: 143 VCAKNILLARLGL 155
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 38.0 bits (89), Expect = 0.002
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 27 EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQFLKRTKRNVK 85
E IQQ L + HPNIV + + DK ++I EY GSL+ + T+ +
Sbjct: 45 EIIQQEISMLKECRHPNIVAYFGSY--LRRDK---LWIVMEYCGGGSLQDIYQVTRGPLS 99
Query: 86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+L ++ C + L L+YLH IH ++ I + +G VK+
Sbjct: 100 ELQIA---YVCRETLKGLAYLHETG--KIHRDIKGANILLTEDGDVKLA 143
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 37.8 bits (88), Expect = 0.002
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ +L+H NIV+ H D + + +++ + EYM LK+++ T L + K +
Sbjct: 52 MKELKHENIVRLH----DVIHTENKLMLVFEYM-DKDLKKYMD-THGVRGALDPNTVKSF 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
Q+L +++ H ++H +L + I G +K+
Sbjct: 106 TYQLLKGIAFCHENR--VLHRDLKPQNLLINKRGELKLA 142
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
Y K ++ EK ++E EEK+K K ++++ KK+K+K+K KK K K E
Sbjct: 57 YTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEK 112
Score = 35.1 bits (81), Expect = 0.014
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+KKK K+++++++ KK K++++ +K+ EKE + K + +
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDL 125
Score = 33.5 bits (77), Expect = 0.042
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ +YE K +K K+K+++++++K KK ++ EKK EKE E K + E
Sbjct: 74 VKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 32.7 bits (75), Expect = 0.086
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+K +K K+ ++++++ +KK +KE E+K ++ K + +
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 37.8 bits (88), Expect = 0.002
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 23 KAQEEKIQQVF----ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK 78
K ++E +Q F + +L H N+V+ + +P + I EY G LKQFL+
Sbjct: 45 KTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREA---EPHYM-ILEYTDLGDLKQFLR 100
Query: 79 RTKRNVKKL---PLSAWKR--WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
TK +KL PLS ++ C+QI + +L + +H +L + VK+
Sbjct: 101 ATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR--FVHRDLAARNCLVSSQREVKV 158
Query: 134 GCDTYTHTIENKKY 147
+ + + N +Y
Sbjct: 159 SLLSLSKDVYNSEY 172
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 37.9 bits (88), Expect = 0.002
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 23 KAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
K EK Q + + L QL HPN +++ + H + EY GS L+
Sbjct: 53 KQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHT----AWLVMEY-CLGSASDILEV 107
Query: 80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
K+ ++++ ++A C L L+YLHS IH ++ I + G VK+
Sbjct: 108 HKKPLQEVEIAAI---CHGALQGLAYLHSHE--RIHRDIKAGNILLTEPGTVKLA 157
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.7 bits (86), Expect = 0.003
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEE------EEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+ G+ EI ++ E+ K+ +E +++E K +K E++ +K K K +KKK
Sbjct: 35 KKGKKGELEIT----DLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKA 90
Query: 210 KKIMRK 215
KK K
Sbjct: 91 KKEEPK 96
Score = 34.0 bits (79), Expect = 0.020
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K+E + EK +KK E+ + K EK+K KK++ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 33.3 bits (77), Expect = 0.045
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
KKE + E+ EKK +K + + +KK+ +KE+ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 30.2 bits (69), Expect = 0.47
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K EK E KK +K + + +K+K K+++ K +
Sbjct: 69 KAWEKAE------KKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 38.1 bits (88), Expect = 0.003
Identities = 17/57 (29%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 155 YGRPISGQYEIVTKTNNVTEK-KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
Y P++ ++ K EK K+E E++ EE++++K++E+E+++E+E+E ++ K
Sbjct: 568 YFTPLASS-KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 37.4 bits (86), Expect = 0.005
Identities = 14/38 (36%), Positives = 31/38 (81%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+K++E E+ + E ++K +EE E++KEKEKE+++++++
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 34.7 bits (79), Expect = 0.037
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 176 KKEKEEEEEEEKKKKKKEE---EEKKKEKEKEKKKKKKKIMRKEEN 218
K K+ EE EK K++ E+ EE+++EKEKEK++++++ E
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERA 621
Score = 33.9 bits (77), Expect = 0.057
Identities = 14/42 (33%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 174 EKKKEKEEEEEEEKKKKKKE-EEEKKKEKEKEKKKKKKKIMR 214
E+ EK + E E+K ++++E E+EK+KE+E+E++++ ++ +
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 32.0 bits (72), Expect = 0.24
Identities = 13/42 (30%), Positives = 30/42 (71%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K +K EE E+ K++ +++ +++E+EKEK+K++++ +E
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERERE 617
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 38.0 bits (89), Expect = 0.003
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+KK ++EE E+ KKK E KK + + KK
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 36.8 bits (86), Expect = 0.005
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+KK ++++ + EKK +K+E E+ +K+ E KK K
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 36.8 bits (86), Expect = 0.007
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K ++K E+EE EK KK+ E K+ + + KK
Sbjct: 420 KAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 36.4 bits (85), Expect = 0.007
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+KK+++ E++ EK++ +K +KK E +K K +K
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 35.3 bits (82), Expect = 0.020
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + E +K +KK+ + EKK EKE+ +K KK
Sbjct: 400 EGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKK 437
Score = 32.6 bits (75), Expect = 0.14
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 174 EKKKEKEEEEEEEKKK---KKKEEEEKKKEKEKEKKKKKKK 211
E++ E E+KK K+++ E+K +++E EK KKK
Sbjct: 398 EEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKK 438
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+++E E ++KK ++++K EK+ EK++ +K
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEK 432
Score = 27.6 bits (62), Expect = 5.5
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKK---EEEEKKKEKEKEKKKKKKK 211
E ++ +K++K + E+EE +K K+K + K
Sbjct: 400 EGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 26.8 bits (60), Expect = 9.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K E EEEE + E+KK ++K++K +KK KEE
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKA--EKEE 429
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 37.4 bits (87), Expect = 0.003
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR- 94
L L H NI+ + + P V++ YM+ G+LK FL++ + P + +
Sbjct: 62 LYGLSHQNILPILHVCIEDG-EPPFVLY--PYMNWGNLKLFLQQCRLGEANNPQALSTQQ 118
Query: 95 ---WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
QI +SYLH +IH ++ I VKI D
Sbjct: 119 LVHMAIQIACGMSYLHKRG--VIHKDIAARNCVIDEELQVKI-TD 160
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 38.0 bits (88), Expect = 0.003
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ ++K EEE ++KKKKEE+ K+KE +K K +K+ + +
Sbjct: 4 TESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQA 49
Score = 35.3 bits (81), Expect = 0.025
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKK--KKKEEEEKK-KEKEKEKKKKKK 210
++T + EKK EEE E +KKK K KE+E KK K +KE K K +
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 34.9 bits (80), Expect = 0.029
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK-------KKKKKKIMRKEE 217
+KKKE++ +E+E KK K ++E K K + ++ KK +KK +++
Sbjct: 21 KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDV 71
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 37.5 bits (87), Expect = 0.003
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+KK+ EE ++ K+K+ EE K K K + + R
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAA 158
Score = 34.8 bits (80), Expect = 0.027
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E++K+KE+++ EE ++K+ E+E+ K+ EKE+ +++ + EE
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEE 122
Score = 33.2 bits (76), Expect = 0.072
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ K+ E+E +++KK+ EE K+ K+K+ ++
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 32.9 bits (75), Expect = 0.11
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+KK E E +++ + KKK E K K + K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 30.5 bits (69), Expect = 0.61
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K K + E + KK E KKK + + KK + +K E
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAE 188
Score = 30.2 bits (68), Expect = 0.78
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++K+ E+E ++ +K++ +E+KK+ E+ K+ K + EE
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Score = 29.8 bits (67), Expect = 0.96
Identities = 7/44 (15%), Positives = 30/44 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+++ +E ++++ ++++ ++ EK++ +E+KK+ ++ ++
Sbjct: 85 EQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAA 128
Score = 29.0 bits (65), Expect = 1.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K E +++ E + KKK E KK+ E K K
Sbjct: 193 AKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E +++ E E KKK E +KK E + K K
Sbjct: 196 AAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Score = 28.6 bits (64), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
KK E +++ E + K E KK+ E E KKK +K+
Sbjct: 176 AKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 28.2 bits (63), Expect = 3.3
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ K++ E K K E K EK K +
Sbjct: 212 AAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAE 248
Score = 28.2 bits (63), Expect = 3.4
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+KK E +++ + K + + K +K K K
Sbjct: 208 KKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAA 251
Score = 27.8 bits (62), Expect = 4.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 174 EKKKEKEEEEEEEKK----KKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+ K+K E E +K KKK E E K + KKK + + +K
Sbjct: 165 AEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKK 210
Score = 27.8 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
KK E +++ E + KK E KK+ E E K
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAK 194
Score = 27.5 bits (61), Expect = 5.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
E K+ ++ + KKK E E K+ E KKK
Sbjct: 152 EAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 37.5 bits (87), Expect = 0.003
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 52 TDTHNDKPRVIFITEYMSSGSLKQFLKRTKR-NVKKLPLSAWKRWCSQILSALSYLHSCS 110
+ N KP + + EY+ S LK+F+ R + LP K + Q+L +++ H
Sbjct: 72 VEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG 130
Query: 111 PPIIHGNLTCDTIFI-QHNGLVKIG-----------CDTYTHTI 142
++H +L + + + GL+KI +YTH I
Sbjct: 131 --VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEI 172
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 37.3 bits (87), Expect = 0.004
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
++Q HPN+VK++ + +++ Y+S GSL +K + L +
Sbjct: 53 MSQCNHPNVVKYYTSFVVGD-----ELWLVMPYLSGGSLLDIMK-SSYPRGGLDEAIIAT 106
Query: 95 WCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
++L L YLHS IH ++ I + +G VKI
Sbjct: 107 VLKEVLKGLEYLHSNG--QIHRDIKAGNILLGEDGSVKIA 144
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 37.1 bits (86), Expect = 0.004
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 44/165 (26%)
Query: 28 KIQQVF---ENLTQLEHPNIVK-FHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN 83
+IQQVF + LT E+P +V F + T H + + EY+ G LK N
Sbjct: 44 QIQQVFVERDILTFAENPFVVSMFCSFETKRH-----LCMVMEYVEGGDCATLLK----N 94
Query: 84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHN--------GLVKIG- 134
+ LP+ + + ++ + AL YLH+ I+H +L D + I GL KIG
Sbjct: 95 IGALPVDMARMYFAETVLALEYLHNYG--IVHRDLKPDNLLITSMGHIKLTDFGLSKIGL 152
Query: 135 ----CDTYTHTIENK------KYLSAT----------RQTYGRPI 159
+ Y IE K + T RQ YG+P+
Sbjct: 153 MSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPV 197
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 37.2 bits (86), Expect = 0.004
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K + E++KEKE+ +EE+KKKK+K +EE K K KE+ K+K+ KE+
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 36.0 bits (83), Expect = 0.013
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KKK+++ +EE + +K K+E +EK+ KEKEK+K+KK
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 34.5 bits (79), Expect = 0.034
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 174 EKKKEKEEEEEEEKK-KKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+KKKEK +EE +++K K++ +E+ KEKEKEK+KK ++ +EE
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 34.1 bits (78), Expect = 0.047
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
KT E K E +EEE+EK++ K+E+++KK++ ++E K +K K KE+
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 33.7 bits (77), Expect = 0.068
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ EKK E+ + EEEKK+++ + + K+ K+K KKK +EE
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Score = 33.7 bits (77), Expect = 0.072
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KEKE+E+E++ ++ + EEEKK+E+ + K + KK +K N
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
Score = 32.9 bits (75), Expect = 0.11
Identities = 14/46 (30%), Positives = 33/46 (71%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K+E++E+E+ +++KKKK+E+ K++ K+++ K++ K+ +E
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Score = 32.6 bits (74), Expect = 0.14
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
V K + K K +E + + K++E+E+++ ++EK+KKK+K K
Sbjct: 80 VEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 32.6 bits (74), Expect = 0.15
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K E+ KEK +E+EK+K+KK EE + +E+EK++++ + K
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 32.6 bits (74), Expect = 0.17
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E V + K + + +E K + +EEEK+KE+ KE+KKKKK+ ++E
Sbjct: 75 EAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEP 128
Score = 31.4 bits (71), Expect = 0.37
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ E + K KE + E K+++K++E+ K+++K+K++K K++ RK +
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 30.2 bits (68), Expect = 0.81
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EKK+E+ + KK KK+ KKKE +E+K+++
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Score = 30.2 bits (68), Expect = 0.90
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 157 RPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEE-EKKKEKEKEKKKKKKKIMRK 215
+ + K+ + E +EEEK+K++ +EE +KKKEK KE+ K +K
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 216 EE 217
+E
Sbjct: 138 KE 139
Score = 29.5 bits (66), Expect = 1.5
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K+KEKE+E++ E+ + ++EE+++++ + K + KK K
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
Score = 28.7 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E K K +EE +EK+ K++E+EK+K+ E+ + ++++K
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Score = 27.5 bits (61), Expect = 5.4
Identities = 12/45 (26%), Positives = 32/45 (71%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K KE+ +E+ K+K+K++E++ ++ +++E++KK++++ K
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 27.5 bits (61), Expect = 6.3
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K ++ +EE +E++ K+KE+E++KK +E ++++KK R
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 36.8 bits (85), Expect = 0.004
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 23 KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
K + Q + L L HPNI++ Y+ + DK +I + EY G+L +++++
Sbjct: 40 KDERLAAQNECQVLKLLSHPNIIE---YYENFLEDKALMI-VMEYAPGGTLAEYIQKRCN 95
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI-QHNGLVKIG 134
++ L + QIL AL ++H + I+H +L I + +H +VKIG
Sbjct: 96 SL--LDEDTILHFFVQILLALHHVH--TKLILHRDLKTQNILLDKHKMVVKIG 144
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/37 (37%), Positives = 28/37 (75%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
E K ++E+ ++EE +KK+KE+ ++ KEK ++ ++KK
Sbjct: 398 AEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 37.1 bits (86), Expect = 0.004
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ K V ++ EE E + K++K K+EE +KK+KE+ + K+K+
Sbjct: 380 DYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427
Score = 34.4 bits (79), Expect = 0.039
Identities = 14/48 (29%), Positives = 34/48 (70%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+ +T+ E + + +EE+ ++++ +KK++E+ ++KEK +K ++KK
Sbjct: 387 EVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 33.6 bits (77), Expect = 0.056
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 164 EIVTKTNNVTEKKKEK-EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++ T + E K E EE E K K++K ++E+ ++K+KE+ + K+ +K+E
Sbjct: 377 KLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 32.8 bits (75), Expect = 0.11
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E K + T+K E ++E + ++ + K +EEK K++E EKK+K++ KE
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Score = 29.8 bits (67), Expect = 1.0
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ +K ++ ++ E K + EE + K KE++ K+++ + +KE+
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 37.4 bits (86), Expect = 0.004
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
V E+ K++EE+E E ++ KEEE KKEKE+E++ +K
Sbjct: 1022 VKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTI 1061
Score = 31.2 bits (70), Expect = 0.39
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ K++ K++EE+E + ++ +EE+ +KEKE++++ +K
Sbjct: 1019 DRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRK 1059
Score = 30.5 bits (68), Expect = 0.75
Identities = 9/53 (16%), Positives = 30/53 (56%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ + K +++KE+ E + K+++ ++E++++++ ++ K M K+
Sbjct: 1019 DRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKK 1071
Score = 27.8 bits (61), Expect = 5.4
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
E++ K+E+E E++ +K + K+ K++ KKK+
Sbjct: 1043 EEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 27.4 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
V + +EK E ++ K++ K++EEK++ E ++ K+++I +KE+
Sbjct: 1007 VPPECREKHEIKDRIVKERIKDQEEKER-MESLQRAKEEEIGKKEK 1051
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 35.7 bits (83), Expect = 0.005
Identities = 18/48 (37%), Positives = 37/48 (77%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++ EK++EKE E+EE+++K++KE+E K +KE+++K+ + + K +N
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
Score = 29.2 bits (66), Expect = 0.84
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKK-----KEEEEKKKEKEKEKKKKKKKIMR 214
I+ EK++EKEE+E +E+K+K+ ++EE++K E+ +K K K + R
Sbjct: 11 IIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLAR 65
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 36.7 bits (85), Expect = 0.005
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E +E+ + E + + + K++ + EKK KK K K +
Sbjct: 58 PEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104
Score = 34.4 bits (79), Expect = 0.025
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ + + ++K K +++ +K K K K K K K K+
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 32.8 bits (75), Expect = 0.10
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ K++ + E++ +K K K + + K K K K + K KK
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 32.1 bits (73), Expect = 0.16
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKE-EEEKKKEKEKEKKKKKKKIMRKEE 217
E K E E + +EK K +K+ ++ K K K K K K K K K +
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Score = 31.3 bits (71), Expect = 0.30
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ + E + K+K K E++ KK K K K K K K K +
Sbjct: 72 EPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 30.9 bits (70), Expect = 0.43
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ T + + EE+ + + + E K KEK K +KK K + +
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Score = 30.5 bits (69), Expect = 0.53
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
T K +++ + E++ KK K + + K K K K K + K K
Sbjct: 80 TPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119
Score = 30.5 bits (69), Expect = 0.57
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EKK +K + + + K K K + + + K K+ K K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 27.8 bits (62), Expect = 3.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKK--EKEKEKKKKKKKIMRKEE 217
TE+ + + E EE+ K + E + K KEK K +KK + +
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKP 99
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 36.3 bits (84), Expect = 0.005
Identities = 16/33 (48%), Positives = 27/33 (81%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ + E+K KKKK E++K+++K+K++KKKKKK
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 36.0 bits (83), Expect = 0.007
Identities = 17/34 (50%), Positives = 28/34 (82%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + E++ KKKK E+++++K+K+KEKKKKKK+
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 33.3 bits (76), Expect = 0.048
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ E + EKK KKK+ E+ K+ K+K+K+KKKKK
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Score = 32.5 bits (74), Expect = 0.10
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E + +KK KK++ E KE++K+KK+KKKK R
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 30.2 bits (68), Expect = 0.52
Identities = 13/35 (37%), Positives = 28/35 (80%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
++ EKK +K++ E+++++KKKK+E++KKK++
Sbjct: 134 SEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 30.2 bits (68), Expect = 0.60
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
K K+K+ E+++E+KKKKKE+++KKK E
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 37.0 bits (86), Expect = 0.005
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 23 KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
KA +E + + + + ++HP++V+ +V IT+ M G L +++ K
Sbjct: 51 KANKEILDEAYV-MASVDHPHVVRLLGICL-----SSQVQLITQLMPLGCLLDYVRNHKD 104
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
N+ L WC QI +SYL ++H +L + ++ VKI
Sbjct: 105 NIGSQYL---LNWCVQIAKGMSYLEEKR--LVHRDLAARNVLVKTPQHVKI 150
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 37.0 bits (85), Expect = 0.005
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 27 EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
E Q + + +L H +V+ + +++P + +TEYMS GSL FLK +
Sbjct: 46 EAFLQEAQVMKKLRHEKLVQLYA----VVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLR 100
Query: 87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
LP +QI S ++Y+ + +H +L I + N + K+ IE+ +
Sbjct: 101 LP--QLVDMAAQIASGMAYVERMN--YVHRDLRAANILVGENLVCKVADFGLARLIEDNE 156
Query: 147 YLSATRQTYGRPI 159
Y + RQ PI
Sbjct: 157 YTA--RQGAKFPI 167
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 36.5 bits (84), Expect = 0.005
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ L+H +VK H T K + ITE+M+ GSL FLK + + K PL +
Sbjct: 55 MKTLQHDKLVKLHAVVT-----KEPIYIITEFMAKGSLLDFLKSDEGS--KQPLPKLIDF 107
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLS 149
+QI ++++ + IH +L I + + + KI IE+ +Y +
Sbjct: 108 SAQIAEGMAFIEQRN--YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 159
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 36.8 bits (86), Expect = 0.006
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KKE E +EE K + E E + KE+ E ++ +++++++EE
Sbjct: 47 TLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREET 91
Score = 29.5 bits (67), Expect = 1.3
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
E + + +KK+E E++E+E K+K +EK++E E+ ++++++ R
Sbjct: 90 ETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140
Score = 29.1 bits (66), Expect = 1.8
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ E KKE E ++E + K+E + + E E+E K+++ ++ R E
Sbjct: 38 IEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLER 83
Score = 28.7 bits (65), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 171 NVTEKKKEKEEEEEEE-KKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ EKK EE + ++ KKE E KKE E K++ K+ + E
Sbjct: 21 RIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELER 69
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 36.3 bits (84), Expect = 0.007
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 20 KNFKAQEEKIQQVF----ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
K K+ + QQ F + L +L H +++ + +P V ITE M GSL
Sbjct: 36 KILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCS---VGEP-VYIITELMEKGSLLA 91
Query: 76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
FL+ + + LP+++ Q+ ++YL + IH +L I + + + K+
Sbjct: 92 FLRSPEG--QVLPVASLIDMACQVAEGMAYLEEQN--SIHRDLAARNILVGEDLVCKVA 146
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 36.4 bits (85), Expect = 0.007
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 21/107 (19%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFIT-EYMSSGSLKQFLKRTKRN-----VKKLPL 89
L +L+HPNIV ++ DK I++ EY+ LK ++ K+ VK L L
Sbjct: 58 LLKLQHPNIVTVKEVVVGSNLDK---IYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLML 113
Query: 90 SAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
Q+LS +++LH I+H +L + + + G++KI CD
Sbjct: 114 --------QLLSGVAHLHDNW--ILHRDLKTSNLLLNNRGILKI-CD 149
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 36.6 bits (85), Expect = 0.007
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E K + KK +KE++ E KKK +K++++KK++KE + + + K +
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Score = 36.2 bits (84), Expect = 0.010
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 166 VTKTNNVTEKKKEK------EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
V T+ +KK++K + E++++KKK+KKE + + + K K KK K
Sbjct: 49 VATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 35.5 bits (82), Expect = 0.015
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ NN ++KK EK++++++EKK+ K E E K K +K KK KK K +
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111
Score = 34.7 bits (80), Expect = 0.025
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K + +KKK+KE++E + + + K + KK K+ +KK K K +N
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Score = 33.9 bits (78), Expect = 0.055
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 144 NKKYLSATRQTYGRPISGQYE--IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
+ + + +PIS Y +V ++ +E+ + KK KKE++ + +K
Sbjct: 10 SFFSGTTQKSK-LQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKK 68
Query: 202 EKEKKKKKKKIMRKEEN 218
+ EKKKKKKK ++ ++
Sbjct: 69 KSEKKKKKKKEKKEPKS 85
Score = 33.5 bits (77), Expect = 0.070
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
T + + KKE + E ++K +KKK+++++KKE + E + K K+
Sbjct: 49 VATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 33.2 bits (76), Expect = 0.083
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ +KK+K+++E++E K + + + K K+ +K KKK + E+
Sbjct: 63 NNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 36.9 bits (85), Expect = 0.007
Identities = 15/29 (51%), Positives = 28/29 (96%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
+E+EEEEEEE++++++EEEE+++E+E E+
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 36.5 bits (84), Expect = 0.008
Identities = 14/31 (45%), Positives = 29/31 (93%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+ ++E+EEEEEEE++++++EEEE+++E+ +E
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 36.5 bits (84), Expect = 0.010
Identities = 14/29 (48%), Positives = 28/29 (96%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
E+EEEEEEE++++++EEEE+++E+E+ ++
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 36.1 bits (83), Expect = 0.010
Identities = 14/30 (46%), Positives = 29/30 (96%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
+E+++E+EEEEEEE++++++EEEE+++ +E
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 36.1 bits (83), Expect = 0.012
Identities = 14/31 (45%), Positives = 29/31 (93%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
+ EEEEEEE++++++EEEE+++E+E+E+ ++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 33.4 bits (76), Expect = 0.091
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E+++E+EEEEEEE++++++EE E+ E + ++K+ I
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAI 907
Score = 33.4 bits (76), Expect = 0.097
Identities = 13/29 (44%), Positives = 28/29 (96%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
EEEEEE++++++EEEE+++E+E+E++ ++
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 33.0 bits (75), Expect = 0.11
Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+++E+EEEEEEE++++++EEEE ++ E + ++K
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
Score = 32.3 bits (73), Expect = 0.20
Identities = 12/31 (38%), Positives = 29/31 (93%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+ EEEEE++++++EEEE+++E+E+E+++ ++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 35.4 bits (82), Expect = 0.007
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++K+E+++ ++EEK KK+ + +KKK+K+K+KKK KK
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 32.7 bits (75), Expect = 0.055
Identities = 19/45 (42%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEK--KKKKKKIMRKEEN 218
KKE E+EE ++K+++KK ++E+K K++ K KKK+KK +K+
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 36.7 bits (85), Expect = 0.007
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 33 FENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAW 92
++ +L+HPNIVK + I EY+ +L + L RN+ +W
Sbjct: 734 IADMGKLQHPNIVKL----IGLCRSEKGAYLIHEYIEGKNLSEVL----RNL------SW 779
Query: 93 KR---WCSQILSALSYLH-SCSPPIIHGNLTCDTIFI 125
+R I AL +LH CSP ++ GNL+ + I I
Sbjct: 780 ERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIII 816
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 36.1 bits (84), Expect = 0.008
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 36 LTQLEHPNIVK----FHRYWTDTHNDKPRVIFITEYMS---SGSLKQFLKRTKRNVKKLP 88
L +L+HPN+V + + V +T YM SG L+ +VK L
Sbjct: 61 LKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLEN------PSVK-LT 113
Query: 89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
S K + Q+L ++YLH I+H ++ I I + G++KI
Sbjct: 114 ESQIKCYMLQLLEGINYLHENH--ILHRDIKAANILIDNQGILKI 156
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 36.0 bits (83), Expect = 0.008
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 1 MDTEEGVEVVWNEVQFSERKNFKAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPR 60
+D G EV ++ + + ++E I + + +HPNIV + D++
Sbjct: 39 IDVATGQEVAIKQMNLQQ----QPKKELIINEILVMRENKHPNIVNY----LDSYLVGDE 90
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
+ + EY++ GSL + T + ++ C + L AL +LHS +IH ++
Sbjct: 91 LWVVMEYLAGGSLTDVVTETCMDEGQIAAV-----CRECLQALEFLHSNQ--VIHRDIKS 143
Query: 121 DTIFIQHNGLVKI 133
D I + +G VK+
Sbjct: 144 DNILLGMDGSVKL 156
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 36.2 bits (84), Expect = 0.008
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 64 ITEYMSSGSLKQFLK------RTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGN 117
+ E M+ G LK +L+ + L + + ++I ++YL + +H +
Sbjct: 87 VMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK--FVHRD 144
Query: 118 LTCDTIFIQHNGLVKIG 134
L + + VKIG
Sbjct: 145 LAARNCMVAEDLTVKIG 161
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 35.8 bits (83), Expect = 0.009
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK-----EKEKKKKKKKIMRKEE 217
T++V ++ + E+ E EE++K+ +EE E+ E+ + K+K K M+KEE
Sbjct: 109 TSDVRKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEE 162
Score = 31.9 bits (73), Expect = 0.15
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E+K+++EE E + K + E+ + K+K KE +K++ + MR
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 35.0 bits (81), Expect = 0.009
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEK--KKKKKEEEEKKKEKEKEKKKKKKKIMR 214
+ E++ E EE +EEE+ + +KE + K+EK +E ++K+K+I++
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 35.0 bits (81), Expect = 0.010
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ E+++E+ E EE +++++ E EK+ K K +K+++ + +KE
Sbjct: 93 LLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 29.9 bits (68), Expect = 0.54
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+ V ++ ++EE+ +E +K+ + + +K+ + + K+K+ K K
Sbjct: 105 EEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 36.0 bits (83), Expect = 0.010
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ K+ EE++++ ++ K K+ E K + E E +KK K+ +K+
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 35.2 bits (81), Expect = 0.017
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 174 EKKKEKEEEEEEEKKK---KKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ K K E E E+K K KK+ EEE K + E KKK + +K E
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEA 177
Score = 34.8 bits (80), Expect = 0.021
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+ +E++++ E+ K K+ E K K + + +KK K++ ++ E
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAE 153
Score = 34.8 bits (80), Expect = 0.025
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EK ++ E+ ++ ++K+K+ EE K ++ E K K +
Sbjct: 101 EKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA 138
Score = 34.4 bits (79), Expect = 0.029
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K K E +++ + KKK E E K + E + K K ++ K E
Sbjct: 157 KAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 34.0 bits (78), Expect = 0.040
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+ E+++++ EE K K+ E + K E E EKK K++ + EE
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEE 154
Score = 33.3 bits (76), Expect = 0.088
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++ ++ ++ E+ K+ EE++K+ E+ K K+ + K K E
Sbjct: 96 QRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAK--AKAE 137
Score = 32.9 bits (75), Expect = 0.10
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 174 EKKKEKEEEE---EEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ K K+ E + E + +KK +EE KK+ E+E K K +K+
Sbjct: 122 EEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Score = 32.9 bits (75), Expect = 0.10
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ K+ E+ ++ ++K+K+ EE K K+ + K K + + +K +
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK 145
Score = 32.5 bits (74), Expect = 0.13
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EKK ++E +++ E++ K K E KK+ + KKK + + K E
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAE 184
Score = 32.1 bits (73), Expect = 0.18
Identities = 8/44 (18%), Positives = 30/44 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E++++K+ E++ E+ +K++ E+ ++++ +++ +K + E+
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQ 109
Score = 31.7 bits (72), Expect = 0.27
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+K+ E+E + + + KKK E KKK + + K K + K K E
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAE 192
Score = 31.3 bits (71), Expect = 0.33
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E K + K E + + + E+ K K E + K E K + +
Sbjct: 170 EAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAA 222
Score = 30.6 bits (69), Expect = 0.63
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ +++ E+ +K+ ++ +K K+ E+ K+ + +K+
Sbjct: 78 EEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQA 121
Score = 30.2 bits (68), Expect = 0.75
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 174 EKKKEKEEEEE---EEKKKKKKEEEEKKKEKEKEKK-----KKKKKIMRKEEN 218
E K + E E E +E+ KK+ EEE K K + KK KKK + K +
Sbjct: 131 EAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 29.8 bits (67), Expect = 1.0
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+K+ E+ +++ +++ E+ K+ E+ K+ ++K + EE
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA 124
Score = 29.0 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
KKK + E + + + K K + EE K + E K K + K E
Sbjct: 172 KKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAE 214
Score = 28.6 bits (64), Expect = 2.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E KK+ E +++ + + K + E K K K +E K K + K
Sbjct: 163 EAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAA 206
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ ++++ E+ +K K+ E+ K+ +EK+K+ ++ K + E
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132
Score = 28.3 bits (63), Expect = 3.4
Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEK---EKKKKKKKIMRKEE 217
E++K+ E++ EE +K++ E+ +K+ +++ EK K+ + K+
Sbjct: 68 ERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQA 114
Score = 27.5 bits (61), Expect = 5.3
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+K K+E+E ++K +++ EE EK++ E+ ++K+ ++ E+
Sbjct: 59 KKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEK 102
Score = 27.5 bits (61), Expect = 5.3
Identities = 13/54 (24%), Positives = 32/54 (59%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ + N + ++KK ++E+E +KK +++ EE +K++ E+ ++K+ R
Sbjct: 47 AVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA 100
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 36.1 bits (84), Expect = 0.010
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 176 KKEKEEEEEEEKKK-----KKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+E + EE K+K KKK EE+K ++++K+KK+KKK RK++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 33.4 bits (77), Expect = 0.075
Identities = 13/29 (44%), Positives = 25/29 (86%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ EEKK +K+++++K+K+K K++KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 32.2 bits (74), Expect = 0.18
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 170 NNVTEKKKEKEEEEEEE---------KKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ ++ KE+ + EE KKK+++++ +K+K+K+K KKK KK+ + +
Sbjct: 358 RYIGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 34.2 bits (79), Expect = 0.010
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKE 204
EE++++++EEEE+++E E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.1 bits (76), Expect = 0.029
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEE 195
++E+EEEEEEE+++++ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.6 bits (72), Expect = 0.079
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
+E+EEEEEEE++++++ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.11
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
E+EEEEEEE++++++E EE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 30.4 bits (69), Expect = 0.23
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKE 200
EEEEE++++++EEEE+ +E
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 26.5 bits (59), Expect = 5.5
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 185 EEKKKKKKEEEEKKKEKEKEKK 206
+++EEEE+++E+E+E+
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEES 92
Score = 26.2 bits (58), Expect = 6.2
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 191 KKEEEEKKKEKEKEKKKKKK 210
EEE+++E+E+E+++++
Sbjct: 73 AAAEEEEEEEEEEEEEEEES 92
Score = 26.2 bits (58), Expect = 6.7
Identities = 5/20 (25%), Positives = 16/20 (80%)
Query: 192 KEEEEKKKEKEKEKKKKKKK 211
EE+++E+E+E++++++
Sbjct: 73 AAAEEEEEEEEEEEEEEEES 92
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 35.7 bits (82), Expect = 0.011
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK--------RNVKKL 87
+++L++PNI+ R +D P + ITEYM +G L QFL + + N+ +
Sbjct: 71 MSRLKNPNII---RLLGVCVSDDP-LCMITEYMENGDLNQFLSQREIESTFTHANNIPSV 126
Query: 88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
++ QI S + YL S + +H +L + ++ +KI
Sbjct: 127 SIANLLYMAVQIASGMKYLASLN--FVHRDLATRNCLVGNHYTIKI 170
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 34.2 bits (79), Expect = 0.013
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
E+++EEEEE+++K++ EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.4 bits (77), Expect = 0.023
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKE 204
E+KK+++EEEE+K+E E+E
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 32.2 bits (74), Expect = 0.059
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
+E++EEEE++++K+E EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
Score = 31.1 bits (71), Expect = 0.15
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKE 204
++KK++EEEE++KE+ +E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEE 95
Score = 29.2 bits (66), Expect = 0.61
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKE 200
EE++++++++EE+E+ +E
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
Score = 28.8 bits (65), Expect = 0.77
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKE 200
EE++E++++++E+EE ++E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 27.6 bits (62), Expect = 2.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 192 KEEEEKKKEKEKEKKKKKK 210
EEKK+E+E+E++K++
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
Score = 26.8 bits (60), Expect = 4.7
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEK 205
++K+EEE+++E+++E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 26.5 bits (59), Expect = 5.6
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 191 KKEEEEKKKEKEKEKKKKK 209
EE+K++E+E+E+K++
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
Score = 26.5 bits (59), Expect = 6.4
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 184 EEEKKKKKKEEEEKKKEKEKEKK 206
++++EE+++E+EKE+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 26.1 bits (58), Expect = 6.7
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 190 KKKEEEEKKKEKEKEKKKKKKKIM 213
EE+++++E+E+EK++ +++
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAA 98
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 35.3 bits (81), Expect = 0.013
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+TQL H N+V+ + +K + +TEYM+ GSL +L+ R+V L ++
Sbjct: 53 MTQLRHSNLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGRSV--LGGDCLLKF 107
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ A+ YL + + +H +L + + + + K+
Sbjct: 108 SLDVCEAMEYLEANN--FVHRDLAARNVLVSEDNVAKV 143
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 35.4 bits (81), Expect = 0.013
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 34 ENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV--------- 84
E LT L+H +IVKF Y D +I + EYM G L +FL+ +
Sbjct: 59 ELLTNLQHEHIVKF--YGVCVEGDP--LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRP 114
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+L S QI + + YL S +H +L + N LVKIG
Sbjct: 115 AELTQSQMLHIAQQIAAGMVYL--ASQHFVHRDLATRNCLVGENLLVKIG 162
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 35.4 bits (82), Expect = 0.013
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 30 QQVFENLTQLEHPNIVKFHR-YWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
+++FE HP +V + T+ H V F+ EY + G L + +V P
Sbjct: 50 KRIFETANSERHPFLVNLFACFQTEDH-----VCFVMEYAAGGDL---MMHIHTDVFSEP 101
Query: 89 LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+ + C ++ L YLH I++ +L D + + G VKI
Sbjct: 102 RAVFYAAC--VVLGLQYLHENK--IVYRDLKLDNLLLDTEGFVKIA 143
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 36.1 bits (83), Expect = 0.013
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K N E K E E E ++ K+ EEK + KKKK
Sbjct: 804 KGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKK 847
Score = 34.2 bits (78), Expect = 0.057
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
K+K KE+ +++ K + E + E+ K++++K I
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGI 835
Score = 30.7 bits (69), Expect = 0.63
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
T K + +++ +EK KE + + E E ++ K ++
Sbjct: 790 TIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGI 835
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 35.9 bits (83), Expect = 0.015
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKK----KEEEEKKKEKEKEKKKKK 209
+ GQY + + + + EE+ +++ EE K+ KE + K K
Sbjct: 888 VKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 30.5 bits (69), Expect = 0.66
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 145 KKYLSATRQTYGRPIS-GQYEIVTKTNNVTE-----KKKEKEEEEEEEKKKKKKEEEEKK 198
K + Y I Q I + N V + K E + K +++ +++
Sbjct: 860 KHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQER 919
Query: 199 ----------KEKEKEKKKKKKK 211
++ KE + K K
Sbjct: 920 MPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 35.6 bits (83), Expect = 0.015
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
V E++ KEE + E +++ K E EE + +E+ K + E
Sbjct: 38 VEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Score = 35.2 bits (82), Expect = 0.021
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E +KE+ + E EE+ K + EE + +E+ K + +E
Sbjct: 42 EARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEA 85
Score = 29.0 bits (66), Expect = 2.3
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 164 EIVTKTNNVTEKKKEKEEE--------EEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E+ + + EK KE E EEEE +K++ + E +++ K + ++ + +
Sbjct: 12 ELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEE 71
Query: 216 EEN 218
+
Sbjct: 72 AKA 74
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 35.0 bits (81), Expect = 0.017
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 23 KAQEEKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
A +++ + + QL+HP IV+ ++ + E G L ++LK+ +R
Sbjct: 37 AAGKKEFLREASVMAQLDHPCIVRLIGV-----CKGEPLMLVMELAPLGPLLKYLKK-RR 90
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ L K Q+ ++YL S +H +L + + + KI
Sbjct: 91 EIPVSDL---KELAHQVAMGMAYLESKH--FVHRDLAARNVLLVNRHQAKI 136
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 35.1 bits (81), Expect = 0.018
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 66 EYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
E M + SL +F K+ +P + I+ AL YLHS +IH ++ + I
Sbjct: 80 EVMDT-SLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHS-KLSVIHRDVKPSNVLI 137
Query: 126 QHNGLVKIGCD 136
NG VK+ CD
Sbjct: 138 NRNGQVKL-CD 147
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 35.2 bits (81), Expect = 0.018
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 37 TQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWC 96
+ L+H NIV++ +D+ N + IF+ E + GSL L R+K K +
Sbjct: 60 SYLKHRNIVQY--LGSDSENGFFK-IFM-EQVPGGSLSALL-RSKWGPLKDNEQTIIFYT 114
Query: 97 SQILSALSYLHSCSPPIIHGNLTCDTIFIQ-HNGLVKI 133
QIL L YLH I+H ++ D + + ++G+VKI
Sbjct: 115 KQILEGLKYLHDNQ--IVHRDIKGDNVLVNTYSGVVKI 150
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 34.9 bits (80), Expect = 0.019
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +++HPNIV F + + R+ + EY G L + + R +R V W
Sbjct: 53 LAKMKHPNIVTFF----ASFQENGRLFIVMEYCDGGDLMKRINR-QRGV-LFSEDQILSW 106
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLV-KIG 134
QI L ++H I+H ++ IF+ NG+V K+G
Sbjct: 107 FVQISLGLKHIH--DRKILHRDIKSQNIFLSKNGMVAKLG 144
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 35.4 bits (81), Expect = 0.019
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L + HP+I++ T T+N K + + Y + L +L KRN+ + A +R
Sbjct: 137 LRAINHPSIIQLKG--TFTYN-KFTCLILPRYKTD--LYCYLA-AKRNIAICDILAIER- 189
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
+L A+ YLH IIH ++ + IFI H G V +G
Sbjct: 190 --SVLRAIQYLHENR--IIHRDIKAENIFINHPGDVCLG 224
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 35.2 bits (81), Expect = 0.019
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L ++HP +V H + ++ F+ +Y++ G L L+R + P + +
Sbjct: 50 LKNVKHPFLVGLHY----SFQTADKLYFVLDYVNGGELFFHLQRERS----FPEPRARFY 101
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLV 131
++I SAL YLHS + II+ +L + I + G V
Sbjct: 102 AAEIASALGYLHSLN--IIYRDLKPENILLDSQGHV 135
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 35.0 bits (80), Expect = 0.024
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEE--EKKKEKEKEKKKKKKKI 212
Y+I TEK+ E+EE+ +K + EE E+ KE ++ KKKK KK+
Sbjct: 201 YDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKV 252
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 34.6 bits (79), Expect = 0.025
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
+ +TEYMS GSL FLK + KLP +Q+ + ++Y+ + IH +L
Sbjct: 75 IYIVTEYMSKGSLLDFLKDGEGRALKLP--NLVDMAAQVAAGMAYIERMN--YIHRDLRS 130
Query: 121 DTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
I + + KI IE+ +Y + RQ PI
Sbjct: 131 ANILVGDGLVCKIADFGLARLIEDNEYTA--RQGAKFPI 167
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 34.4 bits (79), Expect = 0.026
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ +L HP +V+ + T KP I +TE+M +G L +L++ + + K L +
Sbjct: 53 MMKLSHPKLVQLYGVCT---QQKPLYI-VTEFMENGCLLNYLRQRQGKLSKDMLLS---M 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKYLSAT 151
C + + YL S IH +L + G+VK+ T + + +Y S++
Sbjct: 106 CQDVCEGMEYLERNS--FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSS 159
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 34.7 bits (80), Expect = 0.026
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L QL+HPN+V + K ++ + EY L + ++N + +P K+
Sbjct: 54 LKQLKHPNLVNLI----EVFRRKRKLHLVFEYCDHTVLNEL----EKNPRGVPEHLIKKI 105
Query: 96 CSQILSALSYLHS--CSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
Q L A+++ H C IH ++ + I I G +K+ CD
Sbjct: 106 IWQTLQAVNFCHKHNC----IHRDVKPENILITKQGQIKL-CD 143
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 33.1 bits (76), Expect = 0.028
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
E E +E EEEEK+++ +EE +
Sbjct: 78 EAAAEADEAEEEEKEEEAEEESD 100
Score = 28.5 bits (64), Expect = 1.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E + + EEEEK++E E+E
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
+ + +E EEE+K+++ EEE
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEES 99
Score = 27.4 bits (61), Expect = 2.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
E E + ++EE+E++ E+E
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 27.4 bits (61), Expect = 3.1
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKE 204
E E + +++E+EE+ +E+ +
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDD 101
Score = 27.4 bits (61), Expect = 3.2
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKE 204
E + + +EEE++++ +E+
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEES 99
Score = 27.0 bits (60), Expect = 3.4
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
+ E EEEE++++ ++E ++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDD 101
Score = 26.6 bits (59), Expect = 5.2
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKE 200
E E ++ +++++EEE ++E
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAEEE 98
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 34.6 bits (79), Expect = 0.028
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 25 QEEKIQQVFENLTQL-EHPNIVKFHRYWTDT----HNDKPRVIFITEYMSSGSLKQFLKR 79
+EE+I+ L + H NI ++ + H+D+ + + E+ +GS+ +K
Sbjct: 55 EEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQ--LWLVMEFCGAGSVTDLVKN 112
Query: 80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
TK N K A+ C +IL L++LH+ +IH ++ + + N VK+
Sbjct: 113 TKGNALKEDWIAY--ICREILRGLAHLHAHK--VIHRDIKGQNVLLTENAEVKL 162
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 34.3 bits (79), Expect = 0.029
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 20/100 (20%)
Query: 42 PNIVKFH-RYWTDTHNDKPRVIFI-TEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQI 99
P IV F+ +++D I I E+M GSL Q LK+ R +P + + +
Sbjct: 59 PYIVGFYGAFYSDGE------ISICMEHMDGGSLDQVLKKAGR----IPENILGKISIAV 108
Query: 100 LSALSYL---HSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
L L+YL H I+H ++ I + G +K+ CD
Sbjct: 109 LRGLTYLREKHK----IMHRDVKPSNILVNSRGEIKL-CD 143
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 34.5 bits (79), Expect = 0.029
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 150 ATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
A Q YGR I Q K +++K+KEE+ EE K K+ E+E+ K+ EKE+ K +
Sbjct: 59 AVVQQYGR-IQSQQSSAKKGE---QQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQ 114
Query: 210 KKIMRKEE 217
++ + EE
Sbjct: 115 EQQKQAEE 122
Score = 33.0 bits (75), Expect = 0.091
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
KKK +E + E+ K K E KK+ E E K +K + E
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Score = 30.7 bits (69), Expect = 0.60
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E+K+++E+ + ++KKK E K K + K K +K+
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKK 172
Score = 28.8 bits (64), Expect = 2.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EKK E EE+ +KKK + K + K ++K
Sbjct: 216 KAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 28.4 bits (63), Expect = 3.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ K E E + + EKK + EE+ EK+K K K
Sbjct: 206 KAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAA 248
Score = 28.0 bits (62), Expect = 4.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K K E +++ ++ K EE K K + KKK +
Sbjct: 161 AKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEA 198
Score = 28.0 bits (62), Expect = 4.4
Identities = 9/37 (24%), Positives = 28/37 (75%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E+ K+ E+E + ++++K+ EE +K+ + ++K+++++
Sbjct: 101 ERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQ 137
Score = 28.0 bits (62), Expect = 4.5
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K + +++ E + K E+ K + + K K +KK + +E+
Sbjct: 186 KAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 27.2 bits (60), Expect = 8.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
Q E K + +K++E++ + ++KKK E + K E K K + +K E
Sbjct: 119 QAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 34.4 bits (80), Expect = 0.032
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 164 EIVTKTNNVT--EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
E+V + N+++ E+++ EE E +++++++EEKK +K K +MR
Sbjct: 53 EVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMR 105
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 34.1 bits (79), Expect = 0.033
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K K + + E++ KK+E +K++ + ++K K K RK+
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 32.2 bits (74), Expect = 0.14
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
V ++ E++ ++ E +K+K ++K K K +KK+K +K E
Sbjct: 110 VQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 30.7 bits (70), Expect = 0.40
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ +++ ++ E +K+K E+K + + +KK+K + + E
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Score = 28.0 bits (63), Expect = 3.6
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K + + E++ +K++ E+E+ + + K K K +K
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 27.2 bits (61), Expect = 5.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K K + + E++ KK++ E++K + + K K K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAP 143
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 33.1 bits (76), Expect = 0.033
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
V E+K K+ +E+ K+KK+K++++KKK+K+ KK KKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 31.6 bits (72), Expect = 0.12
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K+ +E+ ++KK+KKK++++KKK+ K+ KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.46
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
EE++ K+ KE+ ++KK+K+K+KKKKKKK +K
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 29.3 bits (66), Expect = 0.94
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
EE++ K+ K++ ++KK++K+K+KKKKKK +
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 27.0 bits (60), Expect = 5.1
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EE++ K+ +E+ K+K+++K+KKKKKKK K+
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 34.3 bits (78), Expect = 0.034
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
+ +TE+M GSL FLK KLP +QI ++Y+ + IH +L
Sbjct: 75 IYIVTEFMGKGSLLDFLKEGDGKYLKLP--QLVDMAAQIADGMAYIERMN--YIHRDLRA 130
Query: 121 DTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPI 159
I + N + KI IE+ +Y + RQ PI
Sbjct: 131 ANILVGDNLVCKIADFGLARLIEDNEYTA--RQGAKFPI 167
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 33.2 bits (76), Expect = 0.036
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 164 EIVTKTNNVTE-KKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E T + T ++E+EEEEEE +K+++ +E + ++ ++ E
Sbjct: 82 EGPAGTTSGTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.9 bits (78), Expect = 0.039
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+ K EK+ E E+ KKK++ E +KKKE E+ K +KK
Sbjct: 67 DFLSDQKPE--DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 30.1 bits (68), Expect = 0.85
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
K E+E+E + E+ KKKE+ + KKKK+ + ++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 33.8 bits (77), Expect = 0.048
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 20 KNFKAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQF 76
K K +Q E + L+H +V+ + T + ITEYM+ GSL F
Sbjct: 36 KTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEP----IYIITEYMAKGSLLDF 91
Query: 77 LKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
LK + LP + +QI ++Y+ + IH +L + + + + KI
Sbjct: 92 LKSDEGGKVLLPKLI--DFSAQIAEGMAYIERKN--YIHRDLRAANVLVSESLMCKIADF 147
Query: 137 TYTHTIENKKY 147
IE+ +Y
Sbjct: 148 GLARVIEDNEY 158
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 33.5 bits (77), Expect = 0.056
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
EEE E K + +EE KKK+K+K+KK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 32.7 bits (75), Expect = 0.10
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
EEE E K + EEE KK+K+K+KKK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 32.3 bits (74), Expect = 0.14
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EEE + K + EEE+ K+K+K+KKKK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 31.2 bits (71), Expect = 0.36
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
EEE E K + ++E +KKK+K+K+K KK E
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEA 204
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E K + EEE +KKKKKK+++ KK +
Sbjct: 170 ELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVS 207
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 33.8 bits (78), Expect = 0.056
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK--RTKRNVKKLPLSAWK 93
L +L+H N+V + + H DK V + +Y + L Q +K R + V +P S K
Sbjct: 56 LRELKHENVVSLVEVFLE-HADK-SVYLLFDY-AEHDLWQIIKFHRQAKRVS-IPPSMVK 111
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFI----QHNGLVKIG 134
QIL+ + YLHS ++H +L I + G+VKIG
Sbjct: 112 SLLWQILNGVHYLHSNW--VLHRDLKPANILVMGEGPERGVVKIG 154
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 33.4 bits (77), Expect = 0.061
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK---KKKKIMRKEE 217
K + EK +EK EEEEEE+ + +EEEE++ E+EK++K K KI +E
Sbjct: 8 KLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKE 60
Score = 30.7 bits (70), Expect = 0.48
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
V EK +E+EEEE E +++++EE+E++K+++ K K KE+
Sbjct: 16 VEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
Score = 27.2 bits (61), Expect = 7.8
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKK----EKEKEKKKKKKKI 212
+ V K E+++E+E E EE+++++ EEE+K+K +K K + K+K I
Sbjct: 11 KFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDI 63
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 33.4 bits (76), Expect = 0.064
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 32 VFENLTQLEHPNIVKFHRYWTDTHNDK-PRVIFITEYMSSGSLKQFLKRTKRNVKKLPLS 90
V +L EHPN+V+ T + D+ ++ + E++ L +L + +P
Sbjct: 54 VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPE--PGVPTE 110
Query: 91 AWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
K Q+L L +LHS ++H +L I + +G +K+
Sbjct: 111 TIKDMMFQLLRGLDFLHSHR--VVHRDLKPQNILVTSSGQIKLA 152
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 33.5 bits (77), Expect = 0.064
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L QL H N+V + K R+ + E++ L ++ L S +++
Sbjct: 54 LKQLRHENLVNL----IEVFRRKKRLYLVFEFVDHTVLDDL----EKYPNGLDESRVRKY 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
QIL + + HS + IIH ++ + I + +G+VK+ CD
Sbjct: 106 LFQILRGIEFCHSHN--IIHRDIKPENILVSQSGVVKL-CD 143
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.8 bits (77), Expect = 0.068
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K + +++E+ EE +++K EEE +K K+ KK K K ++
Sbjct: 310 AKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDK 353
Score = 31.9 bits (72), Expect = 0.27
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E +++++ EE EE+K +++ KK +K K+ K KK + + +
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
Score = 31.1 bits (70), Expect = 0.51
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++ E+ EE E++K ++E KK K+ +K K KK + K++
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
Score = 30.7 bits (69), Expect = 0.66
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + E E+ + +E EE+K E+E KK KK
Sbjct: 304 LSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 29.5 bits (66), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E +E EEE+ EE+ K+ ++ KK K K+ K
Sbjct: 316 QDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 29.2 bits (65), Expect = 2.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E K E + E ++ + EE ++++ E+E KK
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
Score = 28.0 bits (62), Expect = 4.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+ E+ +EEK KKKK++ K K+K + KK K+
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 33.3 bits (77), Expect = 0.069
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEE 196
E+ + + +EEEEEEE++++++ EE
Sbjct: 287 ELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 32.1 bits (74), Expect = 0.15
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
E+EEEEEEE+++++ EEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPSEEE 320
Score = 30.6 bits (70), Expect = 0.60
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
+ + + E+ KE + + +++EEEE+++E+E+
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+ E + + E++++++EEEE+++ E+E
Sbjct: 288 LKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 26.8 bits (60), Expect = 9.6
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
E+ +E + + EEE+++E+E+E+++
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 33.2 bits (76), Expect = 0.070
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 24 AQEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
A++E + E+ L HP + +Y TH+ R+ F+ EY + G L F ++
Sbjct: 35 AKDEVAHTLTESRVLQNTRHPFLTAL-KYSFQTHD---RLCFVMEYANGGEL--FFHLSR 88
Query: 82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
V + + + ++I+SAL YLHSC +++ +L + + + +G +KI
Sbjct: 89 ERVFSEDRARF--YGAEIVSALGYLHSCD--VVYRDLKLENLMLDKDGHIKI 136
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 33.1 bits (76), Expect = 0.076
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEE-----EKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ +KK+E EE+ E EKK+K KEE +KKK KE + K KK
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKK 274
Score = 33.1 bits (76), Expect = 0.081
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E + EK+ + +EE KKKK +E + K +K K KKI
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 30.8 bits (70), Expect = 0.42
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ +E E E +KK+K +EE KK+K KE K K
Sbjct: 236 ETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 30.8 bits (70), Expect = 0.48
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
KKK++E EE+ E + + E++ K KE+ K+KK K+ K ++
Sbjct: 229 ESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 29.6 bits (67), Expect = 1.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKK-------KEEEEKKKEKEKEKKKKKKKIMRK 215
Y+ + K+ + E K + +E +KKK++ E +KK K KE+ KKKK K
Sbjct: 208 YKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESK 267
Score = 29.2 bits (66), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+ EKK++ +EE KKKK KE + K K+ K KK
Sbjct: 246 SRAEKKRKS---KEEIKKKKPKESKGVKALKKVVAKGMKK 282
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 33.5 bits (77), Expect = 0.079
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K + V E EE E+ ++ ++ E ++E +KE KK KKI +
Sbjct: 456 KQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTY 506
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 32.8 bits (75), Expect = 0.080
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+T + E K+E++E E K+ K + E++ +E E+E +++
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Score = 30.9 bits (70), Expect = 0.42
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++ E EE +EEEK+ E++E K + EKE ++ +++
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Score = 30.9 bits (70), Expect = 0.43
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ ++ ++ E EE +E++K+ E+K+ + + EK+ ++ + +EE
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Score = 30.5 bits (69), Expect = 0.52
Identities = 9/52 (17%), Positives = 29/52 (55%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ T + +E +EEE+E + KE++ +++++E +++ ++ + +
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Score = 29.3 bits (66), Expect = 1.2
Identities = 8/52 (15%), Positives = 28/52 (53%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ +++ + EE +EE+K+ E+++ K +++ ++ ++ +E+
Sbjct: 49 QEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ KK + +E E E+ K++++E ++KE + +K+ +EEN
Sbjct: 36 FPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEEN 95
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
N +K+ + + E+E+E+ +++ EEE+++ E EK+ ++K
Sbjct: 72 AANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 27.8 bits (62), Expect = 3.6
Identities = 10/40 (25%), Positives = 27/40 (67%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
K +E K++K + E+E+++ +++ EEE ++ ++ +K+
Sbjct: 70 KEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 27.4 bits (61), Expect = 4.8
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
K + +K+++E EEE E++ ++ +E +K+ +EK + +K+I
Sbjct: 78 KEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEI 122
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 33.0 bits (76), Expect = 0.083
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 41 HPNIVKFHRYWTDTHNDKP--RVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQ 98
HPNI++ + D+ R+ + E M +L + +K KR LP K + Q
Sbjct: 57 HPNILRLI----EVLFDRKTGRLALVFELMD-MNLYELIKGRKR---PLPEKRVKSYMYQ 108
Query: 99 ILSALSYLHSC 109
+L +L ++H
Sbjct: 109 LLKSLDHMHRN 119
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 33.1 bits (75), Expect = 0.086
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 36 LTQLEHPNIVKFHRYW-TDTHNDKPRVIFITEYMS--SGSLKQFLKRTKRNVKKLPLSAW 92
+ L H NI+ Y+ T+ + IF+ M ++ +++K RN LPL
Sbjct: 113 MKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLV 172
Query: 93 KRWCSQILSALSYLHS 108
K + Q+ AL+Y+HS
Sbjct: 173 KLYSYQLCRALAYIHS 188
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 33.3 bits (76), Expect = 0.089
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 143 ENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
E K +L R+ R I + E KK + E+ E K +KKE +K++ E
Sbjct: 300 EKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEA-KARKKEIAQKRRAAE 358
Query: 203 KEKKKKKK 210
+E ++ +
Sbjct: 359 REINREAR 366
Score = 30.6 bits (69), Expect = 0.56
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E T +K E + ++E +K++ E E +E +E+ + +
Sbjct: 326 HAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARAR 379
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 33.0 bits (75), Expect = 0.090
Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 25 QEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
+++++ VF L + HP V + + D+ + + E++ G FL+R K
Sbjct: 71 KQKQVDHVFSERKILNYINHPFCVNLY----GSFKDESYLYLVLEFVIGGEFFTFLRRNK 126
Query: 82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHT 141
R P + +QI+ YL S + I++ +L + + + +G +K+ +
Sbjct: 127 R----FPNDVGCFYAAQIVLIFEYLQSLN--IVYRDLKPENLLLDKDGFIKMTDFGFAKV 180
Query: 142 IENKKY 147
++ + Y
Sbjct: 181 VDTRTY 186
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 33.1 bits (75), Expect = 0.095
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 22 FKAQEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
K +EEK N L ++HP +V H + ++ F+ +Y++ G L L+R
Sbjct: 34 LKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD----KLYFVLDYINGGELFYHLQR 89
Query: 80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
+ ++ P + + + ++I SAL YLHS + I++ +L + I + G
Sbjct: 90 ERCFLE--PRARF--YAAEIASALGYLHSLN--IVYRDLKPENILLDSQG 133
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 31.3 bits (71), Expect = 0.097
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKE 202
EE+ EEK+++KK+EEEK++E+E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 31.3 bits (71), Expect = 0.11
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKE 202
EE+ EE++++KKKEEE++++E+E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.5 bits (69), Expect = 0.19
Identities = 11/24 (45%), Positives = 22/24 (91%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEE 196
E+K E++EEE++++++K++EEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.2 bits (68), Expect = 0.28
Identities = 11/25 (44%), Positives = 22/25 (88%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKE 204
EE+ E+K+++K++EE+K+E+E+E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.2 bits (68), Expect = 0.32
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEE 196
+++ EE+EEE+KK+++KEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEE 95
Score = 29.4 bits (66), Expect = 0.52
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEK 205
++K +++EEEKKKE+EKE+
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEE 93
Score = 28.6 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKE 204
EEK ++K+EE++K++EKE+E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEE 94
Score = 27.8 bits (62), Expect = 2.0
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKE 200
+E+ EE+E++KKK+EE+E+++E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 32.0 bits (73), Expect = 0.099
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
T N T + E+E+ E ++ K ++EE +K +++ KK KK +
Sbjct: 83 TVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 28.1 bits (63), Expect = 2.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
VT + V ++EK E +E K ++EE K +++ K+ KK +
Sbjct: 82 VTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Score = 26.6 bits (59), Expect = 6.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
VT + EEE+ + +K+ + +++E K +K+ KK
Sbjct: 81 RVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKS 121
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 32.9 bits (75), Expect = 0.100
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L L H NI+ + D + F+TE + + L + L + L + +
Sbjct: 63 LKHLRHENIISLSDIFISPLED---IYFVTELLGT-DLHRLLT-----SRPLEKQFIQYF 113
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
QIL L Y+HS ++H +L I I N +KI CD
Sbjct: 114 LYQILRGLKYVHSAG--VVHRDLKPSNILINENCDLKI-CD 151
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.2 bits (76), Expect = 0.10
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 121 DTIFIQHNGLVKIGCDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKE 180
D I + H G++K TY N + G K E+ E+E
Sbjct: 807 DRIILVHEGMIKEE-GTYEELSNNGPLFQKLMENAG-----------KMEEYVEENGEEE 854
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK--IMRKEE 217
+++ K KK+ +KK K+ K ++++EE
Sbjct: 855 DDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEE 893
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 33.1 bits (76), Expect = 0.10
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EK+ EK +E+ + K K E +KK+ + ++KKK+K + E
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSER 390
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 32.5 bits (74), Expect = 0.11
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 26 EEKIQQVFENLTQLEHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
+++I E L + + P I+ F+ ++ + R+ TE+M GSL +
Sbjct: 43 QKQIMSELEILYKCDSPYIIGFYGAFFVEN-----RISICTEFMDGGSLDVY-------- 89
Query: 85 KKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
+K+P R ++ L+YL S I+H ++ + + G VK+ CD
Sbjct: 90 RKIPEHVLGRIAVAVVKGLTYLWSLK--ILHRDVKPSNMLVNTRGQVKL-CD 138
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 32.7 bits (74), Expect = 0.12
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L ++HP +V H + T ++ F+ ++++ G L L+R + P + +
Sbjct: 50 LKNVKHPFLVGLHYSFQTTE----KLYFVLDFVNGGELFFHLQRER----SFPEPRARFY 101
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLV 131
++I SAL YLHS + I++ +L + I + G V
Sbjct: 102 AAEIASALGYLHSIN--IVYRDLKPENILLDSQGHV 135
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 32.9 bits (76), Expect = 0.13
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ EEE K++ E K+ +EKEKK +K +I
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 31.7 bits (73), Expect = 0.25
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ + EEE K++ + ++ +EKEK+ +K + I
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITI 545
Score = 30.5 bits (70), Expect = 0.62
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
V K + + +EE +++ + +E +++++K +K
Sbjct: 500 VAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.8 bits (63), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+++ +E+ E K+ EE++KK ++ E
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 32.3 bits (73), Expect = 0.13
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK--KLPLSAWK 93
L +L+HPN++ + + + K ++F + +F + +K N K +LP S K
Sbjct: 52 LRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVK 111
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
QIL + YLH+ ++H +L I + G
Sbjct: 112 SLLYQILDGIHYLHANW--VLHRDLKPANILVMGEG 145
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.4 bits (74), Expect = 0.13
Identities = 12/38 (31%), Positives = 30/38 (78%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K+ +E E KK K++++++++E+ K++KK++++ RK+
Sbjct: 181 KKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQ 218
Score = 28.9 bits (65), Expect = 1.8
Identities = 8/41 (19%), Positives = 31/41 (75%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
+ ++ + K+ +++++K+++++ ++ KK+++E+E+K+K
Sbjct: 179 EAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 28.9 bits (65), Expect = 1.8
Identities = 9/43 (20%), Positives = 29/43 (67%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+ + +++ +K ++K+++E++KE+E+ + +++ + EE
Sbjct: 94 SAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEE 136
Score = 28.5 bits (64), Expect = 2.1
Identities = 8/32 (25%), Positives = 28/32 (87%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
E ++ +++++K++++ +++KK++E+E++K+K
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/47 (23%), Positives = 31/47 (65%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K E+ +EE KK+ ++ E +K K+++++++++++K +K++
Sbjct: 165 LSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQ 211
Score = 27.8 bits (62), Expect = 4.3
Identities = 12/33 (36%), Positives = 26/33 (78%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK 203
+++++K EEE +++KK++EEEE+K++ E+
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 27.4 bits (61), Expect = 5.1
Identities = 6/36 (16%), Positives = 29/36 (80%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+K ++++++++++++++ +K++E+E+ K+K ++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAW 224
Score = 26.6 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 27/33 (81%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
++++++EEE +++KK+++EEE K+K +E +K
Sbjct: 194 QQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 26.6 bits (59), Expect = 9.9
Identities = 8/41 (19%), Positives = 34/41 (82%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
KK ++++++ EE+++K+++++++++E++++ ++ +K M+
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKN 230
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 32.3 bits (73), Expect = 0.14
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +HPNIVK D + + + E+ + G++ + +R L +
Sbjct: 56 LASCDHPNIVKL----LDAFYYENNLWILIEFCAGGAVDAVMLELER---PLTEPQIRVV 108
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
C Q L AL+YLH IIH +L I +G +K+
Sbjct: 109 CKQTLEALNYLHENK--IIHRDLKAGNILFTLDGDIKLA 145
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 32.3 bits (73), Expect = 0.14
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 18 ERKNFKAQEEKIQQVFENLTQLEHPNIVKF--HRYWTDTHNDKPRVIFITEYMSSGSLKQ 75
E K+ + E+ + ++ E L HP IVK YW ++ + E+ G++
Sbjct: 46 ETKSEEELEDYMVEI-EILATCNHPYIVKLLGAFYWDG------KLWIMIEFCPGGAVDA 98
Query: 76 FLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ R + + + + C Q+L AL YLHS IIH +L + + +G +K+
Sbjct: 99 IMLELDRGLTEPQI---QVICRQMLEALQYLHSMK--IIHRDLKAGNVLLTLDGDIKL 151
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 31.7 bits (72), Expect = 0.14
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+++KE +E EE++ K K+E+++KKEK+ +K KKK
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 31.7 bits (72), Expect = 0.16
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EE E+E+K+ KE EEK+ K K++KK+KK+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKE 123
Score = 31.7 bits (72), Expect = 0.16
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
EE EK++K+ +E ++KE K KK+KK+K +K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.17
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+E E+E+++ K+ EE+E K K+++K+KK+KK+ K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 30.9 bits (70), Expect = 0.24
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
N+ ++ EKE++E ++ ++K+ + KK++KEK++KK +K+ +K+
Sbjct: 89 NLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 30.5 bits (69), Expect = 0.33
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E+K+ +E EE+E K KKE++EKK++K EK KKK
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 30.5 bits (69), Expect = 0.34
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ EK+ K ++E++EKK+KK E+ KK+ K K KK +K
Sbjct: 101 EVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Score = 29.3 bits (66), Expect = 0.92
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+K+ KE EE+E K KK+++E+K+K+ ++ KKK K
Sbjct: 98 EQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 32.4 bits (74), Expect = 0.15
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ NV E E++ + ++K+KK+EE K KE+++E + +K+
Sbjct: 336 SPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRF 379
Score = 29.7 bits (67), Expect = 1.1
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK--EKKKKKKKIM 213
N +EK + ++K+KKKEE + K+EK++ E +K+ K++M
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELM 383
Score = 29.0 bits (65), Expect = 2.0
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 150 ATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
ATR + E +NV +K+K+KEE + +E+K++ E E++ KE +E K+K
Sbjct: 331 ATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 32.7 bits (75), Expect = 0.15
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 161 GQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+V T++ TE K++ + K K +KK + E + KK +K
Sbjct: 58 FLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 28.0 bits (63), Expect = 3.9
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++ + +++++E+++ E+EEKK+ KE EK + E+
Sbjct: 146 DIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 28.0 bits (63), Expect = 4.4
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKK--KKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
T + + +EE +++ KK K K + KE+ KE + KKK + +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 27.3 bits (61), Expect = 7.7
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K + +KK K + + KK EK+ K
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 32.0 bits (73), Expect = 0.16
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+K K++EE +++K+ KK +K + KKK
Sbjct: 157 AERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKK 195
Score = 30.8 bits (70), Expect = 0.35
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K+KEE EE+K+ +K +K + KKKK
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
+++ EE +E KK +K E KKKK
Sbjct: 165 KEEFAAEERKEALAAAAKKSATPQKVE---TKKKK 196
Score = 26.6 bits (59), Expect = 8.4
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 183 EEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E ++ K+K++ E++KE KK + E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETK 193
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 32.0 bits (73), Expect = 0.16
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 41 HPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNV 84
H NIV+ + PR I + E M+ G LK FL+ +
Sbjct: 68 HQNIVRLIGVSFERL---PRFILL-ELMAGGDLKSFLRENRPRP 107
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 32.5 bits (74), Expect = 0.17
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 38 QLEHPNIVKFHRYWTDTHNDKPRVIF-ITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWC 96
+L HPNIV D+ P ++F + EY+ +L++ L LP R
Sbjct: 34 RLYHPNIVAL----LDSGEAPPGLLFAVFEYVPGRTLREVLA----ADGALPAGETGRLM 85
Query: 97 SQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGL 130
Q+L AL+ H+ I+H +L I + G+
Sbjct: 86 LQVLDALACAHNQG--IVHRDLKPQNIMVSQTGV 117
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 32.4 bits (73), Expect = 0.17
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 36 LTQLEHPNIVKFH---RYWTDTHNDKPRVIF-ITEYMSSGSL----KQFLKRTKRNVKKL 87
L +L H NI+K R +T+ + F + +M + + LK+T+ +K
Sbjct: 217 LGRLNHENILKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMK-- 274
Query: 88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKK 146
Q+L A+ Y+H +IH ++ + IF+ +G + +G E ++
Sbjct: 275 ----------QLLCAVEYIH--DKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKER 321
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 32.0 bits (73), Expect = 0.17
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K +KEEE +++ K +++ K + ++ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 31.1 bits (71), Expect = 0.18
Identities = 10/40 (25%), Positives = 27/40 (67%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+ + E+ + + +EE+K +++ + + ++ KE+E++KKK
Sbjct: 87 DEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.6 bits (67), Expect = 0.59
Identities = 13/38 (34%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+++ E + +EEKK + EE +++ E+ KE++++KKK
Sbjct: 90 DERAEAQRARDEEKKLDE-EEAKRQHEEAKEREREKKK 126
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 30.3 bits (69), Expect = 0.18
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 177 KEKEEEEEEEKKKKKKEEEE 196
EEEKK++++EEEE
Sbjct: 60 AAAAAAAEEEKKEEEEEEEE 79
Score = 29.1 bits (66), Expect = 0.44
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 176 KKEKEEEEEEEKKKKKKEEEE 196
EEE+K+++++EEE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEED 80
Score = 29.1 bits (66), Expect = 0.51
Identities = 10/13 (76%), Positives = 13/13 (100%)
Query: 174 EKKKEKEEEEEEE 186
E+KKE+EEEEEE+
Sbjct: 68 EEKKEEEEEEEED 80
Score = 28.0 bits (63), Expect = 1.1
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEE 196
EEE++++++++EE++
Sbjct: 58 AAAAAAAAAEEEKKEEEEEEEEDD 81
Score = 28.0 bits (63), Expect = 1.1
Identities = 5/20 (25%), Positives = 14/20 (70%)
Query: 183 EEEEKKKKKKEEEEKKKEKE 202
+++K+EEE+++E++
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 27.2 bits (61), Expect = 2.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 182 EEEEEKKKKKKEEEEKKKEKE 202
+++KKEEEE+++E +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 26.0 bits (58), Expect = 6.6
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 184 EEEKKKKKKEEEEKKKEKEKE 204
+++++EE+++E+E +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 25.7 bits (57), Expect = 7.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 181 EEEEEEKKKKKKEEEEKKKE 200
+++KK+EEEE++++
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 31.7 bits (73), Expect = 0.19
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KKE E +EE K + E E + KE+ E ++++K++++KEE
Sbjct: 49 ALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEET 93
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.7 bits (72), Expect = 0.19
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K V KK + + ++ KK + E++ + + + +KK
Sbjct: 110 KEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 26.7 bits (59), Expect = 7.2
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+K+ K ++++ K KK ++ E EK+ + + + + +++
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKK 151
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine
Kinase, REarranged during Transfection protein.
Protein Tyrosine Kinase (PTK) family; RET (REarranged
during Transfection) protein; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial
medullary thyroid carcinoma (FMTC).
Length = 290
Score = 31.9 bits (72), Expect = 0.19
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 33 FENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
F L Q+ HP+++K + + D P ++ I EY GSL+ FL+ +++
Sbjct: 54 FNLLKQVNHPHVIKLYGACS---QDGP-LLLIVEYAKYGSLRSFLRESRK 99
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 31.6 bits (72), Expect = 0.20
Identities = 18/44 (40%), Positives = 38/44 (86%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E++K+ EE+ E E+K++++ EEE++K+KE+E++K++++ RKE+
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Score = 31.6 bits (72), Expect = 0.22
Identities = 16/45 (35%), Positives = 36/45 (80%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E+KK +E+ E E K++++ EEE +KK++E+E+K+++++ +++E
Sbjct: 30 ERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 30.4 bits (69), Expect = 0.46
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ E K E ++++EEE EEE++KKK+EEE K++E++ K++++ + ++
Sbjct: 27 EREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/66 (25%), Positives = 42/66 (63%)
Query: 145 KKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+ L + + + + E + +++ E++EEEE E++++KK+EEE++KE+E++
Sbjct: 8 RAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67
Query: 205 KKKKKK 210
+K+++
Sbjct: 68 ARKEQE 73
Score = 27.4 bits (61), Expect = 4.9
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK--IMRKEE 217
EEE EE KK ++K E E+K+E+E E++++KKK RKE
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 32.4 bits (73), Expect = 0.20
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKK--------------KKKKEEEEKKKEKEKEKKK 207
+ K N ++ KK K +EEEEEKK KK K KK+E+ + KK
Sbjct: 517 ETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKK 576
Query: 208 KKKKIMRKEE 217
KKK+I ++++
Sbjct: 577 KKKQIAKQKK 586
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 31.9 bits (72), Expect = 0.20
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 24 AQEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
A++E V E+ L HP + +Y TH+ R+ F+ EY + G L L R +
Sbjct: 35 AKDEVAHTVTESRVLQNTRHPFLTAL-KYAFQTHD---RLCFVMEYANGGELFFHLSRER 90
Query: 82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
++ + + ++I+SAL YLHS +++ ++ + + + +G +KI
Sbjct: 91 VFTEERA----RFYGAEIVSALEYLHSRD--VVYRDIKLENLMLDKDGHIKI 136
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 31.9 bits (72), Expect = 0.21
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 24 AQEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTK 81
A++E + EN L HP + +Y TH+ R+ F+ EY + G L L R +
Sbjct: 35 AKDEVAHTLTENRVLQNSRHPFLTAL-KYSFQTHD---RLCFVMEYANGGELFFHLSRER 90
Query: 82 RNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ + + ++I+SAL YLHS +++ +L + + + +G +KI
Sbjct: 91 VFSEDRA----RFYGAEIVSALDYLHS-EKNVVYRDLKLENLMLDKDGHIKI 137
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 31.8 bits (72), Expect = 0.21
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 25 QEEKIQQVFENLT-------QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFL 77
Q+ +Q F+ +T L+H IV+ + +T+ GSL +
Sbjct: 45 QDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-----ASLQLVTQLSPLGSLLDHV 99
Query: 78 KRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
++ + ++ L WC QI + YL ++H NL I ++ + +V+I
Sbjct: 100 RQHRDSLDPQRL---LNWCVQIAKGMYYLEEHR--MVHRNLAARNILLKSDSIVQI 150
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 31.9 bits (72), Expect = 0.23
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 24 AQEEKIQQVFENLTQLEHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
A +I + + L + P IV F+ +++D + E+M GSL Q LK KR
Sbjct: 45 AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE-----ISICMEHMDGGSLDQVLKEAKR 99
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
+P + +L L+YL I+H ++ I + G +K+ CD
Sbjct: 100 ----IPEEILGKVSIAVLRGLAYLRE-KHQIMHRDVKPSNILVNSRGEIKL-CD 147
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 31.4 bits (72), Expect = 0.24
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 27 EKIQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKK 86
E IQQ + L+Q P I K+ Y + K +I EY GS LK K +
Sbjct: 44 EDIQQEIQFLSQCRSPYITKY--YGSFLKGSKLWIIM--EYCGGGSCLDLLKPGKLDETY 99
Query: 87 LPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVK 132
+ ++L L YLH IH ++ I + G VK
Sbjct: 100 IAFI-----LREVLLGLEYLH--EEGKIHRDIKAANILLSEEGDVK 138
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.0 bits (73), Expect = 0.24
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
N K E + + E+K KKK+++EKKKE E+ K+++K +I
Sbjct: 727 NWNGKDAEFKISDSVEEKTKKKKKKEKKKE-EEYKREEKARI 767
Score = 28.5 bits (64), Expect = 3.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
EK E++ E + KK+K K++ + E E + K+
Sbjct: 1554 EKNIEEDYAESDIKKRKNKKQYKSNTEAELDFFLKR 1589
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 31.3 bits (71), Expect = 0.25
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 161 GQYEIVTKTNNVTEK-KKEKEEEEEEEKKKKKKE-EEEKKKEKEKEKKKKKKKIMRKEE 217
G EI K N+ + +K K + + ++ KK +EKK+EK+K KKKK + +
Sbjct: 28 GNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQVNPAQ 86
Score = 27.8 bits (62), Expect = 4.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E E+ + K K E K ++K +K K++ K
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIK 51
Score = 26.7 bits (59), Expect = 9.7
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 160 SGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ + + + N + + E+ + K + E +K +EK+++KKK K
Sbjct: 23 ANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPK 74
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.7 bits (73), Expect = 0.26
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
K KE E+ +EE ++KK+K +EE+ K E+ +K+ ++ I
Sbjct: 534 QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAI 579
Score = 31.7 bits (73), Expect = 0.29
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
++K +E E ++ +K KEE E+KKEK +E++ K + KE
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 29.4 bits (67), Expect = 1.4
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K+ EK +EE EEKK+K +EEE+K E+ +++ ++ K +KE
Sbjct: 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585
Score = 29.4 bits (67), Expect = 1.8
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 168 KTNNVTEK--KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K N + + E+E E++ E+ + +E EK KE+ +EKK+K ++ K
Sbjct: 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567
Score = 29.0 bits (66), Expect = 2.4
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+K E+ E +E +K K+E EEKK++ ++E+ K ++
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570
Score = 27.9 bits (63), Expect = 4.5
Identities = 14/48 (29%), Positives = 32/48 (66%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+ + E+ +EK+E+ +EE+ K +E E++ ++ KE KK+ +I+++
Sbjct: 545 EAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
Score = 27.5 bits (62), Expect = 5.9
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ E E +K+ + EKK++K+K++K+K++++
Sbjct: 599 GGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 31.7 bits (73), Expect = 0.27
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
N+ + E E EK +K K+E K+ ++
Sbjct: 40 NIGIDIDKIAEIELLEKGEKPKQEPPPKEIEKDPGLPN 77
Score = 31.4 bits (72), Expect = 0.37
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
+K E E +K +K ++E KE EK+ I+
Sbjct: 44 DIDKIAEIELLEKGEKPKQEPPPKEIEKDPGLPNVSIL 81
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 31.5 bits (71), Expect = 0.27
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 38 QLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCS 97
Q H NI++ T KP +I ITEYM +G+L ++L+ L R +
Sbjct: 62 QFSHHNIIRLEGVVTKF---KPAMI-ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIA 117
Query: 98 ---QILSALSYLH---SCSPPIIHGNLTC 120
+ LS ++Y+H + +++ NL C
Sbjct: 118 AGMKYLSDMNYVHRDLAARNILVNSNLEC 146
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 30.8 bits (70), Expect = 0.29
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
ISGQ+ + E + + +EE+EEE+ ++ ++E++ +E+E KK K
Sbjct: 101 ISGQHLV-----ASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 31.5 bits (71), Expect = 0.30
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 23 KAQEEKIQQVFEN---LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
K EK Q + + L QL+HPN +++ + H + EY GS L+
Sbjct: 59 KQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHT----AWLVMEY-CLGSASDLLEV 113
Query: 80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
K+ ++++ ++A L L+YLHS + +IH ++ I + G VK+
Sbjct: 114 HKKPLQEVEIAAITHGA---LQGLAYLHSHN--MIHRDIKAGNILLTEPGQVKLA 163
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain
an ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both
are anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 31.4 bits (71), Expect = 0.30
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR 79
L Q +H NIV+ T + ++ +TEYMS+G+L FL++
Sbjct: 60 LGQFDHSNIVRLEGVITRGNT----MMIVTEYMSNGALDSFLRK 99
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 31.6 bits (72), Expect = 0.31
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 9 VVWNEVQFSERKNFKAQEEKIQQVFENLTQ-------------LEHPNIVKFHRYWTDTH 55
VVW+ R + +K+ VF+NL +H N++ H
Sbjct: 15 VVWSVT--DPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPH 72
Query: 56 NDKPRVIF-ITEYMSSGSLKQFLKRTKRNVKKLPLSA--WKRWCSQILSALSYLHSCSPP 112
D I+ +TE M S K V PLS+ K + QIL L YLHS
Sbjct: 73 IDPFEEIYVVTELMQSDLHKII-------VSPQPLSSDHVKVFLYQILRGLKYLHSAG-- 123
Query: 113 IIHGNLTCDTIFIQHNGLVKIGCD 136
I+H ++ + + N ++KI CD
Sbjct: 124 ILHRDIKPGNLLVNSNCVLKI-CD 146
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 30.6 bits (70), Expect = 0.31
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 163 YEIVTKT------NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
Y I T T V + + ++++KKKKK+ E ++K+K+ +++K+ +
Sbjct: 58 YVIATSTKVDISGVKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 30.2 bits (69), Expect = 0.40
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE------KKKKKKKIMRK 215
+KKK+K+E E E+KKKK E++KE +K KK +++
Sbjct: 86 KKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKG 133
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 31.2 bits (71), Expect = 0.31
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEK 201
KKE+ EE+E E+++K EEE+ ++E+
Sbjct: 155 KKERAEEKEREEEEKAAEEEKAREEE 180
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
EK K++ EE+E ++++K EEEK +E+E
Sbjct: 152 EKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 28.5 bits (64), Expect = 2.3
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 6/43 (13%)
Query: 178 EKEEEE---EEEKKKKKKEEEEKKKEKEK---EKKKKKKKIMR 214
E E E EK KK++ EE++++E+EK E+K ++++I+
Sbjct: 141 EDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEILT 183
Score = 27.0 bits (60), Expect = 7.8
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E +K K+E EE++++++++ E++K +E+E
Sbjct: 150 ELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 31.6 bits (71), Expect = 0.31
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 58 KPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGN 117
K R+ F+ EY++ G L L R + + + ++I+SAL YLHS I++ +
Sbjct: 67 KDRLCFVMEYVNGGELFFHLSRER----VFSEDRTRFYGAEIVSALDYLHSGK--IVYRD 120
Query: 118 LTCDTIFIQHNGLVKI 133
L + + + +G +KI
Sbjct: 121 LKLENLMLDKDGHIKI 136
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 31.3 bits (71), Expect = 0.32
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWC--SQILSALSYLHSCSPPIIHGNL 118
++ ITEY G L FL+R + + L+ Q+ +++L S + IH +L
Sbjct: 114 ILVITEYCCYGDLLNFLRRKRESF----LTLEDLLSFSYQVAKGMAFLASKN--CIHRDL 167
Query: 119 TCDTIFIQHNGLVKIGCD 136
+ + H +VKI CD
Sbjct: 168 AARNVLLTHGKIVKI-CD 184
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 31.6 bits (71), Expect = 0.32
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E EE+E +++KEEEE K+ K KKK++K M K
Sbjct: 769 ESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKS 805
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 31.2 bits (71), Expect = 0.32
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 36 LTQLEHPNIVKF----HRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSA 91
L L+H N+V T + K + E+ L L K LS
Sbjct: 65 LQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKN---VKFTLSE 120
Query: 92 WKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
K+ +L+ L Y+H I+H ++ I I +G++K+
Sbjct: 121 IKKVMKMLLNGLYYIHRNK--ILHRDMKAANILITKDGILKL 160
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 30.7 bits (70), Expect = 0.33
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
+ K + K+E+E+ EK +K+ E EK + K K
Sbjct: 32 DRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 0.33
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKE---KEKEKKKKKKKIMRKEE 217
E KK +E+E++ + KK+ EE KK E K++ ++KKK + ++K E
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
Score = 31.6 bits (71), Expect = 0.35
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ K+K EE ++ + K E E E E ++K + +KEE
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
Score = 30.9 bits (69), Expect = 0.59
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++ +K EE++++ ++ KK EE++KK E KK+ ++
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Score = 30.9 bits (69), Expect = 0.68
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K EKKK +E ++ EE+ K K EE KK E++K+K ++ KK
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Score = 30.5 bits (68), Expect = 0.75
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K + + +E E ++K E EKKKE+ K+K KK
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Score = 30.5 bits (68), Expect = 0.79
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E KK+ EE ++ ++ KKK EE +KK + K+K ++ KK
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 29.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E KK+ EE ++ ++ KKK EE +KK ++ K+ + KKK
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 29.7 bits (66), Expect = 1.3
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ K+KE EE+++ ++ KK EEE K + +E KK ++ + EE
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
Score = 29.7 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E KK E + E + + E ++K + EKKK++ K
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 29.7 bits (66), Expect = 1.5
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
KK+ EE ++ + K + E + + E+K + + ++E
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Score = 29.3 bits (65), Expect = 1.7
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KK+ EE+++ ++ KKK EE++KK ++ K+ KKK
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 29.3 bits (65), Expect = 2.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KK + + E E + E E+K E ++KK++ KK
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 29.3 bits (65), Expect = 2.1
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E+KK+ EE ++ E++ K K EE KK+ +E +KK ++ K +E+
Sbjct: 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Score = 29.3 bits (65), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 174 EKKKEKEEEEEEEKKK--KKKEEEEKKKEKEKEKKKKKKK 211
+ E E EEK + +KK+EE KKK +KK ++KK
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 29.0 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E KK+ EE++++ + KK +KK ++ K+K ++KKK
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 29.0 bits (64), Expect = 2.8
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKK----KKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E K +K E ++E EE KK KKKE EEKKK +E +K +++ KI +E
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Score = 28.6 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ K+ E + E + E E +++ E +KKK++ + +
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Score = 28.2 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ K+K EE+++ + KKK EE+KKK E +K KK
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Score = 28.2 bits (62), Expect = 4.0
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
KK E+E + + E+ KK+ EE++KK E+ K+ +++KKKI
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Score = 28.2 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+KK+ +E +++ ++ KKK +E KK K+K + KK
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
Score = 28.2 bits (62), Expect = 4.5
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E KK+ +E ++ + KKK +E +K +E +K + KK + +K +
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Score = 28.2 bits (62), Expect = 4.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K + + E +E E ++K + E+KK+E +K+ KKK
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 28.2 bits (62), Expect = 4.8
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E+K E E+++EE KKK ++K +EK+K + KKK
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 28.2 bits (62), Expect = 5.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++ K+K EE +++ KK+ EE KK E K + +
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Score = 27.8 bits (61), Expect = 5.2
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+ K+K +E ++ KKK +E KKK +EK+K + KK
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
Score = 27.8 bits (61), Expect = 6.3
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++ K+K EE+++ + KKK EE KK ++ K+K ++ KK
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.8 bits (61), Expect = 6.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKK----KKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E + K + K E+ ++E EE KKK KK+EEEKKK +K+++KK ++E
Sbjct: 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
Score = 27.8 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++ K+K EE ++ + KKK EE KK E+ K+K ++ KK
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 27.4 bits (60), Expect = 6.7
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++ K+K EE +++ + KK E KKK E +K ++ KK
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 27.4 bits (60), Expect = 7.0
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K + K+ + +E EE K +E ++ + K +E +K ++ + E+
Sbjct: 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAED 1126
Score = 27.4 bits (60), Expect = 8.2
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKK-----EKEKEKKKKKKKIMRKEE 217
+K EE + + ++ KK EEEKKK +KE E+KKK +++ + EE
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Score = 27.4 bits (60), Expect = 8.9
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKK----EKEKEKKKKKKKIMRKEE 217
E KK++ EE+++ ++ KK EEE K K +KE E+ KKK + +K+E
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
Score = 27.0 bits (59), Expect = 9.3
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKK----KEKEKEKKKKKKKIMRKEE 217
E+ K+K EE ++ + KKK EE KK K+K +E KKK + + E
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Score = 27.0 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKE--KEKEKKKKKKKIMRKEE 217
KKK +E +++ + KKK EE +K E K + + + +E+
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 31.5 bits (72), Expect = 0.34
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
EK +E+ EE E EK+K ++E+EE++KE E+ K+
Sbjct: 3 FFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQ 39
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 31.3 bits (71), Expect = 0.34
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 34/130 (26%)
Query: 26 EEKIQQVFEN----LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKR-- 79
E K+QQ F ++ L+HPNIV T ++P + EY++ G L +FL R
Sbjct: 48 EPKVQQEFRQEAELMSDLQHPNIVCLLGVCT---KEQP-TCMLFEYLAHGDLHEFLVRNS 103
Query: 80 ---------TKRNVKKLPLSAWKRWCS-------QILSALSYLHSCSPPIIHGNLTCDTI 123
VK L CS QI + + YL S +H +L
Sbjct: 104 PHSDVGAESGDETVKS-SL-----DCSDFLHIAIQIAAGMEYLSSHH--FVHRDLAARNC 155
Query: 124 FIQHNGLVKI 133
+ VKI
Sbjct: 156 LVGEGLTVKI 165
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.4 bits (71), Expect = 0.35
Identities = 13/51 (25%), Positives = 35/51 (68%), Gaps = 5/51 (9%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK-----EKKKKKKKIMRKEE 217
+ EK++E E+ +EE +++++ EE++++E+EK ++ + K ++ ++ E
Sbjct: 251 LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 30.6 bits (69), Expect = 0.73
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+K ++E EE + K E+ + K + KEK K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
Score = 27.1 bits (60), Expect = 8.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
+ ++E+ EE + K +K K + KEK K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 31.1 bits (70), Expect = 0.36
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP------- 88
L++L+ PNI++ D + P + ITEYM +G L QFL + K+
Sbjct: 73 LSRLKDPNIIRLLGVCVD---EDP-LCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPP 128
Query: 89 --------LSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
S+ QI S + YL S + +H +L + N +KI
Sbjct: 129 AHCLPAISYSSLLHVALQIASGMKYLSSLN--FVHRDLATRNCLVGENLTIKI 179
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 31.2 bits (71), Expect = 0.36
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++EEE+++ ++ E ++ E+ + K+K K +K E
Sbjct: 122 QKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAE 157
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 31.2 bits (71), Expect = 0.37
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L +L+H NIV+ + H+DK ++ + EY LK++ + K +
Sbjct: 53 LKELKHKNIVRLYDV---LHSDK-KLTLVFEYCDQ-DLKKYFDSCN---GDIDPEIVKSF 104
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
Q+L L++ HS + ++H +L + I NG +K+
Sbjct: 105 MFQLLKGLAFCHSHN--VLHRDLKPQNLLINKNGELKL 140
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 31.2 bits (71), Expect = 0.37
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
TK N KK +++ + + +E E K+ +K+KKKKKKK
Sbjct: 22 TKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
Score = 29.3 bits (66), Expect = 1.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E E + K+++++ K+K +K+ KK KK +
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDV 33
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 31.2 bits (71), Expect = 0.37
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKE------KEKEKKKKKKKIM 213
N + K KE+E+EE KK K +E+ K +KE++ K K I+
Sbjct: 193 ENFLKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGII 242
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.9 bits (68), Expect = 0.38
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K ++K+EE++ E +K K E+K E E EK +K+ + + E
Sbjct: 22 AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
Score = 29.1 bits (66), Expect = 0.74
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+KK++E++ E EK K EE+ + E EK +K+ ++
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEEL 61
Score = 27.6 bits (62), Expect = 2.4
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
V + +++ + E+++++KK E E+ K +EK + + + + KE
Sbjct: 13 VDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 27.6 bits (62), Expect = 3.1
Identities = 8/49 (16%), Positives = 26/49 (53%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ +K + ++ + ++K + E E+ +KE E+ + + ++ ++ E
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Score = 26.5 bits (59), Expect = 7.3
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E K +E+ + +KK+++++ E +K + ++K + + K E
Sbjct: 12 EVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLE 55
Score = 26.1 bits (58), Expect = 9.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K EE+ E E +K +KE EE + E + + K + K M E+
Sbjct: 39 AKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
Score = 26.1 bits (58), Expect = 9.5
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+E+ + EKK+++K+ E +K K ++K + ++ + E+
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 31.0 bits (71), Expect = 0.38
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 164 EIVTKTNNVTE-KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ + K +T+ KK + EE+K+ E KKE E + ++
Sbjct: 33 KYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLW 88
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.6 bits (72), Expect = 0.39
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+++E EE+E K+++ + + K K + K K KKK +K+++
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 27.7 bits (62), Expect = 5.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEE---EKKKEKEKEKKKKKKKIMRKEEN 218
E+ +EKE +E+ K K K + K K K+KEKKKKK + ++
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKA 1192
Score = 27.3 bits (61), Expect = 7.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
Q E+ K ++ K K + + + +K K +++EKKK+K K KK
Sbjct: 1144 QEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.1 bits (71), Expect = 0.39
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+E EEE EE +++ KE E +K+ E EKK +KK
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKA 99
Score = 29.2 bits (66), Expect = 1.5
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+E EE EEE K+ + E+E + EK+ +KK KK I + ++
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKD 108
Score = 28.8 bits (65), Expect = 2.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+E EE E++ K+ E E++ E EK+ +KK K
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAK 100
Score = 27.2 bits (61), Expect = 6.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
EEE E+ +++ +E E +KE + +KK +K +K
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKA 102
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 29.5 bits (67), Expect = 0.39
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 187 KKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
K++K++E+ ++++E ++ K K+++I K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEK 29
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+E +EEEK ++++E + K K +E ++K +KI
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKI 33
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 30.5 bits (69), Expect = 0.40
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 148 LSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEE-EEEKKKKKKEEEEKKKEKEKEKK 206
LS TY ++ + + K E EE ++ + K KKE++E +K+ ++ +K
Sbjct: 77 LSPETPTYNEMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEK 136
Query: 207 KKKKKI 212
++KKKI
Sbjct: 137 EEKKKI 142
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.2 bits (71), Expect = 0.41
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ K+ K+ E K + + K E++ EK + K +KE+
Sbjct: 292 QLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKK 336
Score = 30.4 bits (69), Expect = 0.63
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+++ K++ + + E + +K E +EKKKEK+KE+KKKK+
Sbjct: 306 ISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 31.5 bits (72), Expect = 0.41
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
E++ K + E+ KE E+E E KKK E K ++
Sbjct: 729 ELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEE 771
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 30.9 bits (70), Expect = 0.42
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 135 CDTYTHTIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEE 194
+ K L+ ++ + + E +KK KE E E+ ++ +K+E
Sbjct: 117 YSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Query: 195 EEKKKEKEKE 204
EE+++E+E++
Sbjct: 177 EEEEEEEEED 186
Score = 30.9 bits (70), Expect = 0.43
Identities = 14/41 (34%), Positives = 30/41 (73%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+I K + + +K KE E E+ +E+ +K +EEEE+++E++++
Sbjct: 148 DIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDED 188
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 31.0 bits (70), Expect = 0.44
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E E +K + + E E K +K+KK KKKK++ K
Sbjct: 228 EGGELIEKPQAEAENEAGKSDKKDKKSKKKKVLGK 262
Score = 27.5 bits (61), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E E EK + + E E K +K+ +K KKKK
Sbjct: 228 EGGELIEKPQAEAENEAGKSDKKDKKSKKKK 258
>gnl|CDD|233879 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
sucrose phosphate phosphatase, plant. Members of this
family are sucrose-phosphate synthases of plants. This
enzyme is known to exist in multigene families in
several species of both monocots and dicots. The
N-terminal domain is the glucosyltransferase domain.
Members of this family also have a variable linker
region and a C-terminal domain that resembles sucrose
phosphate phosphatase (SPP) (EC 3.1.3.24) (see
TIGR01485), the next and final enzyme of sucrose
biosynthesis. The SPP-like domain likely serves a
binding and not a catalytic function, as the reported
SPP is always encoded by a distinct protein.
Length = 1050
Score = 31.3 bits (71), Expect = 0.45
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKE 200
N+ KKK+ E EE + K++ E E ++E
Sbjct: 86 NLARKKKQLEWEEAQRLAKRRLERERGRRE 115
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 30.8 bits (69), Expect = 0.45
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK--KLPLSAWK 93
L +L+HPN++ + + + K ++F + +F + +K N K +LP K
Sbjct: 52 LRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVK 111
Query: 94 RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNG 129
QIL + YLH+ ++H +L I + G
Sbjct: 112 SLLYQILDGIHYLHANW--VLHRDLKPANILVMGEG 145
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 30.8 bits (70), Expect = 0.45
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
L L+H NIV H D + K + + EY+ + LKQ++ + + + +
Sbjct: 57 LKDLKHANIVTLH----DIIHTKKTLTLVFEYLDT-DLKQYMDDCGGGLS---MHNVRLF 108
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
Q+L L+Y H ++H +L + I G +K+
Sbjct: 109 LFQLLRGLAYCH--QRRVLHRDLKPQNLLISERGELKL 144
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 29.9 bits (68), Expect = 0.47
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
++E+ +E E++K+ +K E+K K ++KEK+K
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.2 bits (66), Expect = 0.77
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
+ + + +E EK+K+ ++ EKK ++ +++K+K
Sbjct: 97 RLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.2 bits (66), Expect = 0.89
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 186 EKKKKKKEEEEKKKEKEKEKKKKKKK 211
++++ KE EK+K K ++KK K+
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKR 123
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
KK + ++ K++ E+EK+ K +EKK K++
Sbjct: 90 KKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 27.2 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 174 EKKKEKEEEEEEEKKKKK-KEEEEKKKEKEKEK 205
+++ +E E+EK+ +K +E++ K+++KEKEK
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 26.9 bits (60), Expect = 4.7
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K++ E K++ ++E+ +K +EK+ K+++K+
Sbjct: 91 KRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 26.9 bits (60), Expect = 5.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+ +E +E +K+K+ + +KK K ++K+K+K
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 30.9 bits (70), Expect = 0.48
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
Query: 36 LTQLEHPNIVKFHRYWTDTHN------DKPRVIFITEYMSS---GSLKQFLKR-TKRNVK 85
L QL H NIV TD + DK + EYM G L+ L ++ ++K
Sbjct: 60 LRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIK 119
Query: 86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
Q+L L+Y H + +H ++ C I + + G +K+
Sbjct: 120 SF--------MKQLLEGLNYCHKKN--FLHRDIKCSNILLNNKGQIKL 157
>gnl|CDD|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain. This domain
is the second of two tandem AAA domains found in a wide
variety of helicase enzymes.
Length = 165
Score = 30.2 bits (69), Expect = 0.50
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 46 KFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+ +K + + GS ++ L+R K+ + W
Sbjct: 24 QVAELLASELLEKGIELLV---QGEGSREKLLERFKKGKGAILFGVGSFW 70
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 31.1 bits (71), Expect = 0.50
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
N EKKKE + + E+K KK+E++EK K +EKE
Sbjct: 645 NWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 28.0 bits (63), Expect = 5.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 172 VTEKKKEK---EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
T+K KE EE EEE + + E K ++E+E ++ + EE
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEK 271
Score = 28.0 bits (63), Expect = 5.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
T + T+ K+++E EE EE+E + E K + K + EE
Sbjct: 245 TTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 27.7 bits (62), Expect = 5.8
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 165 IVTKTNNVTEKKKEKEEEEE------EEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
TK T + +E+EEE + E K K+E+E +E ++K+ + E+
Sbjct: 221 FFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL 280
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E K K+E+E ++ EEK+ + E K + + K++
Sbjct: 248 ETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 30.5 bits (69), Expect = 0.52
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
N +K KE++ E EE +K++ E+ E+ E + E+ K + KEEN
Sbjct: 23 NKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENN-KLKEEN 70
Score = 27.4 bits (61), Expect = 5.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E+ E EE E+EE + +E E K E+ K++ K K+ +K EN
Sbjct: 31 EEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLEN 75
Score = 27.4 bits (61), Expect = 5.4
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K N+ E ++ E +EE+K K++ E E+ +++E + ++ ++ EE
Sbjct: 9 KHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEE 58
Score = 27.0 bits (60), Expect = 7.1
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ K E EE+ ++ + K+E++ K+++ E E+ +K++ I EE+
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEES 51
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 30.8 bits (70), Expect = 0.53
Identities = 7/55 (12%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ + + ++++ E EE+K + +E + +K + + ++++ + E
Sbjct: 7 ALAELAKELRKLTEDEKLAEAEEEKAEYDALKE-EIDKLDAEIDRLEELLDELEA 60
Score = 30.8 bits (70), Expect = 0.56
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ E KE + E+EK + +EE+ + ++E K +I R EE
Sbjct: 4 LREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEE 53
Score = 28.1 bits (63), Expect = 4.3
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E+ + +TE +K E EEE+ + KEE +K + ++ ++ K
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 30.4 bits (68), Expect = 0.53
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 25 QEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
QE KI+ + E L Q +HPNIVK T + + + E + G FL++ K
Sbjct: 33 QELKIKFLSEARILKQYDHPNIVKLIGVCT----QRQPIYIVMELVPGGDFLSFLRKKKD 88
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+K L ++ + ++YL S + IH +L + N ++KI
Sbjct: 89 ELKTKQLV---KFALDAAAGMAYLESKN--CIHRDLAARNCLVGENNVLKI 134
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.9 bits (70), Expect = 0.54
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
++E +E+++ + +E +E+ ++K+K KKK +K+
Sbjct: 328 LSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKR 367
Score = 29.0 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E++E+E+ ++ K+E E+K+K K+K +K+K
Sbjct: 338 IDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 27.8 bits (62), Expect = 4.2
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ E + + E++E+ KE+ ++K+K KKK +++ N
Sbjct: 326 KSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 30.2 bits (68), Expect = 0.56
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
+VT ++ ++K E++KK K K+ + K K+ E +KK +
Sbjct: 71 LVTGNTGISWRRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 30.0 bits (68), Expect = 0.57
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
K + +EE E +++ +E+++ +K KEK ++++
Sbjct: 31 YEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 168 KTNNVTEKKKEKE-----EEEEEEKKKKKKEEEEK---KKEKEKEKKKKKKKIMRKEEN 218
K N +K E EE E +K+ EE++K +K KEK ++++ K + E
Sbjct: 27 KPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENA 85
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 30.6 bits (69), Expect = 0.58
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ + + +K E EE +K+K+K++E + EK E K K I K++
Sbjct: 427 EEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKK 482
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 29.6 bits (67), Expect = 0.61
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
K K+K + E+ EKK K++ EK++ EK + K
Sbjct: 30 LLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 26.6 bits (59), Expect = 6.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KK K +++ + +K +KK + + + EK + +K + K
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 30.4 bits (69), Expect = 0.62
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K + +K+ + +E E KKK EE+KK+K+K+ KKKK
Sbjct: 151 KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKK 194
Score = 27.3 bits (61), Expect = 5.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KK++ + +E E + KK+ ++EK+K+KKK KK
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKK 192
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 28.8 bits (65), Expect = 0.66
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 160 SGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK--IMRKEE 217
+G + + N ++ E+++E+ + K ++ + ++K+K+K+K KKK K I+RK+E
Sbjct: 3 AGGPSVPEQLPNGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKE 62
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 30.4 bits (69), Expect = 0.66
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E+K E+EE+E+EE++++++E EE + E+
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 27.7 bits (62), Expect = 4.9
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKE 200
N +K +E+E+E+EEE++++++ EE + +E
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 27.3 bits (61), Expect = 7.3
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
T N + ++E++E+EEEE+++++ EE E ++
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 30.4 bits (68), Expect = 0.66
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 26 EEKIQQVFENLTQL-EHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRN 83
+E+I+ + L L HPN+VKF+ ++ ++ + E + GS+ + +K
Sbjct: 62 DEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLIC 121
Query: 84 VKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
++L + L L +LH+ IIH ++ + I + G VK+
Sbjct: 122 GQRLDEAMISYILYGALLGLQHLHNNR--IIHRDVKGNNILLTTEGGVKL 169
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.4 bits (69), Expect = 0.70
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ K +EEEE E K+K+EE K E+E + + K+ +++
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQ 223
Score = 30.4 bits (69), Expect = 0.82
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ + EEEEE E+ K+K EE K +E+ + + K E+
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQ 223
Score = 28.1 bits (63), Expect = 3.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ E K E+EEE E K+K++E K +E+ + + K+ + K+
Sbjct: 178 KLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLR 225
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/47 (21%), Positives = 28/47 (59%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ EK++E + EEE + + +E +++ + + +++K+ +RK+
Sbjct: 192 RALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKK 238
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 30.0 bits (68), Expect = 0.72
Identities = 12/49 (24%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKK-EEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ +++++ E+ E + ++ EE E+++ +EKE++KK+ K ++ E
Sbjct: 156 ELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREK 204
Score = 27.7 bits (62), Expect = 4.2
Identities = 11/31 (35%), Positives = 27/31 (87%)
Query: 185 EEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
EE +++++EE+E++K+++KE+K+++K+ K
Sbjct: 179 EEAERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 30.2 bits (68), Expect = 0.73
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLK-RTKRNV---------- 84
+ + +HPNIVK KP + + EYM+ G L +FL+ R+ R
Sbjct: 62 MAEFDHPNIVKLLGVCAV---GKP-MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSA 117
Query: 85 -----KKLPLSAWKRWC--SQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDT 137
LPLS ++ C Q+ + ++YL +H +L + N +VKI
Sbjct: 118 RKCGLNPLPLSCTEQLCIAKQVAAGMAYL--SERKFVHRDLATRNCLVGENMVVKIADFG 175
Query: 138 YTHTIENKKYLSA 150
+ I + Y A
Sbjct: 176 LSRNIYSADYYKA 188
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 30.4 bits (68), Expect = 0.73
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEEEE------EEKKKKKKEEEEKKKEKEKEKKKKK 209
PI + +V NN E E E E + +K+K EE+K + K++
Sbjct: 75 RLPIKTKDNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQID 134
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 30.4 bits (68), Expect = 0.73
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 26 EEKIQQVFENLTQL-EHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSL----KQFLKR 79
+E+I+ + L L +HPN+VKF+ Y+ + ++ + E + GS+ K FLKR
Sbjct: 58 DEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKR 117
Query: 80 TKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+R + P+ A+ + L L +LH IH ++ + I + G VK+
Sbjct: 118 GERMEE--PIIAY--ILHEALMGLQHLHVNK--TIHRDVKGNNILLTTEGGVKL 165
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 0.74
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 164 EIVTKTNNVTEKKKEK-------EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+I+TK KK K + EEE++KKK +EEKK KE+++K ++
Sbjct: 69 KILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 27.2 bits (61), Expect = 5.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 192 KEEEEKKKEKEKEKKKKKKKIMRKEE 217
+EE+EKKK KE+KK K+ K E
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLE 120
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 28.1 bits (63), Expect = 0.79
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
KKKE + EEE+ +++++ + E++KE+EK K
Sbjct: 24 AKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.5 bits (59), Expect = 2.9
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
K K+KE + EEEK+++++E ++++ KE+EK K
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.5 bits (59), Expect = 2.9
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
++ K K K++E + E++K+++EEE +K+E+ KE++K K
Sbjct: 17 DLLAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 29.9 bits (67), Expect = 0.79
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 36 LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRW 95
+T+L H N+V+ HN + + E MS G+L FL+ R + + + ++
Sbjct: 53 MTKLHHKNLVRL--LGVILHNG---LYIVMELMSKGNLVNFLRTRGRAL--VSVIQLLQF 105
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+ + YL S ++H +L I + +G+ K+
Sbjct: 106 SLDVAEGMEYLE--SKKLVHRDLAARNILVSEDGVAKV 141
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 29.1 bits (66), Expect = 0.80
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E E K++KK+ ++KKE+EKE+K++ K+ +K
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKA 127
Score = 26.8 bits (60), Expect = 4.9
Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 176 KKEKEEEEEEEKK--KKKKEEEEKKKEKEKEKKKKKKK 211
K E E ++E+KK K+KKEEE+++K + K++KKK K
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 29.6 bits (67), Expect = 0.80
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+ + EEE E +K + EE EKK E+ EKK+K+ ++ ++
Sbjct: 14 RAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQ 52
Score = 28.8 bits (65), Expect = 1.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
E + EK E EE +KK ++ E+K+K+ E EK+
Sbjct: 20 EFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQ 52
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 28.4 bits (64), Expect = 0.82
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+ + T+ V EKK+E+EE++EE ++ KKEEE +
Sbjct: 44 DYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 29.5 bits (67), Expect = 0.83
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
+ K + ++E+ + + KE E K KE E E
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 26.8 bits (60), Expect = 6.9
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+ + K+E+ + K+ E + K+ E E + +
Sbjct: 74 AKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.0 bits (67), Expect = 0.84
Identities = 15/43 (34%), Positives = 33/43 (76%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K++E+ + EEE++++K+EE ++K +E+EK++ K++I R+
Sbjct: 222 KREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRA 264
Score = 27.7 bits (61), Expect = 5.3
Identities = 14/37 (37%), Positives = 28/37 (75%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
EK K+K++E E ++ KK+ EE++K E+E++++K+
Sbjct: 203 EKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQ 239
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.8 bits (67), Expect = 0.84
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEE-EEKKKEKEKEKKKKKKKI 212
+K +EK +EE +E KK+ KE +E+ +EK+ + +K+I
Sbjct: 2 SKEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEI 48
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 30.2 bits (68), Expect = 0.93
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
E E+E+E + ++ + EE+ +EKEKEK+K+ KK+M
Sbjct: 263 TGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMM 302
Score = 29.4 bits (66), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+ E E+E + ++ EEE ++KEKEK K+ KK
Sbjct: 262 PTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKK 300
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.0 bits (68), Expect = 0.97
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKK 199
T++ K +EE +EE ++ KK E E+ +
Sbjct: 254 TDRTKTEEELAKEEAERLKKLEAERLR 280
Score = 27.7 bits (62), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 176 KKEKEEEEEEEKKKKKKE--EE------EKKKEKEKEKKKK 208
E++EEE+ E+KK KKE +E K E++K K++
Sbjct: 160 DDEEDEEEQPERKKSKKEVMKEVIAKSKFYKAERQKAKEED 200
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.5 bits (67), Expect = 1.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E E+EKKK +EE+K ++EK+K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPYGY 126
Score = 28.3 bits (64), Expect = 2.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
E +KEK++ +E+KK KEE++K +E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 29.5 bits (67), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKK 199
E+K +EE E+ EKKK EE+K+K
Sbjct: 8 EEKLNEEEREKLEKKKSSLSEEDKEK 33
Score = 27.2 bits (61), Expect = 6.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
+K EEE E+ +KKK EE K++ + +
Sbjct: 9 EKLNEEEREKLEKKKSSLSEEDKEKIIERGLE 40
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 30.1 bits (68), Expect = 1.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKK-EKEKEKKKKKKK 211
N E++K + E E E +K+K EK K+ K+K KK
Sbjct: 235 KNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKK 277
Score = 27.4 bits (61), Expect = 7.5
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K KEE++ + + ++ E +KEK +K K + K +
Sbjct: 235 KNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKK 277
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 29.9 bits (67), Expect = 1.1
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 161 GQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
E + + + K E E E + + + EEE +E+E E K ++
Sbjct: 238 EVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+K+K+ E+ +K+ K+ E + K EKE K+ +K++
Sbjct: 414 QKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQL 452
Score = 29.6 bits (67), Expect = 1.4
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 170 NNVTEKKKE---KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ E KKE EE+ E+ + + +K+EEE +K K K K KK+ +K ++
Sbjct: 95 AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Score = 28.4 bits (64), Expect = 3.0
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 174 EKKKEKEEE-EEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E+ E E + EE +K+ KK EE+ ++ E E EKK+++ + + +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 27.3 bits (61), Expect = 8.3
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 176 KKEKEEEEE-EEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++ E E + EE KK+ K+ EEK ++ E E +KK++++ + +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 29.8 bits (67), Expect = 1.1
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 157 RPISGQ--YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
+PI + Y + N TE++ + + ++ E +E + E E ++++KK R
Sbjct: 523 KPIPDKHLYRLCWSLRNSTEERIDLDADDWTE--------DEDENEMETDEERKKPGCCR 574
Query: 215 KEEN 218
K N
Sbjct: 575 KAYN 578
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 29.7 bits (67), Expect = 1.1
Identities = 15/55 (27%), Positives = 21/55 (38%)
Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
I + + E+E EEEEEK +K E + KE K+ K
Sbjct: 225 VNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESK 279
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 29.5 bits (66), Expect = 1.1
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 139 THTIENKKYLSATRQTYGRP---ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEE 195
H ++ + YG I T E KK K + + K K + +
Sbjct: 108 IHHLQMLHHPQLGDNPYGTREMHHLEVPPISTAPPEAKEVKKPK--KGQSPKVPKAPKPK 165
Query: 196 EKKKEKEKEKKKKKK 210
+ KK+ + K
Sbjct: 166 KPKKKGSVSNRSVKM 180
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 29.4 bits (66), Expect = 1.1
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 42 PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILS 101
PN+V H+Y + V + ++ G L + + +P KRW ++++
Sbjct: 45 PNMVCLHKYIVSEDS----VFLVLQHAEGGKLWSHISKFLN----IPEECVKRWAAEMVV 96
Query: 102 ALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
AL LH I+ +L + I + G +++
Sbjct: 97 ALDALH--REGIVCRDLNPNNILLDDRGHIQL 126
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 29.3 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEK---EKKKKKKKIM 213
V ++ E EK++ K+E EE K E EK E +K+ KI+
Sbjct: 73 VEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEKRTKIL 117
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 28.8 bits (65), Expect = 1.3
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKE-------KEKKKKKKKIMRK 215
V + E+ + EE+KK+K+++++KKKE E +EKKK+++ + K
Sbjct: 55 TVVRGGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLK 112
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
KEK+EE++EEK ++ K EE ++ +E+EK
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 29.0 bits (65), Expect = 2.5
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
EKK+EK+EE+ EE K ++ +EE +++EK
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 27.9 bits (62), Expect = 5.1
Identities = 11/30 (36%), Positives = 24/30 (80%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
K+K++E++EE+ ++ K +E +E+ +E+EK
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 27.5 bits (61), Expect = 7.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+ K E+K E+ + EE +++ +++E+ + EK + KK
Sbjct: 278 ELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 27.1 bits (60), Expect = 9.4
Identities = 11/38 (28%), Positives = 27/38 (71%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+KKE+++EE+ E+ K ++ +EE ++E++ + +K+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKV 318
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
Q + +N +++ E ++++E K K + KE ++ + +K++I + +
Sbjct: 233 QQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQ 287
>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; pseudokinase domain (repeat 1). The
PTKc (catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal tyr kinase domain. The pseudokinase
domain shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak2 is widely expressed in
many tissues while Jak3 is expressed only in
hematopoietic cells. Jak2 is essential for the signaling
of hormone-like cytokines such as growth hormone,
erythropoietin, thrombopoietin, and prolactin, as well
as some IFNs and cytokines that signal through the IL-3
and gp130 receptors. Jak3 binds the shared receptor
subunit common gamma chain and thus, is essential in the
signaling of cytokines that use it such as IL-2, IL-4,
IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice
results in an embryonic lethal phenotype with multiple
defects including erythropoietic and cardiac
abnormalities. It is the only Jak gene that results in a
lethal phenotype when disrupted in mice. A mutation in
the pseudokinase domain of Jak2, V617F, is present in
many myeloproliferative diseases, including almost all
patients with polycythemia vera, and 50% of patients
with essential thrombocytosis and myelofibrosis. Jak3 is
important in lymphoid development and myeloid cell
differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 258
Score = 29.4 bits (66), Expect = 1.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 62 IFITEYMSSGSLKQFLKRTKRNVKKLPLSAWK-RWCSQILSALSYLHSCSPPIIHGNLTC 120
I + EY+ GSL +LK+ K + WK Q+ AL +L + HGN+
Sbjct: 75 IMVQEYVKFGSLDTYLKKNKNLINIS----WKLEVAKQLAWALHFLEDKG--LTHGNVCA 128
Query: 121 DTIFIQHNGLVKIG 134
+ + K G
Sbjct: 129 KNVLLIREEDRKTG 142
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 28.8 bits (65), Expect = 1.3
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KK EKEE E ++ +K+ E+ KK+E+ +E K++++K
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 29.2 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
K + KK+K ++EEE KK KKK E K + ++K K
Sbjct: 115 KHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 28.8 bits (65), Expect = 1.5
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 187 KKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KKKK K+EEE KK K+K + K +RK+ +
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNH 154
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 29.4 bits (66), Expect = 1.4
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K N + + E + K KKE+ KK+++ +++ K
Sbjct: 332 KLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIK 375
Score = 27.1 bits (60), Expect = 8.4
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
T ++ E K KK+K +++K+ ++E K
Sbjct: 339 TARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKA 376
>gnl|CDD|215349 PLN02647, PLN02647, acyl-CoA thioesterase.
Length = 437
Score = 29.4 bits (66), Expect = 1.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
TE++K EE E K +KK+ E+K+E E + ++ + ++
Sbjct: 226 TEEEKLLFEEAEARNKLRKKKRGEQKREFENGEAERLEALLA 267
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.2 bits (66), Expect = 1.4
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E EEE++E KK K++ +E+ E+++E+ ++++ ++E
Sbjct: 133 EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 28.5 bits (64), Expect = 2.7
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
EK + ++ +E+ ++ +E+EE+ E+E+ + +K+K
Sbjct: 137 EKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 28.5 bits (64), Expect = 2.8
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E+K E ++ +E+ ++ EE+E++ +E+E + +K+K
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174
Score = 28.5 bits (64), Expect = 3.0
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
++ +K +E+ +E+ ++ EEE ++E+ + +K+K ++
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASEL 177
Score = 27.3 bits (61), Expect = 6.9
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++EEE++E KK KE+ +++ +E E++ +++ E+
Sbjct: 132 SEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
N + +E+EE EE + +K++EE+ + +++E++++ K K+
Sbjct: 135 KNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
Score = 27.1 bits (60), Expect = 6.7
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 12/67 (17%)
Query: 164 EIVTK-TNNV----TEKKKEKEEEEEEE-------KKKKKKEEEEKKKEKEKEKKKKKKK 211
+IV TNN+ T+KK E ++E ++ K +++EE E+ E EKE++++++
Sbjct: 104 DIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRL 163
Query: 212 IMRKEEN 218
+++KEE
Sbjct: 164 LLQKEEE 170
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 28.4 bits (64), Expect = 1.5
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
EEE+ ++ K+ EEE ++ E E+E+ K+K+ + K+
Sbjct: 87 EEEQLRRIKELEEELREVEAEREEAVKEKEKLLKK 121
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 28.4 bits (64), Expect = 1.5
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 10/46 (21%)
Query: 175 KKKEKEEEEEEE----------KKKKKKEEEEKKKEKEKEKKKKKK 210
K + E+EE + +++KK+ E+++K+E EK +++ K
Sbjct: 54 GKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREENPK 99
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 28.9 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKE------KEKKKKKKKIMRKEE 217
+ EE +E +KKK++ E+ +KE + EKK+K K RKE
Sbjct: 120 RRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEA 169
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 29.7 bits (66), Expect = 1.5
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 25 QEEKIQQVFEN--LTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
+ EK Q V E + +L+H NIV++ + + N K + + E+ +G L + +++ +
Sbjct: 53 EREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK--LYILMEFCDAGDLSRNIQKCYK 110
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCS-----PPIIHGNLTCDTIFIQHNGLVKIG 134
K+ A Q+L AL+Y H+ ++H +L IF+ G+ IG
Sbjct: 111 MFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLS-TGIRHIG 166
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 29.5 bits (67), Expect = 1.5
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 151 TRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEK--KKKKKEE------------EE 196
R+ P+ Y TK + +E EE + K EE E
Sbjct: 727 VRRLRQNPMKMLYPYTTKALPSEATGEYGNGDESEESDFDEYKLEEAREMLLAMHLLSAE 786
Query: 197 KKKEKEKEKKKKKKKIMRK 215
+++EK+ +KK ++
Sbjct: 787 ERQEKKAKKKNSGPALLSS 805
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 28.3 bits (63), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKK 206
E E+ KKKKKK ++ KK +K +K
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.8 bits (59), Expect = 4.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKK 207
E E+ KKKKK+ ++ KK K+ KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.4 bits (58), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKK 208
E EK KKKK++ +K K+ +K KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E ++ + E E+ ++ + K+ E + K+K+
Sbjct: 456 EARQARLEREKAAREARHKKAAEARAAKDKD 486
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 29.3 bits (65), Expect = 1.6
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 27 EKIQQVFENLTQLEHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVK 85
E IQQ L+Q + P + K++ Y DT ++ I EY+ GS L+ +
Sbjct: 47 EDIQQEITVLSQCDSPYVTKYYGSYLKDT-----KLWIIMEYLGGGSALDLLEPGPLDET 101
Query: 86 KLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
++ +IL L YLH S IH ++ + + +G VK+
Sbjct: 102 QIATI-----LREILKGLDYLH--SEKKIHRDIKAANVLLSEHGEVKLA 143
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 29.1 bits (66), Expect = 1.6
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
V EK+K +E E ++ + EE K+K+K+K+KKKKK+++
Sbjct: 62 VQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEEL 102
>gnl|CDD|234235 TIGR03503, TIGR03503, TIGR03503 family protein. This set of
conserved hypothetical protein has a phylogenetic range
that closely matches that of TIGR03501, a putative
C-terminal protein targeting signal.
Length = 374
Score = 29.2 bits (66), Expect = 1.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 156 GRPISGQYEIVTKTNNVTE--KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
GR + Q + + NV E + + EE E+ K K E+E+ E+E K K I+
Sbjct: 293 GREL--QLTLPEFSFNVEEPPEAEPSAEEAATEEALKAKAEQEQALLVEREAKDSKFWII 350
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 27.6 bits (62), Expect = 1.6
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 182 EEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EE+EEK+ K+K +E K+K+K+K KKK
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKK 59
Score = 27.6 bits (62), Expect = 1.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EE+EE+E K+K E K+K+K K KKK+
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 28.7 bits (65), Expect = 1.6
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+ + ++EKEE E+ + + K E +K+E+E+ + ++K+
Sbjct: 129 IKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKR 167
Score = 26.4 bits (59), Expect = 9.0
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+K + E+ + E +++ K+ EE+K+E EK + + K+
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKL 150
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 29.4 bits (66), Expect = 1.7
Identities = 5/37 (13%), Positives = 19/37 (51%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
E+ ++ + +K + ++K +E+ E+ +++
Sbjct: 380 EQRQQLWFFENRKLWQRKKKLREQADEEYQQRHATRA 416
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 29.2 bits (65), Expect = 1.7
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 24 AQEEKIQQVFENLTQLEHPNIVKFH-RYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKR 82
A +I + + L + P IV F+ +++D + E+M GSL Q LK+
Sbjct: 45 AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE-----ISICMEHMDGGSLDQVLKKA-- 97
Query: 83 NVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
++P + ++ L+YL I+H ++ I + G +K+ CD
Sbjct: 98 --GRIPEQILGKVSIAVIKGLTYLRE-KHKIMHRDVKPSNILVNSRGEIKL-CD 147
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 29.0 bits (65), Expect = 1.7
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 48 HRYWTDTH---NDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALS 104
H + T H K R+ F+ EY++ G L ++R+ +K + + +++ AL
Sbjct: 55 HPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS----RKFDEPRSRFYAAEVTLALM 110
Query: 105 YLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
+LH +I+ +L D I + G K+
Sbjct: 111 FLHRHG--VIYRDLKLDNILLDAEGHCKL 137
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 29.2 bits (66), Expect = 1.7
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+ NV + E + + +E K KE+E K+K+KEK++KK +I
Sbjct: 353 VRNLALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEA 403
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 28.7 bits (65), Expect = 1.7
Identities = 10/49 (20%), Positives = 28/49 (57%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ + ++ E + + E+ KK +++ EE + +E ++ +K+ K ++ E
Sbjct: 77 ELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
>gnl|CDD|184861 PRK14859, tatA, twin arginine translocase protein A; Provisional.
Length = 63
Score = 27.0 bits (60), Expect = 1.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKK 199
KK E+EE E K KKE+++KKK
Sbjct: 40 KKATSEKEEIEIKPTKKEDKKKKK 63
Score = 26.2 bits (58), Expect = 3.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKK 198
KK E+EE E K KK+++++KK
Sbjct: 40 KKATSEKEEIEIKPTKKEDKKKKK 63
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
+G + + N KE++ E E + KK+ E +E E
Sbjct: 412 SAGLFLAIGNYINYRLLAKEQKAALEREGARDKKDAEGDSRESE 455
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 28.6 bits (64), Expect = 1.8
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 154 TYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
TY + ++ V + EE ++ K KK+++E KK E EK++KKK
Sbjct: 103 TYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEEKKK 159
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP). This family
consists of several eukaryotic kinesin-associated (KAP)
proteins. Kinesins are intracellular multimeric
transport motor proteins that move cellular cargo on
microtubule tracks. It has been shown that the sea
urchin KRP85/95 holoenzyme associates with a KAP115
non-motor protein, forming a heterotrimeric complex in
vitro, called the Kinesin-II.
Length = 708
Score = 29.1 bits (65), Expect = 1.8
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 158 PISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK--KKKKKIMRK 215
P+ Y+I NV E + ++ E EE KKKK EEK K+ ++ KK K +++K
Sbjct: 198 PLIVHYKIGALCMNVIEHELKRYEFWIEELDKKKKMNEEKPILKKDYEETLKKLKGLIKK 257
Query: 216 EE 217
+E
Sbjct: 258 QE 259
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 27.2 bits (61), Expect = 1.9
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
KE+ EE EEKK+K++EE+E++KE K ++ + +K
Sbjct: 44 KEEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 25.3 bits (56), Expect = 9.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKE 202
E+KK K+EEE+E +K+ +K E + +++
Sbjct: 52 EEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 28.6 bits (64), Expect = 1.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 149 SATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
S + RP + + TK + +K+K EEE++ E K EE E + +E
Sbjct: 47 SPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDS 106
Query: 209 KK 210
++
Sbjct: 107 QE 108
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 27.2 bits (61), Expect = 1.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 188 KKKKKEEEEKKKEKEKEKKKKKKKIM 213
KKKK ++ KK + + EKKKK KK +
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKKI 54
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 28.9 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K +EE+ KE E E ++ KKKK + K
Sbjct: 77 TGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSP 120
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 29.3 bits (66), Expect = 1.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKE-KEKEKKKKKKK 211
EKK + + +++ +K KK + +K K K+ KKK
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKK 810
Score = 27.0 bits (60), Expect = 9.9
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEE------KKKEKEKEKKKKKKKIMRK 215
KT KK + ++ + ++ KK E +K+ + + KK + +K
Sbjct: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKK 789
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 29.2 bits (65), Expect = 1.9
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 145 KKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEK-KKKKKEEEEKKKEKEK 203
K+ T P+ E+V + +K+ +K K + EE+K EK+
Sbjct: 78 KRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKV 137
Query: 204 EKKKKKKKIMRKEEN 218
K++K KK+ E+
Sbjct: 138 RKRRKVKKMDEDVED 152
>gnl|CDD|224279 COG1360, MotB, Flagellar motor protein [Cell motility and
secretion].
Length = 244
Score = 28.9 bits (65), Expect = 1.9
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+ K ++ +E+E ++ E +KKE ++ K++ K
Sbjct: 57 SGAPGSASEGGKSMQQVKEKELAEELNVGEAIEKKELSEKLGDLAKELESK 107
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7 plays
a role in protein translation. Deletions of the TMA7
gene results in altered protein synthesis rates.
Length = 63
Score = 26.7 bits (59), Expect = 1.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
KK++KE +EE+ K+K++EE K ++ K K K
Sbjct: 15 KKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGK 49
Score = 26.7 bits (59), Expect = 2.1
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
KK+K+E +EE+ K+K++EE K KE K K K +
Sbjct: 15 KKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKGPL 52
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
EK E E + E + +++ EK+KE+E+ + +++
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQER 239
Score = 27.3 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
T K+K E E + K E E ++E +EK+K+++++M +E
Sbjct: 200 TAKEKAIEAE------RAKAEAAEAEQELLREKQKEEEQMMEAQER 239
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 29.2 bits (65), Expect = 2.0
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
E++ E EE+EE +K+ K +EK +E+E+E+ K K +
Sbjct: 143 EEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFI 182
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 29.2 bits (66), Expect = 2.0
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
++ ++EEE + K +EE ++E+E
Sbjct: 309 LRRRSKQEEEAAAEAAKAQEEAAEEEEESIN 339
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 28.8 bits (65), Expect = 2.0
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K+ EK+EE++E+ +KK E K+ EKE +K++ K
Sbjct: 155 KEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 26.9 bits (60), Expect = 8.2
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
EK++EK+E+ E+K ++ + KK EKE EK++ K
Sbjct: 157 AEKQEEKQEQSPEKKLERSRSS--KKIEKEVEKRQAK 191
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 28.9 bits (65), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K KEEE EK+ ++EE + EK KK ++ + R EE
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEE 436
Score = 27.7 bits (62), Expect = 4.9
Identities = 10/45 (22%), Positives = 28/45 (62%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+ E K+E E+ E E ++ +++ ++ +K++E + ++ + + KE
Sbjct: 445 LEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489
Score = 27.4 bits (61), Expect = 7.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
+E E+ KK+ EE E+++++E +
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEEDILR 640
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K KE+E E+E ++++ E EK +K ++ + + +E
Sbjct: 393 ALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEE 437
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 28.7 bits (64), Expect = 2.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
V E + E+ +E +K EE+ EKEK +K K+
Sbjct: 41 LVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPA 83
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 28.9 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 174 EKKKEKEEEEEEE-------KKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E E E E E K+K K + ++K+ KE E++ K++K ++K+
Sbjct: 256 ESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Score = 28.5 bits (64), Expect = 2.9
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 10/54 (18%)
Query: 175 KKKEKEEEEEEEKKKKKKE----------EEEKKKEKEKEKKKKKKKIMRKEEN 218
++KE E E +EEK+ KKK +E +KEK + +KK+++K +++
Sbjct: 288 RRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKK 341
Score = 27.7 bits (62), Expect = 4.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
E + EEE ++E + E E + K K+K K KE
Sbjct: 244 ESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKE 286
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 28.8 bits (64), Expect = 2.1
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
V +T+ M G L +++ K + L W C QI +SYL ++H +L
Sbjct: 83 VQLVTQLMPYGCLLDYVRENKDRIGSQDLLNW---CVQIAKGMSYLEEVR--LVHRDLAA 137
Query: 121 DTIFIQHNGLVKI 133
+ ++ VKI
Sbjct: 138 RNVLVKSPNHVKI 150
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 28.8 bits (65), Expect = 2.1
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 98 QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
Q+L L Y+HS + +IH +L + + + ++IG
Sbjct: 115 QLLRGLKYIHSAN--VIHRDLKPSNLLVNEDCELRIG 149
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.0 bits (65), Expect = 2.2
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEE-EKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
EI ++ +KE E++ E EK K++E+ +K+ E+E E+ K++++ + E
Sbjct: 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.2 bits (65), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
TE E + EE K ++ K +E+ KK E + K+K +
Sbjct: 182 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE 221
Score = 28.8 bits (64), Expect = 2.8
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
EI+ + ++++++++ +EEE K KEEEE K E K +++K + +E+
Sbjct: 266 EILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 320
Score = 27.6 bits (61), Expect = 5.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ +K K EEE+EEK K ++EE +E+ KE+ + ++ E
Sbjct: 782 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 826
Score = 27.6 bits (61), Expect = 6.6
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+++ EEEE+ +K K EEE+++K K +E++ + + KEE
Sbjct: 770 LSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 814
Score = 27.6 bits (61), Expect = 6.7
Identities = 14/77 (18%), Positives = 34/77 (44%)
Query: 142 IENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
E ++ S + + +++K K +EEE +++ +EE + E+
Sbjct: 761 EEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 820
Query: 202 EKEKKKKKKKIMRKEEN 218
E+ ++++KI +E
Sbjct: 821 EQLLIEQEEKIKEEELE 837
Score = 27.6 bits (61), Expect = 7.0
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+EK +E E+E KK +KE +++K+E E+ +K+ K+ +++E
Sbjct: 310 KVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAE 355
Score = 27.2 bits (60), Expect = 7.4
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ +K+ K+E+EE E+ +K+ +E E K+E E+E++++ +K+ K E
Sbjct: 321 EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQ 371
Score = 27.2 bits (60), Expect = 8.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E EEK+++ ++E KK+ E+EKK+ ++I+ +
Sbjct: 974 GNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETC 1017
Score = 27.2 bits (60), Expect = 9.4
Identities = 11/51 (21%), Positives = 30/51 (58%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
+++ +T N+ E + EE + +E K K++ ++ + + KEK + +++ +
Sbjct: 178 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLL 228
Score = 27.2 bits (60), Expect = 9.7
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 141 TIENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKE 200
K L + Q +I + + +K KEKEEEEE+ + KK++EEEEK +
Sbjct: 711 EELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL 770
Query: 201 KEKEKKKKKKKIMRKEE 217
KEK+ +++ ++
Sbjct: 771 SLKEKELAEEEEKTEKL 787
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 28.5 bits (63), Expect = 2.2
Identities = 8/60 (13%), Positives = 42/60 (70%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
I + ++ + + + ++E+EE EE + ++++E+ ++++++E+++++++++ + ++ +
Sbjct: 115 IKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSD 174
Score = 26.6 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
EK E+E++EE+E++++++ EE+ + E E
Sbjct: 149 EKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 28.6 bits (65), Expect = 2.2
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR-KEEN 218
++ E EE E +++ ++ E K ++ E E +K ++++ R K E
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 28.9 bits (65), Expect = 2.2
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+E+ E+ +E EEE EE+ + + ++ KE+E+ +++ +++++
Sbjct: 145 FELEL-PEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQVIQRN 197
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 29.2 bits (66), Expect = 2.2
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKK-----KKKKEEEEKKKEKEKE 204
I + T EKKK K++ E+ + KK++E + EK++
Sbjct: 76 IFSTTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 28.9 bits (65), Expect = 2.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
K E EE + E++ E +K K KE+ ++ M +
Sbjct: 261 KTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPE 301
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 27.1 bits (60), Expect = 2.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+K+EE+ E + ++K E+ K K+K+ K++
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQE 65
Score = 26.3 bits (58), Expect = 5.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 174 EKKKEKEEEEEEEKK--KKKKEEEEKKKEKEKEKK 206
+KK+EK E E ++K +K K KKK+ ++E K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
Score = 25.5 bits (56), Expect = 7.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
KK++E+ E E ++K E+ + K+K+ K++ K +
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSLA 70
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 28.5 bits (64), Expect = 2.2
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E ++EEE EK+ +++E +KKK + + K+ K +K++
Sbjct: 67 ESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDP 107
Score = 27.3 bits (61), Expect = 5.2
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E++ EKE + EE KKKK+ + + KE K+KKKK
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPT 108
Score = 27.3 bits (61), Expect = 6.2
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E +KE + EE +KKK+ K K KE KKKKKK
Sbjct: 73 EGEKELQREERLKKKKRVK----TKAYKEPTKKKKKKDP 107
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 27.6 bits (62), Expect = 2.3
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 174 EKKKEKEEEEEEE----------KKKKKKEEEEKKKEKEKEKKKKKKKIM 213
E+ KE E +E+ K K +EE + K KEKEKKKKKKK +
Sbjct: 39 EEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKEL 88
Score = 26.4 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKE-------KKKKKKKIM 213
+K K EE + K K++E++KKK+KE E ++KKK+++
Sbjct: 60 GRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELA 105
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.1 bits (65), Expect = 2.3
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E+ E+EEEEEEE++++++E EE++ E E+E
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEE 472
Score = 27.6 bits (61), Expect = 7.1
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 152 RQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+ T R T + + +E EEEE E++++++EEEE+++++ +E
Sbjct: 412 QGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEE 464
Score = 27.2 bits (60), Expect = 7.9
Identities = 14/32 (43%), Positives = 27/32 (84%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E +E+EEEEEEE++++++ EEE+ +++E+E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEE 473
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 28.0 bits (63), Expect = 2.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
+ E K+E+ E E K +K +E+K+KE E+ K+++K M
Sbjct: 84 LALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQKEM 131
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 28.6 bits (64), Expect = 2.4
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEE--EEKKKEKEKEKKKKKKKI 212
E+++K K K ++ E +K++KK EE E+ KK EK ++ KK I
Sbjct: 7 ELISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKSGI 57
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 29.0 bits (65), Expect = 2.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 172 VTEKKKEKEEEEEEEKKK----KKKEEEEKKKEKEKEKKKKKKKIMR 214
V E EE++E K+ KK+E+++K +E K + +MR
Sbjct: 51 VEEVNSLSPEEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGEVVMR 97
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 28.9 bits (65), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
+ K+ +EE+ K + K EE K+ E K+K+
Sbjct: 384 NPEYKKTTSQEEQAKLEFIKLEELKRLENGKQKR 417
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 28.9 bits (65), Expect = 2.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
++K E+ E + EE ++ E+E+EKK++K I+
Sbjct: 246 RRKLYGEKRAERVR-----EELREVEREREKKRRKLGIL 279
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
I YE++ + EK E E+ ++ + E EKK+ K
Sbjct: 236 IESAYELIKLRRKL---YGEKRAERVREELREVEREREKKRRK 275
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 28.7 bits (64), Expect = 2.4
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KTN+ EK + K+E ++ +KK K E + + ++E+K++K I N
Sbjct: 112 KTNDDLEKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRN 162
>gnl|CDD|219395 pfam07387, Seadorna_VP7, Seadornavirus VP7. This family consists
of several Seadornavirus specific VP7 proteins of around
305 residues in length. The function of this family is
unknown. However, it appears to be distantly related to
protein kinases.
Length = 308
Score = 28.6 bits (64), Expect = 2.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 100 LSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKI 133
L L HS S +HG+ + NG +K+
Sbjct: 151 LKDLMDFHSESGGTLHGDCNPQNLMCDKNGYLKL 184
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase.
Length = 919
Score = 28.7 bits (64), Expect = 2.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 152 RQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
R ++ E + KT V+ +K +EEEE+ K K + + K KE K+
Sbjct: 49 RVVKSGVVAAISEDLVKTLRVSTVRKSEEEEEKAVKFKVRAVVTVRNKNKEDLKE 103
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+K E ++ EE +++ +E K K+K+++KK+ +K
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 27.7 bits (62), Expect = 4.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ + E+ + KK EE ++ +E K KKKK +KE
Sbjct: 389 LKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEW 437
Score = 27.0 bits (60), Expect = 8.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
+K + ++ EE +++ EE K +K+K KKK+ + R
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 28.3 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K KEK+++ EEEK+++K E ++ +E + K K
Sbjct: 101 AKFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAKL 137
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 27.8 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 168 KTNNVTEKKKEKEEE---EEEEKKKKKKEEEEKKKEKEKEK 205
K NV E +K K EE EE E+ +++ EE + E+ +++
Sbjct: 88 KKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 26.2 bits (58), Expect = 8.5
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
T + E++ ++ +K + EE +KE+ + +++ ++ + E
Sbjct: 78 KTGPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEE 124
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 28.7 bits (64), Expect = 2.7
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
+ + +Y ++G L+Q +K + + Q+L A+ ++HS +IH ++
Sbjct: 114 IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS--KHMIHRDIKS 171
Query: 121 DTIFIQHNGLVKIG 134
I + NGLVK+G
Sbjct: 172 ANILLCSNGLVKLG 185
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 28.5 bits (63), Expect = 2.8
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK---------KKIMRKEEN 218
E KK+K+E+E EE + K E +E + +K+MR +
Sbjct: 458 LALEPKKKKKEKEGEELQPKLVMNSEDASLASQEGMSIRGNSARHLVMQKLMRTNRS 514
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.9 bits (65), Expect = 2.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++ E+ EE +EK + KEE E+++ +E ++ ++ +E
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Score = 27.4 bits (61), Expect = 6.9
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ E+ +E E E +++ ++ E E ++ +E+ ++ K+K KEE
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338
Score = 27.4 bits (61), Expect = 8.1
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E E+ E+ E ++ K+E EEK +E ++ + +
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 27.9 bits (63), Expect = 2.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ E ++E EEE EE +++ +E +++ E + +K+ R+ E
Sbjct: 4 EEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREE 54
Score = 27.2 bits (61), Expect = 4.5
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K + +E+ EEE E+ +++ EE + + + + + +K +E
Sbjct: 3 KEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTERE 51
Score = 27.2 bits (61), Expect = 5.6
Identities = 13/37 (35%), Positives = 27/37 (72%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+E+EEEEE + +++ EE+ +E E+E ++ K +++R
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRL 37
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 27.3 bits (61), Expect = 2.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKE 200
E KK++KKEEEE++ +
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESD 95
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 28.5 bits (65), Expect = 2.9
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEK------KKKKKKIMRK 215
K+E+E + K++ + +++E+E EK KK +KKI+R+
Sbjct: 262 KQEREAALDAIKEEVLEALAAEEEEEEDEKEIKEAFKKLEKKIVRR 307
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 27.5 bits (61), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 159 ISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKE 193
I+ + K N KKE+E+EEE + K++E
Sbjct: 79 IAASIFMFVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 26.7 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+KEEE+EEE + KEEE + ++ K++ K
Sbjct: 94 TSKKEEEKEEEIPEPTKEEELLGEIRDLLKQQNSSK 129
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 28.5 bits (64), Expect = 2.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E+K EKEE E +K+ + +E+ +K + KK K++
Sbjct: 461 LEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKER 498
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 28.7 bits (64), Expect = 2.9
Identities = 11/38 (28%), Positives = 27/38 (71%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ +EK E E+ E+K++ K + E++++ ++E K+++ I
Sbjct: 7 RAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAI 44
>gnl|CDD|199206 cd08962, GatD, GatD subunit of archaeal Glu-tRNA amidotransferase.
GatD is involved in the alternative synthesis of
Gln-tRNA(Gln) in archaea via the transamidation of
incorrectly charged Glu-tRNA(Gln). GatD is active as a
dimer, and it provides the amino group required for this
reaction. GatD is related to bacterial L-asparaginases
(amidohydrolases), which catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. This CD spans
both the L-asparaginase_like domain and an N-terminal
supplementary domain.
Length = 402
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
+ EE E +K +K + E +E EK+ K I+
Sbjct: 41 DISIEEIELIEKGEKPKPELGEEIEKKPGLPKVSII 76
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 28.4 bits (63), Expect = 2.9
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 150 ATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
A ++ R + Q + + NN E + E+KKK + K K + K +K
Sbjct: 2 ARTKSRKRSGNNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEK 61
Query: 210 K 210
+
Sbjct: 62 E 62
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 28.3 bits (63), Expect = 3.0
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 161 GQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
GQ + EKK+ EE E+E ++ + +++ +K +EKEKKK+ +++
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEEL 192
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 28.5 bits (64), Expect = 3.0
Identities = 13/43 (30%), Positives = 30/43 (69%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+KKK+K+++ +K K KK +++K + K KK ++++ ++K+
Sbjct: 256 KKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 27.9 bits (62), Expect = 3.0
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 152 RQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
R+TY + G + V EK+ K E KK K E KE +EK K +
Sbjct: 93 RETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEV 151
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 28.7 bits (65), Expect = 3.0
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 23/80 (28%)
Query: 144 NKKYLSATR-QTYGRPISGQYEIVTKTNNVTEKKK-----------------EKEEEEEE 185
K+ LSA R QT P+ G IV + + K E E+EE
Sbjct: 805 GKRNLSAGRVQT---PVLGW--IVERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEA 859
Query: 186 EKKKKKKEEEEKKKEKEKEK 205
EK E EK +EKE+E
Sbjct: 860 EKFYNNLIEVEKVEEKEEEL 879
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 27.7 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
+KK KE+ ++ K KK+E E++K+++E+ K +
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAE 100
Score = 27.3 bits (61), Expect = 3.7
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+K K K+EE E+EK+K+++ + + +++ + +KKK K
Sbjct: 75 DKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKL 117
Score = 26.6 bits (59), Expect = 6.5
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
KK+E E+E+E+E++ K E +K+ E EKKK + K+M++E+
Sbjct: 79 AKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEK 122
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 28.4 bits (62), Expect = 3.0
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
EKKKE++ E+ K+ K E+ K K++ +K++K + + E+
Sbjct: 148 EKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARRED 192
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 27.3 bits (59), Expect = 3.1
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
K N EKK EK E E+E+K +K + E+EKK EK + + +K+
Sbjct: 59 IKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 28.1 bits (62), Expect = 3.1
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 29 IQQVFENLTQLEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLP 88
IQQ + + +H NIV + ++ + ++ EY GSL+ T P
Sbjct: 53 IQQEIFMVKECKHCNIVAYF----GSYLSREKLWICMEYCGGGSLQDIYHVTG------P 102
Query: 89 LSAWK--RWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIG 134
LS + C + L L+YLHS +H ++ I + NG VK+
Sbjct: 103 LSELQIAYVCRETLQGLAYLHSKGK--MHRDIKGANILLTDNGDVKLA 148
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 27.5 bits (61), Expect = 3.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
+V KE+E +E +++ EE ++ + +E++K K + M +E
Sbjct: 13 LKDVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEE 60
Score = 27.5 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
EEE+EE ++ +E EE++K K + K ++++++MR+
Sbjct: 31 DAEEEDEEIQEALREAEEERKAKHR-KMEEEREVMRQ 66
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 3.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
E+ K K+EE E KK+ EK +++ +E +K K++I +
Sbjct: 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
Score = 28.1 bits (63), Expect = 4.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
+KE E+ EE KKK E E+K E E+E + K++
Sbjct: 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
Score = 27.7 bits (62), Expect = 6.1
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 157 RPISGQYEIVTKTNNVTEKKKEKEEEEEEEK---KKKKKEEEEKKKEKEKEKKKKKKKIM 213
+ + E + K E+ KE+ EE E+E + K++ EEK +E E+ ++ KK+I
Sbjct: 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
Query: 214 RKEEN 218
EE
Sbjct: 277 ELEEK 281
Score = 27.3 bits (61), Expect = 7.3
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ + +K KE E+ EE +++ + EE K K++E E+ KK+ + E+
Sbjct: 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
Score = 27.0 bits (60), Expect = 9.5
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 170 NNVTEKKKEKEEEEEE-EKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
N + E+ KE EE+EE E+ KKK +E EK+ E+ +E+ + ++ K+E
Sbjct: 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
Score = 27.0 bits (60), Expect = 10.0
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 146 KYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKK-KKKEEEEKKKEKEKE 204
K L + R I + + +T N+ E KEKE+E EE ++ + E + +E E
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224
Query: 205 KKKKKKKIMRK 215
K +K+ K + +
Sbjct: 225 KLEKEVKELEE 235
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 27.0 bits (60), Expect = 3.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 164 EIVTKTNNVTEKK--KEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E+ + EK +EK+ EEE K+ EEEE ++E++KE
Sbjct: 36 ELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.4 bits (64), Expect = 3.2
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 145 KKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+ LS + + + +E KKK E+ E+EK+ ++ E+ ++ KE
Sbjct: 289 TEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELN 348
Query: 205 KK-KKKKKIMRKEEN 218
K ++ +K + E
Sbjct: 349 SKLEEIQKKLEDLEK 363
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.5 bits (64), Expect = 3.2
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKK--EKEKEKKKKKKKIMRKEEN 218
KKE+ EEE EE + ++ E + +KE+++ + + + + ++
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
Score = 27.7 bits (62), Expect = 5.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEE-EKKKKKKEEEEKKKEK-----EKEKKKKKKKIMRKEE 217
E+ + ++ E+ K E+E E KK++ EEE ++ E E KK+ E
Sbjct: 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
Score = 27.3 bits (61), Expect = 7.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+++EK +E EE ++ E++ + + E K+ + +I EE
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772
Score = 27.3 bits (61), Expect = 8.6
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 162 QYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKE 200
+YE V K + ++K+ K EEE + ++ +E E+KK+E
Sbjct: 980 EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 28.6 bits (64), Expect = 3.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKK----KEEEEKKKEKEKEKKKKKKKIMRKEE 217
+++ K+ E+ +KK KK + ++ KK K K+KKK KKK+ ++
Sbjct: 38 DIKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDD 92
Score = 28.3 bits (63), Expect = 4.4
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
Y+ + N +++ K K K E+ +KK K KKKKK++
Sbjct: 93 YDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSS 145
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 27.1 bits (60), Expect = 3.3
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E+ ++EEE EEE+ ++ + ++ + +++ R
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRR 50
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 28.5 bits (65), Expect = 3.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KE+EEE+E+K++ +EE + E+ KE K K
Sbjct: 477 GKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVK 510
Score = 27.4 bits (62), Expect = 7.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+E+EEEK++K++ EEE K E+ K+ K+
Sbjct: 477 GKEDEEEKEEKEEAEEEFKPLLERLKEALGDKV 509
Score = 27.4 bits (62), Expect = 7.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K+ E+E+EE+EE +++ K E+ KE +K K +
Sbjct: 477 GKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVR 513
>gnl|CDD|183743 PRK12785, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 166
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 188 KKKKKEEEEKKKEKEKEKKKKKKKIM 213
KK KK + E KKKKK I+
Sbjct: 3 KKPKKAPAAEGGEGAAPPKKKKKLII 28
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 28.3 bits (63), Expect = 3.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 156 GRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
RP G VT + E EE++E + + E KK K K+ + KK
Sbjct: 196 SRPPFGHDXEVTYYDGC-----ESEEDDEGWYIEPQDATPEGKKGKNKKGRGKK 244
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 158 PISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
P Y++ + E E K K++E+ EK+ EK
Sbjct: 123 PAYAIYKLWGLVLGPFASLPSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
KE K + K + + K K K +K +++ K
Sbjct: 85 PKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPK 118
Score = 27.3 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E E E E K+ K + K K K K K K ++K E
Sbjct: 75 EPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVE 114
Score = 26.6 bits (59), Expect = 9.6
Identities = 7/38 (18%), Positives = 20/38 (52%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
V K E + + + + K K ++ E++ ++E + + +
Sbjct: 90 VVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 28.2 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++ KE EE + +KEE E+ +E+ KE KKK K++ +
Sbjct: 567 RLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQ 611
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 28.0 bits (62), Expect = 3.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + E E E ++K+ KK+ KK K+ KKK +
Sbjct: 202 EDEMEVESPELQQKRSKKQSGSLTKKFKKNHKKKGPFR 239
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 27.6 bits (62), Expect = 3.7
Identities = 13/47 (27%), Positives = 34/47 (72%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ +K+KE ++EE++ +K+ EE +K K++E ++K++++ +K++
Sbjct: 51 LQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQA 97
Score = 26.8 bits (60), Expect = 7.0
Identities = 9/49 (18%), Positives = 31/49 (63%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ + E +++E+E +K+++K +++ E+ +K K++++ +K++
Sbjct: 42 KEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQE 90
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 27.7 bits (62), Expect = 3.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 184 EEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EE++K++ +KK + K K+ +KK + K
Sbjct: 156 EEKRKERAAAYYKKKVKLRKAWKEARKKALAKLP 189
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 28.4 bits (63), Expect = 3.8
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 88 PLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCDTYTHTIENKKY 147
P+S +R+C + LS ++YLH C PP + ++ D I + + +I + + ++ Y
Sbjct: 143 PISLSRRYCEEFLSDMAYLH-CLPPSVEPRVS-DHIPQIIDMIKQILDNGCAYRVDGDVY 200
Query: 148 LSATR-QTYGRPISGQ 162
S + YG+ +SG+
Sbjct: 201 FSVDKFPEYGK-LSGR 215
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 27.6 bits (62), Expect = 3.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 163 YEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
I N EKK E +EE ++++ + EE ++++ E K +K
Sbjct: 30 LAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEK 78
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 28.1 bits (63), Expect = 3.9
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
K N K K +E+ E + K+ ++E +++ + ++ K
Sbjct: 56 FNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 28.2 bits (63), Expect = 3.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E + + E+E +KK K+ + + ++ K +K+KK K
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKK 157
>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1,
Fe-S biogenesis. Anamorsin, subsequently named CIAPIN1
for cytokine-induced anti-apoptosis inhibitor 1, in
humans is the homologue of yeast Dre2, a conserved
soluble eukaryotic Fe-S cluster protein, that functions
in cytosolic Fe-S protein biogenesis. It is found in
both the cytoplasm and in the mitochondrial
intermembrane space (IMS). CIAPIN1 is found to be
up-regulated in hepatocellular cancer, is considered to
be a downstream effector of the receptor tyrosine
kinase-Ras signalling pathway, and is essential in mouse
definitive haematopoiesis. Dre2 has been found to
interact with the yeast reductase Tah18, forming a tight
cytosolic complex implicated in the response to high
levels of oxidative stress.
Length = 97
Score = 26.6 bits (59), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
EEEE+EKK K +++K ++ E + K
Sbjct: 34 EEEEQEKKDKSAAQQQKVEDDLAEITVEGKT 64
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 28.0 bits (63), Expect = 4.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 98 QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
QIL L Y+HS + ++H +L + + N +KI CD
Sbjct: 114 QILRGLKYIHSAN--VLHRDLKPSNLLLNTNCDLKI-CD 149
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 28.4 bits (63), Expect = 4.1
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
NN ++K+ E+++++ + + K++ +KK+E + K +EN
Sbjct: 13 NNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQEN 61
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 27.0 bits (60), Expect = 4.1
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
V ++ EEEEEE + + +E+ + + + + + KK + +
Sbjct: 49 VCGYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDE 92
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 28.0 bits (63), Expect = 4.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
K E + + EK+K+ EE++ E E + K++ +R+E
Sbjct: 19 QEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREE 64
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.0 bits (63), Expect = 4.2
Identities = 16/46 (34%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
Query: 175 KKKEKEEEEEEEKK-----KKKKEEEEKKKEKEKEKKKKKKKIMRK 215
K++EKE E EEE K ++K E EE+++ + +E+K++K++ + +
Sbjct: 141 KEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVAR 186
Score = 27.6 bits (62), Expect = 6.3
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
EKK+ K EE+EEE++ + EEE+ K +E+++++K+ + E
Sbjct: 28 EKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 26.8 bits (60), Expect = 9.3
Identities = 12/45 (26%), Positives = 32/45 (71%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
EK++ +EE EE+ ++++ E++ +++E E++ +K+ M++ E+
Sbjct: 245 EKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEH 289
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 27.9 bits (63), Expect = 4.2
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
K+ E + EE + K+ KE+ ++ + E + + ++
Sbjct: 64 KRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLL 102
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 27.2 bits (61), Expect = 4.3
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Query: 174 EKKKEKEEEEEEE----------KKKKKKEEEEKKKEKEKEKKKKKKKIM 213
+++KEKE E +E+ + K ++E K EKEKKKKKKK +
Sbjct: 38 KEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKEL 87
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.8 bits (63), Expect = 4.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 178 EKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E EEEEE+E +E + EK EK K K +K
Sbjct: 196 EDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKK 233
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 27.2 bits (61), Expect = 4.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
K+ +KEEE ++E ++ + E + E E++K +
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 27.7 bits (61), Expect = 4.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 61 VIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTC 120
V IT+ M G L +++ K N+ L WC QI ++YL ++H +L
Sbjct: 83 VQLITQLMPFGCLLDYVREHKDNIGSQYLL---NWCVQIAKGMNYLEERR--LVHRDLAA 137
Query: 121 DTIFIQHNGLVKI 133
+ ++ VKI
Sbjct: 138 RNVLVKTPQHVKI 150
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.1 bits (63), Expect = 4.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
KE+EE+E+E+K KK+ +EE + + K ++
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 27.7 bits (62), Expect = 6.3
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
K++E++E+E++ KK+ K+E + K E+
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 27.4 bits (61), Expect = 4.6
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 86 KLPLSAWKRWCSQILSALSYLHSCSPP-IIHGNLTCDTIFIQHNGLVKI 133
++ + Q+ L+ LH + HG+L I + ++ I
Sbjct: 82 EVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGI 130
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 26.8 bits (60), Expect = 4.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
+KKK+K E E +KK+KKE E++K +K
Sbjct: 42 KKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 26.0 bits (58), Expect = 8.0
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 10/65 (15%)
Query: 157 RPISGQYEIVTKTN------NVTEKKKEKEEEEEEEKKKKKKEEE---EKKKEKE-KEKK 206
R ++ +Y I T T V EK ++ + E++KKKKK E E EKK++KE E++
Sbjct: 7 RRVNQRYVIATSTKVDISGVKVPEKINDEYFKREKKKKKKKSEGEFFAEKKEKKEVSEQR 66
Query: 207 KKKKK 211
K +K
Sbjct: 67 KADQK 71
>gnl|CDD|225048 COG2137, OraA, Uncharacterized protein conserved in bacteria
[General function prediction only].
Length = 174
Score = 27.3 bits (61), Expect = 4.7
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
+ E+ E +EE+E+++ +K ++ K+E + KK+K KI R
Sbjct: 102 EIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQR 145
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 27.8 bits (62), Expect = 4.7
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIM 213
E E EE + EE E E+E K K
Sbjct: 220 AESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPK 256
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 27.8 bits (62), Expect = 4.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
KE E E + +EE E++ KKK KKK RK E+
Sbjct: 153 DNKEAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRKPES 196
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 27.8 bits (62), Expect = 4.8
Identities = 12/60 (20%), Positives = 35/60 (58%)
Query: 158 PISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
++ ++ ++ + NN+ +++ E + +++K++ + KK K K+K+K +++EE
Sbjct: 284 LLAEKFTVLNELNNLRIIEEQGETKILSKEEKQELLDLLFKKNKLTYKQKRKLLGLKEEE 343
>gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), B subunit [DNA replication,
recombination, and repair].
Length = 635
Score = 27.9 bits (63), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 187 KKKKKKE----EEEKKKEKEKEKKKKKKKIMR 214
KK KK +EE +K E+ KKK +I R
Sbjct: 538 KKGKKTFYAYDDEELEKLLERLGKKKGYEIQR 569
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 27.3 bits (61), Expect = 5.0
Identities = 9/53 (16%), Positives = 26/53 (49%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
++V K++ + K+ +++ K+ E ++ + +K +KK+ +E
Sbjct: 82 DVVPKSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKKLAEQE 134
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 27.7 bits (62), Expect = 5.0
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
K N E K++KE +EEEE + +++ + EK K ++ +K +K +EE
Sbjct: 439 LKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEEL 490
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 27.9 bits (62), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+K EK ++EE + + KKK+ EK K+ K
Sbjct: 360 KKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGGK 397
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 26.6 bits (59), Expect = 5.0
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
EK+ EK E++ K ++K+ ++EK+ E+++ + K++ KEE
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEK 75
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 27.6 bits (61), Expect = 5.1
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 63 FITEYMSSGSLKQFLKRTKRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDT 122
+T+YMS G L L++ R K + ++++ AL +LH I++ +L +
Sbjct: 73 LVTDYMSGGELFWHLQKEGR----FSEDRAKFYIAELVLALEHLHKYD--IVYRDLKPEN 126
Query: 123 IFIQHNGLVKIGCD 136
I + G + + CD
Sbjct: 127 ILLDATGHIAL-CD 139
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 27.7 bits (62), Expect = 5.1
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 38/131 (29%)
Query: 28 KIQQVFEN-------------LTQLEHPNIVKF-------HRYWTDTHNDKPRVIFITEY 67
KI F+N L L+H N++ HR + ND V + E
Sbjct: 37 KIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHR---EAFND---VYIVYEL 90
Query: 68 MSSGSLKQFLKRTKRNVKKLPLSA--WKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFI 125
M + L Q ++ ++ LS + + Q+L L Y+HS + ++H +L + +
Sbjct: 91 MDT-DLHQIIRSSQ------TLSDDHCQYFLYQLLRGLKYIHSAN--VLHRDLKPSNLLL 141
Query: 126 QHNGLVKIGCD 136
N +KI CD
Sbjct: 142 NANCDLKI-CD 151
>gnl|CDD|187742 cd09209, Lumazine_synthase-I, lumazine synthase
(6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes
the penultimate step in the biosynthesis of riboflavin
(vitamin B2); type-I. Type-I LS, also known as RibH1,
catalyzes the penultimate step in the biosynthesis of
riboflavin in plants and microorganisms. LS catalyse the
formation of 6,7-dimethyl-8-ribityllumazine by the
condensation of
5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione with
3,4-dihydroxy- 2-butanone-4-phosphate. Subsequently, the
lumazine intermediate dismutates to yield riboflavin and
5-amino-6-ribitylamino- 2,4(1H,3H)-pyrimidinedione, in a
reaction catalyzed by riboflavin synthase synthase (RS);
RS belongs to a different family of the
Lumazine-synthase-like superfamily. Riboflavin is the
precursor of flavin mononucleotide (FMN) and flavin
adenine dinucleotide (FAD) which are essential cofactors
for the catalysis of a wide range of redox reactions.
These cofactors are also involved in many other
processes involving DNA repair, circadian time-keeping,
light sensing, and bioluminescence. Riboflavin is
biosynthesized in plants, fungi and certain
microorganisms; as animals lack the necessary enzymes to
produce this vitamin, they acquire it from dietary
sources. Type II LSs are distinct from type-I LS not
only in protein sequence, but in that they exhibit
different quaternary assemblies; type-I LSs form
pentamers. The pathogen Brucella spp. encode both a
Type-I LS and a Type-II LS called RibH1 and RibH2,
respectively. RibH1/type-I LS appears to be the
functional LS in Brucella spp., whereas RibH2/type-II LS
has much lower catalytic activity as LS. The pathogen
Brucella spp. have both a type-I LS and a type-II LS
called RibH1 and RibH2, respectively. RibH1/type-I LS
appears to be a functional LS in Brucella spp., whereas
RibH2/type-II LS has much lower catalytic activity as
LS.
Length = 133
Score = 27.0 bits (61), Expect = 5.1
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 96 CSQILSALSYLHSCSPPIIHGNLTCDTI 123
++ L LS P+I G LT D
Sbjct: 82 VTRGLMRLSLETGV--PVIFGVLTTDNE 107
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 27.6 bits (62), Expect = 5.1
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 36 LTQLEHPNIVK----FHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSA 91
L ++H N++ F + D V +T M + L +K K + +
Sbjct: 68 LKHMDHENVIGLLDVFTP--ASSLEDFQDVYLVTHLMGA-DLNNIVKCQKLSDDHIQFLV 124
Query: 92 WKRWCSQILSALSYLHSCSPPIIHGNL 118
+ QIL L Y+HS IIH +L
Sbjct: 125 Y-----QILRGLKYIHSAG--IIHRDL 144
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 27.1 bits (60), Expect = 5.2
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+ +E E+ E+EE+ + +EEEE+ +E + K +KK
Sbjct: 59 EEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 27.3 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKE 200
EK+ ++E+EEEE +++ K+EE + +
Sbjct: 217 EKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 26.9 bits (59), Expect = 7.3
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 158 PISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
P Q ++++K ++ K +E++ +EE+++++ EEE K++E +
Sbjct: 195 PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
>gnl|CDD|205200 pfam13019, Telomere_Sde2, Telomere stability and silencing. Sde2
has been identified in fission yeast as an important
factor in telomere formation and maintenance. This is a
more N-terminal domain on these nuclear proteins, and is
essential for telomeric silencing and genomic stability.
Length = 163
Score = 27.1 bits (60), Expect = 5.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 179 KEEEEEEEKKKKKKEEEEKKKEKEKEK 205
E + E K E E+K+KE +++
Sbjct: 127 NEAKALAEYLAIKPEMEKKEKEARRKR 153
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 25.4 bits (56), Expect = 5.2
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKK 198
E++K ++EEE E++++ +++ E K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 27.9 bits (63), Expect = 5.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
V + E ++ EE +K K EEEE+++E+E + K++
Sbjct: 509 VAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKEL 549
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 26.0 bits (58), Expect = 5.3
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
++K ++ EEEE K KK+ + + ++E + +
Sbjct: 26 YERRDRKVQQLEEEEALKLLKKRRKVDLEEEYYRLQGL 63
Score = 25.6 bits (57), Expect = 8.1
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKK 209
+K ++ EEEE K KK + +E E + +
Sbjct: 30 DRKVQQLEEEEALKLLKKRRKVDLEE-EYYRLQGL 63
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 27.7 bits (62), Expect = 5.3
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
+ E + + EE ++++ + + EK + K +R
Sbjct: 278 DGTIEGKSDAGEEGEEEELSTDADEYEKGPPRIAPSDKYLR 318
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 27.7 bits (61), Expect = 5.3
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
N+ + + E +E+E K + +E+ E E+++K K++ ++ E+
Sbjct: 23 NLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 27.5 bits (61), Expect = 5.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKK 207
E K +K + +++ KK KKKE +E + ++E+ +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
>gnl|CDD|215581 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 protein;
Provisional.
Length = 599
Score = 27.9 bits (62), Expect = 5.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 171 NVTEKKKEKEEEEEEE----------KKKKKKEEEEKKKEKEKEKKKKKK---KIMRK 215
N+TE EE E E+ K K+ KE ++K ++ EK K KK + RK
Sbjct: 26 NLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRK 83
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 26.2 bits (58), Expect = 5.4
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
KK + + E ++ K EE + KK++ + + K+ + +
Sbjct: 40 KKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQL 80
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 27.5 bits (61), Expect = 5.5
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 24 AQEEKIQQVFENLTQLEH---PNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRT 80
A+ +Q+ L + P IV F+ ++ + E+M GSL + K+
Sbjct: 42 AKSSVRKQILRELQIMHECRSPYIVSFY----GAFLNENNICMCMEFMDCGSLDRIYKK- 96
Query: 81 KRNVKKLPLSAWKRWCSQILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
+P+ + ++ L+YL++ I+H ++ I + G +K+ CD
Sbjct: 97 ---GGPIPVEILGKIAVAVVEGLTYLYNVH-RIMHRDIKPSNILVNSRGQIKL-CD 147
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 27.6 bits (62), Expect = 5.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 174 EKKKEKE--EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E+K E+ E EK++K+ +E++ + K K KK
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKK 279
Score = 27.2 bits (61), Expect = 8.1
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKE-------KEKKKKKKKIMRK 215
++K E +E +K+++E KE+E K KK K K
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIK 285
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 27.9 bits (62), Expect = 5.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 165 IVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
I + V K + E+K K KK+ K + K KKK K
Sbjct: 728 IGNSIDAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKA 774
>gnl|CDD|182314 PRK10219, PRK10219, DNA-binding transcriptional regulator SoxS;
Provisional.
Length = 107
Score = 26.4 bits (58), Expect = 5.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 39 LEHPNIVKFHRYWTDTHNDKPRVIFITEYMSSGSLKQFLKRTKRNVKKLPLSAWKR 94
+ H I++ W D H D+P I + SG K +L+R R V L + R
Sbjct: 1 MSHQKIIQTLIAWIDEHIDQPLNIDVVA-KKSGYSKWYLQRMFRTVTHQTLGDYIR 55
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 27.3 bits (61), Expect = 6.0
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
+ + E E + E+E EKK
Sbjct: 126 CCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 27.0 bits (60), Expect = 6.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
EK +K E EE+ ++ EE ++ EK KE+ K++ + +E
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEE 47
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 26.3 bits (58), Expect = 6.1
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 186 EKKKKKKEEEEKKKEKEKEK 205
E KKK++EEE KKKE+E++K
Sbjct: 80 ENKKKQEEEERKKKEEEEKK 99
Score = 25.9 bits (57), Expect = 9.4
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 5/27 (18%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKK 198
+ E KK++EEEE +KKKEEEEKK
Sbjct: 78 LVENKKKQEEEE-----RKKKEEEEKK 99
Score = 25.5 bits (56), Expect = 9.9
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 187 KKKKKKEEEEKKKEKEKEKK 206
+ KKK+EEEE+KK++E+EKK
Sbjct: 80 ENKKKQEEEERKKKEEEEKK 99
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 27.5 bits (61), Expect = 6.2
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 187 KKKKKKEEEEKKKEKEKEKKKK 208
KKKKKK+ +EKKK+K +E K+
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|233925 TIGR02553, SipD_IpaD_SspD, type III effector protein
IpaD/SipD/SspD. These proteins are found within type
III secretion operons and have been shown to be secreted
by that system.
Length = 313
Score = 27.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 6 GVEVVWNEVQFSE-RKNFKAQEEKIQQVFENLTQ 38
G E+ W+ ++ + FKAQEE I+ + LTQ
Sbjct: 247 GTELEWDNAKYQAWQSGFKAQEENIKNTLQTLTQ 280
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 27.0 bits (60), Expect = 6.3
Identities = 7/31 (22%), Positives = 8/31 (25%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE 204
E E KKKK E +
Sbjct: 112 EADGGPTAEATTPKKKKAAAEAAAAEAAAPA 142
Score = 26.6 bits (59), Expect = 8.7
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
T T KK+K E + E +E+
Sbjct: 117 PTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 27.6 bits (61), Expect = 6.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 154 TYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKK 188
TY R I + ++ V K++++EEE E+KK
Sbjct: 216 TYRRAIQARTKVAEALTLVVMKRRKEEEEGAEKKK 250
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.1 bits (60), Expect = 6.5
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 190 KKKEEEEKKKEKEKEKKKKKKKIMRK 215
++KE+EEKKK KE ++++K++K M
Sbjct: 185 QQKEKEEKKKVKEAKRREKEEKRMAA 210
>gnl|CDD|223163 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD
subunit [Transcription].
Length = 1060
Score = 27.5 bits (62), Expect = 6.6
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 56 NDKPRVIFITEYMSSGSLKQFLKRT--------KRNVKKLPLSAW 92
N KP IT + L QF+ +T KR + L LS
Sbjct: 370 NAKPIHALITGFFGRSQLSQFMDQTNPLSELSHKRRLSALGLSRE 414
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 26.4 bits (59), Expect = 6.6
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
EI +K + K++ + E+K ++ K E + +K+
Sbjct: 69 EIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 26.9 bits (60), Expect = 6.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 176 KKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMR 214
KKE E+ EE K + ++E E K+ E E + +K++ +
Sbjct: 82 KKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALE 120
Score = 26.5 bits (59), Expect = 8.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+ E +++ E E+ KK+ ++ EE K E E+E ++ K+
Sbjct: 66 ELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA 106
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 27.3 bits (60), Expect = 7.0
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 153 QTYGRPISGQYEIV--TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEK 205
+++ P+S + E+ T+ N T+ K EE++++ +++ + K K +K
Sbjct: 87 RSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 26.9 bits (60), Expect = 7.0
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E E++++K+++ + +KK+K KE KKK+
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKKKEDA 35
Score = 26.5 bits (59), Expect = 9.1
Identities = 16/40 (40%), Positives = 31/40 (77%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
KE++E+ E++K +++K+ EE K+++ +KK KKKK +K+
Sbjct: 163 KERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 27.3 bits (61), Expect = 7.1
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 142 IENKKYLSATRQTYGRPISGQYEIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEK 201
N R+ + I + + E K EEE+E+ ++ EE + EK
Sbjct: 496 EANAALDKKFRELVEARNEAESLIYSLEKALKEIVKVSEEEKEKIEEAITDLEEALEGEK 555
Query: 202 EKEKKKKKK 210
E+ K K ++
Sbjct: 556 EEIKAKIEE 564
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 27.3 bits (61), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
KK+ K ++ EEEK K EE + K + +K
Sbjct: 14 KKRLKAKQAEEEKAAK--EEAKAAAAAAAAKGRSRK 47
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 26.1 bits (58), Expect = 7.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 178 EKEEEEEEEKKKKKKEEEE 196
++EEKK++ +EE +
Sbjct: 82 AAAAAKKEEKKEESEEESD 100
Score = 26.1 bits (58), Expect = 8.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 174 EKKKEKEEEEEEE 186
KK+EK+EE EEE
Sbjct: 86 AKKEEKKEESEEE 98
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 27.4 bits (61), Expect = 7.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 171 NVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
K+ ++ E KK+++E E K+K +E +K K +
Sbjct: 26 KPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAR 66
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 27.4 bits (61), Expect = 7.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
V + E +EE+ EE+K++ K+ ++KK+ + K KK K R
Sbjct: 183 VKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRD 226
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 27.4 bits (61), Expect = 7.5
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
E ++++EEEE+ + ++EE E +E+ + ++ +
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 27.3 bits (61), Expect = 7.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 169 TNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
T KK + + ++KKKK K E +E K KK ++K
Sbjct: 347 TATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 25.7 bits (57), Expect = 7.5
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
E E E E+++++K+E++EK ++K +E+ K+
Sbjct: 53 EPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 25.7 bits (57), Expect = 8.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEK-EKKKKKKKIMRKE 216
++ ++E + E +K+E+EK EKK+K +K + +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEE 84
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 27.3 bits (61), Expect = 7.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 166 VTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
TN +T K E ++ KK +K + +KE K K K ++ K
Sbjct: 80 YLPTNKITYLLKTTEPLNKKIKKWFEKSYLLLESKKEILKLKNIKDVLEKN 130
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 26.9 bits (60), Expect = 7.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 164 EIVTKTNNVTEKKKEK---------EEEEEEEKKKKKKEEEEKKK-EKEKEKKKKK 209
+++TK V K K + ++EEKK KEE++ K EKEK +++
Sbjct: 69 KVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 27.5 bits (61), Expect = 7.6
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKE-KKKKKKKI--MRKEEN 218
E + E EE++EE + K E +++K + KE KK+KK++I + +++N
Sbjct: 37 EDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKILEQQN 84
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 25.7 bits (57), Expect = 7.7
Identities = 14/44 (31%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 174 EKKKEKE--EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
E+K++ E E+ EE ++++KE EE+K+++++ ++++KKI +
Sbjct: 44 ERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 25.7 bits (57), Expect = 8.2
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 173 TEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
++++ KE+ EE EK +++ E E K++E+ KEK+K+ + RK+
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKK 83
>gnl|CDD|220223 pfam09405, Btz, CASC3/Barentsz eIF4AIII binding. This domain is
found on CASC3 (cancer susceptibility candidate gene 3
protein) which is also known as Barentsz (Btz). CASC3 is
a component of the EJC (exon junction complex) which is
a complex that is involved in post-transcriptional
regulation of mRNA in metazoa. The complex is formed by
the association of four proteins (eIF4AIII, Barentsz,
Mago, and Y14), mRNA, and ATP. This domain wraps around
eIF4AIII and stacks against the 5' nucleotide.
Length = 116
Score = 26.2 bits (58), Expect = 7.7
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKK 210
E +++ E + K+++E K++E EK + +
Sbjct: 3 ESERQSGRTPSAEPTEPKEDKERKRREHEKYDDEDDE 39
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 26.9 bits (59), Expect = 7.7
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 175 KKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKK 208
K K K +++E ++K++K EE E + EK+++ ++
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQ 180
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 26.9 bits (60), Expect = 7.8
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKE 216
EK KE ++ +E +K+ ++ +E +K K+ ++K+ ++M +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQ 114
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 25.4 bits (56), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 184 EEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
E + KKKK++++KK E K KK
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKA 46
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 27.1 bits (60), Expect = 8.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 175 KKKEKEEEEE---EEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
K+K KEE + E + ++E K K K KK+KK+ + E
Sbjct: 3 KRKIKEEMLQILAPEIYGPRPVKDEAKPRKIKRVKKRKKREEKDEL 48
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 26.0 bits (57), Expect = 8.3
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 180 EEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+EE + + ++E E +E+E+EK+KKKKK
Sbjct: 83 KEERRSARMARLEDERELAREEEEEKRKKKKK 114
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 26.9 bits (60), Expect = 8.3
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+ + K+ E++ EE+K KK E E++ ++ K
Sbjct: 74 DAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSG 116
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 27.3 bits (60), Expect = 8.4
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
E++ E +EE EE ++ KK+ E+ E ++EK K ++I
Sbjct: 243 EEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEI 281
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 26.4 bits (59), Expect = 8.5
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+++ E E+ E+E +K K+K +++ E ++KK+K++ +K +
Sbjct: 29 KRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQE 73
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 25.9 bits (57), Expect = 8.6
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 167 TKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+ + + K+ K ++ + E +K K K+ KK KK + E N
Sbjct: 21 KEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGN 72
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 27.0 bits (60), Expect = 8.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 98 QILSALSYLHSCSPPIIHGNLTCDTIFIQHNGLVKIGCD 136
QIL L Y+HS + ++H +L + + + +KI CD
Sbjct: 113 QILCGLKYIHSAN--VLHRDLKPGNLLVNADCELKI-CD 148
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 26.8 bits (59), Expect = 8.9
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
+ TEK E++ + K + K+E + +K + K + E
Sbjct: 209 HLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKAELSKALAALEA 262
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 26.9 bits (59), Expect = 9.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 164 EIVTKTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEE 217
KT KKK K ++ E+ K +K ++ + E+K+ ++ R EE
Sbjct: 80 PAPVKTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQRNEE 133
>gnl|CDD|223512 COG0435, ECM4, Predicted glutathione S-transferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 324
Score = 26.9 bits (60), Expect = 9.0
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 23 KAQEEKIQQVFENLTQLEHPNIVKFHRY 50
+A EE ++++FE L +LE I+ RY
Sbjct: 201 EAYEEAVKKLFEALDKLE--QILSERRY 226
>gnl|CDD|179867 PRK04598, tatA, twin arginine translocase protein A; Provisional.
Length = 81
Score = 25.6 bits (56), Expect = 9.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 176 KKEKEEEEEEEKKKKK-----KEEEEKKKEKEKEKKKKKKK 211
KK EEE + KK K E+ K E EKKK K++
Sbjct: 40 KKAMSEEESAKANKKDADFEPKNLEQAKTEAAAEKKKDKEQ 80
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 26.2 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 181 EEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKI 212
+++ EE K K +++EKK E EK + +K+ I
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETI 32
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 26.6 bits (59), Expect = 9.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 174 EKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKK 211
+K + ++ EE +++ K EEEE + +E + K
Sbjct: 25 IEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSA 62
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 25.5 bits (56), Expect = 9.5
Identities = 11/49 (22%), Positives = 30/49 (61%)
Query: 170 NNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
+N+ ++KK+K+ + + K K+ ++K K+K++ + ++ R+ E+
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTED 67
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 26.9 bits (60), Expect = 9.6
Identities = 6/19 (31%), Positives = 6/19 (31%)
Query: 168 KTNNVTEKKKEKEEEEEEE 186
EEEEEE
Sbjct: 282 AAAAAAAAAAAPAEEEEEE 300
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 26.6 bits (59), Expect = 9.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 168 KTNNVTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRK 215
K +KK ++ +E + KE ++K K K++KKK++ K
Sbjct: 97 KEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVTK 144
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 26.6 bits (59), Expect = 9.7
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 178 EKEEEEEEEKKKKKKEEEE-----KKKEKEKEKKKKKKKIM 213
+K +EE+EE+ +K++EEE KK E K++ +++
Sbjct: 111 DKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVL 151
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 26.5 bits (59), Expect = 9.9
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 172 VTEKKKEKEEEEEEEKKKKKKEEEEKKKEKEKEKKKKKKKIMRKEEN 218
++ + EEE EE +++K++EE + +E + KKK+ + +KE+
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 26.4 bits (58), Expect = 10.0
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 177 KEKEEEEEEEKKKKKKEEEEKKKEKEKEKK 206
K EEE+E+KK KEE+E KK++ +++
Sbjct: 90 KNHLEEEKEKKKNLNKEEKEAKKKERAKRE 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.365
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,919,835
Number of extensions: 1048264
Number of successful extensions: 20702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13040
Number of HSP's successfully gapped: 2979
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.6 bits)