Query psy2380
Match_columns 733
No_of_seqs 508 out of 3644
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:33:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0275 Predicted S-adenosylme 100.0 7E-101 2E-105 786.8 26.9 278 225-506 8-292 (314)
2 PF01795 Methyltransf_5: MraW 100.0 3.5E-97 8E-102 778.1 20.2 278 225-506 5-290 (310)
3 TIGR00006 S-adenosyl-methyltra 100.0 6.4E-94 1.4E-98 755.1 29.3 274 225-506 5-285 (305)
4 PRK00050 16S rRNA m(4)C1402 me 100.0 6.2E-89 1.3E-93 717.4 29.4 268 225-506 4-275 (296)
5 KOG2782|consensus 100.0 9.3E-69 2E-73 519.0 10.0 247 225-475 28-284 (303)
6 TIGR00486 YbgI_SA1388 dinuclea 100.0 5.9E-56 1.3E-60 461.7 24.0 219 500-732 11-231 (249)
7 PF01784 NIF3: NIF3 (NGG1p int 100.0 3.8E-56 8.3E-61 461.4 16.7 218 501-732 8-234 (241)
8 PRK10799 metal-binding protein 100.0 3.5E-54 7.7E-59 447.9 23.4 218 505-732 11-229 (247)
9 COG0327 Uncharacterized conser 100.0 1.9E-49 4.2E-54 411.0 22.7 218 506-732 12-232 (250)
10 KOG4131|consensus 100.0 2E-39 4.3E-44 317.9 17.6 203 514-730 27-247 (272)
11 COG0728 MviN Uncharacterized m 99.9 3.6E-24 7.8E-29 240.8 27.3 223 1-227 194-510 (518)
12 PF03023 MVIN: MviN-like prote 99.9 1.4E-20 3.1E-25 213.1 24.8 187 1-191 160-438 (451)
13 TIGR01695 mviN integral membra 99.8 3.3E-18 7.1E-23 195.7 28.9 224 2-233 186-501 (502)
14 PRK10459 colanic acid exporter 99.7 2.1E-16 4.5E-21 180.8 25.2 221 2-238 173-481 (492)
15 TIGR02900 spore_V_B stage V sp 99.4 2E-11 4.4E-16 139.2 24.1 206 3-219 184-487 (488)
16 COG2244 RfbX Membrane protein 99.0 7.3E-08 1.6E-12 110.0 24.3 118 2-124 175-294 (480)
17 PRK15099 O-antigen translocase 98.8 1.2E-07 2.5E-12 106.5 18.4 117 3-124 177-294 (416)
18 TIGR00797 matE putative efflux 98.8 2.5E-07 5.5E-12 100.4 17.9 122 2-125 176-297 (342)
19 PF14667 Polysacc_synt_C: Poly 98.6 2.2E-06 4.8E-11 81.5 17.4 96 126-225 50-145 (146)
20 COG0534 NorM Na+-driven multid 98.6 5.4E-06 1.2E-10 94.5 22.1 142 40-182 14-256 (455)
21 PRK01766 multidrug efflux prot 98.5 8.4E-06 1.8E-10 92.7 21.9 85 39-124 8-92 (456)
22 PF06962 rRNA_methylase: Putat 98.5 7.3E-08 1.6E-12 91.0 3.4 52 270-324 1-57 (140)
23 PRK09575 vmrA multidrug efflux 98.4 1.8E-05 3.8E-10 90.2 21.7 84 40-124 9-93 (453)
24 PRK00187 multidrug efflux prot 98.4 2.5E-05 5.3E-10 89.3 22.1 85 39-124 6-90 (464)
25 PRK10189 MATE family multidrug 98.4 5.7E-05 1.2E-09 86.7 23.8 84 40-124 26-109 (478)
26 PRK01766 multidrug efflux prot 98.2 3.1E-05 6.7E-10 88.0 16.1 122 2-124 197-319 (456)
27 PRK10367 DNA-damage-inducible 98.2 0.00018 3.9E-09 81.8 21.8 84 40-124 6-90 (441)
28 TIGR00797 matE putative efflux 98.0 0.00011 2.3E-09 79.9 15.8 73 51-124 1-73 (342)
29 TIGR00446 nop2p NOL1/NOP2/sun 98.0 0.00021 4.5E-09 75.7 15.7 78 242-324 70-151 (264)
30 PF01943 Polysacc_synt: Polysa 97.9 8.1E-05 1.7E-09 77.3 12.2 102 3-111 171-273 (273)
31 PF13659 Methyltransf_26: Meth 97.9 5E-05 1.1E-09 69.3 8.7 77 244-325 1-82 (117)
32 PF05175 MTS: Methyltransferas 97.7 0.00015 3.2E-09 71.5 9.8 123 242-475 30-157 (170)
33 PRK09575 vmrA multidrug efflux 97.7 0.00078 1.7E-08 76.8 17.0 122 2-125 194-316 (453)
34 COG0534 NorM Na+-driven multid 97.7 0.0064 1.4E-07 69.5 22.7 121 2-125 200-322 (455)
35 PRK00187 multidrug efflux prot 97.7 0.01 2.2E-07 68.0 24.4 123 2-125 194-317 (464)
36 PF09445 Methyltransf_15: RNA 97.6 6E-05 1.3E-09 73.5 4.9 128 246-411 2-137 (163)
37 PF13440 Polysacc_synt_3: Poly 97.6 0.00064 1.4E-08 70.0 12.5 67 44-110 184-251 (251)
38 TIGR01934 MenG_MenH_UbiE ubiqu 97.6 0.00099 2.1E-08 67.7 13.2 83 230-320 29-113 (223)
39 TIGR03533 L3_gln_methyl protei 97.5 0.0015 3.3E-08 69.9 14.6 72 242-320 120-196 (284)
40 PRK11805 N5-glutamine S-adenos 97.4 0.0028 6.1E-08 68.6 14.6 69 245-320 135-208 (307)
41 TIGR01177 conserved hypothetic 97.4 0.0016 3.4E-08 71.3 12.2 73 242-322 181-257 (329)
42 PF12847 Methyltransf_18: Meth 97.3 0.0014 3.1E-08 59.1 9.2 73 243-321 1-78 (112)
43 PRK00107 gidB 16S rRNA methylt 97.3 0.0016 3.4E-08 65.4 10.2 70 243-319 45-118 (187)
44 TIGR00080 pimt protein-L-isoas 97.2 0.0011 2.3E-08 68.0 8.7 90 224-321 61-154 (215)
45 PRK10189 MATE family multidrug 97.2 0.1 2.2E-06 60.0 25.4 123 2-125 216-340 (478)
46 PRK13944 protein-L-isoaspartat 97.2 0.0015 3.3E-08 66.3 9.3 91 225-323 57-152 (205)
47 PRK14903 16S rRNA methyltransf 97.1 0.0017 3.6E-08 73.6 9.3 81 242-326 236-320 (431)
48 PRK10367 DNA-damage-inducible 97.1 0.092 2E-06 59.8 23.3 120 2-125 191-313 (441)
49 PRK14902 16S rRNA methyltransf 97.1 0.0016 3.5E-08 74.1 8.9 79 242-324 249-331 (444)
50 TIGR02752 MenG_heptapren 2-hep 97.1 0.0023 5.1E-08 65.9 9.3 86 230-323 35-124 (231)
51 PRK14968 putative methyltransf 97.0 0.0093 2E-07 59.0 13.0 73 242-323 22-100 (188)
52 PRK13942 protein-L-isoaspartat 97.0 0.0036 7.9E-08 64.0 10.0 92 223-322 59-154 (212)
53 PF13847 Methyltransf_31: Meth 97.0 0.0018 3.9E-08 62.3 7.0 76 242-321 2-81 (152)
54 PRK11188 rrmJ 23S rRNA methylt 96.9 0.0047 1E-07 63.1 9.7 84 230-322 40-126 (209)
55 TIGR02469 CbiT precorrin-6Y C5 96.9 0.0042 9.1E-08 56.8 8.6 82 232-321 11-96 (124)
56 PRK00377 cbiT cobalt-precorrin 96.9 0.0036 7.8E-08 63.2 8.4 76 242-321 39-119 (198)
57 TIGR02900 spore_V_B stage V sp 96.9 0.034 7.5E-07 63.4 17.4 79 46-124 2-81 (488)
58 TIGR03534 RF_mod_PrmC protein- 96.9 0.02 4.3E-07 59.5 14.2 75 243-324 87-165 (251)
59 TIGR00138 gidB 16S rRNA methyl 96.8 0.013 2.8E-07 58.5 12.1 71 243-320 42-116 (181)
60 COG2242 CobL Precorrin-6B meth 96.8 0.008 1.7E-07 59.6 9.6 82 232-322 26-111 (187)
61 cd02440 AdoMet_MTases S-adenos 96.7 0.014 3E-07 50.2 10.0 74 247-326 2-79 (107)
62 COG2226 UbiE Methylase involve 96.7 0.0043 9.2E-08 64.4 7.6 88 229-325 40-131 (238)
63 PLN02233 ubiquinone biosynthes 96.7 0.0093 2E-07 63.0 10.0 85 242-333 72-163 (261)
64 PRK00121 trmB tRNA (guanine-N( 96.6 0.0067 1.5E-07 61.5 7.8 86 228-321 29-119 (202)
65 PF01209 Ubie_methyltran: ubiE 96.5 0.0049 1.1E-07 64.0 6.6 132 230-478 37-172 (233)
66 PF13649 Methyltransf_25: Meth 96.4 0.0086 1.9E-07 53.3 6.8 68 247-319 1-73 (101)
67 PRK14901 16S rRNA methyltransf 96.4 0.0088 1.9E-07 67.9 8.4 88 234-325 246-337 (434)
68 TIGR01695 mviN integral membra 96.4 0.66 1.4E-05 53.1 23.7 70 45-114 2-74 (502)
69 PTZ00338 dimethyladenosine tra 96.4 0.01 2.2E-07 63.8 8.1 89 223-324 19-112 (294)
70 PRK13943 protein-L-isoaspartat 96.3 0.011 2.4E-07 64.3 8.2 94 224-325 64-161 (322)
71 TIGR00537 hemK_rel_arch HemK-r 96.3 0.062 1.4E-06 53.1 12.8 71 243-323 19-92 (179)
72 PRK07402 precorrin-6B methylas 96.3 0.016 3.5E-07 58.3 8.7 58 242-300 39-100 (196)
73 PRK03612 spermidine synthase; 96.3 3.4 7.3E-05 48.2 30.7 74 243-321 297-381 (521)
74 PRK06202 hypothetical protein; 96.3 0.026 5.5E-07 58.4 10.2 82 243-331 60-145 (232)
75 PRK00517 prmA ribosomal protei 96.2 0.047 1E-06 57.3 12.1 42 242-285 118-159 (250)
76 PF08704 GCD14: tRNA methyltra 96.2 0.025 5.4E-07 59.1 9.7 97 229-331 29-131 (247)
77 TIGR00406 prmA ribosomal prote 96.2 0.069 1.5E-06 57.3 13.3 71 242-321 158-233 (288)
78 PRK08287 cobalt-precorrin-6Y C 96.2 0.022 4.9E-07 56.8 8.9 76 233-319 24-103 (187)
79 PRK10901 16S rRNA methyltransf 96.2 0.017 3.7E-07 65.4 9.0 86 233-325 237-325 (427)
80 smart00650 rADc Ribosomal RNA 96.1 0.024 5.2E-07 55.7 8.6 83 230-323 3-87 (169)
81 PRK00274 ksgA 16S ribosomal RN 96.1 0.023 5.1E-07 60.4 8.9 88 225-323 27-115 (272)
82 PRK00216 ubiE ubiquinone/menaq 96.0 0.038 8.2E-07 56.7 10.0 86 229-322 40-130 (239)
83 PRK14904 16S rRNA methyltransf 96.0 0.025 5.3E-07 64.5 9.2 82 234-324 244-329 (445)
84 PRK08317 hypothetical protein; 96.0 0.037 8E-07 56.6 9.6 86 230-323 9-97 (241)
85 TIGR00563 rsmB ribosomal RNA s 95.9 0.022 4.7E-07 64.6 8.2 87 233-326 231-322 (426)
86 PLN02781 Probable caffeoyl-CoA 95.9 0.039 8.5E-07 57.4 9.3 80 242-321 67-152 (234)
87 TIGR00438 rrmJ cell division p 95.8 0.041 8.9E-07 54.9 9.0 73 242-321 31-106 (188)
88 PRK13168 rumA 23S rRNA m(5)U19 95.7 0.034 7.3E-07 63.4 9.0 87 227-322 284-376 (443)
89 PTZ00146 fibrillarin; Provisio 95.7 0.037 8.1E-07 59.1 8.3 76 242-321 131-210 (293)
90 PRK14896 ksgA 16S ribosomal RN 95.6 0.048 1.1E-06 57.5 9.1 88 223-323 12-101 (258)
91 KOG2730|consensus 95.6 0.017 3.8E-07 58.3 5.2 61 245-308 96-161 (263)
92 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.6 0.046 9.9E-07 58.5 8.7 82 242-326 84-169 (283)
93 PRK11036 putative S-adenosyl-L 95.6 0.032 7E-07 58.5 7.5 79 230-319 35-118 (255)
94 COG4123 Predicted O-methyltran 95.6 0.022 4.9E-07 59.3 6.0 74 243-320 44-122 (248)
95 PRK14121 tRNA (guanine-N(7)-)- 95.5 0.034 7.3E-07 61.8 7.7 84 230-320 112-199 (390)
96 TIGR00740 methyltransferase, p 95.5 0.057 1.2E-06 56.1 9.0 71 243-320 53-129 (239)
97 PRK11933 yebU rRNA (cytosine-C 95.5 0.046 1E-06 62.4 8.9 80 242-325 112-195 (470)
98 PRK10742 putative methyltransf 95.5 0.039 8.6E-07 57.4 7.4 75 242-323 85-174 (250)
99 KOG2915|consensus 95.4 0.032 7E-07 58.1 6.5 91 226-322 91-186 (314)
100 PF01135 PCMT: Protein-L-isoas 95.4 0.052 1.1E-06 55.5 8.0 96 222-325 54-153 (209)
101 COG2519 GCD14 tRNA(1-methylade 95.4 0.04 8.6E-07 57.2 7.0 76 241-322 92-172 (256)
102 TIGR03704 PrmC_rel_meth putati 95.4 0.05 1.1E-06 57.2 8.0 76 244-323 87-163 (251)
103 PRK04266 fibrillarin; Provisio 95.3 0.088 1.9E-06 54.5 9.5 75 242-319 71-147 (226)
104 TIGR00091 tRNA (guanine-N(7)-) 95.3 0.043 9.4E-07 55.2 7.0 77 243-322 16-96 (194)
105 PRK03522 rumB 23S rRNA methylu 95.3 0.049 1.1E-06 59.2 7.8 71 243-320 173-247 (315)
106 PRK01683 trans-aconitate 2-met 95.3 0.087 1.9E-06 55.2 9.4 81 229-321 20-101 (258)
107 TIGR02021 BchM-ChlM magnesium 95.2 0.073 1.6E-06 54.4 8.6 67 242-319 54-125 (219)
108 TIGR00479 rumA 23S rRNA (uraci 95.2 0.071 1.5E-06 60.5 9.1 84 229-321 281-370 (431)
109 PRK09328 N5-glutamine S-adenos 95.2 0.08 1.7E-06 55.9 9.0 77 242-325 107-187 (275)
110 PRK15451 tRNA cmo(5)U34 methyl 95.2 0.07 1.5E-06 55.8 8.3 74 242-322 55-134 (247)
111 PRK05785 hypothetical protein; 95.0 0.2 4.3E-06 51.8 11.2 147 243-410 51-204 (226)
112 PRK00312 pcm protein-L-isoaspa 94.9 0.12 2.6E-06 52.5 9.2 89 223-322 61-153 (212)
113 PRK14966 unknown domain/N5-glu 94.9 0.063 1.4E-06 60.1 7.5 73 243-320 251-326 (423)
114 PRK14967 putative methyltransf 94.8 0.1 2.2E-06 53.6 8.2 75 242-324 35-112 (223)
115 PRK06922 hypothetical protein; 94.8 0.066 1.4E-06 62.8 7.4 75 242-320 417-494 (677)
116 TIGR00536 hemK_fam HemK family 94.8 0.12 2.6E-06 55.3 8.9 56 244-300 115-175 (284)
117 PRK14103 trans-aconitate 2-met 94.7 0.086 1.9E-06 55.3 7.7 90 228-332 17-106 (255)
118 TIGR02085 meth_trns_rumB 23S r 94.7 0.08 1.7E-06 59.0 7.7 71 243-320 233-307 (374)
119 PF02475 Met_10: Met-10+ like- 94.6 0.17 3.7E-06 51.3 9.2 94 226-328 86-184 (200)
120 PF04445 SAM_MT: Putative SAM- 94.6 0.059 1.3E-06 55.7 5.9 69 245-320 77-158 (234)
121 PF01170 UPF0020: Putative RNA 94.6 0.11 2.4E-06 51.6 7.6 76 242-323 27-116 (179)
122 COG0144 Sun tRNA and rRNA cyto 94.6 0.11 2.5E-06 57.3 8.4 86 235-325 151-241 (355)
123 PLN03075 nicotianamine synthas 94.6 0.1 2.3E-06 55.9 7.7 138 243-392 123-274 (296)
124 PRK11873 arsM arsenite S-adeno 94.6 0.11 2.4E-06 54.9 8.1 75 242-321 76-154 (272)
125 TIGR00755 ksgA dimethyladenosi 94.6 0.13 2.8E-06 54.0 8.5 75 223-303 12-88 (253)
126 PTZ00098 phosphoethanolamine N 94.5 0.19 4E-06 53.2 9.4 80 230-319 42-123 (263)
127 PRK04457 spermidine synthase; 94.4 0.11 2.4E-06 55.0 7.4 73 244-321 67-144 (262)
128 PLN02476 O-methyltransferase 94.4 0.22 4.8E-06 53.0 9.6 81 242-322 117-203 (278)
129 PF03023 MVIN: MviN-like prote 94.3 1.7 3.7E-05 49.7 17.5 52 72-124 4-57 (451)
130 PHA03411 putative methyltransf 94.3 0.15 3.2E-06 54.1 8.1 74 242-324 63-137 (279)
131 COG4122 Predicted O-methyltran 94.2 0.24 5.3E-06 50.8 9.3 82 242-325 58-144 (219)
132 PRK01544 bifunctional N5-gluta 94.2 0.16 3.5E-06 58.8 8.9 75 243-324 138-217 (506)
133 KOG1347|consensus 94.2 0.59 1.3E-05 53.7 13.3 179 40-219 25-300 (473)
134 PF01596 Methyltransf_3: O-met 94.2 0.22 4.8E-06 50.7 8.9 81 244-324 46-132 (205)
135 PF01728 FtsJ: FtsJ-like methy 94.2 0.31 6.7E-06 48.2 9.8 83 229-321 9-99 (181)
136 KOG1663|consensus 94.1 0.22 4.8E-06 50.9 8.6 77 244-320 74-156 (237)
137 PRK15099 O-antigen translocase 94.0 1.1 2.5E-05 50.1 15.1 53 130-182 171-230 (416)
138 TIGR03438 probable methyltrans 93.9 0.17 3.6E-06 54.7 7.8 63 243-305 63-130 (301)
139 TIGR03587 Pse_Me-ase pseudamin 93.8 0.27 5.8E-06 50.0 8.8 54 243-299 43-97 (204)
140 COG0293 FtsJ 23S rRNA methylas 93.8 0.22 4.7E-06 50.5 7.9 74 241-321 43-119 (205)
141 PF02390 Methyltransf_4: Putat 93.8 0.25 5.4E-06 49.9 8.4 74 244-321 18-96 (195)
142 PRK10909 rsmD 16S rRNA m(2)G96 93.8 0.19 4E-06 51.0 7.5 83 231-321 43-129 (199)
143 PF02353 CMAS: Mycolic acid cy 93.6 0.24 5.2E-06 52.8 8.2 77 229-318 51-132 (273)
144 PLN02336 phosphoethanolamine N 93.6 0.28 6.2E-06 56.3 9.4 91 230-332 256-349 (475)
145 PLN02244 tocopherol O-methyltr 93.4 0.32 7E-06 53.4 9.1 86 228-320 101-193 (340)
146 PF08241 Methyltransf_11: Meth 93.4 0.35 7.7E-06 41.4 7.6 67 248-321 1-68 (95)
147 PF01554 MatE: MatE; InterPro 93.3 0.094 2E-06 50.2 4.2 74 51-125 1-74 (162)
148 PF03848 TehB: Tellurite resis 92.8 0.32 7E-06 48.9 7.2 52 230-287 20-71 (192)
149 COG2265 TrmA SAM-dependent met 92.7 0.3 6.5E-06 55.3 7.7 87 226-320 279-369 (432)
150 TIGR02987 met_A_Alw26 type II 92.4 0.98 2.1E-05 52.7 11.7 44 244-287 32-83 (524)
151 PRK11705 cyclopropane fatty ac 92.4 0.53 1.2E-05 52.6 9.1 65 231-300 158-223 (383)
152 PLN02589 caffeoyl-CoA O-methyl 92.3 0.62 1.3E-05 48.9 8.9 78 244-321 80-164 (247)
153 PRK11207 tellurite resistance 92.1 0.34 7.4E-06 48.8 6.6 65 231-301 21-89 (197)
154 PF05958 tRNA_U5-meth_tr: tRNA 92.1 0.23 4.9E-06 54.9 5.7 68 227-301 184-255 (352)
155 TIGR00477 tehB tellurite resis 92.0 0.26 5.7E-06 49.6 5.6 51 229-285 19-69 (195)
156 TIGR02072 BioC biotin biosynth 92.0 0.58 1.3E-05 47.8 8.2 73 244-323 35-108 (240)
157 COG2890 HemK Methylase of poly 91.8 0.45 9.8E-06 50.9 7.4 67 246-321 113-184 (280)
158 PRK05031 tRNA (uracil-5-)-meth 91.8 0.72 1.6E-05 51.2 9.2 55 245-302 208-266 (362)
159 TIGR02081 metW methionine bios 91.7 0.4 8.7E-06 48.0 6.5 80 229-321 4-83 (194)
160 PRK01581 speE spermidine synth 91.6 0.45 9.7E-06 52.5 7.1 73 244-321 151-234 (374)
161 PRK00811 spermidine synthase; 91.6 0.59 1.3E-05 50.0 8.0 73 244-321 77-158 (283)
162 TIGR02716 C20_methyl_CrtF C-20 91.5 0.5 1.1E-05 51.0 7.4 65 232-301 141-210 (306)
163 PRK11088 rrmA 23S rRNA methylt 91.0 0.85 1.8E-05 48.4 8.5 69 243-318 85-156 (272)
164 PRK09489 rsmC 16S ribosomal RN 91.0 0.74 1.6E-05 50.7 8.2 71 243-321 196-269 (342)
165 PF03602 Cons_hypoth95: Conser 91.0 0.73 1.6E-05 46.1 7.5 87 230-321 30-122 (183)
166 PLN02366 spermidine synthase 90.8 0.95 2.1E-05 49.1 8.7 74 244-321 92-173 (308)
167 PHA03412 putative methyltransf 90.7 0.6 1.3E-05 48.5 6.7 70 244-320 50-121 (241)
168 PRK15128 23S rRNA m(5)C1962 me 90.7 0.77 1.7E-05 51.6 8.1 75 243-320 220-300 (396)
169 PRK15001 SAM-dependent 23S rib 90.7 0.77 1.7E-05 51.2 8.0 73 242-321 227-306 (378)
170 TIGR00095 RNA methyltransferas 90.6 1 2.3E-05 45.1 8.3 78 243-323 49-131 (189)
171 PLN02336 phosphoethanolamine N 90.5 0.54 1.2E-05 54.0 6.9 84 230-322 27-112 (475)
172 COG4262 Predicted spermidine s 90.4 17 0.00038 39.9 17.3 63 255-321 298-373 (508)
173 PF03291 Pox_MCEL: mRNA cappin 90.4 0.51 1.1E-05 51.7 6.2 61 223-287 44-105 (331)
174 COG2521 Predicted archaeal met 90.3 0.47 1E-05 48.7 5.3 73 242-320 133-212 (287)
175 PRK10258 biotin biosynthesis p 90.3 1.2 2.6E-05 46.4 8.7 81 228-321 30-111 (251)
176 PLN02490 MPBQ/MSBQ methyltrans 90.1 1.2 2.5E-05 49.0 8.7 72 242-319 112-184 (340)
177 PF02254 TrkA_N: TrkA-N domain 89.9 0.77 1.7E-05 41.6 6.0 67 252-322 4-71 (116)
178 PLN02396 hexaprenyldihydroxybe 89.6 0.81 1.8E-05 49.9 6.9 70 242-319 130-204 (322)
179 COG2518 Pcm Protein-L-isoaspar 89.5 1.4 3E-05 44.9 8.0 103 222-335 54-166 (209)
180 COG4106 Tam Trans-aconitate me 89.5 0.75 1.6E-05 46.8 6.0 54 230-287 20-74 (257)
181 TIGR00486 YbgI_SA1388 dinuclea 89.5 0.73 1.6E-05 48.4 6.3 78 641-719 1-99 (249)
182 PF00398 RrnaAD: Ribosomal RNA 89.4 1.1 2.3E-05 47.5 7.5 76 224-305 14-91 (262)
183 PRK13255 thiopurine S-methyltr 89.4 1.7 3.7E-05 44.7 8.8 40 242-284 36-75 (218)
184 TIGR00452 methyltransferase, p 89.3 1 2.2E-05 49.0 7.4 88 232-332 113-205 (314)
185 PRK07580 Mg-protoporphyrin IX 89.3 1.5 3.4E-05 44.7 8.5 68 242-320 62-134 (230)
186 TIGR03840 TMPT_Se_Te thiopurin 89.2 1.3 2.8E-05 45.4 7.7 40 242-284 33-72 (213)
187 PRK15068 tRNA mo(5)U34 methylt 89.1 1.1 2.3E-05 49.1 7.4 76 233-319 115-195 (322)
188 COG2263 Predicted RNA methylas 89.0 1.3 2.9E-05 44.2 7.2 69 242-320 44-115 (198)
189 PF04506 Rft-1: Rft protein; 88.9 17 0.00037 42.7 17.6 72 43-114 253-327 (549)
190 TIGR02143 trmA_only tRNA (urac 88.8 1.8 4E-05 47.8 9.1 68 228-302 186-257 (353)
191 PLN02585 magnesium protoporphy 88.6 1.5 3.3E-05 47.6 8.2 54 229-285 130-183 (315)
192 KOG2904|consensus 88.4 1.5 3.2E-05 46.2 7.4 153 244-410 149-317 (328)
193 smart00828 PKS_MT Methyltransf 88.4 1.3 2.9E-05 45.1 7.2 55 246-301 2-61 (224)
194 TIGR00478 tly hemolysin TlyA f 88.4 2.1 4.6E-05 44.3 8.7 87 229-326 63-151 (228)
195 PRK12335 tellurite resistance 88.2 1.5 3.2E-05 46.9 7.8 40 243-285 120-159 (287)
196 PF01564 Spermine_synth: Sperm 87.9 1.8 4E-05 45.3 8.0 74 243-321 77-158 (246)
197 PF13578 Methyltransf_24: Meth 87.8 0.47 1E-05 42.4 3.1 66 254-322 7-78 (106)
198 TIGR00417 speE spermidine synt 87.8 2.9 6.3E-05 44.3 9.6 73 244-321 73-153 (270)
199 COG2520 Predicted methyltransf 87.0 1.3 2.7E-05 48.6 6.3 100 224-332 171-275 (341)
200 PF08242 Methyltransf_12: Meth 86.9 0.23 4.9E-06 43.7 0.4 69 248-320 1-73 (99)
201 PRK10799 metal-binding protein 86.5 3 6.4E-05 43.8 8.6 77 642-720 2-99 (247)
202 TIGR03439 methyl_EasF probable 85.2 2.8 6E-05 45.7 7.8 89 243-332 76-174 (319)
203 PF01784 NIF3: NIF3 (NGG1p int 85.1 1.8 3.8E-05 45.3 6.1 62 658-720 22-97 (241)
204 COG2230 Cfa Cyclopropane fatty 85.0 2.3 5E-05 45.4 6.9 68 230-302 62-134 (283)
205 PRK05134 bifunctional 3-demeth 84.9 2.9 6.4E-05 42.9 7.6 73 242-321 47-122 (233)
206 KOG3420|consensus 84.7 0.68 1.5E-05 44.1 2.5 86 243-348 48-136 (185)
207 PRK00536 speE spermidine synth 84.5 2.2 4.8E-05 45.1 6.5 68 242-321 72-147 (262)
208 PRK04148 hypothetical protein; 84.3 3.1 6.6E-05 39.5 6.7 43 242-286 15-57 (134)
209 COG2264 PrmA Ribosomal protein 84.2 1.7 3.6E-05 46.8 5.5 75 242-321 161-237 (300)
210 KOG2864|consensus 84.0 62 0.0014 36.9 17.4 117 44-160 240-453 (530)
211 PRK04338 N(2),N(2)-dimethylgua 83.6 2.8 6E-05 46.9 7.1 71 244-320 58-132 (382)
212 PRK11783 rlmL 23S rRNA m(2)G24 83.4 2.6 5.7E-05 50.9 7.4 72 243-320 538-615 (702)
213 COG0220 Predicted S-adenosylme 83.1 3.3 7.1E-05 42.9 7.0 74 245-321 50-127 (227)
214 PF02384 N6_Mtase: N-6 DNA Met 83.0 2.2 4.8E-05 46.0 6.0 83 242-328 45-140 (311)
215 PF01209 Ubie_methyltran: ubiE 82.8 0.82 1.8E-05 47.5 2.5 40 372-411 27-70 (233)
216 PRK01544 bifunctional N5-gluta 80.8 3.2 6.9E-05 48.3 6.5 75 243-321 347-425 (506)
217 TIGR01444 fkbM_fam methyltrans 80.7 3 6.6E-05 39.1 5.3 55 246-301 1-59 (143)
218 PRK11727 23S rRNA mA1618 methy 80.6 4.8 0.0001 43.9 7.4 77 243-321 114-197 (321)
219 COG0742 N6-adenine-specific me 80.4 6.2 0.00014 39.5 7.5 87 232-324 33-125 (187)
220 COG0728 MviN Uncharacterized m 79.8 1.3E+02 0.0028 35.2 22.8 76 40-118 8-85 (518)
221 PF00891 Methyltransf_2: O-met 79.1 5.2 0.00011 41.4 6.9 55 242-300 99-153 (241)
222 COG0421 SpeE Spermidine syntha 79.1 6 0.00013 42.4 7.4 72 245-321 78-157 (282)
223 PLN02823 spermine synthase 79.0 7.1 0.00015 42.9 8.2 72 245-321 105-184 (336)
224 KOG0820|consensus 78.6 8.7 0.00019 40.6 8.1 85 225-322 43-132 (315)
225 COG0030 KsgA Dimethyladenosine 78.3 7.2 0.00016 41.2 7.6 90 224-323 14-105 (259)
226 PF06325 PrmA: Ribosomal prote 77.7 5.9 0.00013 42.7 6.9 70 242-322 160-234 (295)
227 PF06962 rRNA_methylase: Putat 77.5 2.5 5.5E-05 40.3 3.6 40 439-478 72-116 (140)
228 KOG1540|consensus 76.2 13 0.00028 39.1 8.5 166 230-410 90-273 (296)
229 TIGR00308 TRM1 tRNA(guanine-26 76.1 6.4 0.00014 43.9 6.9 76 245-325 46-125 (374)
230 PF12836 HHH_3: Helix-hairpin- 75.9 0.86 1.9E-05 37.4 0.0 41 359-405 8-49 (65)
231 KOG3191|consensus 75.7 21 0.00046 35.7 9.4 75 243-323 43-120 (209)
232 PRK13256 thiopurine S-methyltr 74.9 11 0.00025 38.9 7.9 40 242-284 42-81 (226)
233 KOG1540|consensus 74.8 3.5 7.5E-05 43.2 4.0 42 437-478 192-233 (296)
234 PF03059 NAS: Nicotianamine sy 73.8 5.4 0.00012 42.5 5.3 67 252-323 127-202 (276)
235 smart00138 MeTrc Methyltransfe 72.9 8.2 0.00018 40.8 6.5 44 243-286 99-150 (264)
236 PRK11524 putative methyltransf 71.8 6.7 0.00015 41.9 5.6 56 226-288 194-251 (284)
237 COG2226 UbiE Methylase involve 70.1 4.5 9.7E-05 42.2 3.6 41 437-477 134-174 (238)
238 PLN02672 methionine S-methyltr 69.7 6.9 0.00015 49.2 5.7 73 244-321 119-211 (1082)
239 TIGR03128 RuMP_HxlA 3-hexulose 69.1 72 0.0016 32.0 12.2 126 537-699 63-189 (206)
240 PF08003 Methyltransf_9: Prote 68.7 13 0.00027 40.2 6.6 74 242-324 114-192 (315)
241 KOG2360|consensus 67.1 3.9 8.5E-05 45.0 2.5 97 235-350 208-308 (413)
242 COG3963 Phospholipid N-methylt 66.8 29 0.00063 34.3 8.1 88 230-321 38-125 (194)
243 TIGR01983 UbiG ubiquinone bios 66.4 24 0.00052 35.7 8.1 71 243-320 45-119 (224)
244 COG1041 Predicted DNA modifica 66.3 11 0.00024 41.3 5.7 78 232-320 189-271 (347)
245 PF04989 CmcI: Cephalosporin h 66.0 33 0.00072 35.0 8.8 87 228-320 23-118 (206)
246 COG2813 RsmC 16S RNA G1207 met 65.5 8.5 0.00018 41.4 4.6 75 233-319 151-230 (300)
247 PF02579 Nitro_FeMo-Co: Dinitr 64.4 10 0.00022 32.8 4.3 40 677-716 41-80 (94)
248 COG1555 ComEA DNA uptake prote 63.7 5.9 0.00013 38.3 2.8 40 359-404 91-131 (149)
249 PRK11783 rlmL 23S rRNA m(2)G24 63.4 18 0.00039 43.8 7.5 49 269-320 257-310 (702)
250 COG0327 Uncharacterized conser 63.2 36 0.00078 35.8 8.8 60 657-716 25-98 (250)
251 PF05401 NodS: Nodulation prot 62.6 20 0.00042 36.4 6.3 67 244-319 44-112 (201)
252 PRK11760 putative 23S rRNA C24 62.2 29 0.00064 38.1 8.0 67 242-321 210-278 (357)
253 PLN02232 ubiquinone biosynthes 62.1 7 0.00015 37.9 3.1 39 437-476 59-97 (160)
254 TIGR00426 competence protein C 61.8 5.9 0.00013 32.7 2.1 41 359-404 10-51 (69)
255 PF05724 TPMT: Thiopurine S-me 61.3 28 0.0006 35.8 7.4 68 230-303 27-110 (218)
256 PF07021 MetW: Methionine bios 61.0 41 0.00089 33.9 8.2 69 242-319 12-81 (193)
257 PF13489 Methyltransf_23: Meth 60.5 30 0.00065 32.5 7.2 116 242-375 21-155 (161)
258 PF08123 DOT1: Histone methyla 60.1 51 0.0011 33.6 9.0 88 228-321 30-130 (205)
259 COG1092 Predicted SAM-dependen 59.1 30 0.00065 38.9 7.7 85 230-320 206-297 (393)
260 KOG3339|consensus 58.9 27 0.00059 34.8 6.4 36 251-286 44-85 (211)
261 COG0116 Predicted N6-adenine-s 58.5 8.1 0.00018 42.9 3.1 93 270-407 256-353 (381)
262 cd04726 KGPDC_HPS 3-Keto-L-gul 58.2 1.5E+02 0.0033 29.3 12.2 124 537-698 64-188 (202)
263 PF01555 N6_N4_Mtase: DNA meth 57.5 21 0.00046 35.7 5.9 54 225-285 176-230 (231)
264 PF10672 Methyltrans_SAM: S-ad 57.4 40 0.00087 36.2 8.0 73 243-320 123-202 (286)
265 KOG4589|consensus 55.4 17 0.00036 36.5 4.3 37 242-278 68-104 (232)
266 COG0269 SgbH 3-hexulose-6-phos 54.9 1.1E+02 0.0024 31.4 10.2 76 573-698 119-194 (217)
267 cd00851 MTH1175 This uncharact 54.3 25 0.00055 30.9 5.1 43 676-718 50-92 (103)
268 PF08241 Methyltransf_11: Meth 54.0 6.2 0.00013 33.4 1.0 22 436-457 74-95 (95)
269 PF13679 Methyltransf_32: Meth 53.6 35 0.00076 32.2 6.3 44 242-285 24-70 (141)
270 PRK13798 putative OHCU decarbo 52.6 30 0.00065 34.1 5.7 57 342-411 1-57 (166)
271 PF11599 AviRa: RRNA methyltra 52.5 21 0.00046 36.6 4.6 42 245-287 53-97 (246)
272 TIGR00262 trpA tryptophan synt 51.4 1.2E+02 0.0026 32.0 10.3 120 540-698 105-229 (256)
273 COG2227 UbiG 2-polyprenyl-3-me 51.0 23 0.00049 36.9 4.7 40 243-285 59-98 (243)
274 cd07395 MPP_CSTP1 Homo sapiens 49.3 36 0.00078 35.5 6.1 57 541-597 155-220 (262)
275 PRK10459 colanic acid exporter 49.1 2.6E+02 0.0057 31.8 13.7 27 129-155 167-193 (492)
276 COG1646 Predicted phosphate-bi 48.5 3.4E+02 0.0074 28.3 14.4 64 640-703 146-227 (240)
277 PRK04148 hypothetical protein; 47.2 88 0.0019 29.7 7.7 64 644-717 2-66 (134)
278 TIGR00438 rrmJ cell division p 46.9 22 0.00047 35.3 3.8 26 436-461 123-148 (188)
279 cd00562 NifX_NifB This CD repr 46.8 38 0.00081 29.6 5.0 43 676-718 48-90 (102)
280 KOG2187|consensus 46.7 39 0.00083 39.0 6.0 54 242-298 382-439 (534)
281 COG4858 Uncharacterized membra 46.4 89 0.0019 31.2 7.6 31 38-71 37-67 (226)
282 PRK00124 hypothetical protein; 46.3 1.3E+02 0.0027 29.3 8.7 79 640-721 9-98 (151)
283 COG1064 AdhP Zn-dependent alco 46.0 54 0.0012 36.1 6.9 71 242-320 165-236 (339)
284 PF12847 Methyltransf_18: Meth 45.7 16 0.00035 32.3 2.5 23 436-458 88-110 (112)
285 cd00945 Aldolase_Class_I Class 45.3 1.1E+02 0.0023 29.9 8.6 59 536-596 64-125 (201)
286 COG1433 Uncharacterized conser 45.0 40 0.00087 31.4 4.9 44 675-718 51-94 (121)
287 PRK07402 precorrin-6B methylas 44.6 32 0.00069 34.3 4.6 38 437-475 120-158 (196)
288 PRK11188 rrmJ 23S rRNA methylt 43.1 40 0.00086 34.3 5.1 25 438-462 144-168 (209)
289 PLN02233 ubiquinone biosynthes 43.0 22 0.00047 37.5 3.3 32 435-466 158-189 (261)
290 KOG2198|consensus 43.0 61 0.0013 35.9 6.7 85 242-326 154-249 (375)
291 PF14164 YqzH: YqzH-like prote 42.9 67 0.0015 26.5 5.2 44 364-410 7-58 (64)
292 COG1671 Uncharacterized protei 42.8 1.2E+02 0.0026 29.4 7.7 73 640-715 10-90 (150)
293 PRK00377 cbiT cobalt-precorrin 42.7 15 0.00033 36.8 2.0 39 435-474 121-160 (198)
294 KOG3010|consensus 42.0 39 0.00085 35.3 4.7 40 245-287 35-74 (261)
295 KOG1122|consensus 41.9 28 0.0006 39.1 3.9 48 233-283 234-281 (460)
296 PRK11207 tellurite resistance 41.2 25 0.00055 35.2 3.3 31 435-465 110-140 (197)
297 cd00842 MPP_ASMase acid sphing 40.9 48 0.001 35.3 5.6 57 540-597 203-263 (296)
298 TIGR02469 CbiT precorrin-6Y C5 40.6 15 0.00033 33.0 1.4 26 435-461 98-123 (124)
299 TIGR03704 PrmC_rel_meth putati 40.4 44 0.00095 35.1 5.1 42 432-474 189-230 (251)
300 PF13653 GDPD_2: Glycerophosph 40.3 23 0.00049 24.7 1.9 21 539-559 9-29 (30)
301 PF01102 Glycophorin_A: Glycop 40.1 28 0.00062 32.4 3.1 26 2-27 70-95 (122)
302 KOG2899|consensus 39.6 50 0.0011 34.6 5.0 59 228-288 44-103 (288)
303 COG4798 Predicted methyltransf 39.3 25 0.00054 35.5 2.8 37 241-277 46-82 (238)
304 PRK13699 putative methylase; P 39.0 60 0.0013 33.5 5.7 57 225-288 148-206 (227)
305 PRK09496 trkA potassium transp 38.9 72 0.0016 36.1 6.9 66 252-320 237-304 (453)
306 TIGR00477 tehB tellurite resis 38.6 30 0.00065 34.6 3.4 28 436-463 110-137 (195)
307 COG4952 Predicted sugar isomer 37.8 27 0.00059 37.0 2.9 29 586-614 95-123 (430)
308 PLN02417 dihydrodipicolinate s 37.5 1.8E+02 0.004 30.9 9.3 118 539-698 82-202 (280)
309 PRK10669 putative cation:proto 37.4 7.4E+02 0.016 29.1 17.0 67 252-322 423-490 (558)
310 PF06859 Bin3: Bicoid-interact 37.2 31 0.00068 31.6 2.8 29 429-457 14-42 (110)
311 PRK14902 16S rRNA methyltransf 36.6 50 0.0011 37.7 5.1 36 439-475 359-398 (444)
312 COG1593 DctQ TRAP-type C4-dica 36.2 6E+02 0.013 28.5 13.0 47 97-146 70-127 (379)
313 PF07287 DUF1446: Protein of u 35.8 1E+02 0.0022 34.3 7.2 106 574-700 61-171 (362)
314 TIGR02752 MenG_heptapren 2-hep 35.6 32 0.0007 35.0 3.1 38 437-474 129-166 (231)
315 PRK09328 N5-glutamine S-adenos 35.6 57 0.0012 34.1 5.1 42 432-474 211-252 (275)
316 COG1103 Archaea-specific pyrid 35.4 79 0.0017 33.6 5.7 70 641-719 61-130 (382)
317 PF08242 Methyltransf_12: Meth 35.2 22 0.00047 30.9 1.5 20 436-455 80-99 (99)
318 PF09587 PGA_cap: Bacterial ca 35.1 35 0.00075 35.6 3.3 26 541-566 207-232 (250)
319 PF01943 Polysacc_synt: Polysa 35.1 4.8E+02 0.01 26.2 23.0 29 130-158 165-193 (273)
320 PF10923 DUF2791: P-loop Domai 34.9 1.5E+02 0.0032 33.7 8.3 157 261-439 232-398 (416)
321 PRK08091 ribulose-phosphate 3- 34.7 2.2E+02 0.0048 29.6 9.0 27 670-696 181-207 (228)
322 CHL00200 trpA tryptophan synth 34.2 4.9E+02 0.011 27.6 11.7 121 540-697 109-232 (263)
323 PF06570 DUF1129: Protein of u 33.9 2.2E+02 0.0048 28.8 8.9 15 40-54 25-39 (206)
324 PF02153 PDH: Prephenate dehyd 33.6 63 0.0014 34.0 5.0 60 263-322 6-79 (258)
325 PRK07666 fabG 3-ketoacyl-(acyl 33.6 1.3E+02 0.0027 30.5 7.2 75 251-325 13-96 (239)
326 TIGR03249 KdgD 5-dehydro-4-deo 33.5 2E+02 0.0042 30.9 8.9 47 541-591 90-137 (296)
327 PRK03562 glutathione-regulated 33.2 9.2E+02 0.02 28.9 29.4 71 245-321 401-472 (621)
328 PF04672 Methyltransf_19: S-ad 32.5 1.3E+02 0.0029 31.9 7.1 78 228-308 55-139 (267)
329 PRK03659 glutathione-regulated 32.5 9.2E+02 0.02 28.7 19.1 70 247-322 403-473 (601)
330 PRK06372 translation initiatio 32.5 2.4E+02 0.0053 29.7 9.0 74 383-476 34-107 (253)
331 PRK06940 short chain dehydroge 32.5 1.1E+02 0.0024 32.0 6.7 72 253-324 9-87 (275)
332 cd03466 Nitrogenase_NifN_2 Nit 31.3 4.2E+02 0.009 30.1 11.4 162 535-717 207-397 (429)
333 TIGR01259 comE comEA protein. 31.2 32 0.00069 31.9 2.0 40 359-404 62-102 (120)
334 COG1491 Predicted RNA-binding 31.1 51 0.0011 32.8 3.4 29 380-408 139-167 (202)
335 PRK08263 short chain dehydroge 30.9 1.8E+02 0.0039 30.2 7.9 74 251-325 9-89 (275)
336 COG2242 CobL Precorrin-6B meth 30.4 17 0.00036 36.5 -0.0 36 428-465 105-140 (187)
337 COG2245 Predicted membrane pro 30.2 5.6E+02 0.012 25.5 12.3 35 143-180 35-69 (182)
338 PRK14967 putative methyltransf 30.0 84 0.0018 32.0 5.1 23 436-458 136-158 (223)
339 PRK14904 16S rRNA methyltransf 29.8 79 0.0017 36.1 5.3 36 440-475 358-396 (445)
340 PRK12939 short chain dehydroge 29.8 2.2E+02 0.0047 28.7 8.2 77 250-326 12-97 (250)
341 TIGR02003 PTS-II-BC-unk1 PTS s 29.5 3.8E+02 0.0082 31.7 10.7 69 163-234 166-243 (548)
342 PRK06027 purU formyltetrahydro 29.2 2.3E+02 0.005 30.4 8.4 118 570-719 17-146 (286)
343 cd00953 KDG_aldolase KDG (2-ke 28.7 4.6E+02 0.0099 27.8 10.6 52 539-594 80-131 (279)
344 PRK04302 triosephosphate isome 28.6 4.5E+02 0.0097 26.8 10.2 118 539-696 73-202 (223)
345 PF07279 DUF1442: Protein of u 28.6 1.8E+02 0.0039 29.9 6.9 89 228-322 28-124 (218)
346 PRK06197 short chain dehydroge 28.5 2.6E+02 0.0056 29.6 8.8 81 244-325 16-107 (306)
347 COG4076 Predicted RNA methylas 28.3 76 0.0017 32.0 4.1 52 244-298 33-88 (252)
348 TIGR00655 PurU formyltetrahydr 28.3 3.4E+02 0.0075 29.0 9.5 118 571-718 12-140 (280)
349 TIGR00563 rsmB ribosomal RNA s 28.2 75 0.0016 36.0 4.7 37 439-475 348-387 (426)
350 PRK09489 rsmC 16S ribosomal RN 28.1 65 0.0014 35.5 4.1 42 434-475 278-320 (342)
351 PF14579 HHH_6: Helix-hairpin- 27.8 61 0.0013 28.2 3.1 28 379-406 35-62 (90)
352 PRK13010 purU formyltetrahydro 27.8 1.9E+02 0.0041 31.2 7.4 122 570-719 20-150 (289)
353 cd07381 MPP_CapA CapA and rela 27.7 47 0.001 34.3 2.8 28 538-565 192-222 (239)
354 PRK09140 2-dehydro-3-deoxy-6-p 27.5 89 0.0019 31.8 4.7 50 673-722 63-116 (206)
355 cd07403 MPP_TTHA0053 Thermus t 27.4 2.5E+02 0.0055 25.9 7.4 70 527-596 21-104 (129)
356 COG1561 Uncharacterized stress 27.3 55 0.0012 35.0 3.2 51 422-477 208-258 (290)
357 PF02639 DUF188: Uncharacteriz 27.2 2.5E+02 0.0053 26.5 7.2 71 648-721 3-82 (130)
358 smart00854 PGA_cap Bacterial c 27.0 50 0.0011 34.2 2.8 28 538-565 190-220 (239)
359 cd07399 MPP_YvnB Bacillus subt 27.0 88 0.0019 31.8 4.6 47 551-597 108-163 (214)
360 PF05185 PRMT5: PRMT5 arginine 27.0 1.2E+02 0.0027 34.7 6.2 69 244-318 187-263 (448)
361 PRK10258 biotin biosynthesis p 26.6 85 0.0018 32.5 4.5 27 437-463 118-144 (251)
362 KOG1271|consensus 26.6 72 0.0016 32.1 3.6 30 442-471 164-193 (227)
363 PRK11070 ssDNA exonuclease Rec 26.5 1E+02 0.0022 36.6 5.4 39 681-719 119-160 (575)
364 PRK08267 short chain dehydroge 26.4 1.9E+02 0.0041 29.6 7.1 73 253-325 9-89 (260)
365 cd00852 NifB NifB belongs to a 26.4 1.5E+02 0.0034 26.3 5.6 31 688-718 64-94 (106)
366 TIGR00740 methyltransferase, p 26.3 88 0.0019 32.1 4.5 36 437-472 139-174 (239)
367 cd01468 trunk_domain trunk dom 26.3 72 0.0016 33.0 3.9 29 432-460 19-49 (239)
368 PLN02591 tryptophan synthase 26.2 7.8E+02 0.017 25.9 11.9 122 540-698 96-220 (250)
369 PRK09072 short chain dehydroge 26.2 2.3E+02 0.0049 29.1 7.7 76 250-325 10-92 (263)
370 PRK04266 fibrillarin; Provisio 26.0 74 0.0016 32.9 3.8 20 438-457 155-174 (226)
371 PRK12829 short chain dehydroge 25.9 3.4E+02 0.0073 27.6 8.9 76 247-324 16-97 (264)
372 cd01974 Nitrogenase_MoFe_beta 25.6 5.1E+02 0.011 29.4 10.9 75 639-717 311-402 (435)
373 PTZ00098 phosphoethanolamine N 25.6 66 0.0014 33.9 3.5 25 437-461 134-158 (263)
374 PRK07074 short chain dehydroge 25.5 1.8E+02 0.004 29.6 6.8 74 251-324 8-88 (257)
375 PF14045 YIEGIA: YIEGIA protei 25.3 4.7E+02 0.01 27.9 9.4 23 86-108 32-54 (285)
376 PRK08251 short chain dehydroge 25.3 2.3E+02 0.005 28.6 7.4 76 250-325 7-93 (248)
377 KOG1975|consensus 25.2 81 0.0018 34.4 3.9 42 242-285 116-157 (389)
378 TIGR03840 TMPT_Se_Te thiopurin 25.2 69 0.0015 32.7 3.4 31 430-462 125-155 (213)
379 PF13489 Methyltransf_23: Meth 25.2 54 0.0012 30.8 2.5 25 438-462 94-118 (161)
380 COG0569 TrkA K+ transport syst 25.1 1.7E+02 0.0036 30.2 6.3 67 253-323 7-76 (225)
381 PRK14901 16S rRNA methyltransf 24.7 1.2E+02 0.0025 34.6 5.5 38 438-475 363-403 (434)
382 PF08759 DUF1792: Domain of un 24.6 4.1E+02 0.0088 27.6 8.7 88 639-727 98-207 (225)
383 PF11363 DUF3164: Protein of u 24.4 2.3E+02 0.0051 28.6 6.9 86 373-463 93-179 (195)
384 PF02353 CMAS: Mycolic acid cy 24.4 74 0.0016 33.9 3.6 33 436-468 143-175 (273)
385 cd01478 Sec23-like Sec23-like: 24.3 84 0.0018 33.4 3.9 30 433-462 17-46 (267)
386 TIGR02716 C20_methyl_CrtF C-20 24.1 74 0.0016 34.2 3.6 26 436-461 231-256 (306)
387 PF14871 GHL6: Hypothetical gl 24.1 1.7E+02 0.0038 27.5 5.6 54 541-594 4-67 (132)
388 cd07396 MPP_Nbla03831 Homo sap 24.0 1.6E+02 0.0036 30.8 6.1 46 552-597 182-230 (267)
389 TIGR00091 tRNA (guanine-N(7)-) 24.0 1.1E+02 0.0023 30.6 4.5 36 439-474 112-147 (194)
390 TIGR02002 PTS-II-BC-glcB PTS s 24.0 3.8E+02 0.0083 31.2 9.5 70 162-234 157-232 (502)
391 PF14362 DUF4407: Domain of un 23.6 9.1E+02 0.02 25.7 13.3 80 139-226 23-108 (301)
392 PLN03209 translocon at the inn 23.6 3E+02 0.0066 32.6 8.6 80 243-325 79-171 (576)
393 PF10112 Halogen_Hydrol: 5-bro 23.6 2.7E+02 0.0058 27.9 7.3 18 165-182 4-21 (199)
394 PRK07024 short chain dehydroge 23.5 2.8E+02 0.006 28.4 7.7 75 251-325 8-90 (257)
395 PRK07478 short chain dehydroge 23.5 3.7E+02 0.0081 27.3 8.6 79 245-324 7-94 (254)
396 COG1189 Predicted rRNA methyla 23.4 2.6E+02 0.0056 29.3 7.0 83 230-321 68-152 (245)
397 cd07401 MPP_TMEM62_N Homo sapi 23.4 1.2E+02 0.0026 31.8 4.9 47 549-597 165-212 (256)
398 PRK10538 malonic semialdehyde 23.3 2.7E+02 0.0059 28.3 7.5 74 251-325 6-86 (248)
399 TIGR00291 RNA_SBDS rRNA metabo 23.1 1E+02 0.0022 32.1 4.1 63 361-427 57-129 (231)
400 PRK05866 short chain dehydroge 23.1 2.6E+02 0.0056 29.7 7.5 75 250-324 45-128 (293)
401 PRK11089 PTS system glucose-sp 23.0 5.5E+02 0.012 29.8 10.4 90 141-234 120-215 (477)
402 PRK06194 hypothetical protein; 23.0 3.7E+02 0.008 27.9 8.6 81 245-326 7-96 (287)
403 PRK08945 putative oxoacyl-(acy 23.0 1.7E+02 0.0036 29.8 5.8 77 250-326 17-105 (247)
404 PF08660 Alg14: Oligosaccharid 22.9 46 0.001 32.8 1.5 35 251-285 4-45 (170)
405 PRK10537 voltage-gated potassi 22.9 1.1E+03 0.024 26.5 18.6 105 208-321 201-310 (393)
406 COG2244 RfbX Membrane protein 22.8 1.1E+03 0.024 26.4 16.6 80 41-120 4-84 (480)
407 PRK10901 16S rRNA methyltransf 22.8 1.3E+02 0.0028 34.2 5.3 38 438-475 351-391 (427)
408 cd07378 MPP_ACP5 Homo sapiens 22.7 91 0.002 32.7 3.9 46 551-596 168-214 (277)
409 PRK06552 keto-hydroxyglutarate 22.4 1.3E+02 0.0028 30.8 4.7 44 680-723 79-122 (213)
410 PF05401 NodS: Nodulation prot 22.4 72 0.0016 32.4 2.8 28 434-461 121-148 (201)
411 PRK12335 tellurite resistance 22.3 83 0.0018 33.5 3.5 30 436-465 200-229 (287)
412 TIGR02663 nifX nitrogen fixati 22.1 1.8E+02 0.0039 26.7 5.2 32 688-719 62-93 (119)
413 PRK00216 ubiE ubiquinone/menaq 22.0 81 0.0018 31.9 3.2 32 437-468 136-167 (239)
414 PRK08287 cobalt-precorrin-6Y C 21.9 1.3E+02 0.0028 29.6 4.6 21 437-457 109-129 (187)
415 PF00107 ADH_zinc_N: Zinc-bind 21.5 2.6E+02 0.0057 25.1 6.3 31 255-287 3-33 (130)
416 PF06570 DUF1129: Protein of u 21.2 7.3E+02 0.016 25.0 10.0 17 130-146 112-128 (206)
417 PF13470 PIN_3: PIN domain 21.2 74 0.0016 28.6 2.5 19 681-699 101-119 (119)
418 COG4123 Predicted O-methyltran 21.1 81 0.0018 33.2 3.0 27 434-460 145-171 (248)
419 PLN02232 ubiquinone biosynthes 20.8 1.2E+02 0.0025 29.3 3.9 57 272-335 1-64 (160)
420 PRK04457 spermidine synthase; 20.7 98 0.0021 32.7 3.6 24 439-462 157-180 (262)
421 PRK05717 oxidoreductase; Valid 20.7 4.7E+02 0.01 26.6 8.8 81 244-326 10-97 (255)
422 PRK08226 short chain dehydroge 20.6 4.4E+02 0.0095 26.9 8.5 76 250-325 11-94 (263)
423 PF00107 ADH_zinc_N: Zinc-bind 20.6 60 0.0013 29.5 1.7 23 440-462 70-92 (130)
424 PRK06500 short chain dehydroge 20.6 3E+02 0.0066 27.7 7.2 76 248-324 9-91 (249)
425 PRK08277 D-mannonate oxidoredu 20.5 2.8E+02 0.006 28.8 7.0 76 250-325 15-99 (278)
426 TIGR01285 nifN nitrogenase mol 20.5 3.3E+02 0.0071 31.0 8.0 158 535-717 221-398 (432)
427 PRK11036 putative S-adenosyl-L 20.5 77 0.0017 33.0 2.7 35 437-472 127-161 (255)
428 TIGR00536 hemK_fam HemK family 20.4 1.5E+02 0.0033 31.5 5.1 41 432-473 217-257 (284)
429 PRK05599 hypothetical protein; 20.2 3.6E+02 0.0077 27.5 7.7 76 250-325 5-89 (246)
430 COG1500 Predicted exosome subu 20.2 1.3E+02 0.0028 31.1 4.0 79 340-427 26-129 (234)
431 cd00408 DHDPS-like Dihydrodipi 20.1 6.2E+02 0.013 26.6 9.6 53 539-595 81-134 (281)
432 cd07581 nitrilase_3 Uncharacte 20.0 3.2E+02 0.007 28.0 7.3 59 531-591 143-202 (255)
No 1
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.2e-101 Score=786.76 Aligned_cols=278 Identities=46% Similarity=0.747 Sum_probs=264.4
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccc
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTE 301 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~ 301 (733)
.|||++|+++.|.+ +|+|+|||||||+||||++||+++++.++|+|+||||+|++.|+ +|. ++||+++|+||++
T Consensus 8 ipVLl~E~i~~L~~---~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 8 IPVLLNEVVELLAP---KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred cchHHHHHHHhccc---CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 59999999999999 99999999999999999999999998999999999999999995 564 6899999999999
Q ss_pred hHHHHHhCCCCcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHH
Q psy2380 302 LDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAK 381 (733)
Q Consensus 302 ~~~~l~~~~~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~ 381 (733)
+..++++.++.++||||+||||||||||+++|||||++|||||||||+++++||+||||+||++||++||++|||||+|+
T Consensus 85 l~~~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~ar 164 (314)
T COG0275 85 LAEALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAK 164 (314)
T ss_pred HHHHHHhcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHhhcCCCCC--CCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEEe
Q psy2380 382 KIAKEIVHYRSITPITRTKQLVEIILKSIRGNKR--YKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVIS 459 (733)
Q Consensus 382 ~ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~~~--~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~vis 459 (733)
+||++|+++|+++||+||.||+++|++++|.+++ ++||||||||||||+||+||++|+++|++|+++|+|||||+|||
T Consensus 165 rIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIs 244 (314)
T COG0275 165 RIARAIVERRKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAALDLLKPGGRLAVIS 244 (314)
T ss_pred HHHHHHHHHhccCCCccHHHHHHHHHHhCCchhcccCCCcchhhhhhheeeehhHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 9999999999999999999999999999996543 58999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhcCCCCCCCCCCCccccCCccccccc--ccccccc
Q psy2380 460 FHSLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFL--ARCKPKK 506 (733)
Q Consensus 460 fhSlEdr~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~i~pse 506 (733)
||||||||||+||+++++ |.+|+++|++.++..+.++++ |||.||+
T Consensus 245 FHSLEDRiVK~ff~~~s~-~~~p~~lP~~~~~~~~~~~~itkK~i~ps~ 292 (314)
T COG0275 245 FHSLEDRIVKNFFKELSK-PGVPKGLPVTEEGPALKFKLITKKPIMPSE 292 (314)
T ss_pred ecchHHHHHHHHHHHhcc-cCCCCCCCcccccccchhhhccCCCcCCCH
Confidence 999999999999999999 779999999977633336666 7999986
No 2
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=100.00 E-value=3.5e-97 Score=778.06 Aligned_cols=278 Identities=46% Similarity=0.731 Sum_probs=219.8
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccc
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTE 301 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~ 301 (733)
.|||++|+++.+.+ +|+|+|||||||+||||.+||+++++ ++|+|+|+||+|++.| ++|. ++|+.++|+||++
T Consensus 5 ~PVll~Evl~~L~~---~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 5 IPVLLKEVLEALNP---KPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred ecccHHHHHHhhCc---CCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 59999999999998 89999999999999999999999855 9999999999999998 5775 6899999999999
Q ss_pred hHHHHHhC-CCCcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchH
Q psy2380 302 LDIILKKY-NIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFA 380 (733)
Q Consensus 302 ~~~~l~~~-~~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~ 380 (733)
+.+++.+. ++.++||||+||||||||+|+++|||||++|||||||||++++.||+||||+||+++|++||++||||++|
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~I~~~yGee~~a 160 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELARIFREYGEEKFA 160 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHHHHHHHH--TTH
T ss_pred HHHHHHHccCCCccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHHHHHhcCchhHH
Confidence 99999999 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHhhcCCCC--CCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEE
Q psy2380 381 KKIAKEIVHYRSITPITRTKQLVEIILKSIRGNK--RYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVI 458 (733)
Q Consensus 381 ~~ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~~--~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~vi 458 (733)
++||++|+++|+++||+||.||+++|++++|.+. +++||||||||||||+||+||++|+.+|++++++|+||||++||
T Consensus 161 ~~IA~~Iv~~R~~~pi~tT~~L~~iI~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~a~~~L~~gGrl~VI 240 (310)
T PF01795_consen 161 RRIARAIVEARKKKPITTTKELAEIIEKAVPKKRRRRKIHPATRVFQALRIAVNDELEELERGLEAAPDLLKPGGRLVVI 240 (310)
T ss_dssp HHHHHHHHHHHHHSS--BHHHHHHHHHHHS-HHHCC-SS-TTHHHHHHHHHHHCTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCcccccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999999999999999999998643 36899999999999999999999999999999999999999999
Q ss_pred eccchhhhHHHHHHHhcCCCCCCCCCCCccccCCccccccc--ccccccc
Q psy2380 459 SFHSLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFL--ARCKPKK 506 (733)
Q Consensus 459 sfhSlEdr~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~i~pse 506 (733)
|||||||||||++|+++.+.|.||+++|+|.|+..+.++++ ||+.||+
T Consensus 241 SFHSLEDRiVK~~f~~~~~~~~~p~~lp~~~~~~~~~~~~i~kk~i~ps~ 290 (310)
T PF01795_consen 241 SFHSLEDRIVKQFFRELAKSCKCPPGLPVCECGKHPKFKLITKKPITPSE 290 (310)
T ss_dssp ESSHHHHHHHHHHHHCCSSC------------------EESESS-B---H
T ss_pred EecchhhHHHHHHHHHhcccCCCcccccccccccccceEEccCCccCCCh
Confidence 99999999999999999999999999999999888888888 8999986
No 3
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=100.00 E-value=6.4e-94 Score=755.13 Aligned_cols=274 Identities=44% Similarity=0.723 Sum_probs=257.6
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccc
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTE 301 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~ 301 (733)
.|||++|+++.+.+ +++++|||||||+||||.+||++++ +|+|||||+|++|++.|+ +|+ .+|++++|+||++
T Consensus 5 ~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 5 QSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred cchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 59999999999998 8999999999999999999999985 499999999999999994 675 4699999999999
Q ss_pred hHHHHHhCCCCcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHH
Q psy2380 302 LDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAK 381 (733)
Q Consensus 302 ~~~~l~~~~~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~ 381 (733)
+.+++++.+++++|||+|||||||||+|+++|||||++|||||||||+++++||+||||+|||+||++||++|||||+|+
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~~i~~~yGEe~~a~ 160 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLERILKKYGEEKFSK 160 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcchHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHhhcCCC--CCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEEe
Q psy2380 382 KIAKEIVHYRSITPITRTKQLVEIILKSIRGN--KRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVIS 459 (733)
Q Consensus 382 ~ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~--~~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~vis 459 (733)
+||++|+++|+++||+||.||+++|++++|.+ ++++||||||||||||+||+||++|+++|++++++|+|||||+|||
T Consensus 161 ~IA~~Iv~~R~~~~i~tt~~L~~ii~~~~p~~~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VIS 240 (305)
T TIGR00006 161 RIARAIVERRKKKPIQTTKELAELISKAVPGFSKHKSIHPATRVFQAIRIYVNDELEELEEALQFAPNLLAPGGRLSIIS 240 (305)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHcCccccccCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 99999999999999999999999999999853 2357999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhcCCCCCCCCCCCccccCCccccccc--ccccccc
Q psy2380 460 FHSLEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFL--ARCKPKK 506 (733)
Q Consensus 460 fhSlEdr~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~i~pse 506 (733)
||||||||||++|+++++. .+|+++|+|.|. .++++ ||+.|++
T Consensus 241 fHSLEDRiVK~~f~~~~~~-~~~~~~~~~~~~---~~~~lt~k~i~ps~ 285 (305)
T TIGR00006 241 FHSLEDRIVKNFFRELSKF-PQPPGLPVKETP---LYALITKKPITPSE 285 (305)
T ss_pred cCcHHHHHHHHHHHHhccc-CCCCCCCccccc---ceeEccCCCcCCCH
Confidence 9999999999999998876 368999998763 36766 7999975
No 4
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=100.00 E-value=6.2e-89 Score=717.38 Aligned_cols=268 Identities=46% Similarity=0.754 Sum_probs=250.1
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCccch
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFTEL 302 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~~~ 302 (733)
.|||++|+++.+.+ +|+++|||||+|+||||.+||++++++++|+|||+||+|++.|+ ++. .+|++++|++|+++
T Consensus 4 ~pVll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l 80 (296)
T PRK00050 4 IPVLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNL 80 (296)
T ss_pred ccccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHH
Confidence 59999999999998 88999999999999999999999977899999999999999994 665 37999999999999
Q ss_pred HHHHHhCCCCcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHH
Q psy2380 303 DIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKK 382 (733)
Q Consensus 303 ~~~l~~~~~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ 382 (733)
..++++ ++.++|||+|||||||||+|+++|||||++|||||||||+++++||+||||+||+++|++||++|||||+|++
T Consensus 81 ~~~l~~-~~~~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee~~a~~ 159 (296)
T PRK00050 81 KEVLAE-GLGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEERFARR 159 (296)
T ss_pred HHHHHc-CCCccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcchHHH
Confidence 999887 7778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEEeccc
Q psy2380 383 IAKEIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 383 ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~~~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~visfhS 462 (733)
||++|+++|+++||+||.||+++|++++|.+++++||||||||||||+||+||++|+++|++++++|+||||++||||||
T Consensus 160 iA~~Iv~~R~~~~~~tt~~L~~~i~~~~~~~~~~~hpatr~FQAlRI~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 160 IARAIVEARPKKPITTTGELAEIIKSAVPPRRKGIHPATRTFQALRIEVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHcCccCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 99999999999999999999999999999444478999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCCCCCCCCCCccccCCccccccc--ccccccc
Q psy2380 463 LEDRIVKNFINFNTKIPHIDRRLPIYNYLFEPKMKFL--ARCKPKK 506 (733)
Q Consensus 463 lEdr~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~i~pse 506 (733)
|||||||+||+++++.| +..++.++++ ||+.||+
T Consensus 240 lEDriVK~~f~~~~~~~----------~~~~~~~~~~~~k~i~ps~ 275 (296)
T PRK00050 240 LEDRIVKRFFRELSKGC----------CGNKPKLKLLTKKPIKPSE 275 (296)
T ss_pred HHHHHHHHHHHHhcccc----------cccCCceEEcCCCCcCCCH
Confidence 99999999999987653 2233446666 7899885
No 5
>KOG2782|consensus
Probab=100.00 E-value=9.3e-69 Score=518.99 Aligned_cols=247 Identities=34% Similarity=0.509 Sum_probs=233.9
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc----CCCcEEEEccCcc
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI----TDSRFSIIHNCFT 300 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l----~~~r~~~~~~~f~ 300 (733)
.|||+.|+++.+.| .+++.|+|||||.||||+.||++. ++.++|++|+||-|.+.|.-+ -.++++.+.+||+
T Consensus 28 VPVm~devl~~lsp---v~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs 103 (303)
T KOG2782|consen 28 VPVMLDEVLDILSP---VRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFS 103 (303)
T ss_pred CceehhhHHHHcCC---CCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhH
Confidence 59999999999999 899999999999999999999997 779999999999999998433 2567888999999
Q ss_pred chHHHHHhCCC--CcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCc
Q psy2380 301 ELDIILKKYNI--KKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEER 378 (733)
Q Consensus 301 ~~~~~l~~~~~--~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~ 378 (733)
++++++++.|+ ..|||||||||+||||+|+|+||||-.+|||||||||.....+|.+++|+++|.||.+|+|.||||+
T Consensus 104 ~~~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpLDMRMDgg~s~g~~~~~~~~~e~~l~rvlr~ygee~ 183 (303)
T KOG2782|consen 104 YIKSLIADTGLLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPLDMRMDGGASLGAEDIVNSWPESELGRVLRDYGEES 183 (303)
T ss_pred HHHHHHHHhCCCcCCcceEEeecCccccccCCccccceeeccCCcceeecCCCccceeeeecccchhhHHHHHHHhhhhh
Confidence 99999999887 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHHHHHHhhcCCCCC----CCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCe
Q psy2380 379 FAKKIAKEIVHYRSITPITRTKQLVEIILKSIRGNKR----YKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGR 454 (733)
Q Consensus 379 ~~~~ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~~~----~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~ 454 (733)
.|++|++.||++|-...++||.||+++|+..-|.++- -.|.|||+||++||+|||||++++..+--+.+.|.||||
T Consensus 184 ~~~~l~~~iv~ar~~~~l~st~~l~dli~~~~~~~r~~~~~~~~tatk~fqg~ri~vnnel~~~~~~~~l~~~vl~~~gr 263 (303)
T KOG2782|consen 184 NWYLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQGWIKTATKVFQGLRIAVNNELKTLQNSLYLSFDVLAPGGR 263 (303)
T ss_pred HHHHHHhhhHHhhhccccccchhHHHHhccCCccccccccccccccchhhhhHHHHhhhhhhhccCceeccccccCCCcc
Confidence 9999999999999999999999999999998876432 479999999999999999999999999999999999999
Q ss_pred EEEEeccchhhhHHHHHHHhc
Q psy2380 455 IVVISFHSLEDRIVKNFINFN 475 (733)
Q Consensus 455 l~visfhSlEdr~vk~~~~~~ 475 (733)
+++|||||||||+||+.|...
T Consensus 264 l~~isfhSLed~vvkr~~~~i 284 (303)
T KOG2782|consen 264 LAVISFHSLEDRVVKRTFLDI 284 (303)
T ss_pred EEEEEhhhHHHHHHHHHHhhh
Confidence 999999999999999999875
No 6
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=100.00 E-value=5.9e-56 Score=461.73 Aligned_cols=219 Identities=35% Similarity=0.519 Sum_probs=201.1
Q ss_pred cccccccccCccccCCCCCcceeec-CCCCccEEEEEEeCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHH
Q psy2380 500 ARCKPKKKLNIKKYEDYCPNGLQVE-GRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLE 578 (733)
Q Consensus 500 ~~i~pse~~~~~~~~~wdn~Gl~~~-~~~~v~~I~~ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~ 578 (733)
+.+.|.+++ ++|||+|||+| ++++|++|++|+|+|++|+++|+++||||||||||+||+|.++...+...++++
T Consensus 11 e~~~p~~~a-----~~wDn~Gl~vg~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~ 85 (249)
T TIGR00486 11 NRFLPKELA-----EDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLK 85 (249)
T ss_pred HHhCCHHHh-----cCCCCCeeEecCCCcccCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHH
Confidence 445565543 68999999998 789999999999999999999999999999999999999987765543433399
Q ss_pred HHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCc
Q psy2380 579 QLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKP 658 (733)
Q Consensus 579 ~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~ 658 (733)
+|+||||+|||+|||||.+++ |+|++||+.|||++.+++++.|+|++|+ +++|+|++||++++|++|+.+.
T Consensus 86 ~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~g~G~vg~--------l~~~~~~~~~~~~vk~~l~~~~ 156 (249)
T TIGR00486 86 ILLQNDISLYSAHTNLDAHDG-GNNDALARALGLENPKEFEDYGLGRVGE--------FKAPIESLEEVLEIKKVLNVKP 156 (249)
T ss_pred HHHHCCCeEEEeecchhcCCC-CHHHHHHHHcCCCccccccCCCceeEEE--------CCCCCCHHHHHHHHHHHhCCCC
Confidence 999999999999999999984 9999999999999988887778999999 8889999999999999999999
Q ss_pred EEe-CCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhhHhhHhhhhcC
Q psy2380 659 IVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNREL 732 (733)
Q Consensus 659 v~~-~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE~~g~~~la~~ 732 (733)
+|+ ++.+++|+|||+|+|||++++++|.++|||+|||||+|||++++|+++|+++|++|||+||++||+.|+++
T Consensus 157 vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h~~~~A~~~gi~li~~gH~~sE~~~~~~la~~ 231 (249)
T TIGR00486 157 LLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAHLARELGLNVIDAGHYATERGGLRKLMED 231 (249)
T ss_pred EEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCchHHHHHHHHCCCEEEEcCcHHHHHHHHHHHHHH
Confidence 998 56678999999999999999999999999999999999999999999999999999999999999999875
No 7
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=100.00 E-value=3.8e-56 Score=461.41 Aligned_cols=218 Identities=28% Similarity=0.461 Sum_probs=193.0
Q ss_pred ccccccccCccccCCCCCcceeec-CCCCccEEEEEEeCCHHHHHHHHHCCCCEEEeccCCCccCCccccc-ChHHHHHH
Q psy2380 501 RCKPKKKLNIKKYEDYCPNGLQVE-GRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIV-GIKKKRLE 578 (733)
Q Consensus 501 ~i~pse~~~~~~~~~wdn~Gl~~~-~~~~v~~I~~ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~-~~~~~~~~ 578 (733)
.+.|.+++ |+|||+|||+| ++++|++|++|+|+|++|+++|+++||||||||||+||++.+.... ++++++++
T Consensus 8 ~~~p~~~a-----~~wDn~Gl~vg~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~ 82 (241)
T PF01784_consen 8 ELAPLSLA-----EDWDNVGLQVGDPEQEVKKVLVALDATPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIE 82 (241)
T ss_dssp HHSTGGGS-----TTTS-EEEEES-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHH
T ss_pred HhCCHhHc-----CCCCCCceEECcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHH
Confidence 34455544 79999999997 7899999999999999999999999999999999999999877654 67899999
Q ss_pred HHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccc------cCccceeeeecccccccCCCCCHHHHHHHHHh
Q psy2380 579 QLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK------NNIGWIGKIINLKRYNFKKIITIKDLFHHITR 652 (733)
Q Consensus 579 ~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~------~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~ 652 (733)
++++|||+||++|||||.+++ |+|++||+.|||++.+++++ .|+|++|+ +++|+|++||++++|+
T Consensus 83 ~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~~~~~~~g~g~i~~--------l~~~~s~~el~~~vk~ 153 (241)
T PF01784_consen 83 KLIKNGISVYSAHTNLDAAPG-GVNDYLAKKLGLENIKPLDPSKSGEGYGLGRIGE--------LPEPMSLEELAERVKE 153 (241)
T ss_dssp HHHHTT-EEEEESHHHHHSTT-SHHHHHHHHHTEEEEEEEEEEEEEEEEECEEEEE--------EEEEEEHHHHHHHHHH
T ss_pred HHHHCCCEEEEecccccccCc-CHHHHHHHHhCCCCccccccccccccceeeeEee--------cCCCCCHHHHHHHHHH
Confidence 999999999999999999985 99999999999999888763 47999999 9988999999999999
Q ss_pred HcCCCcEEeC-CCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhhHhhHhhhhc
Q psy2380 653 KIGKKPIVIG-DLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNRE 731 (733)
Q Consensus 653 ~l~~~~v~~~-~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE~~g~~~la~ 731 (733)
+|+.+.+|+. +.+++|+|||+|+|||++++++|.+.|||+|||||++||++++|.++|+++|++|||+||++||+.|++
T Consensus 154 ~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~gH~~sE~~~~~~l~~ 233 (241)
T PF01784_consen 154 KLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAGHYASERPGMEALAE 233 (241)
T ss_dssp HTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE--HHHHGGHHHHHHHH
T ss_pred HcCCCcEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcCCHHHHHHHHHHHHH
Confidence 9999999994 778999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy2380 732 L 732 (733)
Q Consensus 732 ~ 732 (733)
+
T Consensus 234 ~ 234 (241)
T PF01784_consen 234 W 234 (241)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>PRK10799 metal-binding protein; Provisional
Probab=100.00 E-value=3.5e-54 Score=447.86 Aligned_cols=218 Identities=46% Similarity=0.788 Sum_probs=200.3
Q ss_pred ccccCccccCCCCCcceeecCCCCccEEEEEEeCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcC
Q psy2380 505 KKKLNIKKYEDYCPNGLQVEGRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINK 584 (733)
Q Consensus 505 se~~~~~~~~~wdn~Gl~~~~~~~v~~I~~ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~ 584 (733)
.+++++..+++|||+|||+++.++|++|++|+|+|++|+++|+++||||||||||+||++.+....++++++++++++|+
T Consensus 11 ~~~~~~~~~~~wd~~Gl~v~~~~~v~~I~~alD~t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~ 90 (247)
T PRK10799 11 NEKLNSAAISDYAPNGLQVEGRETVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLAND 90 (247)
T ss_pred HhhcCHhhhccCCCceeEeCCcccccEEEEEeCCCHHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHHHCC
Confidence 36677777899999999998778999999999999999999999999999999999999987766678899999999999
Q ss_pred CeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCC
Q psy2380 585 INLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDL 664 (733)
Q Consensus 585 I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~ 664 (733)
|+||++|||||.++++|+|++||+.|||++.... .++|.+|+ +++++|++||++++|++|+.+.+.+++.
T Consensus 91 i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~--~~~~~~g~--------l~~~~s~~~l~~~vk~~l~~~~~~~~~~ 160 (247)
T PRK10799 91 INLYGWHLPLDAHPELGNNAQLAALLGITVMGEI--EPLVPWGE--------LTMPVPGLELASWIEARLGRKPLWCGDT 160 (247)
T ss_pred CeEEEEecchhhCCCCCHHHHHHHHcCCCcccCc--CCceeeEE--------CCCCcCHHHHHHHHHHHhCCCeEEECCC
Confidence 9999999999999756999999999999976443 36888888 8889999999999999999997656654
Q ss_pred -CCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhhHhhHhhhhcC
Q psy2380 665 -NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNREL 732 (733)
Q Consensus 665 -~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE~~g~~~la~~ 732 (733)
+++|+|||+|+|||++++++|.+.|||+|||||+|||++++|.++|+++|++|||+||++||+.|+++
T Consensus 161 ~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~h~~~~A~~~gl~li~~GH~~sE~~~~~~la~~ 229 (247)
T PRK10799 161 GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEW 229 (247)
T ss_pred CCCcccEEEEECCchHHHHHHHHHcCCCEEEECCcchHHHHHHHHCCCeEEEcCchHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999874
No 9
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-49 Score=411.00 Aligned_cols=218 Identities=35% Similarity=0.514 Sum_probs=198.2
Q ss_pred cccCccccCCCCCcceeecC-CCCccEEEEEEeCCHHHHHHHHHCCCCEEEeccCCCccCCccc-ccChHHHHHHHHHhc
Q psy2380 506 KKLNIKKYEDYCPNGLQVEG-RSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIIN 583 (733)
Q Consensus 506 e~~~~~~~~~wdn~Gl~~~~-~~~v~~I~~ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~-~~~~~~~~~~~l~~~ 583 (733)
+.+++..++||||+|||+++ +++|++|++|||+|++++++|++.+||+||+|||++|.+.+.. .++++++++++|++|
T Consensus 12 ~~~p~~~a~d~d~~GLqv~~~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~ 91 (250)
T COG0327 12 EFLPPELAEDWDNNGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQN 91 (250)
T ss_pred hhcCHHHhhccCcceEEeCCCCcccceEEEEeeCCHHHHHHHHHCCCCEEEEcCchhcCCCccccccchHHHHHHHHHhC
Confidence 44455555799999999985 8999999999999999999999999999999999888776654 457899999999999
Q ss_pred CCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCC
Q psy2380 584 KINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGD 663 (733)
Q Consensus 584 ~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~ 663 (733)
+|++|++|||+|.++ .|.|+++++.+++....+..+.++|++|+ +++++|+++|++++++.|+.+.+++++
T Consensus 92 ~I~ly~~HtnlD~~~-~g~N~a~~~~l~~~~~~~~~~~~~g~~g~--------~~~~~~l~~l~~~i~~~l~~~~~~~~~ 162 (250)
T COG0327 92 DINLYAAHTNLDAHP-EGGNDALAAALLGAEELPPFGEGLGRVGE--------LKEPTTLEELAERIKAKLGRPPLRVVK 162 (250)
T ss_pred CCeEEEccccccccc-ccccHHHHHHhcCcccccccccccceEEE--------eCCCCCHHHHHHHHHHHcCCCCEEEcc
Confidence 999999999999997 58899999988888766654468999999 999999999999999999999999864
Q ss_pred -CCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhhHhhHhhhhcC
Q psy2380 664 -LNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNREL 732 (733)
Q Consensus 664 -~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE~~g~~~la~~ 732 (733)
.++.|+|||+|+|||.+++++|.+.|+|+|||||++||++++|+++|+++|++|||+||++|++.++++
T Consensus 163 ~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~~~a~e~gi~~i~~gH~~tE~~g~~~l~~~ 232 (250)
T COG0327 163 DGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTAHDARELGLSVIDAGHYATERPGLKALAEL 232 (250)
T ss_pred CccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHHHHHHHCCCeEEecCchHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999988764
No 10
>KOG4131|consensus
Probab=100.00 E-value=2e-39 Score=317.95 Aligned_cols=203 Identities=22% Similarity=0.300 Sum_probs=180.8
Q ss_pred CCCCCcceeec---CCCCccEEEEEEeCCHHHHHHHHHCCCCEEEeccCCCccCCccccc-ChHHHHHHHHHhcCCeEEE
Q psy2380 514 EDYCPNGLQVE---GRSNINVIVTGVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIV-GIKKKRLEQLIINKINLYA 589 (733)
Q Consensus 514 ~~wdn~Gl~~~---~~~~v~~I~~ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~-~~~~~~~~~l~~~~I~vy~ 589 (733)
++|||+||+++ +.+.+++|+++.|+|..|.|||++++|+.|+++||++|++.+++.. .++.+++.+|++|||++||
T Consensus 27 ~sWDNvGLLve~p~~~~~k~kVlLT~DLTe~V~eEa~ek~~e~IvAYHP~IFr~~krIt~~~~~e~~vi~~~~ngiavyS 106 (272)
T KOG4131|consen 27 ESWDNVGLLVEKPSGSRKKKKVLLTNDLTESVAEEALEKNAESIVAYHPPIFRPLKRITKSYPQERKVIKAIANGIAVYS 106 (272)
T ss_pred hcccccceEeecCCCccccceeeEeccchHHHHHHHHHhCCceeEeecCccccchhhhcccchHHHHHHHHHhcCceeec
Confidence 69999999997 4678999999999999999999999999999999999999987754 5778999999999999999
Q ss_pred ecCCCCCCCCCCHHHHHHHHhccCccccccc---------cCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEE
Q psy2380 590 YHLPLDMHPKLGNNAQLAKILNFSCTRRFSK---------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIV 660 (733)
Q Consensus 590 ~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~---------~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~ 660 (733)
+||.+|.+. +|+|+|+++.++-...+++++ .|+||+.+ .+.++++.|+++++|+ +++.+|
T Consensus 107 PHtA~Daa~-~gVNdwls~gIN~~~~~p~~~t~~gp~~~~~G~gr~~e--------~~~~~~~~~~l~~ik~--~l~~v~ 175 (272)
T KOG4131|consen 107 PHTAVDAAG-GGVNDWLSKGINANLSRPNDPTKNGPMEETIGYGREEE--------TKINLNVVEILKRIKR--GLSSVR 175 (272)
T ss_pred chhhhcccc-cchhHHHHHhhhhhhcCCccccccCCCcccccccceee--------ccCcccHHHHHHHHHh--cCCeEE
Confidence 999999986 899999999999444444322 57899988 7788999999999988 788888
Q ss_pred eC----C-CCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhhHhhHhhhh
Q psy2380 661 IG----D-LNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATERYDKSPNR 730 (733)
Q Consensus 661 ~~----~-~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE~~g~~~la 730 (733)
+. . .+..|++||+|+|||+++++. .++|+|||||++||+.++|.++|+++|.++|.+|||.++..+.
T Consensus 176 val~~g~~~~~~i~~V~vcAgsg~svlk~---~~adly~TGEmSHH~vL~~~~~g~sVilc~HSNtERgfL~d~~ 247 (272)
T KOG4131|consen 176 VALAVGHTLESQIKKVAVCAGSGSSVLKG---VDADLYITGEMSHHDVLDAAANGISVILCEHSNTERGFLSDLC 247 (272)
T ss_pred EeeccCCccccceeEEEEeeccCcceecc---ccccEEEeccccHHHHHHHHHcCCeEEEecCCCccchhHHHHH
Confidence 83 2 256799999999999999865 5699999999999999999999999999999999999998754
No 11
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=240.83 Aligned_cols=223 Identities=38% Similarity=0.698 Sum_probs=189.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy2380 1 MAFAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSC 80 (733)
Q Consensus 1 La~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~ 80 (733)
|+||+++|+++|+++++|.++|.|...+ |++.++++.+|++++.+.|.+++.++.|++.++|+.++|++.+|++++
T Consensus 194 La~gvl~Gg~~Q~l~~lp~l~~~g~~~~----p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~ 269 (518)
T COG0728 194 LAWGVLIGGLLQLLVQLPALRKAGLLIK----PRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSW 269 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccC----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 5899999999999999999999987653 455677799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh-----------------------------------
Q psy2380 81 LSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW----------------------------------- 125 (733)
Q Consensus 81 l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~----------------------------------- 125 (733)
++||+|++|+|+|+++++++|+++|++|++.+++|+.++++.++|
T Consensus 270 l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~ 349 (518)
T COG0728 270 LYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTA 349 (518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCh
Confidence 999999999999999999999999999999999999999988876
Q ss_pred ---------------------------------------------------------cchhHhHHHHHHHHHHHHHHHHH
Q psy2380 126 ---------------------------------------------------------IPIFAHSGLALSIGLGACLHASF 148 (733)
Q Consensus 126 ---------------------------------------------------------ip~~Gi~GaalAt~is~~v~~iL 148 (733)
+|.+|+.|+|+|++++.++++.+
T Consensus 350 ~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~l 429 (518)
T COG0728 350 EDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALL 429 (518)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999
Q ss_pred HHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHHHHHHHHHhHhh-hhcCcccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2380 149 LYWYLRHKRIYIPCAGWGVF-FIRLVIALLLLVIVALWGNSYFNW-LGMQAHPIFRIVALLLILLFCGITYFLALRIMGF 226 (733)
Q Consensus 149 ~~~~l~r~i~~~~~~~~~~~-~~k~~lAs~iM~ivv~~i~~~l~~-~~~~~~~~~~li~l~i~v~iG~ivY~~ll~ll~p 226 (733)
.++.++|+....+.+.+... ..|..+++++|+.++|....+... +............+.+.+.+++++|+......++
T Consensus 430 l~~~l~k~~~~~~~~~~~~~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~ 509 (518)
T COG0728 430 LYYLLRKRLVYLPGRGWGLFLILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGF 509 (518)
T ss_pred HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987655555433 489999999999999988876641 1110111224455666777788888887777665
Q ss_pred h
Q psy2380 227 L 227 (733)
Q Consensus 227 v 227 (733)
.
T Consensus 510 ~ 510 (518)
T COG0728 510 R 510 (518)
T ss_pred H
Confidence 4
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.87 E-value=1.4e-20 Score=213.05 Aligned_cols=187 Identities=30% Similarity=0.548 Sum_probs=169.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy2380 1 MAFAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSC 80 (733)
Q Consensus 1 La~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~ 80 (733)
+++|+++|+++|++++++..+|.+.++ +|+++++++.+|++++.+.|.++++++.|++.++|+.++|.+++|++++
T Consensus 160 la~g~~~g~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~ 235 (451)
T PF03023_consen 160 LAWGVLIGAIIQFLIQLPYLRRFGFRF----RPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSA 235 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcc----cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH
Confidence 479999999999999999999988764 4556677789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh-----------------------------------
Q psy2380 81 LSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW----------------------------------- 125 (733)
Q Consensus 81 l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~----------------------------------- 125 (733)
++||++++++|+++++++++++++|.+|++.+++|++++++.+++
T Consensus 236 l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~ 315 (451)
T PF03023_consen 236 LNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTA 315 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCH
Confidence 999999999999999999999999999999999999998888763
Q ss_pred ---------------------------------------------------------cchhHhHHHHHHHHHHHHHHHHH
Q psy2380 126 ---------------------------------------------------------IPIFAHSGLALSIGLGACLHASF 148 (733)
Q Consensus 126 ---------------------------------------------------------ip~~Gi~GaalAt~is~~v~~iL 148 (733)
.|.+|..|+++|++++.++.+++
T Consensus 316 ~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~ 395 (451)
T PF03023_consen 316 EDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALL 395 (451)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999
Q ss_pred HHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy2380 149 LYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFN 191 (733)
Q Consensus 149 ~~~~l~r~i~~~~~~~~~~~~~k~~lAs~iM~ivv~~i~~~l~ 191 (733)
.++.++|+.+....+.+.....+..+++.+|+.+++++...+.
T Consensus 396 l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (451)
T PF03023_consen 396 LYILLRRRLGLFSFRKILLFLLKILLASALMAVILLLLKQLFQ 438 (451)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998766677777777778888999988888776553
No 13
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=3.3e-18 Score=195.73 Aligned_cols=224 Identities=31% Similarity=0.436 Sum_probs=188.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCL 81 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l 81 (733)
++|+++|.++++++++++++|.+.++ +|+++++.+.+|+++++++|.++++++.+++..+|+.+.+.++.+++++|
T Consensus 186 ~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~ 261 (502)
T TIGR01695 186 AIGVLIGGVAQLLIQLPFLRKAGFLL----KPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSAL 261 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcc----cCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 37888999999999888887755332 34444455789999999999999999999999999999887788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh------------------------------------
Q psy2380 82 SYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW------------------------------------ 125 (733)
Q Consensus 82 ~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~------------------------------------ 125 (733)
++|+++.++|.++++.+++++++|.+|+.+.++|++++++.+.+
T Consensus 262 ~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~ 341 (502)
T TIGR01695 262 YYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEE 341 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 99999999999888899999999999999999999987766642
Q ss_pred --------------------------------------------------------cchhHhHHHHHHHHHHHHHHHHHH
Q psy2380 126 --------------------------------------------------------IPIFAHSGLALSIGLGACLHASFL 149 (733)
Q Consensus 126 --------------------------------------------------------ip~~Gi~GaalAt~is~~v~~iL~ 149 (733)
+|.+|..|+++|+++++++.+++.
T Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~ 421 (502)
T TIGR01695 342 DTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLL 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999
Q ss_pred HHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy2380 150 YWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIMGFLFL 229 (733)
Q Consensus 150 ~~~l~r~i~~~~~~~~~~~~~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~l~i~v~iG~ivY~~ll~ll~pvll 229 (733)
++.++|+.+......+.+.+.|+++++++|+++++........ .....+++.+++.+++|+++|++++++++...+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~as~~m~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~g~~vY~~~~~~~~~~~~ 497 (502)
T TIGR01695 422 YLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYLIVSVSLG----GVLVKNLLGLLAIGLIGLLVYFLGLALLKIEEL 497 (502)
T ss_pred HHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 9999999865445667888999999999999998866542100 001356788999999999999999999998888
Q ss_pred HHHH
Q psy2380 230 NEAI 233 (733)
Q Consensus 230 ~Evl 233 (733)
+|+.
T Consensus 498 ~~~~ 501 (502)
T TIGR01695 498 NLLL 501 (502)
T ss_pred HHhh
Confidence 8765
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.74 E-value=2.1e-16 Score=180.79 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=172.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQM-REGSLSC 80 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l-~~g~v~~ 80 (733)
++|.+++.+++.++.++..+| . ++|++.++.+.+|++++++.|.++++++.+++..+|+.+.+.+ +++++|+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~-~------~~~~~~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~ 245 (492)
T PRK10459 173 ILGYLVNSSVRTLLFGYFGRK-I------YRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGG 245 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-c------CCccceecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhh
Confidence 345556666555444433322 1 2333334457899999999999999999999999999997654 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh-----------------------------------
Q psy2380 81 LSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW----------------------------------- 125 (733)
Q Consensus 81 l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~----------------------------------- 125 (733)
|+.|+++.++|.++++.+++++++|.+|+. ++|.+++++.+.+
T Consensus 246 Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~~~~a 323 (492)
T PRK10459 246 YNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKWNSA 323 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChhHHhH
Confidence 999999999999998888999999999985 5677776665542
Q ss_pred --------------------------------------------cch-------hHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2380 126 --------------------------------------------IPI-------FAHSGLALSIGLGACLHASFLYWYLR 154 (733)
Q Consensus 126 --------------------------------------------ip~-------~Gi~GaalAt~is~~v~~iL~~~~l~ 154 (733)
+|. +|+.|+++|+++++.+.++++++.+.
T Consensus 324 ~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 324 IPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 49999999999999999999999885
Q ss_pred H-HhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy2380 155 H-KRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFLALRIMGFLFLNEAI 233 (733)
Q Consensus 155 r-~i~~~~~~~~~~~~~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~l~i~v~iG~ivY~~ll~ll~pvll~Evl 233 (733)
| ..+.. ...+.+.+.|+++++++|+++++.+...... .....+.+++.+++|+++|+..+++++...++|+.
T Consensus 404 ~~~~~~~-~~~~~~~~~~~~~a~~~m~~~~~~~~~~~~~------~~~~~~~l~~~~~~g~~~Y~~~~~~~~~~~~~~~~ 476 (492)
T PRK10459 404 KPVIGLS-YRQYILSIWKPFYLSLPMLIVSYGLGLLLKG------HLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVK 476 (492)
T ss_pred HHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 5 55554 3456788999999999999998877654321 12346788899999999999999999998899998
Q ss_pred hhhhc
Q psy2380 234 NWLNI 238 (733)
Q Consensus 234 ~~L~~ 238 (733)
+.++.
T Consensus 477 ~~~~~ 481 (492)
T PRK10459 477 RQFCR 481 (492)
T ss_pred HHHHh
Confidence 88765
No 15
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.42 E-value=2e-11 Score=139.18 Aligned_cols=206 Identities=16% Similarity=0.148 Sum_probs=144.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCc-ccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c------
Q psy2380 3 FAVVLGGALQIIIQIPSLIKIGM-FPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQM-R------ 74 (733)
Q Consensus 3 ~G~~~G~v~qll~l~~~l~r~g~-~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l-~------ 74 (733)
+|++++.++++++++++++|... +++..+........+.+|+++++++|.++++...+++..+|+.+.+.. .
T Consensus 184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~ 263 (488)
T TIGR02900 184 LSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTY 263 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34455666777767666554322 211111100111235789999999999999999999999999987643 1
Q ss_pred c---hhHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh-------------------------
Q psy2380 75 E---GSLSCL-SYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW------------------------- 125 (733)
Q Consensus 75 ~---g~v~~l-~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~------------------------- 125 (733)
. +.+|.| +.+.++.++|. .+..++++++.|.+|+...++|.+++++..++
T Consensus 264 ~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 342 (488)
T TIGR02900 264 REATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGA 342 (488)
T ss_pred HHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234444 36788999995 66899999999999999999998887766642
Q ss_pred -----------------------------------------------------------c--chhHhHHHHHHHHHHHHH
Q psy2380 126 -----------------------------------------------------------I--PIFAHSGLALSIGLGACL 144 (733)
Q Consensus 126 -----------------------------------------------------------i--p~~Gi~GaalAt~is~~v 144 (733)
+ |.+|..|+++|+++++++
T Consensus 343 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~ 422 (488)
T TIGR02900 343 LFYGRPDAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVL 422 (488)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3 788999999999999999
Q ss_pred HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHHHHHHHHHHHHHHHH
Q psy2380 145 HASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLILLFCGITYFL 219 (733)
Q Consensus 145 ~~iL~~~~l~r~i~~~~~~~~~~~~~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~l~i~v~iG~ivY~~ 219 (733)
.++++++.++|..+++.. .+..++++.++.+|.++.+......+ .....+.+++.+.+|+++|+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Y~~ 487 (488)
T TIGR02900 423 VTILNLAEIKKNIRITID---LSDFLIFALLGILVYLGLSLLKYIIF-------NPNILINLLLIIILGFSLYIL 487 (488)
T ss_pred HHHHHHHHHHHHhCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHhc
Confidence 999999999998876422 45555555555554433332221111 013568888999999999975
No 16
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.98 E-value=7.3e-08 Score=109.96 Aligned_cols=118 Identities=20% Similarity=0.307 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHcC-cccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIG-MFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQM-REGSLS 79 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g-~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l-~~g~v~ 79 (733)
.++...|.+....+....+++.. ... ++..+...+.+|++++.++|..+++....+++.+|+.+.+.+ ++.++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG 250 (480)
T COG2244 175 VWALVLGAVVSLLVLLILLGKKKRGLK----RPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVG 250 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc----ccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhe
Confidence 35677777777777666654222 121 122121247899999999999999999999999999999865 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhh
Q psy2380 80 CLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILD 124 (733)
Q Consensus 80 ~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~ 124 (733)
.|+.++++.+++. ++..+++++++|.+|++.+++|+++.++..+
T Consensus 251 ~Y~~a~~i~~~~~-~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~ 294 (480)
T COG2244 251 IYSAAQRLVSLLL-IVASALNRVLFPALSRAYAEGDRKALKKLLR 294 (480)
T ss_pred ecccccHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9998899988885 5689999999999999999999998655554
No 17
>PRK15099 O-antigen translocase; Provisional
Probab=98.82 E-value=1.2e-07 Score=106.54 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhHHHH
Q psy2380 3 FAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIAS-QMREGSLSCL 81 (733)
Q Consensus 3 ~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias-~l~~g~v~~l 81 (733)
++++++..+..++.+++++|... .+.+. .+..++.+.+|+++++++|.++++...++...+|+.+++ .++..++|+|
T Consensus 177 iat~i~~~i~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y 254 (416)
T PRK15099 177 LGLALVPALVVLPAGIMLIRRGT-IPLSY-LKPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIW 254 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc-eehHh-hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHH
Confidence 44555555555454544544322 11111 111233367999999999999999999999999999996 6688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhh
Q psy2380 82 SYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILD 124 (733)
Q Consensus 82 ~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~ 124 (733)
+.|+|+.+.+..++..+++++++|.+|++ +|.++.++.+.
T Consensus 255 ~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~ 294 (416)
T PRK15099 255 QGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIV 294 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 99999999776677899999999999985 45666655553
No 18
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.76 E-value=2.5e-07 Score=100.41 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCL 81 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l 81 (733)
++|++++.++++++++++++|. .+.+.+|+++..++.+.+|+++++++|.++++...++...+|+.+.+.+++++++.|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~ 254 (342)
T TIGR00797 176 ALATVISYWLMFLLLLYYIKKA-KKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAH 254 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 5678888888888887777652 222222223333445789999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 82 SYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 82 ~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
+.+.++.+++. .+..++++++.|.+++.+.++|.+++++.+++
T Consensus 255 ~~a~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
T TIGR00797 255 QIALNVESLLF-MPAFGFGIAVSILVGQALGAGDPKRAKEVARV 297 (342)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999885 56799999999999999999999999988875
No 19
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.61 E-value=2.2e-06 Score=81.47 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=81.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHH
Q psy2380 126 IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVA 205 (733)
Q Consensus 126 ip~~Gi~GaalAt~is~~v~~iL~~~~l~r~i~~~~~~~~~~~~~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~ 205 (733)
+|.+|..|+++|+.+++++.++++.+.++|+.+.+ .++.+...++++++++|+++++....++.... +. ..+++..
T Consensus 50 i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 125 (146)
T PF14667_consen 50 IPRFGIYGAAIATAISEIVSFILNLWYVRKKIGIK--INWRRSLIKPILASIVMAIVLYILNSLLPNIF-PS-RLSSLLQ 125 (146)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hhhHHHH
Confidence 78999999999999999999999999999999886 55677899999999999999998887764221 11 2357888
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy2380 206 LLLILLFCGITYFLALRIMG 225 (733)
Q Consensus 206 l~i~v~iG~ivY~~ll~ll~ 225 (733)
+++.+.+|+++|+.+++.++
T Consensus 126 l~~~~~i~~~~y~~~~~~~~ 145 (146)
T PF14667_consen 126 LLIGIIIGGIVYLLLLLLLK 145 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888765
No 20
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.57 E-value=5.4e-06 Score=94.52 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHH
Q psy2380 40 IAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEY 119 (733)
Q Consensus 40 ~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~ 119 (733)
+..|+++++++|.++++...++++++|+.++|.+++.++++...|..+..++.++ ...+++..-+.+|+++-+||+++.
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~-~~gl~~g~~~liaq~~Ga~~~~~~ 92 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAI-FIGLGTGTTVLVAQAIGAGDRKKA 92 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHcCCchHHH
Confidence 4789999999999999999999999999999999988999999999999999874 699999999999999999999998
Q ss_pred HHHhhh--------------------------------------------------------------------------
Q psy2380 120 SAILDW-------------------------------------------------------------------------- 125 (733)
Q Consensus 120 ~~~l~~-------------------------------------------------------------------------- 125 (733)
++..++
T Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~ 172 (455)
T COG0534 93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL 172 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 887763
Q ss_pred --------------c-ch---hHhHHHHHHHHHHHHHHHHHHHHHHHHHhc---c------cCchhhHHHHHHHHHHHHH
Q psy2380 126 --------------I-PI---FAHSGLALSIGLGACLHASFLYWYLRHKRI---Y------IPCAGWGVFFIRLVIALLL 178 (733)
Q Consensus 126 --------------i-p~---~Gi~GaalAt~is~~v~~iL~~~~l~r~i~---~------~~~~~~~~~~~k~~lAs~i 178 (733)
+ -. +|+.|+|+||+++.++.+++.++++.|+-. . +.+....+.+.+..+.+.+
T Consensus 173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~ 252 (455)
T COG0534 173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL 252 (455)
T ss_pred HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence 0 12 899999999999999999999888887642 1 3344456677777666666
Q ss_pred HHHH
Q psy2380 179 LVIV 182 (733)
Q Consensus 179 M~iv 182 (733)
+-..
T Consensus 253 ~~~~ 256 (455)
T COG0534 253 ESLS 256 (455)
T ss_pred HHHH
Confidence 6543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.52 E-value=8.4e-06 Score=92.66 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHH
Q psy2380 39 NIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEE 118 (733)
Q Consensus 39 ~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~ 118 (733)
.+.+|+++++++|.++++.+.+++.++|+.+++.+++.++++++.+.++..+... +...++++..|.+|+++.++|+++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~-~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVIL-FGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHH
Confidence 4679999999999999999999999999999999888889999999998766644 578899999999999999999999
Q ss_pred HHHHhh
Q psy2380 119 YSAILD 124 (733)
Q Consensus 119 ~~~~l~ 124 (733)
.++.++
T Consensus 87 ~~~~~~ 92 (456)
T PRK01766 87 IAHQVR 92 (456)
T ss_pred HHHHHH
Confidence 877775
No 22
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.49 E-value=7.3e-08 Score=90.97 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=41.3
Q ss_pred EEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHHHHhCCCCcccEEEEcCCCC
Q psy2380 270 RLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGIS 324 (733)
Q Consensus 270 ~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLGvs 324 (733)
||||||+|++|++.+ +||+ .+|+++++++|++|++++++ .++|+++|||||=
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~---~~v~~~iFNLGYL 57 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE---GPVDAAIFNLGYL 57 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-----EEEEEEEESB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc---CCcCEEEEECCcC
Confidence 699999999999999 4774 36999999999999999986 4799999999984
No 23
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.44 E-value=1.8e-05 Score=90.19 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHH
Q psy2380 40 IAVRRILKKMGPSVFSVFAAQISLMLNTNIASQM-REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEE 118 (733)
Q Consensus 40 ~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l-~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~ 118 (733)
+..|+++++++|.++++++.+++.++|+.+.+.+ ++.++++++.+.++.++..+ +...+++..-|..|++..++|+++
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~-~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILG-IGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHhcCCCHHH
Confidence 5789999999999999999999999999999985 77789999999999998876 467787777789999999999999
Q ss_pred HHHHhh
Q psy2380 119 YSAILD 124 (733)
Q Consensus 119 ~~~~l~ 124 (733)
.++..+
T Consensus 88 ~~~~~~ 93 (453)
T PRK09575 88 AKRILT 93 (453)
T ss_pred HHHHHH
Confidence 887775
No 24
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.41 E-value=2.5e-05 Score=89.33 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHH
Q psy2380 39 NIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEE 118 (733)
Q Consensus 39 ~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~ 118 (733)
.+.+|+++++++|.+++++..++..++|+.+.+.+++.+++++..+.++.++... +...+++.+-|.+|+.+.++|.++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~-~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSI-FCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChhh
Confidence 3679999999999999999999999999999999988899999999999988765 468899999999999999999999
Q ss_pred HHHHhh
Q psy2380 119 YSAILD 124 (733)
Q Consensus 119 ~~~~l~ 124 (733)
.++...
T Consensus 85 ~~~~~~ 90 (464)
T PRK00187 85 ATRLAQ 90 (464)
T ss_pred HHHHHH
Confidence 887775
No 25
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.37 E-value=5.7e-05 Score=86.71 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHH
Q psy2380 40 IAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEY 119 (733)
Q Consensus 40 ~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~ 119 (733)
..+|+++++++|.++++.+.+++.++|+.+.+.+++.+++++..+.++.++... +...+++..-|.+|+.+.++|.++.
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~-~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMA-FFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 568999999999999999999999999999999988899999999999988865 4689999999999999999999997
Q ss_pred HHHhh
Q psy2380 120 SAILD 124 (733)
Q Consensus 120 ~~~l~ 124 (733)
++..+
T Consensus 105 ~~~~~ 109 (478)
T PRK10189 105 RAAAR 109 (478)
T ss_pred HHHHH
Confidence 76664
No 26
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.18 E-value=3.1e-05 Score=88.03 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=93.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcccccc-cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFPHIK-LNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSC 80 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~~~~-~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~ 80 (733)
++|+.++.++++++.+++.+|.......+ +........+.+|+++++++|.++.....++...++..+.+.+++.++++
T Consensus 197 a~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa 276 (456)
T PRK01766 197 GVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAA 276 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 46677777888777776665533110011 11111223367999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhh
Q psy2380 81 LSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILD 124 (733)
Q Consensus 81 l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~ 124 (733)
+..+.++.++... +..++++++-|.++++..+||.++.++...
T Consensus 277 ~~i~~~i~~~~~~-~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~ 319 (456)
T PRK01766 277 HQIALNFSSLLFM-LPLSLAMALTIRVGFELGAGRTLDARQYAY 319 (456)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999998888754 568888888899999999999999887776
No 27
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.17 E-value=0.00018 Score=81.78 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHH
Q psy2380 40 IAVRRILKKMGPSVFSVFAAQISLMLNTNIASQM-REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEE 118 (733)
Q Consensus 40 ~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l-~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~ 118 (733)
+..|+++++++|.++++.+.+++.++|+.+++.+ ++.++++...+.++.++... +...+++..-|.+|+..-+||.++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~-~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFM-LLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4689999999999999999999999999999987 55679999999999888865 467888888999999999999999
Q ss_pred HHHHhh
Q psy2380 119 YSAILD 124 (733)
Q Consensus 119 ~~~~l~ 124 (733)
.++...
T Consensus 85 ~~~~~~ 90 (441)
T PRK10367 85 LARALV 90 (441)
T ss_pred HHHHHH
Confidence 887775
No 28
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.03 E-value=0.00011 Score=79.87 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhh
Q psy2380 51 PSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILD 124 (733)
Q Consensus 51 Piil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~ 124 (733)
|.++++.+.+++..+|+.+.+.+++.++++++.|.++..+. ..+..+++++..|.+|+...++|+++.++.++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~ 73 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQ 73 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHH
Confidence 77889999999999999999999888999999999987755 55789999999999999999999998776664
No 29
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.95 E-value=0.00021 Score=75.67 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=61.7
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|++.|.||.|..+++.+++.++|+|+|++++.++.++ +++ -+++++++.+..++... .+++|.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-----~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA-----VPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-----ccCCCEE
Confidence 67889999999999999999999877799999999999999883 443 24678887775543221 1359999
Q ss_pred EEcCCCC
Q psy2380 318 LFDLGIS 324 (733)
Q Consensus 318 l~DLGvs 324 (733)
++|-=+|
T Consensus 145 l~D~Pcs 151 (264)
T TIGR00446 145 LLDAPCS 151 (264)
T ss_pred EEcCCCC
Confidence 9996655
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.94 E-value=8.1e-05 Score=77.28 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHH
Q psy2380 3 FAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQM-REGSLSCL 81 (733)
Q Consensus 3 ~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l-~~g~v~~l 81 (733)
++.+++.++..++.++..+|... . ++ +. .+.+.+|++++.+.|..+++....++..+|+.+.+.+ +..++|.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y 244 (273)
T PF01943_consen 171 LGLVISSLVSLIISLFYLRRKLR-P--RF-SF--FSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIY 244 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-c--cc-cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHH
Confidence 45566677776677766665432 1 11 11 1236899999999999999999999999999998876 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2380 82 SYADRLMEFPTTLLGVTFNTILLPNLSKAR 111 (733)
Q Consensus 82 ~~A~~L~~lP~~i~~~ai~tvllP~lS~~~ 111 (733)
+.|.++.+++.. +..++.++++|.+|+++
T Consensus 245 ~~a~~l~~~~~~-~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 245 SVAYRLASAISF-LLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 999999999976 57999999999999863
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.90 E-value=5e-05 Score=69.33 Aligned_cols=77 Identities=23% Similarity=0.288 Sum_probs=60.3
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
|..++|...|.|-=+.++++.. ..+++|+|+||++++.++ ++. .+|++++++++.+.. +.....++|.|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP---EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH---HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch---hhccCceeEEEE
Confidence 4579999999999999999885 689999999999999984 442 478999999986654 333346899999
Q ss_pred EcCCCCc
Q psy2380 319 FDLGISS 325 (733)
Q Consensus 319 ~DLGvss 325 (733)
.|.=+..
T Consensus 76 ~npP~~~ 82 (117)
T PF13659_consen 76 TNPPYGP 82 (117)
T ss_dssp E--STTS
T ss_pred ECCCCcc
Confidence 9988754
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.75 E-value=0.00015 Score=71.52 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=90.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
.+++.++|...|.|-=+..++++. ++.+|+++|++++|++.++ +++ -+.+++++++..+ .....++|.|
T Consensus 30 ~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~------~~~~~~fD~I 102 (170)
T PF05175_consen 30 HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE------ALPDGKFDLI 102 (170)
T ss_dssp HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT------TCCTTCEEEE
T ss_pred ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc------cccccceeEE
Confidence 356899999999999999999875 7789999999999999994 443 1228888876533 1112579999
Q ss_pred EEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhccCCCC
Q psy2380 318 LFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPIT 397 (733)
Q Consensus 318 l~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~~~~~ 397 (733)
+.|-=
T Consensus 103 v~NPP--------------------------------------------------------------------------- 107 (170)
T PF05175_consen 103 VSNPP--------------------------------------------------------------------------- 107 (170)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EEccc---------------------------------------------------------------------------
Confidence 98854
Q ss_pred CHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeE-EEEeccchhhhHHHHHHHhc
Q psy2380 398 RTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRI-VVISFHSLEDRIVKNFINFN 475 (733)
Q Consensus 398 tt~~l~~~i~~~~~~~~~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l-~visfhSlEdr~vk~~~~~~ 475 (733)
+ +..--+.++-++++++.+.++|+|||++ .|++-|.-..+++++.|.+.
T Consensus 108 ------------~-----------------~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~~~ 157 (170)
T PF05175_consen 108 ------------F-----------------HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFGDV 157 (170)
T ss_dssp ------------S-----------------BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--
T ss_pred ------------h-----------------hcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcCCE
Confidence 0 0001124567889999999999999999 67788888888889888754
No 33
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=97.74 E-value=0.00078 Score=76.76 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMRE-GSLSC 80 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~-g~v~~ 80 (733)
++++.++.++..++.++++++.....+++. +.++++...+|+++++..|..+......+...+-..+.+.+++ .++++
T Consensus 194 a~At~is~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa 272 (453)
T PRK09575 194 AIATALAQLVVTVLGLGYFFSSRANIRLTL-KELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGA 272 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceeEEee-ccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 456777777777776666554322221111 1122233568999999999999988888877776666665653 46889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 81 LSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 81 l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
+..+.++.++... +..+++++.-|.+++.+-+||.++.++...+
T Consensus 273 ~~i~~~i~~~~~~-~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~ 316 (453)
T PRK09575 273 YAIVGYLMVLYYL-VAEGIAEGMQPPVSYYFGARQYDNIKKLLKL 316 (453)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhHHHHHHHhcCCChHHHHHHHHH
Confidence 9999999888754 5799999999999999999999998887764
No 34
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=97.65 E-value=0.0064 Score=69.47 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCc--ccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGM--FPHIKLNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLS 79 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~--~~~~~~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~ 79 (733)
|++++++-.++.++++++++|... ........+ ++.+.+|+++++.+|..+......+...+-+.+.+.+++..++
T Consensus 200 A~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lA 277 (455)
T COG0534 200 ALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLK--PDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALA 277 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccC--CCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 678888889998888888876542 111011112 2337899999999999999999999888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 80 CLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 80 ~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
+++.+.++.++... ...++++++=|...+..-+||.++.++....
T Consensus 278 a~~i~~~i~~~~~~-~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~ 322 (455)
T COG0534 278 AYGIALRIASFIFM-PPFGIAQAVTILVGQNLGAGNYKRARRAARL 322 (455)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999965 5799999999999999999999998876654
No 35
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=97.65 E-value=0.01 Score=67.95 Aligned_cols=123 Identities=7% Similarity=-0.067 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccccccc-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFPHIKL-NPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSC 80 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~~~~~-rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~ 80 (733)
++++.++..+..+.++++++++....+.+. +....++.+.+|+++++++|..+......+...+|..+++.+++.++++
T Consensus 194 alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa 273 (464)
T PRK00187 194 GLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAA 273 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 455555555555545445543221111111 1111223367999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 81 LSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 81 l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
++.++++..+... +..+++++.-|..++..-+||.++.++..+.
T Consensus 274 ~~i~~~i~~l~~~-~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~ 317 (464)
T PRK00187 274 HQIALQIVSVAFM-VPVGLSYAVTMRVGQHYGAGRLLEARRAGRV 317 (464)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999998754 5799999999999999999999998877654
No 36
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.63 E-value=6e-05 Score=73.49 Aligned_cols=128 Identities=22% Similarity=0.345 Sum_probs=75.8
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCc-ccEEEE
Q psy2380 246 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKK-IDGILF 319 (733)
Q Consensus 246 ~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~-~dgil~ 319 (733)
+++|+|.|.||.+-.+++.. .+|+|+|+||+-++.|+ +.+ ++|+.+++++|.++.. ...... +|.|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~---~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK---RLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG---GB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh---hccccccccEEEE
Confidence 68999999999999999884 47999999999999995 432 5799999999987533 322222 688876
Q ss_pred cCCCCccccCCCCCCcccCCCCCccc--cCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhccCCCC
Q psy2380 320 DLGISSNQINNELRGFSFLLDGPLDM--RMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPIT 397 (733)
Q Consensus 320 DLGvss~q~~~~~rGfs~~~~~pLDm--Rm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~~~~~ 397 (733)
| -|=-|-+|++....|+ .|.+ .+ +.++++. ++++++.|+-.=.+ -.
T Consensus 76 S---------PPWGGp~Y~~~~~fdL~~~~~p---~~------------~~~l~~~------~~~~t~nv~l~LPR--n~ 123 (163)
T PF09445_consen 76 S---------PPWGGPSYSKKDVFDLEKSMQP---FN------------LEDLLKA------ARKITPNVVLFLPR--NS 123 (163)
T ss_dssp ------------BSSGGGGGSSSB-TTTSSSS-----------------HHHHHHH------HHHH-S-EEEEEET--TB
T ss_pred C---------CCCCCccccccCccCHHHccCC---CC------------HHHHHHH------HHhhCCCEEEEeCC--CC
Confidence 4 3445689988888888 4432 23 3333333 66666666554322 24
Q ss_pred CHHHHHHHHHhhcC
Q psy2380 398 RTKQLVEIILKSIR 411 (733)
Q Consensus 398 tt~~l~~~i~~~~~ 411 (733)
...||+++..+...
T Consensus 124 dl~ql~~~~~~l~~ 137 (163)
T PF09445_consen 124 DLNQLSQLTRELFG 137 (163)
T ss_dssp -HHHHHHT----T-
T ss_pred CHHHHHHHhccccC
Confidence 56677766655543
No 37
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.60 E-value=0.00064 Score=69.96 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2380 44 RILKKMGPSVFSVFAAQISLMLNTNIASQ-MREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKA 110 (733)
Q Consensus 44 ~ll~l~iPiil~~~v~qi~~~iD~~ias~-l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~ 110 (733)
+.++.+.|..+++....+++.+|+.+.+. ++..++|.|+.|.++.++|.+++..+++++++|.+|+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999987 67889999999999999998788999999999999973
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.57 E-value=0.00099 Score=67.74 Aligned_cols=83 Identities=13% Similarity=0.257 Sum_probs=62.3
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCccchHHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~~~~~~l~ 307 (733)
.++++.+.. .++..++|...|.|..+..++++.++.++++++|.++++++.++ ++. .+++.++++++.++. .
T Consensus 29 ~~~~~~~~~---~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~- 102 (223)
T TIGR01934 29 RRAVKLIGV---FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP--F- 102 (223)
T ss_pred HHHHHHhcc---CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC--C-
Confidence 344555555 56789999999999999999999854489999999999999984 443 457888888877653 1
Q ss_pred hCCCCcccEEEEc
Q psy2380 308 KYNIKKIDGILFD 320 (733)
Q Consensus 308 ~~~~~~~dgil~D 320 (733)
..+++|.|+..
T Consensus 103 --~~~~~D~i~~~ 113 (223)
T TIGR01934 103 --EDNSFDAVTIA 113 (223)
T ss_pred --CCCcEEEEEEe
Confidence 12468887653
No 39
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.54 E-value=0.0015 Score=69.88 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=56.8
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
+++..++|...|.|..+..++++. ++.+++|+|++++|++.|+ +.. .+|+++++++..+ .++. .++|.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~---~~~~---~~fD~ 192 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA---ALPG---RKYDL 192 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh---ccCC---CCccE
Confidence 345789999999999999999986 6789999999999999984 432 3689999887532 1221 36899
Q ss_pred EEEc
Q psy2380 317 ILFD 320 (733)
Q Consensus 317 il~D 320 (733)
|+.|
T Consensus 193 Iv~N 196 (284)
T TIGR03533 193 IVSN 196 (284)
T ss_pred EEEC
Confidence 9988
No 40
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.40 E-value=0.0028 Score=68.58 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=55.6
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
..++|...|.|..+..+++.. |+.+++|+|++++|++.|+ +.. .+|++++++++.+ .+.. .++|.|+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~~---~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALPG---RRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCCC---CCccEEEE
Confidence 689999999999999999886 7789999999999999984 432 3679999988632 1221 36899998
Q ss_pred c
Q psy2380 320 D 320 (733)
Q Consensus 320 D 320 (733)
|
T Consensus 208 N 208 (307)
T PRK11805 208 N 208 (307)
T ss_pred C
Confidence 8
No 41
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.36 E-value=0.0016 Score=71.27 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=55.9
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|...|.|+.+.+... ...+++|+|+|+++++.|+ +++ -+.+.++++++.++... -+++|.|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~-----~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGL---MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS-----SESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc-----cCCCCEE
Confidence 6788999999999998877543 3578999999999999873 553 13378888888776421 1479999
Q ss_pred EEcCC
Q psy2380 318 LFDLG 322 (733)
Q Consensus 318 l~DLG 322 (733)
+.|-=
T Consensus 253 v~dPP 257 (329)
T TIGR01177 253 ATDPP 257 (329)
T ss_pred EECCC
Confidence 99943
No 42
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.29 E-value=0.0014 Score=59.09 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=59.4
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-cc--C--CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KI--T--DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l--~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
|++.++|.=.|.|..+..++++. +.++++|+|.+|++++.++ +. . .+|++++++++ ... . ...+++|.|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~--~--~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFD--P--DFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGG--T--TTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccC--c--ccCCCCCEE
Confidence 57789999999999999999965 7899999999999999994 55 1 58999999998 211 1 112469999
Q ss_pred EEcC
Q psy2380 318 LFDL 321 (733)
Q Consensus 318 l~DL 321 (733)
+.+.
T Consensus 75 ~~~~ 78 (112)
T PF12847_consen 75 ICSG 78 (112)
T ss_dssp EECS
T ss_pred EECC
Confidence 9887
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.28 E-value=0.0016 Score=65.40 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
+++.++|.-.|.|..+..++... ++++|+|+|.++++++.|+ +.+ -+++++++++..++.. -+++|.|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC------CCCccEEE
Confidence 46889999999999999999875 7899999999999999984 332 2358999998876532 14799998
Q ss_pred E
Q psy2380 319 F 319 (733)
Q Consensus 319 ~ 319 (733)
.
T Consensus 118 ~ 118 (187)
T PRK00107 118 S 118 (187)
T ss_pred E
Confidence 6
No 44
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.25 E-value=0.0011 Score=67.98 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=71.0
Q ss_pred hhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCc
Q psy2380 224 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCF 299 (733)
Q Consensus 224 l~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f 299 (733)
..|.+...+++.+.. +++..++|...|.|..|..+++..+++++|+++|+|+++++.|+ ++. -+++++++++.
T Consensus 61 ~~p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~ 137 (215)
T TIGR00080 61 SAPHMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG 137 (215)
T ss_pred chHHHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc
Confidence 346666777777776 78899999999999999999998877899999999999999984 553 25789998877
Q ss_pred cchHHHHHhCCCCcccEEEEcC
Q psy2380 300 TELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 300 ~~~~~~l~~~~~~~~dgil~DL 321 (733)
.+. +.. ..++|.|++|.
T Consensus 138 ~~~---~~~--~~~fD~Ii~~~ 154 (215)
T TIGR00080 138 TQG---WEP--LAPYDRIYVTA 154 (215)
T ss_pred ccC---Ccc--cCCCCEEEEcC
Confidence 543 111 14799999874
No 45
>PRK10189 MATE family multidrug exporter; Provisional
Probab=97.20 E-value=0.1 Score=60.03 Aligned_cols=123 Identities=8% Similarity=-0.023 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHc-CcccccccCC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKI-GMFPHIKLNP-SHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLS 79 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~-g~~~~~~~rp-~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~ 79 (733)
++|+.++.++..+++++++.+. ....+.+++. ...++.+.+|+++++++|..+.....++...+-..+.+.+++.+++
T Consensus 216 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~A 295 (478)
T PRK10189 216 GLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIA 295 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4566677777766665555432 1111111110 0012236799999999999999888888877777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 80 CLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 80 ~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
++..+.++.++... ...+++++.-|..++..-.||.++.++....
T Consensus 296 a~~I~~~i~~~~~~-~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~ 340 (478)
T PRK10189 296 GNFIAFSIAALINL-PGNALGSASTIITGTRLGKGQIAQAERQLRH 340 (478)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999988754 5789999999999999999999998877654
No 46
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.20 E-value=0.0015 Score=66.33 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=71.0
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCc
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCF 299 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f 299 (733)
.|-+...+++.+.. +++..++|.-.|.|..|..+.+.+++.++|+|+|.++++++.| +++. .++++++++++
T Consensus 57 ~p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 57 APHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG 133 (205)
T ss_pred hHHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence 34455666777776 7788999999999999999998887788999999999999988 4553 35689999887
Q ss_pred cchHHHHHhCCCCcccEEEEcCCC
Q psy2380 300 TELDIILKKYNIKKIDGILFDLGI 323 (733)
Q Consensus 300 ~~~~~~l~~~~~~~~dgil~DLGv 323 (733)
.+. +.. ..++|.|+++...
T Consensus 134 ~~~---~~~--~~~fD~Ii~~~~~ 152 (205)
T PRK13944 134 KRG---LEK--HAPFDAIIVTAAA 152 (205)
T ss_pred ccC---Ccc--CCCccEEEEccCc
Confidence 653 111 2479999998654
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.11 E-value=0.0017 Score=73.64 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=66.3
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|++.|.||-|..+++.++++++|+|+|++++.++.+ ++++ -+++++++.+..++....+ +++|.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~----~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ----DTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh----ccCCEE
Confidence 6788999999999999999999988889999999999999998 3443 2457888887766554333 369999
Q ss_pred EEcCCCCcc
Q psy2380 318 LFDLGISSN 326 (733)
Q Consensus 318 l~DLGvss~ 326 (733)
++|-=+|+.
T Consensus 312 l~DaPCsg~ 320 (431)
T PRK14903 312 LVDAPCTSL 320 (431)
T ss_pred EECCCCCCC
Confidence 999877754
No 48
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=97.09 E-value=0.092 Score=59.76 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHcC-cc-cccc-cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIG-MF-PHIK-LNPSHGFKNIAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSL 78 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g-~~-~~~~-~rp~~~~~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v 78 (733)
++++.++-++.+++.+++++|.. .+ .+.+ +++ ++ .+.+|+++++..|..+.....++...+-..+++.+++.++
T Consensus 191 a~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~al 267 (441)
T PRK10367 191 ALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT--AW-RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDII 267 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh--hh-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 46677777777666666655421 11 1111 111 11 2468999999999999999999988888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 79 SCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 79 ~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
++++.+.++.++..- +..+++++.-|..++.+-.||.++.++....
T Consensus 268 Aa~~I~~~i~~~~~~-~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~ 313 (441)
T PRK10367 268 AVNAVLMTLLTFTAY-ALDGFAYAVEAHSGQAYGARDGSQLLDVWRA 313 (441)
T ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999998864 5799999999999999999999998877654
No 49
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.07 E-value=0.0016 Score=74.06 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=64.1
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|++.|.||.|..+++.++++++++|+|+++++++.++ +++ -+++++++++..++...+. +++|.|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~----~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA----EKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc----ccCCEE
Confidence 67889999999999999999999877899999999999999884 443 1358999998877543332 469999
Q ss_pred EEcCCCC
Q psy2380 318 LFDLGIS 324 (733)
Q Consensus 318 l~DLGvs 324 (733)
+.|--+|
T Consensus 325 l~D~Pcs 331 (444)
T PRK14902 325 LVDAPCS 331 (444)
T ss_pred EEcCCCC
Confidence 9996554
No 50
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.07 E-value=0.0023 Score=65.85 Aligned_cols=86 Identities=20% Similarity=0.402 Sum_probs=67.5
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDII 305 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~ 305 (733)
+++++.+.. ++++.++|.-.|.|.-+..+.+..++.++++|+|.++++++.|+ ++. -+++++++++..++.
T Consensus 35 ~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 109 (231)
T TIGR02752 35 KDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-- 109 (231)
T ss_pred HHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--
Confidence 455666665 67889999999999999999999888899999999999999984 443 257889988876643
Q ss_pred HHhCCCCcccEEEEcCCC
Q psy2380 306 LKKYNIKKIDGILFDLGI 323 (733)
Q Consensus 306 l~~~~~~~~dgil~DLGv 323 (733)
+ ..+++|.|+.++++
T Consensus 110 ~---~~~~fD~V~~~~~l 124 (231)
T TIGR02752 110 F---DDNSFDYVTIGFGL 124 (231)
T ss_pred C---CCCCccEEEEeccc
Confidence 1 12479999876543
No 51
>PRK14968 putative methyltransferase; Provisional
Probab=97.05 E-value=0.0093 Score=58.97 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=53.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCc-EEEEccCccchHHHHHhCCCCccc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSR-FSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r-~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
.+++.++|...|.|..+..+++. ..+++|+|+++++++.++ ++. .++ +.+++.+..+ .+.+ .++|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~---~~~d 92 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRG---DKFD 92 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccc---cCce
Confidence 45779999999999999999987 478999999999999883 432 223 7777765432 1111 2588
Q ss_pred EEEEcCCC
Q psy2380 316 GILFDLGI 323 (733)
Q Consensus 316 gil~DLGv 323 (733)
.|+.|..+
T Consensus 93 ~vi~n~p~ 100 (188)
T PRK14968 93 VILFNPPY 100 (188)
T ss_pred EEEECCCc
Confidence 88877553
No 52
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.02 E-value=0.0036 Score=63.99 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=73.3
Q ss_pred HhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccC
Q psy2380 223 IMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNC 298 (733)
Q Consensus 223 ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~ 298 (733)
...|-+...+++.+.. +++..++|...|.|..|..+.+..+++++|+++|+|++.++.|+ ++. -+++++++++
T Consensus 59 ~~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 59 ISAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred eCcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 4457777888888877 78999999999999999999988877899999999999999984 553 3579999988
Q ss_pred ccchHHHHHhCCCCcccEEEEcCC
Q psy2380 299 FTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 299 f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
..+.. . ...++|.|+++-.
T Consensus 136 ~~~~~---~--~~~~fD~I~~~~~ 154 (212)
T PRK13942 136 GTLGY---E--ENAPYDRIYVTAA 154 (212)
T ss_pred cccCC---C--cCCCcCEEEECCC
Confidence 75432 1 1246999998654
No 53
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.98 E-value=0.0018 Score=62.32 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=61.9
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-cC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-IT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|.-.|.|..+..+++++.++++++|+|.++++++.|++ ++ -+++++++++..++++.++ .++|.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~----~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE----EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS----TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC----CCeeEE
Confidence 467899999999999999999777789999999999999999953 32 3489999999988654321 479999
Q ss_pred EEcC
Q psy2380 318 LFDL 321 (733)
Q Consensus 318 l~DL 321 (733)
+.+.
T Consensus 78 ~~~~ 81 (152)
T PF13847_consen 78 ISNG 81 (152)
T ss_dssp EEES
T ss_pred EEcC
Confidence 8883
No 54
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.92 E-value=0.0047 Score=63.10 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=62.9
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccch---HHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTEL---DIIL 306 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~---~~~l 306 (733)
.|+.+.+.. ++++..++|.-.|.|+.|..+++..++.++|+|+|.++. .++ .+++++++++.+. +++.
T Consensus 40 ~~~~~~~~~--~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----~~~--~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 40 DEIQQSDKL--FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----DPI--VGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred HHHHHHhcc--CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----cCC--CCcEEEecCCCChHHHHHHH
Confidence 344444442 256889999999999999999999888899999999981 122 4589999999884 4555
Q ss_pred HhCCCCcccEEEEcCC
Q psy2380 307 KKYNIKKIDGILFDLG 322 (733)
Q Consensus 307 ~~~~~~~~dgil~DLG 322 (733)
+..+..++|.|+-|..
T Consensus 111 ~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 111 ERVGDSKVQVVMSDMA 126 (209)
T ss_pred HHhCCCCCCEEecCCC
Confidence 5555567888887753
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.92 E-value=0.0042 Score=56.80 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=60.7
Q ss_pred HHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHH
Q psy2380 232 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 232 vl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~ 307 (733)
+++.+.. .++..++|.-.|.|.++..++++. ++++++|+|.++.+++.++ +++ -+++++++++..+......
T Consensus 11 ~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 11 TLSKLRL---RPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 4444444 567799999999999999999987 5589999999999999984 332 2478888877654221111
Q ss_pred hCCCCcccEEEEcC
Q psy2380 308 KYNIKKIDGILFDL 321 (733)
Q Consensus 308 ~~~~~~~dgil~DL 321 (733)
+++|.|+.+.
T Consensus 87 ----~~~D~v~~~~ 96 (124)
T TIGR02469 87 ----PEPDRVFIGG 96 (124)
T ss_pred ----CCCCEEEECC
Confidence 3799998854
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.87 E-value=0.0036 Score=63.19 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=60.0
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.+++.++|...|.|..|.++++..++.++|+++|+++++++.++ +.+ .++++++++++.+. +++.. +++|.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---l~~~~-~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---LFTIN-EKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---HhhcC-CCCCE
Confidence 67899999999999999999988777889999999999999884 332 36788888877543 33321 46899
Q ss_pred EEEcC
Q psy2380 317 ILFDL 321 (733)
Q Consensus 317 il~DL 321 (733)
|+.+.
T Consensus 115 V~~~~ 119 (198)
T PRK00377 115 IFIGG 119 (198)
T ss_pred EEECC
Confidence 88753
No 57
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=96.86 E-value=0.034 Score=63.42 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhh
Q psy2380 46 LKKMGPSVFSVFAAQISLMLNTNIASQ-MREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILD 124 (733)
Q Consensus 46 l~l~iPiil~~~v~qi~~~iD~~ias~-l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~ 124 (733)
++-+.|.++++.+.++...+|+.+.+. +++.+.|.++.+..++.+...+....+++++.+.+|+...++|+++.++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 355789999999999999999999887 4888999999999999888665555789999999999988888887655543
No 58
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.86 E-value=0.02 Score=59.53 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++..++|...|.|..+..+++.. ++.+++|+|.++++++.|+ ++. -+++.++++++.+. ++ -+++|.|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~---~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LP---GGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---Cc---CCceeEEE
Confidence 34689999999999999999886 6789999999999999984 332 24688998887541 11 14689888
Q ss_pred EcCCCC
Q psy2380 319 FDLGIS 324 (733)
Q Consensus 319 ~DLGvs 324 (733)
.|.-+.
T Consensus 160 ~npPy~ 165 (251)
T TIGR03534 160 SNPPYI 165 (251)
T ss_pred ECCCCC
Confidence 875543
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.85 E-value=0.013 Score=58.46 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++..++|.-.|.|--|..++.. .++++|+|+|.++++++.++ +.+ -+++++++++..++. . .+++|.|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----~--~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----H--EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----c--cCCccEEE
Confidence 4679999999999999988765 47799999999999998873 222 246999999877641 1 24789988
Q ss_pred Ec
Q psy2380 319 FD 320 (733)
Q Consensus 319 ~D 320 (733)
.+
T Consensus 115 s~ 116 (181)
T TIGR00138 115 SR 116 (181)
T ss_pred eh
Confidence 76
No 60
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.76 E-value=0.008 Score=59.60 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=65.2
Q ss_pred HHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc----ccCCCcEEEEccCccchHHHHH
Q psy2380 232 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN----KITDSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 232 vl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~----~l~~~r~~~~~~~f~~~~~~l~ 307 (733)
++..|++ +|+++++|.=.|.|.=|.+.. ...|++|+||+|+|+++++..+ ++.-++++++.+.= .++|+
T Consensus 26 ~ls~L~~---~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A---p~~L~ 98 (187)
T COG2242 26 TLSKLRP---RPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA---PEALP 98 (187)
T ss_pred HHHhhCC---CCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc---hHhhc
Confidence 4567777 899999999999999999999 6679999999999999999973 33357889988854 33455
Q ss_pred hCCCCcccEEEEcCC
Q psy2380 308 KYNIKKIDGILFDLG 322 (733)
Q Consensus 308 ~~~~~~~dgil~DLG 322 (733)
. ++++|.|+.-=|
T Consensus 99 ~--~~~~daiFIGGg 111 (187)
T COG2242 99 D--LPSPDAIFIGGG 111 (187)
T ss_pred C--CCCCCEEEECCC
Confidence 3 346888887554
No 61
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.73 E-value=0.014 Score=50.20 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=58.0
Q ss_pred EEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-cc---CCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 247 YIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KI---TDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 247 ~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l---~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
++|...|.|+.+..+++ .+..+++++|.++++++.++ .. ...+.++++.++.+... ....++|.|+.+..
T Consensus 2 ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~~ 75 (107)
T cd02440 2 VLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDPP 75 (107)
T ss_pred eEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEccc
Confidence 68999999999999998 35789999999999999885 22 14678899988877543 12357999999887
Q ss_pred CCcc
Q psy2380 323 ISSN 326 (733)
Q Consensus 323 vss~ 326 (733)
.+.+
T Consensus 76 ~~~~ 79 (107)
T cd02440 76 LHHL 79 (107)
T ss_pred eeeh
Confidence 6654
No 62
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.71 E-value=0.0043 Score=64.40 Aligned_cols=88 Identities=15% Similarity=0.342 Sum_probs=72.6
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccCC---CcEEEEccCccchHH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKITD---SRFSIIHNCFTELDI 304 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~~---~r~~~~~~~f~~~~~ 304 (733)
.++.++.+.. .||..++|+..|.|-=+..+.+..+ .++|+|+|..+..++.| +|+.+ ..+++++++..+|+
T Consensus 40 r~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP- 114 (238)
T COG2226 40 RRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP- 114 (238)
T ss_pred HHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-
Confidence 4667777776 6789999999999999999999986 89999999999999999 56641 23999999998886
Q ss_pred HHHhCCCCcccEEEEcCCCCc
Q psy2380 305 ILKKYNIKKIDGILFDLGISS 325 (733)
Q Consensus 305 ~l~~~~~~~~dgil~DLGvss 325 (733)
++. +++|.+...+|.=.
T Consensus 115 -f~D---~sFD~vt~~fglrn 131 (238)
T COG2226 115 -FPD---NSFDAVTISFGLRN 131 (238)
T ss_pred -CCC---CccCEEEeeehhhc
Confidence 433 57899988887643
No 63
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.67 E-value=0.0093 Score=63.02 Aligned_cols=85 Identities=18% Similarity=0.381 Sum_probs=66.7
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC------CCcEEEEccCccchHHHHHhCCCCcc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT------DSRFSIIHNCFTELDIILKKYNIKKI 314 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~------~~r~~~~~~~f~~~~~~l~~~~~~~~ 314 (733)
+++..++|...|.|..+..+.++.+++++|+|+|.++++++.|+ +.. .+++++++++..+++ ..-+++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-----~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-----FDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-----CCCCCE
Confidence 56789999999999999999998878899999999999999984 432 247899998877653 122479
Q ss_pred cEEEEcCCCCccccCCCCC
Q psy2380 315 DGILFDLGISSNQINNELR 333 (733)
Q Consensus 315 dgil~DLGvss~q~~~~~r 333 (733)
|.|+..++.. .++|+++
T Consensus 147 D~V~~~~~l~--~~~d~~~ 163 (261)
T PLN02233 147 DAITMGYGLR--NVVDRLK 163 (261)
T ss_pred eEEEEecccc--cCCCHHH
Confidence 9999887765 3445544
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.56 E-value=0.0067 Score=61.54 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=65.3
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCc-cch
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCF-TEL 302 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f-~~~ 302 (733)
+..+..+.+.. +++.++|.-.|.|.++..+++.. |+++++|+|.++++++.++ ++. -+++.+++++. .++
T Consensus 29 ~~~~~~~~~~~----~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l 103 (202)
T PRK00121 29 APLDWAELFGN----DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL 103 (202)
T ss_pred CCCCHHHHcCC----CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH
Confidence 34444555543 56899999999999999999886 6789999999999999984 442 25799999987 665
Q ss_pred HHHHHhCCCCcccEEEEcC
Q psy2380 303 DIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 303 ~~~l~~~~~~~~dgil~DL 321 (733)
...+.. ..+|.|++++
T Consensus 104 ~~~~~~---~~~D~V~~~~ 119 (202)
T PRK00121 104 LDMFPD---GSLDRIYLNF 119 (202)
T ss_pred HHHcCc---cccceEEEEC
Confidence 544332 4689998765
No 65
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.52 E-value=0.0049 Score=64.04 Aligned_cols=132 Identities=17% Similarity=0.380 Sum_probs=90.2
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDII 305 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~ 305 (733)
+.+++.+.. +++..++|...|.|-=|..++++.+++++|+|+|..++.++.|+ |+. ..++++++++..+++
T Consensus 37 ~~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-- 111 (233)
T PF01209_consen 37 RKLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-- 111 (233)
T ss_dssp SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----
T ss_pred HHHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--
Confidence 456666666 77899999999999989999999888999999999999999994 553 358999999999875
Q ss_pred HHhCCCCcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHHHHH
Q psy2380 306 LKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAK 385 (733)
Q Consensus 306 l~~~~~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~ 385 (733)
++. +++|.|..=+|+-.+
T Consensus 112 ~~d---~sfD~v~~~fglrn~----------------------------------------------------------- 129 (233)
T PF01209_consen 112 FPD---NSFDAVTCSFGLRNF----------------------------------------------------------- 129 (233)
T ss_dssp S-T---T-EEEEEEES-GGG------------------------------------------------------------
T ss_pred CCC---CceeEEEHHhhHHhh-----------------------------------------------------------
Confidence 222 579999987765432
Q ss_pred HHHHHhccCCCCCHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEEeccchhh
Q psy2380 386 EIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465 (733)
Q Consensus 386 ~i~~~r~~~~~~tt~~l~~~i~~~~~~~~~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~visfhSlEd 465 (733)
| +.+++|+....+|||||+++|+.|+.-+-
T Consensus 130 -------------------------~-------------------------d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 130 -------------------------P-------------------------DRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp -------------------------S-------------------------SHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred -------------------------C-------------------------CHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 1 13345666778999999999999999999
Q ss_pred hHHHHHHHhcCCC
Q psy2380 466 RIVKNFINFNTKI 478 (733)
Q Consensus 466 r~vk~~~~~~~~~ 478 (733)
++.+.+++-+.+.
T Consensus 160 ~~~~~~~~~y~~~ 172 (233)
T PF01209_consen 160 PLLRALYKFYFKY 172 (233)
T ss_dssp HHHHHHHHH----
T ss_pred chhhceeeeeecc
Confidence 9999988877553
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=96.43 E-value=0.0086 Score=53.32 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=51.8
Q ss_pred EEEEccCCChhHHHHHHHc--CCCcEEEEEeCCHHHHHHhcc-cC--CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 247 YIDATFGQGGHSCKILERL--GKKGRLIAIDKDTESVSLGNK-IT--DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 247 ~vD~T~G~Gghs~~il~~~--~~~~~l~~~D~D~~a~~~a~~-l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
++|...|.|-++.++++.+ ++..+++|+|+++++++.+++ .. .-+++++++.+.++.. .. +++|.|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~---~~--~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF---SD--GKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH---HS--SSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc---cC--CCeeEEEE
Confidence 5899999999999999997 344799999999999999954 32 3488999999988753 11 37998888
No 67
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.41 E-value=0.0088 Score=67.94 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=66.4
Q ss_pred hhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHHHhC
Q psy2380 234 NWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIILKKY 309 (733)
Q Consensus 234 ~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l~~~ 309 (733)
..+.+ +++..++|++.|.||-|..+++..+++++|+|+|++++.++.+ ++++ -+++++++.+..++.......
T Consensus 246 ~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 246 PLLDP---QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHhCC---CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 34555 6789999999999999999999987789999999999999987 3443 246888888876654321100
Q ss_pred CCCcccEEEEcCCCCc
Q psy2380 310 NIKKIDGILFDLGISS 325 (733)
Q Consensus 310 ~~~~~dgil~DLGvss 325 (733)
-+++|.|++|==+|.
T Consensus 323 -~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 323 -RGYFDRILLDAPCSG 337 (434)
T ss_pred -cccCCEEEEeCCCCc
Confidence 136899999865543
No 68
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=96.37 E-value=0.66 Score=53.14 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhC
Q psy2380 45 ILKKMGPSVFSVFAAQISLMLNTNIASQ-MREGSL-SCLSYADRLMEFPTTLLG-VTFNTILLPNLSKARIEN 114 (733)
Q Consensus 45 ll~l~iPiil~~~v~qi~~~iD~~ias~-l~~g~v-~~l~~A~~L~~lP~~i~~-~ai~tvllP~lS~~~a~~ 114 (733)
++|-+.-.++++.+.+++.++|+.+.+. +++++. ++++.+..+.++-.++++ ..+++++.|..++...++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~ 74 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE 74 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 4556667778888999999999999887 688888 899999999887777655 468899999998766544
No 69
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.36 E-value=0.01 Score=63.77 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=70.3
Q ss_pred HhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEcc
Q psy2380 223 IMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHN 297 (733)
Q Consensus 223 ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~ 297 (733)
+..+.+++.+++.... .+++.++|.-.|.|..|..+++.. .+|+|+|+|+++++.++ ++. .++++++++
T Consensus 19 L~d~~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~ 92 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG 92 (294)
T ss_pred cCCHHHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 3456677788887776 778999999999999999999873 57999999999999984 553 368999999
Q ss_pred CccchHHHHHhCCCCcccEEEEcCCCC
Q psy2380 298 CFTELDIILKKYNIKKIDGILFDLGIS 324 (733)
Q Consensus 298 ~f~~~~~~l~~~~~~~~dgil~DLGvs 324 (733)
++.+.+ .+.+|.++.|+-|.
T Consensus 93 Dal~~~-------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 93 DALKTE-------FPYFDVCVANVPYQ 112 (294)
T ss_pred CHhhhc-------ccccCEEEecCCcc
Confidence 886542 13467888777664
No 70
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.32 E-value=0.011 Score=64.28 Aligned_cols=94 Identities=10% Similarity=0.190 Sum_probs=71.8
Q ss_pred hhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCc
Q psy2380 224 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCF 299 (733)
Q Consensus 224 l~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f 299 (733)
..|.+...+++.+.. ++++.++|...|.|.-+..+++..++.++|+++|+++++++.|+ ++. -+++++++++.
T Consensus 64 ~~p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 64 SQPSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred CcHHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 356677777777766 77889999999999999999988766689999999999999884 442 35788888765
Q ss_pred cchHHHHHhCCCCcccEEEEcCCCCc
Q psy2380 300 TELDIILKKYNIKKIDGILFDLGISS 325 (733)
Q Consensus 300 ~~~~~~l~~~~~~~~dgil~DLGvss 325 (733)
.+. +.+. .++|.|+.+.|+..
T Consensus 141 ~~~---~~~~--~~fD~Ii~~~g~~~ 161 (322)
T PRK13943 141 YYG---VPEF--APYDVIFVTVGVDE 161 (322)
T ss_pred hhc---cccc--CCccEEEECCchHH
Confidence 432 2222 46999999987654
No 71
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.30 E-value=0.062 Score=53.14 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+++.++|.-.|.|..+..+.+.. + +++++|.++++++.++ ++. +.++++++++..+. .. +++|.|+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~----~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VR----GKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cC----CcccEEEE
Confidence 45789999999999999999864 3 8999999999999984 443 33577777765442 11 36888887
Q ss_pred cCCC
Q psy2380 320 DLGI 323 (733)
Q Consensus 320 DLGv 323 (733)
|.-+
T Consensus 89 n~p~ 92 (179)
T TIGR00537 89 NPPY 92 (179)
T ss_pred CCCC
Confidence 7654
No 72
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.29 E-value=0.016 Score=58.29 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=48.1
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCcc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFT 300 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~ 300 (733)
++++.++|.-.|.|.++..+++.. ++++|+|+|.|+++++.++ +++ -+++++++++..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~ 100 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP 100 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH
Confidence 678899999999999999998764 6789999999999999984 442 246888887653
No 73
>PRK03612 spermidine synthase; Provisional
Probab=96.27 E-value=3.4 Score=48.23 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc---c--------CCCcEEEEccCccchHHHHHhCCC
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK---I--------TDSRFSIIHNCFTELDIILKKYNI 311 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~---l--------~~~r~~~~~~~f~~~~~~l~~~~~ 311 (733)
+.+.++|.=.|.|+-+++++++ ++..++.++|+|+++++.+++ + .++|+++++++.. +++++..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~---~~l~~~~- 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF---NWLRKLA- 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH---HHHHhCC-
Confidence 3568999999999999999975 344799999999999999954 2 1368999887654 3454432
Q ss_pred CcccEEEEcC
Q psy2380 312 KKIDGILFDL 321 (733)
Q Consensus 312 ~~~dgil~DL 321 (733)
+++|.|+.|+
T Consensus 372 ~~fDvIi~D~ 381 (521)
T PRK03612 372 EKFDVIIVDL 381 (521)
T ss_pred CCCCEEEEeC
Confidence 4799999994
No 74
>PRK06202 hypothetical protein; Provisional
Probab=96.27 E-value=0.026 Score=58.38 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCCEEEEEccCCChhHHHHHHHc---CCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERL---GKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~---~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++..++|.-.|.|+.+..+++.. +++.+++|+|.++++++.|+ +....++.+.......+.. .-+++|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~-----~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA-----EGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc-----cCCCccEEE
Confidence 46789999999999999998753 45579999999999999984 4433445554443333321 124799999
Q ss_pred EcCCCCccccCCC
Q psy2380 319 FDLGISSNQINNE 331 (733)
Q Consensus 319 ~DLGvss~q~~~~ 331 (733)
..++. ++++++
T Consensus 135 ~~~~l--hh~~d~ 145 (232)
T PRK06202 135 SNHFL--HHLDDA 145 (232)
T ss_pred ECCee--ecCChH
Confidence 98754 566654
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.23 E-value=0.047 Score=57.26 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=34.8
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
.+++.++|.-.|.|..+.++.+ .+. .+++|+|+|+.+++.|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g~-~~v~giDis~~~l~~A~ 159 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LGA-KKVLAVDIDPQAVEAAR 159 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cCC-CeEEEEECCHHHHHHHH
Confidence 3578999999999988887654 444 47999999999999984
No 76
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.20 E-value=0.025 Score=59.15 Aligned_cols=97 Identities=15% Similarity=0.276 Sum_probs=68.2
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELD 303 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~ 303 (733)
..-++..+.. +||..++++=-|.|.=|.+++..++|.|+|+.+|..++-.+.| ++++ .+++++.|.+-.+-.
T Consensus 29 ~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 3334445554 8999999999999999999999999999999999999999999 4553 568999988764311
Q ss_pred HHHHhCCC-CcccEEEEcCCCCccccCCC
Q psy2380 304 IILKKYNI-KKIDGILFDLGISSNQINNE 331 (733)
Q Consensus 304 ~~l~~~~~-~~~dgil~DLGvss~q~~~~ 331 (733)
+. .++ ..+|+|++||.=.-.-++..
T Consensus 106 --~~-~~~~~~~DavfLDlp~Pw~~i~~~ 131 (247)
T PF08704_consen 106 --FD-EELESDFDAVFLDLPDPWEAIPHA 131 (247)
T ss_dssp ---S-TT-TTSEEEEEEESSSGGGGHHHH
T ss_pred --cc-ccccCcccEEEEeCCCHHHHHHHH
Confidence 11 111 47999999998665555443
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.19 E-value=0.069 Score=57.29 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=49.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.++..++|.-.|.|..+.++++. + ..+++|+|.|+.+++.|+ +.. .+++.....+... .. -.++|.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~----~~~fDl 228 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PI----EGKADV 228 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---cc----CCCceE
Confidence 35789999999999999887753 3 469999999999999984 432 3455555443111 11 136888
Q ss_pred EEEcC
Q psy2380 317 ILFDL 321 (733)
Q Consensus 317 il~DL 321 (733)
|+.|+
T Consensus 229 Vvan~ 233 (288)
T TIGR00406 229 IVANI 233 (288)
T ss_pred EEEec
Confidence 88764
No 78
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.17 E-value=0.022 Score=56.75 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=57.1
Q ss_pred HhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHh
Q psy2380 233 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKK 308 (733)
Q Consensus 233 l~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~ 308 (733)
++.+.. .+++.++|.-.|.|.++..++++. ++++++++|+++++++.++ +.. -+++++++++.. ..++
T Consensus 24 ~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~---~~~~- 95 (187)
T PRK08287 24 LSKLEL---HRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP---IELP- 95 (187)
T ss_pred HHhcCC---CCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch---hhcC-
Confidence 344444 567899999999999999999885 7799999999999999984 332 246888887642 1121
Q ss_pred CCCCcccEEEE
Q psy2380 309 YNIKKIDGILF 319 (733)
Q Consensus 309 ~~~~~~dgil~ 319 (733)
+++|.|+.
T Consensus 96 ---~~~D~v~~ 103 (187)
T PRK08287 96 ---GKADAIFI 103 (187)
T ss_pred ---cCCCEEEE
Confidence 36888875
No 79
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.17 E-value=0.017 Score=65.42 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=65.2
Q ss_pred HhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhC
Q psy2380 233 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKY 309 (733)
Q Consensus 233 l~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~ 309 (733)
...+.+ ++++.++|+..|.|+.|..+++.. ++++|+|+|.++++++.++ +++ +-++++++++..++.....
T Consensus 237 ~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~-- 310 (427)
T PRK10901 237 ATLLAP---QNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD-- 310 (427)
T ss_pred HHHcCC---CCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc--
Confidence 344555 678999999999999999999987 4489999999999999984 443 2346777777666543322
Q ss_pred CCCcccEEEEcCCCCc
Q psy2380 310 NIKKIDGILFDLGISS 325 (733)
Q Consensus 310 ~~~~~dgil~DLGvss 325 (733)
-.++|.|++|-=+|.
T Consensus 311 -~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 311 -GQPFDRILLDAPCSA 325 (427)
T ss_pred -cCCCCEEEECCCCCc
Confidence 146999999977663
No 80
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.11 E-value=0.024 Score=55.66 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=64.2
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCccchHHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~~~~~~l~ 307 (733)
+.+++.+.. .++..++|.=.|.|..|..++++ .++++|+|.|+.+++.++ ++. .++++++++++.++. ++
T Consensus 3 ~~i~~~~~~---~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~--~~ 74 (169)
T smart00650 3 DKIVRAANL---RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD--LP 74 (169)
T ss_pred HHHHHhcCC---CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC--cc
Confidence 455666665 67789999999999999999987 468999999999999984 554 368999999987763 11
Q ss_pred hCCCCcccEEEEcCCC
Q psy2380 308 KYNIKKIDGILFDLGI 323 (733)
Q Consensus 308 ~~~~~~~dgil~DLGv 323 (733)
. ..+|.|+.|+=|
T Consensus 75 ~---~~~d~vi~n~Py 87 (169)
T smart00650 75 K---LQPYKVVGNLPY 87 (169)
T ss_pred c---cCCCEEEECCCc
Confidence 1 247888777544
No 81
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.07 E-value=0.023 Score=60.37 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=66.8
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchH
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELD 303 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~ 303 (733)
.+.+.+.+++.+.. .++..++|.-.|.|..|..++++. + +|+|+|.|+++++.++ ++.+++++++++++.+++
T Consensus 27 ~~~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~ 100 (272)
T PRK00274 27 DENILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERA-A--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVD 100 (272)
T ss_pred CHHHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhC-C--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCC
Confidence 34455667777765 678899999999999999999984 3 8999999999999984 554578999999988763
Q ss_pred HHHHhCCCCcccEEEEcCCC
Q psy2380 304 IILKKYNIKKIDGILFDLGI 323 (733)
Q Consensus 304 ~~l~~~~~~~~dgil~DLGv 323 (733)
+++. ..|.|+.|+-|
T Consensus 101 --~~~~---~~~~vv~NlPY 115 (272)
T PRK00274 101 --LSEL---QPLKVVANLPY 115 (272)
T ss_pred --HHHc---CcceEEEeCCc
Confidence 2221 13666666654
No 82
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.02 E-value=0.038 Score=56.69 Aligned_cols=86 Identities=19% Similarity=0.437 Sum_probs=65.6
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELD 303 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~ 303 (733)
..+++..+.. .++..++|...|.|..+..+++..+++.+++++|.++++++.++ ++. .+++.+++.++.++.
T Consensus 40 ~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 40 RRKTIKWLGV---RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHhCC---CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 3455566655 56789999999999999999999855799999999999999984 442 357888888887753
Q ss_pred HHHHhCCCCcccEEEEcCC
Q psy2380 304 IILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 304 ~~l~~~~~~~~dgil~DLG 322 (733)
...+++|.|+...+
T Consensus 117 -----~~~~~~D~I~~~~~ 130 (239)
T PRK00216 117 -----FPDNSFDAVTIAFG 130 (239)
T ss_pred -----CCCCCccEEEEecc
Confidence 12246898876443
No 83
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.99 E-value=0.025 Score=64.53 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=63.2
Q ss_pred hhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhC
Q psy2380 234 NWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKY 309 (733)
Q Consensus 234 ~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~ 309 (733)
..+.+ .++..++|+..|.||-|..+++.+++.++|+|+|.+++.++.++ +++ -+++++++++..++. +.
T Consensus 244 ~~l~~---~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---~~- 316 (445)
T PRK14904 244 LLLNP---QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---PE- 316 (445)
T ss_pred HhcCC---CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---cC-
Confidence 34455 67889999999999999999998877789999999999999883 443 246788887665532 11
Q ss_pred CCCcccEEEEcCCCC
Q psy2380 310 NIKKIDGILFDLGIS 324 (733)
Q Consensus 310 ~~~~~dgil~DLGvs 324 (733)
.++|.|++|=-+|
T Consensus 317 --~~fD~Vl~D~Pcs 329 (445)
T PRK14904 317 --EQPDAILLDAPCT 329 (445)
T ss_pred --CCCCEEEEcCCCC
Confidence 3699999885544
No 84
>PRK08317 hypothetical protein; Provisional
Probab=95.96 E-value=0.037 Score=56.58 Aligned_cols=86 Identities=16% Similarity=0.326 Sum_probs=65.3
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIIL 306 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l 306 (733)
+++++.+.. +++..++|...|.|..+..+++.++++++++|+|.+++.++.++ +.. ..++.++..++.++. +
T Consensus 9 ~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~ 83 (241)
T PRK08317 9 ARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--F 83 (241)
T ss_pred HHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--C
Confidence 345555555 67889999999999999999998877899999999999999984 322 457888887776543 1
Q ss_pred HhCCCCcccEEEEcCCC
Q psy2380 307 KKYNIKKIDGILFDLGI 323 (733)
Q Consensus 307 ~~~~~~~~dgil~DLGv 323 (733)
. -..+|.|+.+..+
T Consensus 84 ~---~~~~D~v~~~~~~ 97 (241)
T PRK08317 84 P---DGSFDAVRSDRVL 97 (241)
T ss_pred C---CCCceEEEEechh
Confidence 1 1468888877544
No 85
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.90 E-value=0.022 Score=64.59 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=61.0
Q ss_pred HhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC--C--CcEEEEccCccchHHHHH
Q psy2380 233 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT--D--SRFSIIHNCFTELDIILK 307 (733)
Q Consensus 233 l~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~--~--~r~~~~~~~f~~~~~~l~ 307 (733)
...+.+ +++..++|++.|.||-|..+++.++ +++|+|+|++++.++.+ ++++ + .++++..+.-.+.....+
T Consensus 231 ~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 231 ATWLAP---QNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHhCC---CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 344556 7789999999999999999999885 79999999999999988 3443 1 233334443322221111
Q ss_pred hCCCCcccEEEEcCCCCcc
Q psy2380 308 KYNIKKIDGILFDLGISSN 326 (733)
Q Consensus 308 ~~~~~~~dgil~DLGvss~ 326 (733)
..++|.|+.|==+|+.
T Consensus 307 ---~~~fD~VllDaPcSg~ 322 (426)
T TIGR00563 307 ---NEQFDRILLDAPCSAT 322 (426)
T ss_pred ---ccccCEEEEcCCCCCC
Confidence 1469999998666554
No 86
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.86 E-value=0.039 Score=57.36 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=61.8
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccch-HHHHHhCCCCccc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTEL-DIILKKYNIKKID 315 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~-~~~l~~~~~~~~d 315 (733)
.+.+.++|.-.|.|.=+..|++.++++++|+++|+|+++++.|+ +++ ++++++++++..+. +++.+...-+++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 34678999999999999999998888999999999999999984 443 47899999987653 2222221124799
Q ss_pred EEEEcC
Q psy2380 316 GILFDL 321 (733)
Q Consensus 316 gil~DL 321 (733)
.|++|-
T Consensus 147 ~VfiDa 152 (234)
T PLN02781 147 FAFVDA 152 (234)
T ss_pred EEEECC
Confidence 999974
No 87
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.83 E-value=0.041 Score=54.94 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=54.7
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchH---HHHHhCCCCcccEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELD---IILKKYNIKKIDGIL 318 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~---~~l~~~~~~~~dgil 318 (733)
++++.++|...|.|+-|..++++..+.++++|+|.+++. +. +++++++.++.+.. ...+..+.+++|.|+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~--~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PI--ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cC--CCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 568899999999999999999998778899999999864 11 35778877776532 222223335688888
Q ss_pred EcC
Q psy2380 319 FDL 321 (733)
Q Consensus 319 ~DL 321 (733)
.|-
T Consensus 104 ~~~ 106 (188)
T TIGR00438 104 SDA 106 (188)
T ss_pred cCC
Confidence 765
No 88
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.75 E-value=0.034 Score=63.38 Aligned_cols=87 Identities=14% Similarity=0.256 Sum_probs=64.2
Q ss_pred hhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccch
Q psy2380 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTEL 302 (733)
Q Consensus 227 vll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~ 302 (733)
.+.+++++.+.. .++..++|+-.|.|..|..+++.. .+|+|+|.+++|++.|+ ++. -+++++++++..+.
T Consensus 284 ~l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 284 KMVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 355667777765 677899999999999999998874 58999999999999984 442 24688998887543
Q ss_pred HHHHHhC--CCCcccEEEEcCC
Q psy2380 303 DIILKKY--NIKKIDGILFDLG 322 (733)
Q Consensus 303 ~~~l~~~--~~~~~dgil~DLG 322 (733)
+... .-.++|.|++|-=
T Consensus 358 ---l~~~~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 358 ---FTDQPWALGGFDKVLLDPP 376 (443)
T ss_pred ---hhhhhhhcCCCCEEEECcC
Confidence 2211 1135888887643
No 89
>PTZ00146 fibrillarin; Provisional
Probab=95.67 E-value=0.037 Score=59.07 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=57.8
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHH----HHhcccCCCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESV----SLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~----~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+|+..++|+-.|.|.=|..+++.+++.++|||+|.++++. +.+++ ..++.++..+..+-.++-.. .+++|.|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~p~~y~~~--~~~vDvV 206 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARYPQKYRML--VPMVDVI 206 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccChhhhhcc--cCCCCEE
Confidence 6788999999999999999999998899999999998754 43422 25688888776542222211 2469999
Q ss_pred EEcC
Q psy2380 318 LFDL 321 (733)
Q Consensus 318 l~DL 321 (733)
+.|.
T Consensus 207 ~~Dv 210 (293)
T PTZ00146 207 FADV 210 (293)
T ss_pred EEeC
Confidence 9998
No 90
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.65 E-value=0.048 Score=57.48 Aligned_cols=88 Identities=11% Similarity=0.188 Sum_probs=69.1
Q ss_pred HhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCcc
Q psy2380 223 IMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFT 300 (733)
Q Consensus 223 ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~ 300 (733)
+..+-..+.+++.+.. .++..++|.-.|.|..|..++++ ..+++|+|+|+++++.++ ++. .++++++++++.
T Consensus 12 l~d~~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~ 85 (258)
T PRK14896 12 LIDDRVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDAL 85 (258)
T ss_pred cCCHHHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccc
Confidence 3456667777777765 67889999999999999999987 358999999999999984 554 468999999887
Q ss_pred chHHHHHhCCCCcccEEEEcCCC
Q psy2380 301 ELDIILKKYNIKKIDGILFDLGI 323 (733)
Q Consensus 301 ~~~~~l~~~~~~~~dgil~DLGv 323 (733)
+++ .+.+|.|+.++=|
T Consensus 86 ~~~-------~~~~d~Vv~NlPy 101 (258)
T PRK14896 86 KVD-------LPEFNKVVSNLPY 101 (258)
T ss_pred cCC-------chhceEEEEcCCc
Confidence 653 1245778777765
No 91
>KOG2730|consensus
Probab=95.61 E-value=0.017 Score=58.28 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=51.0
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHh
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKK 308 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~ 308 (733)
.++||+-+|.||-+-....+. ..||++|+||.=++.|+ +++ ++|++|+++.|-++.+-++-
T Consensus 96 ~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~ 161 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA 161 (263)
T ss_pred chhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh
Confidence 478899999999888887664 57999999999999994 675 67999999999887776654
No 92
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.58 E-value=0.046 Score=58.54 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=62.3
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh----cccCCCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG----NKITDSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a----~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|++.|-||-|..+++.++..++++|.|++++-++.- +|+.-.++..++....+....... ..+|.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~---~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE---SKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT---TTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc---cccchh
Confidence 7889999999999999999999998899999999999988875 233345677776444444332222 259999
Q ss_pred EEcCCCCcc
Q psy2380 318 LFDLGISSN 326 (733)
Q Consensus 318 l~DLGvss~ 326 (733)
|.|==.|..
T Consensus 161 lvDaPCSg~ 169 (283)
T PF01189_consen 161 LVDAPCSGL 169 (283)
T ss_dssp EEECSCCCG
T ss_pred hcCCCccch
Confidence 999776653
No 93
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.57 E-value=0.032 Score=58.55 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDI 304 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~ 304 (733)
+++++.+.. ++..++|.-.|.|..|..++++ +.+|+|+|.++++++.|+ +.. .+++++++++..++..
T Consensus 35 ~~~l~~l~~----~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~ 107 (255)
T PRK11036 35 DRLLAELPP----RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ 107 (255)
T ss_pred HHHHHhcCC----CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh
Confidence 455665543 4579999999999999999875 468999999999999985 442 3578999988877643
Q ss_pred HHHhCCCCcccEEEE
Q psy2380 305 ILKKYNIKKIDGILF 319 (733)
Q Consensus 305 ~l~~~~~~~~dgil~ 319 (733)
... +++|.|++
T Consensus 108 ~~~----~~fD~V~~ 118 (255)
T PRK11036 108 HLE----TPVDLILF 118 (255)
T ss_pred hcC----CCCCEEEe
Confidence 322 46898885
No 94
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.57 E-value=0.022 Score=59.26 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=61.0
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-cc--C--CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KI--T--DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l--~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
..+.++|...|+|.=+.++.++. ++.++.|+|+|+++.+.|+ .+ . ++|++++++++.++.+.... .++|.|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~---~~fD~I 119 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF---ASFDLI 119 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc---cccCEE
Confidence 37899999999999999999997 4499999999999999994 33 2 68999999999887665443 357777
Q ss_pred EEc
Q psy2380 318 LFD 320 (733)
Q Consensus 318 l~D 320 (733)
+.|
T Consensus 120 i~N 122 (248)
T COG4123 120 ICN 122 (248)
T ss_pred EeC
Confidence 754
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.54 E-value=0.034 Score=61.76 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=64.9
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDII 305 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~ 305 (733)
+++++.+.+ ..+.+++|.-+|.|.++..++++. |+..++|+|+++.+++.+ ++.. -+++.+++++-.++...
T Consensus 112 ~~~~~~~~~---~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~ 187 (390)
T PRK14121 112 DNFLDFISK---NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL 187 (390)
T ss_pred HHHHHHhcC---CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh
Confidence 356666666 556799999999999999999996 889999999999999998 3432 24799998876554433
Q ss_pred HHhCCCCcccEEEEc
Q psy2380 306 LKKYNIKKIDGILFD 320 (733)
Q Consensus 306 l~~~~~~~~dgil~D 320 (733)
++ -+++|.|.+.
T Consensus 188 ~~---~~s~D~I~ln 199 (390)
T PRK14121 188 LP---SNSVEKIFVH 199 (390)
T ss_pred CC---CCceeEEEEe
Confidence 33 2579999864
No 96
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.51 E-value=0.057 Score=56.07 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCCEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
++..++|.-.|.|..+..+++++. |+++++|+|.++++++.|+ ++. ..+++++++++.++. .+..|.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-------IKNASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------CCCCCE
Confidence 567899999999999999999863 6899999999999999994 543 357899998887653 235776
Q ss_pred EEEc
Q psy2380 317 ILFD 320 (733)
Q Consensus 317 il~D 320 (733)
|+..
T Consensus 126 v~~~ 129 (239)
T TIGR00740 126 VILN 129 (239)
T ss_pred Eeee
Confidence 6643
No 97
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.51 E-value=0.046 Score=62.45 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=63.2
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+|+..++|++.|-||=|..|++.++..|.|+|.|+++.=++.. ++++ -.++.+.+..-.++.+.+. ..+|.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~----~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP----ETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch----hhcCeE
Confidence 6889999999999999999999998889999999999988775 3443 2457777665555444333 358999
Q ss_pred EEcCCCCc
Q psy2380 318 LFDLGISS 325 (733)
Q Consensus 318 l~DLGvss 325 (733)
|+|-=+|.
T Consensus 188 LvDaPCSG 195 (470)
T PRK11933 188 LLDAPCSG 195 (470)
T ss_pred EEcCCCCC
Confidence 99988874
No 98
>PRK10742 putative methyltransferase; Provisional
Probab=95.47 E-value=0.039 Score=57.38 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=56.3
Q ss_pred cCCC--EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh----ccc------CC---CcEEEEccCccchHHHH
Q psy2380 242 RING--IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG----NKI------TD---SRFSIIHNCFTELDIIL 306 (733)
Q Consensus 242 ~~~~--~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a----~~l------~~---~r~~~~~~~f~~~~~~l 306 (733)
+++. .++|||.|.|.++..++.. +++|+++|++|.+.... +++ .. .|+++++++..+ +|
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~---~L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT---AL 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH---HH
Confidence 5555 8999999999999999866 67899999999988775 232 11 578888887644 55
Q ss_pred HhCCCCcccEEEEcCCC
Q psy2380 307 KKYNIKKIDGILFDLGI 323 (733)
Q Consensus 307 ~~~~~~~~dgil~DLGv 323 (733)
+... +.+|.|.+|==|
T Consensus 159 ~~~~-~~fDVVYlDPMf 174 (250)
T PRK10742 159 TDIT-PRPQVVYLDPMF 174 (250)
T ss_pred hhCC-CCCcEEEECCCC
Confidence 5433 369999998544
No 99
>KOG2915|consensus
Probab=95.42 E-value=0.032 Score=58.11 Aligned_cols=91 Identities=16% Similarity=0.276 Sum_probs=71.2
Q ss_pred hhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCcc
Q psy2380 226 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFT 300 (733)
Q Consensus 226 pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~ 300 (733)
+.-..-++..+.. +||.+++.+--|.|+=|-+|++..+|.|+|+.||.+.+--+.| +.++ ++++++.|.+-.
T Consensus 91 t~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc 167 (314)
T KOG2915|consen 91 TPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC 167 (314)
T ss_pred cccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc
Confidence 3344556777877 8999999999999999999999999999999999988777766 4443 678998887655
Q ss_pred chHHHHHhCCCCcccEEEEcCC
Q psy2380 301 ELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 301 ~~~~~l~~~~~~~~dgil~DLG 322 (733)
.--...++ .++|+|.+||=
T Consensus 168 ~~GF~~ks---~~aDaVFLDlP 186 (314)
T KOG2915|consen 168 GSGFLIKS---LKADAVFLDLP 186 (314)
T ss_pred cCCccccc---cccceEEEcCC
Confidence 44333333 36899999973
No 100
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.42 E-value=0.052 Score=55.48 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=70.1
Q ss_pred HHhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEcc
Q psy2380 222 RIMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHN 297 (733)
Q Consensus 222 ~ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~ 297 (733)
.+..|-+...+++.+.. +|+..++|.--|.|--|..+.+..++.++|+++|+|++..+.| ++|. -.+++++++
T Consensus 54 ~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 54 TISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp EE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred echHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 34557777888888887 8999999998888888777777778889999999999999999 4664 357899888
Q ss_pred CccchHHHHHhCCCCcccEEEEcCCCCc
Q psy2380 298 CFTELDIILKKYNIKKIDGILFDLGISS 325 (733)
Q Consensus 298 ~f~~~~~~l~~~~~~~~dgil~DLGvss 325 (733)
+-..- +++. .++|.|++.-++..
T Consensus 131 dg~~g---~~~~--apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 131 DGSEG---WPEE--APFDRIIVTAAVPE 153 (209)
T ss_dssp -GGGT---TGGG---SEEEEEESSBBSS
T ss_pred chhhc---cccC--CCcCEEEEeeccch
Confidence 64331 2222 36999999988864
No 101
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.04 Score=57.21 Aligned_cols=76 Identities=13% Similarity=0.278 Sum_probs=63.3
Q ss_pred ccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHHHHhCCCCccc
Q psy2380 241 ERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 241 ~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
+.|+..++|+=-|.|-=|..|+...+|.|+|+.+|++++-.+.| ++++ ++++++..+...+ ...+ +.+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~---~~~~---~~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE---GIDE---EDVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc---cccc---cccC
Confidence 47899999999999999999999999999999999999999999 5664 5778877754443 3333 2799
Q ss_pred EEEEcCC
Q psy2380 316 GILFDLG 322 (733)
Q Consensus 316 gil~DLG 322 (733)
+|++|+.
T Consensus 166 av~LDmp 172 (256)
T COG2519 166 AVFLDLP 172 (256)
T ss_pred EEEEcCC
Confidence 9999985
No 102
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.36 E-value=0.05 Score=57.17 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=54.8
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
...++|.-.|.|.=+..+++.. +..+++|+|+|++|++.|+ ++..++.+++++++.+. +....-+++|.|++|-=
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~---l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDA---LPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhh---cchhcCCCEeEEEECCC
Confidence 3589999999999999999886 5679999999999999984 55433356777765431 21110135888888854
Q ss_pred C
Q psy2380 323 I 323 (733)
Q Consensus 323 v 323 (733)
|
T Consensus 163 y 163 (251)
T TIGR03704 163 Y 163 (251)
T ss_pred C
Confidence 4
No 103
>PRK04266 fibrillarin; Provisional
Probab=95.34 E-value=0.088 Score=54.48 Aligned_cols=75 Identities=9% Similarity=0.044 Sum_probs=54.3
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC-CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT-DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~-~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+++..++|.-.|.|+-|..+.+..+ .++|+|+|+++++++.. ++.. .+++.+++++-.+...... . .+++|.|+-
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~-l-~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAH-V-VEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhh-c-cccCCEEEE
Confidence 7889999999999999999999885 78999999999888755 2222 2568888777554211111 0 135888874
No 104
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=95.30 E-value=0.043 Score=55.19 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=59.9
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++.+++|.-+|.|..+.+++++. |++.++|+|+++++++.|+ ++. -+++++++++..++...+. .-..+|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~--~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF--PDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC--CCCceeEEE
Confidence 45699999999999999999986 7899999999999999983 432 2489999998876543221 113689999
Q ss_pred EcCC
Q psy2380 319 FDLG 322 (733)
Q Consensus 319 ~DLG 322 (733)
+++.
T Consensus 93 ~~~p 96 (194)
T TIGR00091 93 LNFP 96 (194)
T ss_pred EECC
Confidence 8853
No 105
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.28 E-value=0.049 Score=59.22 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=55.0
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++..++|+-.|.|..|..+++. ..+|+|+|.+++|++.|+ +.+ -+++++++++..++. ... ..++|.|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~-~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQ-GEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---Hhc-CCCCeEEE
Confidence 4679999999999999999874 468999999999999984 332 247889988776543 221 13589999
Q ss_pred Ec
Q psy2380 319 FD 320 (733)
Q Consensus 319 ~D 320 (733)
+|
T Consensus 246 ~d 247 (315)
T PRK03522 246 VN 247 (315)
T ss_pred EC
Confidence 88
No 106
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.25 E-value=0.087 Score=55.22 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=62.7
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~ 307 (733)
..++++.+.. +++..++|.-.|.|.-+..+.++. ++++++|+|.++++++.|+ ++ +++.++.++..++. .
T Consensus 20 ~~~ll~~~~~---~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~---~ 90 (258)
T PRK01683 20 ARDLLARVPL---ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ---P 90 (258)
T ss_pred HHHHHhhCCC---cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC---C
Confidence 4566666665 678899999999999999999886 6789999999999999984 44 45777777765431 1
Q ss_pred hCCCCcccEEEEcC
Q psy2380 308 KYNIKKIDGILFDL 321 (733)
Q Consensus 308 ~~~~~~~dgil~DL 321 (733)
. +++|.|+.+.
T Consensus 91 ~---~~fD~v~~~~ 101 (258)
T PRK01683 91 P---QALDLIFANA 101 (258)
T ss_pred C---CCccEEEEcc
Confidence 1 3688888774
No 107
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.25 E-value=0.073 Score=54.42 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=53.3
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.++..++|.-.|.|..+..+++. ..+++|+|.++++++.| +++. .+++.+.++++.++. +++|.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~fD~ 122 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--------GEFDI 122 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--------CCcCE
Confidence 35789999999999999999875 45899999999999998 4553 247888888876643 35787
Q ss_pred EEE
Q psy2380 317 ILF 319 (733)
Q Consensus 317 il~ 319 (733)
|+.
T Consensus 123 ii~ 125 (219)
T TIGR02021 123 VVC 125 (219)
T ss_pred EEE
Confidence 766
No 108
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.18 E-value=0.071 Score=60.51 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=61.2
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDI 304 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~ 304 (733)
.+.+.+.+.. +++..++|+..|.|..|..+.+.. .+|+|+|.++++++.|+ ++. -+++++++++..+.
T Consensus 281 ~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-- 352 (431)
T TIGR00479 281 VDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-- 352 (431)
T ss_pred HHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH--
Confidence 3445555554 567899999999999999988763 48999999999999984 442 25799999987653
Q ss_pred HHHhC--CCCcccEEEEcC
Q psy2380 305 ILKKY--NIKKIDGILFDL 321 (733)
Q Consensus 305 ~l~~~--~~~~~dgil~DL 321 (733)
++.. .-.++|.|++|-
T Consensus 353 -l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 353 -LPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred -HHHHHhcCCCCCEEEECc
Confidence 2221 113589998654
No 109
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.18 E-value=0.08 Score=55.94 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=60.0
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
.++..++|...|.|.-+..+++.. ++.+++|+|.++++++.|+ ++. .+++.++++++.+- +. -.++|.|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~---~~---~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP---LP---GGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---CC---CCceeEE
Confidence 467789999999999999999987 6789999999999999984 432 46789988876321 11 1468999
Q ss_pred EEcCCCCc
Q psy2380 318 LFDLGISS 325 (733)
Q Consensus 318 l~DLGvss 325 (733)
+.|.-|.+
T Consensus 180 v~npPy~~ 187 (275)
T PRK09328 180 VSNPPYIP 187 (275)
T ss_pred EECCCcCC
Confidence 88866543
No 110
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.16 E-value=0.07 Score=55.82 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=58.4
Q ss_pred cCCCEEEEEccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCccc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
.+++.++|.-.|.|..+..+++.+ .|+++++|+|.++++++.|+ ++. .++++++++++.++. .+..|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-------IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-------CCCCC
Confidence 357899999999999999998864 47899999999999999994 543 358999998876542 23578
Q ss_pred EEEEcCC
Q psy2380 316 GILFDLG 322 (733)
Q Consensus 316 gil~DLG 322 (733)
.|+..+.
T Consensus 128 ~vv~~~~ 134 (247)
T PRK15451 128 MVVLNFT 134 (247)
T ss_pred EEehhhH
Confidence 8886654
No 111
>PRK05785 hypothetical protein; Provisional
Probab=95.05 E-value=0.2 Score=51.78 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=102.3
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
+++.++|.-.|.|-.+..+.+.. +++|+|+|.++++++.|++- ...+++++.+++ ..-+++|.|+.-++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~----~~~~~~d~~~lp-----~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA----DDKVVGSFEALP-----FRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc----cceEEechhhCC-----CCCCCEEEEEecCh
Confidence 46799999999999999998875 57999999999999998431 124566665542 12257999999887
Q ss_pred CCccccCCCCCCcccCC----C--CCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHH-HHHHHHHHHhccCC
Q psy2380 323 ISSNQINNELRGFSFLL----D--GPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAK-KIAKEIVHYRSITP 395 (733)
Q Consensus 323 vss~q~~~~~rGfs~~~----~--~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~-~ia~~i~~~r~~~~ 395 (733)
+ ++++|+++.++=.. . +-|++ .+..+.....+.+-|...-+-.+-+-++..+.+. .+.+.| + .
T Consensus 120 l--~~~~d~~~~l~e~~RvLkp~~~ile~--~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si-~-----~ 189 (226)
T PRK05785 120 L--HASDNIEKVIAEFTRVSRKQVGFIAM--GKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIY-E-----R 189 (226)
T ss_pred h--hccCCHHHHHHHHHHHhcCceEEEEe--CCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-H-----H
Confidence 6 57888887765321 1 12333 1112333566777888888777878888766666 444444 2 3
Q ss_pred CCCHHHHHHHHHhhc
Q psy2380 396 ITRTKQLVEIILKSI 410 (733)
Q Consensus 396 ~~tt~~l~~~i~~~~ 410 (733)
+.+..++.++.+++.
T Consensus 190 f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 190 LPTNSFHREIFEKYA 204 (226)
T ss_pred CCCHHHHHHHHHHHh
Confidence 788899999999863
No 112
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.95 E-value=0.12 Score=52.53 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=64.8
Q ss_pred HhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccC
Q psy2380 223 IMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNC 298 (733)
Q Consensus 223 ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~ 298 (733)
+..|.+...++..+.. +++..++|...|.|..|..+.+.. ++++++|.++++++.++ +++ -+++++++++
T Consensus 61 ~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 61 ISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred eCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3456666666777776 788999999999999998666553 48999999999999883 553 2358888887
Q ss_pred ccchHHHHHhCCCCcccEEEEcCC
Q psy2380 299 FTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 299 f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
..+. +.. .+++|.|++|-.
T Consensus 135 ~~~~---~~~--~~~fD~I~~~~~ 153 (212)
T PRK00312 135 GWKG---WPA--YAPFDRILVTAA 153 (212)
T ss_pred cccC---CCc--CCCcCEEEEccC
Confidence 6432 111 246999998753
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.92 E-value=0.063 Score=60.11 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=56.3
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+++.++|...|.|-.+..++++. ++.+++|+|.+++|++.|+ +.+ +.|++++++++.+.. +.. -.++|.|+.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~~--~~~FDLIVS 325 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MPS--EGKWDIIVS 325 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--ccc--CCCccEEEE
Confidence 46789999999999999999875 6789999999999999984 443 457999998864321 111 136888888
Q ss_pred c
Q psy2380 320 D 320 (733)
Q Consensus 320 D 320 (733)
|
T Consensus 326 N 326 (423)
T PRK14966 326 N 326 (423)
T ss_pred C
Confidence 6
No 114
>PRK14967 putative methyltransferase; Provisional
Probab=94.78 E-value=0.1 Score=53.62 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++++.++|.-.|.|.-+..+.+. + ..+++++|+|+++++.++ ++. +.+++++++++.+ .++. +++|.|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~---~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF---RPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC---CCeeEEE
Confidence 56789999999999998888764 2 359999999999999884 432 3357788877654 2222 4799999
Q ss_pred EcCCCC
Q psy2380 319 FDLGIS 324 (733)
Q Consensus 319 ~DLGvs 324 (733)
.|-.+.
T Consensus 107 ~npPy~ 112 (223)
T PRK14967 107 SNPPYV 112 (223)
T ss_pred ECCCCC
Confidence 987654
No 115
>PRK06922 hypothetical protein; Provisional
Probab=94.77 E-value=0.066 Score=62.83 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=58.8
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
.+++.++|.-+|.|..+..+.+.. |+++++|+|.++.+++.|+ +.. ..++.+++++..++...++. +++|.|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fed---eSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEK---ESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCC---CCEEEEE
Confidence 357899999999999999998886 7899999999999999984 443 35688888876665443332 4689888
Q ss_pred Ec
Q psy2380 319 FD 320 (733)
Q Consensus 319 ~D 320 (733)
+.
T Consensus 493 sn 494 (677)
T PRK06922 493 YS 494 (677)
T ss_pred Ec
Confidence 65
No 116
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.76 E-value=0.12 Score=55.31 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=46.5
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCcc
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFT 300 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~ 300 (733)
...++|...|.|.-+..+++.. ++.+++|+|++++|++.|+ +.. .+|++++++++.
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 3689999999999999999886 6789999999999999984 332 356888888753
No 117
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.75 E-value=0.086 Score=55.30 Aligned_cols=90 Identities=10% Similarity=0.107 Sum_probs=66.2
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHH
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~ 307 (733)
...++++.+.. .+++.++|.-.|.|.-+..+.++. |+++|+|+|.++++++.|++ .+++++++...++. .
T Consensus 17 ~~~~ll~~l~~---~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~---~~~~~~~~d~~~~~---~ 86 (255)
T PRK14103 17 PFYDLLARVGA---ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE---RGVDARTGDVRDWK---P 86 (255)
T ss_pred HHHHHHHhCCC---CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh---cCCcEEEcChhhCC---C
Confidence 34567777765 678899999999999999999886 77899999999999999843 24666666654431 1
Q ss_pred hCCCCcccEEEEcCCCCccccCCCC
Q psy2380 308 KYNIKKIDGILFDLGISSNQINNEL 332 (733)
Q Consensus 308 ~~~~~~~dgil~DLGvss~q~~~~~ 332 (733)
.+++|.|+.+..+ +++.+++
T Consensus 87 ---~~~fD~v~~~~~l--~~~~d~~ 106 (255)
T PRK14103 87 ---KPDTDVVVSNAAL--QWVPEHA 106 (255)
T ss_pred ---CCCceEEEEehhh--hhCCCHH
Confidence 1468888887654 3444443
No 118
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.71 E-value=0.08 Score=58.98 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
+++.++|.-.|.|..|.+++.. ..+|+|+|+|++|++.|+ +.+ -+++++++++..+.. ... ..++|.|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~---~~~-~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA---TAQ-MSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---Hhc-CCCCCEEE
Confidence 4678999999999999999854 468999999999999984 432 247889988875542 221 13589999
Q ss_pred Ec
Q psy2380 319 FD 320 (733)
Q Consensus 319 ~D 320 (733)
+|
T Consensus 306 ~D 307 (374)
T TIGR02085 306 VN 307 (374)
T ss_pred EC
Confidence 98
No 119
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.64 E-value=0.17 Score=51.31 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=62.3
Q ss_pred hhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cc--cC--CCcEEEEccCcc
Q psy2380 226 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NK--IT--DSRFSIIHNCFT 300 (733)
Q Consensus 226 pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~--l~--~~r~~~~~~~f~ 300 (733)
|-+..|=.+.... .+++.+++|+-.|=|..|..+++. .+..+|+|+|..|+|++.. +. +. ++++..+++...
T Consensus 86 ~rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~ 162 (200)
T PF02475_consen 86 PRLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAR 162 (200)
T ss_dssp GGGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GG
T ss_pred cccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHH
Confidence 4444555444433 257899999999999999999985 3668899999999999987 33 32 578999998877
Q ss_pred chHHHHHhCCCCcccEEEEcCCCCcccc
Q psy2380 301 ELDIILKKYNIKKIDGILFDLGISSNQI 328 (733)
Q Consensus 301 ~~~~~l~~~~~~~~dgil~DLGvss~q~ 328 (733)
++.. + ..+|-|+++|=-+|..+
T Consensus 163 ~~~~--~----~~~drvim~lp~~~~~f 184 (200)
T PF02475_consen 163 EFLP--E----GKFDRVIMNLPESSLEF 184 (200)
T ss_dssp G-----T----T-EEEEEE--TSSGGGG
T ss_pred HhcC--c----cccCEEEECChHHHHHH
Confidence 7644 1 46899999997777654
No 120
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.63 E-value=0.059 Score=55.71 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=42.5
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc----ccC---------CCcEEEEccCccchHHHHHhCCC
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN----KIT---------DSRFSIIHNCFTELDIILKKYNI 311 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~----~l~---------~~r~~~~~~~f~~~~~~l~~~~~ 311 (733)
..++|||+|-|.+|.-+. .+ +++|++++++|-.-...+ +.. ..|++++++++.+.-. ...
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CEEEECCCcchHHHHHHH-cc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 389999999999998776 45 568999999997655431 111 1489999999988433 222
Q ss_pred CcccEEEEc
Q psy2380 312 KKIDGILFD 320 (733)
Q Consensus 312 ~~~dgil~D 320 (733)
.++|.|-||
T Consensus 150 ~s~DVVY~D 158 (234)
T PF04445_consen 150 NSFDVVYFD 158 (234)
T ss_dssp S--SEEEE-
T ss_pred CCCCEEEEC
Confidence 579999999
No 121
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.58 E-value=0.11 Score=51.64 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=51.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCc---------EEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHHHH
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKG---------RLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~---------~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~l~ 307 (733)
+++.+++|-.+|.|.=..+-+... .+. +++|+|+|+++++.| ++++ ++.+.+.+..|.++. +.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~~ 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--LP 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--GT
T ss_pred CCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--cc
Confidence 678899999999998765544332 333 499999999999998 4563 467899998999887 21
Q ss_pred hCCCCcccEEEEcCCC
Q psy2380 308 KYNIKKIDGILFDLGI 323 (733)
Q Consensus 308 ~~~~~~~dgil~DLGv 323 (733)
-+++|.|+.|.=|
T Consensus 104 ---~~~~d~IvtnPPy 116 (179)
T PF01170_consen 104 ---DGSVDAIVTNPPY 116 (179)
T ss_dssp ---TSBSCEEEEE--S
T ss_pred ---cCCCCEEEECcch
Confidence 1479999988644
No 122
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.11 Score=57.33 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=63.9
Q ss_pred hhhcccccCCCEEEEEccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHh----cccCCCcEEEEccCccchHHHHHhC
Q psy2380 235 WLNIENERINGIYIDATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLG----NKITDSRFSIIHNCFTELDIILKKY 309 (733)
Q Consensus 235 ~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~-~~~l~~~D~D~~a~~~a----~~l~~~r~~~~~~~f~~~~~~l~~~ 309 (733)
.+.+ +||..++|++.+-||=|..|++.+.. .+.|+|+|+|+.=++.- +|+--.++..++..-+.+.+.....
T Consensus 151 ~L~p---~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 151 VLDP---KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HcCC---CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence 4456 88999999999999999999999855 35569999999877764 3443344777777666655444322
Q ss_pred CCCcccEEEEcCCCCc
Q psy2380 310 NIKKIDGILFDLGISS 325 (733)
Q Consensus 310 ~~~~~dgil~DLGvss 325 (733)
.++|-||+|==+|+
T Consensus 228 --~~fD~iLlDaPCSg 241 (355)
T COG0144 228 --EKFDRILLDAPCSG 241 (355)
T ss_pred --CcCcEEEECCCCCC
Confidence 25999999976665
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=94.56 E-value=0.1 Score=55.89 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=87.5
Q ss_pred CCCEEEEEccCCChhHHHHHH-HcCCCcEEEEEeCCHHHHHHhccc-C-----CCcEEEEccCccchHHHHHhCCCCccc
Q psy2380 243 INGIYIDATFGQGGHSCKILE-RLGKKGRLIAIDKDTESVSLGNKI-T-----DSRFSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~-~~~~~~~l~~~D~D~~a~~~a~~l-~-----~~r~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
++..++|.=.|.||-|..++. ...|+++++++|+|+++++.|++. . .+|++|..+|-.+... . ..++|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---~--l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---S--LKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc---c--cCCcC
Confidence 457899999998888877775 456899999999999999999543 1 4689999988766321 1 24799
Q ss_pred EEEEcCCCCccccCCC--C----CCcccC-CCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHHHHHHHH
Q psy2380 316 GILFDLGISSNQINNE--L----RGFSFL-LDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIV 388 (733)
Q Consensus 316 gil~DLGvss~q~~~~--~----rGfs~~-~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~~i~ 388 (733)
.|+.+ .-..+|.+ + +=.... .+|-|=||+- ..+..+|...-..+..+-|+.|+.-+=.-.+-+.++
T Consensus 198 lVF~~---ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~----~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi 270 (296)
T PLN03075 198 VVFLA---ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA----HGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVI 270 (296)
T ss_pred EEEEe---cccccccccHHHHHHHHHHhcCCCcEEEEecc----cchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEE
Confidence 99999 44444422 1 112223 3667777772 233446655433333336666665443444444444
Q ss_pred HHhc
Q psy2380 389 HYRS 392 (733)
Q Consensus 389 ~~r~ 392 (733)
=.|+
T Consensus 271 ~~r~ 274 (296)
T PLN03075 271 IARK 274 (296)
T ss_pred EEEe
Confidence 4444
No 124
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.55 E-value=0.11 Score=54.93 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=57.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
+++..++|.-.|.|..+..+++..++.++|+|+|.++++++.|+ +.. -++++++++++.++. + .-+.+|.|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--~---~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--V---ADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--C---CCCceeEE
Confidence 57889999999998778777877778889999999999999985 332 257888888776543 1 11368888
Q ss_pred EEcC
Q psy2380 318 LFDL 321 (733)
Q Consensus 318 l~DL 321 (733)
+.+.
T Consensus 151 i~~~ 154 (272)
T PRK11873 151 ISNC 154 (272)
T ss_pred EEcC
Confidence 8663
No 125
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.55 E-value=0.13 Score=53.99 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=61.5
Q ss_pred HhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCcc
Q psy2380 223 IMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFT 300 (733)
Q Consensus 223 ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~ 300 (733)
+..+.+.+++++.+.. .+++.++|.=.|.|..|..|+++. + +|+++|.|+++++.++ ++. .++++++++++.
T Consensus 12 l~d~~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~-~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~ 85 (253)
T TIGR00755 12 LIDESVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRA-K--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDAL 85 (253)
T ss_pred CCCHHHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhC-C--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchh
Confidence 4456677888888876 678899999999999999999985 3 5999999999999984 443 468999999886
Q ss_pred chH
Q psy2380 301 ELD 303 (733)
Q Consensus 301 ~~~ 303 (733)
+++
T Consensus 86 ~~~ 88 (253)
T TIGR00755 86 KVD 88 (253)
T ss_pred cCC
Confidence 654
No 126
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.46 E-value=0.19 Score=53.24 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=60.9
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCccchHHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~~~~~~l~ 307 (733)
.++++.+.. +++..++|.-.|.|+-+..+++.. .++|+|+|.++++++.|+ +.. .+++.+.+.++.+..
T Consensus 42 ~~~l~~l~l---~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---- 112 (263)
T PTZ00098 42 TKILSDIEL---NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---- 112 (263)
T ss_pred HHHHHhCCC---CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC----
Confidence 556666665 788899999999999999988764 579999999999999985 443 467888888775431
Q ss_pred hCCCCcccEEEE
Q psy2380 308 KYNIKKIDGILF 319 (733)
Q Consensus 308 ~~~~~~~dgil~ 319 (733)
..-.++|.|+.
T Consensus 113 -~~~~~FD~V~s 123 (263)
T PTZ00098 113 -FPENTFDMIYS 123 (263)
T ss_pred -CCCCCeEEEEE
Confidence 11146888876
No 127
>PRK04457 spermidine synthase; Provisional
Probab=94.36 E-value=0.11 Score=54.95 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=58.5
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
...++|.=+|+|.-+..+++.. |+++++++|+||++++.|+ .+. ++|+++++++..+ +++... +++|.|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~---~l~~~~-~~yD~I~ 141 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE---YIAVHR-HSTDVIL 141 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH---HHHhCC-CCCCEEE
Confidence 4678999999999999999886 7899999999999999995 442 3789999887654 344332 4799999
Q ss_pred EcC
Q psy2380 319 FDL 321 (733)
Q Consensus 319 ~DL 321 (733)
+|.
T Consensus 142 ~D~ 144 (262)
T PRK04457 142 VDG 144 (262)
T ss_pred EeC
Confidence 984
No 128
>PLN02476 O-methyltransferase
Probab=94.35 E-value=0.22 Score=53.03 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=63.2
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccch-HHHHHhCCCCccc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTEL-DIILKKYNIKKID 315 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~-~~~l~~~~~~~~d 315 (733)
.+.+.++|.--|.|.=|..+++.++++++|+++|+|++..+.|+ .++ +++++++++...+. .++..+...+++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 34679999999999999999999888999999999999999994 443 46899999987653 3322211125799
Q ss_pred EEEEcCC
Q psy2380 316 GILFDLG 322 (733)
Q Consensus 316 gil~DLG 322 (733)
.|++|--
T Consensus 197 ~VFIDa~ 203 (278)
T PLN02476 197 FAFVDAD 203 (278)
T ss_pred EEEECCC
Confidence 9999953
No 129
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=94.32 E-value=1.7 Score=49.69 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=39.0
Q ss_pred hccc-hhHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCHHHHHHHhh
Q psy2380 72 QMRE-GSLSCLSYADRLMEFPTTLLG-VTFNTILLPNLSKARIENNTEEYSAILD 124 (733)
Q Consensus 72 ~l~~-g~v~~l~~A~~L~~lP~~i~~-~ai~tvllP~lS~~~a~~d~~~~~~~l~ 124 (733)
.++. .+.-+|+.|.++.++..++++ .+++++++|.+++.. ++++++.++..+
T Consensus 4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~ 57 (451)
T PF03023_consen 4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFIS 57 (451)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHH
Confidence 3443 456688899999999988775 689999999999988 666666544443
No 130
>PHA03411 putative methyltransferase; Provisional
Probab=94.31 E-value=0.15 Score=54.07 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=58.0
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
++.+.++|...|.|.-+..++++. +..+|+|+|.|+++++.++ ++ +++.++++++.+.. .. .++|.|+.|
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~---~~---~kFDlIIsN 133 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFE---SN---EKFDVVISN 133 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhc---cc---CCCcEEEEc
Confidence 446789999999999999998875 4579999999999999985 43 46888888876542 11 368999988
Q ss_pred CCCC
Q psy2380 321 LGIS 324 (733)
Q Consensus 321 LGvs 324 (733)
-=+-
T Consensus 134 PPF~ 137 (279)
T PHA03411 134 PPFG 137 (279)
T ss_pred CCcc
Confidence 5443
No 131
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.24 E-value=0.24 Score=50.77 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=65.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.+.+.++...-+.|-=|..|+..++++++++.+|+|++-.+.|+ .++ ++|++++.+ -+--+.++...-+++|.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~--gdal~~l~~~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG--GDALDVLSRLLDGSFDL 135 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec--CcHHHHHHhccCCCccE
Confidence 45689999999999999999999977999999999999999995 453 577888886 45455565533468999
Q ss_pred EEEcCCCCc
Q psy2380 317 ILFDLGISS 325 (733)
Q Consensus 317 il~DLGvss 325 (733)
|+.|=.=+.
T Consensus 136 iFIDadK~~ 144 (219)
T COG4122 136 VFIDADKAD 144 (219)
T ss_pred EEEeCChhh
Confidence 999966543
No 132
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.19 E-value=0.16 Score=58.82 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
++..++|.-.|.|.-+..+++.. |+++++|+|++++|++.|+ +.. .+|++++++++-+ .+. -.++|.|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~---~~~---~~~fDlI 210 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE---NIE---KQKFDFI 210 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh---hCc---CCCccEE
Confidence 34689999999999999999886 6789999999999999984 432 4689999887532 111 1368999
Q ss_pred EEcCCCC
Q psy2380 318 LFDLGIS 324 (733)
Q Consensus 318 l~DLGvs 324 (733)
+.|-=|-
T Consensus 211 vsNPPYi 217 (506)
T PRK01544 211 VSNPPYI 217 (506)
T ss_pred EECCCCC
Confidence 8886544
No 133
>KOG1347|consensus
Probab=94.18 E-value=0.59 Score=53.75 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhCCHHH
Q psy2380 40 IAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEF-PTTLLGVTFNTILLPNLSKARIENNTEE 118 (733)
Q Consensus 40 ~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~l-P~~i~~~ai~tvllP~lS~~~a~~d~~~ 118 (733)
...|+++.++.|.++......+..++++.++|.+++-+.+....++...+. ..++ ..-+++++=|.-++++-.++...
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~-~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSI-LLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHH-hhccchhhhcchHhhhcccccch
Confidence 567999999999999999999999999999998876565555544444443 2222 24445555555555555544444
Q ss_pred HHHHhhh-------------------------------------------------------------------------
Q psy2380 119 YSAILDW------------------------------------------------------------------------- 125 (733)
Q Consensus 119 ~~~~l~~------------------------------------------------------------------------- 125 (733)
....+++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 3222211
Q ss_pred ----------------cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHh------cccCchhhHHHHHHHHHHHHHHHHHH
Q psy2380 126 ----------------IPIFAHSGLALSIGLGACLHASFLYWYLRHKR------IYIPCAGWGVFFIRLVIALLLLVIVA 183 (733)
Q Consensus 126 ----------------ip~~Gi~GaalAt~is~~v~~iL~~~~l~r~i------~~~~~~~~~~~~~k~~lAs~iM~ivv 183 (733)
.+.+|..|++++..+++++....+.+++.-.- ++.....-++.+.+..+++.+|...=
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~miclE 263 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVMICLE 263 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchheeHHH
Confidence 13578899999999999999988877766532 11111122357788888899887543
Q ss_pred HHHHHhHhh-hhcCcccHHHHHHHHHHHHHHHHHHHH
Q psy2380 184 LWGNSYFNW-LGMQAHPIFRIVALLLILLFCGITYFL 219 (733)
Q Consensus 184 ~~i~~~l~~-~~~~~~~~~~li~l~i~v~iG~ivY~~ 219 (733)
|+.+..+.. .+..+.+...+....++.-++...|-.
T Consensus 264 ~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~ 300 (473)
T KOG1347|consen 264 WWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMI 300 (473)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 333332211 111111223444444555555555543
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.18 E-value=0.22 Score=50.69 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-cC----CCcEEEEccCccch-HHHHHhCCCCcccEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-IT----DSRFSIIHNCFTEL-DIILKKYNIKKIDGI 317 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l~----~~r~~~~~~~f~~~-~~~l~~~~~~~~dgi 317 (733)
.+.++..--+.|-=|..+++.++++++|+.+|.|++-.+.|++ ++ ++|+++++++-.+. +++..+...+++|.|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 3689999999999999999999889999999999999999953 32 57999999987664 333333323579999
Q ss_pred EEcCCCC
Q psy2380 318 LFDLGIS 324 (733)
Q Consensus 318 l~DLGvs 324 (733)
++|-.=+
T Consensus 126 FiDa~K~ 132 (205)
T PF01596_consen 126 FIDADKR 132 (205)
T ss_dssp EEESTGG
T ss_pred EEccccc
Confidence 9997543
No 135
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.16 E-value=0.31 Score=48.24 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=52.8
Q ss_pred HHHHHhhhhccccc--CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccC------cc
Q psy2380 229 LNEAINWLNIENER--INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNC------FT 300 (733)
Q Consensus 229 l~Evl~~L~~~~~~--~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~------f~ 300 (733)
+.|+.+.++. ++ ++..++|...+-||=|..++++..+.++|+|+|.-+..-- ..+..++++ ..
T Consensus 9 L~ei~~~~~~--~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-------~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 9 LYEIDEKFKI--FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-------QNVSFIQGDITNPENIK 79 (181)
T ss_dssp HHHHHHTTSS--S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--------TTEEBTTGGGEEEEHSH
T ss_pred HHHHHHHCCC--CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-------cceeeeecccchhhHHH
Confidence 4566666651 13 3589999999999999999999767899999999977111 223333333 33
Q ss_pred chHHHHHhCCCCcccEEEEcC
Q psy2380 301 ELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 301 ~~~~~l~~~~~~~~dgil~DL 321 (733)
++.+.+.+ ...++|.|+-|.
T Consensus 80 ~i~~~~~~-~~~~~dlv~~D~ 99 (181)
T PF01728_consen 80 DIRKLLPE-SGEKFDLVLSDM 99 (181)
T ss_dssp HGGGSHGT-TTCSESEEEE--
T ss_pred hhhhhccc-cccCcceecccc
Confidence 34444432 125799999998
No 136
>KOG1663|consensus
Probab=94.11 E-value=0.22 Score=50.95 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc---C--CCcEEEEccC-ccchHHHHHhCCCCcccEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI---T--DSRFSIIHNC-FTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l---~--~~r~~~~~~~-f~~~~~~l~~~~~~~~dgi 317 (733)
.++.+|.=.=.|--+.+....++++|+|+++|+|+++.+.+.++ + +..++++++. =..+++.++..+.+.+|.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 35677765556777888888999999999999999999998543 2 5689999986 4457888887777788888
Q ss_pred EEc
Q psy2380 318 LFD 320 (733)
Q Consensus 318 l~D 320 (733)
++|
T Consensus 154 FvD 156 (237)
T KOG1663|consen 154 FVD 156 (237)
T ss_pred EEc
Confidence 887
No 137
>PRK15099 O-antigen translocase; Provisional
Probab=93.96 E-value=1.1 Score=50.11 Aligned_cols=53 Identities=13% Similarity=0.015 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCchhhHHHHHHHHHHHHHHHHH
Q psy2380 130 AHSGLALSIGLGACLHASFLYWYLRHKRI-------YIPCAGWGVFFIRLVIALLLLVIV 182 (733)
Q Consensus 130 Gi~GaalAt~is~~v~~iL~~~~l~r~i~-------~~~~~~~~~~~~k~~lAs~iM~iv 182 (733)
|+.|+++|++++..+.+++.++.++|+.. .+.+....+.+.+..+...++.+.
T Consensus 171 Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~ 230 (416)
T PRK15099 171 GYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVT 230 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777666654422 122334456666666665555443
No 138
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.89 E-value=0.17 Score=54.72 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=51.4
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHH
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDII 305 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~ 305 (733)
++..++|.-.|.|-.|..+++.+.+..+++|+|+++++++.| +++. .-++..++++|.+....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 467899999999999999999985468999999999999998 5663 23577788888765333
No 139
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.85 E-value=0.27 Score=50.04 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=43.0
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCc
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCF 299 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f 299 (733)
+++.++|.-.|.|..+..+.+.. +.++++|+|.++++++.|+ ++. ++.+.+++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~--~~~~~~~d~ 97 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP--NINIIQGSL 97 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC--CCcEEEeec
Confidence 46789999999999999999876 6789999999999999995 342 344444443
No 140
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.83 E-value=0.22 Score=50.51 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=58.3
Q ss_pred ccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccc---hHHHHHhCCCCcccEE
Q psy2380 241 ERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTE---LDIILKKYNIKKIDGI 317 (733)
Q Consensus 241 ~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~---~~~~l~~~~~~~~dgi 317 (733)
++++..+||...=-||+|+-..++++++++|+|+|.||-..- ..+.++++.|.+ +.++.+..+-.++|.|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 356899999999999999999999999999999999974322 348888888875 4455566665567888
Q ss_pred EEcC
Q psy2380 318 LFDL 321 (733)
Q Consensus 318 l~DL 321 (733)
+=|.
T Consensus 116 ~sD~ 119 (205)
T COG0293 116 LSDM 119 (205)
T ss_pred EecC
Confidence 7664
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=93.83 E-value=0.25 Score=49.93 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccc-hHHHHHhCCCCcccEEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTE-LDIILKKYNIKKIDGIL 318 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~-~~~~l~~~~~~~~dgil 318 (733)
..++||.-+|.|.|..+++++. |+..++|+|+....+..+ ++.. -+++.+++++-.+ +..+++. +++|.|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~---~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPP---GSVDRIY 93 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTT---TSEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccC---CchheEE
Confidence 4499999999999999999996 889999999999999998 4432 4789999998777 4444442 4788887
Q ss_pred EcC
Q psy2380 319 FDL 321 (733)
Q Consensus 319 ~DL 321 (733)
+.+
T Consensus 94 i~F 96 (195)
T PF02390_consen 94 INF 96 (195)
T ss_dssp EES
T ss_pred EeC
Confidence 764
No 142
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.81 E-value=0.19 Score=51.01 Aligned_cols=83 Identities=13% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHH
Q psy2380 231 EAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIIL 306 (733)
Q Consensus 231 Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l 306 (733)
.+++.+.. ..++..++|+-.|.|.=+.+.|.+. ..+|+++|+|++|++.+ ++++ -+++++++++..+ .+
T Consensus 43 ~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~---~l 115 (199)
T PRK10909 43 TLFNWLAP--VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALS---FL 115 (199)
T ss_pred HHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHH---HH
Confidence 34555532 1356799999999999988777663 36999999999999988 3443 2478888887643 33
Q ss_pred HhCCCCcccEEEEcC
Q psy2380 307 KKYNIKKIDGILFDL 321 (733)
Q Consensus 307 ~~~~~~~~dgil~DL 321 (733)
+... .++|.|++|=
T Consensus 116 ~~~~-~~fDlV~~DP 129 (199)
T PRK10909 116 AQPG-TPHNVVFVDP 129 (199)
T ss_pred hhcC-CCceEEEECC
Confidence 3221 3589888763
No 143
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=93.61 E-value=0.24 Score=52.78 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=53.6
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELD 303 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~ 303 (733)
++-+++.+.. +||..++|.-.|.||=+..+.++. +++|.|+..+++-.+.++ +.. .+++++...+|.+++
T Consensus 51 ~~~~~~~~~l---~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 51 LDLLCEKLGL---KPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 3445666665 899999999999999999999997 689999999999999984 432 578999999988765
Q ss_pred HHHHhCCCCcccEEE
Q psy2380 304 IILKKYNIKKIDGIL 318 (733)
Q Consensus 304 ~~l~~~~~~~~dgil 318 (733)
. ++|.|+
T Consensus 126 ~--------~fD~Iv 132 (273)
T PF02353_consen 126 G--------KFDRIV 132 (273)
T ss_dssp ---------S-SEEE
T ss_pred C--------CCCEEE
Confidence 4 577754
No 144
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.56 E-value=0.28 Score=56.28 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=65.1
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIIL 306 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l 306 (733)
+++++.+.. +++..++|...|.|+++..+++.. +++++|+|.++++++.|+ +.. ..+++++++++.+.. +
T Consensus 256 e~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--~ 328 (475)
T PLN02336 256 KEFVDKLDL---KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--Y 328 (475)
T ss_pred HHHHHhcCC---CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--C
Confidence 445555554 667899999999999999998875 579999999999999984 432 457899888876542 1
Q ss_pred HhCCCCcccEEEEcCCCCccccCCCC
Q psy2380 307 KKYNIKKIDGILFDLGISSNQINNEL 332 (733)
Q Consensus 307 ~~~~~~~~dgil~DLGvss~q~~~~~ 332 (733)
. -+++|.|+... +-.++.++.
T Consensus 329 ~---~~~fD~I~s~~--~l~h~~d~~ 349 (475)
T PLN02336 329 P---DNSFDVIYSRD--TILHIQDKP 349 (475)
T ss_pred C---CCCEEEEEECC--cccccCCHH
Confidence 1 13688887642 234454443
No 145
>PLN02244 tocopherol O-methyltransferase
Probab=93.41 E-value=0.32 Score=53.45 Aligned_cols=86 Identities=14% Similarity=0.226 Sum_probs=62.1
Q ss_pred hHHHHHhhhhcc--cccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc-C----CCcEEEEccCcc
Q psy2380 228 FLNEAINWLNIE--NERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-T----DSRFSIIHNCFT 300 (733)
Q Consensus 228 ll~Evl~~L~~~--~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l-~----~~r~~~~~~~f~ 300 (733)
+++++++.+... ..++++.++|.-.|.|+.+..+.++. +++|+|+|.++++++.+++. . .+++++++++..
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 445566555310 01356799999999999999999886 57999999999999988532 2 357899888876
Q ss_pred chHHHHHhCCCCcccEEEEc
Q psy2380 301 ELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 301 ~~~~~l~~~~~~~~dgil~D 320 (733)
++. ..-+++|.|+..
T Consensus 179 ~~~-----~~~~~FD~V~s~ 193 (340)
T PLN02244 179 NQP-----FEDGQFDLVWSM 193 (340)
T ss_pred cCC-----CCCCCccEEEEC
Confidence 642 112468988763
No 146
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.38 E-value=0.35 Score=41.37 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=49.2
Q ss_pred EEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcC
Q psy2380 248 IDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 248 vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DL 321 (733)
+|.=.|.|-.+..+.++ +..+++|+|.++++++.++ +....+..+.+.++.++. ++ -+++|.|+..-
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--FP---DNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--S----TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--cc---ccccccccccc
Confidence 57788988888888877 6789999999999999995 455567778988888872 22 14789886543
No 147
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=93.30 E-value=0.094 Score=50.17 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHhhh
Q psy2380 51 PSVFSVFAAQISLMLNTNIASQMREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYSAILDW 125 (733)
Q Consensus 51 Piil~~~v~qi~~~iD~~ias~l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~~~l~~ 125 (733)
|..+...+.++...+|+.+.+.+++.+++.+..+.++.++-.. +..++++.+-|.+|+.+.++|.+++++.+++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~ 74 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGDYKRAKKVVRQ 74 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSSTTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh-hcccccccccceeeccccccccccccccccc
Confidence 8889999999999999999999988899999999999998865 6799999999999999999998887766554
No 148
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.78 E-value=0.32 Score=48.94 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 287 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l 287 (733)
.|+++..+. -+.+..+|.-.|.|.+|..++++ +-.|.|+|+++.|++.++++
T Consensus 20 s~v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 20 SEVLEAVPL---LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRL 71 (192)
T ss_dssp HHHHHHCTT---S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhh---cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHH
Confidence 456666554 45689999999999999999987 56899999999999987544
No 149
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.68 E-value=0.3 Score=55.32 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=65.5
Q ss_pred hhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-cc--C-CCcEEEEccCccc
Q psy2380 226 FLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KI--T-DSRFSIIHNCFTE 301 (733)
Q Consensus 226 pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l--~-~~r~~~~~~~f~~ 301 (733)
..|.+.+++++.. .++..++|+..|.|.=|..+.++ ..+|+|+|..++|++.|+ +. . -++++++.+.=.+
T Consensus 279 ekl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 279 EKLYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 4577888888887 67789999999999999999965 468999999999999994 32 2 2458888776444
Q ss_pred hHHHHHhCCCCcccEEEEc
Q psy2380 302 LDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 302 ~~~~l~~~~~~~~dgil~D 320 (733)
+..-.. ....+|.|++|
T Consensus 353 ~~~~~~--~~~~~d~VvvD 369 (432)
T COG2265 353 FTPAWW--EGYKPDVVVVD 369 (432)
T ss_pred Hhhhcc--ccCCCCEEEEC
Confidence 333222 11368999987
No 150
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=92.40 E-value=0.98 Score=52.67 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=37.0
Q ss_pred CCEEEEEccCCChhHHHHHHHcCC-------CcEEEEEeCCHHHHHHhc-cc
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGK-------KGRLIAIDKDTESVSLGN-KI 287 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~-------~~~l~~~D~D~~a~~~a~-~l 287 (733)
...++|-++|.|+=..++++++.. ...++|+|+|+++++.++ ++
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 458999999999999999988731 257899999999999984 54
No 151
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.39 E-value=0.53 Score=52.62 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCcc
Q psy2380 231 EAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFT 300 (733)
Q Consensus 231 Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~ 300 (733)
.+++.+.. +++..++|.-.|.|+-+..++++. +++|+|+|.++++++.|+ +..+.++++...++.
T Consensus 158 ~l~~~l~l---~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~ 223 (383)
T PRK11705 158 LICRKLQL---KPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR 223 (383)
T ss_pred HHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence 34455554 678899999999999999998875 579999999999999994 443334556555543
No 152
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=92.29 E-value=0.62 Score=48.88 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=59.2
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCC--CCcccE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYN--IKKIDG 316 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~--~~~~dg 316 (733)
.+.++..--+.|-=|..+++.++++++|+++|+|++..+.|+ .++ .++++++++...+.-.-+...+ -+++|.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 357888777888888889988888999999999999999884 342 5799999998766432232212 147999
Q ss_pred EEEcC
Q psy2380 317 ILFDL 321 (733)
Q Consensus 317 il~DL 321 (733)
|++|=
T Consensus 160 iFiDa 164 (247)
T PLN02589 160 IFVDA 164 (247)
T ss_pred EEecC
Confidence 99993
No 153
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=92.12 E-value=0.34 Score=48.83 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc-CC---CcEEEEccCccc
Q psy2380 231 EAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-TD---SRFSIIHNCFTE 301 (733)
Q Consensus 231 Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l-~~---~r~~~~~~~f~~ 301 (733)
++++.+.. .+++.++|.-.|.|.++..++++ +.+|+|+|.++++++.+++. .. +++++...++.+
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~ 89 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN 89 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh
Confidence 44555555 56789999999999999999875 46899999999999998533 21 235555555443
No 154
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.08 E-value=0.23 Score=54.90 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=48.5
Q ss_pred hhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccc
Q psy2380 227 LFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTE 301 (733)
Q Consensus 227 vll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~ 301 (733)
.|.+.+++++.+ .++ .++|.=.|-|..|..+.++. .+|+|+|.+++|++.|+ +.+ -+++++++++=++
T Consensus 184 ~l~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 184 KLYEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 456777888876 554 78999999999999998764 58999999999999984 332 2578888765333
No 155
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=92.02 E-value=0.26 Score=49.57 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
-+++++.+.. .+++.++|.-.|.|..+..+.++ +.+|+|+|.++++++.++
T Consensus 19 ~~~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 19 HSAVREAVKT---VAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVL 69 (195)
T ss_pred hHHHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHH
Confidence 3566667665 56789999999999999999875 468999999999999874
No 156
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=91.96 E-value=0.58 Score=47.76 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=57.2
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
+..++|.-.|.|..+..+++.. ++.+++++|.++++++.++ ++. +++.++.++..+... . -+++|.|+.+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~--~---~~~fD~vi~~~~ 107 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPL--E---DSSFDLIVSNLA 107 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCC--C---CCceeEEEEhhh
Confidence 4689999999999999999886 7788999999999999884 443 478888887765431 1 146899887754
Q ss_pred C
Q psy2380 323 I 323 (733)
Q Consensus 323 v 323 (733)
.
T Consensus 108 l 108 (240)
T TIGR02072 108 L 108 (240)
T ss_pred h
Confidence 3
No 157
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.45 Score=50.87 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=51.8
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--C-CcEEEEccC-ccchHHHHHhCCCCcccEEEEc
Q psy2380 246 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--D-SRFSIIHNC-FTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 246 ~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~-~r~~~~~~~-f~~~~~~l~~~~~~~~dgil~D 320 (733)
.++|...|.|==+.+++... |+.+|+|.|++++|++.|+ +.. + .|+.+++++ |+.+.. ++|.|++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--------~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--------KFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--------ceeEEEeC
Confidence 79999999999999999986 7799999999999999983 332 2 456665553 444322 68888876
Q ss_pred C
Q psy2380 321 L 321 (733)
Q Consensus 321 L 321 (733)
=
T Consensus 184 P 184 (280)
T COG2890 184 P 184 (280)
T ss_pred C
Confidence 4
No 158
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=91.78 E-value=0.72 Score=51.18 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=44.8
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccch
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTEL 302 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~ 302 (733)
+.++|.-.|.|.-|.++.+.. .+|+|+|.+++|++.|+ +.. -+++++++++..+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 569999999999999888764 38999999999999984 442 24788988887553
No 159
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=91.70 E-value=0.4 Score=48.03 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=55.9
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHh
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKK 308 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~ 308 (733)
++++.+.+. +++.++|.-.|.|.++..+.+.. ...++|+|.++++++.+++ .+++++++++.+- +..
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~---~~~~~~~~d~~~~---l~~ 70 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA---RGVNVIQGDLDEG---LEA 70 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH---cCCeEEEEEhhhc---ccc
Confidence 455566554 46789999999999999988764 4578999999999998843 2466776665431 111
Q ss_pred CCCCcccEEEEcC
Q psy2380 309 YNIKKIDGILFDL 321 (733)
Q Consensus 309 ~~~~~~dgil~DL 321 (733)
..-+++|.|+...
T Consensus 71 ~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 71 FPDKSFDYVILSQ 83 (194)
T ss_pred cCCCCcCEEEEhh
Confidence 1124689888863
No 160
>PRK01581 speE spermidine synthase; Validated
Probab=91.58 E-value=0.45 Score=52.47 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc---c--------CCCcEEEEccCccchHHHHHhCCCC
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK---I--------TDSRFSIIHNCFTELDIILKKYNIK 312 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~---l--------~~~r~~~~~~~f~~~~~~l~~~~~~ 312 (733)
.+.+++.=.|.|+-.+++|+. ++..++.++|+|+++++.|++ | .++|++++.+.-.+ +++... +
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~---fL~~~~-~ 225 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE---FLSSPS-S 225 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH---HHHhcC-C
Confidence 357888888999999999976 466899999999999999964 2 25689888775443 454432 4
Q ss_pred cccEEEEcC
Q psy2380 313 KIDGILFDL 321 (733)
Q Consensus 313 ~~dgil~DL 321 (733)
++|.|+.|+
T Consensus 226 ~YDVIIvDl 234 (374)
T PRK01581 226 LYDVIIIDF 234 (374)
T ss_pred CccEEEEcC
Confidence 799999994
No 161
>PRK00811 spermidine synthase; Provisional
Probab=91.56 E-value=0.59 Score=50.00 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=57.4
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--------CCcEEEEccCccchHHHHHhCCCCcc
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--------DSRFSIIHNCFTELDIILKKYNIKKI 314 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--------~~r~~~~~~~f~~~~~~l~~~~~~~~ 314 (733)
.+.++|+=.|.|+-+..+|++ ++..+|.++|+|++.++.|+ .+. ++|++++++.-.+ +++.. -+++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~---~l~~~-~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK---FVAET-ENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH---HHhhC-CCcc
Confidence 468999999999999999976 35579999999999999995 341 4689998877544 44432 2479
Q ss_pred cEEEEcC
Q psy2380 315 DGILFDL 321 (733)
Q Consensus 315 dgil~DL 321 (733)
|.|+.|+
T Consensus 152 DvIi~D~ 158 (283)
T PRK00811 152 DVIIVDS 158 (283)
T ss_pred cEEEECC
Confidence 9999986
No 162
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=91.51 E-value=0.5 Score=51.01 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=51.9
Q ss_pred HHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccc
Q psy2380 232 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTE 301 (733)
Q Consensus 232 vl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~ 301 (733)
+++.+.. +++..++|.-.|.|..+.+++++. |+++++++|. |++++.++ ++. .+|++++.++|.+
T Consensus 141 l~~~~~~---~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 141 LLEEAKL---DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred HHHHcCC---CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 3444444 567899999999999999999997 7899999998 78888874 432 4689999998754
No 163
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=91.02 E-value=0.85 Score=48.38 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=50.9
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCC--cEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKK--GRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~--~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
++..++|.=.|.|.++..+.+.+++. ..++|+|.++++++.|+ +. +++.+..++..++. +. -+++|.|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp--~~---~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLP--FA---DQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCC--Cc---CCceeEEE
Confidence 45789999999999999999887432 47999999999999984 43 35666666655542 11 13577775
No 164
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=90.99 E-value=0.74 Score=50.69 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=50.7
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCC--cEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDS--RFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~--r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
..+.++|.-.|.|..+..++++. |+.+|+++|.++.|++.|+ +++.+ +.+++.++..+ .++ +++|.|+.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~---~~~----~~fDlIvs 267 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS---DIK----GRFDMIIS 267 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc---ccC----CCccEEEE
Confidence 45689999999999999999885 7789999999999999984 45322 23444443211 111 35788877
Q ss_pred cC
Q psy2380 320 DL 321 (733)
Q Consensus 320 DL 321 (733)
|-
T Consensus 268 NP 269 (342)
T PRK09489 268 NP 269 (342)
T ss_pred CC
Confidence 63
No 165
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.98 E-value=0.73 Score=46.06 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccC-ccchH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNC-FTELD 303 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~-f~~~~ 303 (733)
+-+.+++... .-++..++|+..|.|.=..+-|++- -.+++.+|+|++|++.. ++++ .+++++++.+ +..+.
T Consensus 30 ealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 30 EALFNILQPR-NLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp HHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred HHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 3455666651 0268899999999999999888773 35899999999999987 3443 4578888776 44444
Q ss_pred HHHHhCCCCcccEEEEcC
Q psy2380 304 IILKKYNIKKIDGILFDL 321 (733)
Q Consensus 304 ~~l~~~~~~~~dgil~DL 321 (733)
+.... -.++|-|++|=
T Consensus 107 ~~~~~--~~~fDiIflDP 122 (183)
T PF03602_consen 107 KLAKK--GEKFDIIFLDP 122 (183)
T ss_dssp HHHHC--TS-EEEEEE--
T ss_pred hhccc--CCCceEEEECC
Confidence 43222 25799999983
No 166
>PLN02366 spermidine synthase
Probab=90.83 E-value=0.95 Score=49.07 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=56.9
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-c-------CCCcEEEEccCccchHHHHHhCCCCccc
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-I-------TDSRFSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l-------~~~r~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
.+.++|.=.|.|+=.+++++. ++..++..+|+|++.++.|++ + .++|++++.+.-.+ ++++..-+++|
T Consensus 92 pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~---~l~~~~~~~yD 167 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE---FLKNAPEGTYD 167 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH---HHhhccCCCCC
Confidence 467899999999999999976 455799999999999999953 3 24699999876433 44443224799
Q ss_pred EEEEcC
Q psy2380 316 GILFDL 321 (733)
Q Consensus 316 gil~DL 321 (733)
.|+.|+
T Consensus 168 vIi~D~ 173 (308)
T PLN02366 168 AIIVDS 173 (308)
T ss_pred EEEEcC
Confidence 999986
No 167
>PHA03412 putative methyltransferase; Provisional
Probab=90.72 E-value=0.6 Score=48.47 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=52.1
Q ss_pred CCEEEEEccCCChhHHHHHHHcC--CCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 244 NGIYIDATFGQGGHSCKILERLG--KKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~--~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
++.++|...|.|.=+.+++++.. +..+|+|+|+|+.|++.|++.. .++.++++++.+.. + ..++|.|+-|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-~~~~~~~~D~~~~~--~----~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-PEATWINADALTTE--F----DTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-cCCEEEEcchhccc--c----cCCccEEEEC
Confidence 57999999999999999988742 4679999999999999995321 35778887765422 1 1256777654
No 168
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=90.68 E-value=0.77 Score=51.57 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----C-CcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----D-SRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~-~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
+++.++|+-.|.|+=+.+.+. ....+|+++|+|+.|++.|+ ++. + +++++++++..+.-+-+...+ .++|.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~-~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG-EKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcC-CCCCE
Confidence 467899999999997766553 34469999999999999984 442 2 478899887543221121111 36999
Q ss_pred EEEc
Q psy2380 317 ILFD 320 (733)
Q Consensus 317 il~D 320 (733)
|++|
T Consensus 297 VilD 300 (396)
T PRK15128 297 IVMD 300 (396)
T ss_pred EEEC
Confidence 9976
No 169
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.68 E-value=0.77 Score=51.15 Aligned_cols=73 Identities=14% Similarity=0.290 Sum_probs=54.3
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----C--CcEEEEccCccchHHHHHhCCCCcc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----D--SRFSIIHNCFTELDIILKKYNIKKI 314 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~--~r~~~~~~~f~~~~~~l~~~~~~~~ 314 (733)
..++.++|.-.|.|--+..++++. |+.+|+++|.++.|++.|+ +++ + ++++++.++.-. .++ -.++
T Consensus 227 ~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~---~~~---~~~f 299 (378)
T PRK15001 227 NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS---GVE---PFRF 299 (378)
T ss_pred ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc---cCC---CCCE
Confidence 345799999999999999999885 7899999999999999984 442 1 367777665311 111 1368
Q ss_pred cEEEEcC
Q psy2380 315 DGILFDL 321 (733)
Q Consensus 315 dgil~DL 321 (733)
|.|+.|-
T Consensus 300 DlIlsNP 306 (378)
T PRK15001 300 NAVLCNP 306 (378)
T ss_pred EEEEECc
Confidence 8888873
No 170
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=90.64 E-value=1 Score=45.14 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=54.3
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGI 317 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgi 317 (733)
++..++|+-.|.|.=+.+.+.+- . .+++++|+|++|++.++ +++ .+++++++++..+.-+-+... -..+|.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~-~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK-PTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc-CCCceEE
Confidence 57899999999999999999873 3 48999999999999873 442 357888888763321111111 1236777
Q ss_pred EEcCCC
Q psy2380 318 LFDLGI 323 (733)
Q Consensus 318 l~DLGv 323 (733)
++|==+
T Consensus 126 ~~DPPy 131 (189)
T TIGR00095 126 YLDPPF 131 (189)
T ss_pred EECcCC
Confidence 776544
No 171
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=90.47 E-value=0.54 Score=54.01 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=60.1
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccC--CCcEEEEccCccchHHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~--~~r~~~~~~~f~~~~~~l~ 307 (733)
..+++.+.+ .+++.++|.-.|.|.++..+.+.. .+|+|+|.++++++.+++.. .+++++++++..+...-+
T Consensus 27 ~~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~- 99 (475)
T PLN02336 27 PEILSLLPP---YEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNI- 99 (475)
T ss_pred hHHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCC-
Confidence 344555554 567899999999999999999863 58999999999999874332 357888887775321111
Q ss_pred hCCCCcccEEEEcCC
Q psy2380 308 KYNIKKIDGILFDLG 322 (733)
Q Consensus 308 ~~~~~~~dgil~DLG 322 (733)
.-+++|.|+.+..
T Consensus 100 --~~~~fD~I~~~~~ 112 (475)
T PLN02336 100 --SDGSVDLIFSNWL 112 (475)
T ss_pred --CCCCEEEEehhhh
Confidence 1246898888764
No 172
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.42 E-value=17 Score=39.91 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=42.9
Q ss_pred ChhHHHHHH--HcCCCcEEEEEeCCHHHHHHhc-c--c---C-----CCcEEEEccCccchHHHHHhCCCCcccEEEEcC
Q psy2380 255 GGHSCKILE--RLGKKGRLIAIDKDTESVSLGN-K--I---T-----DSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 255 Gghs~~il~--~~~~~~~l~~~D~D~~a~~~a~-~--l---~-----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DL 321 (733)
||+-.++=| +.+.-.++.-+|.||+.++.++ . | . +.|++.+++.= .++++.-+ +++|.++.||
T Consensus 298 GGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA---f~wlr~a~-~~fD~vIVDl 373 (508)
T COG4262 298 GGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA---FQWLRTAA-DMFDVVIVDL 373 (508)
T ss_pred CCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH---HHHHHhhc-ccccEEEEeC
Confidence 455444332 4444789999999999999984 2 2 1 57999888742 23454433 4799999998
No 173
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=90.41 E-value=0.51 Score=51.69 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred HhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-ccc
Q psy2380 223 IMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKI 287 (733)
Q Consensus 223 ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l 287 (733)
+++.+|+++.++....+ +++..++|..+|.||+...-... .-.+++|+|+++++++.| +|.
T Consensus 44 wvKs~LI~~~~~~~~~~--~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQN--RPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHCHCCCCT--TTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcc--CCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHH
Confidence 34556666666655431 36789999999999999998765 457999999999999999 354
No 174
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=90.31 E-value=0.47 Score=48.70 Aligned_cols=73 Identities=22% Similarity=0.360 Sum_probs=57.1
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCc-EEEEEeCCHHHHHHhc-c-----cCCCcEEEEccCccchHHHHHhCCCCcc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKG-RLIAIDKDTESVSLGN-K-----ITDSRFSIIHNCFTELDIILKKYNIKKI 314 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~-~l~~~D~D~~a~~~a~-~-----l~~~r~~~~~~~f~~~~~~l~~~~~~~~ 314 (733)
++++.++|+|.|-|--+.+=+++ ++ +|+.++.||..++.|+ + |.+.+++++++.- .+.++..+-+++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~---~e~V~~~~D~sf 206 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA---YEVVKDFDDESF 206 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH---HHHHhcCCcccc
Confidence 67999999999999988888776 34 9999999999999984 2 3345788888753 445666666789
Q ss_pred cEEEEc
Q psy2380 315 DGILFD 320 (733)
Q Consensus 315 dgil~D 320 (733)
|.|+=|
T Consensus 207 DaIiHD 212 (287)
T COG2521 207 DAIIHD 212 (287)
T ss_pred ceEeeC
Confidence 999754
No 175
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=90.26 E-value=1.2 Score=46.42 Aligned_cols=81 Identities=19% Similarity=0.096 Sum_probs=54.4
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHH
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIIL 306 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l 306 (733)
..+.+++.+.. .+++.++|.-.|.|.-+..+.+. ..+++|+|.++++++.++ +.. ...+++++..++.
T Consensus 30 ~a~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~--- 98 (251)
T PRK10258 30 SADALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLP--- 98 (251)
T ss_pred HHHHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCc---
Confidence 34455555654 45688999999999998888753 478999999999999984 432 2344555554432
Q ss_pred HhCCCCcccEEEEcC
Q psy2380 307 KKYNIKKIDGILFDL 321 (733)
Q Consensus 307 ~~~~~~~~dgil~DL 321 (733)
..-+++|.|+.++
T Consensus 99 --~~~~~fD~V~s~~ 111 (251)
T PRK10258 99 --LATATFDLAWSNL 111 (251)
T ss_pred --CCCCcEEEEEECc
Confidence 1113577776543
No 176
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=90.12 E-value=1.2 Score=49.03 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+++..++|...|.|.-+..+++.. +..+++++|.++++++.|+ +...+++++++++..++. ..-+++|.|+.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp-----~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP-----FPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-----CCCCceeEEEE
Confidence 356799999999999999999887 5579999999999999985 433346777776655432 11135777765
No 177
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.85 E-value=0.77 Score=41.62 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=54.8
Q ss_pred cCCChhHHHHHHHcCCCc-EEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 252 FGQGGHSCKILERLGKKG-RLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 252 ~G~Gghs~~il~~~~~~~-~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
+|.|.-+..+++.+.+++ +++.+|.|++..+.+.. ..+.+++++..+.+ .|++.++.+.|.++...+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~---~~~~~i~gd~~~~~-~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE---EGVEVIYGDATDPE-VLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH---TTSEEEES-TTSHH-HHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh---cccccccccchhhh-HHhhcCccccCEEEEccC
Confidence 699999999999987777 89999999999887743 23789999999965 577788899999999877
No 178
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=89.59 E-value=0.81 Score=49.92 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=52.0
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.++..++|.-+|.|..+..+.+ .+++|+|+|.++++++.|+ +.. ..++++++++..++.. . -+++|.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~---~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--E---GRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--c---cCCCCE
Confidence 4567999999999999998875 3579999999999999984 321 2478888887655431 1 135777
Q ss_pred EEE
Q psy2380 317 ILF 319 (733)
Q Consensus 317 il~ 319 (733)
|+.
T Consensus 202 Vi~ 204 (322)
T PLN02396 202 VLS 204 (322)
T ss_pred EEE
Confidence 765
No 179
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=1.4 Score=44.88 Aligned_cols=103 Identities=15% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHhhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEcc
Q psy2380 222 RIMGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHN 297 (733)
Q Consensus 222 ~ll~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~ 297 (733)
.+..|-|.--+++.+.+ +|+..+++.=.|.|-+|--+. ++ -++|+++|++++-.+.|+ +|+ -.++.++++
T Consensus 54 tis~P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla-~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 54 TISAPHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLA-RL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred eecCcHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHH-HH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 45578888888999988 899999999888887775555 54 249999999999999994 564 235887777
Q ss_pred CccchHHHHHhCCCCcccEEEEcCCCCcc------ccCCCCCCc
Q psy2380 298 CFTELDIILKKYNIKKIDGILFDLGISSN------QINNELRGF 335 (733)
Q Consensus 298 ~f~~~~~~l~~~~~~~~dgil~DLGvss~------q~~~~~rGf 335 (733)
.=+. =+.+ ..++|.|++.-++... ||++..|-.
T Consensus 128 DG~~---G~~~--~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 128 DGSK---GWPE--EAPYDRIIVTAAAPEVPEALLDQLKPGGRLV 166 (209)
T ss_pred Cccc---CCCC--CCCcCEEEEeeccCCCCHHHHHhcccCCEEE
Confidence 4322 1111 1479999999998875 888777643
No 180
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=89.54 E-value=0.75 Score=46.79 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=45.2
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-ccc
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKI 287 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l 287 (733)
.|++..+.. .+-..++|.-+|-|.-|+-+.++. |.+.+.|||-++++++.| ++|
T Consensus 20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl 74 (257)
T COG4106 20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL 74 (257)
T ss_pred HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC
Confidence 455555544 556789999999999999999998 889999999999999998 466
No 181
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=89.46 E-value=0.73 Score=48.41 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHhHcCCC--------cEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCC-------------
Q psy2380 641 ITIKDLFHHITRKIGKK--------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS------------- 699 (733)
Q Consensus 641 ~s~~el~~~lk~~l~~~--------~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~------------- 699 (733)
|++.|+.+.+.+.+... .+.+++.+++|+||++|-=...+.+++|.++|||++||=.--
T Consensus 1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~ 80 (249)
T TIGR00486 1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIK 80 (249)
T ss_pred CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCcccCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCH
Confidence 45677777777766532 466776788999999999999999999999999999982221
Q ss_pred hhHHHHHHHCCCeEEEeCCh
Q psy2380 700 ESTVYISRESGVAYFAAGHH 719 (733)
Q Consensus 700 ~h~~~~A~~~g~~li~~gH~ 719 (733)
......+.++|++++.+ |.
T Consensus 81 ~~~~~~li~~~I~vy~~-Ht 99 (249)
T TIGR00486 81 PGRLKILLQNDISLYSA-HT 99 (249)
T ss_pred HHHHHHHHHCCCeEEEe-ec
Confidence 11145677889988876 53
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=89.43 E-value=1.1 Score=47.47 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=63.2
Q ss_pred hhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-CCcEEEEccCccc
Q psy2380 224 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-DSRFSIIHNCFTE 301 (733)
Q Consensus 224 l~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-~~r~~~~~~~f~~ 301 (733)
..+.+.+.+++.+.. .++..++|.=-|.|--|.+|++.. .+|+++|.|++..+.-+ ++. .+|++++++.|-+
T Consensus 14 ~~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 14 VDPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp EHHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CCHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 346677888888887 788999999999999999999985 68999999999988864 454 6899999999887
Q ss_pred hHHH
Q psy2380 302 LDII 305 (733)
Q Consensus 302 ~~~~ 305 (733)
++.+
T Consensus 88 ~~~~ 91 (262)
T PF00398_consen 88 WDLY 91 (262)
T ss_dssp SCGG
T ss_pred cccH
Confidence 6543
No 183
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=89.38 E-value=1.7 Score=44.70 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=35.9
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG 284 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a 284 (733)
.+++.++|--.|.|-++..++++ +..|+|+|..+.|++.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~ 75 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQF 75 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHH
Confidence 45789999999999999999875 56899999999999986
No 184
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=89.32 E-value=1 Score=49.01 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=59.8
Q ss_pred HHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh---ccc-C-CCcEEEEccCccchHHHH
Q psy2380 232 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG---NKI-T-DSRFSIIHNCFTELDIIL 306 (733)
Q Consensus 232 vl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a---~~l-~-~~r~~~~~~~f~~~~~~l 306 (733)
++..+.+ .+++.++|..+|.|.|+..++.. ++ .+|+|+|.++..+..+ ++. . ..++.+.+.++.++..
T Consensus 113 ~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-- 185 (314)
T TIGR00452 113 VLPHLSP---LKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-- 185 (314)
T ss_pred HHHhcCC---CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--
Confidence 4455544 56789999999999999999876 34 4899999999888754 232 2 4578888777666532
Q ss_pred HhCCCCcccEEEEcCCCCccccCCCC
Q psy2380 307 KKYNIKKIDGILFDLGISSNQINNEL 332 (733)
Q Consensus 307 ~~~~~~~~dgil~DLGvss~q~~~~~ 332 (733)
..++|.|+.- |+- +|+.++.
T Consensus 186 ----~~~FD~V~s~-gvL-~H~~dp~ 205 (314)
T TIGR00452 186 ----LYAFDTVFSM-GVL-YHRKSPL 205 (314)
T ss_pred ----CCCcCEEEEc-chh-hccCCHH
Confidence 1368887753 432 3444443
No 185
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=89.27 E-value=1.5 Score=44.67 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=51.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.++..++|.-.|.|.-+..+++. ..+++|+|.++++++.|+ +.. .+++.+..+++... .+.+|.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ 130 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--------LGRFDT 130 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--------cCCcCE
Confidence 35678999999999999999875 356999999999999994 442 24788888774321 135888
Q ss_pred EEEc
Q psy2380 317 ILFD 320 (733)
Q Consensus 317 il~D 320 (733)
|+..
T Consensus 131 v~~~ 134 (230)
T PRK07580 131 VVCL 134 (230)
T ss_pred EEEc
Confidence 7764
No 186
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=89.17 E-value=1.3 Score=45.36 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=35.8
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG 284 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a 284 (733)
.+++.++|.-+|.|-++..+.++ +-.|+|+|..+.|++.+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHH
Confidence 35789999999999999999875 56899999999999985
No 187
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=89.09 E-value=1.1 Score=49.06 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=55.9
Q ss_pred HhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh---ccc-C-CCcEEEEccCccchHHHHH
Q psy2380 233 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG---NKI-T-DSRFSIIHNCFTELDIILK 307 (733)
Q Consensus 233 l~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a---~~l-~-~~r~~~~~~~f~~~~~~l~ 307 (733)
...+.+ .+++.++|.-+|.|.|+..+++. ++ .+|+|+|.++..+..+ ++. . +.++.++..++.++..
T Consensus 115 ~~~l~~---l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--- 186 (322)
T PRK15068 115 LPHLSP---LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--- 186 (322)
T ss_pred HHhhCC---CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---
Confidence 344544 45789999999999999999987 34 4699999999887653 222 2 4579999888876642
Q ss_pred hCCCCcccEEEE
Q psy2380 308 KYNIKKIDGILF 319 (733)
Q Consensus 308 ~~~~~~~dgil~ 319 (733)
-+++|.|+.
T Consensus 187 ---~~~FD~V~s 195 (322)
T PRK15068 187 ---LKAFDTVFS 195 (322)
T ss_pred ---cCCcCEEEE
Confidence 146898874
No 188
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.00 E-value=1.3 Score=44.17 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=50.1
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
-++..++|+-.|.|==+.+-+ .+++ .+|+|+|+||+|++.++ +.+ ..++.++.++-+++. .++|-++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~-~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~--------~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAA-LLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR--------GKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHH-hcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC--------CccceEE
Confidence 356789999999996665554 3444 69999999999999983 322 467888888766543 2577777
Q ss_pred Ec
Q psy2380 319 FD 320 (733)
Q Consensus 319 ~D 320 (733)
.|
T Consensus 114 mN 115 (198)
T COG2263 114 MN 115 (198)
T ss_pred EC
Confidence 76
No 189
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=88.88 E-value=17 Score=42.67 Aligned_cols=72 Identities=11% Similarity=-0.009 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC
Q psy2380 43 RRILKKMGPSVFSVFAAQISLMLNTNIASQ--M-REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIEN 114 (733)
Q Consensus 43 k~ll~l~iPiil~~~v~qi~~~iD~~ias~--l-~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~ 114 (733)
++++.+....+.-+..-|+-+--|+.+.+. + +..+-|.|..++.+=.+..-++=.++=.+..-.+|+..+++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~ 327 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRD 327 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhccc
Confidence 688888888888888999999999988776 4 44556666655555555444444666677777777776544
No 190
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=88.76 E-value=1.8 Score=47.82 Aligned_cols=68 Identities=21% Similarity=0.236 Sum_probs=50.8
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccch
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTEL 302 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~ 302 (733)
|++.+.+.+.. .+ +.++|.-.|.|.-|.++.+.. .+|+|+|.+++|++.|+ ++. -+++++++++..++
T Consensus 186 l~~~v~~~~~~---~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 186 MLEWACEVTQG---SK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHhhc---CC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 34455555543 23 469999999999999888775 38999999999999984 443 24688988887553
No 191
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=88.58 E-value=1.5 Score=47.63 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=41.1
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
.+.+++.+......++..++|.-.|.|.-+..++++ +.+|+|+|..+++++.|+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~ 183 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAE 183 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHH
Confidence 344555554300025679999999999999999975 468999999999999984
No 192
>KOG2904|consensus
Probab=88.42 E-value=1.5 Score=46.23 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=88.1
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh----cccC-CCcEEEEccCccchHHHHHh-CCCCcccEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG----NKIT-DSRFSIIHNCFTELDIILKK-YNIKKIDGI 317 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a----~~l~-~~r~~~~~~~f~~~~~~l~~-~~~~~~dgi 317 (733)
+...+|...|.|-=|..+|..+ +.++++|+|+.+.|++.| +|+. .+|+..+|-.++. +.+.+. +-.++.|++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~-d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES-DASDEHPLLEGKIDLL 226 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc-ccccccccccCceeEE
Confidence 4589999999999999999999 489999999999999987 3443 6788888654332 222221 122578887
Q ss_pred EEcCCCCcc----ccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHH------HHHHHcCCCchHHHHHHHH
Q psy2380 318 LFDLGISSN----QINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIK------KVIQDYGEERFAKKIAKEI 387 (733)
Q Consensus 318 l~DLGvss~----q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~------~i~~~ygee~~~~~ia~~i 387 (733)
+=|==|=.. |++-+=| +|...--|| .|..-.|.+-++..-.=. .++.+|+|++....+.+.+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~--~yEp~lALd------Gg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVR--LYEPKLALD------GGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred ecCCCcccccchhhcCchhe--ecCchhhhc------cccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence 655433221 2221111 111111111 234444444444322111 1233566777777777777
Q ss_pred HHHhccCCCCCHHHHHHHHHhhc
Q psy2380 388 VHYRSITPITRTKQLVEIILKSI 410 (733)
Q Consensus 388 ~~~r~~~~~~tt~~l~~~i~~~~ 410 (733)
...+. ..+.-.+.++.+..
T Consensus 299 m~s~~----~d~~~~~~v~~Df~ 317 (328)
T KOG2904|consen 299 MISLK----DDSNGKAAVVSDFA 317 (328)
T ss_pred HHhch----hhccchhheeeccc
Confidence 77763 33344444444443
No 193
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=88.39 E-value=1.3 Score=45.13 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=44.8
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccc
Q psy2380 246 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTE 301 (733)
Q Consensus 246 ~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~ 301 (733)
.++|.-.|.|+.+..++++. ++++++|+|.+++.++.++ ++. .+++++++.++.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 47999999999999999987 6689999999999999984 442 4577777766543
No 194
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=88.36 E-value=2.1 Score=44.34 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=56.6
Q ss_pred HHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccC-CCcEE-EEccCccchHHHH
Q psy2380 229 LNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-DSRFS-IIHNCFTELDIIL 306 (733)
Q Consensus 229 l~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~-~~r~~-~~~~~f~~~~~~l 306 (733)
+.++++.+.. ..++.+++|...|.|+.|..++++ + -.+|+|+|..++.+... +. +.|+. +-..|+.++. .
T Consensus 63 L~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~--l~~~~~v~~~~~~ni~~~~--~ 134 (228)
T TIGR00478 63 LKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEK--LRQDERVKVLERTNIRYVT--P 134 (228)
T ss_pred HHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHH--HhcCCCeeEeecCCcccCC--H
Confidence 4566666654 135779999999999999999986 3 46899999999877652 32 45654 4555666432 1
Q ss_pred HhCCCCcccEEEEcCCCCcc
Q psy2380 307 KKYNIKKIDGILFDLGISSN 326 (733)
Q Consensus 307 ~~~~~~~~dgil~DLGvss~ 326 (733)
++. ..|.+.+|+=+.|.
T Consensus 135 ~~~---~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 135 ADI---FPDFATFDVSFISL 151 (228)
T ss_pred hHc---CCCceeeeEEEeeh
Confidence 111 13555666554443
No 195
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.19 E-value=1.5 Score=46.93 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=35.1
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
+++.++|.=.|.|..+..++++ +.+|+|+|.++++++.++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~ 159 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQ 159 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHH
Confidence 3468999999999999999874 479999999999999874
No 196
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=87.86 E-value=1.8 Score=45.30 Aligned_cols=74 Identities=28% Similarity=0.342 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-c-------CCCcEEEEccCccchHHHHHhCCCCcc
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-I-------TDSRFSIIHNCFTELDIILKKYNIKKI 314 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l-------~~~r~~~~~~~f~~~~~~l~~~~~~~~ 314 (733)
|..+.|= =.|.||-.+++++. ++..++..+|+||++++.|++ + .++|++++.+.- ..++++..-.++
T Consensus 77 p~~VLii-GgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg---~~~l~~~~~~~y 151 (246)
T PF01564_consen 77 PKRVLII-GGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG---RKFLKETQEEKY 151 (246)
T ss_dssp T-EEEEE-ESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH---HHHHHTSSST-E
T ss_pred cCceEEE-cCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh---HHHHHhccCCcc
Confidence 3344443 38999999999976 456799999999999999964 2 147999987643 345665432279
Q ss_pred cEEEEcC
Q psy2380 315 DGILFDL 321 (733)
Q Consensus 315 dgil~DL 321 (733)
|.|+.|+
T Consensus 152 DvIi~D~ 158 (246)
T PF01564_consen 152 DVIIVDL 158 (246)
T ss_dssp EEEEEES
T ss_pred cEEEEeC
Confidence 9999998
No 197
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=87.84 E-value=0.47 Score=42.42 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred CChhHHHHHHHcCCCc--EEEEEeCCHH---HHHHhcccC-CCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 254 QGGHSCKILERLGKKG--RLIAIDKDTE---SVSLGNKIT-DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 254 ~Gghs~~il~~~~~~~--~l~~~D~D~~---a~~~a~~l~-~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
.|.=|..|++.+.+++ +++++|.++. +-+..++.. .++++++++++.+.-.-+. ..++|.+.+|-+
T Consensus 7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iDg~ 78 (106)
T PF13578_consen 7 SGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEES-
T ss_pred cccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEECCC
Confidence 6777778888876665 8999999994 444333322 5689999999977544444 247999999975
No 198
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.81 E-value=2.9 Score=44.34 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-------CCcEEEEccCccchHHHHHhCCCCccc
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-------DSRFSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-------~~r~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
.+.++|.-.|.|+=+..+++.. +..++.++|+|+++++.++ .+. ++|++++.+. ..+++++.. +++|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D---~~~~l~~~~-~~yD 147 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD---GFKFLADTE-NTFD 147 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc---hHHHHHhCC-CCcc
Confidence 3488999999999999999874 5678999999999999984 331 3578887743 334454432 4799
Q ss_pred EEEEcC
Q psy2380 316 GILFDL 321 (733)
Q Consensus 316 gil~DL 321 (733)
.|+.|.
T Consensus 148 vIi~D~ 153 (270)
T TIGR00417 148 VIIVDS 153 (270)
T ss_pred EEEEeC
Confidence 999884
No 199
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=87.03 E-value=1.3 Score=48.63 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=77.1
Q ss_pred hhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cc--cC--CCcEEEEccC
Q psy2380 224 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NK--IT--DSRFSIIHNC 298 (733)
Q Consensus 224 l~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~--l~--~~r~~~~~~~ 298 (733)
+-|-+..|=.+.... ..+|.+++|+=.|-|.-|..++.+- ..+|+|+|++|+|++.. ++ |. +++++.+++.
T Consensus 171 Fsprl~~ER~Rva~~--v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD 246 (341)
T COG2520 171 FSPRLSTERARVAEL--VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD 246 (341)
T ss_pred ECCCchHHHHHHHhh--hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEecc
Confidence 456677777776654 2568899999999999999999874 33499999999999997 44 43 5678899887
Q ss_pred ccchHHHHHhCCCCcccEEEEcCCCCccccCCCC
Q psy2380 299 FTELDIILKKYNIKKIDGILFDLGISSNQINNEL 332 (733)
Q Consensus 299 f~~~~~~l~~~~~~~~dgil~DLGvss~q~~~~~ 332 (733)
-.++...+ ..+|-|++.+=.|++|+.+.-
T Consensus 247 ~rev~~~~-----~~aDrIim~~p~~a~~fl~~A 275 (341)
T COG2520 247 AREVAPEL-----GVADRIIMGLPKSAHEFLPLA 275 (341)
T ss_pred HHHhhhcc-----ccCCEEEeCCCCcchhhHHHH
Confidence 66653322 468999999999988887543
No 200
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=86.87 E-value=0.23 Score=43.75 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=40.9
Q ss_pred EEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 248 IDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 248 vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
+|.=.|.|.-+..|++++ +..+++|+|.++.+++.+ +|+. ..+...++-...+..+ ....+++|.|+.-
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD---YDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS------CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh---cccccccceehhh
Confidence 477789999999999998 889999999999999888 4664 2233333333322211 1111478988865
No 201
>PRK10799 metal-binding protein; Provisional
Probab=86.46 E-value=3 Score=43.77 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhHcCCC--------cEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEcc-------------CCh
Q psy2380 642 TIKDLFHHITRKIGKK--------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGE-------------ISE 700 (733)
Q Consensus 642 s~~el~~~lk~~l~~~--------~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd-------------~~~ 700 (733)
++.|+.+.+.+.+... .+++++ .+.|+||++|-=...+.+++|.++|||++||=. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~wd~~Gl~v~~-~~~v~~I~~alD~t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~ 80 (247)
T PRK10799 2 KNTELEQLINEKLNSAAISDYAPNGLQVEG-RETVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKR 80 (247)
T ss_pred cHHHHHHHHHhhcCHhhhccCCCceeEeCC-cccccEEEEEeCCCHHHHHHHHHCCCCEEEECCchhccCCCccccchHH
Confidence 4567777776666542 345543 368999999999999999999999999999843 112
Q ss_pred hHHHHHHHCCCeEEEeCChh
Q psy2380 701 STVYISRESGVAYFAAGHHA 720 (733)
Q Consensus 701 h~~~~A~~~g~~li~~gH~~ 720 (733)
.....+.+++++++.. |.+
T Consensus 81 ~~~~~li~~~i~vy~~-Htn 99 (247)
T PRK10799 81 NRLKTLLANDINLYGW-HLP 99 (247)
T ss_pred HHHHHHHHCCCeEEEE-ecc
Confidence 2456678899998876 543
No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=85.20 E-value=2.8 Score=45.73 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=65.8
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCC---CcEEEEEeCCHHHHHHh-cccC-C--C--cEEEEccCccchHHHHHhCCC-C
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGK---KGRLIAIDKDTESVSLG-NKIT-D--S--RFSIIHNCFTELDIILKKYNI-K 312 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~---~~~l~~~D~D~~a~~~a-~~l~-~--~--r~~~~~~~f~~~~~~l~~~~~-~ 312 (733)
++..+||.=.|.|-+++-+|+.+.+ ..+.+++|++.++++.+ ++|. . + .+..+++.|.+.-.+++.... .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4668999999999999999998853 36799999999999998 5665 2 2 345599999887776643111 1
Q ss_pred cccEEEEcCCCCccccCCCC
Q psy2380 313 KIDGILFDLGISSNQINNEL 332 (733)
Q Consensus 313 ~~dgil~DLGvss~q~~~~~ 332 (733)
... +++=||-|-.-++.++
T Consensus 156 ~~r-~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 156 RPT-TILWLGSSIGNFSRPE 174 (319)
T ss_pred Ccc-EEEEeCccccCCCHHH
Confidence 233 5666898877776555
No 203
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=85.11 E-value=1.8 Score=45.26 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=45.6
Q ss_pred cEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCC--------------hhHHHHHHHCCCeEEEeCChh
Q psy2380 658 PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEIS--------------ESTVYISRESGVAYFAAGHHA 720 (733)
Q Consensus 658 ~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~--------------~h~~~~A~~~g~~li~~gH~~ 720 (733)
.+.+|+.++.|+||++|-=...+.+++|.++|||++||=.-- +.-...+.++|++++.+ |.+
T Consensus 22 Gl~vg~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~-Ht~ 97 (241)
T PF01784_consen 22 GLQVGDPEQEVKKVLVALDATPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSA-HTN 97 (241)
T ss_dssp EEEES-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEE-SHH
T ss_pred ceEECcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEe-ccc
Confidence 467787788999999999999999999999999999994331 11245677899999887 654
No 204
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=85.04 E-value=2.3 Score=45.37 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=53.7
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccch
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTEL 302 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~ 302 (733)
+.+.+.+.- +||..++|.=+|.||=+....+++ +.+|+|++.+++..+.++ |+. ++++++....+.++
T Consensus 62 ~~~~~kl~L---~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 62 DLILEKLGL---KPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHhcCC---CCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 445566665 899999999999999999999997 789999999999999984 442 34666655555444
No 205
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=84.94 E-value=2.9 Score=42.89 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=53.1
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
.++..++|.-.|.|..+..+++. ..+++++|.++++++.++ +.. ..++.+++.++.++. +..+ +++|.|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA---AEHP-GQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh---hhcC-CCccEEE
Confidence 46778999999999999888765 368999999999999884 432 335677776665543 2211 4789888
Q ss_pred EcC
Q psy2380 319 FDL 321 (733)
Q Consensus 319 ~DL 321 (733)
...
T Consensus 120 ~~~ 122 (233)
T PRK05134 120 CME 122 (233)
T ss_pred Ehh
Confidence 743
No 206
>KOG3420|consensus
Probab=84.74 E-value=0.68 Score=44.15 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+|+...|...|.|==| +.-.......++|||+||+|++.+ ++.+ +=+..+++.....+. .....+|..+.
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-----~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-----LKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-----ccCCeEeeEEe
Confidence 5788999999999777 333455678999999999999998 3432 223455555543321 11134565555
Q ss_pred cCCCCccccCCCCCCcccCCCCCccccCC
Q psy2380 320 DLGISSNQINNELRGFSFLLDGPLDMRMD 348 (733)
Q Consensus 320 DLGvss~q~~~~~rGfs~~~~~pLDmRm~ 348 (733)
| |. |-=++.+ -|||+=
T Consensus 121 N----------pp--FGTk~~~-aDm~fv 136 (185)
T KOG3420|consen 121 N----------PP--FGTKKKG-ADMEFV 136 (185)
T ss_pred c----------CC--CCccccc-ccHHHH
Confidence 4 22 3334455 889873
No 207
>PRK00536 speE spermidine synthase; Provisional
Probab=84.47 E-value=2.2 Score=45.11 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=49.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-c-------CCCcEEEEccCccchHHHHHhCCCCc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-I-------TDSRFSIIHNCFTELDIILKKYNIKK 313 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l-------~~~r~~~~~~~f~~~~~~l~~~~~~~ 313 (733)
+|..+.| .=-|.||=.+++|++ +. +|.-+|+|++.++.+++ | .++|++++. .+.+..-++
T Consensus 72 ~pk~VLI-iGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--------~~~~~~~~~ 139 (262)
T PRK00536 72 ELKEVLI-VDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--------QLLDLDIKK 139 (262)
T ss_pred CCCeEEE-EcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--------hhhhccCCc
Confidence 4444444 445888999999987 33 99999999999999965 4 268999985 122322257
Q ss_pred ccEEEEcC
Q psy2380 314 IDGILFDL 321 (733)
Q Consensus 314 ~dgil~DL 321 (733)
+|.|+.|.
T Consensus 140 fDVIIvDs 147 (262)
T PRK00536 140 YDLIICLQ 147 (262)
T ss_pred CCEEEEcC
Confidence 99999993
No 208
>PRK04148 hypothetical protein; Provisional
Probab=84.31 E-value=3.1 Score=39.49 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=34.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK 286 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~ 286 (733)
.++..++|.=+|.|.+-...|.+. +..|+|+|+++++++.+++
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 345789999999998666666664 5689999999999998853
No 209
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=84.23 E-value=1.7 Score=46.76 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=49.2
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCCCcEEE-EccCccchHHHHHhCCCCcccEEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITDSRFSI-IHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~-~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+++..++|.=.|.|==|-+.++. +. .+++|+|.||.|++.|+ +...|.+.. .+....+....... .++|.|+.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~---~~~DvIVA 235 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPEN---GPFDVIVA 235 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhccc---CcccEEEe
Confidence 35789999999999888777754 33 68999999999999983 433233432 22222222222221 47888888
Q ss_pred cC
Q psy2380 320 DL 321 (733)
Q Consensus 320 DL 321 (733)
|+
T Consensus 236 NI 237 (300)
T COG2264 236 NI 237 (300)
T ss_pred hh
Confidence 76
No 210
>KOG2864|consensus
Probab=83.95 E-value=62 Score=36.86 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHH
Q psy2380 44 RILKKMGPSVFSVFAAQISLMLNTNIASQM---REGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEYS 120 (733)
Q Consensus 44 ~ll~l~iPiil~~~v~qi~~~iD~~ias~l---~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~~ 120 (733)
+++++..-.+.-+..-|+-+-=|+.+.++. +-++-|.|...+++=.+..-++-.++--...--+|+....++.+..+
T Consensus 240 d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k 319 (530)
T KOG2864|consen 240 DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVK 319 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHH
Confidence 444444445544556677777777766543 33455556555444444444445677777777888888777776655
Q ss_pred HHhh---h------------------------------------------------------------------------
Q psy2380 121 AILD---W------------------------------------------------------------------------ 125 (733)
Q Consensus 121 ~~l~---~------------------------------------------------------------------------ 125 (733)
+..+ +
T Consensus 320 ~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~ 399 (530)
T KOG2864|consen 320 KAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDK 399 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHh
Confidence 5543 1
Q ss_pred -------------------cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy2380 126 -------------------IPIFAHSGLALSIGLGACLHASFLYWYLRHKRIYI 160 (733)
Q Consensus 126 -------------------ip~~Gi~GaalAt~is~~v~~iL~~~~l~r~i~~~ 160 (733)
+.++|..|..+|+.+...+-.+...+++++..+-.
T Consensus 400 ~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 400 HNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred cccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23689999999999999888888889998887654
No 211
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=83.57 E-value=2.8 Score=46.93 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+..++|+-.|.|.=+..++...+ ..+|+++|.|++|++.++ +++ -++.++++++..+ ++.+ -+.+|.|.+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~---~l~~--~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA---LLHE--ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH---HHhh--cCCCCEEEE
Confidence 45899999999999999988763 458999999999999984 443 1345566665533 3332 135788888
Q ss_pred c
Q psy2380 320 D 320 (733)
Q Consensus 320 D 320 (733)
|
T Consensus 132 D 132 (382)
T PRK04338 132 D 132 (382)
T ss_pred C
Confidence 7
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=83.36 E-value=2.6 Score=50.94 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC----C-CcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT----D-SRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~----~-~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
+++.++|+-.|.|+=|...++. ...+|+++|.++.|++.|+ +++ + +++++++++..+ ++++.+ .++|.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~---~l~~~~-~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA---WLKEAR-EQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH---HHHHcC-CCcCE
Confidence 4789999999999999999975 2347999999999999994 442 2 589999887533 343332 47999
Q ss_pred EEEc
Q psy2380 317 ILFD 320 (733)
Q Consensus 317 il~D 320 (733)
|++|
T Consensus 612 IilD 615 (702)
T PRK11783 612 IFID 615 (702)
T ss_pred EEEC
Confidence 9999
No 213
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=83.15 E-value=3.3 Score=42.92 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=58.7
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC--C-CcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT--D-SRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~--~-~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
.++|+.-||.|.|..+++++- |+.-.+|+|+-...+..+ ++.. + +++.+++.+=.++-..+... +++|+|.+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~--~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPD--GSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCC--CCeeEEEEE
Confidence 599999999999999999995 888999999999999988 4442 3 37888888766655544432 279999887
Q ss_pred C
Q psy2380 321 L 321 (733)
Q Consensus 321 L 321 (733)
+
T Consensus 127 F 127 (227)
T COG0220 127 F 127 (227)
T ss_pred C
Confidence 5
No 214
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=83.02 E-value=2.2 Score=45.98 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=52.1
Q ss_pred cCCCEEEEEccCCChhHHHHHHHc------CCCcEEEEEeCCHHHHHHhc-cc--C---CCcEEEEccC-ccchHHHHHh
Q psy2380 242 RINGIYIDATFGQGGHSCKILERL------GKKGRLIAIDKDTESVSLGN-KI--T---DSRFSIIHNC-FTELDIILKK 308 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~------~~~~~l~~~D~D~~a~~~a~-~l--~---~~r~~~~~~~-f~~~~~~l~~ 308 (733)
+++..++|-++|.||=-.+..+.+ .+...++|+|.|+.+...|+ ++ . .+...+.+++ |.+ +...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~-~~~~-- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN-DKFI-- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS-HSCT--
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc-cccc--
Confidence 667789999999999888887743 35789999999999999984 44 2 2334455554 332 1111
Q ss_pred CCCCcccEEEEcCCCCcccc
Q psy2380 309 YNIKKIDGILFDLGISSNQI 328 (733)
Q Consensus 309 ~~~~~~dgil~DLGvss~q~ 328 (733)
...++|.|+.|-=+++.+.
T Consensus 122 -~~~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 122 -KNQKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp -ST--EEEEEEE--CTCES-
T ss_pred -cccccccccCCCCcccccc
Confidence 1257999999877777654
No 215
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=82.84 E-value=0.82 Score=47.51 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=14.2
Q ss_pred HHcCCCchHHHHHHHHHHHhccCCC----CCHHHHHHHHHhhcC
Q psy2380 372 QDYGEERFAKKIAKEIVHYRSITPI----TRTKQLVEIILKSIR 411 (733)
Q Consensus 372 ~~ygee~~~~~ia~~i~~~r~~~~~----~tt~~l~~~i~~~~~ 411 (733)
-.+|..+.+|+-+..+...++...+ .-|.++...+.+..+
T Consensus 27 ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~ 70 (233)
T PF01209_consen 27 LSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG 70 (233)
T ss_dssp ----------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS
T ss_pred cCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC
Confidence 3568777777755555555432222 235677776666554
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=80.77 E-value=3.2 Score=48.27 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=58.5
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
.+.+.+|.-+|.|+|..+++++. |+.-++|+|+....+..+ ++.. -+++.+++.+...+...+.. .++|.|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~---~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPN---NSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCc---ccccEEE
Confidence 46799999999999999999995 888999999999988887 3332 25788888766555555443 4688888
Q ss_pred EcC
Q psy2380 319 FDL 321 (733)
Q Consensus 319 ~DL 321 (733)
+.+
T Consensus 423 i~F 425 (506)
T PRK01544 423 ILF 425 (506)
T ss_pred EEC
Confidence 775
No 217
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=80.72 E-value=3 Score=39.09 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=42.9
Q ss_pred EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccc
Q psy2380 246 IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTE 301 (733)
Q Consensus 246 ~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~ 301 (733)
+++|+-.|.|-+|..+++.. +++++++||-||+..+.++ +++ -+++++++...++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 47999999999999998874 7789999999999999874 332 1357777765544
No 218
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=80.62 E-value=4.8 Score=43.90 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=50.4
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-----CCcEEEEcc-CccchHHHHHhCCCCccc
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-----DSRFSIIHN-CFTELDIILKKYNIKKID 315 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-----~~r~~~~~~-~f~~~~~~l~~~~~~~~d 315 (733)
++..++|.-.|.|+=...+..+. ++.+++|+|+|++|++.|+ ..+ .+|+++.+. +-.++..-+.. .-+.+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~-~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH-KNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc-cCCceE
Confidence 45789999999988777777765 5789999999999999994 332 357777542 22222221110 113567
Q ss_pred EEEEcC
Q psy2380 316 GILFDL 321 (733)
Q Consensus 316 gil~DL 321 (733)
.|+.|=
T Consensus 192 livcNP 197 (321)
T PRK11727 192 ATLCNP 197 (321)
T ss_pred EEEeCC
Confidence 666653
No 219
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=80.36 E-value=6.2 Score=39.53 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=62.1
Q ss_pred HHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-ccc---C-CCcEEEEccCccchHHHH
Q psy2380 232 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKI---T-DSRFSIIHNCFTELDIIL 306 (733)
Q Consensus 232 vl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l---~-~~r~~~~~~~f~~~~~~l 306 (733)
+.+++.+. .-+|..++|+=.|.|.=..+=|.+- -.+++.+|+|.+|.... +++ . ..+.++++.+=. .+|
T Consensus 33 lFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~---~~L 106 (187)
T COG0742 33 LFNILAPD-EIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL---RAL 106 (187)
T ss_pred HHHhcccc-ccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH---HHH
Confidence 44556540 0368899999999999998888773 46899999999999987 343 2 367777665433 566
Q ss_pred HhCCCC-cccEEEEcCCCC
Q psy2380 307 KKYNIK-KIDGILFDLGIS 324 (733)
Q Consensus 307 ~~~~~~-~~dgil~DLGvs 324 (733)
+..+-. .+|.|.+|==|-
T Consensus 107 ~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HhcCCCCcccEEEeCCCCc
Confidence 666543 499999985443
No 220
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=79.84 E-value=1.3e+02 Score=35.17 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCHH
Q psy2380 40 IAVRRILKKMGPSVFSVFAAQISLMLNTNIASQMREG-SLSCLSYADRLMEFPTTLLG-VTFNTILLPNLSKARIENNTE 117 (733)
Q Consensus 40 ~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~l~~g-~v~~l~~A~~L~~lP~~i~~-~ai~tvllP~lS~~~a~~d~~ 117 (733)
+.+|..+..+.-.++|.... ..=|..++..++.+ ...++++|.++-++---+++ .+++++.+|-+++...++.++
T Consensus 8 sllks~~~vs~~Tl~SRi~G---~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~ 84 (518)
T COG0728 8 SLLKSLIIVSSATLLSRILG---FVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEE 84 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhh
Confidence 45666666666666554433 33355667777665 56889999999999887774 557999999999999888666
Q ss_pred H
Q psy2380 118 E 118 (733)
Q Consensus 118 ~ 118 (733)
+
T Consensus 85 ~ 85 (518)
T COG0728 85 A 85 (518)
T ss_pred H
Confidence 6
No 221
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=79.10 E-value=5.2 Score=41.41 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=46.0
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCcc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFT 300 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~ 300 (733)
.+...+||.=-|.|..+.+++++. |+.+++.+|. |++++.+++ .+|++++-++|-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--~~rv~~~~gd~f 153 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE--ADRVEFVPGDFF 153 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--TTTEEEEES-TT
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--ccccccccccHH
Confidence 345789999999999999999997 8899999999 899988865 689999999984
No 222
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=79.05 E-value=6 Score=42.35 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=55.5
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-------CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-------DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-------~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
..++=.=.|.||=++++|+.. +-.+++.+|+|++.++.|+ .|. ++|++++-+ +-.+++++.. .++|.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~---Dg~~~v~~~~-~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID---DGVEFLRDCE-EKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec---cHHHHHHhCC-CcCCE
Confidence 466667789999999999886 5689999999999999995 442 478887654 3445566543 27999
Q ss_pred EEEcC
Q psy2380 317 ILFDL 321 (733)
Q Consensus 317 il~DL 321 (733)
|+.|.
T Consensus 153 Ii~D~ 157 (282)
T COG0421 153 IIVDS 157 (282)
T ss_pred EEEcC
Confidence 99996
No 223
>PLN02823 spermine synthase
Probab=79.01 E-value=7.1 Score=42.90 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=53.6
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC-------CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT-------DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~-------~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
..++-.=.|.|+-.+.+|+.. +..++..+|+|++.++.|+ .+. ++|++++.+.-. ++++... +++|.
T Consensus 105 k~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~---~~L~~~~-~~yDv 179 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR---AELEKRD-EKFDV 179 (336)
T ss_pred CEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH---HHHhhCC-CCccE
Confidence 345666678888889999863 5579999999999999995 342 478988876543 3454432 57999
Q ss_pred EEEcC
Q psy2380 317 ILFDL 321 (733)
Q Consensus 317 il~DL 321 (733)
|+.|+
T Consensus 180 Ii~D~ 184 (336)
T PLN02823 180 IIGDL 184 (336)
T ss_pred EEecC
Confidence 99997
No 224
>KOG0820|consensus
Probab=78.64 E-value=8.7 Score=40.65 Aligned_cols=85 Identities=18% Similarity=0.411 Sum_probs=64.8
Q ss_pred hhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCc
Q psy2380 225 GFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCF 299 (733)
Q Consensus 225 ~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f 299 (733)
.|-..+.+++.-.. +|.++++.+-=|.|.=|.++||+ ..+|+|++.||-.++.- +|.. +++++++++.|
T Consensus 43 Np~v~~~I~~ka~~---k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~ 116 (315)
T KOG0820|consen 43 NPLVIDQIVEKADL---KPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF 116 (315)
T ss_pred CHHHHHHHHhccCC---CCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc
Confidence 34444555555444 88999999999999999999998 36899999999999885 4543 47899999988
Q ss_pred cchHHHHHhCCCCcccEEEEcCC
Q psy2380 300 TELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 300 ~~~~~~l~~~~~~~~dgil~DLG 322 (733)
-..+ .+.+|+++-||=
T Consensus 117 lK~d-------~P~fd~cVsNlP 132 (315)
T KOG0820|consen 117 LKTD-------LPRFDGCVSNLP 132 (315)
T ss_pred ccCC-------CcccceeeccCC
Confidence 4432 245788887764
No 225
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=78.35 E-value=7.2 Score=41.17 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=68.1
Q ss_pred hhhhhHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC-CCcEEEEccCccc
Q psy2380 224 MGFLFLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT-DSRFSIIHNCFTE 301 (733)
Q Consensus 224 l~pvll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~-~~r~~~~~~~f~~ 301 (733)
..+..++.+++.... ++++.++..=-|-|.=|+.++++. .+|+|+++|+..++.- +++. .+|++++++.+-.
T Consensus 14 ~d~~v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk 87 (259)
T COG0030 14 IDKNVIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALK 87 (259)
T ss_pred cCHHHHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhc
Confidence 344557788888877 778899999999999999999985 4699999999999986 4553 6799999998765
Q ss_pred hHHHHHhCCCCcccEEEEcCCC
Q psy2380 302 LDIILKKYNIKKIDGILFDLGI 323 (733)
Q Consensus 302 ~~~~l~~~~~~~~dgil~DLGv 323 (733)
++ +.++. ..+-|+-||=|
T Consensus 88 ~d--~~~l~--~~~~vVaNlPY 105 (259)
T COG0030 88 FD--FPSLA--QPYKVVANLPY 105 (259)
T ss_pred Cc--chhhc--CCCEEEEcCCC
Confidence 43 11110 34667777654
No 226
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=77.70 E-value=5.9 Score=42.72 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=45.3
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-cc--C--CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KI--T--DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l--~--~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
.++..++|.-.|.|==|.+-++ ++. .+|+|+|+||.|++.|+ +. . .+++.+. ...+.. + .++|.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~k-lGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~---~----~~~dl 228 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAK-LGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLV---E----GKFDL 228 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHH-TTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTC---C----S-EEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHH-cCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecccc---c----ccCCE
Confidence 4678999999999966655553 333 58999999999999983 33 2 4566552 112211 1 46888
Q ss_pred EEEcCC
Q psy2380 317 ILFDLG 322 (733)
Q Consensus 317 il~DLG 322 (733)
|+.|+-
T Consensus 229 vvANI~ 234 (295)
T PF06325_consen 229 VVANIL 234 (295)
T ss_dssp EEEES-
T ss_pred EEECCC
Confidence 888763
No 227
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=77.46 E-value=2.5 Score=40.31 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHhccccCCeEEEEecc-----chhhhHHHHHHHhcCCC
Q psy2380 439 SIALKIGFKKLNIKGRIVVISFH-----SLEDRIVKNFINFNTKI 478 (733)
Q Consensus 439 ~~~l~~~~~~l~~gg~l~visfh-----SlEdr~vk~~~~~~~~~ 478 (733)
-.+|+++.++|+|||++.|+.|. --|-.-|.+|+++....
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~ 116 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQK 116 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TT
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcc
Confidence 35677888999999999999997 46788899999987543
No 228
>KOG1540|consensus
Probab=76.19 E-value=13 Score=39.10 Aligned_cols=166 Identities=11% Similarity=0.159 Sum_probs=101.4
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCC-----cEEEEEeCCHHHHHHhc-cc-----C-CCcEEEEcc
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKK-----GRLIAIDKDTESVSLGN-KI-----T-DSRFSIIHN 297 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~-----~~l~~~D~D~~a~~~a~-~l-----~-~~r~~~~~~ 297 (733)
+-.+..+.+ .++..++|..-|.|-=+-.||++.... ++|+..|+.|+.++.++ |- . ..|+..+.+
T Consensus 90 d~~v~~L~p---~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 90 DMFVSKLGP---GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHhhhccCC---CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 334567777 667899999999999999999998543 89999999999999873 32 2 346888888
Q ss_pred CccchHHHHHhCCCCcccEEEEcCCCCccccCCCCCCcc----cCCCCC--ccccCCCCCCCCHHHHHhccCHHHHHHHH
Q psy2380 298 CFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFS----FLLDGP--LDMRMDITRGISASKWLANATEFNIKKVI 371 (733)
Q Consensus 298 ~f~~~~~~l~~~~~~~~dgil~DLGvss~q~~~~~rGfs----~~~~~p--LDmRm~~~~~~~a~~~~n~~~~~~l~~i~ 371 (733)
+=++++ ++. .++|....-+|+-. .-+++||.. -.+.|- +=|=++.....+...+-+.|+.+-|-.+=
T Consensus 167 dAE~Lp--Fdd---~s~D~yTiafGIRN--~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG 239 (296)
T KOG1540|consen 167 DAEDLP--FDD---DSFDAYTIAFGIRN--VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLG 239 (296)
T ss_pred CcccCC--CCC---CcceeEEEecceec--CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhh
Confidence 877765 222 46788777777643 233333321 112111 01112223233455666666665555444
Q ss_pred HHcCCCchHHHHHHHHHHHhccCCCCCHHHHHHHHHhhc
Q psy2380 372 QDYGEERFAKKIAKEIVHYRSITPITRTKQLVEIILKSI 410 (733)
Q Consensus 372 ~~ygee~~~~~ia~~i~~~r~~~~~~tt~~l~~~i~~~~ 410 (733)
.-|-..+++.++-..=+ +.+.+-++++..|+++-
T Consensus 240 ~~iagd~~sYqYLveSI-----~rfp~qe~f~~miedaG 273 (296)
T KOG1540|consen 240 EIIAGDRKSYQYLVESI-----RRFPPQEEFASMIEDAG 273 (296)
T ss_pred HhhhhhHhhhhhHHhhh-----hcCCCHHHHHHHHHHcC
Confidence 44444445544432222 23566677887777763
No 229
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=76.12 E-value=6.4 Score=43.92 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=56.6
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC---CCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT---DSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~---~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
-.++|+-.|.|-=+...+...+.-.+|++.|++++|++..+ +++ -+++++++.+..++ +...+ .++|.|.+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~---l~~~~-~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV---LRYRN-RKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH---HHHhC-CCCCEEEeC
Confidence 47999999999999999987533368999999999999983 443 23577888765543 44322 368999998
Q ss_pred CCCCc
Q psy2380 321 LGISS 325 (733)
Q Consensus 321 LGvss 325 (733)
= +-|
T Consensus 122 P-fGs 125 (374)
T TIGR00308 122 P-FGT 125 (374)
T ss_pred C-CCC
Confidence 5 543
No 230
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=75.94 E-value=0.86 Score=37.42 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=29.7
Q ss_pred HhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhc-cCCCCCHHHHHHH
Q psy2380 359 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS-ITPITRTKQLVEI 405 (733)
Q Consensus 359 ~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~-~~~~~tt~~l~~~ 405 (733)
+|+.|.+||..+- -.+.+.|++|++.|+ .++|.+..||.++
T Consensus 8 iN~as~~eL~~lp------gi~~~~A~~Iv~~R~~~G~f~s~~dL~~v 49 (65)
T PF12836_consen 8 INTASAEELQALP------GIGPKQAKAIVEYREKNGPFKSLEDLKEV 49 (65)
T ss_dssp TTTS-HHHHHTST------T--HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred CccCCHHHHHHcC------CCCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence 6899999998762 246789999999996 5799999998764
No 231
>KOG3191|consensus
Probab=75.74 E-value=21 Score=35.69 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc---ccCCCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN---KITDSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~---~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
...++++.-.|.|==|.++.+..+|+....+.|+.|+|.+.++ +..+-++..++.++.. -++. +++|-++|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~---~l~~---~~VDvLvf 116 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS---GLRN---ESVDVLVF 116 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh---hhcc---CCccEEEE
Confidence 3579999999999999999999999999999999999999873 3334456677765432 3433 68999999
Q ss_pred cCCC
Q psy2380 320 DLGI 323 (733)
Q Consensus 320 DLGv 323 (733)
|=+|
T Consensus 117 NPPY 120 (209)
T KOG3191|consen 117 NPPY 120 (209)
T ss_pred CCCc
Confidence 8665
No 232
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=74.85 E-value=11 Score=38.93 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=35.7
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG 284 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a 284 (733)
.+++.+++-=+|.|-+...++++ +-+|+|+|..+.|++.+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~ 81 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSF 81 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHH
Confidence 45679999999999999999976 45799999999999997
No 233
>KOG1540|consensus
Probab=74.80 E-value=3.5 Score=43.16 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHhcCCC
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNTKI 478 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~~~~~ 478 (733)
..+++|+.|..+||||||+.++-|--.|...+++|...+...
T Consensus 192 h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 192 HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 457889999999999999999999999999999999988664
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=73.79 E-value=5.4 Score=42.54 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=36.2
Q ss_pred cCCCh--h-HHHHHHHcCCCcEEEEEeCCHHHHHHhccc-C-----CCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 252 FGQGG--H-SCKILERLGKKGRLIAIDKDTESVSLGNKI-T-----DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 252 ~G~Gg--h-s~~il~~~~~~~~l~~~D~D~~a~~~a~~l-~-----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
.|.|- = +.-|.++..++..+.++|+|++|.+.++++ . +++++++.++..+...-+ ..+|.|++--=
T Consensus 127 IGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-----~~~DvV~lAal 201 (276)
T PF03059_consen 127 IGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-----KEYDVVFLAAL 201 (276)
T ss_dssp E---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------SEEEE-TT
T ss_pred EcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-----ccCCEEEEhhh
Confidence 45553 2 334444455778999999999999999665 2 578999988876654322 24666666443
Q ss_pred C
Q psy2380 323 I 323 (733)
Q Consensus 323 v 323 (733)
|
T Consensus 202 V 202 (276)
T PF03059_consen 202 V 202 (276)
T ss_dssp -
T ss_pred c
Confidence 3
No 235
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.93 E-value=8.2 Score=40.83 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=33.5
Q ss_pred CCCEEEEEccCCChh--HHHH--HHHcC----CCcEEEEEeCCHHHHHHhcc
Q psy2380 243 INGIYIDATFGQGGH--SCKI--LERLG----KKGRLIAIDKDTESVSLGNK 286 (733)
Q Consensus 243 ~~~~~vD~T~G~Ggh--s~~i--l~~~~----~~~~l~~~D~D~~a~~~a~~ 286 (733)
++-.+.|+-+|.|-. |.+| ++..+ ++.+|+|+|.|+++++.|++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 345899999999986 4443 34443 25799999999999999953
No 236
>PRK11524 putative methyltransferase; Provisional
Probab=71.83 E-value=6.7 Score=41.93 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=41.7
Q ss_pred hh-hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC
Q psy2380 226 FL-FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT 288 (733)
Q Consensus 226 pv-ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~ 288 (733)
|+ |++.++.... ++|++++|.-.|.| =|..-++++ +-+.+|+|+|++.++.| +||.
T Consensus 194 P~~L~erlI~~~S----~~GD~VLDPF~GSG-TT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILASS----NPGDIVLDPFAGSF-TTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHhC----CCCCEEEECCCCCc-HHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 44 4456666665 48999999988876 344445565 56899999999999999 5774
No 237
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=70.10 E-value=4.5 Score=42.19 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHhcCC
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNTK 477 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~~~~ 477 (733)
+.+++|+.+..+||||||++|+.|+.=+.-.+++++..+..
T Consensus 134 d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~ 174 (238)
T COG2226 134 DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF 174 (238)
T ss_pred CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHH
Confidence 56799999999999999999999999999888887776543
No 238
>PLN02672 methionine S-methyltransferase
Probab=69.73 E-value=6.9 Score=49.24 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC-------------------CCcEEEEccCccchH
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT-------------------DSRFSIIHNCFTELD 303 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~-------------------~~r~~~~~~~f~~~~ 303 (733)
+..++|.-.|.|-=+..++++. +.++|+|+|++++|++.| ++.. .+|+++++++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-- 195 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-- 195 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh--
Confidence 4589999999999999999986 668999999999999998 3331 1479999987643
Q ss_pred HHHHhCCCCcccEEEEcC
Q psy2380 304 IILKKYNIKKIDGILFDL 321 (733)
Q Consensus 304 ~~l~~~~~~~~dgil~DL 321 (733)
.++..+ .++|.|+-|-
T Consensus 196 -~~~~~~-~~fDlIVSNP 211 (1082)
T PLN02672 196 -YCRDNN-IELDRIVGCI 211 (1082)
T ss_pred -hccccC-CceEEEEECC
Confidence 222221 1477777653
No 239
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=69.10 E-value=72 Score=31.98 Aligned_cols=126 Identities=13% Similarity=0.005 Sum_probs=72.2
Q ss_pred eCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEe-cCCCCCCCCCCHHHHHHHHhccCcc
Q psy2380 537 TASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAY-HLPLDMHPKLGNNAQLAKILNFSCT 615 (733)
Q Consensus 537 d~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~-Ht~lD~~~~~G~n~~La~~Lgl~~~ 615 (733)
|+....++++.+.|+|+|++|--. + .....+.++.+.++|+-+... +++.+... -. ..+..+|..-.
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~~---~-----~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~---~~-~~~~~~g~d~v 130 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGVA---D-----DATIKGAVKAAKKHGKEVQVDLINVKDKVK---RA-KELKELGADYI 130 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEeccC---C-----HHHHHHHHHHHHHcCCEEEEEecCCCChHH---HH-HHHHHcCCCEE
Confidence 554457999999999999999421 1 112367888899999999875 67644210 01 11223344322
Q ss_pred ccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEE
Q psy2380 616 RRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 695 (733)
Q Consensus 616 ~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~IT 695 (733)
.. .+ |.-+. .. .+..++ .++.+++.+. . -+|++.+|-..+-++++.+.|+|.++.
T Consensus 131 ~~-~p---g~~~~-------~~-~~~~~~-~i~~l~~~~~----------~--~~i~v~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 131 GV-HT---GLDEQ-------AK-GQNPFE-DLQTILKLVK----------E--ARVAVAGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred EE-cC---CcCcc-------cC-CCCCHH-HHHHHHHhcC----------C--CcEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 11 11 11111 01 122332 3334444432 1 157777787777788888999999998
Q ss_pred ccCC
Q psy2380 696 GEIS 699 (733)
Q Consensus 696 Gd~~ 699 (733)
|--=
T Consensus 186 Gsai 189 (206)
T TIGR03128 186 GGAI 189 (206)
T ss_pred eehh
Confidence 7553
No 240
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=68.65 E-value=13 Score=40.20 Aligned_cols=74 Identities=19% Similarity=0.191 Sum_probs=51.0
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh---cccC--CCcEEEEccCccchHHHHHhCCCCcccE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG---NKIT--DSRFSIIHNCFTELDIILKKYNIKKIDG 316 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a---~~l~--~~r~~~~~~~f~~~~~~l~~~~~~~~dg 316 (733)
-.|..++|.=.|+|.|+-.++++ ++ .+|+|||-++.-.... +++. +.++..+.-..+++.. .+.+|.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~------~~~FDt 185 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN------LGAFDT 185 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc------cCCcCE
Confidence 35789999999999999999987 34 5799999888776653 3433 3345555455655543 245774
Q ss_pred EEEcCCCC
Q psy2380 317 ILFDLGIS 324 (733)
Q Consensus 317 il~DLGvs 324 (733)
+|=+||=
T Consensus 186 -VF~MGVL 192 (315)
T PF08003_consen 186 -VFSMGVL 192 (315)
T ss_pred -EEEeeeh
Confidence 4556663
No 241
>KOG2360|consensus
Probab=67.07 E-value=3.9 Score=45.03 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=69.3
Q ss_pred hhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchHHHHHhCC
Q psy2380 235 WLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELDIILKKYN 310 (733)
Q Consensus 235 ~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~~~l~~~~ 310 (733)
.+.+ .+++.++|.+.-.|.-|..+..-..+.++++|||+|++=.+.- +.|. .+.+..+.+.|.+. -.-+ .
T Consensus 208 ll~p---~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~--~ 281 (413)
T KOG2360|consen 208 LLDP---RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPE--K 281 (413)
T ss_pred hcCC---CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcc--c
Confidence 3455 6789999999999998888888777789999999999877664 3332 34455666777664 1212 2
Q ss_pred CCcccEEEEcCCCCccccCCCCCCcccCCCCCccccCCCC
Q psy2380 311 IKKIDGILFDLGISSNQINNELRGFSFLLDGPLDMRMDIT 350 (733)
Q Consensus 311 ~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~ 350 (733)
...+-.||+|=|.|- +-=+.|||+++.
T Consensus 282 ~~~v~~iL~DpscSg-------------Sgm~~r~~~~~~ 308 (413)
T KOG2360|consen 282 FRDVTYILVDPSCSG-------------SGMVSRQDEDPG 308 (413)
T ss_pred ccceeEEEeCCCCCC-------------CccccceeeccC
Confidence 256889999988873 112678888866
No 242
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=66.83 E-value=29 Score=34.28 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhC
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKY 309 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~ 309 (733)
+...+.+.+ +.|--++..--|.|==|++||++--++..|++++-|++-...-.++. +-+.++++.=.+++.++.+.
T Consensus 38 ~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 38 RKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-PGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-CCccccccchhhHHHHHhhc
Confidence 334445555 55668889999999999999999878899999999999888764443 33568999888888889887
Q ss_pred CCCcccEEEEcC
Q psy2380 310 NIKKIDGILFDL 321 (733)
Q Consensus 310 ~~~~~dgil~DL 321 (733)
....+|.|+--|
T Consensus 114 ~gq~~D~viS~l 125 (194)
T COG3963 114 KGQFFDSVISGL 125 (194)
T ss_pred CCCeeeeEEecc
Confidence 777788776443
No 243
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=66.38 E-value=24 Score=35.71 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccC--CC-cEEEEccCccchHHHHHhCCCCcccEEE
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KIT--DS-RFSIIHNCFTELDIILKKYNIKKIDGIL 318 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~--~~-r~~~~~~~f~~~~~~l~~~~~~~~dgil 318 (733)
.+..++|...|.|.-+..+++. ..+++++|.++++++.++ ++. .. ++.+.+.++.++. .+. -.++|.|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~-~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKG-AKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCC-CCCccEEE
Confidence 3678999999999888777764 346999999999999884 443 22 5777777665432 111 14688887
Q ss_pred Ec
Q psy2380 319 FD 320 (733)
Q Consensus 319 ~D 320 (733)
.+
T Consensus 118 ~~ 119 (224)
T TIGR01983 118 CM 119 (224)
T ss_pred eh
Confidence 63
No 244
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=66.27 E-value=11 Score=41.33 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=53.5
Q ss_pred HHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCC---CcEEEEcc-CccchHHHH
Q psy2380 232 AINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITD---SRFSIIHN-CFTELDIIL 306 (733)
Q Consensus 232 vl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~---~r~~~~~~-~f~~~~~~l 306 (733)
.+++-+. ++|+.++|==+|.||=- .|.---++++||.|+|..++.-|+ +|+. +.+.++.. +=.+++ |
T Consensus 189 mVNLa~v---~~G~~vlDPFcGTGgiL---iEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l 260 (347)
T COG1041 189 MVNLARV---KRGELVLDPFCGTGGIL---IEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--L 260 (347)
T ss_pred HHHHhcc---ccCCEeecCcCCccHHH---HhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--C
Confidence 3344444 78999999999999843 333224789999999999999994 7752 34545544 444444 3
Q ss_pred HhCCCCcccEEEEc
Q psy2380 307 KKYNIKKIDGILFD 320 (733)
Q Consensus 307 ~~~~~~~~dgil~D 320 (733)
++ +++|+|.-|
T Consensus 261 ~~---~~vdaIatD 271 (347)
T COG1041 261 RD---NSVDAIATD 271 (347)
T ss_pred CC---CccceEEec
Confidence 32 359999987
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=66.04 E-value=33 Score=34.98 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=46.2
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHH---HHHHHcCCCcEEEEEeCCHHHHHHh--ccc-CCCcEEEEccCccc
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSC---KILERLGKKGRLIAIDKDTESVSLG--NKI-TDSRFSIIHNCFTE 301 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~---~il~~~~~~~~l~~~D~D~~a~~~a--~~l-~~~r~~~~~~~f~~ 301 (733)
..+|++-.++| +++|-.=-=.||=.. .+|+.++++++|+|+|+|....++. +.- ..+|+++++++=.+
T Consensus 23 ~~qeli~~~kP------d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 23 AYQELIWELKP------DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp HHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred HHHHHHHHhCC------CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 34666666665 467766555666554 4577777899999999998777653 111 14799999997777
Q ss_pred hHHHHHhCCC---CcccEEEEc
Q psy2380 302 LDIILKKYNI---KKIDGILFD 320 (733)
Q Consensus 302 ~~~~l~~~~~---~~~dgil~D 320 (733)
.+.+.+-... ....-|+.|
T Consensus 97 ~~~~~~v~~~~~~~~~vlVilD 118 (206)
T PF04989_consen 97 PEIVDQVRELASPPHPVLVILD 118 (206)
T ss_dssp THHHHTSGSS----SSEEEEES
T ss_pred HHHHHHHHHhhccCCceEEEEC
Confidence 6655432222 334456665
No 246
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=65.51 E-value=8.5 Score=41.37 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=54.0
Q ss_pred HhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-ccCC---CcEEEEccC-ccchHHHHH
Q psy2380 233 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KITD---SRFSIIHNC-FTELDIILK 307 (733)
Q Consensus 233 l~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l~~---~r~~~~~~~-f~~~~~~l~ 307 (733)
++.+.. .+++.++|.-+|+|==+..+++.. |+.++.-+|.|..|++.|+ ++.. ++.+++++| |++...
T Consensus 151 l~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~--- 223 (300)
T COG2813 151 LETLPP---DLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG--- 223 (300)
T ss_pred HHhCCc---cCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc---
Confidence 344544 556799999999999999999885 7999999999999999994 5642 232344443 555432
Q ss_pred hCCCCcccEEEE
Q psy2380 308 KYNIKKIDGILF 319 (733)
Q Consensus 308 ~~~~~~~dgil~ 319 (733)
++|.|+-
T Consensus 224 -----kfd~Iis 230 (300)
T COG2813 224 -----KFDLIIS 230 (300)
T ss_pred -----cccEEEe
Confidence 4677763
No 247
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=64.44 E-value=10 Score=32.75 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=34.2
Q ss_pred CchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEe
Q psy2380 677 AAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAA 716 (733)
Q Consensus 677 sG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~ 716 (733)
.+..+.+.+...|||++|+|.+..+....-.+.|+.++..
T Consensus 41 ~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 41 GGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred cchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 3445666667799999999999999999999999999986
No 248
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=63.70 E-value=5.9 Score=38.31 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=32.4
Q ss_pred HhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhcc-CCCCCHHHHHH
Q psy2380 359 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSI-TPITRTKQLVE 404 (733)
Q Consensus 359 ~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~-~~~~tt~~l~~ 404 (733)
+|+.|.+|| +-+--= ..+.|++|++.|++ +||++..||.+
T Consensus 91 iNtAs~eeL-~~lpgI-----G~~kA~aIi~yRe~~G~f~sv~dL~~ 131 (149)
T COG1555 91 INTASAEEL-QALPGI-----GPKKAQAIIDYREENGPFKSVDDLAK 131 (149)
T ss_pred ccccCHHHH-HHCCCC-----CHHHHHHHHHHHHHcCCCCcHHHHHh
Confidence 799999999 433333 36779999999986 49999999987
No 249
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=63.39 E-value=18 Score=43.84 Aligned_cols=49 Identities=8% Similarity=0.065 Sum_probs=36.3
Q ss_pred cEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 269 GRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 269 ~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
.+++|+|+|++|++.|+ ++. .+++++.++++.++..... .+.+|.|+.|
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~---~~~~d~IvtN 310 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP---KGPTGLVISN 310 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc---cCCCCEEEEC
Confidence 47999999999999994 553 4678999999887643211 1357888887
No 250
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=63.24 E-value=36 Score=35.78 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=46.8
Q ss_pred CcEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccC--------------ChhHHHHHHHCCCeEEEe
Q psy2380 657 KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI--------------SESTVYISRESGVAYFAA 716 (733)
Q Consensus 657 ~~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~--------------~~h~~~~A~~~g~~li~~ 716 (733)
..++++++++.|+||+++-=.-.+.+++|.+.+||++|+=-. ++--.....+++++++..
T Consensus 25 ~GLqv~~~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~ 98 (250)
T COG0327 25 NGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAA 98 (250)
T ss_pred ceEEeCCCCcccceEEEEeeCCHHHHHHHHHCCCCEEEEcCchhcCCCccccccchHHHHHHHHHhCCCeEEEc
Confidence 356776667899999999999999999999999999998322 122245667888998877
No 251
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=62.60 E-value=20 Score=36.37 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC-CCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT-DSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~-~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
-+..+|.-.|.|-=|..|..++ .+|.++|..+.|+++| +|+. .+++++.+..+.+. ..+ .++|.|++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~---~P~---~~FDLIV~ 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF---WPE---GRFDLIVL 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------S---S-EEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC---CCC---CCeeEEEE
Confidence 3678999999999999998886 4799999999999999 5786 36899988877653 222 46777764
No 252
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=62.17 E-value=29 Score=38.15 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=47.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc-CCCcEEEEcc-CccchHHHHHhCCCCcccEEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI-TDSRFSIIHN-CFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l-~~~r~~~~~~-~f~~~~~~l~~~~~~~~dgil~ 319 (733)
.++..+||.=.+-||=|..++++ +++|+|+|..+-+ .+| .++|++.+.. +|..... ...+|-++-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~----~~L~~~~~V~h~~~d~fr~~p~------~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA----QSLMDTGQVEHLRADGFKFRPP------RKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC----HhhhCCCCEEEEeccCcccCCC------CCCCCEEEE
Confidence 57899999999999999999987 4699999966532 333 2567776554 5655332 135777777
Q ss_pred cC
Q psy2380 320 DL 321 (733)
Q Consensus 320 DL 321 (733)
|.
T Consensus 277 Dm 278 (357)
T PRK11760 277 DM 278 (357)
T ss_pred ec
Confidence 64
No 253
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=62.15 E-value=7 Score=37.93 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHhcC
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNT 476 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~~~ 476 (733)
+...+|+.+.++|||||+++++.|.- ++....+.+..+.
T Consensus 59 d~~~~l~ei~rvLkpGG~l~i~d~~~-~~~~~~~~~~~~~ 97 (160)
T PLN02232 59 DRLRAMKEMYRVLKPGSRVSILDFNK-SNQSVTTFMQGWM 97 (160)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCC-CChHHHHHHHHHH
Confidence 56789999999999999999999874 5566666665543
No 254
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=61.75 E-value=5.9 Score=32.72 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=32.5
Q ss_pred HhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhcc-CCCCCHHHHHH
Q psy2380 359 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSI-TPITRTKQLVE 404 (733)
Q Consensus 359 ~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~-~~~~tt~~l~~ 404 (733)
||+.+.++|.+++..-| .+.|++|++.|.. +++++..||.+
T Consensus 10 vNta~~~~L~~~ipgig-----~~~a~~Il~~R~~~g~~~s~~dL~~ 51 (69)
T TIGR00426 10 INTATAEELQRAMNGVG-----LKKAEAIVSYREEYGPFKTVEDLKQ 51 (69)
T ss_pred CcCCCHHHHHhHCCCCC-----HHHHHHHHHHHHHcCCcCCHHHHHc
Confidence 68899999998755445 3579999999984 57998888865
No 255
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=61.27 E-value=28 Score=35.81 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=49.3
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh--c-ccC-------------CCcEE
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG--N-KIT-------------DSRFS 293 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a--~-~l~-------------~~r~~ 293 (733)
.+.++.+.. ++++.+++-=+|.|-+...++++ +-.|+|+|..+.|++.+ + .+. .++++
T Consensus 27 ~~~~~~l~~---~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 27 VEYLDSLAL---KPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp HHHHHHHTT---STSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred HHHHHhcCC---CCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 344444444 56778999999999999999876 46899999999999997 2 221 24688
Q ss_pred EEccCccchH
Q psy2380 294 IIHNCFTELD 303 (733)
Q Consensus 294 ~~~~~f~~~~ 303 (733)
++.+.|-++.
T Consensus 101 ~~~gDfF~l~ 110 (218)
T PF05724_consen 101 IYCGDFFELP 110 (218)
T ss_dssp EEES-TTTGG
T ss_pred EEEcccccCC
Confidence 8999887754
No 256
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=60.97 E-value=41 Score=33.94 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=47.5
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccCCCcEEEEccCccchHHHHHhCCCCcccEEEE
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKITDSRFSIIHNCFTELDIILKKYNIKKIDGILF 319 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~ 319 (733)
+|+..++|.=+|.|-=-..+-++ .+.+.+|+|+|++.+..+ +| -+..++++ +++-|....-+++|.|++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----Gv~Viq~D---ld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----GVSVIQGD---LDEGLADFPDQSFDYVIL 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----CCCEEECC---HHHhHhhCCCCCccEEeh
Confidence 36889999999987655444443 588999999999999887 33 35556553 344455444456777765
No 257
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=60.47 E-value=30 Score=32.52 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=66.4
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc----cc-------CCCcEEEEccC--ccch---HHH
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN----KI-------TDSRFSIIHNC--FTEL---DII 305 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~----~l-------~~~r~~~~~~~--f~~~---~~~ 305 (733)
.+++.++|.=.|.|..+..+.+. + .+++|+|.++++++... .. .++.+.++..+ +..+ ..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~ 97 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEF 97 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHH
Confidence 56889999999999888888443 3 39999999999996620 00 13556555443 3333 444
Q ss_pred HHhCC-CCcccEEEE--cCCCCccccCCCCCCcccCCCCCccccCCCCCCCCHHHHHhccCHHHHHHHHHHcC
Q psy2380 306 LKKYN-IKKIDGILF--DLGISSNQINNELRGFSFLLDGPLDMRMDITRGISASKWLANATEFNIKKVIQDYG 375 (733)
Q Consensus 306 l~~~~-~~~~dgil~--DLGvss~q~~~~~rGfs~~~~~pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~yg 375 (733)
+++.. .-+.+|.++ +..... . ....-.+++++... .+..+-++.+++.++++++|
T Consensus 98 l~~l~~~LkpgG~l~~~~~~~~~----------~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ll~~~G 155 (161)
T PF13489_consen 98 LKELSRLLKPGGYLVISDPNRDD----------P-SPRSFLKWRYDRPY----GGHVHFFSPDELRQLLEQAG 155 (161)
T ss_dssp HHHHHHCEEEEEEEEEEEEBTTS----------H-HHHHHHHCCGTCHH----TTTTEEBBHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCEEEEEEcCCcc----------h-hhhHHHhcCCcCcc----CceeccCCHHHHHHHHHHCC
Confidence 44321 224455433 222111 0 00000112222211 14458889999999999998
No 258
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=60.09 E-value=51 Score=33.60 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=52.0
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc----cC---------CCcEEE
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK----IT---------DSRFSI 294 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~----l~---------~~r~~~ 294 (733)
.+.++++.++. +++++++|.=-|-|.=..+..-.. +-.+.+|++.+++..+.|+. ++ ..++.+
T Consensus 30 ~~~~il~~~~l---~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 30 FVSKILDELNL---TPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHhCC---CCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 44556666666 789999999999998766555444 34569999999999887732 21 357899
Q ss_pred EccCccchHHHHHhCCCCcccEEEEcC
Q psy2380 295 IHNCFTELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 295 ~~~~f~~~~~~l~~~~~~~~dgil~DL 321 (733)
.+++|-+-+..-.- +...|.|++|=
T Consensus 106 ~~gdfl~~~~~~~~--~s~AdvVf~Nn 130 (205)
T PF08123_consen 106 IHGDFLDPDFVKDI--WSDADVVFVNN 130 (205)
T ss_dssp ECS-TTTHHHHHHH--GHC-SEEEE--
T ss_pred eccCccccHhHhhh--hcCCCEEEEec
Confidence 99999875421111 12468888763
No 259
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=59.11 E-value=30 Score=38.88 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=60.6
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-c--cC---CCcEEEEccC-ccch
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-K--IT---DSRFSIIHNC-FTEL 302 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~--l~---~~r~~~~~~~-f~~~ 302 (733)
++....+.. .-.|+.++|+-.=.||=|..-+.. .-.+|+++|.+..|++.|+ + |. .++..+++++ |+.+
T Consensus 206 R~~R~~l~~--~~~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l 281 (393)
T COG1092 206 RDNRRALGE--LAAGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWL 281 (393)
T ss_pred HHHHHHHhh--hccCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHH
Confidence 345555543 123889999999899999887754 2238999999999999994 4 33 4678888876 6555
Q ss_pred HHHHHhCCCCcccEEEEc
Q psy2380 303 DIILKKYNIKKIDGILFD 320 (733)
Q Consensus 303 ~~~l~~~~~~~~dgil~D 320 (733)
.+.- ..| .++|.|++|
T Consensus 282 ~~~~-~~g-~~fDlIilD 297 (393)
T COG1092 282 RKAE-RRG-EKFDLIILD 297 (393)
T ss_pred HHHH-hcC-CcccEEEEC
Confidence 5443 333 479999987
No 260
>KOG3339|consensus
Probab=58.94 E-value=27 Score=34.82 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=26.4
Q ss_pred ccCCChhHHHHHHHcC------CCcEEEEEeCCHHHHHHhcc
Q psy2380 251 TFGQGGHSCKILERLG------KKGRLIAIDKDTESVSLGNK 286 (733)
Q Consensus 251 T~G~Gghs~~il~~~~------~~~~l~~~D~D~~a~~~a~~ 286 (733)
-+|.||||.+|++-++ ..-+.++-|-|.-..+.+..
T Consensus 44 vlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~ 85 (211)
T KOG3339|consen 44 VLGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARS 85 (211)
T ss_pred EEcCCCcHHHHHHHHHHHHhhcCceEEEEecCchhhHHHHHh
Confidence 5899999999987532 12456688888888777643
No 261
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=58.48 E-value=8.1 Score=42.89 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCcccEEEEcCCCCccccCCCCCCcccCCCCCcc
Q psy2380 270 RLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGFSFLLDGPLD 344 (733)
Q Consensus 270 ~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLGvss~q~~~~~rGfs~~~~~pLD 344 (733)
.++|.|+|+.+++.|+ +.. .+.++|.+..+..+...+ +.+|.++.|. --|
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-----~~~gvvI~NP----------PYG---------- 310 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-----EEYGVVISNP----------PYG---------- 310 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-----CcCCEEEeCC----------Ccc----------
Confidence 4889999999999994 332 578999999998876655 2467787653 333
Q ss_pred ccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q psy2380 345 MRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEIIL 407 (733)
Q Consensus 345 mRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~~~~~tt~~l~~~i~ 407 (733)
-|.. +++.+..+++++| +..++.....+.--++|..++.....
T Consensus 311 eRlg--------------~~~~v~~LY~~fg------~~lk~~~~~ws~~v~tt~e~~~~~~~ 353 (381)
T COG0116 311 ERLG--------------SEALVAKLYREFG------RTLKRLLAGWSRYVFTTSEDLLFCLG 353 (381)
T ss_pred hhcC--------------ChhhHHHHHHHHH------HHHHHHhcCCceEEEEccHHHHHHHh
Confidence 3443 4445555777766 23444444544455666666655433
No 262
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=58.20 E-value=1.5e+02 Score=29.34 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=66.8
Q ss_pred eCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEE-ecCCCCCCCCCCHHHHHHHHhccCcc
Q psy2380 537 TASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYA-YHLPLDMHPKLGNNAQLAKILNFSCT 615 (733)
Q Consensus 537 d~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~-~Ht~lD~~~~~G~n~~La~~Lgl~~~ 615 (733)
|+....++++.+.|+|.|++|.-. + .....+.++.+.++|+-+.. .+++.+... .-. +...|..-.
T Consensus 64 ~~~~~~~~~~~~aGad~i~~h~~~---~-----~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e---~~~--~~~~~~d~v 130 (202)
T cd04726 64 DAGALEAEMAFKAGADIVTVLGAA---P-----LSTIKKAVKAAKKYGKEVQVDLIGVEDPEK---RAK--LLKLGVDIV 130 (202)
T ss_pred cccHHHHHHHHhcCCCEEEEEeeC---C-----HHHHHHHHHHHHHcCCeEEEEEeCCCCHHH---HHH--HHHCCCCEE
Confidence 444456789999999999999633 0 11235677888888988776 376665321 111 222232211
Q ss_pred ccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEE
Q psy2380 616 RRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 695 (733)
Q Consensus 616 ~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~IT 695 (733)
.. ..++-+. . ...+... +.++.+++.. + -.|.+.+|-..+-++++.+.|+|.++.
T Consensus 131 ~~----~~~~~~~-----~--~~~~~~~-~~i~~~~~~~----------~---~~i~~~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 131 IL----HRGIDAQ-----A--AGGWWPE-DDLKKVKKLL----------G---VKVAVAGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred EE----cCccccc-----c--cCCCCCH-HHHHHHHhhc----------C---CCEEEECCcCHHHHHHHHhcCCCEEEE
Confidence 11 0111111 0 1012222 3333443321 1 134556666566688888899999988
Q ss_pred ccC
Q psy2380 696 GEI 698 (733)
Q Consensus 696 Gd~ 698 (733)
|--
T Consensus 186 Gsa 188 (202)
T cd04726 186 GRA 188 (202)
T ss_pred eeh
Confidence 853
No 263
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=57.48 E-value=21 Score=35.74 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=36.7
Q ss_pred hhh-hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 225 GFL-FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 225 ~pv-ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
+|+ +++.+++... ++|++++|.-.|.| -|..-.+++ +-+-+|+|+|++..+.|+
T Consensus 176 kP~~l~~~lI~~~t----~~gdiVlDpF~GSG-TT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 176 KPVELIERLIKAST----NPGDIVLDPFAGSG-TTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-HHHHHHHHHHHS-----TT-EEEETT-TTT-HHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHhhh----ccceeeehhhhccC-hHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 454 4566776665 47999999877765 455555565 568999999999999884
No 264
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=57.38 E-value=40 Score=36.22 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=50.6
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc-cc--C---CCcEEEEccC-ccchHHHHHhCCCCccc
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN-KI--T---DSRFSIIHNC-FTELDIILKKYNIKKID 315 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~-~l--~---~~r~~~~~~~-f~~~~~~l~~~~~~~~d 315 (733)
+++.++|+-.=.||=|.+-+.. .-.+|+++|.+..|++.++ ++ . .++++++..+ |..+.+ +++. .++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~~~~--~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-LKKG--GRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-HHHT--T-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-HhcC--CCCC
Confidence 5789999988889988876542 3357999999999999984 43 2 3688888765 554544 4443 4799
Q ss_pred EEEEc
Q psy2380 316 GILFD 320 (733)
Q Consensus 316 gil~D 320 (733)
.|++|
T Consensus 198 ~IIlD 202 (286)
T PF10672_consen 198 LIILD 202 (286)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99998
No 265
>KOG4589|consensus
Probab=55.42 E-value=17 Score=36.53 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=34.2
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCH
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDT 278 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~ 278 (733)
+|+..++||-+--|--|.---++.+|+|.|+|+|.++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 4689999999999999999999999999999999874
No 266
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=54.88 E-value=1.1e+02 Score=31.36 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeecccccccCCCCCHHHHHHHHHh
Q psy2380 573 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITR 652 (733)
Q Consensus 573 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~ 652 (733)
..++.+.+.+-++...-+|++.|... -|. ..+ .+.++.+|+
T Consensus 119 ~~~~~~~l~~~gvd~~~~H~g~D~q~-~G~-------------------------------------~~~-~~~l~~ik~ 159 (217)
T COG0269 119 PEQRAKWLKELGVDQVILHRGRDAQA-AGK-------------------------------------SWG-EDDLEKIKK 159 (217)
T ss_pred HHHHHHHHHHhCCCEEEEEecccHhh-cCC-------------------------------------Ccc-HHHHHHHHH
Confidence 45666667778888888888888642 111 112 344455655
Q ss_pred HcCCCcEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccC
Q psy2380 653 KIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI 698 (733)
Q Consensus 653 ~l~~~~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~ 698 (733)
... ..-+|||.+|-..+-++.+...|+|+||-|=-
T Consensus 160 ~~~-----------~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGra 194 (217)
T COG0269 160 LSD-----------LGAKVAVAGGITPEDIPLFKGIGADIVIVGRA 194 (217)
T ss_pred hhc-----------cCceEEEecCCCHHHHHHHhcCCCCEEEECch
Confidence 442 23589999999999999999999999998854
No 267
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=54.35 E-value=25 Score=30.86 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCC
Q psy2380 676 GAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 718 (733)
Q Consensus 676 GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH 718 (733)
|.|....+...+.|||++|+|.+..+......+.|+.++...-
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC
Confidence 4456677777779999999999999998888899999986653
No 268
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=54.03 E-value=6.2 Score=33.44 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhccccCCeEEE
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVV 457 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~v 457 (733)
++.+.+++.+.++|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7899999999999999999986
No 269
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=53.65 E-value=35 Score=32.23 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=36.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHc---CCCcEEEEEeCCHHHHHHhc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERL---GKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~---~~~~~l~~~D~D~~a~~~a~ 285 (733)
.+...+||.--|.|.=|..+...+ .++.+|+|+|.|++..+.+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~ 70 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ 70 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH
Confidence 456799999999998888888722 36789999999999998884
No 270
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=52.59 E-value=30 Score=34.07 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=43.5
Q ss_pred CccccCCCCCCCCHHHHHhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhccCCCCCHHHHHHHHHhhcC
Q psy2380 342 PLDMRMDITRGISASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPITRTKQLVEIILKSIR 411 (733)
Q Consensus 342 pLDmRm~~~~~~~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~~~~~tt~~l~~~i~~~~~ 411 (733)
++||+|. -+-+|+.+.++....|..==|...+ |..+...| ||.+..+|.+...+++-
T Consensus 1 ~~~~~~~-------l~~~N~l~~~~f~~~l~~~~e~~~W---a~~~~~~R---Pf~s~~~L~~a~~~~~~ 57 (166)
T PRK13798 1 LMHQGMG-------LAEFNALPERQAVHALFECCHSTAW---ARRLAAAR---PFADHDALLAAADEALA 57 (166)
T ss_pred CCCCcCC-------HHHHhCCCHHHHHHHHHHHhcChHH---HHHHHHcC---CCCCHHHHHHHHHHHHH
Confidence 3566664 6889999999999988765554444 46666667 99999999998887753
No 271
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=52.49 E-value=21 Score=36.57 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=27.7
Q ss_pred CEEEEEccCCChhH--HHHHHHcCCCcEEEEEeCCHHHHHHh-ccc
Q psy2380 245 GIYIDATFGQGGHS--CKILERLGKKGRLIAIDKDTESVSLG-NKI 287 (733)
Q Consensus 245 ~~~vD~T~G~Gghs--~~il~~~~~~~~l~~~D~D~~a~~~a-~~l 287 (733)
-..-|.++|+|+=- ..+|.. ..-..|+|-|+|++|++.| ++|
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~-~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHR-RRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTG-GGEEEEEEEES-HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhh-HHHHhHhcccCCHHHHHHHHHhh
Confidence 35669999977532 233332 2347899999999999999 455
No 272
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.40 E-value=1.2e+02 Score=32.03 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=67.6
Q ss_pred HHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCe---EEEecCCCCCCCCCCHHHHHHHHh-ccCcc
Q psy2380 540 LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKIN---LYAYHLPLDMHPKLGNNAQLAKIL-NFSCT 615 (733)
Q Consensus 540 ~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~---vy~~Ht~lD~~~~~G~n~~La~~L-gl~~~ 615 (733)
.+-++++.+.|+|-||.|- + | .+...+.+..+.++|+. +.+.+|+.+.. ..+++.. |+--.
T Consensus 105 e~f~~~~~~aGvdgviipD-l---p-----~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri------~~i~~~~~gfiy~ 169 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVAD-L---P-----LEESGDLVEAAKKHGVKPIFLVAPNADDERL------KQIAEKSQGFVYL 169 (256)
T ss_pred HHHHHHHHHcCCCEEEECC-C---C-----hHHHHHHHHHHHHCCCcEEEEECCCCCHHHH------HHHHHhCCCCEEE
Confidence 4678999999999999993 1 1 12335788889999966 55666654431 1222221 11100
Q ss_pred ccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCc-hhHHHHhhhCCCcEEE
Q psy2380 616 RRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA-QNLLTDAINEGVTAYI 694 (733)
Q Consensus 616 ~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG-~~~i~~a~~~g~D~~I 694 (733)
.. ..|.-|. .=.++ -.+.++++++++..+. .|++-.|-. .+-++.+.+.|||.+|
T Consensus 170 vs----~~G~TG~-----~~~~~--~~~~~~i~~lr~~~~~-------------pi~vgfGI~~~e~~~~~~~~GADgvV 225 (256)
T TIGR00262 170 VS----RAGVTGA-----RNRAA--SALNELVKRLKAYSAK-------------PVLVGFGISKPEQVKQAIDAGADGVI 225 (256)
T ss_pred EE----CCCCCCC-----cccCC--hhHHHHHHHHHhhcCC-------------CEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 00 1133332 00022 2467777777764421 244433322 3567788889999999
Q ss_pred EccC
Q psy2380 695 SGEI 698 (733)
Q Consensus 695 TGd~ 698 (733)
.|-.
T Consensus 226 vGSa 229 (256)
T TIGR00262 226 VGSA 229 (256)
T ss_pred ECHH
Confidence 9954
No 273
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=51.00 E-value=23 Score=36.92 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=35.8
Q ss_pred CCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 243 INGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
++..++|.-+|+|-=|+-+.+. +..|+|+|.+++.++.|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak 98 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAK 98 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHH
Confidence 6789999999999888888864 489999999999999995
No 274
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=49.26 E-value=36 Score=35.54 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=33.1
Q ss_pred HHHHHHH--HCCCCEEEeccCCCccCCccc---cc-C--hHHHHHHHHHhcCC-eEEEecCCCCCC
Q psy2380 541 DLIKTAV--DMNADAILVHHGYFWKGENSN---IV-G--IKKKRLEQLIINKI-NLYAYHLPLDMH 597 (733)
Q Consensus 541 ~vi~~Ai--~~~~dlIItHHP~~f~~~~~~---~~-~--~~~~~~~~l~~~~I-~vy~~Ht~lD~~ 597 (733)
+.++++. +.+-.+|++|||++-...... .. + ...+....+.++++ .+++-|++.+..
T Consensus 155 ~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~ 220 (262)
T cd07395 155 EQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAG 220 (262)
T ss_pred HHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCc
Confidence 3444443 223569999999974332111 01 1 22355556667888 578888887654
No 275
>PRK10459 colanic acid exporter; Provisional
Probab=49.11 E-value=2.6e+02 Score=31.81 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=18.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2380 129 FAHSGLALSIGLGACLHASFLYWYLRH 155 (733)
Q Consensus 129 ~Gi~GaalAt~is~~v~~iL~~~~l~r 155 (733)
+|..+.++++.++.++..++.++..++
T Consensus 167 ~g~~~l~~~~~~~~~~~~l~~~~~~~~ 193 (492)
T PRK10459 167 PGALAAILGYLVNSSVRTLLFGYFGRK 193 (492)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888888877766655444333
No 276
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=48.53 E-value=3.4e+02 Score=28.32 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCHHHHHH---HHHhHcCCCcEEe--CC---CC---Ccee----EEEEeeCCch---hHHHHhhhCCCcEEEEccCChh
Q psy2380 640 IITIKDLFH---HITRKIGKKPIVI--GD---LN---KKIY----EIGWCTGAAQ---NLLTDAINEGVTAYISGEISES 701 (733)
Q Consensus 640 ~~s~~el~~---~lk~~l~~~~v~~--~~---~~---~~v~----rVai~~GsG~---~~i~~a~~~g~D~~ITGd~~~h 701 (733)
|.+-+|++. ...+.||.+.+.+ +. .+ +.|+ +.-+.-|+|- +-.++..++|||+.+||++-|.
T Consensus 146 p~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 146 PLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred CCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 334444443 3456789886554 32 11 2222 2245667663 4455557779999999999877
Q ss_pred HH
Q psy2380 702 TV 703 (733)
Q Consensus 702 ~~ 703 (733)
+-
T Consensus 226 ~~ 227 (240)
T COG1646 226 DP 227 (240)
T ss_pred CH
Confidence 64
No 277
>PRK04148 hypothetical protein; Provisional
Probab=47.20 E-value=88 Score=29.73 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=42.8
Q ss_pred HHHHHHHHhHcCCCcEEeCCCCCceeEEEE-eeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeC
Q psy2380 644 KDLFHHITRKIGKKPIVIGDLNKKIYEIGW-CTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAG 717 (733)
Q Consensus 644 ~el~~~lk~~l~~~~v~~~~~~~~v~rVai-~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~g 717 (733)
+++++.+.+.+... + -+||.. ..|+|.++.....+.|.|+.-+ |+..+....|++.+...+..-
T Consensus 2 ~~i~~~l~~~~~~~--------~-~~kileIG~GfG~~vA~~L~~~G~~ViaI-Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 2 DTIAEFIAENYEKG--------K-NKKIVELGIGFYFKVAKKLKESGFDVIVI-DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred hHHHHHHHHhcccc--------c-CCEEEEEEecCCHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHhCCeEEECc
Confidence 46777777666321 1 134443 5678877777777889876554 888888888999987766543
No 278
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=46.89 E-value=22 Score=35.27 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhccccCCeEEEEecc
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVISFH 461 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~visfh 461 (733)
+.++..+..+.++|+|||++++..|.
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 35788999999999999999997654
No 279
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=46.78 E-value=38 Score=29.62 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=34.9
Q ss_pred CCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCC
Q psy2380 676 GAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 718 (733)
Q Consensus 676 GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH 718 (733)
|.|....+....+|||++|+|.+..+......+.|+.++....
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGGIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcccCccHHHHHHHcCCEEEEcCC
Confidence 3444556666789999999999999998888999999987654
No 280
>KOG2187|consensus
Probab=46.72 E-value=39 Score=38.95 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-c--C-CCcEEEEccC
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-I--T-DSRFSIIHNC 298 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l--~-~~r~~~~~~~ 298 (733)
..+.+.+|+..|.|==+.++.+.. .+|||+..+|+|++-|++ - . -.+.+|+.+.
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 567899999999999999998765 679999999999999943 2 1 2578888883
No 281
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=46.37 E-value=89 Score=31.24 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2380 38 KNIAVRRILKKMGPSVFSVFAAQISLMLNTNIAS 71 (733)
Q Consensus 38 ~~~~lk~ll~l~iPiil~~~v~qi~~~iD~~ias 71 (733)
++...+.++.-++|.++ ..|=.-..-+.+.+
T Consensus 37 sdeeik~Il~e~ipqIl---eeQkkGitARkL~g 67 (226)
T COG4858 37 SDEEIKIILEEMIPQIL---EEQKKGITARKLLG 67 (226)
T ss_pred CHHHHHHHHHHHHHHHH---HhhhccchHHHHcC
Confidence 45789999999999986 35555555555544
No 282
>PRK00124 hypothetical protein; Validated
Probab=46.33 E-value=1.3e+02 Score=29.30 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHhHcCCCcEEeC--CC------CCceeEEEEeeCCch--hHHHHhhhCCCcEEEEccCChhHHHHHHHC
Q psy2380 640 IITIKDLFHHITRKIGKKPIVIG--DL------NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEISESTVYISRES 709 (733)
Q Consensus 640 ~~s~~el~~~lk~~l~~~~v~~~--~~------~~~v~rVai~~GsG~--~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~ 709 (733)
.+.+.+.+.++.++++++.+-+. +. ...|+.|-|-.|.-. +.|-+..+.| |++||.|+. -+..+.+.
T Consensus 9 ACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g-DiVIT~Di~--LAa~~l~K 85 (151)
T PRK00124 9 ACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKG-DIVITQDYG--LAALALEK 85 (151)
T ss_pred CCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCC-CEEEeCCHH--HHHHHHHC
Confidence 45688999999999999977663 21 224677777666553 3455556666 999999975 34455677
Q ss_pred CCeEEE-eCChhh
Q psy2380 710 GVAYFA-AGHHAT 721 (733)
Q Consensus 710 g~~li~-~gH~~s 721 (733)
|..+++ =|+..|
T Consensus 86 ga~vl~prG~~yt 98 (151)
T PRK00124 86 GAIVLNPRGYIYT 98 (151)
T ss_pred CCEEECCCCcCCC
Confidence 777666 344333
No 283
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=46.04 E-value=54 Score=36.08 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=50.1
Q ss_pred cCCC-EEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 242 RING-IYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 242 ~~~~-~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
+|+. +.|=+.=|-|.|.-.+++.++ .+|++||+.++-.+.|++|- .-..++++-++..+.+++ .+|+|+-=
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lG--Ad~~i~~~~~~~~~~~~~----~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLG--ADHVINSSDSDALEAVKE----IADAIIDT 236 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhC--CcEEEEcCCchhhHHhHh----hCcEEEEC
Confidence 5665 556666678888889998874 89999999999999998883 345566554555445543 26766643
No 284
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=45.74 E-value=16 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhccccCCeEEEE
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVI 458 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~vi 458 (733)
++.++.|+.+.+.|+|||+++|=
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEE
Confidence 67888999999999999999874
No 285
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.28 E-value=1.1e+02 Score=29.94 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=38.1
Q ss_pred EeCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHh---cCCeEEEecCCCCC
Q psy2380 536 VTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLII---NKINLYAYHLPLDM 596 (733)
Q Consensus 536 ld~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~---~~I~vy~~Ht~lD~ 596 (733)
.+-+.+.+++|.+.|+|.|..+-|+.+.+.. ......+.++.+.+ .++.++.++-|...
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEG--DWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCC--CHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 4556677788899999999999887665421 01122344444444 48999888876554
No 286
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=45.04 E-value=40 Score=31.41 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=36.3
Q ss_pred eCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCC
Q psy2380 675 TGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGH 718 (733)
Q Consensus 675 ~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH 718 (733)
.|.|....+.+.++|+|++|++.+.......-++.|+-++-+-=
T Consensus 51 ~g~G~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 51 KGAGIRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred CcchHHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 45566677778899999999999999998888999987776543
No 287
>PRK07402 precorrin-6B methylase; Provisional
Probab=44.55 E-value=32 Score=34.31 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhH-HHHHHHhc
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRI-VKNFINFN 475 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~-vk~~~~~~ 475 (733)
.++..++.+.++|+|||++++.+ .+.|+.. +.+.+++.
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~-~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATA-SSLEGLYAISEGLAQL 158 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe-ecHHHHHHHHHHHHhc
Confidence 45788999999999999988775 4676643 66777664
No 288
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=43.12 E-value=40 Score=34.31 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHhccccCCeEEEEeccc
Q psy2380 438 LSIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 438 l~~~l~~~~~~l~~gg~l~visfhS 462 (733)
++.+|+.+.++|+|||++++..|++
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEecC
Confidence 5689999999999999999988886
No 289
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=43.04 E-value=22 Score=37.54 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhccccCCeEEEEeccchhhh
Q psy2380 435 LKNLSIALKIGFKKLNIKGRIVVISFHSLEDR 466 (733)
Q Consensus 435 l~~l~~~l~~~~~~l~~gg~l~visfhSlEdr 466 (733)
+.+.+.+|..+.+.|||||+++++.|..-+-.
T Consensus 158 ~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~ 189 (261)
T PLN02233 158 VVDRLKAMQEMYRVLKPGSRVSILDFNKSTQP 189 (261)
T ss_pred CCCHHHHHHHHHHHcCcCcEEEEEECCCCCcH
Confidence 34678899999999999999999998765543
No 290
>KOG2198|consensus
Probab=43.00 E-value=61 Score=35.87 Aligned_cols=85 Identities=20% Similarity=0.360 Sum_probs=55.4
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCC---CcEEEEEeCCHHHHHHh----cccCCCcEEEEcc---CccchHHH-HHhCC
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGK---KGRLIAIDKDTESVSLG----NKITDSRFSIIHN---CFTELDII-LKKYN 310 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~---~~~l~~~D~D~~a~~~a----~~l~~~r~~~~~~---~f~~~~~~-l~~~~ 310 (733)
+|+..++|++.--||-|..+||.+-+ .|.|+|=|.|+.=+..- +++........+. .|.++.-- ..+..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 78999999999999999999998742 36999999998766553 3443222222211 12222100 00112
Q ss_pred CCcccEEEEcCCCCcc
Q psy2380 311 IKKIDGILFDLGISSN 326 (733)
Q Consensus 311 ~~~~dgil~DLGvss~ 326 (733)
..++|=||.|-=+|..
T Consensus 234 ~~~fDrVLvDVPCS~D 249 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGD 249 (375)
T ss_pred hhhcceeEEecccCCC
Confidence 2479999999988864
No 291
>PF14164 YqzH: YqzH-like protein
Probab=42.93 E-value=67 Score=26.46 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCC--------chHHHHHHHHHHHhccCCCCCHHHHHHHHHhhc
Q psy2380 364 EFNIKKVIQDYGEE--------RFAKKIAKEIVHYRSITPITRTKQLVEIILKSI 410 (733)
Q Consensus 364 ~~~l~~i~~~ygee--------~~~~~ia~~i~~~r~~~~~~tt~~l~~~i~~~~ 410 (733)
+.-+.+-|++||.. ...+.+.+.|..++.+.| -.||.++|++++
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~---~~Dl~eiVeDvV 58 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEP---DEDLHEIVEDVV 58 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHH
Confidence 56788999999854 467889999999887654 348999998875
No 292
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.84 E-value=1.2e+02 Score=29.37 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHhHcCCCcEEeCC------CCCceeEEEEeeCCch--hHHHHhhhCCCcEEEEccCChhHHHHHHHCCC
Q psy2380 640 IITIKDLFHHITRKIGKKPIVIGD------LNKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEISESTVYISRESGV 711 (733)
Q Consensus 640 ~~s~~el~~~lk~~l~~~~v~~~~------~~~~v~rVai~~GsG~--~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~ 711 (733)
.+.+.+.+.++.+.+|++.+-+.+ ....|+.|-+-+|--. +.|-+-.++| |++||-|+.- +..+.+.|.
T Consensus 10 ACPVk~~i~r~A~r~~~~v~~Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-DlVVT~Di~L--A~~ll~kg~ 86 (150)
T COG1671 10 ACPVKDEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-DLVVTADIPL--ASLLLDKGA 86 (150)
T ss_pred CCchHHHHHHHHHHhCCeEEEEeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-CEEEECchHH--HHHHHhcCC
Confidence 566889999999999999766632 1355788877777553 4454445555 9999999863 334567777
Q ss_pred eEEE
Q psy2380 712 AYFA 715 (733)
Q Consensus 712 ~li~ 715 (733)
.+++
T Consensus 87 ~v~~ 90 (150)
T COG1671 87 AVLN 90 (150)
T ss_pred EEEC
Confidence 6664
No 293
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=42.67 E-value=15 Score=36.79 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhccccCCeEEEEeccchhh-hHHHHHHHh
Q psy2380 435 LKNLSIALKIGFKKLNIKGRIVVISFHSLED-RIVKNFINF 474 (733)
Q Consensus 435 l~~l~~~l~~~~~~l~~gg~l~visfhSlEd-r~vk~~~~~ 474 (733)
...++..++.+.+.|+|||++++ ....+|. +-+.+.+++
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 121 SEKLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALEN 160 (198)
T ss_pred cccHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHH
Confidence 34677889999999999999974 6666665 344444544
No 294
>KOG3010|consensus
Probab=42.02 E-value=39 Score=35.28 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=32.8
Q ss_pred CEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc
Q psy2380 245 GIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 287 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l 287 (733)
+..+|.-.|+|--+..+.+.. + +|+|.|..++.++.|++.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k--~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-K--EVIATDVSEAMLKVAKKH 74 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-h--hheeecCCHHHHHHhhcC
Confidence 499999999996666666664 3 699999999999999543
No 295
>KOG1122|consensus
Probab=41.88 E-value=28 Score=39.09 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=42.1
Q ss_pred HhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHH
Q psy2380 233 INWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSL 283 (733)
Q Consensus 233 l~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~ 283 (733)
+..+.| +||..++|++.--||-|..|...+...|-+||.|....-++.
T Consensus 234 v~aL~P---q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~ 281 (460)
T KOG1122|consen 234 VMALDP---QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKS 281 (460)
T ss_pred eeecCC---CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHH
Confidence 345677 899999999999999999999999889999999988776655
No 296
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=41.22 E-value=25 Score=35.24 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhccccCCeEEEEeccchhh
Q psy2380 435 LKNLSIALKIGFKKLNIKGRIVVISFHSLED 465 (733)
Q Consensus 435 l~~l~~~l~~~~~~l~~gg~l~visfhSlEd 465 (733)
-+.+...++.+.++|+|||+++++++.+-||
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~ 140 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLIVAAMDTAD 140 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEecCCC
Confidence 3478899999999999999998888877655
No 297
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=40.94 E-value=48 Score=35.31 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCC-EEEeccCCCccCCcccccChHHHHHHHHHhcC--C-eEEEecCCCCCC
Q psy2380 540 LDLIKTAVDMNAD-AILVHHGYFWKGENSNIVGIKKKRLEQLIINK--I-NLYAYHLPLDMH 597 (733)
Q Consensus 540 ~~vi~~Ai~~~~d-lIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~--I-~vy~~Ht~lD~~ 597 (733)
.+.+++|.+++-. .|+.|||+........ .....+....+.+.. | .+++-||+.|..
T Consensus 203 ~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~-~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~ 263 (296)
T cd00842 203 EDELQEAEQAGEKVWIIGHIPPGVNSYDTL-ENWSERYLQIINRYSDTIAGQFFGHTHRDEF 263 (296)
T ss_pred HHHHHHHHHCCCeEEEEeccCCCCcccccc-hHHHHHHHHHHHHHHHhhheeeecccccceE
Confidence 3567777766544 5899999976532211 122233344444443 4 689999999874
No 298
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=40.55 E-value=15 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhccccCCeEEEEecc
Q psy2380 435 LKNLSIALKIGFKKLNIKGRIVVISFH 461 (733)
Q Consensus 435 l~~l~~~l~~~~~~l~~gg~l~visfh 461 (733)
....+++++.+.++|+|||+++ +++|
T Consensus 98 ~~~~~~~l~~~~~~Lk~gG~li-~~~~ 123 (124)
T TIGR02469 98 GGLLQEILEAIWRRLRPGGRIV-LNAI 123 (124)
T ss_pred chhHHHHHHHHHHHcCCCCEEE-EEec
Confidence 3456789999999999999965 4554
No 299
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=40.38 E-value=44 Score=35.06 Aligned_cols=42 Identities=12% Similarity=-0.056 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHh
Q psy2380 432 NQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 474 (733)
Q Consensus 432 N~El~~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~ 474 (733)
.+-++-++..++.+.++|+|||++++.+-.+-.+. |+..+++
T Consensus 189 ~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~-v~~~l~~ 230 (251)
T TIGR03704 189 ADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL-AVEAFAR 230 (251)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH-HHHHHHH
Confidence 35578899999999999999999998765555444 5555655
No 300
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=40.26 E-value=23 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.2
Q ss_pred CHHHHHHHHHCCCCEEEeccC
Q psy2380 539 SLDLIKTAVDMNADAILVHHG 559 (733)
Q Consensus 539 t~~vi~~Ai~~~~dlIItHHP 559 (733)
++++.+++.+.|+|-|.|-||
T Consensus 9 ~~~~~~~~l~~GVDgI~Td~p 29 (30)
T PF13653_consen 9 KPASWRELLDLGVDGIMTDYP 29 (30)
T ss_dssp SHHHHHHHHHHT-SEEEES-H
T ss_pred CHHHHHHHHHcCCCEeeCCCC
Confidence 378899999999999999987
No 301
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.05 E-value=28 Score=32.45 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccc
Q psy2380 2 AFAVVLGGALQIIIQIPSLIKIGMFP 27 (733)
Q Consensus 2 a~G~~~G~v~qll~l~~~l~r~g~~~ 27 (733)
.+|+.+|.++-.++++|.++|.+++.
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 47888888887777777777766654
No 302
>KOG2899|consensus
Probab=39.59 E-value=50 Score=34.61 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=45.6
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT 288 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~ 288 (733)
..++-++.+.. ......-++|.-+-.|-=|..|.+.+++ .+++|+|+|+.-++.| +.++
T Consensus 44 ~~D~rLk~L~~-~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 44 DSDPRLKVLEK-DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CCChhhhhccc-cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence 34455555543 1123578999999999999999999966 6799999999999999 5553
No 303
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=39.30 E-value=25 Score=35.51 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=33.3
Q ss_pred ccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCC
Q psy2380 241 ERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKD 277 (733)
Q Consensus 241 ~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D 277 (733)
++|+.++||.--|+|--|+-+....+|+|+||++==+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 4889999999999999999999999999999998544
No 304
>PRK13699 putative methylase; Provisional
Probab=38.98 E-value=60 Score=33.55 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=39.2
Q ss_pred hhhhH-HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC
Q psy2380 225 GFLFL-NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT 288 (733)
Q Consensus 225 ~pvll-~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~ 288 (733)
+|+.+ +.+++... ++|++++|.=.|.|- |..-.+++ +-+.+|+|+|++-.+.+ +|+.
T Consensus 148 kP~~l~~~~i~~~s----~~g~~vlDpf~Gsgt-t~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 148 KPVTSLQPLIESFT----HPNAIVLDPFAGSGS-TCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CcHHHHHHHHHHhC----CCCCEEEeCCCCCCH-HHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 35533 44555554 479999999888764 33333444 56899999999999998 5663
No 305
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=38.90 E-value=72 Score=36.09 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred cCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEEc
Q psy2380 252 FGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILFD 320 (733)
Q Consensus 252 ~G~Gghs~~il~~~~~-~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~D 320 (733)
+|.|.-...+.+.+.. +..++.+|.|++.++..+ +. ..+..+.++-.+. +.|++.++.+.|.++.=
T Consensus 237 iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--~~~~~i~gd~~~~-~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 237 VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--PNTLVLHGDGTDQ-ELLEEEGIDEADAFIAL 304 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--CCCeEEECCCCCH-HHHHhcCCccCCEEEEC
Confidence 6888888888888755 578999999999888763 32 3467788877765 45777888889988763
No 306
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=38.60 E-value=30 Score=34.63 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhccccCCeEEEEeccch
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVISFHSL 463 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~visfhSl 463 (733)
+.++..++.+.++|+|||+++++.+.+-
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli~~~~~~ 137 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLIVAAMDT 137 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 3677889999999999999888877543
No 307
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=37.79 E-value=27 Score=37.01 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=21.9
Q ss_pred eEEEecCCCCCCCCCCHHHHHHHHhccCc
Q psy2380 586 NLYAYHLPLDMHPKLGNNAQLAKILNFSC 614 (733)
Q Consensus 586 ~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~ 614 (733)
.--|.|-|||...+.+--...|+.+||..
T Consensus 95 P~VsLHIPWDKved~~~Lke~a~~~GL~f 123 (430)
T COG4952 95 PSVSLHIPWDKVEDPERLKEFASALGLGF 123 (430)
T ss_pred CceeeecChhcccCHHHHHHHHHhcCCCc
Confidence 34688999998755456678888998873
No 308
>PLN02417 dihydrodipicolinate synthase
Probab=37.50 E-value=1.8e+02 Score=30.89 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=65.0
Q ss_pred CHHHHH---HHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCcc
Q psy2380 539 SLDLIK---TAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCT 615 (733)
Q Consensus 539 t~~vi~---~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~ 615 (733)
|.++++ .|.+.|+|.+...-|.+|++.. +...+.++.+.+.. .++-++.|-.... -++..+.+.|- + .
T Consensus 82 t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~----~~i~~~f~~va~~~-pi~lYn~P~~tg~--~l~~~~l~~l~-~-~ 152 (280)
T PLN02417 82 TREAIHATEQGFAVGMHAALHINPYYGKTSQ----EGLIKHFETVLDMG-PTIIYNVPGRTGQ--DIPPEVIFKIA-Q-H 152 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCccCCCCH----HHHHHHHHHHHhhC-CEEEEEChhHhCc--CCCHHHHHHHh-c-C
Confidence 445554 5678999999999888776431 22334455555556 7888777754332 24444444442 1 1
Q ss_pred ccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEE
Q psy2380 616 RRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 695 (733)
Q Consensus 616 ~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~IT 695 (733)
. ..+| +++. + .+ .++.+..+ ..+++.+|....++......|+|-.|+
T Consensus 153 p-------ni~g---------iKds-s-~~--~~~~~~~~-------------~~~~v~~G~d~~~~~~~l~~Ga~G~is 199 (280)
T PLN02417 153 P-------NFAG---------VKEC-T-GN--DRVKQYTE-------------KGILLWSGNDDECHDARWDYGADGVIS 199 (280)
T ss_pred C-------CEEE---------EEeC-C-Cc--HHHHHHhc-------------CCeEEEEcccHHhhHHHHhCCCCEEEe
Confidence 1 1122 2321 1 12 23322111 146788888776666546678888888
Q ss_pred ccC
Q psy2380 696 GEI 698 (733)
Q Consensus 696 Gd~ 698 (733)
|=.
T Consensus 200 ~~~ 202 (280)
T PLN02417 200 VTS 202 (280)
T ss_pred cHH
Confidence 733
No 309
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.40 E-value=7.4e+02 Score=29.06 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=52.5
Q ss_pred cCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 252 FGQGGHSCKILERLGK-KGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 252 ~G~Gghs~~il~~~~~-~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
+|.|-=.+.+.+.+.. +..++.+|.|++..+.+++ ..+..++++-.+ ++.+++.++++.|.++.-.+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~---~g~~~i~GD~~~-~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE---RGIRAVLGNAAN-EEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---CCCeEEEcCCCC-HHHHHhcCccccCEEEEEcC
Confidence 5777777778877643 4589999999998887754 247788888888 66788899999999887655
No 310
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=37.21 E-value=31 Score=31.55 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHhhhHHHHHHHHHHHHhccccCCeEEE
Q psy2380 429 IYINQELKNLSIALKIGFKKLNIKGRIVV 457 (733)
Q Consensus 429 i~vN~El~~l~~~l~~~~~~l~~gg~l~v 457 (733)
|..|.==+-|+.+++...+.|+|||++++
T Consensus 14 IHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 14 IHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 67787778999999999999999999986
No 311
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=36.57 E-value=50 Score=37.67 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHhccccCCeEEEEeccch---h-hhHHHHHHHhc
Q psy2380 439 SIALKIGFKKLNIKGRIVVISFHSL---E-DRIVKNFINFN 475 (733)
Q Consensus 439 ~~~l~~~~~~l~~gg~l~visfhSl---E-dr~vk~~~~~~ 475 (733)
+..|+.+.++|+|||+++. |-+|+ | +..|++++++.
T Consensus 359 ~~iL~~a~~~LkpGG~lvy-stcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 359 LEILESVAQYLKKGGILVY-STCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred HHHHHHHHHHcCCCCEEEE-EcCCCChhhhHHHHHHHHHhC
Confidence 4689999999999999974 43555 5 44777787764
No 312
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=36.20 E-value=6e+02 Score=28.52 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHHHHHhCCHHHHHHHh-hh-------cch---hHhHHHHHHHHHHHHHHH
Q psy2380 97 VTFNTILLPNLSKARIENNTEEYSAIL-DW-------IPI---FAHSGLALSIGLGACLHA 146 (733)
Q Consensus 97 ~ai~tvllP~lS~~~a~~d~~~~~~~l-~~-------ip~---~Gi~GaalAt~is~~v~~ 146 (733)
.++++.+.|.+.+. |=.+++...+ .. +|+ +-++|++.+++++.++.+
T Consensus 70 aa~Gsi~ip~M~k~---GY~~~~aa~l~a~s~~ig~lIPPSi~~IIyg~~a~~SI~~LF~a 127 (379)
T COG1593 70 AALGSILIPEMKKR---GYPAAFAAALTAASGIIGPLIPPSIPFIIYGVAAGVSIGKLFVA 127 (379)
T ss_pred HHHHHHhHHHHHHc---CCCHHHHHHHHHhhccccccCCCCchHHHHHHhccCcHHHHHHH
Confidence 56778888888763 2222222222 22 564 778888888877765443
No 313
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.77 E-value=1e+02 Score=34.26 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCeEEEecCCCCCCCCCCHH---HHHHHHhccCccccccccCccceeeeecccccccCCCCCHHHHHHHH
Q psy2380 574 KKRLEQLIINKINLYAYHLPLDMHPKLGNN---AQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHI 650 (733)
Q Consensus 574 ~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n---~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~l 650 (733)
...+..+.++||.|.+-=-..+- .|.. ..+|+.+|++ .+ ++.+ ......+++.+.+
T Consensus 61 ~~~L~~~~~~gIkvI~NaGg~np---~~~a~~v~eia~e~Gl~-lk------vA~V-----------~gDd~~~~v~~~~ 119 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNAGGLNP---AGCADIVREIARELGLS-LK------VAVV-----------YGDDLKDEVKELL 119 (362)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCH---HHHHHHHHHHHHhcCCC-ee------EEEE-----------ECccchHhHHHHH
Confidence 46788889999999875433332 2333 3445555554 22 2222 1112223333333
Q ss_pred HhHcCCCcEEeCCC--CCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCCh
Q psy2380 651 TRKIGKKPIVIGDL--NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISE 700 (733)
Q Consensus 651 k~~l~~~~v~~~~~--~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~ 700 (733)
++-...+.+.-+.. +...+-+.+.+=-|..-+-+|.+.|||++|||=...
T Consensus 120 ~~g~~~~~l~~~~~l~~~~~~~~~a~aylGa~pI~~AL~~GADIVI~GR~~D 171 (362)
T PF07287_consen 120 AEGETIRPLDTGPPLSEWDDRIVSANAYLGAEPIVEALEAGADIVITGRVAD 171 (362)
T ss_pred hCCCCCccCCCCCCcchhccccceEEEecChHHHHHHHHcCCCEEEeCcccc
Confidence 22111222222211 111123333334555668899999999999998863
No 314
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=35.61 E-value=32 Score=35.03 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHh
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 474 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~ 474 (733)
+..+.|+.+.++|+|||+++++.++.-.-+..+++...
T Consensus 129 ~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 166 (231)
T TIGR02752 129 DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFF 166 (231)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHH
Confidence 45678899999999999999998887655556655443
No 315
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=35.55 E-value=57 Score=34.14 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHh
Q psy2380 432 NQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 474 (733)
Q Consensus 432 N~El~~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~ 474 (733)
++.++..+..++.+.++|+|||++++-.=++ ...-+++.+++
T Consensus 211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~-~~~~~~~~l~~ 252 (275)
T PRK09328 211 EDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD-QGEAVRALLAA 252 (275)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEEECch-HHHHHHHHHHh
Confidence 5678889999999999999999998754222 23346666664
No 316
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=35.43 E-value=79 Score=33.64 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCCh
Q psy2380 641 ITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHH 719 (733)
Q Consensus 641 ~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~ 719 (733)
-.+.+|.+.+.+-+|.+.+|+....+. .|. ..+....+.|.=+++-|-..|.+...|..+|+++..++|.
T Consensus 61 PpI~~F~~dlaeFlg~D~~R~t~GARe-~Kf--------avMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~t 130 (382)
T COG1103 61 PPIKDFLEDLAEFLGMDEVRVTAGARE-AKF--------AVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNT 130 (382)
T ss_pred CcHHHHHHHHHHHhCCceeeecccchh-hHH--------HHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCC
Confidence 378999999999999998887432211 111 1244445566556666666777788888889999998874
No 317
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=35.16 E-value=22 Score=30.94 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhccccCCeE
Q psy2380 436 KNLSIALKIGFKKLNIKGRI 455 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l 455 (733)
+.++..|+++.++|+|||++
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 67889999999999999986
No 318
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=35.08 E-value=35 Score=35.63 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCEEEeccCCCccCCc
Q psy2380 541 DLIKTAVDMNADAILVHHGYFWKGEN 566 (733)
Q Consensus 541 ~vi~~Ai~~~~dlIItHHP~~f~~~~ 566 (733)
+..+++++.|||+||-|||=...|..
T Consensus 207 ~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 207 ELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCCcccceE
Confidence 44555678999999999997776653
No 319
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=35.06 E-value=4.8e+02 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2380 130 AHSGLALSIGLGACLHASFLYWYLRHKRI 158 (733)
Q Consensus 130 Gi~GaalAt~is~~v~~iL~~~~l~r~i~ 158 (733)
+..+.+++..++.++..++.++.++|+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T PF01943_consen 165 SLWGFLLGLVISSLVSLIISLFYLRRKLR 193 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37888888899999998888888887653
No 320
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=34.88 E-value=1.5e+02 Score=33.75 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=92.3
Q ss_pred HHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCCCCccccCCCCCC-cccCC
Q psy2380 261 ILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRG-FSFLL 339 (733)
Q Consensus 261 il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLGvss~q~~~~~rG-fs~~~ 339 (733)
++...+-.|-|+.+|==....+...+ .--+.||.+|.+++....-+++-|+.+=+|----=++|+.|| +||
T Consensus 232 ~lr~aGy~GLlI~lDE~e~l~kl~~~------~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY-- 303 (416)
T PF10923_consen 232 FLRDAGYKGLLILLDELENLYKLRND------QAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSY-- 303 (416)
T ss_pred HHHHcCCCceEEEEechHHHHhcCCh------HHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCcccccccc--
Confidence 34456778999999954443332211 113467888888887654456788888888877777799999 777
Q ss_pred CCCccccCCCCC-------CC-CHHHHHhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhc-cCCCCCHHHHHHHHHhhc
Q psy2380 340 DGPLDMRMDITR-------GI-SASKWLANATEFNIKKVIQDYGEERFAKKIAKEIVHYRS-ITPITRTKQLVEIILKSI 410 (733)
Q Consensus 340 ~~pLDmRm~~~~-------~~-~a~~~~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~-~~~~~tt~~l~~~i~~~~ 410 (733)
.||.+|+.... .. .+.=-|..++.+||..+..+- +.|-..-. ..+.-+-.++.+.++.+.
T Consensus 304 -~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~kl----------r~i~a~~~~~~~~v~d~~l~~~~~~~~ 372 (416)
T PF10923_consen 304 -EALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLEKL----------RDIYAEAYGYESRVDDEELKAFAQHVA 372 (416)
T ss_pred -HHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHHHH----------HHHHHhhCCCCCCCCHHHHHHHHHHHH
Confidence 78999987653 11 122235677888877665541 11111111 123445567777777776
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhhHHHHH
Q psy2380 411 RGNKRYKNPATRTFQAIRIYINQELKNLS 439 (733)
Q Consensus 411 ~~~~~~~~~~~~~FqalRi~vN~El~~l~ 439 (733)
.+---..+.+-|.| ||=+| +-|+.++
T Consensus 373 ~r~G~~~~~tPR~~--ik~fv-~~Ld~~~ 398 (416)
T PF10923_consen 373 GRLGGDVFVTPREF--IKDFV-DVLDILE 398 (416)
T ss_pred hccCcccccCHHHH--HHHHH-HHHHHHH
Confidence 53111234555555 55555 4444433
No 321
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=34.72 E-value=2.2e+02 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=22.7
Q ss_pred EEEEeeCCchhHHHHhhhCCCcEEEEc
Q psy2380 670 EIGWCTGAAQNLLTDAINEGVTAYISG 696 (733)
Q Consensus 670 rVai~~GsG~~~i~~a~~~g~D~~ITG 696 (733)
.|.+=+|-..+-++.+.++|||+++.|
T Consensus 181 ~IeVDGGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 181 LISIDGSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred eEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 477778888788888889999999998
No 322
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.21 E-value=4.9e+02 Score=27.61 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCcccccc
Q psy2380 540 LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFS 619 (733)
Q Consensus 540 ~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~ 619 (733)
+.-+++|.+.|+|-+|.|-=+ + +...+....+.++|+...-+=+|=- .-+.+.+......--.+.
T Consensus 109 e~F~~~~~~aGvdgviipDLP-~--------ee~~~~~~~~~~~gi~~I~lv~PtT------~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPDLP-Y--------EESDYLISVCNLYNIELILLIAPTS------SKSRIQKIARAAPGCIYL 173 (263)
T ss_pred HHHHHHHHHcCCeEEEecCCC-H--------HHHHHHHHHHHHcCCCEEEEECCCC------CHHHHHHHHHhCCCcEEE
Confidence 457999999999999998522 1 1235677888999987655433221 122333333222100000
Q ss_pred ccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCc---hhHHHHhhhCCCcEEEEc
Q psy2380 620 KNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA---QNLLTDAINEGVTAYISG 696 (733)
Q Consensus 620 ~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG---~~~i~~a~~~g~D~~ITG 696 (733)
-...|.-|. .=.+ +..+.++++++|+..+.| |+ -|.| .+-++++.+.|||-+|.|
T Consensus 174 vS~~GvTG~-----~~~~--~~~~~~~i~~ir~~t~~P-------------i~--vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 174 VSTTGVTGL-----KTEL--DKKLKKLIETIKKMTNKP-------------II--LGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred EcCCCCCCC-----Cccc--cHHHHHHHHHHHHhcCCC-------------EE--EECCcCCHHHHHHHHhcCCCEEEEC
Confidence 011243343 0002 235788888888755433 22 2444 234666677788888888
Q ss_pred c
Q psy2380 697 E 697 (733)
Q Consensus 697 d 697 (733)
-
T Consensus 232 S 232 (263)
T CHL00200 232 S 232 (263)
T ss_pred H
Confidence 4
No 323
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.87 E-value=2.2e+02 Score=28.79 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy2380 40 IAVRRILKKMGPSVF 54 (733)
Q Consensus 40 ~~lk~ll~l~iPiil 54 (733)
....+++.-.+|-++
T Consensus 25 ~~~e~~L~eil~~Ll 39 (206)
T PF06570_consen 25 EEIEELLEEILPHLL 39 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666554
No 324
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=33.65 E-value=63 Score=33.96 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=40.6
Q ss_pred HHcCCCcEEEEEeCCHHHHHHhcccC-------------CCcEEEEccCccchHHHHHhCCC-CcccEEEEcCC
Q psy2380 263 ERLGKKGRLIAIDKDTESVSLGNKIT-------------DSRFSIIHNCFTELDIILKKYNI-KKIDGILFDLG 322 (733)
Q Consensus 263 ~~~~~~~~l~~~D~D~~a~~~a~~l~-------------~~r~~~~~~~f~~~~~~l~~~~~-~~~dgil~DLG 322 (733)
++.+++.+|+|+|+|++..+.|.++. +-.+.++...-+.+.+++++..- -+.+.++.|.|
T Consensus 6 ~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 6 RKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred HhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 34467899999999999999984331 23577888888888888877632 35689999987
No 325
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.56 E-value=1.3e+02 Score=30.48 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=50.9
Q ss_pred ccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchHHH---HHhC--CCCcccEEEEcC
Q psy2380 251 TFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELDII---LKKY--NIKKIDGILFDL 321 (733)
Q Consensus 251 T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil~DL 321 (733)
|=|.||-..++.+++ ..+.+|+.+||+++..+.. +.+. +.++.++.....+.+++ +++. ..+.+|+++..-
T Consensus 13 tG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 92 (239)
T PRK07666 13 TGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNA 92 (239)
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Confidence 557777777777654 3567999999998876654 3343 45788888877765443 3321 124799999988
Q ss_pred CCCc
Q psy2380 322 GISS 325 (733)
Q Consensus 322 Gvss 325 (733)
|+..
T Consensus 93 g~~~ 96 (239)
T PRK07666 93 GISK 96 (239)
T ss_pred cccc
Confidence 8753
No 326
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=33.53 E-value=2e+02 Score=30.90 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHH-hcCCeEEEec
Q psy2380 541 DLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLI-INKINLYAYH 591 (733)
Q Consensus 541 ~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~-~~~I~vy~~H 591 (733)
+..+.|.+.|+|-+...-|.+|++.+ .-..+.++.+. ..++.+|-+|
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~----~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQ----EGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHhccCCCEEEEe
Confidence 34445567899999998888776432 11122233332 2456666666
No 327
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=33.18 E-value=9.2e+02 Score=28.88 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=49.3
Q ss_pred CEEEEEccCCChhHHH-HHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcC
Q psy2380 245 GIYIDATFGQGGHSCK-ILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~-il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DL 321 (733)
+.+|=|-+|.=|+..+ .|++ .+-.++.+|.|++.++.+++ ..+..++++-.+.+ .|++.|+++.|.++.-.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~---~g~~v~~GDat~~~-~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK---FGMKVFYGDATRMD-LLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh---cCCeEEEEeCCCHH-HHHhcCCCcCCEEEEEe
Confidence 3455465666555432 3433 24579999999999888754 24677888888755 68888999999988754
No 328
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=32.54 E-value=1.3e+02 Score=31.92 Aligned_cols=78 Identities=18% Similarity=0.400 Sum_probs=52.2
Q ss_pred hHHHHHhhhhcccccCC-CEEEEEccC--CChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcc-cC-CC--cEEEEccCcc
Q psy2380 228 FLNEAINWLNIENERIN-GIYIDATFG--QGGHSCKILERLGKKGRLIAIDKDTESVSLGNK-IT-DS--RFSIIHNCFT 300 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~-~~~vD~T~G--~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~-l~-~~--r~~~~~~~f~ 300 (733)
.+..+++.+.. +-| .-|+|.=-| .-|++-++.++..|+++|+-+|.||-+++.++. |. .+ +..++++...
T Consensus 55 Fl~RaVr~la~---~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r 131 (267)
T PF04672_consen 55 FLRRAVRYLAE---EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLR 131 (267)
T ss_dssp HHHHHHHHHHC---TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT
T ss_pred HHHHHHHHHHH---hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCC
Confidence 44556666654 212 479998655 347888899999999999999999999999864 44 33 4999999999
Q ss_pred chHHHHHh
Q psy2380 301 ELDIILKK 308 (733)
Q Consensus 301 ~~~~~l~~ 308 (733)
+-+.+|..
T Consensus 132 ~p~~iL~~ 139 (267)
T PF04672_consen 132 DPEAILAH 139 (267)
T ss_dssp -HHHHHCS
T ss_pred CHHHHhcC
Confidence 99999873
No 329
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.50 E-value=9.2e+02 Score=28.70 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=48.2
Q ss_pred EEEEccCCChhHH-HHHHHcCCCcEEEEEeCCHHHHHHhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCC
Q psy2380 247 YIDATFGQGGHSC-KILERLGKKGRLIAIDKDTESVSLGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 247 ~vD~T~G~Gghs~-~il~~~~~~~~l~~~D~D~~a~~~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLG 322 (733)
+|=|=+|.=|... ..|++ .+-.++.+|.|++.++.+++. ....+.++-.+. +.|++.|+++.|.++.=.+
T Consensus 403 vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~---g~~v~~GDat~~-~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 403 VIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY---GYKVYYGDATQL-ELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred EEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC---CCeEEEeeCCCH-HHHHhcCCccCCEEEEEeC
Confidence 4435555555543 23443 345799999999999887542 366777877774 4688889999999887544
No 330
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.49 E-value=2.4e+02 Score=29.73 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEEeccc
Q psy2380 383 IAKEIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 383 ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~~~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~visfhS 462 (733)
+++.+.++| |. -.-|.++........+ .....+.++++ .+-+...+.|.+.+ .|+++..+| +
T Consensus 34 ~~~~l~~~~---~~--Ma~~~n~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~A~~~i-~~dvILT~s-~- 95 (253)
T PRK06372 34 IIKDLKNYF---FG--MGLVRNVCDSIISGPN---LRPKNLKLGIE-------KHEKMAIEHAKPLF-NDSVIGTIS-S- 95 (253)
T ss_pred HHHHHHHhC---cc--hHHHHHHHHHHHccCc---CCHHHHHHHHH-------HHHHHHHHHHHhhc-CCCEEEEeC-C-
Confidence 777777776 21 2344454444443211 12224444444 56666777788887 666555555 2
Q ss_pred hhhhHHHHHHHhcC
Q psy2380 463 LEDRIVKNFINFNT 476 (733)
Q Consensus 463 lEdr~vk~~~~~~~ 476 (733)
-+.|++|+++..
T Consensus 96 --S~~v~~~l~~~~ 107 (253)
T PRK06372 96 --SQVLKAFISSSE 107 (253)
T ss_pred --cHHHHHHHHhcC
Confidence 467888886643
No 331
>PRK06940 short chain dehydrogenase; Provisional
Probab=32.45 E-value=1.1e+02 Score=32.00 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchH---HHHHhC-CCCcccEEEEcCCCC
Q psy2380 253 GQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELD---IILKKY-NIKKIDGILFDLGIS 324 (733)
Q Consensus 253 G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~---~~l~~~-~~~~~dgil~DLGvs 324 (733)
|.||=-+++.+.+..+.+|+.+|++++..+.. +++. +.++.++..+.++-+ +.+++. ..+++|+++.+=|+.
T Consensus 9 Ga~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 9 GAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred CCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 44677777777776678999999998876654 3443 346777877776643 333321 124799999999974
No 332
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.31 E-value=4.2e+02 Score=30.09 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=91.2
Q ss_pred EEeCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCc
Q psy2380 535 GVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSC 614 (733)
Q Consensus 535 ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~ 614 (733)
+-+.|.+-++++-+..+|+++++++-... ...+.+ -.+.||..+....|+......-.=..+++.+|.+.
T Consensus 207 ~~g~~~~~i~~~~~A~lniv~~~~~~~g~--------~~A~~L--~e~~giP~~~~~~P~G~~~t~~~l~~l~~~~g~~~ 276 (429)
T cd03466 207 SGGTPISEIKGMGGAKATIELGMFVDHGL--------SAGSYL--EEEFGIPNYRLPLPIGLRATDEFMSLLSKLTGKPI 276 (429)
T ss_pred CCCCCHHHHHhhccCcEEEEEccCccchH--------HHHHHH--HHHHCCCeeecCCCcChHHHHHHHHHHHHHHCCCc
Confidence 45668888999999889999886532110 011222 24679997777777665432112234455666543
Q ss_pred cccccc--------------cCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeC-CC-----CCc----e--
Q psy2380 615 TRRFSK--------------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DL-----NKK----I-- 668 (733)
Q Consensus 615 ~~~~~~--------------~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~-~~-----~~~----v-- 668 (733)
.+.+.. .-.|+- .+-.-++...-.+++.+.+ +|...+.+. +. .+. .
T Consensus 277 ~~~i~~~~~~~~~~~~d~~~~l~gkr-------v~v~g~~~~~~~l~~~L~e-lG~~~~~v~~~~~~~~~~~~l~~~~~~ 348 (429)
T cd03466 277 PEKYTRERGRLLDAMIDAHKYNFGRK-------AAIYGEPDFVVAITRFVLE-NGMVPVLIATGSESKKLKEKLEEDLKE 348 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCE-------EEEEcCHHHHHHHHHHHHH-CCCEEEEEEeCCCChHHHHHHHHHHHh
Confidence 221110 001211 1112345556677777764 787764442 11 111 1
Q ss_pred --eEEEEeeC-CchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeC
Q psy2380 669 --YEIGWCTG-AAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAG 717 (733)
Q Consensus 669 --~rVai~~G-sG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~g 717 (733)
..+.++.. ...++.+.+.+.++|++|.+.. ....|.+.|+.++.+|
T Consensus 349 ~~~~~~v~~~~d~~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 349 YVEKCVILDGADFFDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCceEEEeCCCHHHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 23444443 4445555567778999999864 4567788999999887
No 333
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=31.15 E-value=32 Score=31.92 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=31.3
Q ss_pred HhccCHHHHHHHHHHcCCCchHHHHHHHHHHHhcc-CCCCCHHHHHH
Q psy2380 359 LANATEFNIKKVIQDYGEERFAKKIAKEIVHYRSI-TPITRTKQLVE 404 (733)
Q Consensus 359 ~n~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~-~~~~tt~~l~~ 404 (733)
+|+.+.++|..+- - -..+.|++|++.|+. +++.+..||.+
T Consensus 62 iNtA~~~eL~~lp-G-----IG~~~A~~Ii~~R~~~g~f~s~eeL~~ 102 (120)
T TIGR01259 62 INAASLEELQALP-G-----IGPAKAKAIIEYREENGAFKSVDDLTK 102 (120)
T ss_pred CCcCCHHHHhcCC-C-----CCHHHHHHHHHHHHhcCCcCCHHHHHc
Confidence 6889999998752 2 335788999999984 68999888854
No 334
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.06 E-value=51 Score=32.83 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHh
Q psy2380 380 AKKIAKEIVHYRSITPITRTKQLVEIILK 408 (733)
Q Consensus 380 ~~~ia~~i~~~r~~~~~~tt~~l~~~i~~ 408 (733)
.++...+|++.|+++||++-.|+.+.|..
T Consensus 139 GkK~m~~ILeERkkkpFeSFeDi~~Rv~~ 167 (202)
T COG1491 139 GKKTMWAILEERKKKPFESFEDIKERVKG 167 (202)
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHhcC
Confidence 46788999999999999999998887654
No 335
>PRK08263 short chain dehydrogenase; Provisional
Probab=30.92 E-value=1.8e+02 Score=30.25 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=48.6
Q ss_pred ccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHHH---HHhC--CCCcccEEEEcCCC
Q psy2380 251 TFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDII---LKKY--NIKKIDGILFDLGI 323 (733)
Q Consensus 251 T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil~DLGv 323 (733)
|=|.||--..+.+++ ..+.+|+++|++++.++... ++ .+++..++.++.+.+++ ++.. ....+|+++..-|+
T Consensus 9 tGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 9 TGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGY 87 (275)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 445666666666655 34578999999998876542 33 35677777777665443 3221 12478999999998
Q ss_pred Cc
Q psy2380 324 SS 325 (733)
Q Consensus 324 ss 325 (733)
..
T Consensus 88 ~~ 89 (275)
T PRK08263 88 GL 89 (275)
T ss_pred cc
Confidence 64
No 336
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=30.41 E-value=17 Score=36.47 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=28.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhccccCCeEEEEeccchhh
Q psy2380 428 RIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLED 465 (733)
Q Consensus 428 Ri~vN~El~~l~~~l~~~~~~l~~gg~l~visfhSlEd 465 (733)
+|+++.= .+++..|+.+.+.|+||||+++ .+=.||-
T Consensus 105 aiFIGGg-~~i~~ile~~~~~l~~ggrlV~-naitlE~ 140 (187)
T COG2242 105 AIFIGGG-GNIEEILEAAWERLKPGGRLVA-NAITLET 140 (187)
T ss_pred EEEECCC-CCHHHHHHHHHHHcCcCCeEEE-EeecHHH
Confidence 4677777 8999999999999999999864 4555553
No 337
>COG2245 Predicted membrane protein [Function unknown]
Probab=30.22 E-value=5.6e+02 Score=25.46 Aligned_cols=35 Identities=6% Similarity=-0.113 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Q psy2380 143 CLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLV 180 (733)
Q Consensus 143 ~v~~iL~~~~l~r~i~~~~~~~~~~~~~k~~lAs~iM~ 180 (733)
++-..+..+.+++..|- ++.++...+..+++++-.
T Consensus 35 ~VLvlval~~iS~~~ge---~~IF~~yl~~~v~~l~~~ 69 (182)
T COG2245 35 LVLVLVALYMISKQVGE---DRIFNNYLIAVVLGLVGF 69 (182)
T ss_pred HHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHHHH
Confidence 34445566677777664 566677777766665533
No 338
>PRK14967 putative methyltransferase; Provisional
Probab=30.03 E-value=84 Score=32.02 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccccCCeEEEE
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVI 458 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~vi 458 (733)
.-++.+++++.++|+|||+++++
T Consensus 136 ~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 136 AVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 45789999999999999998875
No 339
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=29.78 E-value=79 Score=36.10 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHhccccCCeEEEEe--ccchhh-hHHHHHHHhc
Q psy2380 440 IALKIGFKKLNIKGRIVVIS--FHSLED-RIVKNFINFN 475 (733)
Q Consensus 440 ~~l~~~~~~l~~gg~l~vis--fhSlEd-r~vk~~~~~~ 475 (733)
..|..+.++|+|||+++.-| ++.-|. ..|++|++.+
T Consensus 358 ~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 58999999999999998765 556674 4566777654
No 340
>PRK12939 short chain dehydrogenase; Provisional
Probab=29.78 E-value=2.2e+02 Score=28.74 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=49.4
Q ss_pred EccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchHHH---HHhC--CCCcccEEEEc
Q psy2380 250 ATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELDII---LKKY--NIKKIDGILFD 320 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil~D 320 (733)
.|=|.||=..++.+.+. .+.+|+++|++++..+.. +++. ..++.++..+..+.+++ +++. ...++|+++..
T Consensus 12 ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ 91 (250)
T PRK12939 12 VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNN 91 (250)
T ss_pred EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 45555555555555442 356899999998877654 4443 35788888888775543 2221 12479999999
Q ss_pred CCCCcc
Q psy2380 321 LGISSN 326 (733)
Q Consensus 321 LGvss~ 326 (733)
-|++..
T Consensus 92 ag~~~~ 97 (250)
T PRK12939 92 AGITNS 97 (250)
T ss_pred CCCCCC
Confidence 998643
No 341
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=29.48 E-value=3.8e+02 Score=31.66 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=42.6
Q ss_pred hhhHHHH----HHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhhHHHHH
Q psy2380 163 AGWGVFF----IRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLI-----LLFCGITYFLALRIMGFLFLNEAI 233 (733)
Q Consensus 163 ~~~~~~~----~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~l~i~-----v~iG~ivY~~ll~ll~pvll~Evl 233 (733)
+.+++.+ ..|++..++|..+.+......++.+ ..+..+...+.. ..+|+.+|.++-.++.|.=++.++
T Consensus 166 P~~L~ff~G~RfVPilt~lv~i~l~~i~~~iwP~i~---~gI~~~~~~i~~~g~~~~~~g~fiyG~l~rlLIp~GLHh~l 242 (548)
T TIGR02003 166 PEALAFFNGKRFVPFVVILRSIFTAIILSLLWPFIQ---SGINEFGMWIAASKDSAPILAPFLYGTLERLLLPFGLHHML 242 (548)
T ss_pred cHHHHHccCCcchHhHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccchhh
Confidence 4566777 7788888888777766554444331 112222222221 247889999999988887666665
Q ss_pred h
Q psy2380 234 N 234 (733)
Q Consensus 234 ~ 234 (733)
.
T Consensus 243 ~ 243 (548)
T TIGR02003 243 T 243 (548)
T ss_pred h
Confidence 5
No 342
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.17 E-value=2.3e+02 Score=30.40 Aligned_cols=118 Identities=14% Similarity=0.033 Sum_probs=66.3
Q ss_pred cChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeeccccccc-CCCCCHHHHHH
Q psy2380 570 VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNF-KKIITIKDLFH 648 (733)
Q Consensus 570 ~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l-~~~~s~~el~~ 648 (733)
.+...+.-..|.++|+++...++..+.. .|. +.+. ..++ + |.+.++++|.+
T Consensus 17 pGIVa~Vt~~La~~g~NI~d~s~~~~~~--~g~-------F~m~-----------i~v~--------~~~~~~~~~~L~~ 68 (286)
T PRK06027 17 PGIVAAVSNFLYEHGGNIVDADQFVDPE--TGR-------FFMR-----------VEFE--------GDGLIFNLETLRA 68 (286)
T ss_pred CcHHHHHHHHHHHCCCCEEEceeEEcCC--CCe-------EEEE-----------EEEE--------eCCCCCCHHHHHH
Confidence 3567888999999999999999888542 231 1100 0112 3 44556666655
Q ss_pred H---HHhHcCCCcEEeCCCCCceeEEEE-eeCCchh---HHHHhhhC--CCc--EEEEccCChhHHHHHHHCCCeEEEeC
Q psy2380 649 H---ITRKIGKKPIVIGDLNKKIYEIGW-CTGAAQN---LLTDAINE--GVT--AYISGEISESTVYISRESGVAYFAAG 717 (733)
Q Consensus 649 ~---lk~~l~~~~v~~~~~~~~v~rVai-~~GsG~~---~i~~a~~~--g~D--~~ITGd~~~h~~~~A~~~g~~li~~g 717 (733)
. +.+.++++. .+-+..++ .|||+ ++|.|+. +++..... +++ ++||- +......|.+.|+.+....
T Consensus 69 ~L~~l~~~l~l~i-~l~~~~~~-~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn--~~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 69 DFAALAEEFEMDW-RLLDSAER-KRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISN--HDDLRSLVERFGIPFHHVP 144 (286)
T ss_pred HHHHHHHHhCCEE-EEcccccC-cEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEc--ChhHHHHHHHhCCCEEEec
Confidence 4 445556542 23222333 46666 6788864 34433332 333 34442 2222334899999998877
Q ss_pred Ch
Q psy2380 718 HH 719 (733)
Q Consensus 718 H~ 719 (733)
|-
T Consensus 145 ~~ 146 (286)
T PRK06027 145 VT 146 (286)
T ss_pred cC
Confidence 64
No 343
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.74 E-value=4.6e+02 Score=27.85 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred CHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEecCCC
Q psy2380 539 SLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPL 594 (733)
Q Consensus 539 t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~l 594 (733)
+.+..++|.+.|+|-+....|.+|.+.. .....+....+.+ ++.++-+|-|-
T Consensus 80 ai~~a~~a~~~Gad~v~v~~P~y~~~~~---~~~i~~yf~~v~~-~lpv~iYn~P~ 131 (279)
T cd00953 80 SIELARAAKSFGIYAIASLPPYYFPGIP---EEWLIKYFTDISS-PYPTFIYNYPK 131 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCC---HHHHHHHHHHHHh-cCCEEEEeCcc
Confidence 3344555567999999999999886421 1223355556666 89999988664
No 344
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.65 E-value=4.5e+02 Score=26.83 Aligned_cols=118 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred CHHH-HHHHHHCCCCEEEeccC---CCccCCcccccChHHHHHHHHHhcCC-eEEEecCCCCCCCCCCHHHHHHHHhccC
Q psy2380 539 SLDL-IKTAVDMNADAILVHHG---YFWKGENSNIVGIKKKRLEQLIINKI-NLYAYHLPLDMHPKLGNNAQLAKILNFS 613 (733)
Q Consensus 539 t~~v-i~~Ai~~~~dlIItHHP---~~f~~~~~~~~~~~~~~~~~l~~~~I-~vy~~Ht~lD~~~~~G~n~~La~~Lgl~ 613 (733)
|.++ ++.+.+.|+|.+|.=|. +.|... .+++..+.++|+ .+++.|+ .+.+.+...+.
T Consensus 73 tg~~~~~~l~~~G~~~vii~~ser~~~~~e~--------~~~v~~a~~~Gl~~I~~v~~----------~~~~~~~~~~~ 134 (223)
T PRK04302 73 TGHILPEAVKDAGAVGTLINHSERRLTLADI--------EAVVERAKKLGLESVVCVNN----------PETSAAAAALG 134 (223)
T ss_pred hhhhHHHHHHHcCCCEEEEeccccccCHHHH--------HHHHHHHHHCCCeEEEEcCC----------HHHHHHHhcCC
Q ss_pred c----cccccccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCc---hhHHHHhh
Q psy2380 614 C----TRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA---QNLLTDAI 686 (733)
Q Consensus 614 ~----~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG---~~~i~~a~ 686 (733)
. ++|..-.|.|.-.. -..+..++++.+.+++. ...+-++.|+| .+..+.+.
T Consensus 135 ~~~I~~~p~~~igt~~~~~--------~~~~~~i~~~~~~ir~~--------------~~~~pvi~GggI~~~e~~~~~~ 192 (223)
T PRK04302 135 PDYVAVEPPELIGTGIPVS--------KAKPEVVEDAVEAVKKV--------------NPDVKVLCGAGISTGEDVKAAL 192 (223)
T ss_pred CCEEEEeCccccccCCCCC--------cCCHHHHHHHHHHHHhc--------------cCCCEEEEECCCCCHHHHHHHH
Q ss_pred hCCCcEEEEc
Q psy2380 687 NEGVTAYISG 696 (733)
Q Consensus 687 ~~g~D~~ITG 696 (733)
+.|+|-++-|
T Consensus 193 ~~gadGvlVG 202 (223)
T PRK04302 193 ELGADGVLLA 202 (223)
T ss_pred cCCCCEEEEe
No 345
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.61 E-value=1.8e+02 Score=29.93 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=57.0
Q ss_pred hHHHHHhhhhcccccCCCEEEEEccCCChh--HHHHHHHc-CCCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCc
Q psy2380 228 FLNEAINWLNIENERINGIYIDATFGQGGH--SCKILERL-GKKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCF 299 (733)
Q Consensus 228 ll~Evl~~L~~~~~~~~~~~vD~T~G~Ggh--s~~il~~~-~~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f 299 (733)
-..|.+..+.-+ .+.+..|+++-++|.- |.++.-.. .-+|+++++--|++.+... +.|. .+.++|+.++=
T Consensus 28 ~~aEfISAlAAG--~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 28 GVAEFISALAAG--WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CHHHHHHHHhcc--ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 456788877531 4568999998887664 44444322 3589999999999987665 4453 24467766531
Q ss_pred cchHHHHHhCCCCcccEEEEcCC
Q psy2380 300 TELDIILKKYNIKKIDGILFDLG 322 (733)
Q Consensus 300 ~~~~~~l~~~~~~~~dgil~DLG 322 (733)
-.++++.+ ..+|.+++|.-
T Consensus 106 --~e~~~~~~--~~iDF~vVDc~ 124 (218)
T PF07279_consen 106 --PEEVMPGL--KGIDFVVVDCK 124 (218)
T ss_pred --HHHHHhhc--cCCCEEEEeCC
Confidence 22344433 46888888875
No 346
>PRK06197 short chain dehydrogenase; Provisional
Probab=28.47 E-value=2.6e+02 Score=29.64 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=53.1
Q ss_pred CCEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHH---HHhC--CCC
Q psy2380 244 NGIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDII---LKKY--NIK 312 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~---l~~~--~~~ 312 (733)
+++++ .|=|.||=-.++.+++. .+.+|+.++|+++..+.+ +.+. +.++.++..+.++.+++ +++. ...
T Consensus 16 ~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 44444 67777776666666543 356899999998876654 3332 35788888887776543 3322 134
Q ss_pred cccEEEEcCCCCc
Q psy2380 313 KIDGILFDLGISS 325 (733)
Q Consensus 313 ~~dgil~DLGvss 325 (733)
++|.++.+-|+.+
T Consensus 95 ~iD~li~nAg~~~ 107 (306)
T PRK06197 95 RIDLLINNAGVMY 107 (306)
T ss_pred CCCEEEECCcccc
Confidence 7999999998754
No 347
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=28.35 E-value=76 Score=31.98 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=38.9
Q ss_pred CCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccC
Q psy2380 244 NGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNC 298 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~ 298 (733)
.+++-|.-.|.|=-|..-.++ --||||+++||.--..| ++|. .++++.+.+.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gD 88 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGD 88 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecc
Confidence 478889888887666555444 35899999999999998 5664 4678887764
No 348
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=28.33 E-value=3.4e+02 Score=29.01 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeecccccccCC-CCCHHHHHHH
Q psy2380 571 GIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKK-IITIKDLFHH 649 (733)
Q Consensus 571 ~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~-~~s~~el~~~ 649 (733)
+...+.-..|.++|+++--.....|.. .|. | -+=...+ +++ +.+.++|.+.
T Consensus 12 GIVA~Vt~~La~~g~NI~d~sq~~~~~--~~~---------------F---~mr~~v~--------~~~~~~~~~~l~~~ 63 (280)
T TIGR00655 12 GLVAAISTFIAKHGANIISNDQHTDPE--TGR---------------F---FMRVEFQ--------LEGFRLEESSLLAA 63 (280)
T ss_pred ChHHHHHHHHHHCCCCEEeeeEEEcCC--CCe---------------E---EEEEEEE--------eCCCCCCHHHHHHH
Confidence 456777778888888887766665521 111 0 0111112 443 3567777655
Q ss_pred HH----hHcCCCcEEeCCCCCceeEEEE-eeCCchh---HHHHhhhCCCcEEEEccCChh-H-HHHHHHCCCeEEEeCC
Q psy2380 650 IT----RKIGKKPIVIGDLNKKIYEIGW-CTGAAQN---LLTDAINEGVTAYISGEISES-T-VYISRESGVAYFAAGH 718 (733)
Q Consensus 650 lk----~~l~~~~v~~~~~~~~v~rVai-~~GsG~~---~i~~a~~~g~D~~ITGd~~~h-~-~~~A~~~g~~li~~gH 718 (733)
++ +.++++ +++.+.++ ..|||| ++|+|.. +++.......++=|+.=++-| + ...|.+.|+......|
T Consensus 64 l~~~~~~~~~l~-i~l~~~~~-~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 64 FKSALAEKFEMT-WELILADK-LKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred HHHHHHHHhCCE-EEEecCCC-CcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCC
Confidence 44 456654 33333333 346776 6899874 344433322233333333322 2 2358899999988887
No 349
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=28.22 E-value=75 Score=36.05 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=27.1
Q ss_pred HHHHHHHHhccccCCeEEEE--eccchhhhH-HHHHHHhc
Q psy2380 439 SIALKIGFKKLNIKGRIVVI--SFHSLEDRI-VKNFINFN 475 (733)
Q Consensus 439 ~~~l~~~~~~l~~gg~l~vi--sfhSlEdr~-vk~~~~~~ 475 (733)
++.|+.+.++|||||+++.. |++.-|..- |+.|.+++
T Consensus 348 ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 67889999999999999876 455556655 55566554
No 350
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=28.15 E-value=65 Score=35.50 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhccccCCeEEEEeccch-hhhHHHHHHHhc
Q psy2380 434 ELKNLSIALKIGFKKLNIKGRIVVISFHSL-EDRIVKNFINFN 475 (733)
Q Consensus 434 El~~l~~~l~~~~~~l~~gg~l~visfhSl-Edr~vk~~~~~~ 475 (733)
..+..++++..+.+.|+|||++.++.-.-| -..++++.|...
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~ 320 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH 320 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe
Confidence 356789999999999999999988764433 224666667554
No 351
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=27.84 E-value=61 Score=28.22 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhccCCCCCHHHHHHHH
Q psy2380 379 FAKKIAKEIVHYRSITPITRTKQLVEII 406 (733)
Q Consensus 379 ~~~~ia~~i~~~r~~~~~~tt~~l~~~i 406 (733)
-....|+.|+++|+.+|+++-.|+.+-+
T Consensus 35 lg~~~a~~I~~~R~~g~f~s~~df~~R~ 62 (90)
T PF14579_consen 35 LGEEVAEKIVEERENGPFKSLEDFIQRL 62 (90)
T ss_dssp S-HHHHHHHHHHHHCSS-SSHHHHHHHS
T ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHH
Confidence 3567899999999999999888887654
No 352
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.79 E-value=1.9e+02 Score=31.17 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=65.4
Q ss_pred cChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCccccccccCccceeeeecccccccCCCCCHHHHHHH
Q psy2380 570 VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHH 649 (733)
Q Consensus 570 ~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~G~ig~~~~~~~~~l~~~~s~~el~~~ 649 (733)
.+..++.-..|.++|+++--.....|... |. .+ -.+.+ ... .++..++++|.+.
T Consensus 20 ~GIVA~Vs~~Lae~g~NI~disq~~d~~~--~~--ff-m~i~~-------------~~~--------~~~~~~~~~l~~~ 73 (289)
T PRK13010 20 PGIVAAVSGFLAEKGCYIVELTQFDDDES--GR--FF-MRVSF-------------HAQ--------SAEAASVDTFRQE 73 (289)
T ss_pred CCcHHHHHHHHHHCCCCEEeccccccccc--Cc--EE-EEEEE-------------EcC--------CCCCCCHHHHHHH
Confidence 35677888889999999987666544321 10 00 00000 000 2334566666654
Q ss_pred H---HhHcCCCcEEeCCCCCceeEEEE-eeCCchh---HHHHhhhCCCcEEEEccCChh--HHHHHHHCCCeEEEeCCh
Q psy2380 650 I---TRKIGKKPIVIGDLNKKIYEIGW-CTGAAQN---LLTDAINEGVTAYISGEISES--TVYISRESGVAYFAAGHH 719 (733)
Q Consensus 650 l---k~~l~~~~v~~~~~~~~v~rVai-~~GsG~~---~i~~a~~~g~D~~ITGd~~~h--~~~~A~~~g~~li~~gH~ 719 (733)
+ .+.+|+. +++-..++ -.|||| ++|+|+. +++...+...++=|.+=++-| ....|.+.|+.+..+.|-
T Consensus 74 l~~l~~~l~l~-~~i~~~~~-~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~ 150 (289)
T PRK13010 74 FQPVAEKFDMQ-WAIHPDGQ-RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVT 150 (289)
T ss_pred HHHHHHHhCCe-EEEecCCC-CeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCC
Confidence 4 4566765 23322222 247777 6888874 444433333333333333222 245688999999887775
No 353
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=27.68 E-value=47 Score=34.27 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=19.7
Q ss_pred CCHHHHH---HHHHCCCCEEEeccCCCccCC
Q psy2380 538 ASLDLIK---TAVDMNADAILVHHGYFWKGE 565 (733)
Q Consensus 538 ~t~~vi~---~Ai~~~~dlIItHHP~~f~~~ 565 (733)
++++..+ +.++.|+|+||.|||=...+.
T Consensus 192 p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 192 PTPEQRELARALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred CCHHHHHHHHHHHHCCCCEEEcCCCCcCCCe
Confidence 4554444 446789999999999765554
No 354
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=27.51 E-value=89 Score=31.83 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=38.1
Q ss_pred EeeCCch----hHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhh
Q psy2380 673 WCTGAAQ----NLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATE 722 (733)
Q Consensus 673 i~~GsG~----~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE 722 (733)
++-|+|. +-++.|.+.|+|.++++-........+.+.|+.++-..|..+|
T Consensus 63 ~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E 116 (206)
T PRK09140 63 ALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTE 116 (206)
T ss_pred cEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHH
Confidence 4456663 5678888899999999888777777777888877777777766
No 355
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=27.44 E-value=2.5e+02 Score=25.93 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=37.2
Q ss_pred CCccEEEEEEeCCHHHHHHHHHC-C-----------CCEEEeccCCCccCCcccc-cChHHHHHHHHHhcCCe-EEEecC
Q psy2380 527 SNINVIVTGVTASLDLIKTAVDM-N-----------ADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKIN-LYAYHL 592 (733)
Q Consensus 527 ~~v~~I~~ald~t~~vi~~Ai~~-~-----------~dlIItHHP~~f~~~~~~~-~~~~~~~~~~l~~~~I~-vy~~Ht 592 (733)
.+++-|+.+=|...++++...+. + ++++++|||+.-.+..... ........+.+.+.+.. +.+=|+
T Consensus 21 ~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~V~GN~D~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~ 100 (129)
T cd07403 21 EGVDLILSAGDLPKEYLEYLVTMLNVPVYYVHGNHDVDILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHT 100 (129)
T ss_pred CCCCEEEECCCCChHHHHHHHHHcCCCEEEEeCCCccCEEEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCc
Confidence 45666666666666665555442 2 6789999998532211111 11223444555555554 444466
Q ss_pred CCCC
Q psy2380 593 PLDM 596 (733)
Q Consensus 593 ~lD~ 596 (733)
....
T Consensus 101 H~~~ 104 (129)
T cd07403 101 HLNY 104 (129)
T ss_pred CCCc
Confidence 5443
No 356
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=27.33 E-value=55 Score=34.98 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHhcCC
Q psy2380 422 RTFQAIRIYINQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINFNTK 477 (733)
Q Consensus 422 ~~FqalRi~vN~El~~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~~~~ 477 (733)
-+|.|-|+-||.||+.|+.=+..+.++|+.||-+.= ==|=++..+.|+...
T Consensus 208 ~al~a~K~DI~EEldRL~sHv~~~~~iL~~~g~vGR-----kLDFl~QE~nREaNT 258 (290)
T COG1561 208 VALLAQKADIAEELDRLKSHVKEFRNILEKGGPVGR-----KLDFLMQEFNREANT 258 (290)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCccch-----hHHHHHHHHhHHHHh
Confidence 358899999999999999999999999988886541 115567777777544
No 357
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=27.19 E-value=2.5e+02 Score=26.54 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHhHcCCCcEEeCC-----C-CCceeEEEEeeCCch--hHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEE-eCC
Q psy2380 648 HHITRKIGKKPIVIGD-----L-NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEISESTVYISRESGVAYFA-AGH 718 (733)
Q Consensus 648 ~~lk~~l~~~~v~~~~-----~-~~~v~rVai~~GsG~--~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~-~gH 718 (733)
-++.++++++.+.+.+ + +..++.|-|-.|.-+ ..|-+..++| |++||.|.. -+..+.+.|..+++ =|+
T Consensus 3 ~~~a~r~~i~vi~Van~~h~~~~~~~~~~i~Vd~g~DaaD~~I~~~~~~g-DiVITqDig--LA~~~l~Kga~vl~~rG~ 79 (130)
T PF02639_consen 3 IRVAKRYGIPVIFVANYSHRLPRSPYVEMIVVDSGFDAADFYIVNHAKPG-DIVITQDIG--LASLLLAKGAYVLNPRGK 79 (130)
T ss_pred HHHHHHHCCEEEEEeCCCccCCCCCCeEEEEECCCCChHHHHHHHcCCCC-CEEEECCHH--HHHHHHHCCCEEECCCCC
Confidence 3567888998777732 1 256888877777664 3344434444 999999975 34456788887776 354
Q ss_pred hhh
Q psy2380 719 HAT 721 (733)
Q Consensus 719 ~~s 721 (733)
..|
T Consensus 80 ~yt 82 (130)
T PF02639_consen 80 EYT 82 (130)
T ss_pred CCC
Confidence 433
No 358
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=27.03 E-value=50 Score=34.18 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=19.8
Q ss_pred CCHHHHHHH---HHCCCCEEEeccCCCccCC
Q psy2380 538 ASLDLIKTA---VDMNADAILVHHGYFWKGE 565 (733)
Q Consensus 538 ~t~~vi~~A---i~~~~dlIItHHP~~f~~~ 565 (733)
++++..+.| ++.|+|+||.|||=...+.
T Consensus 190 p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 190 PTDEQRELAHALIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred CCHHHHHHHHHHHHcCCCEEEcCCCCcCCce
Confidence 455544444 5589999999999766554
No 359
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=27.02 E-value=88 Score=31.78 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=26.3
Q ss_pred CCEEEeccCCCccCCccc-c-----cChHHHHHHHHH-hc-CCe-EEEecCCCCCC
Q psy2380 551 ADAILVHHGYFWKGENSN-I-----VGIKKKRLEQLI-IN-KIN-LYAYHLPLDMH 597 (733)
Q Consensus 551 ~dlIItHHP~~f~~~~~~-~-----~~~~~~~~~~l~-~~-~I~-vy~~Ht~lD~~ 597 (733)
--+|++|||+.-.+.... . .....+.+..++ ++ ++. +++=|...+..
T Consensus 108 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~ 163 (214)
T cd07399 108 PAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGR 163 (214)
T ss_pred CEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCce
Confidence 348999999864332111 1 012234565555 44 576 57778877754
No 360
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=26.99 E-value=1.2e+02 Score=34.69 Aligned_cols=69 Identities=22% Similarity=0.396 Sum_probs=50.1
Q ss_pred CCEEEEEccCCChhHHHHHHHc---CCCcEEEEEeCCHHHHHHhc-ccC----CCcEEEEccCccchHHHHHhCCCCccc
Q psy2380 244 NGIYIDATFGQGGHSCKILERL---GKKGRLIAIDKDTESVSLGN-KIT----DSRFSIIHNCFTELDIILKKYNIKKID 315 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~---~~~~~l~~~D~D~~a~~~a~-~l~----~~r~~~~~~~f~~~~~~l~~~~~~~~d 315 (733)
+.+++|.=.|.|-=+.+-++.. +...+|||++..+.|....+ +.+ +++++++++.-+++.- + .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--p----ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--P----EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--S----S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--C----Ccee
Confidence 5799999999999998877652 33579999999999997764 322 5899999998877642 2 2688
Q ss_pred EEE
Q psy2380 316 GIL 318 (733)
Q Consensus 316 gil 318 (733)
.|+
T Consensus 261 IIV 263 (448)
T PF05185_consen 261 IIV 263 (448)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 361
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=26.63 E-value=85 Score=32.47 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccch
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSL 463 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSl 463 (733)
.++..|..+.++|+|||++++.+|..-
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 467889999999999999999988653
No 362
>KOG1271|consensus
Probab=26.56 E-value=72 Score=32.07 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHhccccCCeEEEEeccchhhhHHHHH
Q psy2380 442 LKIGFKKLNIKGRIVVISFHSLEDRIVKNF 471 (733)
Q Consensus 442 l~~~~~~l~~gg~l~visfhSlEdr~vk~~ 471 (733)
+....++|+|||+++|-|-.-=+|.+|++|
T Consensus 164 ~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 164 LDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred hhhHhhccCCCcEEEEEecCccHHHHHHHH
No 363
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=26.47 E-value=1e+02 Score=36.60 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=17.1
Q ss_pred HHHHhhhCCCcEEEEccCC---hhHHHHHHHCCCeEEEeCCh
Q psy2380 681 LLTDAINEGVTAYISGEIS---ESTVYISRESGVAYFAAGHH 719 (733)
Q Consensus 681 ~i~~a~~~g~D~~ITGd~~---~h~~~~A~~~g~~li~~gH~ 719 (733)
.++.+.+.|+|++||-|.. +-+...|++.|+.+|...|+
T Consensus 119 ~i~~~~~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH 160 (575)
T PRK11070 119 VVDQAHARGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHH 160 (575)
T ss_pred HHHHHHhcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCC
Confidence 3444444444555554442 11233344445555555544
No 364
>PRK08267 short chain dehydrogenase; Provisional
Probab=26.45 E-value=1.9e+02 Score=29.65 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHh-cccCCCcEEEEccCccchHHH---HHhC---CCCcccEEEEcCCCC
Q psy2380 253 GQGGHSCKILERL-GKKGRLIAIDKDTESVSLG-NKITDSRFSIIHNCFTELDII---LKKY---NIKKIDGILFDLGIS 324 (733)
Q Consensus 253 G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a-~~l~~~r~~~~~~~f~~~~~~---l~~~---~~~~~dgil~DLGvs 324 (733)
|.||=-.++.+.+ ..+.+|+.+|++++.++.. +.+.+.++.+++.+..+.++. ++.. ..+++|.++-.-|+.
T Consensus 9 asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 9 AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 3444344444433 2356999999999987765 334345788888887775543 2221 024789999988876
Q ss_pred c
Q psy2380 325 S 325 (733)
Q Consensus 325 s 325 (733)
.
T Consensus 89 ~ 89 (260)
T PRK08267 89 R 89 (260)
T ss_pred C
Confidence 5
No 365
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=26.44 E-value=1.5e+02 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCCcEEEEccCChhHHHHHHHCCCeEEEeCC
Q psy2380 688 EGVTAYISGEISESTVYISRESGVAYFAAGH 718 (733)
Q Consensus 688 ~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH 718 (733)
.|||++|||-+-........+.|+.++....
T Consensus 64 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCAKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeehhhCccHHHHHHHCCCEEEEecC
Confidence 7999999999999988888999999996655
No 366
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=26.30 E-value=88 Score=32.14 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHH
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFI 472 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~ 472 (733)
+...+++.+.+.|+|||++++......+|+.....+
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~ 174 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL 174 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHH
Confidence 467899999999999999998876666665544433
No 367
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=26.26 E-value=72 Score=33.02 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHhccc--cCCeEEEEec
Q psy2380 432 NQELKNLSIALKIGFKKLN--IKGRIVVISF 460 (733)
Q Consensus 432 N~El~~l~~~l~~~~~~l~--~gg~l~visf 460 (733)
++|++.+.+.|..+.+.|. ++-|+++|||
T Consensus 19 ~~~l~~~~~sl~~~l~~lp~~~~~~igiITf 49 (239)
T cd01468 19 EGLLQALKESLLASLDLLPGDPRARVGLITY 49 (239)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Confidence 5789999999999999998 9999999999
No 368
>PLN02591 tryptophan synthase
Probab=26.23 E-value=7.8e+02 Score=25.86 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=68.0
Q ss_pred HHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCcccccc
Q psy2380 540 LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFS 619 (733)
Q Consensus 540 ~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~ 619 (733)
++-+++|.+.|+|=+|..- +-+ +...+....+.++||....+=+|=- ..+.+.+......--...
T Consensus 96 ~~F~~~~~~aGv~GviipD-LP~--------ee~~~~~~~~~~~gl~~I~lv~Ptt------~~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPD-LPL--------EETEALRAEAAKNGIELVLLTTPTT------PTERMKAIAEASEGFVYL 160 (250)
T ss_pred HHHHHHHHHcCCCEEEeCC-CCH--------HHHHHHHHHHHHcCCeEEEEeCCCC------CHHHHHHHHHhCCCcEEE
Confidence 3568889999998777651 111 2235778889999998877754321 122333333222110000
Q ss_pred ccCccceeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeCCCCCceeEEEEeeCCch---hHHHHhhhCCCcEEEEc
Q psy2380 620 KNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQ---NLLTDAINEGVTAYISG 696 (733)
Q Consensus 620 ~~~~G~ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~~~~~~v~rVai~~GsG~---~~i~~a~~~g~D~~ITG 696 (733)
-...|.-|. .-..+..++++++++|+.-+. -+|.|.|- +-++.+.+.|||-+|.|
T Consensus 161 Vs~~GvTG~-------~~~~~~~~~~~i~~vk~~~~~---------------Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 161 VSSTGVTGA-------RASVSGRVESLLQELKEVTDK---------------PVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred eeCCCCcCC-------CcCCchhHHHHHHHHHhcCCC---------------ceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 011333332 011134578888888763221 24557663 45777778889999998
Q ss_pred cC
Q psy2380 697 EI 698 (733)
Q Consensus 697 d~ 698 (733)
-.
T Consensus 219 Sa 220 (250)
T PLN02591 219 SA 220 (250)
T ss_pred HH
Confidence 53
No 369
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.15 E-value=2.3e+02 Score=29.13 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=50.1
Q ss_pred EccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHh-cccC-CCcEEEEccCccchHHH---HHhC-CCCcccEEEEcCC
Q psy2380 250 ATFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLG-NKIT-DSRFSIIHNCFTELDII---LKKY-NIKKIDGILFDLG 322 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a-~~l~-~~r~~~~~~~f~~~~~~---l~~~-~~~~~dgil~DLG 322 (733)
.|-|.||--.++.+.+ ..+.+|+++||+++..+.. +.+. ..++.++..+..+..+. .+.. ...++|+++..=|
T Consensus 10 ItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ag 89 (263)
T PRK09072 10 LTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLINNAG 89 (263)
T ss_pred EECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4556666666666654 3467999999999877655 3443 45788888888776542 2211 1357899998887
Q ss_pred CCc
Q psy2380 323 ISS 325 (733)
Q Consensus 323 vss 325 (733)
+..
T Consensus 90 ~~~ 92 (263)
T PRK09072 90 VNH 92 (263)
T ss_pred CCC
Confidence 654
No 370
>PRK04266 fibrillarin; Provisional
Probab=26.02 E-value=74 Score=32.85 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.5
Q ss_pred HHHHHHHHHhccccCCeEEE
Q psy2380 438 LSIALKIGFKKLNIKGRIVV 457 (733)
Q Consensus 438 l~~~l~~~~~~l~~gg~l~v 457 (733)
.+.+|+.+.+.|||||+++|
T Consensus 155 ~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 155 AEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 35578899999999999999
No 371
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.94 E-value=3.4e+02 Score=27.63 Aligned_cols=76 Identities=9% Similarity=0.173 Sum_probs=46.7
Q ss_pred EEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccCCCcEEEEccCccchHHH---HHhC--CCCcccEEEEc
Q psy2380 247 YIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKITDSRFSIIHNCFTELDII---LKKY--NIKKIDGILFD 320 (733)
Q Consensus 247 ~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil~D 320 (733)
+..+|=|-|-|...-|.+ .+.+|++++++++..+.. ++..+.++.++..++.+...+ +++. ...++|+++..
T Consensus 16 ItGa~g~iG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ 93 (264)
T PRK12829 16 VTGGASGIGRAIAEAFAE--AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLVNN 93 (264)
T ss_pred EeCCCCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 335554445454444433 357899999998876653 233223678888888776543 3221 12469999999
Q ss_pred CCCC
Q psy2380 321 LGIS 324 (733)
Q Consensus 321 LGvs 324 (733)
-|++
T Consensus 94 ag~~ 97 (264)
T PRK12829 94 AGIA 97 (264)
T ss_pred CCCC
Confidence 8865
No 372
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.57 E-value=5.1e+02 Score=29.42 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHhHcCCCcEEeC--CCCC--------------ce-eEEEEeeCCchhHHHHhhhCCCcEEEEccCChh
Q psy2380 639 KIITIKDLFHHITRKIGKKPIVIG--DLNK--------------KI-YEIGWCTGAAQNLLTDAINEGVTAYISGEISES 701 (733)
Q Consensus 639 ~~~s~~el~~~lk~~l~~~~v~~~--~~~~--------------~v-~rVai~~GsG~~~i~~a~~~g~D~~ITGd~~~h 701 (733)
++...-.+++.+. .+|...+.+. ..++ .. ....+.++.-.++.+.+.+.++|++|.+. |
T Consensus 311 ~~~~~~~la~~L~-elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s---~ 386 (435)
T cd01974 311 DPDFLIGLTSFLL-ELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNT---Y 386 (435)
T ss_pred ChHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECc---c
Confidence 3444566677777 4888765542 2111 11 22233444445666666778999999986 4
Q ss_pred HHHHHHHCCCeEEEeC
Q psy2380 702 TVYISRESGVAYFAAG 717 (733)
Q Consensus 702 ~~~~A~~~g~~li~~g 717 (733)
....|.+.|+.++.+|
T Consensus 387 ~~~~a~~~gip~v~~~ 402 (435)
T cd01974 387 GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhCCCEEEee
Confidence 4667788999988776
No 373
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=25.55 E-value=66 Score=33.88 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccccCCeEEEEecc
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFH 461 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfh 461 (733)
+.+.+++.+.++|+|||++++..+.
T Consensus 134 d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 134 DKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5778999999999999999987663
No 374
>PRK07074 short chain dehydrogenase; Provisional
Probab=25.49 E-value=1.8e+02 Score=29.63 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=47.3
Q ss_pred ccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccCCCcEEEEccCccchHHH---HHhC--CCCcccEEEEcCCC
Q psy2380 251 TFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKITDSRFSIIHNCFTELDII---LKKY--NIKKIDGILFDLGI 323 (733)
Q Consensus 251 T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil~DLGv 323 (733)
|=|.||=..++.+.+. .+.+|+++|++++..+.. +.+.+.++..++....+.+++ +++. ..+++|.++..-|.
T Consensus 8 tGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 8 TGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred ECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4444555555555442 356999999998876654 444445788888877776543 2221 12468999999987
Q ss_pred C
Q psy2380 324 S 324 (733)
Q Consensus 324 s 324 (733)
+
T Consensus 88 ~ 88 (257)
T PRK07074 88 A 88 (257)
T ss_pred C
Confidence 5
No 375
>PF14045 YIEGIA: YIEGIA protein
Probab=25.32 E-value=4.7e+02 Score=27.94 Aligned_cols=23 Identities=9% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q psy2380 86 RLMEFPTTLLGVTFNTILLPNLS 108 (733)
Q Consensus 86 ~L~~lP~~i~~~ai~tvllP~lS 108 (733)
.++.+.+|+++++++.+.+|++-
T Consensus 32 ~iiHi~LG~IAa~LGavaiPAL~ 54 (285)
T PF14045_consen 32 YIIHISLGFIAAALGAVAIPALL 54 (285)
T ss_pred chhHHHHHHHHHHhhhhhhHHHh
Confidence 56778889999999999999885
No 376
>PRK08251 short chain dehydrogenase; Provisional
Probab=25.28 E-value=2.3e+02 Score=28.65 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=51.2
Q ss_pred EccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHHHh-cccC----CCcEEEEccCccchHHH---HHhC--CCCcccEEE
Q psy2380 250 ATFGQGGHSCKILERLGK-KGRLIAIDKDTESVSLG-NKIT----DSRFSIIHNCFTELDII---LKKY--NIKKIDGIL 318 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~~~-~~~l~~~D~D~~a~~~a-~~l~----~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil 318 (733)
.|=|.||=-.++++++.. +.+|+..||+++..+.. +.+. +.++.+++.+..+.+++ +++. ..+.+|+++
T Consensus 7 ItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 86 (248)
T PRK08251 7 ITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVI 86 (248)
T ss_pred EECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 566777777777776532 46899999999877654 3332 34788888877765433 3221 135799999
Q ss_pred EcCCCCc
Q psy2380 319 FDLGISS 325 (733)
Q Consensus 319 ~DLGvss 325 (733)
.+-|++.
T Consensus 87 ~~ag~~~ 93 (248)
T PRK08251 87 VNAGIGK 93 (248)
T ss_pred ECCCcCC
Confidence 9988864
No 377
>KOG1975|consensus
Probab=25.23 E-value=81 Score=34.44 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=35.7
Q ss_pred cCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhc
Q psy2380 242 RINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 242 ~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~ 285 (733)
+++..+.|.-+|-||+-..-.+. .-+.++|+|+-.-.++.|+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~ 157 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQAR 157 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHH
Confidence 35778889999999999888765 3578999999999999994
No 378
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=25.16 E-value=69 Score=32.74 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=25.4
Q ss_pred HHhhhHHHHHHHHHHHHhccccCCeEEEEeccc
Q psy2380 430 YINQELKNLSIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 430 ~vN~El~~l~~~l~~~~~~l~~gg~l~visfhS 462 (733)
+++.| .-++.++...++|+|||++.+++|.-
T Consensus 125 ~l~~~--~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 125 ALPEE--MRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCHH--HHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 34544 56778999999999999999999964
No 379
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=25.16 E-value=54 Score=30.76 Aligned_cols=25 Identities=20% Similarity=0.028 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccccCCeEEEEeccc
Q psy2380 438 LSIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 438 l~~~l~~~~~~l~~gg~l~visfhS 462 (733)
.+..|+.+.++|||||++++.+...
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 7789999999999999988777653
No 380
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=25.14 E-value=1.7e+02 Score=30.16 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHcCCC-cEEEEEeCCHHHHHHh-c-ccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcCCC
Q psy2380 253 GQGGHSCKILERLGKK-GRLIAIDKDTESVSLG-N-KITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGI 323 (733)
Q Consensus 253 G~Gghs~~il~~~~~~-~~l~~~D~D~~a~~~a-~-~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLGv 323 (733)
|.|==...+++.+... --|+.+|+|++..+.. + ++ -...++++=.+ .+.|++.|+..+|.+++.-|-
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~---~~~~v~gd~t~-~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL---DTHVVIGDATD-EDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc---ceEEEEecCCC-HHHHHhcCCCcCCEEEEeeCC
Confidence 4444444555555443 4799999999999884 2 33 24444443333 447899999999999998874
No 381
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=24.75 E-value=1.2e+02 Score=34.61 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccccCCeEEEE--eccchhh-hHHHHHHHhc
Q psy2380 438 LSIALKIGFKKLNIKGRIVVI--SFHSLED-RIVKNFINFN 475 (733)
Q Consensus 438 l~~~l~~~~~~l~~gg~l~vi--sfhSlEd-r~vk~~~~~~ 475 (733)
.++.|+.+.++|||||+++.. |.|.-|. ..|++|++++
T Consensus 363 Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 363 QAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 367899999999999999866 4666674 4677777765
No 382
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=24.64 E-value=4.1e+02 Score=27.57 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHhHcCCCcEEe--C--------C----CCCceeEEEEeeCCch-----hHHHHhhhCCCc-EEEE--c
Q psy2380 639 KIITIKDLFHHITRKIGKKPIVI--G--------D----LNKKIYEIGWCTGAAQ-----NLLTDAINEGVT-AYIS--G 696 (733)
Q Consensus 639 ~~~s~~el~~~lk~~l~~~~v~~--~--------~----~~~~v~rVai~~GsG~-----~~i~~a~~~g~D-~~IT--G 696 (733)
......+..+++|+.+.-+-+.+ | + .-+.|+|| +|+---+ ++.+.+.+..=| +++. |
T Consensus 98 dK~~~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDLFdnaksI~rI-icPsknAf~~~d~I~~~i~~~~~~~LiLiaLG 176 (225)
T PF08759_consen 98 DKSKSARYFEKLKQIWKDRDILIVEGEKSRSGVGNDLFDNAKSIKRI-ICPSKNAFSKYDEILEAIKKYAKDKLILIALG 176 (225)
T ss_pred cchHHHHHHHHHHHHhCCCcEEEEecCCeecCCCchhhhCccceEEE-ECCchhhHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 34567888999999997654332 2 1 23679998 6665332 234444433333 3332 2
Q ss_pred cCChhHHHHHHHCCCeEEEeCChhhhHhhHh
Q psy2380 697 EISESTVYISRESGVAYFAAGHHATERYDKS 727 (733)
Q Consensus 697 d~~~h~~~~A~~~g~~li~~gH~~sE~~g~~ 727 (733)
=+--=-+-|..+.|.-+||+||.-+|.-.++
T Consensus 177 PTAtVLayDL~~~G~qaiDiGHiD~EYew~~ 207 (225)
T PF08759_consen 177 PTATVLAYDLSKLGYQAIDIGHIDSEYEWFK 207 (225)
T ss_pred CcchhhHHHHHhcCCeeEecccchHHHHHHH
Confidence 2211125567789999999999999865554
No 383
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.42 E-value=2.3e+02 Score=28.65 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred HcCCC-chHHHHHHHHHHHhccCCCCCHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Q psy2380 373 DYGEE-RFAKKIAKEIVHYRSITPITRTKQLVEIILKSIRGNKRYKNPATRTFQAIRIYINQELKNLSIALKIGFKKLNI 451 (733)
Q Consensus 373 ~ygee-~~~~~ia~~i~~~r~~~~~~tt~~l~~~i~~~~~~~~~~~~~~~~~FqalRi~vN~El~~l~~~l~~~~~~l~~ 451 (733)
.|||+ .-|+.+-...+..=.++. ..+|..+|.+++...++++=-..|+++-.|+++||| ...++++.+.+-..+
T Consensus 93 ~Fde~l~~Ak~lIde~l~~w~~g~---~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~i~D~--~w~~am~aI~dsi~v 167 (195)
T PF11363_consen 93 SFDERLQAAKALIDECLNEWAKGA---DPELRALVNRAFQVDKEGNLNTSRILGLRRLEIDDE--RWQEAMDAIKDSIQV 167 (195)
T ss_pred CcChHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHhcCCCCCcCHHHHHHHHhccCCCH--HHHHHHHHHHhceEe
Confidence 35554 234444444444443332 268999999999865556667789999999999998 999999999999999
Q ss_pred CCeEEEEeccch
Q psy2380 452 KGRIVVISFHSL 463 (733)
Q Consensus 452 gg~l~visfhSl 463 (733)
-|.=.-|=||.-
T Consensus 168 ~~Sk~Yirfy~R 179 (195)
T PF11363_consen 168 VGSKSYIRFYER 179 (195)
T ss_pred ccceeEEEEEEE
Confidence 888777777754
No 384
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=24.40 E-value=74 Score=33.87 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccccCCeEEEEeccchhhhHH
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVISFHSLEDRIV 468 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~visfhSlEdr~v 468 (733)
+++..+++++.++|+|||++++=++-..+.+--
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~ 175 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH 175 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccch
Confidence 367888999999999999999877766655433
No 385
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=24.26 E-value=84 Score=33.38 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHhccccCCeEEEEeccc
Q psy2380 433 QELKNLSIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 433 ~El~~l~~~l~~~~~~l~~gg~l~visfhS 462 (733)
.|++.|++.|..+.+.|-++.++++|||-|
T Consensus 17 ~el~~l~~sl~~~L~~lP~~a~VGlITfd~ 46 (267)
T cd01478 17 EELDALKESLIMSLSLLPPNALVGLITFGT 46 (267)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEECC
Confidence 358899999999999999999999999843
No 386
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=24.13 E-value=74 Score=34.16 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhccccCCeEEEEecc
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVISFH 461 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~visfh 461 (733)
+...+.|+++.+.|+||||++|+-+.
T Consensus 231 ~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 35678899999999999999999864
No 387
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.12 E-value=1.7e+02 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCEEE----eccCCCccCCccc------ccChHHHHHHHHHhcCCeEEEecCCC
Q psy2380 541 DLIKTAVDMNADAIL----VHHGYFWKGENSN------IVGIKKKRLEQLIINKINLYAYHLPL 594 (733)
Q Consensus 541 ~vi~~Ai~~~~dlII----tHHP~~f~~~~~~------~~~~~~~~~~~l~~~~I~vy~~Ht~l 594 (733)
+.++...+.++|.|. +||..-|-|.+.. ..+..++.++.|.+.||.|.+..|.-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 567777888888876 4777777665421 23567899999999999999987743
No 388
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=24.00 E-value=1.6e+02 Score=30.83 Aligned_cols=46 Identities=11% Similarity=-0.092 Sum_probs=25.2
Q ss_pred CEEEeccCCCccCCccccc-ChHHHHHHHHHh-cCC-eEEEecCCCCCC
Q psy2380 552 DAILVHHGYFWKGENSNIV-GIKKKRLEQLII-NKI-NLYAYHLPLDMH 597 (733)
Q Consensus 552 dlIItHHP~~f~~~~~~~~-~~~~~~~~~l~~-~~I-~vy~~Ht~lD~~ 597 (733)
-++++|||+.-........ ....+....+.+ +++ .+++=|+..+..
T Consensus 182 viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~ 230 (267)
T cd07396 182 VIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGY 230 (267)
T ss_pred EEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCc
Confidence 3889999975433211111 112344444545 365 477879888763
No 389
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=23.97 E-value=1.1e+02 Score=30.57 Aligned_cols=36 Identities=14% Similarity=-0.136 Sum_probs=26.8
Q ss_pred HHHHHHHHhccccCCeEEEEeccchhhhHHHHHHHh
Q psy2380 439 SIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFINF 474 (733)
Q Consensus 439 ~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~~ 474 (733)
+.+++.+.++|+|||++.+.|-+----.-+.+.+++
T Consensus 112 ~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 112 PHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 678899999999999999998776434434444444
No 390
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=23.95 E-value=3.8e+02 Score=31.22 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=41.5
Q ss_pred chhhHHHH----HHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhHHHHHh
Q psy2380 162 CAGWGVFF----IRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLI--LLFCGITYFLALRIMGFLFLNEAIN 234 (733)
Q Consensus 162 ~~~~~~~~----~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~l~i~--v~iG~ivY~~ll~ll~pvll~Evl~ 234 (733)
...+++.+ ..|++..++|..+.+.+....++.+ ..+..+...+.. ..+|+.+|.++-.++.|.=++-.+.
T Consensus 157 lP~~l~~f~G~rfvPiit~lv~~~l~~i~~~iwp~i~---~~i~~~~~~l~~~~~~~g~~i~G~l~r~Lv~~GLHh~~~ 232 (502)
T TIGR02002 157 LPEYLGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQ---DALNTFSHWAAYQNPVVAFFIFGFIERSLIPFGLHHIFN 232 (502)
T ss_pred CcHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcchHHHH
Confidence 35567788 8888888888777766543333321 112222222222 2468889988888777765555544
No 391
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.64 E-value=9.1e+02 Score=25.74 Aligned_cols=80 Identities=14% Similarity=-0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hcCcc----cHHHHHHHHHHHHHH
Q psy2380 139 GLGACLHASFLYWYLRHKRIYIPCAGWGVFFIRLVIALLLLVIVALWGNSYFNWL-GMQAH----PIFRIVALLLILLFC 213 (733)
Q Consensus 139 ~is~~v~~iL~~~~l~r~i~~~~~~~~~~~~~k~~lAs~iM~ivv~~i~~~l~~~-~~~~~----~~~~li~l~i~v~iG 213 (733)
.++.++..+-..+++...++... +-.++.+++++++++.+..++... ..... ....+..+++++++|
T Consensus 23 l~ta~la~~s~~~a~~~~~~~~~--------~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvlia 94 (301)
T PF14362_consen 23 LFTALLAGLSGGYALYTVFGGPV--------WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIA 94 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhccch--------HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666655421 334455577888888777765311 10011 112344466777777
Q ss_pred HHHHHHH-HHHhhh
Q psy2380 214 GITYFLA-LRIMGF 226 (733)
Q Consensus 214 ~ivY~~l-l~ll~p 226 (733)
+++=-.+ +.++.+
T Consensus 95 ivIs~pl~l~iF~~ 108 (301)
T PF14362_consen 95 IVISEPLELKIFEK 108 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 6655433 444444
No 392
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=23.64 E-value=3e+02 Score=32.61 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=51.5
Q ss_pred CCCEEEEEccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHh-cccC-----------CCcEEEEccCccchHHHHHhC
Q psy2380 243 INGIYIDATFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLG-NKIT-----------DSRFSIIHNCFTELDIILKKY 309 (733)
Q Consensus 243 ~~~~~vD~T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a-~~l~-----------~~r~~~~~~~f~~~~~~l~~~ 309 (733)
.+.+++ .|-|.||=-+++.+++ ..+.+|++++|+++..+.. +.+. ..++.++.++..+.+.+.+.+
T Consensus 79 ~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 444333 3444455445555444 2457899999998876543 2211 136889999999877765544
Q ss_pred CCCcccEEEEcCCCCc
Q psy2380 310 NIKKIDGILFDLGISS 325 (733)
Q Consensus 310 ~~~~~dgil~DLGvss 325 (733)
..+|.++...|...
T Consensus 158 --ggiDiVVn~AG~~~ 171 (576)
T PLN03209 158 --GNASVVICCIGASE 171 (576)
T ss_pred --cCCCEEEEcccccc
Confidence 46899999999763
No 393
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=23.62 E-value=2.7e+02 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy2380 165 WGVFFIRLVIALLLLVIV 182 (733)
Q Consensus 165 ~~~~~~k~~lAs~iM~iv 182 (733)
+.+.+++.+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAIT 21 (199)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 394
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.54 E-value=2.8e+02 Score=28.42 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=47.7
Q ss_pred ccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC-CCcEEEEccCccchHHHHH---hC--CCCcccEEEEcCC
Q psy2380 251 TFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT-DSRFSIIHNCFTELDIILK---KY--NIKKIDGILFDLG 322 (733)
Q Consensus 251 T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~-~~r~~~~~~~f~~~~~~l~---~~--~~~~~dgil~DLG 322 (733)
|=|.||=-.++.+.+. .+.+|+.+|++++.++.. +.+. ..++.++..+..+-+++.+ +. ..+.+|.++.+-|
T Consensus 8 tGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag 87 (257)
T PRK07024 8 TGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAG 87 (257)
T ss_pred EcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 4455555555555442 356999999999887665 3443 2278888888877554322 11 1246899999988
Q ss_pred CCc
Q psy2380 323 ISS 325 (733)
Q Consensus 323 vss 325 (733)
++.
T Consensus 88 ~~~ 90 (257)
T PRK07024 88 ISV 90 (257)
T ss_pred cCC
Confidence 753
No 395
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.45 E-value=3.7e+02 Score=27.30 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=50.0
Q ss_pred CEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchHHH---HHhC--CCCccc
Q psy2380 245 GIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELDII---LKKY--NIKKID 315 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~~~---l~~~--~~~~~d 315 (733)
+.++ .|=|.||=-.++.+.+. .+.+|+..+++++..+.. +++. ..++.++..+.++.++. +++. ..+++|
T Consensus 7 k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (254)
T PRK07478 7 KVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLD 85 (254)
T ss_pred CEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4444 56556665555555442 357999999999887765 4443 34677887777765432 2211 124799
Q ss_pred EEEEcCCCC
Q psy2380 316 GILFDLGIS 324 (733)
Q Consensus 316 gil~DLGvs 324 (733)
+++.+-|+.
T Consensus 86 ~li~~ag~~ 94 (254)
T PRK07478 86 IAFNNAGTL 94 (254)
T ss_pred EEEECCCCC
Confidence 999999876
No 396
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.40 E-value=2.6e+02 Score=29.31 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred HHHHhhhhcccccCCCEEEEEccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHhcccC-CCcEEE-EccCccchHHHHH
Q psy2380 230 NEAINWLNIENERINGIYIDATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLGNKIT-DSRFSI-IHNCFTELDIILK 307 (733)
Q Consensus 230 ~Evl~~L~~~~~~~~~~~vD~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l~-~~r~~~-~~~~f~~~~~~l~ 307 (733)
...++.+.. .-+|.+++|.-.-.||-|..+|++- -.+|||+|.--.=++. +|. ++|+.. -+.|+.++..---
T Consensus 68 ~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~--kLR~d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 68 EKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHW--KLRNDPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCH--hHhcCCcEEEEecCChhhCCHHHc
Confidence 344555543 1358899999999999999999983 3689999987543332 232 456654 3446666532211
Q ss_pred hCCCCcccEEEEcC
Q psy2380 308 KYNIKKIDGILFDL 321 (733)
Q Consensus 308 ~~~~~~~dgil~DL 321 (733)
.+.+|.++.|+
T Consensus 142 ---~~~~d~~v~Dv 152 (245)
T COG1189 142 ---TEKPDLIVIDV 152 (245)
T ss_pred ---ccCCCeEEEEe
Confidence 12567777775
No 397
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=23.38 E-value=1.2e+02 Score=31.81 Aligned_cols=47 Identities=13% Similarity=-0.168 Sum_probs=28.3
Q ss_pred CCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCe-EEEecCCCCCC
Q psy2380 549 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKIN-LYAYHLPLDMH 597 (733)
Q Consensus 549 ~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~-vy~~Ht~lD~~ 597 (733)
.+-.+|++|||+..-.. . ......+....+.++++. +++=|+..+..
T Consensus 165 ~~~~IV~~HhP~~~~~~-~-~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 165 SNYTIWFGHYPTSTIIS-P-SAKSSSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred CCeEEEEEcccchhccC-C-CcchhHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 34569999999843111 1 111122366667788884 67888877765
No 398
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=23.25 E-value=2.7e+02 Score=28.31 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=49.6
Q ss_pred ccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHhc-ccCCCcEEEEccCccchHH---HHHhC--CCCcccEEEEcCCC
Q psy2380 251 TFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLGN-KITDSRFSIIHNCFTELDI---ILKKY--NIKKIDGILFDLGI 323 (733)
Q Consensus 251 T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a~-~l~~~r~~~~~~~f~~~~~---~l~~~--~~~~~dgil~DLGv 323 (733)
|=|.||--.++.+.+ ..+.+|+++|++++.++... .+ ..++.++..+.++.++ .+++. ...++|+++..-|+
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 556677777777765 34679999999988665542 23 3467788877776544 33321 12469999999987
Q ss_pred Cc
Q psy2380 324 SS 325 (733)
Q Consensus 324 ss 325 (733)
+.
T Consensus 85 ~~ 86 (248)
T PRK10538 85 AL 86 (248)
T ss_pred cC
Confidence 54
No 399
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=23.11 E-value=1e+02 Score=32.09 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHHcCCCchHHHHHHHHHHH---------hccCCCCCHHHHHHHHH-hhcCCCCCCCCchhHHHHHH
Q psy2380 361 NATEFNIKKVIQDYGEERFAKKIAKEIVHY---------RSITPITRTKQLVEIIL-KSIRGNKRYKNPATRTFQAI 427 (733)
Q Consensus 361 ~~~~~~l~~i~~~ygee~~~~~ia~~i~~~---------r~~~~~~tt~~l~~~i~-~~~~~~~~~~~~~~~~Fqal 427 (733)
..|+++|.+.|-. ..-..|++.|++. |+..-=+...|.+++|. .++.++.+.-||.+|+=+||
T Consensus 57 ~As~~~L~k~FGT----~d~~ei~~~IL~kGeiQls~~eR~~~~e~k~~~Ii~~Ia~~~VnP~T~~P~p~~rIE~Am 129 (231)
T TIGR00291 57 KASEEDLRKIFGT----TDVDEVAEKIILKGEIQLTAEQRREMLEKKRNQIINIISRNTINPQTKKPHPPTRIEKAL 129 (231)
T ss_pred cCCHHHHHHHhCC----CCHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHH
Confidence 4466666666632 2344666666642 21111112357777774 45554445679999886665
No 400
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.11 E-value=2.6e+02 Score=29.66 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=50.7
Q ss_pred EccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchH---HHHHhC--CCCcccEEEEc
Q psy2380 250 ATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELD---IILKKY--NIKKIDGILFD 320 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~---~~l~~~--~~~~~dgil~D 320 (733)
.|=|.||=-.++.+.+. .+.+|+.+||+++..+.. +.+. ..++.++..+..+-+ +.++.. ..+.+|.++..
T Consensus 45 ItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~ 124 (293)
T PRK05866 45 LTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINN 124 (293)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 67778888888877652 357999999999877664 3442 345777777665543 334321 12479999999
Q ss_pred CCCC
Q psy2380 321 LGIS 324 (733)
Q Consensus 321 LGvs 324 (733)
-|+.
T Consensus 125 AG~~ 128 (293)
T PRK05866 125 AGRS 128 (293)
T ss_pred CCCC
Confidence 8864
No 401
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=23.01 E-value=5.5e+02 Score=29.76 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCchhhHHHH----HHHHHHHHHHHHHHHHHHHhHhhhhcCcccHHHHHHHHHH--HHHHH
Q psy2380 141 GACLHASFLYWYLRHKRIYIPCAGWGVFF----IRLVIALLLLVIVALWGNSYFNWLGMQAHPIFRIVALLLI--LLFCG 214 (733)
Q Consensus 141 s~~v~~iL~~~~l~r~i~~~~~~~~~~~~----~k~~lAs~iM~ivv~~i~~~l~~~~~~~~~~~~li~l~i~--v~iG~ 214 (733)
..++..++..+...|..+.. .+.+++.+ .-|++..++|..+.+.....++..+ ..+..+...+.. ..+|+
T Consensus 120 ggIi~g~i~a~l~nkf~~~~-lP~~l~ff~G~rfVPiit~lv~i~l~li~~~iwppi~---~~I~~~~~~i~~~g~~~g~ 195 (477)
T PRK11089 120 GGIIAGAIAAYMFNRFYRIK-LPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIG---SAIQTFSQWAAYQNPVVAF 195 (477)
T ss_pred HHHHHHHHHHHHHHHHhccc-CcHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCchHHH
Confidence 33344444444444444443 35567777 7888888888877766554443221 111222222221 23588
Q ss_pred HHHHHHHHHhhhhhHHHHHh
Q psy2380 215 ITYFLALRIMGFLFLNEAIN 234 (733)
Q Consensus 215 ivY~~ll~ll~pvll~Evl~ 234 (733)
.+|..+-.++.|.=++-++.
T Consensus 196 ~iyG~l~rlLIp~GLHh~l~ 215 (477)
T PRK11089 196 GIYGFVERSLVPFGLHHIWN 215 (477)
T ss_pred HHHHHHHHHHHHhcchHhhh
Confidence 89999999988887777666
No 402
>PRK06194 hypothetical protein; Provisional
Probab=23.00 E-value=3.7e+02 Score=27.93 Aligned_cols=81 Identities=6% Similarity=0.091 Sum_probs=52.4
Q ss_pred CEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchHH---HHHhC--CCCccc
Q psy2380 245 GIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELDI---ILKKY--NIKKID 315 (733)
Q Consensus 245 ~~~vD~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~~---~l~~~--~~~~~d 315 (733)
+.++ .|=|.||=-.++.+++. .+.+|+.+|++++..+.. +++. +.++.++..+.++-++ .++.. ...++|
T Consensus 7 k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id 85 (287)
T PRK06194 7 KVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVH 85 (287)
T ss_pred CEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3444 56666666666665542 357899999998877665 3443 3468888888876443 33221 124689
Q ss_pred EEEEcCCCCcc
Q psy2380 316 GILFDLGISSN 326 (733)
Q Consensus 316 gil~DLGvss~ 326 (733)
.++-.-|+++.
T Consensus 86 ~vi~~Ag~~~~ 96 (287)
T PRK06194 86 LLFNNAGVGAG 96 (287)
T ss_pred EEEECCCCCCC
Confidence 99999998764
No 403
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=22.97 E-value=1.7e+02 Score=29.79 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=46.3
Q ss_pred EccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCcc-----chHHHHHhC--CCCcccEE
Q psy2380 250 ATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFT-----ELDIILKKY--NIKKIDGI 317 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~-----~~~~~l~~~--~~~~~dgi 317 (733)
.|=|.||-..++.+.+. .+.+|+++|++++..+.. +++. ..++.++..... ++.+..+.. ...++|++
T Consensus 17 ItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~id~v 96 (247)
T PRK08945 17 VTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQFGRLDGV 96 (247)
T ss_pred EeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 45566666666666553 356999999999876554 3332 345666655442 233332221 12479999
Q ss_pred EEcCCCCcc
Q psy2380 318 LFDLGISSN 326 (733)
Q Consensus 318 l~DLGvss~ 326 (733)
+..-|++..
T Consensus 97 i~~Ag~~~~ 105 (247)
T PRK08945 97 LHNAGLLGE 105 (247)
T ss_pred EECCcccCC
Confidence 998887543
No 404
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=22.87 E-value=46 Score=32.81 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=23.6
Q ss_pred ccCCChhHHHHHHHc-------CCCcEEEEEeCCHHHHHHhc
Q psy2380 251 TFGQGGHSCKILERL-------GKKGRLIAIDKDTESVSLGN 285 (733)
Q Consensus 251 T~G~Gghs~~il~~~-------~~~~~l~~~D~D~~a~~~a~ 285 (733)
-+|.|||+.+|+.-. ...-..+.-+-|+...+.++
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~ 45 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAE 45 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHH
Confidence 379999999987643 22345666777777766543
No 405
>PRK10537 voltage-gated potassium channel; Provisional
Probab=22.85 E-value=1.1e+03 Score=26.47 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHH-HHHhhhhhHHHHHhhhhccc---ccCCCEEEEEccCCChhHHHHHHHcCC-CcEEEEEeCCHHHHH
Q psy2380 208 LILLFCGITYFLA-LRIMGFLFLNEAINWLNIEN---ERINGIYIDATFGQGGHSCKILERLGK-KGRLIAIDKDTESVS 282 (733)
Q Consensus 208 i~v~iG~ivY~~l-l~ll~pvll~Evl~~L~~~~---~~~~~~~vD~T~G~Gghs~~il~~~~~-~~~l~~~D~D~~a~~ 282 (733)
+.++.|+.++... ..++.|+..+...+.++... ..++.++| +|.|--.+.+.+.+.+ +..+..+|.|+. +
T Consensus 201 ~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~~~~~~k~HvII---~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~ 275 (393)
T PRK10537 201 SVIILGITVFATSISAIFGPVIRGNLKRLVKGRISHMHRKDHFII---CGHSPLAINTYLGLRQRGQAVTVIVPLGL--E 275 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCeEEE---ECCChHHHHHHHHHHHCCCCEEEEECchh--h
Confidence 3344566555443 23445654444333332100 01233333 5777777778776633 457888898732 1
Q ss_pred HhcccCCCcEEEEccCccchHHHHHhCCCCcccEEEEcC
Q psy2380 283 LGNKITDSRFSIIHNCFTELDIILKKYNIKKIDGILFDL 321 (733)
Q Consensus 283 ~a~~l~~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DL 321 (733)
+.. ++.+.+++++-++ ++.|++.|+++.++++.-.
T Consensus 276 --~~~-~~g~~vI~GD~td-~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 276 --HRL-PDDADLIPGDSSD-SAVLKKAGAARARAILALR 310 (393)
T ss_pred --hhc-cCCCcEEEeCCCC-HHHHHhcCcccCCEEEEcC
Confidence 111 2456789998887 5678889999999999854
No 406
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=22.80 E-value=1.1e+03 Score=26.43 Aligned_cols=80 Identities=5% Similarity=0.069 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHH
Q psy2380 41 AVRRILKKMGPSVFSVFAAQISLMLNTNIASQ-MREGSLSCLSYADRLMEFPTTLLGVTFNTILLPNLSKARIENNTEEY 119 (733)
Q Consensus 41 ~lk~ll~l~iPiil~~~v~qi~~~iD~~ias~-l~~g~v~~l~~A~~L~~lP~~i~~~ai~tvllP~lS~~~a~~d~~~~ 119 (733)
..+++.+-+++..++..+..+..++-....+. +++.+.|.+.++..+.++-..+....+..++.-.+++..++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45667777778888877888877777665554 57888999999999998886554455666666666666655554443
Q ss_pred H
Q psy2380 120 S 120 (733)
Q Consensus 120 ~ 120 (733)
.
T Consensus 84 ~ 84 (480)
T COG2244 84 I 84 (480)
T ss_pred H
Confidence 3
No 407
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=22.79 E-value=1.3e+02 Score=34.17 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.1
Q ss_pred HHHHHHHHHhccccCCeEEEEe--ccchhhhH-HHHHHHhc
Q psy2380 438 LSIALKIGFKKLNIKGRIVVIS--FHSLEDRI-VKNFINFN 475 (733)
Q Consensus 438 l~~~l~~~~~~l~~gg~l~vis--fhSlEdr~-vk~~~~~~ 475 (733)
.++.|+.+..+|+|||+++..| ++..|..- |+.+.++.
T Consensus 351 q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 351 QSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 3578999999999999998764 55555554 45555543
No 408
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=22.73 E-value=91 Score=32.68 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCEEEeccCCCccCCcccccChHHHHHHHHHhcCCe-EEEecCCCCC
Q psy2380 551 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKIN-LYAYHLPLDM 596 (733)
Q Consensus 551 ~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~-vy~~Ht~lD~ 596 (733)
--++++|||++-............+....+.++++. +++-|++...
T Consensus 168 ~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~ 214 (277)
T cd07378 168 WKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQ 214 (277)
T ss_pred eEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccce
Confidence 458999999853321111011223445556677765 5666765543
No 409
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.44 E-value=1.3e+02 Score=30.85 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=27.5
Q ss_pred hHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeCChhhhH
Q psy2380 680 NLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAGHHATER 723 (733)
Q Consensus 680 ~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~~sE~ 723 (733)
+..+.|.+.|++.++|--...--...|++.|+.++-.-|..+|-
T Consensus 79 ~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 79 VTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred HHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECCcCCHHHH
Confidence 44666666777777766666555556666666666666655553
No 410
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=22.36 E-value=72 Score=32.40 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhccccCCeEEEEecc
Q psy2380 434 ELKNLSIALKIGFKKLNIKGRIVVISFH 461 (733)
Q Consensus 434 El~~l~~~l~~~~~~l~~gg~l~visfh 461 (733)
+.++|+.++....+.|+|||.+++=|++
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4568999999999999999999999985
No 411
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=22.29 E-value=83 Score=33.53 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhccccCCeEEEEeccchhh
Q psy2380 436 KNLSIALKIGFKKLNIKGRIVVISFHSLED 465 (733)
Q Consensus 436 ~~l~~~l~~~~~~l~~gg~l~visfhSlEd 465 (733)
+.....++.+.++|+|||++.++.+.+-+|
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~ 229 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTED 229 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 378899999999999999999988877665
No 412
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=22.11 E-value=1.8e+02 Score=26.68 Aligned_cols=32 Identities=3% Similarity=-0.069 Sum_probs=27.9
Q ss_pred CCCcEEEEccCChhHHHHHHHCCCeEEEeCCh
Q psy2380 688 EGVTAYISGEISESTVYISRESGVAYFAAGHH 719 (733)
Q Consensus 688 ~g~D~~ITGd~~~h~~~~A~~~g~~li~~gH~ 719 (733)
.|||++|||.+-........+.|+.++-.+-.
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~~~~ 93 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKVNEP 93 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEecCCC
Confidence 79999999999999988888999999866543
No 413
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=21.97 E-value=81 Score=31.86 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHH
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIV 468 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~v 468 (733)
.+...|+++.+.|+|||+++++.+..-++...
T Consensus 136 ~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~ 167 (239)
T PRK00216 136 DIDKALREMYRVLKPGGRLVILEFSKPTNPPL 167 (239)
T ss_pred CHHHHHHHHHHhccCCcEEEEEEecCCCchHH
Confidence 46788999999999999999998876555443
No 414
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=21.93 E-value=1.3e+02 Score=29.58 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccccCCeEEE
Q psy2380 437 NLSIALKIGFKKLNIKGRIVV 457 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~v 457 (733)
.++..++.+.++|+|||++++
T Consensus 109 ~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 109 NLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEE
Confidence 456678889999999999865
No 415
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.54 E-value=2.6e+02 Score=25.11 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=24.2
Q ss_pred ChhHHHHHHHcCCCcEEEEEeCCHHHHHHhccc
Q psy2380 255 GGHSCKILERLGKKGRLIAIDKDTESVSLGNKI 287 (733)
Q Consensus 255 Gghs~~il~~~~~~~~l~~~D~D~~a~~~a~~l 287 (733)
|-.+..+++..+ ++++++|.+++-++.++++
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 444566777764 8999999999999988776
No 416
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.20 E-value=7.3e+02 Score=25.02 Aligned_cols=17 Identities=18% Similarity=0.045 Sum_probs=8.3
Q ss_pred HhHHHHHHHHHHHHHHH
Q psy2380 130 AHSGLALSIGLGACLHA 146 (733)
Q Consensus 130 Gi~GaalAt~is~~v~~ 146 (733)
|+..+.+.+.++.++..
T Consensus 112 gi~tli~~~i~~G~~~~ 128 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFY 128 (206)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 55555554444443333
No 417
>PF13470 PIN_3: PIN domain
Probab=21.17 E-value=74 Score=28.63 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.3
Q ss_pred HHHHhhhCCCcEEEEccCC
Q psy2380 681 LLTDAINEGVTAYISGEIS 699 (733)
Q Consensus 681 ~i~~a~~~g~D~~ITGd~~ 699 (733)
++..|...+||++||||.|
T Consensus 101 ~la~A~~~~ad~iVT~D~k 119 (119)
T PF13470_consen 101 VLAAAIAAKADYIVTGDKK 119 (119)
T ss_pred HHHHHHHcCCCEEEeCCCC
Confidence 5777788899999999975
No 418
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=21.15 E-value=81 Score=33.15 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhccccCCeEEEEec
Q psy2380 434 ELKNLSIALKIGFKKLNIKGRIVVISF 460 (733)
Q Consensus 434 El~~l~~~l~~~~~~l~~gg~l~visf 460 (733)
+--.|+..++.+..+|||||++++|.-
T Consensus 145 ~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 145 ITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred hcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 334588999999999999999998854
No 419
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=20.79 E-value=1.2e+02 Score=29.30 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=39.4
Q ss_pred EEEeCCHHHHHHhc-ccC------CCcEEEEccCccchHHHHHhCCCCcccEEEEcCCCCccccCCCCCCc
Q psy2380 272 IAIDKDTESVSLGN-KIT------DSRFSIIHNCFTELDIILKKYNIKKIDGILFDLGISSNQINNELRGF 335 (733)
Q Consensus 272 ~~~D~D~~a~~~a~-~l~------~~r~~~~~~~f~~~~~~l~~~~~~~~dgil~DLGvss~q~~~~~rGf 335 (733)
.|+|..++.++.|+ |.. .+++++++++..++. ..-+++|.|+..+|. +.+.|+.+.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD~v~~~~~l--~~~~d~~~~l 64 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-----FDDCEFDAVTMGYGL--RNVVDRLRAM 64 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-----CCCCCeeEEEecchh--hcCCCHHHHH
Confidence 38999999999983 432 247899999887763 122479999987665 4445555444
No 420
>PRK04457 spermidine synthase; Provisional
Probab=20.74 E-value=98 Score=32.68 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=19.8
Q ss_pred HHHHHHHHhccccCCeEEEEeccc
Q psy2380 439 SIALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 439 ~~~l~~~~~~l~~gg~l~visfhS 462 (733)
..+++.+.+.|+|||++++-.+++
T Consensus 157 ~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCC
Confidence 588899999999999999854443
No 421
>PRK05717 oxidoreductase; Validated
Probab=20.73 E-value=4.7e+02 Score=26.57 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=51.1
Q ss_pred CCEEEEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccCCCcEEEEccCccchHHH---HHhC--CCCcccE
Q psy2380 244 NGIYIDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKITDSRFSIIHNCFTELDII---LKKY--NIKKIDG 316 (733)
Q Consensus 244 ~~~~vD~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~~~r~~~~~~~f~~~~~~---l~~~--~~~~~dg 316 (733)
+++++ .|=|.||=-.++.+.+. .+.+|+.+|++++..+.. +.+ ++++.++..+..+.+++ +++. ..+++|+
T Consensus 10 ~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 87 (255)
T PRK05717 10 GRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA 87 (255)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45444 66666666666666653 456999999987654443 333 35678888877765432 2221 1246899
Q ss_pred EEEcCCCCcc
Q psy2380 317 ILFDLGISSN 326 (733)
Q Consensus 317 il~DLGvss~ 326 (733)
++..=|++..
T Consensus 88 li~~ag~~~~ 97 (255)
T PRK05717 88 LVCNAAIADP 97 (255)
T ss_pred EEECCCcccC
Confidence 9999887643
No 422
>PRK08226 short chain dehydrogenase; Provisional
Probab=20.64 E-value=4.4e+02 Score=26.89 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=46.3
Q ss_pred EccCCChhHHHHHHHc-CCCcEEEEEeCCHHHHHHhcccC--CCcEEEEccCccchHH---HHHhC--CCCcccEEEEcC
Q psy2380 250 ATFGQGGHSCKILERL-GKKGRLIAIDKDTESVSLGNKIT--DSRFSIIHNCFTELDI---ILKKY--NIKKIDGILFDL 321 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~-~~~~~l~~~D~D~~a~~~a~~l~--~~r~~~~~~~f~~~~~---~l~~~--~~~~~dgil~DL 321 (733)
.|=|.||=-.++.+.+ ..+.+|+.+|++++..+.++++. ..++.++..+..+..+ .+++. ...++|+++.+=
T Consensus 11 ItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~a 90 (263)
T PRK08226 11 ITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNA 90 (263)
T ss_pred EeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3444444444444443 24678999999987555444442 4567788887776543 33321 124789999988
Q ss_pred CCCc
Q psy2380 322 GISS 325 (733)
Q Consensus 322 Gvss 325 (733)
|++.
T Consensus 91 g~~~ 94 (263)
T PRK08226 91 GVCR 94 (263)
T ss_pred CcCC
Confidence 8653
No 423
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=20.63 E-value=60 Score=29.48 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.8
Q ss_pred HHHHHHHhccccCCeEEEEeccc
Q psy2380 440 IALKIGFKKLNIKGRIVVISFHS 462 (733)
Q Consensus 440 ~~l~~~~~~l~~gg~l~visfhS 462 (733)
..++.+.++|++||+++++.+++
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 46778889999999999999998
No 424
>PRK06500 short chain dehydrogenase; Provisional
Probab=20.60 E-value=3e+02 Score=27.69 Aligned_cols=76 Identities=12% Similarity=0.227 Sum_probs=49.4
Q ss_pred EEEccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccCCCcEEEEccCccchHH---HHHhC--CCCcccEEEEc
Q psy2380 248 IDATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKITDSRFSIIHNCFTELDI---ILKKY--NIKKIDGILFD 320 (733)
Q Consensus 248 vD~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~~~r~~~~~~~f~~~~~---~l~~~--~~~~~dgil~D 320 (733)
+=.|=|.||--.++.+.+. .+.+|+++|++++.++.. +++ +.++..++.+..+..+ .++.. ..+++|+++..
T Consensus 9 vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 87 (249)
T PRK06500 9 ALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-GESALVIRADAGDVAAQKALAQALAEAFGRLDAVFIN 87 (249)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 4457777888787777653 356999999998776654 333 3467777776665443 22211 12468999988
Q ss_pred CCCC
Q psy2380 321 LGIS 324 (733)
Q Consensus 321 LGvs 324 (733)
=|++
T Consensus 88 ag~~ 91 (249)
T PRK06500 88 AGVA 91 (249)
T ss_pred CCCC
Confidence 7764
No 425
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.54 E-value=2.8e+02 Score=28.78 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=51.6
Q ss_pred EccCCChhHHHHHHHcC-CCcEEEEEeCCHHHHHHh-cccC--CCcEEEEccCccchHHH---HHhC--CCCcccEEEEc
Q psy2380 250 ATFGQGGHSCKILERLG-KKGRLIAIDKDTESVSLG-NKIT--DSRFSIIHNCFTELDII---LKKY--NIKKIDGILFD 320 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~~-~~~~l~~~D~D~~a~~~a-~~l~--~~r~~~~~~~f~~~~~~---l~~~--~~~~~dgil~D 320 (733)
.|=|.||=-+++.+++. .+.+|+.+|++++..+.. +++. +.++.+++.+..+.+++ +++. ..+++|+++..
T Consensus 15 VtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ 94 (278)
T PRK08277 15 ITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCDILING 94 (278)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 46677777777777653 456999999998776654 4443 35788888887765432 3221 12479999999
Q ss_pred CCCCc
Q psy2380 321 LGISS 325 (733)
Q Consensus 321 LGvss 325 (733)
=|+.+
T Consensus 95 ag~~~ 99 (278)
T PRK08277 95 AGGNH 99 (278)
T ss_pred CCCCC
Confidence 88754
No 426
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.51 E-value=3.3e+02 Score=31.02 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=81.5
Q ss_pred EEeCCHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEecCCCCCCCCCCHHHHHHHHhccCc
Q psy2380 535 GVTASLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSC 614 (733)
Q Consensus 535 ald~t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~ 614 (733)
+-+.|.+-++++-+..+|+++. |.. . +..+.+++ +.||..+..+.++.....+-.-..+++.+|.+.
T Consensus 221 ~gg~t~eei~~~~~A~lniv~~--~~~-~--------~~a~~Lee--~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~ 287 (432)
T TIGR01285 221 QGGTTLEQIRQIGQSCCTLAIG--ESM-R--------RAASLLAD--RCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAV 287 (432)
T ss_pred CCCCcHHHHHhhccCcEEEEEC--hhH-H--------HHHHHHHH--HHCCCeEecCCCcChHHHHHHHHHHHHHHCCCc
Confidence 3467888888888887777763 321 1 12233322 678888877777665432222334566666542
Q ss_pred cccccc--------------cCccc-eeeeecccccccCCCCCHHHHHHHHHhHcCCCcEEeC--CCCCc---eeEEEEe
Q psy2380 615 TRRFSK--------------NNIGW-IGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG--DLNKK---IYEIGWC 674 (733)
Q Consensus 615 ~~~~~~--------------~~~G~-ig~~~~~~~~~l~~~~s~~el~~~lk~~l~~~~v~~~--~~~~~---v~rVai~ 674 (733)
.+.++. .--|+ +.- .-++...-.+++.+. .+|...+.+. +..+. +..=.+.
T Consensus 288 ~~~~~~~r~~~~~~l~~~~~~l~Gkrvai--------~~~~~~~~~l~~~l~-elGm~v~~~~~~~~~~~~~~~~~~~~~ 358 (432)
T TIGR01285 288 PERFERQRRQLQDAMLDTHFFLGGKKVAI--------AAEPDLLAAWATFFT-SMGAQIVAAVTTTGSPLLQKLPVETVV 358 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCEEEE--------EcCHHHHHHHHHHHH-HCCCEEEEEEeCCCCHHHHhCCcCcEE
Confidence 211110 00121 111 122334456666665 4787654442 21111 1000122
Q ss_pred eCCchhHHHHhhhCCCcEEEEccCChhHHHHHHHCCCeEEEeC
Q psy2380 675 TGAAQNLLTDAINEGVTAYISGEISESTVYISRESGVAYFAAG 717 (733)
Q Consensus 675 ~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~A~~~g~~li~~g 717 (733)
.+-..++-+.+.+.++|++|++ .|.-..|.+.|+.++.+|
T Consensus 359 ~~D~~~l~~~i~~~~~dliig~---s~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 359 IGDLEDLEDLACAAGADLLITN---SHGRALAQRLALPLVRAG 398 (432)
T ss_pred eCCHHHHHHHHhhcCCCEEEEC---cchHHHHHHcCCCEEEec
Confidence 3333344555566789999977 344566788898888443
No 427
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.47 E-value=77 Score=33.03 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHH
Q psy2380 437 NLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFI 472 (733)
Q Consensus 437 ~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~ 472 (733)
+.+.+++.+.++|+|||+++++ |++-+....++.+
T Consensus 127 ~~~~~l~~~~~~LkpgG~l~i~-~~n~~~~~~~~~~ 161 (255)
T PRK11036 127 DPKSVLQTLWSVLRPGGALSLM-FYNANGLLMHNMV 161 (255)
T ss_pred CHHHHHHHHHHHcCCCeEEEEE-EECccHHHHHHHH
Confidence 3457899999999999999865 4444444444443
No 428
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=20.42 E-value=1.5e+02 Score=31.45 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHhccccCCeEEEEeccchhhhHHHHHHH
Q psy2380 432 NQELKNLSIALKIGFKKLNIKGRIVVISFHSLEDRIVKNFIN 473 (733)
Q Consensus 432 N~El~~l~~~l~~~~~~l~~gg~l~visfhSlEdr~vk~~~~ 473 (733)
++-++..+..++.+.++|+|||++++-.-++-.+. |++.++
T Consensus 217 ~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~-~~~~~~ 257 (284)
T TIGR00536 217 DDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKS-LKELLR 257 (284)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH-HHHHHH
Confidence 45678899999999999999999988776666665 455555
No 429
>PRK05599 hypothetical protein; Provisional
Probab=20.19 E-value=3.6e+02 Score=27.55 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred EccCCChhHHHHHHHcCCCcEEEEEeCCHHHHHHh-cccC---CCcEEEEccCccchH---HHHHhC--CCCcccEEEEc
Q psy2380 250 ATFGQGGHSCKILERLGKKGRLIAIDKDTESVSLG-NKIT---DSRFSIIHNCFTELD---IILKKY--NIKKIDGILFD 320 (733)
Q Consensus 250 ~T~G~Gghs~~il~~~~~~~~l~~~D~D~~a~~~a-~~l~---~~r~~~~~~~f~~~~---~~l~~~--~~~~~dgil~D 320 (733)
.|=|.+|=-+++.+.+..+.+|+..+|+++.++.. ++++ .+++..+..+..+.+ +.+++. ..+++|.++.+
T Consensus 5 ItGas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 84 (246)
T PRK05599 5 ILGGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVA 84 (246)
T ss_pred EEeCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 45566777778887776788999999999887765 4553 235667766655543 333221 12579999998
Q ss_pred CCCCc
Q psy2380 321 LGISS 325 (733)
Q Consensus 321 LGvss 325 (733)
-|+..
T Consensus 85 ag~~~ 89 (246)
T PRK05599 85 FGILG 89 (246)
T ss_pred cCcCC
Confidence 88753
No 430
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=20.18 E-value=1.3e+02 Score=31.14 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=46.9
Q ss_pred CCCccccCCCCCCCCHHHHHh------------ccCHHHHHHHHHHcCCCchHHHHHHHHHHHhccCCCC-CH-------
Q psy2380 340 DGPLDMRMDITRGISASKWLA------------NATEFNIKKVIQDYGEERFAKKIAKEIVHYRSITPIT-RT------- 399 (733)
Q Consensus 340 ~~pLDmRm~~~~~~~a~~~~n------------~~~~~~l~~i~~~ygee~~~~~ia~~i~~~r~~~~~~-tt------- 399 (733)
|.-+++|.+.+ .+..|+|. ..|+++|.++|.+ ..-.+||..|++.= .|+ |+
T Consensus 26 ~~a~~~R~g~~--vdleevLa~~~Vf~da~KG~~Ase~dL~k~FgT----td~~eI~~eIl~kG---eiQlTaeqR~~m~ 96 (234)
T COG1500 26 NKALEYREGKE--VDLEEVLATETVFKDASKGEKASEEDLKKAFGT----TDPDEIAEEILKKG---EIQLTAEQRREML 96 (234)
T ss_pred hHHHHHHcCCC--CCHHHHHhHHHHHHhccccccCCHHHHHHHhCC----CCHHHHHHHHHhcC---ceeccHHHHHHHH
Confidence 45566676653 33334432 3578899988866 55778888888643 333 33
Q ss_pred ----HHHHHHHH-hhcCCCCCCCCchhHHHHHH
Q psy2380 400 ----KQLVEIIL-KSIRGNKRYKNPATRTFQAI 427 (733)
Q Consensus 400 ----~~l~~~i~-~~~~~~~~~~~~~~~~Fqal 427 (733)
.+..++|. +++.+..+.-||.+|+=+||
T Consensus 97 e~k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Am 129 (234)
T COG1500 97 EEKKRQIINIISRNAIDPQTKAPHPPARIEKAM 129 (234)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Confidence 34444443 33433333579999886665
No 431
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.11 E-value=6.2e+02 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=34.3
Q ss_pred CHHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHh-cCCeEEEecCCCC
Q psy2380 539 SLDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLII-NKINLYAYHLPLD 595 (733)
Q Consensus 539 t~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~-~~I~vy~~Ht~lD 595 (733)
+.+..+.|.+.|+|-+....|.+|.+. .+...+.+..+.+ -++.++-+|-|.-
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~----~~~~~~~~~~ia~~~~~pi~iYn~P~~ 134 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPS----QEGIVAHFKAVADASDLPVILYNIPGR 134 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCC----HHHHHHHHHHHHhcCCCCEEEEECccc
Confidence 344555677899999999999887632 1222333444444 4788888877653
No 432
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.01 E-value=3.2e+02 Score=28.01 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=38.4
Q ss_pred EEEEEEeCC-HHHHHHHHHCCCCEEEeccCCCccCCcccccChHHHHHHHHHhcCCeEEEec
Q psy2380 531 VIVTGVTAS-LDLIKTAVDMNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYH 591 (733)
Q Consensus 531 ~I~~ald~t-~~vi~~Ai~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~H 591 (733)
++++|-|.. ++..++...+|+|+|+. |.-|..................++|++.++++-
T Consensus 143 g~~IC~D~~~pe~~~~~~~~ga~lil~--ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n 202 (255)
T cd07581 143 GLATCYDLRFPELARALALAGADVIVV--PAAWVAGPGKEEHWETLLRARALENTVYVAAAG 202 (255)
T ss_pred EEEEEecccCHHHHHHHHHCCCcEEEE--CCcccCCCCchHHHHHHHHHHHHHhCCEEEEEc
Confidence 588999965 78888889999999996 443432111001111233456778999888874
Done!