BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2380
(733 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6T2G6|RSMH_JANMA Ribosomal RNA small subunit methyltransferase H
OS=Janthinobacterium sp. (strain Marseille) GN=rsmH PE=3
SV=1
Length = 322
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 150/279 (53%), Positives = 202/279 (72%), Gaps = 1/279 (0%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L + ER NG+Y+D TFG+GGHS KIL++LG RL+A DKDT++++
Sbjct: 14 VLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLLAFDKDTQAIANAAT 73
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D RF I H+ F L L IK++DG+L DLGISS Q+++ RGFSF DGPLDMR
Sbjct: 74 IDDQRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDATRGFSFRADGPLDMR 133
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEII 406
MD TRG+SA++WLA TE I+KVI++YGEERFA +IAK IV R++ PI+ T+QL EI+
Sbjct: 134 MDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRAVEPISSTRQLAEIV 193
Query: 407 LKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDR 466
++++ ++ K+PATRTFQAIRI+INQEL+ L + L ++ L GR+VVISFHSLEDR
Sbjct: 194 ARTVKTREKGKDPATRTFQAIRIFINQELEELEVVLNEAYRYLAPHGRLVVISFHSLEDR 253
Query: 467 IVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
IVK F+ +P DRRLPI L +P+MK L+R KP
Sbjct: 254 IVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSRVKP 292
>sp|A4G8U6|RSMH_HERAR Ribosomal RNA small subunit methyltransferase H OS=Herminiimonas
arsenicoxydans GN=rsmH PE=3 SV=1
Length = 321
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 204/279 (73%), Gaps = 1/279 (0%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L EA++ L ++ ER NG+Y+D TFG+GGHS IL+RLG+ G L+A DKDT++++
Sbjct: 14 VLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIANAAT 73
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D RF+I+H+ F L L + I +++G+L DLGISS Q+++ RGFSF DGPLDMR
Sbjct: 74 IEDKRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRADGPLDMR 133
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEII 406
MD TRGISA++WLA TE I+KVI++YGEERFA +IAK IV R++ PI+ T+QL EI+
Sbjct: 134 MDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTRQLAEIV 193
Query: 407 LKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDR 466
++++ ++ K+PATRTFQAIRI+INQEL+ L + L ++ L GR+VVISFHSLEDR
Sbjct: 194 ARAVKTREKGKDPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVISFHSLEDR 253
Query: 467 IVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
IVK F+ +P DRRLPI L +P+MK +AR KP
Sbjct: 254 IVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIARIKP 292
>sp|C6BEJ1|RSMH_RALP1 Ribosomal RNA small subunit methyltransferase H OS=Ralstonia
pickettii (strain 12D) GN=rsmH PE=3 SV=1
Length = 319
Score = 286 bits (732), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 139/290 (47%), Positives = 197/290 (67%), Gaps = 14/290 (4%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +GIYID TFG+GGHS +ILERLG GRL+A DKD +++
Sbjct: 14 VLLDEAVDALIW---RDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAGT 70
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
+ D+RF+I H+ F ++ L I+++ G+L DLGISS QI+ RGFSF +DGPLDMR
Sbjct: 71 VEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERGFSFRMDGPLDMR 130
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSIT----PITRTKQL 402
MD TRGI+A++WLA A E +I +VI+DYGEERFA +IAK IV R + P+ RT +L
Sbjct: 131 MDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRTSEL 190
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
++ ++++ ++ ++PATRTFQA+RI++NQEL +L LK F +L GR+VVISFHS
Sbjct: 191 AALVAQAVKTREKGQDPATRTFQALRIHVNQELADLETGLKAAFDRLEQGGRLVVISFHS 250
Query: 463 LEDRIVKNFINF-----NTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P + RR P+ + L P+++ L R KP +
Sbjct: 251 LEDRIVKRFMQALARPEQSAAPEL-RRAPLRAHELPAPQLRLLGRVKPSE 299
>sp|B2UCY5|RSMH_RALPJ Ribosomal RNA small subunit methyltransferase H OS=Ralstonia
pickettii (strain 12J) GN=rsmH PE=3 SV=1
Length = 319
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/290 (47%), Positives = 197/290 (67%), Gaps = 14/290 (4%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +GIYID TFG+GGHS +ILERLG GRL+A DKD +++
Sbjct: 14 VLLDEAVDALIW---RDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAGT 70
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
+ D+RF+I H+ F ++ L ++++ G+L DLGISS QI+ RGFSF +DGPLDMR
Sbjct: 71 VEDARFAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGARGFSFRMDGPLDMR 130
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSIT----PITRTKQL 402
MD TRGI+A++WLA A E +I +VI+DYGEERFA +IAK IV R + P+ RT +L
Sbjct: 131 MDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRTSEL 190
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
++ ++++ ++ ++PATRTFQA+RI++NQEL +L LK F +L GR+VVISFHS
Sbjct: 191 AALVAQAVKTREKGQDPATRTFQALRIHVNQELADLETGLKAAFDRLEQGGRLVVISFHS 250
Query: 463 LEDRIVKNFINF-----NTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P + RR P+ + L P+++ L R KP +
Sbjct: 251 LEDRIVKRFMQALARPEQSAAPEL-RRAPLRAHELPAPQLRLLGRVKPSE 299
>sp|Q8XVH9|RSMH_RALSO Ribosomal RNA small subunit methyltransferase H OS=Ralstonia
solanacearum (strain GMI1000) GN=rsmH PE=3 SV=1
Length = 319
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/275 (49%), Positives = 188/275 (68%), Gaps = 11/275 (4%)
Query: 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE 301
R +GIYID TFG+GGHS ILERLG GRLIA DKD +++ + D+RF+I H+ F
Sbjct: 26 RDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAGTVEDARFAIEHDSFAH 85
Query: 302 LDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLAN 361
LD L I ++ G+L DLGISS QI+ RGFSF +DGPLDMRMD TRGI+A++WLA
Sbjct: 86 LDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPLDMRMDTTRGITAAQWLAE 145
Query: 362 ATEFNIKKVIQDYGEERFAKKIAKEIVHYRSIT----PITRTKQLVEIILKSIRGNKRYK 417
A E +I +VI+DYGEERFA +IAK IV R + P+ RT +L ++ ++++ ++ +
Sbjct: 146 ADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRTSELAALVAQAVKTREKGQ 205
Query: 418 NPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF--- 474
+PATRTFQA+RI++NQEL +L LK F++L GR+VVISFHSLEDRIVK F+
Sbjct: 206 DPATRTFQALRIHVNQELADLETGLKSAFERLEQGGRLVVISFHSLEDRIVKRFMQALAR 265
Query: 475 --NTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
+ P + RR P+ + L P+++ L R +P +
Sbjct: 266 PEQSAAPEM-RRAPLRAHELPAPQLRLLGRVRPSE 299
>sp|Q13TY4|RSMH_BURXL Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
xenovorans (strain LB400) GN=rsmH PE=3 SV=1
Length = 317
Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 185/281 (65%), Gaps = 8/281 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L EA+ L R +G+Y+D TFG+GGHS +LE+LG+ GRLIA DKD +++ +
Sbjct: 14 VLLEEAVQALVT---RADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQQ 70
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
ITD RF I+H F L + + + ++ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 71 ITDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPLDMR 130
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA+ WLA AT + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 131 MDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVSTGEL 190
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI+INQEL L + L+ L GR+VVISFHS
Sbjct: 191 AQIVANVVKTREKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVISFHS 250
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARC 502
LEDRIVK F+ + P +DRRLPI L P +K + R
Sbjct: 251 LEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGRV 291
>sp|B1YSR6|RSMH_BURA4 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
ambifaria (strain MC40-6) GN=rsmH PE=3 SV=1
Length = 313
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/285 (47%), Positives = 189/285 (66%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+ L R +GIY+D TFG+GGHS +L RL + GRLIA DKD ++ +
Sbjct: 10 VLLDEAVESLVT---RPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQR 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L I+K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K ++R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISRQFPSE 291
>sp|B2JHG8|RSMH_BURP8 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=rsmH PE=3 SV=1
Length = 317
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/281 (48%), Positives = 185/281 (65%), Gaps = 8/281 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L EA+N L R++GIYID TFG+GGHS +L +LG+ GRLIA DKD +++ +
Sbjct: 14 VLLEEAVNALVT---RVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFDKDPLAIATAQQ 70
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
+ D RF I+H F L + + + ++ G+L DLG+SS Q ++ RGFSF DGPLDMR
Sbjct: 71 VADPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPERGFSFRADGPLDMR 130
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA+ WLA AT + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 131 MDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVSTGEL 190
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI+INQEL L + L+ L GR+VVISFHS
Sbjct: 191 AQIVANVVKTREKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVISFHS 250
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARC 502
LEDRIVK F+ ++ P +DRRLPI L P +K L R
Sbjct: 251 LEDRIVKRFMQTHSSAPAVDRRLPIRAVDLPSPPLKLLGRV 291
>sp|A9AJ24|RSMH_BURM1 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=rsmH PE=3 SV=1
Length = 313
Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 187/285 (65%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+ L R +GIY+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVESLVT---RPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQG 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L I+K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IGDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K + R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGRQFPSE 291
>sp|A4JB86|RSMH_BURVG Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=rsmH PE=3 SV=1
Length = 313
Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 189/285 (66%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +GIY+D TFG+GGHS +L RL GRLIA DKD ++ +
Sbjct: 10 VLLDEAVDSLVT---RPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQR 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L ++K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K ++R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISRQFPSE 291
>sp|Q0BIK9|RSMH_BURCM Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=rsmH PE=3 SV=1
Length = 313
Score = 281 bits (718), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/285 (47%), Positives = 189/285 (66%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+ L R +GIY+D TFG+GGHS +L RL + GRLIA DKD ++ +
Sbjct: 10 VLLDEAVESLVT---RPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETAQR 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L I+K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K ++R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISRQFPSE 291
>sp|Q7N139|RSMH_PHOLL Ribosomal RNA small subunit methyltransferase H OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rsmH PE=3
SV=1
Length = 314
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 199/286 (69%), Gaps = 8/286 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R NGIYID TFG+GGHS IL +LG +GRLIAID+D +++ +
Sbjct: 11 VLLDEAVNGLNI---RENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQAIEVAKA 67
Query: 287 ITDSRFSIIHNCFTELDIILKKYN-IKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
ITD RFSI+H F++L +K I KIDG+L DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 68 ITDPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDM 127
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL NAT +I V++ +GEERFAK+IA+ IV PITRTK L ++
Sbjct: 128 RMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEPITRTKALADL 187
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
I ++ +++K+PAT++FQAIRIYIN EL+ + AL+ + L +GR+ VISFHSLED
Sbjct: 188 IAQASPIKEKHKHPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGRLSVISFHSLED 247
Query: 466 RIVKNFINFNTKIPHIDRRLPIYNYLFEPK----MKFLARCKPKKK 507
RIVK FI N++ P + LP+ + + +K + + KP ++
Sbjct: 248 RIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGKMKPSEE 293
>sp|A0K478|RSMH_BURCH Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
cenocepacia (strain HI2424) GN=rsmH PE=3 SV=1
Length = 313
Score = 279 bits (713), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 187/285 (65%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+ L R +G+Y+D TFG+GGHS +L RL GRLIA DKD ++
Sbjct: 10 VLLDEAVESLVT---RPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQG 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L ++K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K ++R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISRQFPSE 291
>sp|B1JUW4|RSMH_BURCC Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
cenocepacia (strain MC0-3) GN=rsmH PE=3 SV=1
Length = 313
Score = 279 bits (713), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 187/285 (65%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+ L R +G+Y+D TFG+GGHS +L RL GRLIA DKD ++
Sbjct: 10 VLLDEAVESLVT---RPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQG 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L ++K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K ++R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISRQFPSE 291
>sp|Q39JX8|RSMH_BURS3 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia sp.
(strain 383) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (712), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 187/285 (65%), Gaps = 8/285 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+ L R +GIY+D TFG+GGHS +L RL GRLIA DKD ++
Sbjct: 10 VLLDEAVESLVT---RPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQG 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RFSI+H+ F + L ++K+ G+L DLG+SS Q+++ RGFSF DGPLDMR
Sbjct: 67 IEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKPKK 506
LEDRIVK F+ + P +DRRLPI L P +K ++R P +
Sbjct: 247 LEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISRQFPSE 291
>sp|A3NZM3|RSMH_BURP0 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
pseudomallei (strain 1106a) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGRMFP 289
>sp|Q8FL68|RSMH_ECOL6 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmH PE=3
SV=1
Length = 313
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + + I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV + P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|A3NDX2|RSMH_BURP6 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
pseudomallei (strain 668) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGRMFP 289
>sp|Q3JND0|RSMH_BURP1 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
pseudomallei (strain 1710b) GN=rsmH PE=3 SV=2
Length = 313
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGRMFP 289
>sp|A1V0S6|RSMH_BURMS Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
mallei (strain SAVP1) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGRMFP 289
>sp|Q62GR9|RSMH_BURMA Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
mallei (strain ATCC 23344) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGRMFP 289
>sp|A2S5V3|RSMH_BURM9 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
mallei (strain NCTC 10229) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGRMFP 289
>sp|A3MR55|RSMH_BURM7 Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
mallei (strain NCTC 10247) GN=rsmH PE=3 SV=1
Length = 313
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 186/283 (65%), Gaps = 8/283 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA++ L R +G+Y+D TFG+GGHS +L RLG GRLIA DKD ++
Sbjct: 10 VLLDEAVDALVT---RPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D+RF I+H+ F + L + ++ G+L DLG+SS Q+++ RGFSF +GPLDMR
Sbjct: 67 IEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPLDMR 126
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA++WLA A+ + +VI+DYGEERFA +IAK IV R+ + P+ T +L
Sbjct: 127 MDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDSTGEL 186
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI++NQEL +L + L+ L GR+VVISFHS
Sbjct: 187 AQIVGHVVKTREKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVISFHS 246
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARCKP 504
LEDRIVK F+ + P +DRRLPI L P +K L R P
Sbjct: 247 LEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGRMFP 289
>sp|B2SYY3|RSMH_BURPP Ribosomal RNA small subunit methyltransferase H OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=rsmH PE=3 SV=1
Length = 317
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 183/281 (65%), Gaps = 8/281 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L EA+ L R +G+Y+D TFG+GGHS +LE+L + GRLIA DKD +++ +
Sbjct: 14 VLLEEAVQALVT---RADGVYVDGTFGRGGHSRLVLEKLAESGRLIAFDKDPLAIATAQQ 70
Query: 287 ITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMR 346
I D RF I+H F L + + + ++ G+L DLGISS QI++ RGFSF DGPLDMR
Sbjct: 71 IADPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPERGFSFRADGPLDMR 130
Query: 347 MDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS----ITPITRTKQL 402
MD TRG SA+ WLA AT + +VI+DYGEERFA +IAK +V R+ + P+ T +L
Sbjct: 131 MDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVSTGEL 190
Query: 403 VEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462
+I+ ++ ++ K+PATRTFQAIRI+INQEL L + L+ L GR+VVISFHS
Sbjct: 191 AQIVANVVKTREKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVISFHS 250
Query: 463 LEDRIVKNFINFNTKIPHIDRRLPIYNY-LFEPKMKFLARC 502
LEDRIVK F+ + P +DRRLPI L P +K + R
Sbjct: 251 LEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGRV 291
>sp|B7NHI8|RSMH_ECO7I Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 186/262 (70%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL + G++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQFGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L D + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B5BLG4|RSMH_SALPK Ribosomal RNA small subunit methyltransferase H OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 195/286 (68%), Gaps = 8/286 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQA 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I+D RFSIIH F+ L D + ++ KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 ISDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ +GEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPIYNYLFEP----KMKFLARCKPKKK 507
RIVK F+ ++ P + LP+ + +++ L + P +K
Sbjct: 247 RIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEK 292
>sp|Q5PDH4|RSMH_SALPA Ribosomal RNA small subunit methyltransferase H OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmH PE=3
SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 195/286 (68%), Gaps = 8/286 (2%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQA 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I+D RFSIIH F+ L D + ++ KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 ISDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ +GEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPIYNYLFEP----KMKFLARCKPKKK 507
RIVK F+ ++ P + LP+ + +++ L + P +K
Sbjct: 247 RIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGKLMPGEK 292
>sp|Q326F3|RSMH_SHIBS Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B2U287|RSMH_SHIB3 Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmH PE=3
SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B7LWH0|RSMH_ESCF3 Ribosomal RNA small subunit methyltransferase H OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|Q1RGB3|RSMH_ECOUT Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B1LG19|RSMH_ECOSM Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B6HZ59|RSMH_ECOSE Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain SE11) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B7N7V5|RSMH_ECOLU Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|P60390|RSMH_ECOLI Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain K12) GN=rsmH PE=1 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B1IR96|RSMH_ECOLC Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|Q0TLQ7|RSMH_ECOL5 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|A1A7C7|RSMH_ECOK1 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O1:K1 / APEC GN=rsmH PE=3 SV=2
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|A7ZW34|RSMH_ECOHS Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O9:H4 (strain HS) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B1XC59|RSMH_ECODH Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain K12 / DH10B) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|C4ZQ04|RSMH_ECOBW Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|C6UM45|RSMH_ECOBR Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain B / REL606) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|C5W331|RSMH_ECOBD Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain B / BL21-DE3) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B7M125|RSMH_ECO8A Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O8 (strain IAI1) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B5YZB8|RSMH_ECO5E Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|P60391|RSMH_ECO57 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O157:H7 GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B7LFV2|RSMH_ECO55 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|B7MAK5|RSMH_ECO45 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|A7ZHH3|RSMH_ECO24 Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmH PE=3 SV=1
Length = 313
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL +LG++GRL+AID+D +++++
Sbjct: 10 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKT 66
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L + + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 67 IDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 126
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ YGEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 127 RMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 186
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 187 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLED 246
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ N++ P + LP+
Sbjct: 247 RIVKRFMRENSRGPQVPAGLPM 268
>sp|A8ALL4|RSMH_CITK8 Ribosomal RNA small subunit methyltransferase H OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmH PE=3 SV=1
Length = 314
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/262 (51%), Positives = 185/262 (70%), Gaps = 4/262 (1%)
Query: 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286
+ L+EA+N LNI R +GIYID TFG+GGHS IL RLG++GRL+AID+D ++++
Sbjct: 11 VLLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQAIAEAQA 67
Query: 287 ITDSRFSIIHNCFTEL-DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDM 345
I D RFSIIH F+ L D + ++ I KIDGIL DLG+SS Q+++ RGFSF+ DGPLDM
Sbjct: 68 INDPRFSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 127
Query: 346 RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEI 405
RMD TRG SA++WL A E +I V++ +GEERFAK+IA+ IV P+TRTK+L E+
Sbjct: 128 RMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKELAEV 187
Query: 406 ILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465
+ + ++K+PATRTFQA+RI++N EL+ + ALK L GR+ +ISFHSLED
Sbjct: 188 VAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFHSLED 247
Query: 466 RIVKNFINFNTKIPHIDRRLPI 487
RIVK F+ ++ P + LP+
Sbjct: 248 RIVKRFMREQSRGPQVPAGLPM 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,503,787
Number of Sequences: 539616
Number of extensions: 11035003
Number of successful extensions: 39978
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 37205
Number of HSP's gapped (non-prelim): 990
length of query: 733
length of database: 191,569,459
effective HSP length: 125
effective length of query: 608
effective length of database: 124,117,459
effective search space: 75463415072
effective search space used: 75463415072
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)