Query psy2381
Match_columns 350
No_of_seqs 198 out of 1796
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:34:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02627 glutamyl-tRNA synthet 100.0 3E-109 7E-114 834.5 35.9 334 2-337 44-388 (535)
2 PRK12558 glutamyl-tRNA synthet 100.0 2E-106 4E-111 804.8 33.9 328 3-334 2-331 (445)
3 PRK12410 glutamylglutaminyl-tR 100.0 2E-106 4E-111 801.8 32.8 320 5-330 1-321 (433)
4 PRK14895 gltX glutamyl-tRNA sy 100.0 8E-105 2E-109 801.6 36.4 330 2-335 3-332 (513)
5 KOG1149|consensus 100.0 5E-106 1E-110 774.9 26.2 331 3-336 33-380 (524)
6 PRK01406 gltX glutamyl-tRNA sy 100.0 1E-102 2E-107 789.4 37.0 333 1-335 2-344 (476)
7 TIGR00464 gltX_bact glutamyl-t 100.0 5E-100 1E-104 769.3 36.4 332 3-336 1-335 (470)
8 COG0008 GlnS Glutamyl- and glu 100.0 1.8E-98 4E-103 751.6 29.9 329 4-336 10-345 (472)
9 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1.8E-95 4E-100 693.9 31.2 292 1-306 3-298 (299)
10 PF00749 tRNA-synt_1c: tRNA sy 100.0 2.2E-97 5E-102 716.3 15.3 307 3-311 1-314 (314)
11 TIGR03838 queuosine_YadB gluta 100.0 1.8E-91 3.9E-96 659.5 28.3 270 4-288 1-272 (272)
12 cd00418 GlxRS_core catalytic c 100.0 2.2E-80 4.7E-85 570.5 25.0 228 3-318 1-229 (230)
13 PTZ00402 glutamyl-tRNA synthet 100.0 5.5E-80 1.2E-84 627.7 27.9 275 3-324 52-363 (601)
14 PLN03233 putative glutamate-tR 100.0 7E-80 1.5E-84 621.1 27.0 275 2-324 10-321 (523)
15 TIGR00440 glnS glutaminyl-tRNA 100.0 4.1E-80 8.9E-85 623.4 24.3 300 4-318 1-337 (522)
16 PRK05347 glutaminyl-tRNA synth 100.0 2.5E-78 5.5E-83 611.6 27.9 277 2-324 28-345 (554)
17 PLN02859 glutamine-tRNA ligase 100.0 1.7E-77 3.7E-82 622.2 25.1 294 2-313 263-588 (788)
18 TIGR00463 gltX_arch glutamyl-t 100.0 9.1E-77 2E-81 604.1 26.7 276 2-324 92-404 (560)
19 PRK04156 gltX glutamyl-tRNA sy 100.0 1.7E-76 3.6E-81 602.9 26.5 274 3-324 101-413 (567)
20 PLN02907 glutamate-tRNA ligase 100.0 5.1E-76 1.1E-80 617.2 27.0 274 3-324 213-523 (722)
21 cd00808 GluRS_core catalytic c 100.0 9.5E-75 2.1E-79 536.7 25.5 229 3-318 1-238 (239)
22 PRK14703 glutaminyl-tRNA synth 100.0 1.1E-74 2.5E-79 606.3 27.3 276 3-324 31-348 (771)
23 cd00807 GlnRS_core catalytic c 100.0 2.5E-72 5.3E-77 517.6 23.1 221 3-322 1-237 (238)
24 PTZ00437 glutaminyl-tRNA synth 100.0 5.1E-72 1.1E-76 565.2 25.4 285 3-325 51-362 (574)
25 cd09287 GluRS_non_core catalyt 100.0 4.9E-69 1.1E-73 497.2 22.3 221 3-322 1-239 (240)
26 KOG1147|consensus 100.0 2E-53 4.2E-58 418.3 16.2 278 1-326 198-512 (712)
27 KOG1148|consensus 100.0 3.4E-48 7.3E-53 384.5 13.8 293 2-310 247-569 (764)
28 cd00671 ArgRS_core catalytic c 99.9 6.8E-26 1.5E-30 207.6 13.4 181 8-248 7-212 (212)
29 COG0215 CysS Cysteinyl-tRNA sy 99.9 1.2E-25 2.6E-30 223.1 12.5 231 9-277 29-303 (464)
30 TIGR00435 cysS cysteinyl-tRNA 99.9 7.9E-25 1.7E-29 221.9 17.4 230 8-275 27-298 (465)
31 PRK00260 cysS cysteinyl-tRNA s 99.9 9.2E-25 2E-29 221.5 17.8 223 8-273 29-297 (463)
32 PRK14536 cysS cysteinyl-tRNA s 99.9 2E-24 4.2E-29 218.7 16.7 235 9-287 30-323 (490)
33 PRK14534 cysS cysteinyl-tRNA s 99.9 2.5E-24 5.5E-29 217.1 16.4 235 9-287 28-323 (481)
34 PF01406 tRNA-synt_1e: tRNA sy 99.9 7E-26 1.5E-30 214.9 4.2 230 9-276 15-286 (300)
35 PLN02946 cysteine-tRNA ligase 99.9 2.1E-24 4.6E-29 220.8 12.9 226 9-276 87-357 (557)
36 PRK12418 cysteinyl-tRNA synthe 99.9 5.7E-24 1.2E-28 209.7 12.9 229 9-275 16-295 (384)
37 PRK14535 cysS cysteinyl-tRNA s 99.9 4.3E-23 9.3E-28 213.1 18.0 222 9-275 255-541 (699)
38 TIGR03447 mycothiol_MshC cyste 99.9 2.8E-23 6E-28 205.9 11.7 237 9-275 43-322 (411)
39 PRK01611 argS arginyl-tRNA syn 99.9 3.9E-22 8.4E-27 204.6 14.1 199 3-262 112-343 (507)
40 PTZ00399 cysteinyl-tRNA-synthe 99.8 3.4E-20 7.4E-25 194.4 15.7 238 9-276 67-349 (651)
41 KOG2007|consensus 99.8 1.7E-20 3.7E-25 185.2 10.1 230 9-277 62-340 (586)
42 PRK11893 methionyl-tRNA synthe 99.7 1.6E-16 3.5E-21 162.9 15.6 257 4-273 4-330 (511)
43 cd00802 class_I_aaRS_core cata 99.7 4.3E-17 9.4E-22 140.1 7.2 134 5-247 1-143 (143)
44 cd00668 Ile_Leu_Val_MetRS_core 99.6 2.2E-15 4.7E-20 145.7 13.0 239 6-273 5-304 (312)
45 cd00814 MetRS_core catalytic c 99.6 8.9E-14 1.9E-18 135.0 15.9 93 5-98 4-116 (319)
46 PRK00750 lysK lysyl-tRNA synth 99.6 3.2E-13 7E-18 138.7 20.8 232 4-271 25-309 (510)
47 COG0143 MetG Methionyl-tRNA sy 99.6 8E-14 1.7E-18 143.3 16.0 265 4-290 8-380 (558)
48 TIGR00398 metG methionyl-tRNA 99.5 7.2E-14 1.6E-18 144.3 14.4 265 4-273 2-358 (530)
49 COG0018 ArgS Arginyl-tRNA synt 99.5 2.2E-13 4.9E-18 140.9 17.0 200 52-314 239-453 (577)
50 TIGR00456 argS arginyl-tRNA sy 99.5 1.3E-13 2.8E-18 143.5 15.3 147 51-258 234-389 (566)
51 PLN02286 arginine-tRNA ligase 99.5 3.2E-13 7E-18 140.6 17.7 190 55-312 242-453 (576)
52 PRK12267 methionyl-tRNA synthe 99.5 1.6E-13 3.4E-18 145.0 14.4 268 4-288 7-344 (648)
53 PRK12451 arginyl-tRNA syntheta 99.5 2.4E-13 5.2E-18 141.3 14.7 195 52-313 234-443 (562)
54 PRK00133 metG methionyl-tRNA s 99.5 3.4E-13 7.5E-18 143.0 15.8 101 4-105 5-130 (673)
55 cd00674 LysRS_core_class_I cat 99.5 2.8E-12 6.1E-17 125.8 21.0 239 4-273 21-306 (353)
56 cd00672 CysRS_core catalytic c 99.5 2.3E-13 5E-18 125.0 12.5 84 186-274 113-206 (213)
57 PRK12268 methionyl-tRNA synthe 99.5 7E-13 1.5E-17 137.7 15.5 94 4-98 6-120 (556)
58 cd00818 IleRS_core catalytic c 99.5 2.3E-13 5.1E-18 133.1 11.1 91 8-98 8-136 (338)
59 PLN02610 probable methionyl-tR 99.5 5.9E-13 1.3E-17 142.9 14.3 280 4-289 20-395 (801)
60 PLN02224 methionine-tRNA ligas 99.4 3.2E-12 6.9E-17 133.7 18.2 250 4-273 72-397 (616)
61 cd00812 LeuRS_core catalytic c 99.4 4.2E-13 9.1E-18 130.0 10.6 93 5-98 4-118 (314)
62 cd00806 TrpRS_core catalytic c 99.4 1.3E-11 2.8E-16 117.9 20.0 242 11-333 7-277 (280)
63 cd00817 ValRS_core catalytic c 99.4 1.8E-12 3.9E-17 128.9 14.4 93 6-98 6-135 (382)
64 PF09334 tRNA-synt_1g: tRNA sy 99.4 3E-13 6.6E-18 134.7 4.6 272 5-292 3-376 (391)
65 PF00750 tRNA-synt_1d: tRNA sy 99.4 3.8E-12 8.3E-17 125.4 12.0 87 172-258 207-305 (354)
66 TIGR00467 lysS_arch lysyl-tRNA 99.2 2.9E-09 6.3E-14 109.4 21.2 233 4-271 20-303 (515)
67 PRK13208 valS valyl-tRNA synth 99.0 1.2E-08 2.7E-13 110.4 17.1 89 9-98 46-169 (800)
68 PF01921 tRNA-synt_1f: tRNA sy 98.9 2.4E-09 5.2E-14 104.7 9.0 235 4-271 25-311 (360)
69 TIGR00422 valS valyl-tRNA synt 98.9 6E-08 1.3E-12 105.9 20.0 90 8-98 40-167 (861)
70 TIGR00233 trpS tryptophanyl-tR 98.8 1.3E-07 2.9E-12 92.3 17.1 192 10-272 9-218 (328)
71 PRK05729 valS valyl-tRNA synth 98.8 4.8E-07 1E-11 99.0 21.3 89 9-98 44-170 (874)
72 PRK12556 tryptophanyl-tRNA syn 98.8 4.2E-07 9.1E-12 88.9 17.3 199 10-271 10-226 (332)
73 PRK12285 tryptophanyl-tRNA syn 98.7 9E-07 2E-11 87.7 19.5 188 11-271 74-276 (368)
74 cd00395 Tyr_Trp_RS_core cataly 98.6 1.8E-06 4E-11 82.2 17.6 234 11-331 7-268 (273)
75 COG0180 TrpS Tryptophanyl-tRNA 98.6 6.9E-07 1.5E-11 86.2 13.5 197 9-273 11-225 (314)
76 PRK12282 tryptophanyl-tRNA syn 98.6 1.6E-06 3.5E-11 84.8 16.0 194 11-271 10-220 (333)
77 cd00805 TyrRS_core catalytic c 98.6 2.6E-06 5.7E-11 81.0 16.6 239 11-333 8-266 (269)
78 PRK08560 tyrosyl-tRNA syntheta 98.5 8.6E-06 1.9E-10 79.7 17.8 249 9-330 36-306 (329)
79 PRK12284 tryptophanyl-tRNA syn 98.5 6.9E-06 1.5E-10 82.4 17.1 200 8-271 7-226 (431)
80 PRK12283 tryptophanyl-tRNA syn 98.4 9.7E-06 2.1E-10 80.7 16.8 90 11-109 10-107 (398)
81 KOG0436|consensus 98.4 2E-06 4.3E-11 84.8 11.1 87 11-98 49-155 (578)
82 PRK13354 tyrosyl-tRNA syntheta 98.4 3E-05 6.4E-10 78.1 18.3 114 198-331 186-300 (410)
83 COG1384 LysS Lysyl-tRNA synthe 98.3 2E-05 4.4E-10 79.9 16.5 233 7-271 24-306 (521)
84 PRK05912 tyrosyl-tRNA syntheta 98.3 1.4E-05 3E-10 80.4 14.5 116 198-333 188-304 (408)
85 PTZ00126 tyrosyl-tRNA syntheta 98.1 0.00027 5.8E-09 70.6 19.7 85 183-271 195-282 (383)
86 PLN02486 aminoacyl-tRNA ligase 98.0 0.00074 1.6E-08 67.4 20.6 70 11-80 81-159 (383)
87 PRK00390 leuS leucyl-tRNA synt 98.0 7.5E-06 1.6E-10 88.9 7.1 91 7-98 38-150 (805)
88 TIGR00396 leuS_bact leucyl-tRN 98.0 8.1E-06 1.8E-10 89.0 7.2 93 5-98 33-147 (842)
89 PRK00927 tryptophanyl-tRNA syn 98.0 5.2E-05 1.1E-09 74.3 11.3 190 11-271 9-220 (333)
90 PLN02886 aminoacyl-tRNA ligase 97.9 2.8E-05 6E-10 77.4 7.7 88 11-107 54-148 (389)
91 PLN02563 aminoacyl-tRNA ligase 97.9 2.3E-05 4.9E-10 86.4 7.0 92 6-98 115-229 (963)
92 PF00579 tRNA-synt_1b: tRNA sy 97.8 7.9E-05 1.7E-09 71.5 8.2 194 11-271 13-223 (292)
93 PTZ00419 valyl-tRNA synthetase 97.8 4.9E-05 1.1E-09 84.5 7.4 93 5-98 64-195 (995)
94 TIGR00392 ileS isoleucyl-tRNA 97.7 7.7E-05 1.7E-09 81.8 7.6 93 5-98 40-171 (861)
95 PLN02943 aminoacyl-tRNA ligase 97.7 0.00011 2.4E-09 81.2 8.1 92 6-98 93-222 (958)
96 PRK05743 ileS isoleucyl-tRNA s 97.6 9.2E-05 2E-09 81.6 6.8 92 6-98 54-180 (912)
97 PLN02843 isoleucyl-tRNA synthe 97.6 8.5E-05 1.8E-09 82.3 6.6 91 7-98 38-164 (974)
98 PRK14900 valS valyl-tRNA synth 97.6 0.00012 2.6E-09 81.8 7.3 90 8-98 55-183 (1052)
99 PLN02381 valyl-tRNA synthetase 97.6 0.00012 2.7E-09 81.7 6.9 93 6-99 133-264 (1066)
100 COG0495 LeuS Leucyl-tRNA synth 97.6 8.9E-05 1.9E-09 79.8 5.4 91 8-98 41-152 (814)
101 PRK06039 ileS isoleucyl-tRNA s 97.5 0.00019 4.2E-09 79.6 8.0 90 8-98 48-176 (975)
102 PTZ00427 isoleucine-tRNA ligas 97.5 0.00017 3.7E-09 81.2 7.2 90 8-98 109-237 (1205)
103 PF00133 tRNA-synt_1: tRNA syn 97.5 0.00026 5.6E-09 74.7 7.2 75 198-273 514-592 (601)
104 PLN02882 aminoacyl-tRNA ligase 97.4 0.00027 5.9E-09 79.5 7.7 90 8-98 45-173 (1159)
105 TIGR00395 leuS_arch leucyl-tRN 97.4 0.00018 3.9E-09 79.5 5.7 70 201-273 576-651 (938)
106 PTZ00348 tyrosyl-tRNA syntheta 97.4 0.027 5.8E-07 60.2 21.2 83 183-271 160-247 (682)
107 PRK13804 ileS isoleucyl-tRNA s 97.3 0.00058 1.3E-08 75.7 7.4 91 7-98 60-188 (961)
108 KOG0435|consensus 97.1 0.00041 8.9E-09 72.3 3.8 95 4-98 60-175 (876)
109 COG0525 ValS Valyl-tRNA synthe 97.1 0.0019 4.1E-08 70.0 8.5 89 9-98 41-167 (877)
110 PLN02959 aminoacyl-tRNA ligase 96.8 0.0027 5.8E-08 71.3 7.0 43 229-273 706-749 (1084)
111 TIGR00395 leuS_arch leucyl-tRN 96.7 0.0064 1.4E-07 67.5 9.8 93 5-98 29-167 (938)
112 TIGR00392 ileS isoleucyl-tRNA 96.7 0.0071 1.5E-07 66.5 9.3 73 198-272 564-641 (861)
113 KOG2713|consensus 96.6 0.003 6.5E-08 59.9 5.1 137 9-208 19-165 (347)
114 TIGR00234 tyrS tyrosyl-tRNA sy 96.6 0.014 3E-07 58.3 10.1 65 184-248 163-227 (377)
115 PF00133 tRNA-synt_1: tRNA syn 96.6 0.0056 1.2E-07 64.7 7.6 90 8-98 30-158 (601)
116 PRK06039 ileS isoleucyl-tRNA s 96.5 0.0098 2.1E-07 66.3 9.1 77 197-274 544-624 (975)
117 KOG0432|consensus 96.4 0.006 1.3E-07 65.5 6.5 90 9-98 83-210 (995)
118 PRK12300 leuS leucyl-tRNA synt 96.4 0.0083 1.8E-07 66.3 7.5 71 200-273 532-608 (897)
119 PLN02882 aminoacyl-tRNA ligase 96.3 0.014 3.1E-07 65.9 9.2 74 199-273 568-645 (1159)
120 PRK05743 ileS isoleucyl-tRNA s 96.3 0.019 4.1E-07 63.6 9.8 73 197-271 544-621 (912)
121 COG0162 TyrS Tyrosyl-tRNA synt 96.1 0.0086 1.9E-07 60.1 5.3 64 186-249 168-231 (401)
122 COG0525 ValS Valyl-tRNA synthe 95.7 0.047 1E-06 59.4 9.4 86 200-287 480-569 (877)
123 PRK13804 ileS isoleucyl-tRNA s 95.3 0.07 1.5E-06 59.5 9.3 72 199-272 584-660 (961)
124 PLN02843 isoleucyl-tRNA synthe 95.2 0.059 1.3E-06 60.2 8.2 74 200-274 566-652 (974)
125 PTZ00427 isoleucine-tRNA ligas 95.1 0.075 1.6E-06 60.4 8.7 74 199-273 674-751 (1205)
126 PLN02943 aminoacyl-tRNA ligase 94.8 0.081 1.8E-06 59.0 7.9 69 199-273 537-614 (958)
127 PRK14900 valS valyl-tRNA synth 94.8 0.074 1.6E-06 59.9 7.6 72 200-273 493-569 (1052)
128 KOG1195|consensus 94.7 0.15 3.4E-06 52.0 8.9 93 172-271 293-395 (567)
129 PLN02959 aminoacyl-tRNA ligase 94.6 0.064 1.4E-06 60.5 6.6 30 5-34 48-78 (1084)
130 COG0495 LeuS Leucyl-tRNA synth 94.4 0.05 1.1E-06 59.1 4.8 79 194-273 522-610 (814)
131 PRK12300 leuS leucyl-tRNA synt 94.2 0.082 1.8E-06 58.5 6.3 82 16-98 1-128 (897)
132 COG0060 IleS Isoleucyl-tRNA sy 93.7 0.11 2.3E-06 57.3 5.8 90 8-98 56-183 (933)
133 PLN02381 valyl-tRNA synthetase 93.5 0.21 4.6E-06 56.3 7.8 78 197-274 607-724 (1066)
134 TIGR00396 leuS_bact leucyl-tRN 92.7 0.12 2.7E-06 56.8 4.5 77 196-273 518-635 (842)
135 PTZ00419 valyl-tRNA synthetase 92.2 0.21 4.6E-06 56.0 5.6 75 198-273 538-653 (995)
136 PRK00390 leuS leucyl-tRNA synt 92.1 0.21 4.6E-06 54.7 5.4 69 197-273 522-601 (805)
137 PLN02563 aminoacyl-tRNA ligase 91.7 0.21 4.5E-06 55.7 4.8 31 242-273 723-754 (963)
138 COG0060 IleS Isoleucyl-tRNA sy 89.4 0.11 2.5E-06 57.1 0.2 73 200-273 557-633 (933)
139 cd02156 nt_trans nucleotidyl t 89.1 1 2.3E-05 36.2 5.6 38 6-48 2-39 (105)
140 KOG0433|consensus 85.9 3.5 7.5E-05 44.4 8.5 89 11-100 65-189 (937)
141 KOG4426|consensus 77.2 12 0.00026 38.2 8.3 83 175-259 369-465 (656)
142 KOG0432|consensus 77.0 4.1 8.8E-05 44.6 5.3 45 205-249 553-600 (995)
143 KOG0433|consensus 68.1 40 0.00088 36.7 10.0 67 203-270 571-647 (937)
144 KOG1247|consensus 66.7 18 0.0004 36.7 6.8 93 4-96 17-129 (567)
145 KOG0437|consensus 64.8 2 4.3E-05 46.2 -0.2 73 198-275 663-743 (1080)
146 KOG0437|consensus 60.5 14 0.00031 40.0 5.1 60 10-71 53-117 (1080)
147 TIGR00440 glnS glutaminyl-tRNA 59.8 16 0.00035 38.2 5.3 150 162-323 149-315 (522)
148 KOG0434|consensus 55.2 4.8 0.0001 43.1 0.6 88 9-98 46-173 (1070)
149 KOG3349|consensus 48.8 12 0.00027 32.8 2.0 22 82-103 115-136 (170)
150 KOG2145|consensus 43.9 22 0.00048 34.4 3.1 59 13-71 96-161 (397)
151 KOG2623|consensus 43.4 1.5E+02 0.0033 30.1 8.8 118 184-321 209-333 (467)
152 PRK13793 nicotinamide-nucleoti 40.8 46 0.00099 30.3 4.5 58 4-89 9-66 (196)
153 PF00627 UBA: UBA/TS-N domain; 39.6 70 0.0015 20.5 4.2 23 252-274 6-28 (37)
154 PF08671 SinI: Anti-repressor 38.4 46 0.00099 21.0 2.9 20 252-271 9-28 (30)
155 COG4720 Predicted membrane pro 34.9 30 0.00065 30.9 2.3 26 10-35 31-56 (177)
156 KOG1247|consensus 33.8 25 0.00055 35.7 1.8 77 211-289 291-390 (567)
157 PF10096 DUF2334: Uncharacteri 33.2 87 0.0019 29.2 5.3 57 37-94 1-68 (243)
158 KOG0434|consensus 32.7 2.2E+02 0.0047 31.2 8.4 41 229-270 588-629 (1070)
159 PF06971 Put_DNA-bind_N: Putat 31.6 58 0.0012 23.0 2.9 30 77-109 8-37 (50)
160 smart00165 UBA Ubiquitin assoc 31.5 1.3E+02 0.0029 18.9 4.5 23 252-274 5-27 (37)
161 COG2344 AT-rich DNA-binding pr 30.9 54 0.0012 29.9 3.3 30 18-48 92-121 (211)
162 PF03206 NifW: Nitrogen fixati 27.4 1E+02 0.0022 25.3 4.0 51 59-111 15-65 (105)
163 PF13331 DUF4093: Domain of un 26.9 1E+02 0.0022 24.3 3.8 69 258-332 5-75 (87)
164 cd02168 NMNAT_Nudix Nicotinami 26.1 1.9E+02 0.004 25.8 6.0 58 4-70 4-67 (181)
165 PLN02859 glutamine-tRNA ligase 25.0 66 0.0014 35.4 3.3 43 282-325 533-576 (788)
166 PF08892 YqcI_YcgG: YqcI/YcgG 24.6 3.6E+02 0.0077 24.9 7.6 69 3-71 30-105 (219)
167 COG1938 Archaeal enzymes of AT 23.7 4E+02 0.0087 25.1 7.8 61 7-71 145-206 (244)
168 cd06352 PBP1_NPR_GC_like Ligan 23.5 6E+02 0.013 24.4 9.6 96 5-109 114-210 (389)
169 cd06385 PBP1_NPR_A Ligand-bind 23.5 3.8E+02 0.0081 26.3 8.2 100 5-113 120-222 (405)
170 COG1056 NadR Nicotinamide mono 22.0 55 0.0012 29.2 1.7 57 4-69 8-70 (172)
171 PRK14102 nifW nitrogenase stab 21.6 1.6E+02 0.0034 24.2 4.1 44 61-106 17-60 (105)
172 PF13495 Phage_int_SAM_4: Phag 20.5 3.6E+02 0.0077 19.8 6.8 60 252-328 6-67 (85)
173 PRK00114 hslO Hsp33-like chape 20.3 48 0.001 32.0 1.0 21 89-109 228-248 (293)
174 PF01522 Polysacc_deac_1: Poly 20.1 1.7E+02 0.0038 23.0 4.2 57 35-98 5-61 (123)
No 1
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=3.3e-109 Score=834.52 Aligned_cols=334 Identities=39% Similarity=0.732 Sum_probs=320.4
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC--------C
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------P 73 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~--------~ 73 (350)
++|+|||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+ |
T Consensus 44 ~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gp 123 (535)
T PLN02627 44 GPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGP 123 (535)
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred eeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCC
Q psy2381 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPL 151 (350)
Q Consensus 74 ~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~ 151 (350)
|+||+|+++|++++++|+++|+||+||||++++++.|+.+...+.++.|+|+||++ +.+|.. ...|.++++|||+|.
T Consensus 124 y~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l-~~ee~~~~~~~g~~~~iR~k~p~ 202 (535)
T PLN02627 124 YRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATA-SDEEVQAELAKGTPYTYRFRVPK 202 (535)
T ss_pred eeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccC-CHHHHHHHHhCCCCceEEEEcCC
Confidence 99999999999999999999999999999999999998877778889999999999 887633 256899999999998
Q ss_pred CCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEe
Q psy2381 152 YGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H 231 (350)
++.+.|+|.++|++++++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|
T Consensus 203 ~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~H 282 (535)
T PLN02627 203 EGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAH 282 (535)
T ss_pred CCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEE
Confidence 78999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccccCCCCCCCCcccHHHHH
Q psy2381 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (350)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~ 310 (350)
+|+|++.+|+|||||+|++++.+|+++||+|+||+|||++|||+++ +.|+++++||+++|+ +++++++|++||.+||.
T Consensus 283 lpli~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~~F~-l~~v~~s~~~fD~~KL~ 361 (535)
T PLN02627 283 VSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVEKFS-IDRINKSGAVFDSTKLK 361 (535)
T ss_pred ccceeCCCCCccccccCCccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHHhCC-HhhCCCcccccCHHHHH
Confidence 9999999999999999999999999999999999999999999974 578999999999999 99999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhch
Q psy2381 311 WLNNFYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 311 ~~n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
|+|++||+.++.+++.+++.|++.+.+
T Consensus 362 wlN~~yir~l~~~el~~~~~p~l~~~~ 388 (535)
T PLN02627 362 WMNGQHLRLLPEEELVKLVGERWKSAG 388 (535)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999998653
No 2
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-106 Score=804.76 Aligned_cols=328 Identities=39% Similarity=0.612 Sum_probs=315.8
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|||||||||||+||||||||||+||++||++||+|||||||||++|+++++.+.|+++|+||||+||+ +|+||+|++.
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De-~y~QSer~~~ 80 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDR-TFRQSDRFDR 80 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCc-cccHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEEee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
|++++++|+++|+||+||||++++++.|+.+...+.++.|+|+||++ +.+|.. ...|.++++||+++ ++.+.|+|.
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l-~~~~~~~~~~~g~~~~iR~k~~-~~~~~~~D~ 158 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKL-TEEEKAALEAEGRKPHWRFKLD-DEPISWDDL 158 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccC-CHHHHHhHHhcCCCceEEEecC-CCceEEEEE
Confidence 99999999999999999999999999998877778888999999999 877643 25689999999995 578999999
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g 240 (350)
++|++++++.+++||||+|+||.||||||||||||+|||||||||+||++|||+|++||+||||++|.|+|+|+|++.+|
T Consensus 159 i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g 238 (445)
T PRK12558 159 IRGEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG 238 (445)
T ss_pred eeeEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcC
Q psy2381 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSY 320 (350)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~ 320 (350)
+|||||+|+++|.+|+++||+||||+|||++|||++++.+++|++||+++|+ +++++++|++||.+||.|+|++||+.+
T Consensus 239 ~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~F~-l~~~~~~~~~fd~~KL~w~N~~~i~~~ 317 (445)
T PRK12558 239 KGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESFD-LSSFSRAPAKFDPEDLERLNARLLHAL 317 (445)
T ss_pred ccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHhCC-HhhCCCccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998888899999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy2381 321 DDKKLLNLIQPIIK 334 (350)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (350)
+.+++++++.|++.
T Consensus 318 ~~~~l~~~~~~~~~ 331 (445)
T PRK12558 318 PFEAVKDRLAALGI 331 (445)
T ss_pred CHHHHHHHHHHhhc
Confidence 99999999998874
No 3
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-106 Score=801.75 Aligned_cols=320 Identities=38% Similarity=0.660 Sum_probs=307.8
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHHH
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYF 84 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y~ 84 (350)
+|||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+||+ +|+||+|+++|+
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe-~y~QSeR~~~Y~ 79 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK-LVYQSENLKFHR 79 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC-CeehhccHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred HHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeee
Q psy2381 85 EIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK 164 (350)
Q Consensus 85 ~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~ 164 (350)
+++++|+++|+||+||||++++++.|+.+...+.+++|+|+||++ +.+|. ..+|.++++|||+|. +.+.|+|.++|+
T Consensus 80 ~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l-~~~e~-~~~g~~~~iR~k~p~-~~~~f~D~v~G~ 156 (433)
T PRK12410 80 QMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENL-EDDEV-LNCNKPFVVRLKKPN-HTMSFTDAIKGE 156 (433)
T ss_pred HHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCC-CHhHH-HhcCCCeEEEEEcCC-Cceeeeecccee
Confidence 999999999999999999999999998877778889999999999 87764 346899999999995 799999999999
Q ss_pred eecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCC-CceEeeceeecCCCcee
Q psy2381 165 ITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTL-PFYGHLPMVIDSNKVKI 243 (350)
Q Consensus 165 ~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~-P~y~H~pll~~~~g~KL 243 (350)
+++.+.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++ |.|+|+|++++++|+||
T Consensus 157 i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g~KL 236 (433)
T PRK12410 157 VSFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEGKKM 236 (433)
T ss_pred EEeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999986 59999999999999999
Q ss_pred ccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy2381 244 SKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDK 323 (350)
Q Consensus 244 SKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~ 323 (350)
|||+|+++|.+|+++|++|+||+|||++|||+.+ .|+++++||+++|+ ++++++++++||.+||.|+|++||+.++++
T Consensus 237 SKR~~~~~v~~~r~~G~~PeAi~n~l~~lG~~~~-~e~~~~~eli~~F~-~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~ 314 (433)
T PRK12410 237 SKRDNASSVKWLLEQGFLPSAIANYLILLGNKTP-KEIFTLEEAIEWFD-IEKISKSPAKFDLKKLRFINREHLKMLDDE 314 (433)
T ss_pred ecccChhhHHHHHHCCCCHHHHHHHHHHhCCCCc-ccccCHHHHHHhCC-HhhCCCccccCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999865 79999999999999 999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy2381 324 KLLNLIQ 330 (350)
Q Consensus 324 ~~~~~~~ 330 (350)
++++++.
T Consensus 315 ~l~~~~~ 321 (433)
T PRK12410 315 RLSKLLG 321 (433)
T ss_pred HHHHHHh
Confidence 9999884
No 4
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.6e-105 Score=801.59 Aligned_cols=330 Identities=45% Similarity=0.788 Sum_probs=319.3
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+|||+||+||+|++
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~ 82 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNN 82 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeee
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v 161 (350)
+|++++++|+++|+||+||||++++++.|+.+...+.++.|+|+||++ +.++. ..+.++++|||+|..+.+.|+|.+
T Consensus 83 ~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~-~~~~~--~~~~~~~iR~k~p~~~~~~~~D~v 159 (513)
T PRK14895 83 LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDK-DPSIY--PTDIKPVIRLKTPREGSITIHDTL 159 (513)
T ss_pred HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhccc-Chhhh--hcCCCeeEEEEcCCCCceEEEeec
Confidence 999999999999999999999999999998777778888999999998 76642 357889999999987899999999
Q ss_pred eeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCc
Q psy2381 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV 241 (350)
Q Consensus 162 ~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~ 241 (350)
+|++++.+..++||||+|+||.||||||+||||++|||||||||+||++|||+|++||++|||+.|.|.|+|++++.+|.
T Consensus 160 ~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g~ 239 (513)
T PRK14895 160 QGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADGA 239 (513)
T ss_pred ccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCC
Q psy2381 242 KISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321 (350)
Q Consensus 242 KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~ 321 (350)
|||||+|+++|.+|+++||+|+||+|||++|||+.++.|++|++||+++|+ +++++++|++||++||.|+|++||+.++
T Consensus 240 KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~F~-~~~v~~s~~~FD~~KL~wlN~~yi~~l~ 318 (513)
T PRK14895 240 KLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDWFN-LDSLGKSPSKLDFAKMNSLNAHYLRMLD 318 (513)
T ss_pred ccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhhCC-HHhCcCCcCcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988889999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2381 322 DKKLLNLIQPIIKK 335 (350)
Q Consensus 322 ~~~~~~~~~~~~~~ 335 (350)
.+++.+.+.||+.+
T Consensus 319 ~~el~~~~~~~l~~ 332 (513)
T PRK14895 319 NDSLTSKTVEILEQ 332 (513)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
No 5
>KOG1149|consensus
Probab=100.00 E-value=4.5e-106 Score=774.91 Aligned_cols=331 Identities=37% Similarity=0.674 Sum_probs=311.6
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCC--------e
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGP--------F 74 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~--------~ 74 (350)
.|||||||||||+||+|++||||+||||||++||+|||||||||++|.++++.++|.++|+|+||+||||| |
T Consensus 33 ~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY 112 (524)
T KOG1149|consen 33 CVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPY 112 (524)
T ss_pred eeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCch
Confidence 49999999999999999999999999999999999999999999999999999999999999999999975 9
Q ss_pred eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCC
Q psy2381 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLY 152 (350)
Q Consensus 75 ~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~ 152 (350)
.||+|.++|.++|++|++.|+||+||||++++..+|+.+...+..|+|++.|+++ +.+|++ .++|.|+++|||+++.
T Consensus 113 ~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~l-s~~ei~~~lakg~pf~iRFrl~~~ 191 (524)
T KOG1149|consen 113 EQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANL-SDAEIKQKLAKGTPFTIRFRLPKE 191 (524)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhccc-CHHHHHHHHhcCCCeeEEEecCCC
Confidence 9999999999999999999999999999999999999988888899999999999 888865 4789999999999974
Q ss_pred CceeEEeeeeeeeecCCCC-CCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEe
Q psy2381 153 GNITWNDLIKGKITISNKE-LDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~-~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H 231 (350)
...|+|+|+|++.++..+ .+||||+||||.||||||||||||+|||||||||+||++||++|++||+||||++|.|+|
T Consensus 192 -~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaH 270 (524)
T KOG1149|consen 192 -SPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAH 270 (524)
T ss_pred -CCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceee
Confidence 788999999999887654 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHHHhccccCCCCCCCCcccHHHHH
Q psy2381 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (350)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~-~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~ 310 (350)
+|++++++|.|||||+|+.+|..|+++||.|||++||++.+||+. ...+++|++||++.|+ +++++++++.+|.+||+
T Consensus 271 lpLl~n~d~sKLSKRqgD~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~-i~~ltk~~a~ld~ekL~ 349 (524)
T KOG1149|consen 271 LPLLLNPDGSKLSKRQGDASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFS-IERLTKSNAILDSEKLR 349 (524)
T ss_pred eeeeecCCcchhhhhcCcchHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhc-hhhhcccccccCHHHHH
Confidence 999999999999999999999999999999999999999999988 4578999999999999 99999999999999999
Q ss_pred HHHHHHhhcCC-----HHHHHHHHHHHHHhc
Q psy2381 311 WLNNFYIKSYD-----DKKLLNLIQPIIKKK 336 (350)
Q Consensus 311 ~~n~~~i~~~~-----~~~~~~~~~~~~~~~ 336 (350)
|+|+.||+... ..++...+.|.++..
T Consensus 350 ~~Nr~~lqr~~~n~s~l~~lv~~~q~~l~e~ 380 (524)
T KOG1149|consen 350 FLNRLHLQRLISNESKLRELVDKLQPLLKEA 380 (524)
T ss_pred HHHHHHHhhhccChHHHHHHHHHHHHHHHHh
Confidence 99999998554 334555566666543
No 6
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.7e-103 Score=789.38 Aligned_cols=333 Identities=52% Similarity=0.935 Sum_probs=320.6
Q ss_pred CCcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC-------C
Q psy2381 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG-------P 73 (350)
Q Consensus 1 m~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~-------~ 73 (350)
|++|||||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+ |
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred eeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCC
Q psy2381 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPL 151 (350)
Q Consensus 74 ~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~ 151 (350)
|+||+|+++|++++++|+++|+||+||||+++|++.|+.+.+.+.++.|+|+||++ +.+|+. ...|.++++|||+|.
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~-~~~~~~~~~~~g~~~~iR~k~p~ 160 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDL-TKEEVAARLAAGEPPVIRFKVPD 160 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCC-CHHHHHHHHhCCCCeeEEEEcCC
Confidence 99999999999999999999999999999999999998888888889999999999 877643 256889999999998
Q ss_pred CCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEe
Q psy2381 152 YGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H 231 (350)
.+.+.|+|.++|++.+++.+++|+||+|+||+||||||+|||||+|||||||||+||++|||+|.+++++|||+.|.|+|
T Consensus 161 ~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H 240 (476)
T PRK01406 161 EGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAH 240 (476)
T ss_pred CCceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHH
Q psy2381 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEW 311 (350)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~ 311 (350)
+|++++.+|.|||||+|.++|++|+++|+.|+|+.||+++|||+.+..+++++++++++|+ +++++++++.||++||.|
T Consensus 241 ~pli~~~~g~klSKR~g~~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~e~~~~~~~i~~f~-l~~~~~s~~~fd~~kL~~ 319 (476)
T PRK01406 241 LPLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGWSHGDQEIFSLEELIELFD-LERVSKSPARFDIKKLDW 319 (476)
T ss_pred eeeeeCCCCCcccCcCCccCHHHHHHCCCCHHHHHHHHHHhCCCCCccccCCHHHHHHhcC-hhhCCCCCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999988889999999999999 999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHH-HHHh
Q psy2381 312 LNNFYIKSYDDKKLLNLIQP-IIKK 335 (350)
Q Consensus 312 ~n~~~i~~~~~~~~~~~~~~-~~~~ 335 (350)
+|++||+.++.+++.+++.+ ++.+
T Consensus 320 ~N~~~i~~~~~~~l~~~~~~~~~~~ 344 (476)
T PRK01406 320 LNGHYIRELDPEELAELLLPWHLEQ 344 (476)
T ss_pred HHHHHHHhCCHHHHHHHHhHHHhhh
Confidence 99999999999999999998 6644
No 7
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=4.6e-100 Score=769.34 Aligned_cols=332 Identities=50% Similarity=0.890 Sum_probs=318.7
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+|||+||+||+|+++
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEEee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
|++++++|+++|+||+||||++++++.|+.+...+.++.|+|+||++ +.+|.. ...|.++++|||+|..+.+.|+|.
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l-~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNL-HEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQ 159 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccC-CHHHHHhHHhcCCCceEEEEcCCCCceeEEec
Confidence 99999999999999999999999999998877778889999999999 877643 246889999999998777999999
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g 240 (350)
++|++++++.+++|+||+|+||+||||||+||||++|||||||||+||+++||+|.+++++|||+.|.|.|+|++++.+|
T Consensus 160 ~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g 239 (470)
T TIGR00464 160 VRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG 239 (470)
T ss_pred ccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhc
Q psy2381 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS 319 (350)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~ 319 (350)
+|||||+|.++|++|+++|+.|+|+.+|++++||+.+ ..++++.+++++.|+ ++.++++++.||++||.|+|++||+.
T Consensus 240 ~kLSKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~-l~~~~~~~~~fd~~kL~~~N~~~l~~ 318 (470)
T TIGR00464 240 KKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFS-LNRVSKSPAKFDWKKLQWLNAHYIKE 318 (470)
T ss_pred ccccccCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcC-cccCCCCCCeecHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999875 578899999999999 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q psy2381 320 YDDKKLLNLIQPIIKKK 336 (350)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ 336 (350)
++++++.+++.|++.+.
T Consensus 319 l~~~~l~~~~~~~~~~~ 335 (470)
T TIGR00464 319 LPDEELFELLDPHLKSL 335 (470)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999654
No 8
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-98 Score=751.55 Aligned_cols=329 Identities=45% Similarity=0.776 Sum_probs=312.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y 83 (350)
|+|||||||||+||||||||||+||++||++||+|||||||||++|+.++|++.|+++|+||||+||++||+||+|++.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCC-CCCCCCCCCCCCCCCC--CCCCCCceEEEeCC--CCCceeEE
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP-RYNRIWRPEPGKILPS--IPINRKPVIRFKNP--LYGNITWN 158 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~-~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~--~~~~~~~~ 158 (350)
++++++|+++|+||+|+||+++|+++|+.+...+.+| .|+|.|+++ +.+|.. ...|.++++|||+| ..+. .|+
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L-~~~~~~~~~~~~~~~viR~k~~~~~~~~-~~~ 167 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNL-TLFEKMADLGEGGPAVVRLKIPMAHPGP-VFR 167 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhcc-chHHHHhhcccCCCeEEEEeCCCCCCCC-ccc
Confidence 9999999999999999999999999999888887767 999999999 776522 24488999999999 4444 899
Q ss_pred eeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecC
Q psy2381 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDS 238 (350)
Q Consensus 159 D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~ 238 (350)
|.|+|++.+.+...+| |+.|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|.|+|+|++.
T Consensus 168 D~v~g~i~~~~~~~~d-v~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~ 246 (472)
T COG0008 168 DLVRGRIVFAPKHPDF-VILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNE 246 (472)
T ss_pred cceeeeEecCccCCcc-eeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecC
Confidence 9999999998877799 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCC--CCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHH
Q psy2381 239 NKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH--GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFY 316 (350)
Q Consensus 239 ~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~--~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~ 316 (350)
+|+|||||++.+++.+++..|+.|++|.+|++++||+. ...+.+++++++++|+ +..++++++.||.+||.|+|.+|
T Consensus 247 ~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd-~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 247 DGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFD-LTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhh-hhhhhcccccccHHHhHhhhHHH
Confidence 99999999999999999999999999999999999987 4578899999999999 99999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHhc
Q psy2381 317 IKSYDDKKLLNLIQPIIKKK 336 (350)
Q Consensus 317 i~~~~~~~~~~~~~~~~~~~ 336 (350)
|+..+.+.+.+.+.+++.+.
T Consensus 326 ~~~~p~e~~~~~l~~~~~~~ 345 (472)
T COG0008 326 MRVDPVEVVIENLKPHLEEE 345 (472)
T ss_pred HHhCCHHHHHHhhhhhhhhh
Confidence 99999999999999887754
No 9
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1.8e-95 Score=693.91 Aligned_cols=292 Identities=31% Similarity=0.484 Sum_probs=271.5
Q ss_pred CCcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCH
Q psy2381 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (350)
Q Consensus 1 m~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~ 80 (350)
|++|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||++||+||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
++|++++++|+++|+||+||||+++|++.+ +.+.+.++.|+|+||++ +.+| ..++++|||+| ++.+.|+|.
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~--~~~~~~~~~y~g~cr~~-~~~~-----~~~~~iRlk~~-~~~~~~~D~ 153 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAA--PAPPDGGGIYPGTCRDL-LHGP-----RNPPAWRLRVP-DAVIAFDDR 153 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHh--hhccCCCCcCCCccccC-Cccc-----cCCceEEEEcC-CCceEEEEe
Confidence 999999999999999999999999998776 33345567999999999 8764 33789999998 478999999
Q ss_pred eeeeeecCCC-CCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCC
Q psy2381 161 IKGKITISNK-ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSN 239 (350)
Q Consensus 161 v~G~~~~~~~-~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~ 239 (350)
++|++.++.. +++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|+|+|++++.+
T Consensus 154 ~~G~~~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~ 233 (299)
T PRK05710 154 LQGRQHQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNAD 233 (299)
T ss_pred cceeEeeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCC
Confidence 9999987765 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCH--HHHHHhccccCCCCCCCCcccH
Q psy2381 240 KVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSI--KQFCYWFNDCKYLSKSPAQFNL 306 (350)
Q Consensus 240 g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~--~el~~~f~~~~~i~~~~~~~d~ 306 (350)
|+|||||+++.+|++ +|+.|+ +.+|++.|||+++ ..+++++ ++++++|+ ++++++++++|..
T Consensus 234 g~kLSKr~~~~~i~~---~g~~p~-l~~~l~~lG~~~~~~~~~~~~~~~~~i~~f~-~~~~~~~~~~~~~ 298 (299)
T PRK05710 234 GQKLSKQNGAPALDA---AGPLPV-LAAALRFLGQPPPAADASVEELLAQAVAHWD-LTRLPRQAEINPA 298 (299)
T ss_pred CCcccccCCccchhh---cCcCHH-HHHHHHHcCCCCCccccccccCHHHHHHhCC-HhhCCcCCccCCC
Confidence 999999999999987 899999 9999999999874 3455555 79999999 9999999998753
No 10
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=2.2e-97 Score=716.34 Aligned_cols=307 Identities=45% Similarity=0.775 Sum_probs=275.7
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||.||++||+||+|+++
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcC--CCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEE
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFG--EKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWN 158 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~--~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~~~~~~~ 158 (350)
|++++++|+++|+||+||||+++|++.++.+...+ ..+.|+|+||++ +.+|+. ..++.++++|||+|....+.|.
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~-~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCREL-TEEEMRAGLAKGGPAVIRLKVPMESPIAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCH-HHHHHHHHHHTTTSEEEEE-SSSTCCEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhh-hHHHHHhhhccCCceeeeeecccccccccc
Confidence 99999999999999999999999999988755444 678999999998 755533 2568899999999987669999
Q ss_pred eeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecC
Q psy2381 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDS 238 (350)
Q Consensus 159 D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~ 238 (350)
|.+.|++.+...+++||||+|+||+|||||||||||++|||||||||+||++||++|++||++|||++|.|+|+|++++.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999999887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCC--HHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHHHhccccCCCCCCCCcccHHHHHH
Q psy2381 239 NKVKISKRKEATD--IMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEW 311 (350)
Q Consensus 239 ~g~KLSKR~g~~~--l~~l~~~G~~peal~~~l~~lG~~~-~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~ 311 (350)
+|+|||||+++.+ +..+++.|++|+++.+||+++||++ ...++++.++++++|+ ++.++++++.||.+||.|
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~-~~~~~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFD-LSKISKSPAVFDRKKLDW 314 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC--GGGBHSSHEEHHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhh-HhhccCchHHhCHHHhCC
Confidence 9999999999988 8999999999999999999999995 5688999999999999 999999999999999998
No 11
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=1.8e-91 Score=659.54 Aligned_cols=270 Identities=32% Similarity=0.468 Sum_probs=251.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y 83 (350)
++|||||||||+|||||+||||+||++||++||+|||||||||++|+++++++.|+++|+||||+|||+|++||+|+++|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeee
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G 163 (350)
++++++|+++|+||+||||++++++.+ .+.++.|+|+||+. .. ...+.++++|||+|. +.+.|.|.++|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~-----~~~~~~y~~~cr~~-~~----~~~~~~~~~Rlk~~~-~~~~~~D~~~g 149 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAA-----GDGGGIYPGTCRNG-LL----GRPARPAAWRLRVPD-GVIAFDDRLQG 149 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHh-----cCCCCCCCchhhcc-cc----cccCCCceEEEecCC-CCceEEEeeee
Confidence 999999999999999999999998765 23456899999984 32 125778999999995 68899999999
Q ss_pred eeecC-CCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCce
Q psy2381 164 KITIS-NKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242 (350)
Q Consensus 164 ~~~~~-~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~K 242 (350)
++.+. +..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||+.|.|+|+|+|++.+|+|
T Consensus 150 ~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~k 229 (272)
T TIGR03838 150 PQQQDLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEK 229 (272)
T ss_pred EEEecCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCCCe
Confidence 99887 77889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHH
Q psy2381 243 ISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFC 288 (350)
Q Consensus 243 LSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~-~~~~~~~~~el~ 288 (350)
||||+++.+|+++ -.++++.++++++||++ ++.|++|++||+
T Consensus 230 LSKR~~~~~i~~~----~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~ 272 (272)
T TIGR03838 230 LSKQNGAPALDLS----HPLPALLAALRFLGLPPPPELAAASPAELL 272 (272)
T ss_pred eeccCCccchhcC----CcHHHHHHHHHHcCCCCCcccccCCHHHhC
Confidence 9999999999865 36889999999999987 467899999874
No 12
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=2.2e-80 Score=570.49 Aligned_cols=228 Identities=46% Similarity=0.810 Sum_probs=222.8
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|++||+||||+||++||+||+|+++
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~ 162 (350)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999887
Q ss_pred eeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCce
Q psy2381 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242 (350)
Q Consensus 163 G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~K 242 (350)
|+|||||||||||++|||||||||+||++|||+|++|+++||++.|.|+|+|++++.+|+|
T Consensus 93 -------------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~K 153 (230)
T cd00418 93 -------------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTK 153 (230)
T ss_pred -------------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhh
Q psy2381 243 ISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIK 318 (350)
Q Consensus 243 LSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~ 318 (350)
||||+++.+|++++++|++|+||++|++.|||+++ +.+++++++++++|+ ++++++++++||++||.|+|++||+
T Consensus 154 LSKr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~-~~~~~~~~~~~d~~kL~~~N~~~l~ 229 (230)
T cd00418 154 LSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFS-VERVNSADATFDWAKLEWLNREYIR 229 (230)
T ss_pred ccCcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcC-HhhCCCCCcccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999874 468899999999999 9999999999999999999999996
No 13
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-80 Score=627.66 Aligned_cols=275 Identities=25% Similarity=0.392 Sum_probs=241.8
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+||||||||||||||||||||+||++||++||+|+|||||||++|+.++|++.|++||+||||+||+++++||+|++.
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSdr~d~ 131 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSDYMDL 131 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccccHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC---------CCCCCceEEEeCCCCC
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI---------PINRKPVIRFKNPLYG 153 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~---------~~~~~~~~R~k~~~~~ 153 (350)
|+++|++|+++|+||+|+||+++|++.|. ..|+++||++ +++|... ..+...++|+|++
T Consensus 132 y~e~a~~Li~~G~AY~c~cs~eei~~~r~--------~g~p~~~R~~-s~ee~l~~~~~m~~g~~~~~~~~lR~kid--- 199 (601)
T PTZ00402 132 MYEKAEELIKKGLAYCDKTPREEMQKCRF--------DGVPTKYRDI-SVEETKRLWNEMKKGSAEGQETCLRAKIS--- 199 (601)
T ss_pred HHHHHHHHHHcCCEEEecCCHHHHHHHHh--------CCCCCCCCCC-CHHHHHHHHHhccccccCCCceEEEEecc---
Confidence 99999999999999999999999976542 2589999999 8876210 1123345554442
Q ss_pred ceeEEeeeeeeeecCCCCCCCeEEEecC------------CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHH
Q psy2381 154 NITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKA 221 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~d------------G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~a 221 (350)
+...+.+++||||+|.+ |+|||||||||||++|||||||||.||++|||+|.+|+++
T Consensus 200 -----------~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~a 268 (601)
T PTZ00402 200 -----------VDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDA 268 (601)
T ss_pred -----------cCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHH
Confidence 22345678999999964 9999999999999999999999999999999999999999
Q ss_pred hCCCCCceEeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHH
Q psy2381 222 LGVTLPFYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIK 285 (350)
Q Consensus 222 Lg~~~P~y~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~ 285 (350)
|||++|.|+|+|+ +|.+|+|||||++. +||..|+++|++|++|++|+..+|
T Consensus 269 Lg~~~P~~~h~~r-Ln~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~G------------ 335 (601)
T PTZ00402 269 LGIRKPIVEDFSR-LNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQG------------ 335 (601)
T ss_pred hCCCCceEEEEee-EcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhC------------
Confidence 9999999999996 69999999999964 356777777777777777777666
Q ss_pred HHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 286 QFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 286 el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
++++++.||++||+|+|+++|++.+++.
T Consensus 336 -----------vsk~~~~~d~~~L~~~nr~~l~~~a~R~ 363 (601)
T PTZ00402 336 -----------MSKTVNFMEWSKLWYFNTQILDPSVPRY 363 (601)
T ss_pred -----------CCCCCcccCHHHHHHHHHHHHhhcCCce
Confidence 4677899999999999999999988764
No 14
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=7e-80 Score=621.09 Aligned_cols=275 Identities=24% Similarity=0.292 Sum_probs=248.1
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||+||+ +++||+|++
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~-~~~qSdr~~ 88 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS-VSFTSDYFE 88 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC-CccccccHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCCC
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPLY 152 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~~ 152 (350)
.|+++|++|+++|+||+|+||+++|++.|+. .++++||++ +++|.. ...+.++++|+|.+
T Consensus 89 ~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~--------~~~~~~R~~-s~ee~l~~~~~m~~G~~~~~~~~lR~K~d-- 157 (523)
T PLN03233 89 PIRCYAIILIEEGLAYMDDTPQEEMKKERAD--------RAESKHRNQ-SPEEALEMFKEMCSGKEEGGAWCLRAKID-- 157 (523)
T ss_pred HHHHHHHHHHHcCCeEecCCCHHHHHHHHhh--------hccCccccC-CHHHHHHHHHHHhcccccCCCeEEEEeCc--
Confidence 9999999999999999999999999877643 467899999 887622 12355677777764
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEecCC------------CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHH
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVRADG------------IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG------------~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~ 220 (350)
+.+.+.+++||||+|+|| +|||||||||||++|||||||||.||++|||+|.+||+
T Consensus 158 ------------~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~ 225 (523)
T PLN03233 158 ------------MQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQK 225 (523)
T ss_pred ------------ccCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHH
Confidence 345677899999999995 79999999999999999999999999999999999999
Q ss_pred HhCCCCCceEeeceeecCCCceeccCC-------CCC---------CHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCH
Q psy2381 221 ALGVTLPFYGHLPMVIDSNKVKISKRK-------EAT---------DIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSI 284 (350)
Q Consensus 221 aLg~~~P~y~H~pll~~~~g~KLSKR~-------g~~---------~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~ 284 (350)
+|||+.|.| |.+..++..|+|||||+ |.+ ||++||++|++||||++|++.+|++.
T Consensus 226 aLg~~~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~-------- 296 (523)
T PLN03233 226 ALGLRRPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASR-------- 296 (523)
T ss_pred HhCCCCCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCC--------
Confidence 999999999 44777899999999997 444 79999999999999999999999854
Q ss_pred HHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 285 KQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 285 ~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
+.+.+++++|++.|++.|++.+++.
T Consensus 297 ---------------~~~~i~~~~l~~~nR~~ld~~a~R~ 321 (523)
T PLN03233 297 ---------------RVVNLDWAKFWAENKKEIDKRAKRF 321 (523)
T ss_pred ---------------CCceecHHHHHHHHHHHhcccCCce
Confidence 3467899999999999999888765
No 15
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=4.1e-80 Score=623.41 Aligned_cols=300 Identities=23% Similarity=0.348 Sum_probs=267.9
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y 83 (350)
|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+||||.||+++++||+|++.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-----C----CCCCCceEEEeCCCC-C
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----I----PINRKPVIRFKNPLY-G 153 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~-----~----~~~~~~~~R~k~~~~-~ 153 (350)
+++|++|+++|+||+|+||+++|++.|+.+ ..++|+++||++ ++||.. . .++.++++|||++.. .
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~----~~~g~~~~~R~~-s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~ 155 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTL----TDPGKNSPYRDR-SIEENLALFEKMRDGKFKEGKAILRAKIDMASP 155 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhc----ccCCCCCcccCC-CHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCC
Confidence 999999999999999999999999888542 246799999999 888732 1 122368999999853 4
Q ss_pred ceeEEeeeeeeeecCCCCC--CCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CC---
Q psy2381 154 NITWNDLIKGKITISNKEL--DDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LP--- 227 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~--~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~-~P--- 227 (350)
...+.|.|.|.+.+..... +++++ +||||||||||||+|||||||||.||++||+.|.|++..+++. .|
T Consensus 156 n~~~rD~V~~Ri~~~~h~~~gdk~~i-----yPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~ 230 (522)
T TIGR00440 156 FPVMRDPVAYRIKFAPHHQTGTKWCI-----YPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQY 230 (522)
T ss_pred CceEeeeeEEEEecCCCCCCCCCeeE-----EeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceE
Confidence 6788999999887665432 45554 9999999999999999999999999999999999999999997 78
Q ss_pred ceEeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCC--ccccCHHHHHH
Q psy2381 228 FYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGN--EEIFSIKQFCY 289 (350)
Q Consensus 228 ~y~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~--~~~~~~~el~~ 289 (350)
.|+|+ |.+|+|||||++. +||++||++||+||||+|||+.+|||+++ .++.+++++++
T Consensus 231 ~F~rl----n~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r 306 (522)
T TIGR00440 231 EFSRL----NLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIR 306 (522)
T ss_pred EEEEE----CCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHH
Confidence 67774 5689999999976 38999999999999999999999999754 37889999999
Q ss_pred hccccCCCCCCCCcccHHHH--HHHHHHH-hh
Q psy2381 290 WFNDCKYLSKSPAQFNLKKL--EWLNNFY-IK 318 (350)
Q Consensus 290 ~f~~~~~i~~~~~~~d~~kL--~~~n~~~-i~ 318 (350)
.|. .+.+++++++||+.|| .++|..+ +.
T Consensus 307 ~f~-~~~~~r~~av~d~~kl~i~~~~~~~~~~ 337 (522)
T TIGR00440 307 EDL-NENAPRAMAVIDPVEVVIENLSDEYELA 337 (522)
T ss_pred Hhh-hhcCcccccccccceEEEecCCCCceEE
Confidence 999 9999999999999999 7887666 54
No 16
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-78 Score=611.61 Aligned_cols=277 Identities=25% Similarity=0.390 Sum_probs=245.8
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|++||+||||.||+++++||+|++
T Consensus 28 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~~d~~~~~qS~r~~ 107 (554)
T PRK05347 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSGELRYASDYFD 107 (554)
T ss_pred CceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCCCCCCceeeecCHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC-----CCC----CCceEEEeCCCC
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSI-----PIN----RKPVIRFKNPLY 152 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~-----~~~----~~~~~R~k~~~~ 152 (350)
.|+++|++|+++|+||+|+||+++|++.|+.+.. ++++++||++ ++||... .+| .++++|+|++
T Consensus 108 ~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~----~g~~~~~R~~-s~eenl~~~~~m~~G~~~~g~~vlR~Kid-- 180 (554)
T PRK05347 108 QLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTE----PGKNSPYRDR-SVEENLDLFERMRAGEFPEGSAVLRAKID-- 180 (554)
T ss_pred HHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhh----cCCCCCccCC-CHHHHHHHHHHHHCCCCCCCcEEEEEEee--
Confidence 9999999999999999999999999998876543 3568999999 8887320 122 3445555542
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEec-------CC-----CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHH
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVRA-------DG-----IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------dG-----~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~ 220 (350)
+..++..++|+||+|+ +| +|||||||+||||+|||||||||.||++|||+|.+||+
T Consensus 181 ------------~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~ 248 (554)
T PRK05347 181 ------------MASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLD 248 (554)
T ss_pred ------------ccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHH
Confidence 3455678899999999 48 99999999999999999999999999999999999999
Q ss_pred HhCC-CCC---ceEeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCcc
Q psy2381 221 ALGV-TLP---FYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEE 280 (350)
Q Consensus 221 aLg~-~~P---~y~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~ 280 (350)
+||+ ..| .|+|+ +.+|+|||||++. .||++||++||+||||+||++.+|||.
T Consensus 249 alg~~~~P~~~~F~rl----n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~---- 320 (554)
T PRK05347 249 NLPIPPHPRQYEFSRL----NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTK---- 320 (554)
T ss_pred HcCCCCCCceEEEEEE----CCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCC----
Confidence 9986 478 68886 5589999999953 389999999999999999999999864
Q ss_pred ccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 281 IFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 281 ~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
+...+++++|+++|+++|++.+++.
T Consensus 321 -------------------~~~~i~~~~L~~~nRk~ld~~a~R~ 345 (554)
T PRK05347 321 -------------------QDSVIDMSMLESCIREDLNENAPRA 345 (554)
T ss_pred -------------------CCCeecHHHHHHHHHHHhccCCCce
Confidence 3467899999999999999988764
No 17
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=1.7e-77 Score=622.18 Aligned_cols=294 Identities=23% Similarity=0.352 Sum_probs=266.5
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++
T Consensus 263 g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~-~~~qSd~f~ 341 (788)
T PLN02859 263 GKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK-ITYTSDYFQ 341 (788)
T ss_pred CceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC-cccccHhHH
Confidence 3599999999999999999999999999999999999999999999999999999999999999999997 899999998
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCC-
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPL- 151 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~- 151 (350)
.++++|.+|+++|+||+|+||+++|++.|+.+ .+++||++ +++|.. ...+.++++|+|++.
T Consensus 342 ~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~--------~~sp~Rd~-s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~ 412 (788)
T PLN02859 342 ELYELAVELIRRGHAYVDHQTPEEIKEYREKK--------MNSPWRDR-PIEESLKLFEDMRRGLIEEGKATLRMKQDMQ 412 (788)
T ss_pred HHHHHHHHHHHcCCeEeccCCHHHHHHHHhhh--------ccCCCCCC-ChHHhhhhhHHHHhchhccCCeEEEEeccCC
Confidence 77778999999999999999999999888642 35789998 877621 122336999999985
Q ss_pred CCceeEEeeeeeeeecCCC--CCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCce
Q psy2381 152 YGNITWNDLIKGKITISNK--ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFY 229 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~~~--~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y 229 (350)
++...|.|.|.|++.+... ..+||+| +||||||||||||+|||||||||.||++|||+|.|||++|||..|.+
T Consensus 413 ~~n~~~rD~V~~RI~~~~h~rtgdk~~i-----yPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~~P~~ 487 (788)
T PLN02859 413 NDNFNMYDLIAYRIKFTPHPHAGDKWCI-----YPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYV 487 (788)
T ss_pred CCCceeeeceeEEEeccCCCccCCCeEE-----EecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCCCCcE
Confidence 5778999999999987654 4578888 99999999999999999999999999999999999999999999999
Q ss_pred EeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccc
Q psy2381 230 GHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFND 293 (350)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~ 293 (350)
.|+| .+|.+|+|||||++. +||.+||++||+|+||+||++.+||+..+.|++++++| +.|+
T Consensus 488 ~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~L-e~~~- 564 (788)
T PLN02859 488 WEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRL-EHHI- 564 (788)
T ss_pred Eeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHH-HhhC-
Confidence 9999 569999999999964 48999999999999999999999999987788999998 9999
Q ss_pred cCCCCCCC----CcccHHHHHHHH
Q psy2381 294 CKYLSKSP----AQFNLKKLEWLN 313 (350)
Q Consensus 294 ~~~i~~~~----~~~d~~kL~~~n 313 (350)
++.|++++ +++|+.|+...|
T Consensus 565 r~~l~~~a~R~maV~dp~kv~i~n 588 (788)
T PLN02859 565 REELNKTAPRTMVVLHPLKVVITN 588 (788)
T ss_pred HHhhCCcCcchheecCCeEEEEec
Confidence 99998887 589999987766
No 18
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=9.1e-77 Score=604.06 Aligned_cols=276 Identities=30% Similarity=0.477 Sum_probs=251.4
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|++.|++||+|||+.||+ +++||+|++
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~-~~~qSd~~~ 170 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDE-VVYQSDRIE 170 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCc-cccccccHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCCC
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPLY 152 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~~ 152 (350)
.|++++++|+++|+||+|+||+++|++.|. ..|+|+||++ +++|.. ...+.++++|+|++
T Consensus 171 ~y~~~a~~Li~~G~AY~C~cs~eei~~~r~--------~g~~~~cR~~-s~eenl~~fe~m~~g~~~~~~~~lR~K~d-- 239 (560)
T TIGR00463 171 EYYDYCRKLIEMGKAYVCDCPPEEFRELRN--------DGVACACRDR-SVEENLEIWEEMLNGTEEGGKVVVRAKTD-- 239 (560)
T ss_pred HHHHHHHHHHHcCCceeecCCHHHHHHHHh--------CCCCCCccCC-CHHHHHHHHHHHhcccccCCCeEEEEECC--
Confidence 999999999999999999999999987763 2489999999 877621 13467889999985
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEecCC------------CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHH
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVRADG------------IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG------------~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~ 220 (350)
+.+.+.+++|||++|.++ +|||||||||||++|||||||||.||++||++|+++|.
T Consensus 240 ------------~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~ 307 (560)
T TIGR00463 240 ------------YKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYM 307 (560)
T ss_pred ------------CcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHH
Confidence 234567889999999964 89999999999999999999999999999999999999
Q ss_pred HhCCCCCceEeeceeecCCCceeccCCC----------------CCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCH
Q psy2381 221 ALGVTLPFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSI 284 (350)
Q Consensus 221 aLg~~~P~y~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~ 284 (350)
+|||+.|.|.|+|++.+..|.|||||+. ..|+++||++|++|+||++|++.+||+.
T Consensus 308 ~lg~~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~-------- 379 (560)
T TIGR00463 308 YFGWELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKR-------- 379 (560)
T ss_pred HcCCCCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCC--------
Confidence 9999999999999999999999998762 2589999999999999999999999864
Q ss_pred HHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 285 KQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 285 ~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
+.+.+++++|+..|++.|++.+++.
T Consensus 380 ---------------~~~~i~~~~l~~~nr~~id~~a~R~ 404 (560)
T TIGR00463 380 ---------------NDVNLSWKNIYAFNKKIIDPIARRY 404 (560)
T ss_pred ---------------CCceeeHHHHHHHHHHHhCcCCCce
Confidence 3467899999999999999888764
No 19
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-76 Score=602.87 Aligned_cols=274 Identities=32% Similarity=0.495 Sum_probs=247.1
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCc--ccccHHHHHHHHHHHHHcCCCCCCCCeeecCCH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDI--NRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~--~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~ 80 (350)
+|+|||||||||+|||||||||++||++||++||+|+|||||||+ +|+.++|++.|++||+||||.||+ +++||+|+
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~-~~~qSdr~ 179 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE-VVIQSDRL 179 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC-ccCcccCH
Confidence 599999999999999999999999999999999999999999999 999999999999999999999997 89999999
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCC
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPL 151 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~ 151 (350)
+.|+++|++|+++|+||+|+||++++++.|. ..|+|+||++ +++|.. ...+.++++|+|++.
T Consensus 180 ~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~--------~g~~~~~R~~-~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~ 250 (567)
T PRK04156 180 EIYYEYARKLIEMGGAYVCTCDPEEFKELRD--------AGKPCPHRDK-SPEENLELWEKMLDGEYKEGEAVVRVKTDL 250 (567)
T ss_pred HHHHHHHHHHHHcCCCccCCCCHHHHHHHHh--------cCCCCCCcCC-CHHHHHHHHHHhhcCccccCCeEEEEECcc
Confidence 9999999999999999999999999977653 2478999999 877621 012346899999852
Q ss_pred CCceeEEeeeeeeeecCCCCCCCeEEEecC---------C---CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHH
Q psy2381 152 YGNITWNDLIKGKITISNKELDDLVIVRAD---------G---IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINIL 219 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~d---------G---~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~ 219 (350)
...+.+++|||++|.+ + +|||||||+||||+|||||||||.||++||++|.+||
T Consensus 251 --------------~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~ 316 (567)
T PRK04156 251 --------------EHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIY 316 (567)
T ss_pred --------------cCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHH
Confidence 2456688999999973 3 8999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccC
Q psy2381 220 KALGVTLPFYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFS 283 (350)
Q Consensus 220 ~aLg~~~P~y~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~ 283 (350)
++|||+.|.|.|+|+| +.+|+|||||++. .|+++|+++|++|+||++|++.+||+
T Consensus 317 ~~Lg~~~P~~~H~~~L-~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s-------- 387 (567)
T PRK04156 317 DYFGWEYPETIHYGRL-KIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVK-------- 387 (567)
T ss_pred HHcCCCCceEEEccee-cCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCC--------
Confidence 9999999999999998 5799999999932 58999999999999999999999985
Q ss_pred HHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 284 IKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 284 ~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
++++.|++++|+++|+++|++.+++.
T Consensus 388 ---------------~~~~~~~~~~L~~~nr~~ld~~a~R~ 413 (567)
T PRK04156 388 ---------------ETDATISWENLYAINRKLIDPIANRY 413 (567)
T ss_pred ---------------CCCcccCHHHHHHHHHHHHhccCCce
Confidence 34678999999999999999888765
No 20
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=5.1e-76 Score=617.22 Aligned_cols=274 Identities=24% Similarity=0.330 Sum_probs=247.5
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|++.|++||+||||+||+ +++||+|++.
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~-~~~qS~r~~~ 291 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDA-VTYTSDYFPQ 291 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCC-cccccccHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCCCC
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPLYG 153 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~~~ 153 (350)
|+++|++|+++|+||+|+|+++++++.|. ..|+|+||++ ++||.. ...|.++++|+|++
T Consensus 292 y~~~a~~Li~~G~aY~~~~~~~~~~~~~~--------~~~~~~~R~~-~~ee~~~~~~~m~~g~~~~~~~~lR~k~d--- 359 (722)
T PLN02907 292 LMEMAEKLIKEGKAYVDDTPREQMRKERM--------DGIESKCRNN-SVEENLRLWKEMIAGSERGLQCCVRGKLD--- 359 (722)
T ss_pred HHHHHHHHHHcCCeeecCCCHHHHHHHHh--------cCCCCCccCC-CHHHHHHHHHHHhcccccCCCeEEEEEcc---
Confidence 99999999999999999999999977653 1699999999 888731 13567889999986
Q ss_pred ceeEEeeeeeeeecCCCCCCCeEEEecCC------------CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHH
Q psy2381 154 NITWNDLIKGKITISNKELDDLVIVRADG------------IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKA 221 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG------------~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~a 221 (350)
+.+++.+++|+|+.|.+| +|||||||||||++|||||||||.||++|||+|.+||++
T Consensus 360 -----------~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~ 428 (722)
T PLN02907 360 -----------MQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILED 428 (722)
T ss_pred -----------cCCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHH
Confidence 345567889999999987 999999999999999999999999999999999999999
Q ss_pred hCCCCCceEeeceeecCCCceeccCC-------CC---------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHH
Q psy2381 222 LGVTLPFYGHLPMVIDSNKVKISKRK-------EA---------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIK 285 (350)
Q Consensus 222 Lg~~~P~y~H~pll~~~~g~KLSKR~-------g~---------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~ 285 (350)
|||+.|.+.|.+. +|.+|+|||||+ |. .|++++|++|++||+|++|+..+|++
T Consensus 429 lg~~~p~~~~f~~-l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s---------- 497 (722)
T PLN02907 429 MGLRKVHIWEFSR-LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGAS---------- 497 (722)
T ss_pred cCCCCCeeEEEEE-EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCC----------
Confidence 9999985444444 377899999999 43 37999999999999999999999974
Q ss_pred HHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 286 QFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 286 el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
++++.||++||+|+|+++|++.+++.
T Consensus 498 -------------~~~~~~~~~~l~~~nr~~id~~a~R~ 523 (722)
T PLN02907 498 -------------KNLNLMEWDKLWTINKKIIDPVCPRH 523 (722)
T ss_pred -------------cCCccccHHHHHHHHHHHhccCCCce
Confidence 45689999999999999999998774
No 21
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=9.5e-75 Score=536.66 Aligned_cols=229 Identities=51% Similarity=0.917 Sum_probs=222.2
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC--------CCe
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE--------GPF 74 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de--------~~~ 74 (350)
+|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.+++++.|+++|+||||+||+ +||
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999999 589
Q ss_pred eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q psy2381 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGN 154 (350)
Q Consensus 75 ~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~ 154 (350)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999998766
Q ss_pred eeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeece
Q psy2381 155 ITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (350)
Q Consensus 155 ~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pl 234 (350)
||+|||+||+||||++|||||||||+||+++|++|++++++||++.|.|.|+|+
T Consensus 101 --------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pl 154 (239)
T cd00808 101 --------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPL 154 (239)
T ss_pred --------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecc
Confidence 799999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhccccCCCCCCCCcccHHHHHHHH
Q psy2381 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLN 313 (350)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~-~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n 313 (350)
+++.+|+|||||+++.+|++|+++|++|++|++|++.+||++.+ .++++++||+++|+ ++.++++++.||++||+|+|
T Consensus 155 l~~~~g~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~-~~~~~~~~~~~d~~kL~~~n 233 (239)
T cd00808 155 ILNPDGKKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFD-LERVSKSPAIFDPEKLDWLN 233 (239)
T ss_pred ccCCCCCcccCCCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCC-HhhCCcCcCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998754 67899999999999 99999999999999999999
Q ss_pred HHHhh
Q psy2381 314 NFYIK 318 (350)
Q Consensus 314 ~~~i~ 318 (350)
++||+
T Consensus 234 ~~~l~ 238 (239)
T cd00808 234 GQYIR 238 (239)
T ss_pred HHHhh
Confidence 99996
No 22
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=1.1e-74 Score=606.29 Aligned_cols=276 Identities=26% Similarity=0.392 Sum_probs=245.1
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+|||||||||+|||||||+|++||++||++||+|+|||||||++|+.++|++.|++||+||||+||+++|+||+|+++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~~~~~qS~~~~~ 110 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHLYYASDYFER 110 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCCCceEeecCHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-----CCCC----CCceEEEeCCCCC
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----IPIN----RKPVIRFKNPLYG 153 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~-----~~~~----~~~~~R~k~~~~~ 153 (350)
|+++|++|+++|+||+|+||++++++.|..+. .+.|+++||++ +++|.. ...| .++++|+|+
T Consensus 111 y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~----~~g~~~~~R~~-s~ee~l~~~~~m~~G~~~~g~~vlR~Ki---- 181 (771)
T PRK14703 111 MYAYAEQLIKMGLAYVDSVSEEEIRELRGTVT----EPGTPSPYRDR-SVEENLDLFRRMRAGEFPDGAHVLRAKI---- 181 (771)
T ss_pred HHHHHHHHHHcCCcccCcCCHHHHHHHHhhhh----hcCCCCCCCCC-CHHHHHHHHHHHhCCCCcCCCeEEEEEe----
Confidence 99999999999999999999999998887543 35688999999 887732 1122 367888876
Q ss_pred ceeEEeeeeeeeecCCCCCCCeEEEecC------------CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHH
Q psy2381 154 NITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKA 221 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~d------------G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~a 221 (350)
++.+++..++|||++|.+ ++|||||||+||||+|||||||||.||++||++|.+||++
T Consensus 182 ----------d~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~ 251 (771)
T PRK14703 182 ----------DMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDH 251 (771)
T ss_pred ----------eccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHH
Confidence 355667889999999974 4899999999999999999999999999999999999999
Q ss_pred hCCCC--C---ceEeeceeecCCCceeccCC-------CC---------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCcc
Q psy2381 222 LGVTL--P---FYGHLPMVIDSNKVKISKRK-------EA---------TDIMYYKKKGFLPEAILNYLARLGWSHGNEE 280 (350)
Q Consensus 222 Lg~~~--P---~y~H~pll~~~~g~KLSKR~-------g~---------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~ 280 (350)
||+.. | .|+|+|+ .|+|||||+ |. .||.+||++||+||||++|++.+||+..
T Consensus 252 l~~~~~~P~~~~f~rl~l----~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~--- 324 (771)
T PRK14703 252 LGPWPPRPRQYEFARLAL----GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKT--- 324 (771)
T ss_pred hCCCCCCcceeEEEEecc----CCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCcc---
Confidence 96533 5 6899988 588999999 43 3799999999999999999999998642
Q ss_pred ccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH
Q psy2381 281 IFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK 324 (350)
Q Consensus 281 ~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~ 324 (350)
.+.+++++|+..|++.|++.+++.
T Consensus 325 --------------------~~~i~~~~L~~~~R~~ld~~a~R~ 348 (771)
T PRK14703 325 --------------------NSTVDIGVLEFAIRDDLNRRAPRV 348 (771)
T ss_pred --------------------CceecHHHHHHHHHHHhccCCCce
Confidence 367888999999999998887653
No 23
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2.5e-72 Score=517.62 Aligned_cols=221 Identities=28% Similarity=0.424 Sum_probs=199.4
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~-~~~QS~r~~~ 79 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK-VTYASDYFDQ 79 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC-ceecccCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~ 162 (350)
|++++++|+++|+||+ +|+. +
T Consensus 80 Y~~~~~~L~~~g~aY~--------------------------~~~~-----------~---------------------- 100 (238)
T cd00807 80 LYEYAEQLIKKGKAYV--------------------------HHRT-----------G---------------------- 100 (238)
T ss_pred HHHHHHHHHHcCCeec--------------------------CCCC-----------C----------------------
Confidence 9999999999999997 1110 0
Q ss_pred eeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCce
Q psy2381 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVK 242 (350)
Q Consensus 163 G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~K 242 (350)
+++++ +|||||||||||++|||||||||+||++|||+|++|+++|||++|.+.|...+ |.+|+|
T Consensus 101 ----------~~~~i-----~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hl-n~~g~k 164 (238)
T cd00807 101 ----------DKWCI-----YPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRL-NLTYTV 164 (238)
T ss_pred ----------CCEEE-----EeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEE-CCCCCC
Confidence 12333 49999999999999999999999999999999999999999999963333333 889999
Q ss_pred eccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccH
Q psy2381 243 ISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNL 306 (350)
Q Consensus 243 LSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~ 306 (350)
||||+++ .++..|+++|+.||||+||++.|||+ ++++.||+
T Consensus 165 LSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s-----------------------~~~~~~~~ 221 (238)
T cd00807 165 MSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVS-----------------------KADSTIDW 221 (238)
T ss_pred ccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCC-----------------------CCCcccCH
Confidence 9999964 25899999999999999999999974 56799999
Q ss_pred HHHHHHHHHHhhcCCH
Q psy2381 307 KKLEWLNNFYIKSYDD 322 (350)
Q Consensus 307 ~kL~~~n~~~i~~~~~ 322 (350)
+||+++|+++|++.++
T Consensus 222 ~~l~~~nr~~id~~~~ 237 (238)
T cd00807 222 DKLEACVRKDLNPTAP 237 (238)
T ss_pred HHHHHHHHHHhccCCC
Confidence 9999999999998875
No 24
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-72 Score=565.25 Aligned_cols=285 Identities=20% Similarity=0.275 Sum_probs=247.0
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|+|||||||||+|||||||+||+||++||++||+|+|||||||++|+.++|++.|+++|+||||+||+ +++||+|++.
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~-~~~qS~y~~~ 129 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDW-VTFSSDYFDQ 129 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC-CCcCchhHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999998 6799999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC--------C-CCCCCCceEEEeCCCC-
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILP--------S-IPINRKPVIRFKNPLY- 152 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~--------~-~~~~~~~~~R~k~~~~- 152 (350)
|+++|++|+++|+||+|+||+++|++.|..+ .+++||++ ++||. . ..++..+++|+|++..
T Consensus 130 ~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~--------~~~~~R~~-~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~ 200 (574)
T PTZ00437 130 LHEFAVQLIKDGKAYVDHSTPDELKQQREQR--------EDSPWRNR-SVEENLLLFEHMRQGRYAEGEATLRVKADMKS 200 (574)
T ss_pred HHHHHHHHHHcCCEEEcCCCHHHHHHHhhcc--------cCCccccC-CHHHHHHHHHHHhhcccccCCeEEEEeCcCCC
Confidence 9999999999999999999999999887642 36899999 88872 1 1223456999998742
Q ss_pred CceeEEeeeeeeeecCCC-CCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEe
Q psy2381 153 GNITWNDLIKGKITISNK-ELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~-~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H 231 (350)
....+.|.|.+.+.+... -.+|.+ +++|||||||+||||+||||||||+.||.++.+.|.||+++|+|..|...|
T Consensus 201 ~n~~~rD~v~~Ri~~~~h~~~gdk~----~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~p~~~e 276 (574)
T PTZ00437 201 DNPNMRDFIAYRVKYVEHPHAKDKW----CIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWE 276 (574)
T ss_pred CCCccccCeeeeeccCCcCCCCCce----EEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcccceEe
Confidence 234455555555544322 123433 489999999999999999999999999999999999999999999999999
Q ss_pred eceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccC
Q psy2381 232 LPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCK 295 (350)
Q Consensus 232 ~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~ 295 (350)
.|.+ |.+|.|||||+.. .|+.+||++||+||||++|++.+|||.
T Consensus 277 f~rl-n~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk------------------- 336 (574)
T PTZ00437 277 FSRL-NVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITR------------------- 336 (574)
T ss_pred eeee-cCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCc-------------------
Confidence 9995 9999999999965 589999999999999999999999864
Q ss_pred CCCCCCCcccHHHHHHHHHHHhhcCCHHHH
Q psy2381 296 YLSKSPAQFNLKKLEWLNNFYIKSYDDKKL 325 (350)
Q Consensus 296 ~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~ 325 (350)
+.+.+++++|+..|++.|++.+++.+
T Consensus 337 ----~~~~i~~~~Le~~nR~~ld~~a~R~~ 362 (574)
T PTZ00437 337 ----SMNVIQISMLENTLREDLDERCERRL 362 (574)
T ss_pred ----cceEeeHHHHHHHHHHHhcccCccce
Confidence 34678889999999999988777643
No 25
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=4.9e-69 Score=497.22 Aligned_cols=221 Identities=32% Similarity=0.518 Sum_probs=203.5
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCccc--ccHHHHHHHHHHHHHcCCCCCCCCeeecCCH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINR--STLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r--~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~ 80 (350)
+|+|||||||||+|||||+|+||+||++||+++|+|+|||||||++| +.+++++.|++||+||||.||+ +++||+|+
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~-~~~qS~r~ 79 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE-VVIASDRI 79 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC-ccchhccH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999996 89999999
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
+.|++++++|+++|+||+ . .. .
T Consensus 80 ~~y~~~~~~Li~~G~aY~------------------------------~-~~------~--------------------- 101 (240)
T cd09287 80 ELYYEYARKLIEMGGAYV------------------------------H-PR------T--------------------- 101 (240)
T ss_pred HHHHHHHHHHHHcCCccc------------------------------C-cc------c---------------------
Confidence 999999999999999997 0 10 0
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g 240 (350)
.+||++ +|||||||||||++|||||||||+||++|||+|++|+++||++.|.|+|+|++.+ +|
T Consensus 102 -----------~~~~~i-----~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~~ 164 (240)
T cd09287 102 -----------GSKYRV-----WPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-EG 164 (240)
T ss_pred -----------CCcEEE-----EEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-CC
Confidence 035665 4999999999999999999999999999999999999999999999999999976 58
Q ss_pred ceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcc
Q psy2381 241 VKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQF 304 (350)
Q Consensus 241 ~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~ 304 (350)
+|||||+++ ++++.|+++|++|+||++|+..|||+. ++..+
T Consensus 165 ~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~-----------------------~~~~~ 221 (240)
T cd09287 165 GKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQ-----------------------TDATI 221 (240)
T ss_pred CeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCC-----------------------CCCcc
Confidence 999999942 579999999999999999999999853 35678
Q ss_pred cHHHHHHHHHHHhhcCCH
Q psy2381 305 NLKKLEWLNNFYIKSYDD 322 (350)
Q Consensus 305 d~~kL~~~n~~~i~~~~~ 322 (350)
++++|+.+|+++|++.++
T Consensus 222 ~~~~l~~~~r~~l~~~~~ 239 (240)
T cd09287 222 SWENLYAINRKLIDPRAN 239 (240)
T ss_pred CHHHHHHHHHHHhccCCC
Confidence 999999999999998875
No 26
>KOG1147|consensus
Probab=100.00 E-value=2e-53 Score=418.33 Aligned_cols=278 Identities=23% Similarity=0.334 Sum_probs=247.4
Q ss_pred CCcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCH
Q psy2381 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI 80 (350)
Q Consensus 1 m~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~ 80 (350)
|++|+|||+|+|+||||||||++||+|+.||..++|++|+|||||+|+++.+++++.|++||.-|||.+|. ..+.|+++
T Consensus 198 ~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~-~TyTSDyF 276 (712)
T KOG1147|consen 198 MGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDR-VTYTSDYF 276 (712)
T ss_pred cCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcce-eeechhhH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCC
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPL 151 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~ 151 (350)
+.+.+++++|+++|+||....+.|+|+..|+. +-++.||+. ++||.. ...|.+.++|-|.+
T Consensus 277 ~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~--------gv~Sk~R~~-~vEenl~iw~EM~kGs~~Gl~~CvRaKId- 346 (712)
T KOG1147|consen 277 DEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQ--------GVESKCRSN-SVEENLRIWEEMKKGSEKGLKCCVRAKID- 346 (712)
T ss_pred HHHHHHHHHHHhcCcccccCCcHHHHHHHHhc--------cccccccCC-CHHHHHHHHHHHhccchhhhhhheeeeec-
Confidence 99999999999999999999999999887764 346899999 888721 14466667777763
Q ss_pred CCceeEEeeeeeeeecCCCCCCCeEEEecC------------CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHH
Q psy2381 152 YGNITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINIL 219 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~d------------G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~ 219 (350)
++.+|.+++|+||+|++ -||||+|||+|-|+++||||.+|..|+++..+++.|+.
T Consensus 347 -------------m~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i 413 (712)
T KOG1147|consen 347 -------------MSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFI 413 (712)
T ss_pred -------------ccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHH
Confidence 45678899999999996 48999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccC
Q psy2381 220 KALGVTLPFYGHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFS 283 (350)
Q Consensus 220 ~aLg~~~P~y~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~ 283 (350)
+|||+..|...-.+.+ |...+.||||+.. +|++..+++|.+-|+|++|++..|-
T Consensus 414 ~al~LRkp~iwefsRl-N~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~--------- 483 (712)
T KOG1147|consen 414 DALGLRKPHIWEFSRL-NFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGP--------- 483 (712)
T ss_pred HHhcCCccceeehhhh-hhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCC---------
Confidence 9999999964444443 5567899999842 6899999999999999999998884
Q ss_pred HHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHH
Q psy2381 284 IKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLL 326 (350)
Q Consensus 284 ~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~ 326 (350)
+++-..++|+|+|++|++.|++++|+..+
T Consensus 484 --------------Sk~v~~meWdkiWAfNKKvIDPVapRyta 512 (712)
T KOG1147|consen 484 --------------SKNVVTMEWDKIWAFNKKVIDPVAPRYTA 512 (712)
T ss_pred --------------ccceeeeehHhhhhhcccccCCCCcccee
Confidence 34557789999999999999999998754
No 27
>KOG1148|consensus
Probab=100.00 E-value=3.4e-48 Score=384.50 Aligned_cols=293 Identities=24% Similarity=0.337 Sum_probs=232.4
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||+|+|+|+|||||+.+.-+||-||+.+||.+.||+|||+|+.+.++|.++|.+..+|||.++-. +++.|++++
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~k-vTysSDyFd 325 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYK-VTYSSDYFD 325 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCcee-eecchhHHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999887 889999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC---------CCCCCCceEEEeCCC-
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS---------IPINRKPVIRFKNPL- 151 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~---------~~~~~~~~~R~k~~~- 151 (350)
..++.|.+||++|+||+|.|+.+||++.|+ ...+ .+++|++ +.||.. .-+...+++|||.+.
T Consensus 326 qLy~~av~LIrkG~AYVcHqt~eEik~~rg------~~~~-~spwRdR-PieEsL~lF~~Mr~Gk~~eGeAtLRmK~dl~ 397 (764)
T KOG1148|consen 326 QLYELAVELIRKGKAYVCHQTAEEIKERRG------FNER-LSPWRDR-PIEESLRLFEDMRDGKYEEGEATLRMKQDLE 397 (764)
T ss_pred HHHHHHHHHHhcCceeEEeccHHHHHhhcC------CCCC-CCccccC-cHHHHHHHHHHHhcCCcCcChhheeeeeecc
Confidence 999999999999999999999999987763 2222 5788999 888832 123466799999864
Q ss_pred CCceeEEeeeeeeeecC--CCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCce
Q psy2381 152 YGNITWNDLIKGKITIS--NKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFY 229 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~--~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y 229 (350)
++....-|+|--.+.+. .+.-++|.| ||||+|++++.|+++.|||.+|..|+..+...+.||+.+|+.-.|.-
T Consensus 398 ~~~p~m~DlvayRik~~pHpRtg~kwcI-----YPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~iY~P~q 472 (764)
T KOG1148|consen 398 SGNPQMWDLVAYRIKNVPHPRTGDKWCI-----YPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEIYCPVQ 472 (764)
T ss_pred CCCccccccceeeeecCCCCCCCCceEE-----ecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhcccchh
Confidence 23333344444333221 223334444 89999999999999999999999999999999999999999988854
Q ss_pred EeeceeecCCCceeccCCCC----------------CCHHHHHHcCCCHHHHHHHHHHhCCCCCCc--cccCHHHHHHhc
Q psy2381 230 GHLPMVIDSNKVKISKRKEA----------------TDIMYYKKKGFLPEAILNYLARLGWSHGNE--EIFSIKQFCYWF 291 (350)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~----------------~~l~~l~~~G~~peal~~~l~~lG~~~~~~--~~~~~~el~~~f 291 (350)
.-.+.+ |..++.||||+-. .||.+||++|++|+||.+|++.+|.+.... ++.-++..++.+
T Consensus 473 wEYgRL-Nv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VRd~ 551 (764)
T KOG1148|consen 473 WEYGRL-NVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVRDY 551 (764)
T ss_pred hhhcee-eeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHHHH
Confidence 444443 6679999999821 589999999999999999999999865322 222233334444
Q ss_pred cccCCCCCCCCcccHHHHH
Q psy2381 292 NDCKYLSKSPAQFNLKKLE 310 (350)
Q Consensus 292 ~~~~~i~~~~~~~d~~kL~ 310 (350)
- -...++..++.++-|+.
T Consensus 552 L-n~tapR~M~VleplkVt 569 (764)
T KOG1148|consen 552 L-NDTAPRLMFVLEPLKVT 569 (764)
T ss_pred H-hccCcceEEeecceEEE
Confidence 3 33345556666666653
No 28
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.93 E-value=6.8e-26 Score=207.61 Aligned_cols=181 Identities=22% Similarity=0.282 Sum_probs=147.4
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc------------cccHHHHHHHHHHHHHcCCCCC
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN------------RSTLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~------------r~~~~~~~~i~~dL~wlGl~~d 70 (350)
..|+|+|+|||||+|++++-..++|- +...+.--++|.+.+ .....+.+.+.+++++||+.+|
T Consensus 7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d 86 (212)
T cd00671 7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD 86 (212)
T ss_pred cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 36999999999999999987777763 344555566777654 2356778899999999999999
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~ 150 (350)
. ..+.|+..+...+++++|+++|++|.- +|. .. +.+.
T Consensus 87 ~-~~~es~~~~~~~~~i~~L~~~g~~~~~-----------------------~g~-----------------~~--~~~~ 123 (212)
T cd00671 87 V-WFGESSYLGLMGKVVELLEELGLLYEE-----------------------DGA-----------------LW--LDLT 123 (212)
T ss_pred e-ecchhhhhhHHHHHHHHHHHCCCEEEe-----------------------CCc-----------------EE--Eech
Confidence 7 457777899999999999999999830 110 00 1111
Q ss_pred CCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccch---hhhhhhcccCCCcEE--EeCCCCCCCHHHHHHHHHHhCCC
Q psy2381 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYN---FCAAIDDWDMKITHV--IRGDDHINNTPRQINILKALGVT 225 (350)
Q Consensus 151 ~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~---~a~vVDD~~~gIThv--IRG~D~l~~t~~q~~l~~aLg~~ 225 (350)
. | ....|+||+|+||.|+|+ +|++++++.+++|+| |+|+||..++++|..++++||++
T Consensus 124 ~-----~------------~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~ 186 (212)
T cd00671 124 E-----F------------GDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYD 186 (212)
T ss_pred h-----h------------CCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCC
Confidence 0 0 134789999999999999 899999999999999 89999999999999999999997
Q ss_pred -CCceEee--ceeecCCCceeccCCC
Q psy2381 226 -LPFYGHL--PMVIDSNKVKISKRKE 248 (350)
Q Consensus 226 -~P~y~H~--pll~~~~g~KLSKR~g 248 (350)
.|.+.|+ +++.+.+|+|||||+|
T Consensus 187 ~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 187 EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 6789999 7998888999999986
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-25 Score=223.14 Aligned_cols=231 Identities=21% Similarity=0.236 Sum_probs=166.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc---c----------ccHHHHHHHHHHHHHcCCCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDIN---R----------STLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDtD~~---r----------~~~~~~~~i~~dL~wlGl~~d 70 (350)
.|+++.+.||||+|++++-.++.| .+..+|+.+|+|+|++ | ..+.|++++.+|++.||+.+.
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 599999999999999998666665 3336899999999986 1 257799999999999999643
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceecc-CCCHH-HHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCCCCCCCCceEEE
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYYC-YSSVE-EIESFRKKQRSFGEKPRYNRIWR-PEPGKILPSIPINRKPVIRF 147 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~C-~cs~~-~l~~~r~~~~~~~~~~~Y~g~cr-~l~~~ee~~~~~~~~~~~R~ 147 (350)
...++.|++++.+.+++++|+++|+||.- ..+.. +. .+.+.| |.+. .. +.+|. ..| -|.
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv----------~~f~~Y-G~LS~~~-~le~l--~~g----ar~ 170 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDV----------SKFKDY-GKLSGRD-SLEEL--QAG----ARV 170 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEec----------ccchhh-HhhcCCC-ChhHH--hhc----ccc
Confidence 33679999999999999999999999975 22111 11 112345 3333 21 22221 011 011
Q ss_pred eCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhhh-cccCCCcEEEe--CCC----
Q psy2381 148 KNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVIR--GDD---- 207 (350)
Q Consensus 148 k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVD-D~~~gIThvIR--G~D---- 207 (350)
.+ ...+.+..||||||+ .|.|+||+.|++. +...|-+..|. |.|
T Consensus 171 ~~----------------~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFP 234 (464)
T COG0215 171 EV----------------DEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFP 234 (464)
T ss_pred cc----------------ccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCC
Confidence 11 112567799999996 3899999999872 33344444453 455
Q ss_pred CCCCHHHHHHHHHHhCCCC-C-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy2381 208 HINNTPRQINILKALGVTL-P-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG 277 (350)
Q Consensus 208 ~l~~t~~q~~l~~aLg~~~-P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~ 277 (350)
|+.|+.+|.. .+.|-++ . .|.|.++| +.+|+||||+.|+ +|++++++. +.|++||.||+.-.+..+
T Consensus 235 HHENEiAQse--a~~g~~~~a~yWmH~G~l-~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~~lls~HYR~p 303 (464)
T COG0215 235 HHENEIAQSE--AATGVKPFAKYWMHNGFL-NIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSSHYRSP 303 (464)
T ss_pred CcccHHHHHH--hhhCCCcceeEeEEccee-eecCcCcccccCCeeEHHHHHhh-cCHHHHHHHHHHHHhCCc
Confidence 5799999974 3446333 3 47787776 8899999999997 799999988 999999999998887653
No 30
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.93 E-value=7.9e-25 Score=221.88 Aligned_cols=230 Identities=20% Similarity=0.213 Sum_probs=166.4
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCccc-------------ccHHHHHHHHHHHHHcCCCC
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDINR-------------STLSATQTIIDGMKWLGLNY 69 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDtD~~r-------------~~~~~~~~i~~dL~wlGl~~ 69 (350)
-.|+|+|++||||+|+++..++++| .+...|+..++|+|++- ..+.+.+.+.+++++|||.+
T Consensus 27 cgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~ 106 (465)
T TIGR00435 27 CGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLP 106 (465)
T ss_pred ecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999998 67789999999999752 24789999999999999998
Q ss_pred CCCCeeecCCHHHHHHHHHHHHHCCceeccC-CCHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q psy2381 70 DEGPFYQTKRINRYFEIINYLLSNDYAYYCY-SSVE-EIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRF 147 (350)
Q Consensus 70 de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~-cs~~-~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~ 147 (350)
|.-..+.|++.+.+.+++++|+++|+||.+. .+.. .+ ...+.| |.+.+. ..++. ..|. |.
T Consensus 107 d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv----------~~~~~y-G~ls~~-~~~~~--~~~~----~~ 168 (465)
T TIGR00435 107 PDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDV----------SKFKDY-GKLSKQ-DLDQL--EAGA----RV 168 (465)
T ss_pred CcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEec----------cccchh-ccCCCC-CHHHH--hccc----cc
Confidence 8755689999999999999999999999753 1100 00 111234 444333 33221 0111 10
Q ss_pred eCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhhh-cccCCCcEEE--eCCCC---
Q psy2381 148 KNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVI--RGDDH--- 208 (350)
Q Consensus 148 k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVD-D~~~gIThvI--RG~D~--- 208 (350)
. ....+.+..||+|||+ .|.|+||+.|++- ....|.+..| -|.||
T Consensus 169 ~----------------~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fp 232 (465)
T TIGR00435 169 D----------------VDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP 232 (465)
T ss_pred C----------------cccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccc
Confidence 1 1112456789999985 3799999999863 3334544344 36776
Q ss_pred -CCCHHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCC
Q psy2381 209 -INNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (350)
Q Consensus 209 -l~~t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~ 275 (350)
+.|...|... +.|.+.+. |.|..++ +.+|+|||||.|+ ++++++.+. +.|+++|.|++.-.+.
T Consensus 233 Hhene~aqs~a--~~g~~~~~~~~h~g~v-~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~~~~~ 298 (465)
T TIGR00435 233 HHENEIAQSEA--AFGKQLAKYWMHNGFL-MIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSVHYR 298 (465)
T ss_pred hHHHHHHHHHH--hcCCCCCcEEEEeeEE-EecCccccccCCCcCCHHHHHHH-CCHHHHHHHHHhCCCC
Confidence 5777777642 35755554 5776665 6899999999997 799999987 9999999999875543
No 31
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=9.2e-25 Score=221.49 Aligned_cols=223 Identities=22% Similarity=0.229 Sum_probs=166.3
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccc-------------ccHHHHHHHHHHHHHcCC-C
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINR-------------STLSATQTIIDGMKWLGL-N 68 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~r-------------~~~~~~~~i~~dL~wlGl-~ 68 (350)
..|+|+|++||||+|+++...+++|. ++..|+..++|+|++- -...+++.+.+++++||| .
T Consensus 29 cgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~~Lgi~~ 108 (463)
T PRK00260 29 CGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLP 108 (463)
T ss_pred eCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 58999999999999999999999986 6789999999998752 257899999999999999 4
Q ss_pred CCCCCeeecCCHHHHHHHHHHHHHCCceecc-----CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy2381 69 YDEGPFYQTKRINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKP 143 (350)
Q Consensus 69 ~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~ 143 (350)
+|. .++.|++.+.+.+++++|+++|+||.+ ||... .+.| |.-.+. +.+++ ..|.
T Consensus 109 ~d~-~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~--------------~~~y-g~ls~~-~~~~~--~~~~-- 167 (463)
T PRK00260 109 PDI-EPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK--------------FPDY-GKLSGR-NLDEL--QAGA-- 167 (463)
T ss_pred CCc-cccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc--------------cccc-ccCCCC-CHHHH--hccC--
Confidence 554 567899999999999999999999964 44221 2345 333222 22221 0110
Q ss_pred eEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhh-hcccCCCcEEEe--CCC
Q psy2381 144 VIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI-DDWDMKITHVIR--GDD 207 (350)
Q Consensus 144 ~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vV-DD~~~gIThvIR--G~D 207 (350)
|. +....+.+..||+|||. .|.|+||+.|++ -....|.+..|+ |.|
T Consensus 168 --~~----------------~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~D 229 (463)
T PRK00260 168 --RV----------------EVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGAD 229 (463)
T ss_pred --cC----------------CcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccc
Confidence 11 11122457789999986 379999999954 455667777765 889
Q ss_pred ----CCCCHHHHHHHHHHhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 208 ----HINNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 208 ----~l~~t~~q~~l~~aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
|+.|...|.. .+.|.+.+ .|.|..++ +.+|+|||||.|+ ++++++.+. +.|+++|.|++.-.
T Consensus 230 lifpHh~neiaqs~--a~~g~p~~~~w~H~g~v-~~~G~KMSKS~GN~i~~~dll~~-~~~d~lR~~ll~~~ 297 (463)
T PRK00260 230 LIFPHHENEIAQSE--AATGKPFANYWMHNGFV-TVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLSAH 297 (463)
T ss_pred cCCCchHhHHHHHH--HhcCCCcceEEEEccEE-ccCCCcccCcCCCCCCHHHHHHH-cCchHhHHHHHhCC
Confidence 7888888864 23573333 46777765 7899999999997 799999986 99999999998643
No 32
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=2e-24 Score=218.75 Aligned_cols=235 Identities=19% Similarity=0.219 Sum_probs=167.4
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCC----------Ccc-------------cccHHHHHHHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDT----------DIN-------------RSTLSATQTIID 60 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDt----------D~~-------------r~~~~~~~~i~~ 60 (350)
.|++++++||||+|+++...+++| .+...|+.+|+|+ |++ .-...|++.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 599999999999999998888777 3457899999999 654 124678999999
Q ss_pred HHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q psy2381 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILP 135 (350)
Q Consensus 61 dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~ 135 (350)
+++.||+.++.-.++.|++++...+++++|+++|+||. .||... .+.| |...++ +.++.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~Y-G~Ls~~-~~~~l 173 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT--------------FPSY-GSLASA-AVEDL 173 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc--------------ccch-hhhcCC-CHHHh
Confidence 99999999876556889999999999999999999996 444311 2334 333333 33331
Q ss_pred CCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec----------------CCCccchhhhhhh--cccC
Q psy2381 136 SIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA----------------DGIPTYNFCAAID--DWDM 197 (350)
Q Consensus 136 ~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~----------------dG~PtY~~a~vVD--D~~~ 197 (350)
. .|. |... ...+.+..||+||+. .|.|+||+.|++. .++
T Consensus 174 ~--~g~----~v~~----------------~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~l- 230 (490)
T PRK14536 174 Q--AGA----RIEH----------------DTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYL- 230 (490)
T ss_pred h--cCC----cCCC----------------CCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHc-
Confidence 1 110 1110 112456788999863 2789999999872 222
Q ss_pred CCcEEEe--CCC----CCCCHHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHH
Q psy2381 198 KITHVIR--GDD----HINNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYL 269 (350)
Q Consensus 198 gIThvIR--G~D----~l~~t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l 269 (350)
|-+..|. |.| |+.|.+.|.. .+.|.+.+. |.|..++ +.+|+|||||.|+ ++++++++.|+.|+++|.|+
T Consensus 231 g~~~DIH~GG~DliFPHHeneiAqs~--a~~g~~~~~~w~h~g~l-~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~l 307 (490)
T PRK14536 231 GEQCDIHIGGVDHIRVHHTNEIAQCE--AATGKPWVRYWLHHEFL-LMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFL 307 (490)
T ss_pred CCceeEEeccccCCCcchhhHHHHHH--HhcCCCcceEEEEcCEE-eecCccccccCCCcccHHHHHhcCCCHHHHHHHH
Confidence 2233332 555 4689999973 224765565 5666665 7799999999997 89999999999999999999
Q ss_pred HHhCCCCCCccccCHHHH
Q psy2381 270 ARLGWSHGNEEIFSIKQF 287 (350)
Q Consensus 270 ~~lG~~~~~~~~~~~~el 287 (350)
+.-.+..+ -.+|.+.|
T Consensus 308 ls~~yr~~--l~Fs~e~l 323 (490)
T PRK14536 308 LGGHYRSQ--LAFSWEAL 323 (490)
T ss_pred HhCCCCCC--CCCCHHHH
Confidence 87555432 22455544
No 33
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=2.5e-24 Score=217.10 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=167.6
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCC----------Ccc-------------cccHHHHHHHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDT----------DIN-------------RSTLSATQTIID 60 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDt----------D~~-------------r~~~~~~~~i~~ 60 (350)
.|||+.++||||+|+++..++++|. +...|+++|+|+ |++ .-...|.+.+.+
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5999999999999999998887773 456899999999 653 125779999999
Q ss_pred HHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q psy2381 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILP 135 (350)
Q Consensus 61 dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~ 135 (350)
+++.||+.++.-....|++++...+++++|+++|+||. +||..+ .+.| |...+. +.+++
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--------------~~~Y-G~ls~~-~l~~l 171 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--------------FKSY-GQMAGI-NLNDF 171 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--------------ccch-hhhcCC-CHHHH
Confidence 99999999998655789999999999999999999996 344222 1244 332233 33321
Q ss_pred CCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec----------------CCCccchhhhhh-------
Q psy2381 136 SIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA----------------DGIPTYNFCAAI------- 192 (350)
Q Consensus 136 ~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~----------------dG~PtY~~a~vV------- 192 (350)
....| -|+.. ...+.+..||+|||. .|+|+||+.|++
T Consensus 172 ~~~~~----~~v~~----------------~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg 231 (481)
T PRK14534 172 KDMSV----SRVEI----------------DKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFK 231 (481)
T ss_pred hhhcc----CcCCc----------------ccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcC
Confidence 00011 01111 112456788999973 289999999986
Q ss_pred ---hcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHH
Q psy2381 193 ---DDWDMKITHVIRGDDHINNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILN 267 (350)
Q Consensus 193 ---DD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~ 267 (350)
|=|..|+.++.- |+.|.+.|.. .+.|.+.+. |.|..++ ..+|+|||||.|+ +++++++++|+.|+++|.
T Consensus 232 ~~~DIH~GG~DliFP---HHene~Aqs~--a~~g~~~~~~W~H~g~l-~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~ 305 (481)
T PRK14534 232 STLDIHLGGVDHIGV---HHINEIAIAE--CYLNKKWCDMFVHGEFL-IMEYEKMSKSNNNFITIKDLEDQGFSPLDFRY 305 (481)
T ss_pred CcceEEecccccCCC---cchhHHHHHh--hhcCCCcceEEEEecEE-EecCceecccCCCcccHHHHHhcCCChhHHHH
Confidence 333444444443 5789999973 234766664 6777776 5689999999997 899999999999999999
Q ss_pred HHHHhCCCCCCccccCHHHH
Q psy2381 268 YLARLGWSHGNEEIFSIKQF 287 (350)
Q Consensus 268 ~l~~lG~~~~~~~~~~~~el 287 (350)
|++.-....+ -.+|.+.|
T Consensus 306 ~lls~~yr~~--l~Fs~e~l 323 (481)
T PRK14534 306 FCLTAHYRTQ--LKFTFNNL 323 (481)
T ss_pred HHHhCCCCCC--CCCCHHHH
Confidence 9876655432 22455444
No 34
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.92 E-value=7e-26 Score=214.85 Aligned_cols=230 Identities=20% Similarity=0.228 Sum_probs=148.5
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCccc-------------ccHHHHHHHHHHHHHcCCCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDINR-------------STLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDtD~~r-------------~~~~~~~~i~~dL~wlGl~~d 70 (350)
.||++.+.||||+|++++-.++.| .+..+++++|+|+|++- -...|++.+++||++||+.+.
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 499999999999999998666655 45679999999999751 257899999999999999998
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceeccC-CCHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEe
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYYCY-SSVE-EIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFK 148 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~C~-cs~~-~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k 148 (350)
....+.|++++.+.+++++|+++|+||.-. .+.. ++ .+.+.| |.-.+. +.+++. .+
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv----------~~~~~Y-G~Ls~~-~~~~l~--~~-------- 152 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDV----------SKFPDY-GKLSNQ-DLEDLE--AG-------- 152 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-C----------CGSTTT-TTTTT--SHHHHH--HC--------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEee----------cccccc-cccccc-chhhHH--hh--------
Confidence 777899999999999999999999999743 1110 11 112334 222222 221100 00
Q ss_pred CCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhhh-cccCCCcEEE--eCCCC----
Q psy2381 149 NPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVI--RGDDH---- 208 (350)
Q Consensus 149 ~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVD-D~~~gIThvI--RG~D~---- 208 (350)
...+....+.+..||+|||. .|+|+||+.|++. ....|-+..| .|.||
T Consensus 153 ------------~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPH 220 (300)
T PF01406_consen 153 ------------ARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPH 220 (300)
T ss_dssp ------------HHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTH
T ss_pred ------------hhcccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCC
Confidence 00111133567899999996 4899999999873 2334555555 47787
Q ss_pred CCCHHHHHHHHHHhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2381 209 INNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (350)
Q Consensus 209 l~~t~~q~~l~~aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~ 276 (350)
++|...|..- +.|-+.. .|.|..+| +.+|+||||+.|+ ++++++++. ++|+++|.+|+.-.++.
T Consensus 221 HENEiAqs~a--~~g~~~a~~W~H~g~l-~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~~hYr~ 286 (300)
T PF01406_consen 221 HENEIAQSEA--ATGKPFANYWMHNGHL-NVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLSTHYRK 286 (300)
T ss_dssp HHHHHHHHHH--HHSS-SEEEEEEE--E-EETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHTS-TTS
T ss_pred ccchHHHHHH--hhCchHHHHHHHHHHH-hhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhcCCCCC
Confidence 4777777642 3363333 47888887 6699999999997 799999976 99999999998766654
No 35
>PLN02946 cysteine-tRNA ligase
Probab=99.91 E-value=2.1e-24 Score=220.77 Aligned_cols=226 Identities=18% Similarity=0.151 Sum_probs=165.2
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHcCCCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wlGl~~d 70 (350)
.|+|+|++||||+|+++..++++| .+...|+..|+|+|++ .-...|++.+.++++.||+..+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 699999999999999999888887 3557899999999975 1257899999999999999866
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceE
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVI 145 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~ 145 (350)
...++.|++++.+.+++++|+++|+||. .||.+. .+.| |.-.+. +.++. ..|.
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~--------------f~~Y-G~Ls~~-~l~~l--~~g~---- 224 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK--------------FPEY-GKLSGR-KLEDN--RAGE---- 224 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------chhh-hhcCCC-ChhHh--hcCC----
Confidence 6567899999999999999999999996 333221 2345 333333 33321 1111
Q ss_pred EEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhhh-cccCCCcEEEe--CCC--
Q psy2381 146 RFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVIR--GDD-- 207 (350)
Q Consensus 146 R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVD-D~~~gIThvIR--G~D-- 207 (350)
|.. ....+.+..||+|||+ .|.|+||+.|++. ....|-+..|. |.|
T Consensus 225 rv~----------------~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~ 288 (557)
T PLN02946 225 RVA----------------VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 288 (557)
T ss_pred CCC----------------cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccC
Confidence 111 1113557799999995 4899999999862 12223333343 444
Q ss_pred --CCCCHHHHHHHHHHhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2381 208 --HINNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (350)
Q Consensus 208 --~l~~t~~q~~l~~aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~ 276 (350)
|++|...|..- +.|.+.- .|.|..++. .+|+|||||.|+ ++++++.+. +.|+++|.|++.-.+..
T Consensus 289 FPHHENEiAQsea--~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~-y~~dalR~~lLs~hyr~ 357 (557)
T PLN02946 289 FPHHENEIAQSCA--ACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDL-YHPLALRLFLLGTHYRS 357 (557)
T ss_pred CCcccchHHHHHH--HhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHh-cCccceeeeeeccCCCC
Confidence 57899999742 3464332 478988875 899999999997 899999986 99999999998766543
No 36
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=5.7e-24 Score=209.72 Aligned_cols=229 Identities=18% Similarity=0.156 Sum_probs=160.7
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHcCC-CC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGL-NY 69 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wlGl-~~ 69 (350)
.|+|+|++||||+|+++...+++|. +...|+..++|+|++ .-...+++.+.++++.||| .+
T Consensus 16 GpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~ 95 (384)
T PRK12418 16 GITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPP 95 (384)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6999999999999999998888874 446899999999875 1257788999999999997 66
Q ss_pred CCCCeeecCCHHHHHHHHHHHHHCCceeccCC----CHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2381 70 DEGPFYQTKRINRYFEIINYLLSNDYAYYCYS----SVE-EIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (350)
Q Consensus 70 de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~c----s~~-~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~ 144 (350)
|. .++.|++++...+++++|+++|+||.-.. +.. ++ .+.+.| |...+. ..+++....+
T Consensus 96 ~~-~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv----------~~~~~Y-G~ls~~-~~~~~~~~~~---- 158 (384)
T PRK12418 96 RD-YVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSV----------DATPQF-GYESGY-DRATMLELFA---- 158 (384)
T ss_pred Cc-cccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEec----------Cchhhc-ccccCC-CHHHHHhhhc----
Confidence 65 67999999999999999999999996321 000 01 012234 333333 2222100000
Q ss_pred EEEeCCCCCceeEEeeeeeee-ecCCCCCCCeEEEec-------------CCCccchhhhhh----------hcccCCCc
Q psy2381 145 IRFKNPLYGNITWNDLIKGKI-TISNKELDDLVIVRA-------------DGIPTYNFCAAI----------DDWDMKIT 200 (350)
Q Consensus 145 ~R~k~~~~~~~~~~D~v~G~~-~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vV----------DD~~~gIT 200 (350)
-| . ++. ...+.+..||+|||+ .|.|+||+.|++ |-|.-|++
T Consensus 159 ~~--~-------------~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~D 223 (384)
T PRK12418 159 ER--G-------------GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSD 223 (384)
T ss_pred cc--c-------------cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccc
Confidence 00 0 000 113567799999996 489999999986 33444444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhCC-CCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCC
Q psy2381 201 HVIRGDDHINNTPRQINILKALGV-TLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (350)
Q Consensus 201 hvIRG~D~l~~t~~q~~l~~aLg~-~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~ 275 (350)
++.. |++|+..|... ++|- +.+. |.|..+ ++.+|+||||+.|+ ++++++.+.|+.|+++|.|++.-.++
T Consensus 224 L~FP---HHeneiaq~~a--~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr 295 (384)
T PRK12418 224 LIFP---HHEFSAAHAEA--ATGERRFARHYVHAGM-IGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYR 295 (384)
T ss_pred cccc---hhHhHHHHHHH--hcCCCCcceEEEECCE-ECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCC
Confidence 4444 57888888742 3564 3444 555555 58899999999997 89999988899999999999754443
No 37
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=4.3e-23 Score=213.08 Aligned_cols=222 Identities=20% Similarity=0.165 Sum_probs=164.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCccc-------------ccHHHHHHHHHHHHHcCCCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDINR-------------STLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDtD~~r-------------~~~~~~~~i~~dL~wlGl~~d 70 (350)
.|+|++++||||+|+++...+++| .+...|+..|+|+|++- -...|++.+.++++.|||.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 599999999999999999888887 34578999999999751 247899999999999999988
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceec------cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYY------CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~------C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~ 144 (350)
.-.++.|++++.+.+++++|+++|+||. +||.++ .+.| |...+. +.+++. .|.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------f~~Y-G~LS~~-~~~~l~--~g~--- 393 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------FAAY-GQLSGK-SLDDLR--AGE--- 393 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc--------------cccc-ccccCC-ChHHhc--CCC---
Confidence 8667899999999999999999999995 244221 2345 433333 333211 111
Q ss_pred EEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhh----------hcccCCCcE
Q psy2381 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI----------DDWDMKITH 201 (350)
Q Consensus 145 ~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vV----------DD~~~gITh 201 (350)
|..+ ...+.+..||+|||+ .|.|+||+.|++ |=|-.|+++
T Consensus 394 -rve~----------------d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DL 456 (699)
T PRK14535 394 -RVEV----------------DGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADL 456 (699)
T ss_pred -cccc----------------ccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCcccc
Confidence 1111 112457799999995 389999999987 334444444
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCC------------C--C---ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHH
Q psy2381 202 VIRGDDHINNTPRQINILKALGVT------------L--P---FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPE 263 (350)
Q Consensus 202 vIRG~D~l~~t~~q~~l~~aLg~~------------~--P---~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~pe 263 (350)
++- |++|...|..- +.|.+ . | .|.|..++. .+|+||||+.|+ ++++++.+. +.|+
T Consensus 457 iFP---HHENEiAQseA--~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe~-ygpd 529 (699)
T PRK14535 457 QFP---HHENEIAQSVG--ATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLKQ-YDPE 529 (699)
T ss_pred CCC---CCccHHHHHHH--hhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHHh-CCHH
Confidence 444 57999999742 23542 1 1 488999885 799999999997 799999986 9999
Q ss_pred HHHHHHHHhCCC
Q psy2381 264 AILNYLARLGWS 275 (350)
Q Consensus 264 al~~~l~~lG~~ 275 (350)
++|.|++.-.+.
T Consensus 530 alRl~lLsshYR 541 (699)
T PRK14535 530 VVRFFILRAHYR 541 (699)
T ss_pred HHHHHHHcCCCC
Confidence 999999875443
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.89 E-value=2.8e-23 Score=205.94 Aligned_cols=237 Identities=17% Similarity=0.128 Sum_probs=162.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHcCCC-C
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLN-Y 69 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wlGl~-~ 69 (350)
.|+|++++||||+|+++...+++| .+...|+..|+|+|++ .-...|++.+.++++.||+. +
T Consensus 43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~ 122 (411)
T TIGR03447 43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP 122 (411)
T ss_pred CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 599999999999999999888888 3456899999999875 12477889999999999986 5
Q ss_pred CCCCeeecCCHHHHHHHHHHHHHCCceeccCCCH-HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEe
Q psy2381 70 DEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSV-EEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFK 148 (350)
Q Consensus 70 de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~-~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k 148 (350)
|. .++.|++++...+++++|+++|+||.-.... ..+.- . -.+.+.| |.-.+. ..+++....+. |
T Consensus 123 d~-~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYF--d----v~~~~~Y-G~Ls~~-~~~~~~~~~~~----~-- 187 (411)
T TIGR03447 123 RD-YIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYF--S----IEATEQF-GYESGY-DRATMLELFAE----R-- 187 (411)
T ss_pred Cc-ccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEE--e----ccchhcc-ccccCC-CHHHHHhhhcc----c--
Confidence 54 6789999999999999999999999522100 00000 0 0011233 222222 22210000000 0
Q ss_pred CCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhhh-cccCCCcEEEe--CCCC----
Q psy2381 149 NPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVIR--GDDH---- 208 (350)
Q Consensus 149 ~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVD-D~~~gIThvIR--G~D~---- 208 (350)
.+... ...+.+..||+|||+ .|.|+||+.|++. ....|-+..|+ |.|+
T Consensus 188 -----~~~~~-------~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpH 255 (411)
T TIGR03447 188 -----GGDPD-------RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPH 255 (411)
T ss_pred -----ccCcc-------cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccc
Confidence 00000 113457799999996 4899999999873 34445566666 6666
Q ss_pred CCCHHHHHHHHHHhCC-CCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCC
Q psy2381 209 INNTPRQINILKALGV-TLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (350)
Q Consensus 209 l~~t~~q~~l~~aLg~-~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~ 275 (350)
+.|+..|..- +.|- +.+. |.|..+ ++.+|+||||+.|+ ++++++.+.|+.|+++|.|++.-.++
T Consensus 256 heneiaq~~A--~~g~~~~~~~w~H~g~-l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr 322 (411)
T TIGR03447 256 HEFSAAHAEA--ATGVRRMARHYVHAGM-IGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYR 322 (411)
T ss_pred hHhHHHHHHH--hcCCCCcceEEEECCE-ECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCC
Confidence 5677777632 3465 4455 556665 58899999999997 79999998899999999999754443
No 39
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=3.9e-22 Score=204.57 Aligned_cols=199 Identities=23% Similarity=0.330 Sum_probs=151.8
Q ss_pred cceEee-CCCCCCcCchhhHHHHHHHHHHHHH--cCC---eEEEEecCCCcc-------------cccHHHHHHHHHHHH
Q psy2381 3 IVRTRF-APSPTGNLHIGGIRTALFSWAYARH--FNG---IFILRIEDTDIN-------------RSTLSATQTIIDGMK 63 (350)
Q Consensus 3 ~v~~RF-APsPtG~lHiG~~rtal~n~l~Ar~--~~G---~~iLRieDtD~~-------------r~~~~~~~~i~~dL~ 63 (350)
+|++-| +|+|||+|||||+|++++.+.+||- ..| .++.-++|.+.+ +..+.+.+.+.++|+
T Consensus 112 ~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~ 191 (507)
T PRK01611 112 KVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLD 191 (507)
T ss_pred EEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666 8999999999999999998888884 334 566667888743 456788999999999
Q ss_pred HcCCCCCCCCeeecCC--HHHHHHHHHHHHHCCcee-ccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2381 64 WLGLNYDEGPFYQTKR--INRYFEIINYLLSNDYAY-YCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPIN 140 (350)
Q Consensus 64 wlGl~~de~~~~QS~r--~~~y~~~~~~L~~~G~aY-~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~ 140 (350)
+||+.+|. .++.|+. .+.+.+++++|.++|++| .- +|
T Consensus 192 ~LgI~~D~-~~~es~~~~~~~~~~~~~~L~~~G~~y~~~-----------------------~G---------------- 231 (507)
T PRK01611 192 RLGVHFDV-WFSESELYYNGKVDEVVEDLKEKGLLYVES-----------------------DG---------------- 231 (507)
T ss_pred HcCCeeeE-EeecCcchhcchHHHHHHHHHHCCCEEEee-----------------------CC----------------
Confidence 99999986 3344432 467899999999999999 20 11
Q ss_pred CCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccch---hhhhhhcccCCCcEE--EeCCCCCCCHHHH
Q psy2381 141 RKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYN---FCAAIDDWDMKITHV--IRGDDHINNTPRQ 215 (350)
Q Consensus 141 ~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~---~a~vVDD~~~gIThv--IRG~D~l~~t~~q 215 (350)
++-|++.. | | +-.|+||+|+||.|||. +|...+-... .+++ |.|.||....+++
T Consensus 232 ---a~~~~~~~-----~-----~-------~~~~~vl~ksdG~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~ 290 (507)
T PRK01611 232 ---ALWVRLTE-----F-----G-------DDKDRVLIKSDGTYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRL 290 (507)
T ss_pred ---cEEEEchh-----h-----C-------CCCCeEEEECCCCccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHH
Confidence 00122211 1 1 11489999999999997 7777766654 5677 6999999999999
Q ss_pred HHHHHHhCCCCCc---eEee--ceeecCCCceeccCCCC-CCHHHHHHcCCCH
Q psy2381 216 INILKALGVTLPF---YGHL--PMVIDSNKVKISKRKEA-TDIMYYKKKGFLP 262 (350)
Q Consensus 216 ~~l~~aLg~~~P~---y~H~--pll~~~~g~KLSKR~g~-~~l~~l~~~G~~p 262 (350)
..+.++||+.++. +.|. +++.+.+|+|||||+|+ +++.++.++++..
T Consensus 291 ~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~ 343 (507)
T PRK01611 291 KAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGR 343 (507)
T ss_pred HHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHH
Confidence 9999999987553 7884 68888999999999996 7899999884443
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.84 E-value=3.4e-20 Score=194.36 Aligned_cols=238 Identities=18% Similarity=0.219 Sum_probs=160.5
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH------HcCCeEEEEecCCCccc--------------ccHHHHHHHHHHHHHcCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR------HFNGIFILRIEDTDINR--------------STLSATQTIIDGMKWLGLN 68 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar------~~~G~~iLRieDtD~~r--------------~~~~~~~~i~~dL~wlGl~ 68 (350)
.|+++++.||||+||++...+++| .+...|+..|+|+|++- -...|++.+.+|++.|||.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 499999999999999999877776 23468999999999761 1357899999999999999
Q ss_pred CCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q psy2381 69 YDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVE-EIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRF 147 (350)
Q Consensus 69 ~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~-~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~ 147 (350)
++.-..+.|++++...+++++|+++|+||.-..+.. ++.+.... ...| |. + +++... ... .+
T Consensus 147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~------~~~Y-g~---L-~p~~~~-----~~~-~~ 209 (651)
T PTZ00399 147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA------GHVY-PK---L-EPESVA-----DED-RI 209 (651)
T ss_pred CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc------hhhH-Hh---h-ChhhcC-----CHH-HH
Confidence 887677889999999999999999999996322110 11111100 0123 11 2 221000 000 00
Q ss_pred eCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhh--hcccCCCcEEEe--CCCC--
Q psy2381 148 KNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWDMKITHVIR--GDDH-- 208 (350)
Q Consensus 148 k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vV--DD~~~gIThvIR--G~D~-- 208 (350)
... ++.+ . +....+.+..||+||+. .|.|+||..|+| .|++ |-+..|+ |.|+
T Consensus 210 ~~g-~~~l--~-----~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~l-g~~~DIh~gG~DL~F 280 (651)
T PTZ00399 210 AEG-EGAL--G-----KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNIL-GDPIDIHSGGIDLKF 280 (651)
T ss_pred hcc-cCCc--c-----ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHc-CCcceeeccCCCCCC
Confidence 000 0000 0 01112445678888875 389999999976 3433 3344454 5555
Q ss_pred --CCCHHHHHHHHHHhCC-CCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2381 209 --INNTPRQINILKALGV-TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (350)
Q Consensus 209 --l~~t~~q~~l~~aLg~-~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~ 276 (350)
++|...|..- +.|- +.+ .|.|.+.+ +.+|+|||||.|+ ++++++++. |.|+++|.|++.-.|..
T Consensus 281 PHHeNEiAQseA--~~~~~~~v~y~~H~G~L-~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~lLs~~~~~ 349 (651)
T PTZ00399 281 PHHDNELAQSEA--YFDKHQWVNYFLHSGHL-HIKGLKMSKSLKNFITIRQALSK-YTARQIRLLFLLHKWDK 349 (651)
T ss_pred CcchhHHHHHHH--hhCCCCCCcEEEEEEEE-EeccchhhhcCCCcccHHHHHHH-cChHHHHHHHHhcCCCC
Confidence 7899999843 2454 233 47787885 7899999999997 899999988 99999999998655543
No 41
>KOG2007|consensus
Probab=99.83 E-value=1.7e-20 Score=185.22 Aligned_cols=230 Identities=18% Similarity=0.211 Sum_probs=165.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH------HcCCeEEEEecCCCcc---ccc---------------HHHHHHHHHHHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR------HFNGIFILRIEDTDIN---RST---------------LSATQTIIDGMKW 64 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar------~~~G~~iLRieDtD~~---r~~---------------~~~~~~i~~dL~w 64 (350)
.|+.+..-||||||+++--.++-| +++..|+++|+|+|++ |.. .-|++.+..||..
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~ 141 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAA 141 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 599999999999999997666555 4678999999999976 332 2377999999999
Q ss_pred cCCCCCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy2381 65 LGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVE-EIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKP 143 (350)
Q Consensus 65 lGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~-~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~ 143 (350)
|.+.+.....+-|++++....++++++++|.||....|.. ++.+ -+..| |+|-.. . +. ...|
T Consensus 142 LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k---------f~~~Y-gKL~G~-~-~~--~~~g--- 204 (586)
T KOG2007|consen 142 LNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK---------FPHSY-GKLVGQ-R-KN--LQEG--- 204 (586)
T ss_pred hCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc---------ccchh-hhhcCc-h-hh--cccC---
Confidence 9988777678999999999999999999999998644332 1211 01124 333211 0 00 0000
Q ss_pred eEEEeCCCCCceeEEeeeeeeee-cCCCCCCCeEEEec-------------CCCccchhhhhhh-cccCCCcEEEe--CC
Q psy2381 144 VIRFKNPLYGNITWNDLIKGKIT-ISNKELDDLVIVRA-------------DGIPTYNFCAAID-DWDMKITHVIR--GD 206 (350)
Q Consensus 144 ~~R~k~~~~~~~~~~D~v~G~~~-~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVD-D~~~gIThvIR--G~ 206 (350)
+ |..+ ..++...||+|||+ .|.|+||+.|+|. -+..|-+..|. |.
T Consensus 205 --------E----------g~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~ 266 (586)
T KOG2007|consen 205 --------E----------GVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGI 266 (586)
T ss_pred --------c----------CccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcc
Confidence 1 1111 23456789999996 4899999999873 23445555554 34
Q ss_pred C----CCCCHHHHHHHHHHhCCCC--CceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy2381 207 D----HINNTPRQINILKALGVTL--PFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG 277 (350)
Q Consensus 207 D----~l~~t~~q~~l~~aLg~~~--P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~ 277 (350)
| |++|..+|... ++.-++ --|.|.+.+ ..+|+||||+.++ +||++.++. |+|.++|.+++.-.|..+
T Consensus 267 DL~FPHHeNEiAQ~eA--~~~~~~wVnYflHtGhL-~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~~~wr~~ 340 (586)
T KOG2007|consen 267 DLAFPHHENEIAQSEA--AFDDSQWVNYFLHTGHL-TINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLLHQWRSP 340 (586)
T ss_pred cccCCCcccHHHHHHH--HhcCCccceeEEEcCee-eeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHHHHhcCc
Confidence 4 68999999853 222221 247888887 6689999999876 899999976 999999999999888653
No 42
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=1.6e-16 Score=162.94 Aligned_cols=257 Identities=18% Similarity=0.089 Sum_probs=152.4
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF-----NGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~-----~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wl 65 (350)
+++==.|+|||.+||||+|+++..++++|.. ...|+.-+||.|.+ .-...+.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3455579999999999999999998888853 45788888888753 23577889999999999
Q ss_pred CCCCCCCCeeecC--CHHHHHHHHHHHHHCCceec-----cCCCHHHHHH-HHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q psy2381 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY-----CYSSVEEIES-FRKKQRSFGEKPRYNRIWRPEPGKILPSI 137 (350)
Q Consensus 66 Gl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~-~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~ 137 (350)
||.+|. .++.++ +.+..+++.++|.++|++|. .||+.++-.- .++. ..+. .++..|.. +++-.
T Consensus 84 ~I~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l--~~~~--p~~~~~~~--~~~~~-- 154 (511)
T PRK11893 84 NISYDD-FIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESEL--IEDG--YRCPPTGA--PVEWV-- 154 (511)
T ss_pred CCCcCC-ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHh--cCCC--CCCCCCCC--cceEE--
Confidence 999996 344444 78999999999999999997 3444432110 0000 0000 12223322 11110
Q ss_pred CCCCCceEEEeCCCCCceeE---------Eeeeeeee-ecCCCCCCCeEEEecCCC-----ccc------h--------h
Q psy2381 138 PINRKPVIRFKNPLYGNITW---------NDLIKGKI-TISNKELDDLVIVRADGI-----PTY------N--------F 188 (350)
Q Consensus 138 ~~~~~~~~R~k~~~~~~~~~---------~D~v~G~~-~~~~~~~~D~Vl~R~dG~-----PtY------~--------~ 188 (350)
.-....+++..-.+....+ .+..+..+ ..-...+.|+.|.|.+.. |.+ . +
T Consensus 155 -~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~ 233 (511)
T PRK11893 155 -EEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYL 233 (511)
T ss_pred -ecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHH
Confidence 0111122221100000000 00000000 001234789999993321 222 1 1
Q ss_pred hh-------hh-----hcccCCCcEEEeCCCCCCC-HHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCCC-CCHH
Q psy2381 189 CA-------AI-----DDWDMKITHVIRGDDHINN-TPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIM 253 (350)
Q Consensus 189 a~-------vV-----DD~~~gIThvIRG~D~l~~-t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~ 253 (350)
+. .+ ..+. ..+..+-|.|++.. +....++..++|.+.|. +.|..++. .+|+|||||.|+ +++.
T Consensus 234 s~~~~p~~~~~~~~~~~~~~-~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G~KMSKS~GN~i~~~ 311 (511)
T PRK11893 234 TALGYPDDEELLAELFNKYW-PADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDGEKMSKSLGNVIDPF 311 (511)
T ss_pred hHhccccccccchhHHHhcC-CCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECCeeecccCCcEEcHH
Confidence 11 10 1111 12224457888642 22233334566877784 66667775 489999999997 7899
Q ss_pred HHHHcCCCHHHHHHHHHHhC
Q psy2381 254 YYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 254 ~l~~~G~~peal~~~l~~lG 273 (350)
++.+. +.++++|.||+..+
T Consensus 312 dll~~-~g~DalR~~ll~~~ 330 (511)
T PRK11893 312 DLVDE-YGVDAVRYFLLREI 330 (511)
T ss_pred HHHHH-cCcHHHHHHHHhcC
Confidence 99987 89999999999864
No 43
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.69 E-value=4.3e-17 Score=140.10 Aligned_cols=134 Identities=23% Similarity=0.220 Sum_probs=104.9
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCC
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF-----NGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKR 79 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~-----~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r 79 (350)
++..+|+|||++||||+|+++..+.++|.+ +..++..++|.|.+...+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 367899999999999999999998888875 7899999999998765544322
Q ss_pred HHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEe
Q psy2381 80 INRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWND 159 (350)
Q Consensus 80 ~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D 159 (350)
.++.+++...-. + +|+.
T Consensus 58 --------------------~~~~~~~~~~~~---------------------~------------~~~~---------- 74 (143)
T cd00802 58 --------------------GENAKAFVERWI---------------------E------------RIKE---------- 74 (143)
T ss_pred --------------------CCCHHHHHHHHH---------------------H------------HHHH----------
Confidence 222233211100 0 0000
Q ss_pred eeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCC---cEEEeCCCCCCCHHHHHHHHHHhCCC-CCceEeecee
Q psy2381 160 LIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKI---THVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMV 235 (350)
Q Consensus 160 ~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gI---ThvIRG~D~l~~t~~q~~l~~aLg~~-~P~y~H~pll 235 (350)
.+. |++.+++|+...++ |++++|.|+..+...+..+.+++|+. .|.+.|.+++
T Consensus 75 ~~~-----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l 131 (143)
T cd00802 75 DVE-----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRV 131 (143)
T ss_pred HHH-----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCe
Confidence 000 99999999999999 99999999999999999999999875 6899999999
Q ss_pred ecCCCceeccCC
Q psy2381 236 IDSNKVKISKRK 247 (350)
Q Consensus 236 ~~~~g~KLSKR~ 247 (350)
...+|+|||||+
T Consensus 132 ~~~~g~KmSks~ 143 (143)
T cd00802 132 MGADGTKMSKSK 143 (143)
T ss_pred ECCCCCcCCCCC
Confidence 988889999985
No 44
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.63 E-value=2.2e-15 Score=145.66 Aligned_cols=239 Identities=20% Similarity=0.177 Sum_probs=142.5
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc--------------------------cccHHH
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN--------------------------RSTLSA 54 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~--------------------------r~~~~~ 54 (350)
+==+|+|||.+||||+++.++.+.++|. +...|+.-+|+.+.+ .-.+.+
T Consensus 5 ~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T cd00668 5 TTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEM 84 (312)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH
Confidence 3447999999999999998888877774 334566677664422 113568
Q ss_pred HHHHHHHHHHcCCCCC--CCC-eeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy2381 55 TQTIIDGMKWLGLNYD--EGP-FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPG 131 (350)
Q Consensus 55 ~~~i~~dL~wlGl~~d--e~~-~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~ 131 (350)
.+.|.++|+.||+..| ... ....++.+...+++++|.++|++|.-.-+. +. ...-...| +..++. -
T Consensus 85 ~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~---~~~~f~~~-~~l~~~-~ 153 (312)
T cd00668 85 SGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RI---TEQWFFDM-PKFKEK-L 153 (312)
T ss_pred HHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Ee---eeeEEEEc-HHHHHH-H
Confidence 8899999999999776 421 223366788999999999999999721100 00 00000000 000000 0
Q ss_pred CCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEecC----CCccchhhh----hh-----hcccC-
Q psy2381 132 KILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRAD----GIPTYNFCA----AI-----DDWDM- 197 (350)
Q Consensus 132 ~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~d----G~PtY~~a~----vV-----DD~~~- 197 (350)
.++. ..+. + .|+ ..+..+..--....|+.|.|.. +.|.+++-| ++ -.+..
T Consensus 154 ~~~~--~~~~-----~-~p~--------~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~ 217 (312)
T cd00668 154 LKAL--RRGK-----I-VPE--------HVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEE 217 (312)
T ss_pred HHHH--hcCC-----c-CCh--------HHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccchhhccHHHHHHcCCCcc
Confidence 0000 0000 0 010 0000000000122389998864 567888777 21 11111
Q ss_pred --------CCcEEEeCCCCC-CCHHHHHHHHHHhCCC-CC-c-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHH
Q psy2381 198 --------KITHVIRGDDHI-NNTPRQINILKALGVT-LP-F-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEA 264 (350)
Q Consensus 198 --------gIThvIRG~D~l-~~t~~q~~l~~aLg~~-~P-~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~pea 264 (350)
..+.-+-|.|++ .......+...+++.. +| . +.| +++...+|+|||||.|+ +++.++.++ +.|++
T Consensus 218 ~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~da 295 (312)
T cd00668 218 KEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEK-YGADA 295 (312)
T ss_pred chhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHH-cCcHH
Confidence 234445688987 4444444445667654 44 3 455 88877777999999997 889999988 99999
Q ss_pred HHHHHHHhC
Q psy2381 265 ILNYLARLG 273 (350)
Q Consensus 265 l~~~l~~lG 273 (350)
+|.||+..+
T Consensus 296 ~R~~l~~~~ 304 (312)
T cd00668 296 LRYYLTSLA 304 (312)
T ss_pred HHHHHHhcC
Confidence 999998754
No 45
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.56 E-value=8.9e-14 Score=134.95 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=74.5
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHcC
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF-----NGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLG 66 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~-----~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wlG 66 (350)
+|==.|+|||.+||||+++.++.++++|.. ...|+.-+||.+.+ ...+.+.+.|.+++++||
T Consensus 4 it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 83 (319)
T cd00814 4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLN 83 (319)
T ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 444579999999999999999999988842 34677777887543 335778999999999999
Q ss_pred CCCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 67 LNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 67 l~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+.+|. .++.+ .+.+...+++++|.++|.+|.
T Consensus 84 I~~D~-~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 84 ISFDY-FIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CcCCC-CeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99996 33333 367788999999999999996
No 46
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.55 E-value=3.2e-13 Score=138.67 Aligned_cols=232 Identities=19% Similarity=0.183 Sum_probs=148.9
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecCCCcccc----------------------------
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF-----NGIFILRIEDTDINRS---------------------------- 50 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~-----~G~~iLRieDtD~~r~---------------------------- 50 (350)
+++--+++|||.+||||++..+..+.++|.. ...|+.=-||-|+-|.
T Consensus 25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~ 104 (510)
T PRK00750 25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC 104 (510)
T ss_pred EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence 5556677999999999999999988888743 3467777788875222
Q ss_pred ----cHHHHHHHHHHHHHcCCCCCCCCeeecC--CHHHHHHHHHHHHHC-CceeccCCCHHHHHHHHHHHhhcCCCCC--
Q psy2381 51 ----TLSATQTIIDGMKWLGLNYDEGPFYQTK--RINRYFEIINYLLSN-DYAYYCYSSVEEIESFRKKQRSFGEKPR-- 121 (350)
Q Consensus 51 ----~~~~~~~i~~dL~wlGl~~de~~~~QS~--r~~~y~~~~~~L~~~-G~aY~C~cs~~~l~~~r~~~~~~~~~~~-- 121 (350)
.+.+.+.+.+.|+.+||++| .+++++ +...|.+.+...+++ +.+. +-|...+.. ..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~d--~~~~t~~y~~g~~~~~i~~~l~~~~~i~------~il~~~~~~----~~~~~~~ 172 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEYE--FISATECYKSGRYDEAILTALENRDEIM------EILLPYLGE----ERQATYS 172 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCceE--EEehhhhhccCchHHHHHHHHHhHHHHH------HHHHHhcCC----ccCCCee
Confidence 24567778889999999998 466666 445666666655553 2221 222222211 11111
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCceEEE-eCC-CCCceeEEee--eeeeeecCCCCCCCeEEEecCCCccchhhhhhh
Q psy2381 122 ----YNRIWRPEPGKILPSIPINRKPVIRF-KNP-LYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAID 193 (350)
Q Consensus 122 ----Y~g~cr~l~~~ee~~~~~~~~~~~R~-k~~-~~~~~~~~D~--v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVD 193 (350)
++..|... ..... ..+ +.+.+.|.+. -.|..+... ..|--.|-.-=+.-
T Consensus 173 P~~pic~~cg~~-------------~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~----------g~~KL~Wr~dW~~r 229 (510)
T PRK00750 173 PFLPICPKCGKV-------------LTTPVISYDAEAGTVTYDCECGHEGEVPVTG----------GHGKLQWKVDWPMR 229 (510)
T ss_pred eeeeeCCCCCcc-------------ceEEEEEEeCCCCEEEEEcCCCCEEEEecCC----------CCcccCCCCCcHHH
Confidence 22334332 11111 111 1234455432 112222211 11222222111111
Q ss_pred cccCCCcEEEeCCCCCC-CHHHHHHHHH-HhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHH
Q psy2381 194 DWDMKITHVIRGDDHIN-NTPRQINILK-ALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLA 270 (350)
Q Consensus 194 D~~~gIThvIRG~D~l~-~t~~q~~l~~-aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~ 270 (350)
=...|||..+.|.||.. +......+.+ +||+++|...|.+++...+|+|||||+|+ +++.++.+. +.|+++|.|+.
T Consensus 230 W~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~l~ 308 (510)
T PRK00750 230 WAALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLFMF 308 (510)
T ss_pred HHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHHHH
Confidence 12368999999999999 9999999998 99999999899999988779999999997 789999876 99999998877
Q ss_pred H
Q psy2381 271 R 271 (350)
Q Consensus 271 ~ 271 (350)
.
T Consensus 309 ~ 309 (510)
T PRK00750 309 A 309 (510)
T ss_pred h
Confidence 4
No 47
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=8e-14 Score=143.34 Aligned_cols=265 Identities=22% Similarity=0.227 Sum_probs=165.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------cccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wl 65 (350)
++|-=-|.|||.+||||+++.|.++.+||.+ .|.=++=+.-|| |+.-...+.+.+.+++++|
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 5777789999999999999999999999964 465444445554 3344677888999999999
Q ss_pred CCCCCCC-CeeecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCCC-CCCCC-----------
Q psy2381 66 GLNYDEG-PFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRY-NRIWR----------- 127 (350)
Q Consensus 66 Gl~~de~-~~~QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~Y-~g~cr----------- 127 (350)
+|.+|.- .+..+++.+.-+++.++|.++|..|. -||.+++..- +.+| .|+|.
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl----------~dr~v~g~cp~cg~~~arGD~ 157 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFL----------PDRYVEGTCPKCGGEDARGDQ 157 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccc----------cchheeccCCCcCccccCcch
Confidence 9999983 23455677888999999999999997 4666654421 1122 22332
Q ss_pred ------CCCCCCCCC----CCCCCCceEE------EeCCCCCceeEEeeeeeeee-----------------cCCCCCCC
Q psy2381 128 ------PEPGKILPS----IPINRKPVIR------FKNPLYGNITWNDLIKGKIT-----------------ISNKELDD 174 (350)
Q Consensus 128 ------~l~~~ee~~----~~~~~~~~~R------~k~~~~~~~~~~D~v~G~~~-----------------~~~~~~~D 174 (350)
.+ .|.+.. ...|..+.+| |+.+. |.|.+..-+. +-...+.|
T Consensus 158 Ce~Cg~~~-~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~-----~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d 231 (558)
T COG0143 158 CENCGRTL-DPTELINPVCVISGATPEVREEEHYFFRLSK-----FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKD 231 (558)
T ss_pred hhhccCcC-CchhcCCCeeEeeCCCcccccceeEEEEHHH-----hHHHHHHHHHhCccccCChHHHHHHHHHHHccCcc
Confidence 23 443311 1223222222 23221 2222211111 11245889
Q ss_pred eEEEecCC-----------Cccch-------hhhh------------hhcc----cCCCcEEEeCCCCCCCHHHHHHHHH
Q psy2381 175 LVIVRADG-----------IPTYN-------FCAA------------IDDW----DMKITHVIRGDDHINNTPRQINILK 220 (350)
Q Consensus 175 ~Vl~R~dG-----------~PtY~-------~a~v------------VDD~----~~gIThvIRG~D~l~~t~~q~~l~~ 220 (350)
+.|.|.+. -..|. +-++ -+.+ .-.+-|+| |.|- ++.|..++=
T Consensus 232 ~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfI-GKDi---i~FHav~wP 307 (558)
T COG0143 232 LSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFI-GKDI---IRFHAVYWP 307 (558)
T ss_pred cceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEe-cccc---CcchhhHHH
Confidence 99999541 11221 0111 1111 22334555 4655 566666554
Q ss_pred ----HhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHh
Q psy2381 221 ----ALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYW 290 (350)
Q Consensus 221 ----aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~ 290 (350)
+.|.+.|.-.+..-.+..+|+||||+.|. +...++.+. +.++++|.||++-.- .+....||.+++++.
T Consensus 308 amL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p-~~~D~dFs~~~f~~r 380 (558)
T COG0143 308 AMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELP-EGSDGDFSWEDFVER 380 (558)
T ss_pred HHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCC-CCCCCCCCHHHHHHH
Confidence 44777886444444446689999999997 888998888 999999999998432 222334788877664
No 48
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.54 E-value=7.2e-14 Score=144.28 Aligned_cols=265 Identities=20% Similarity=0.195 Sum_probs=149.3
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--C---CeEEEEecCCCcc-------------cccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--N---GIFILRIEDTDIN-------------RSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~---G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wl 65 (350)
++|--.|+|||.+||||+++++..+.++|.. . ..|+.-+||.+.+ ...+.+.+.+.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4677789999999999999999999998743 3 4567777776543 33577899999999999
Q ss_pred CCCCCCCCee--ecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCC------CCCC---CCCCC
Q psy2381 66 GLNYDEGPFY--QTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKP------RYNR---IWRPE 129 (350)
Q Consensus 66 Gl~~de~~~~--QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~------~Y~g---~cr~l 129 (350)
|+.+|.. ++ .+.+.+...++.++|.++|++|. =+|..++-.-. +. ...|.-| .+.. .|...
T Consensus 82 gI~~D~~-~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~-~~-~v~g~cp~c~~~~~~g~~ce~cg~~ 158 (530)
T TIGR00398 82 NISFDRF-IRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLP-DR-YVEGTCPKCGSEDARGDHCEVCGRH 158 (530)
T ss_pred CCCCCCC-ccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCc-hh-hhcCCCCCCCCcccccchhhhcccc
Confidence 9999963 33 33478889999999999999995 34444322110 00 0001100 0000 12111
Q ss_pred CCCCCCC----CCCCCCceEE------EeCCC--CC----------ceeEEeeeeeee-ecCCCCCCCeEEEecCC---C
Q psy2381 130 PGKILPS----IPINRKPVIR------FKNPL--YG----------NITWNDLIKGKI-TISNKELDDLVIVRADG---I 183 (350)
Q Consensus 130 ~~~ee~~----~~~~~~~~~R------~k~~~--~~----------~~~~~D~v~G~~-~~~~~~~~D~Vl~R~dG---~ 183 (350)
..+.+.. ...|.+..+| |+++. +. ...+...+...+ .+-...+.|+.|-|... .
T Consensus 159 ~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGi 238 (530)
T TIGR00398 159 LEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGI 238 (530)
T ss_pred CCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCe
Confidence 0111100 0123333222 22211 00 000000000000 00012366788877432 1
Q ss_pred --ccch--------------hhhh-hh--------ccc---CCC-cEEEeCCCCCC-CHHHHHHHHHHhCCCCCc-eEee
Q psy2381 184 --PTYN--------------FCAA-ID--------DWD---MKI-THVIRGDDHIN-NTPRQINILKALGVTLPF-YGHL 232 (350)
Q Consensus 184 --PtY~--------------~a~v-VD--------D~~---~gI-ThvIRG~D~l~-~t~~q~~l~~aLg~~~P~-y~H~ 232 (350)
|.+. ++.. .. +.. .+. +--+-|.|.+. .+.....++.++|+++|. +..+
T Consensus 239 pvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~ 318 (530)
T TIGR00398 239 PVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSH 318 (530)
T ss_pred eCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEEEee
Confidence 1111 1110 00 000 011 11234777753 233344566778988774 5566
Q ss_pred ceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 233 PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 233 pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
++++.. |+|||||.|+ +++.++.++ +.++++|.|++..+
T Consensus 319 g~v~~~-g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~~l~~~~ 358 (530)
T TIGR00398 319 GYLTVE-GGKMSKSLGNVVDPSDLLAR-FGADILRYYLLKER 358 (530)
T ss_pred ccEEEC-CceecccCCceecHHHHHHH-cCchHHHHHHhhCC
Confidence 777654 9999999997 789999987 99999999999865
No 49
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.2e-13 Score=140.91 Aligned_cols=200 Identities=16% Similarity=0.111 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCe--eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCC-CCCC
Q psy2381 52 LSATQTIIDGMKWLGLNYDEGPF--YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNR-IWRP 128 (350)
Q Consensus 52 ~~~~~~i~~dL~wlGl~~de~~~--~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g-~cr~ 128 (350)
+...+.|.++|..||+.+|. .+ ..|-+-....++++.|.++|++|. ++| .|-.
T Consensus 239 ~~~l~~~k~~l~~l~V~fD~-~~~E~e~~~~~~~~~vv~~L~~~~~~~e-----------------------~~GA~~vd 294 (577)
T COG0018 239 DLSLEGIKETLDRLGVKFDV-YDSEGESFYNGKVEKVVEDLEEKGLLYE-----------------------DDGALVVD 294 (577)
T ss_pred HHHHHHHHHHHHHhCcccce-eeccchhhhcccHHHHHHHHHhcCCEee-----------------------eCCeEEEe
Confidence 34567788899999999997 22 233344567888999999999984 011 1211
Q ss_pred CCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccc---hhhhhhhcccCCCcEEE--
Q psy2381 129 EPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTY---NFCAAIDDWDMKITHVI-- 203 (350)
Q Consensus 129 l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY---~~a~vVDD~~~gIThvI-- 203 (350)
+ . +++ ..++..|.||.|+||.++| ++|+..+-+..|.+.+|
T Consensus 295 l-~--------------~~~-------------------~~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~~~~d~~IyV 340 (577)
T COG0018 295 L-L--------------KFK-------------------KFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYV 340 (577)
T ss_pred h-h--------------hhh-------------------hcCCCCCeEEEEcCCCeeeehhHHHHHHHHHhcCCCEEEEE
Confidence 1 0 000 1234578999999999999 68999988878888886
Q ss_pred eCCCCCCCHHHHHHHHHHhCCCCCc--eEee--ceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q psy2381 204 RGDDHINNTPRQINILKALGVTLPF--YGHL--PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGN 278 (350)
Q Consensus 204 RG~D~l~~t~~q~~l~~aLg~~~P~--y~H~--pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~ 278 (350)
-|.||...-++-..+++++|+..+. ..|. .++.+.+|.|||||.|. +++++++++ .. +....-+... -..+
T Consensus 341 ~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde-~~-era~~~~~~~-~~~~- 416 (577)
T COG0018 341 LGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE-AG-ERAPEEMEEK-EEKN- 416 (577)
T ss_pred eCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH-HH-HHhhhHhhhh-hhhh-
Confidence 6999988777777777889998774 5666 66667789999999996 799998875 11 0000000000 0000
Q ss_pred cccc--CHHHHHHhccccCCCCCCCCcccHHHHHHHHH
Q psy2381 279 EEIF--SIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNN 314 (350)
Q Consensus 279 ~~~~--~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~ 314 (350)
.++. ---+.+..+. +..-+.++..||+++...+++
T Consensus 417 ~~iA~~vgi~Avry~~-l~~~~~~~~~Fd~d~~lsfeg 453 (577)
T COG0018 417 EEIAEVVGIDAVRYAD-LSRSRDKDYVFDWDKALSFEG 453 (577)
T ss_pred HHHHHHhhhhhHHHHH-HhcCCCCCcEeeHHHHHhccC
Confidence 0000 0012344555 666666677777777766665
No 50
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.53 E-value=1.3e-13 Score=143.50 Aligned_cols=147 Identities=17% Similarity=0.249 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCCe--eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy2381 51 TLSATQTIIDGMKWLGLNYDEGPF--YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRP 128 (350)
Q Consensus 51 ~~~~~~~i~~dL~wlGl~~de~~~--~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~ 128 (350)
++...+.|.++|++||+.+|. .+ ..|-+.....+++++|.++|.+|.- | ..|
T Consensus 234 ~~~~l~~~~~~~~~l~V~fD~-~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-----------------G------a~~-- 287 (566)
T TIGR00456 234 VEYSLEGIKETLARLNIHFDS-FVWEGESVKNGMVPKVLEDLKEKGLVVED-----------------G------ALW-- 287 (566)
T ss_pred HHHHHHHHHHHHHHcCCceee-eeccccccccccHHHHHHHHHHCCCEEEc-----------------C------CEE--
Confidence 344667788888999999986 22 2333445567888888888887720 0 011
Q ss_pred CCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccc---hhhhhhhcccCCCcEEE--
Q psy2381 129 EPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTY---NFCAAIDDWDMKITHVI-- 203 (350)
Q Consensus 129 l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY---~~a~vVDD~~~gIThvI-- 203 (350)
+ +.+. | | .+..|.||+|+||.+|| ++|...+-...+.+.+|
T Consensus 288 ----------------~--~~~~-----~-----~------d~~~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~d~iI~V 333 (566)
T TIGR00456 288 ----------------L--DLTL-----F-----G------DKDKDRVLQKSDGTYLYLTRDIAYHLDKLERGFDKMIYV 333 (566)
T ss_pred ----------------E--Eccc-----c-----c------CCCCCeEEEECCCCceechhhHHHHHHHHhcCCCEEEEE
Confidence 1 1110 0 0 01147999999999999 46776666555888886
Q ss_pred eCCCCCCCHHHHHHHHHHhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHc
Q psy2381 204 RGDDHINNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK 258 (350)
Q Consensus 204 RG~D~l~~t~~q~~l~~aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~ 258 (350)
-|.||...-++-..+.++||++.| ...|++.-+. +|.|||||+|+ +++.++.++
T Consensus 334 ~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V-~~~kmSkr~Gn~V~~~dll~~ 389 (566)
T TIGR00456 334 WGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMV-PLGSMKTRRGNVISLDNLLDE 389 (566)
T ss_pred ecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEE-ECCCCCccCCceeeHHHHHHH
Confidence 799999888888889999999877 5778776543 56899999996 677766654
No 51
>PLN02286 arginine-tRNA ligase
Probab=99.52 E-value=3.2e-13 Score=140.58 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=122.5
Q ss_pred HHHHHHHHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy2381 55 TQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKIL 134 (350)
Q Consensus 55 ~~~i~~dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee 134 (350)
.+.+.+.+.+||++.|. +-.|.+-+...++++.|.++|.+|.. +|
T Consensus 242 ~~~~~~~y~~l~V~fd~--~ges~y~~~~~~vi~~L~~~g~~~e~-----------------------dG---------- 286 (576)
T PLN02286 242 RREFEKVYQRLRVELEE--KGESFYNPYIPGVIEELESKGLVVES-----------------------DG---------- 286 (576)
T ss_pred HHHHHHHHHHhCCeeee--cCchhhhhhHHHHHHHHHHCCCEEee-----------------------CC----------
Confidence 35566778888988886 35555556667888888888877731 01
Q ss_pred CCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCC-CCeEEEecCCCccc---hhhhhhhcccC-CCcEEE--eCCC
Q psy2381 135 PSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKEL-DDLVIVRADGIPTY---NFCAAIDDWDM-KITHVI--RGDD 207 (350)
Q Consensus 135 ~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~-~D~Vl~R~dG~PtY---~~a~vVDD~~~-gIThvI--RG~D 207 (350)
. .++ ..+ .. .|.||+|+||.+|| ++|...+-+.. +.+.+| -|.|
T Consensus 287 ------a-~~v--~l~--------------------~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~ 337 (576)
T PLN02286 287 ------A-RVI--FVE--------------------GFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVG 337 (576)
T ss_pred ------c-eEe--ecc--------------------CCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCc
Confidence 0 011 010 01 47899999999999 57888777765 678776 6999
Q ss_pred CCCCHHHHHHHHHHhCCCCC----ceEee--ceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC----CCC
Q psy2381 208 HINNTPRQINILKALGVTLP----FYGHL--PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG----WSH 276 (350)
Q Consensus 208 ~l~~t~~q~~l~~aLg~~~P----~y~H~--pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG----~~~ 276 (350)
|...-.+-..+.++||+..+ ...|+ .++...+|+|||||.|. +++++|+++- -+....-+..-+ ++.
T Consensus 338 q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea--~~~a~~~~~~~~~~~~~~~ 415 (576)
T PLN02286 338 QQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEA--KSRSKAALIERGKDSEWTP 415 (576)
T ss_pred HHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHH--HHHHHHHHHhccCccccch
Confidence 98877777888899998633 46676 55755788899999996 8999998851 111111121111 110
Q ss_pred CCcc----ccCHHHHHHhccccCCCCCCCCcccHHHHHHH
Q psy2381 277 GNEE----IFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWL 312 (350)
Q Consensus 277 ~~~~----~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~ 312 (350)
.+.+ .+.. +.+..|. +..=..++..||++++..+
T Consensus 416 ~~~~~~a~~vg~-~Airy~~-L~~~~~~~~~Fd~d~~l~~ 453 (576)
T PLN02286 416 EELEQAAEAVGY-GAVKYAD-LKNNRLTNYTFSFDQMLDL 453 (576)
T ss_pred hhHHHHHHHhhh-hhhhhhh-hhcCCCCCCccCHHHHHhh
Confidence 0000 0001 2355566 7777788889999986655
No 52
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.51 E-value=1.6e-13 Score=145.00 Aligned_cols=268 Identities=20% Similarity=0.134 Sum_probs=150.0
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CC---eEEEEecCCCcc-------------cccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G---~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wl 65 (350)
++|==.|+|||.+||||+++++..+.++|.. .| .|+.-.||.+.+ .....+.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4555679999999999999999999999843 34 565565655432 23578999999999999
Q ss_pred CCCCCCCCeeecC--CHHHHHHHHHHHHHCCceecc-----CCCHHHHHH-HHHHHhhcCCCCCCCCCCCC--CCCCCCC
Q psy2381 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIES-FRKKQRSFGEKPRYNRIWRP--EPGKILP 135 (350)
Q Consensus 66 Gl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~-~r~~~~~~~~~~~Y~g~cr~--l~~~ee~ 135 (350)
||.+|. .++.|+ +.+.-+++.++|.++|++|.- +|..++-.- .+.. .. .++|-. . +++-
T Consensus 87 gI~~D~-f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l--~~------~~~c~~cg~-~~e~- 155 (648)
T PRK12267 87 DISYDK-FIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQL--VD------GGKCPDCGR-EVEL- 155 (648)
T ss_pred CCCCCC-CeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHh--cc------CCcCCCCCC-cCeE-
Confidence 999997 444444 667789999999999999972 444332210 0000 00 023421 1 2211
Q ss_pred CCCCCCCceEEEeCCC--CCceeE---------Eeeeeeeee--cCCCCCCCeEEEecC---CCc--------cch----
Q psy2381 136 SIPINRKPVIRFKNPL--YGNITW---------NDLIKGKIT--ISNKELDDLVIVRAD---GIP--------TYN---- 187 (350)
Q Consensus 136 ~~~~~~~~~~R~k~~~--~~~~~~---------~D~v~G~~~--~~~~~~~D~Vl~R~d---G~P--------tY~---- 187 (350)
.....+. |+++. +....+ ....+..+. +-...+.|+.|-|.. |.| .|.
T Consensus 156 --~~~~~~f--~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA 231 (648)
T PRK12267 156 --VKEESYF--FRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDA 231 (648)
T ss_pred --EecceEE--EEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccc
Confidence 0111222 33321 000000 000111111 112246788888852 221 111
Q ss_pred ----hhhhh--h----ccc--CCCcEEEeCCCCCC-CHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC-CCHH
Q psy2381 188 ----FCAAI--D----DWD--MKITHVIRGDDHIN-NTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIM 253 (350)
Q Consensus 188 ----~a~vV--D----D~~--~gIThvIRG~D~l~-~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~ 253 (350)
+++.- + +.. -.-+..+-|.|.+. .+...-.++.++|+++|.-..+.-.+..+|+||||+.|+ ++..
T Consensus 232 ~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~ 311 (648)
T PRK12267 232 LLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPE 311 (648)
T ss_pred hHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEECCceecccCCcccCHH
Confidence 11110 0 000 01122334677753 222222345577888886444433334579999999997 7888
Q ss_pred HHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHH
Q psy2381 254 YYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFC 288 (350)
Q Consensus 254 ~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~ 288 (350)
++.+. +.++++|.||+.-+-...+ .-++.+++.
T Consensus 312 d~l~~-ygaD~lR~~L~~~~~~~~D-~~fs~~~~~ 344 (648)
T PRK12267 312 ELVDR-YGLDALRYYLLREVPFGSD-GDFSPEALV 344 (648)
T ss_pred HHHHH-cCCcHHHHHHHhcCCCCCC-CCCCHHHHH
Confidence 98876 9999999999975421122 235665553
No 53
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.50 E-value=2.4e-13 Score=141.26 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q psy2381 52 LSATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPG 131 (350)
Q Consensus 52 ~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~ 131 (350)
+...+.|.++|++||+.+|. ....|.+.+...+++++|.++|.+|. +
T Consensus 234 ~~~l~~~~~~~~~l~V~fD~-~~~es~~~~~~~~v~~~L~~~g~~~e--------------------------------~ 280 (562)
T PRK12451 234 HESLKEFSRIYELLGVEFTN-FQGEAFYNDLMEDFIGILEEHDLLEE--------------------------------S 280 (562)
T ss_pred HHHHHHHHHHHHHcCCCcee-ecchHhhhhhHHHHHHHHHHCCCEEe--------------------------------c
Confidence 44556778888999999995 44566655666778888888887763 0
Q ss_pred CCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccc---hhhhhhhcccC-CCcEEE--eC
Q psy2381 132 KILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTY---NFCAAIDDWDM-KITHVI--RG 205 (350)
Q Consensus 132 ~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY---~~a~vVDD~~~-gIThvI--RG 205 (350)
.| ++-++.+. | | . .|.||+|+||.+|| ++|...+-... +.+.+| -|
T Consensus 281 -------dG---a~~~~~~~-----~-----g-------~-~~~vl~ksDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g 332 (562)
T PRK12451 281 -------EG---ALVVNLEE-----E-----G-------M-PPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVG 332 (562)
T ss_pred -------CC---eEEEEecc-----c-----C-------C-CceEEEeCCCccccchhHHHHHHHHhhccCCCEEEEEeC
Confidence 01 11111111 0 1 1 57999999999999 57777777764 888886 69
Q ss_pred CCCCCCHHHHHHHHHHhCCCCC-ceEeece--eecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccc
Q psy2381 206 DDHINNTPRQINILKALGVTLP-FYGHLPM--VIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEI 281 (350)
Q Consensus 206 ~D~l~~t~~q~~l~~aLg~~~P-~y~H~pl--l~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~ 281 (350)
.||...-++-..+.++||+..+ .+.|+.. + +.+|+|||||+|. +++++|+++. -+.....+..-+-.-.+.+
T Consensus 333 ~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V-~~~g~kmStR~G~~v~l~dLldea--~~~a~~~~~~~~~~l~~~~- 408 (562)
T PRK12451 333 PEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLI-LKDGKKMSTRKGRVVLLEEVLEEA--IELAKQNIEEKNPNLKQKE- 408 (562)
T ss_pred CcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeE-ecCCCCCcCCCCCeeEHHHHHHHH--HHHHHHHHHhhccccccHH-
Confidence 9998888888888899998754 4777743 5 3478899999995 8999998752 1122222222110000000
Q ss_pred cCHH-----HHHHhccccCCCCCCCCcccHHHHHHHH
Q psy2381 282 FSIK-----QFCYWFNDCKYLSKSPAQFNLKKLEWLN 313 (350)
Q Consensus 282 ~~~~-----el~~~f~~~~~i~~~~~~~d~~kL~~~n 313 (350)
... +.+..|. +..-..++..||++++..++
T Consensus 409 -~~a~~vg~~Airy~~-l~~~~~~~~~Fd~d~~l~~~ 443 (562)
T PRK12451 409 -EVAKQVGVGAVIFHD-LKNERMHNIEFSLENMLKFE 443 (562)
T ss_pred -HHHHHhccceeeeHH-hhcCCCCCceECHHHHhCcC
Confidence 011 1233455 77777888999999966554
No 54
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.50 E-value=3.4e-13 Score=142.96 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=76.4
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------cccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wl 65 (350)
++|==.|+|||.+||||+++++..+.+||.+ .|.=++-+..|| +......+.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4455567999999999999999999999853 343333333333 2234677999999999999
Q ss_pred CCCCCCCCeee--cCCHHHHHHHHHHHHHCCceec-----cCCCHHH
Q psy2381 66 GLNYDEGPFYQ--TKRINRYFEIINYLLSNDYAYY-----CYSSVEE 105 (350)
Q Consensus 66 Gl~~de~~~~Q--S~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~ 105 (350)
|+.+|. .++. .++.+..+++.++|.++|.+|. .||..++
T Consensus 85 ~i~~d~-f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 130 (673)
T PRK00133 85 GISFDN-YGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKG 130 (673)
T ss_pred CCCCCC-CccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCC
Confidence 999996 3333 3588999999999999999997 5665543
No 55
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.50 E-value=2.8e-12 Score=125.75 Aligned_cols=239 Identities=18% Similarity=0.157 Sum_probs=147.6
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccc----------------------------
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINRS---------------------------- 50 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~r~---------------------------- 50 (350)
+++-=+++|||.+||||++..+..+.++|. +...|+.-.||-|+-|.
T Consensus 21 ~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~ 100 (353)
T cd00674 21 YVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCE 100 (353)
T ss_pred EEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCH
Confidence 344458899999999999999988888874 34578888888876332
Q ss_pred --cHHHHHHHHHHHHHcCCCCCCCCeeecCC--HHHHHHHHH-HHHHCCceeccCCCHHHHHHHHHHHhhcCCCC--CCC
Q psy2381 51 --TLSATQTIIDGMKWLGLNYDEGPFYQTKR--INRYFEIIN-YLLSNDYAYYCYSSVEEIESFRKKQRSFGEKP--RYN 123 (350)
Q Consensus 51 --~~~~~~~i~~dL~wlGl~~de~~~~QS~r--~~~y~~~~~-~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~--~Y~ 123 (350)
.+.+.+.+.+.|+.||+.+|- +++|+- ...|.+.+. .|.+.+.+. +-|...+....+..=.| .+.
T Consensus 101 ~~~d~~~~~f~~~l~~lgi~~d~--~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 101 SYAEHFERPFEESLEKLGIEVEF--ISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCeeee--eecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeeec
Confidence 456778888999999999984 555542 235555544 445555443 23333322111100000 122
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee--eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcE
Q psy2381 124 RIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITH 201 (350)
Q Consensus 124 g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~--v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gITh 201 (350)
..|..+ + . .++-+.. +.+.+.|.+. -.|+.... ...|--.|-.-=+..=...||+.
T Consensus 173 ~~cg~~-~-~---------~v~~~d~-~~~~v~y~c~cG~~g~~~~~----------~g~~KL~Wr~dW~~rW~~l~Vd~ 230 (353)
T cd00674 173 EKCGKD-T-T---------TVEAYDA-KAGTVTYKCECGHEETVDIR----------TGRGKLTWRVDWPMRWAILGVDF 230 (353)
T ss_pred CCcCcc-e-e---------EEEEEeC-CCCeEEEEcCCCCEEEEeec----------CCCcccCCCCCchhhhhhcCCCE
Confidence 334322 1 0 1111111 1234444431 11222211 12232223222222122368888
Q ss_pred EEeCCCCCCC---HHHHHHHHH-HhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 202 VIRGDDHINN---TPRQINILK-ALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 202 vIRG~D~l~~---t~~q~~l~~-aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
=+-|.||..+ -..-..+.+ +||+++|......+++..+|.|||||+|+ +++.++++. +.|+++|.|++...
T Consensus 231 E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~~~l~~~ 306 (353)
T cd00674 231 EPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRYLYARRK 306 (353)
T ss_pred EeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHHHHHhCC
Confidence 8999999877 777788888 99999997666688877777899999997 799999988 99999999998755
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.49 E-value=2.3e-13 Score=124.96 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=57.1
Q ss_pred chhhhhh--hcccCC-CcEEEeCCCCC----CCHHHHHHHHHH-hCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHH
Q psy2381 186 YNFCAAI--DDWDMK-ITHVIRGDDHI----NNTPRQINILKA-LGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYY 255 (350)
Q Consensus 186 Y~~a~vV--DD~~~g-IThvIRG~D~l----~~t~~q~~l~~a-Lg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l 255 (350)
||+.|++ ...+.. ++.-.-|.||+ .|...|. .| .|-+.+ .|.|. .+++.+|+|||||+|+ +++.++
T Consensus 113 Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~---~a~~g~~~~~~~~h~-~~v~~~g~KMSKs~Gn~v~~~dl 188 (213)
T cd00672 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQS---EAATGKPFARYWLHT-GHLTIDGEKMSKSLGNFITVRDA 188 (213)
T ss_pred hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHH---HHHhCCCCCcEEEEE-EEEeccCcchhhcCCCccCHHHH
Confidence 8888876 233322 33223467765 4454444 44 355444 46677 4457899999999997 789999
Q ss_pred HHcCCCHHHHHHHHHHhCC
Q psy2381 256 KKKGFLPEAILNYLARLGW 274 (350)
Q Consensus 256 ~~~G~~peal~~~l~~lG~ 274 (350)
.+. +.|+++|.|++.-.+
T Consensus 189 l~~-~~~da~R~~~l~~~~ 206 (213)
T cd00672 189 LKK-YDPEVLRLALLSSHY 206 (213)
T ss_pred HHH-cCHHHHHHHHHhCCc
Confidence 985 999999999986554
No 57
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.47 E-value=7e-13 Score=137.71 Aligned_cols=94 Identities=22% Similarity=0.248 Sum_probs=75.0
Q ss_pred ceEeeCCCCCCcCchhhHHHH-HHHHHHHHHc-----CCeEEEEecCCCcc-------------cccHHHHHHHHHHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTA-LFSWAYARHF-----NGIFILRIEDTDIN-------------RSTLSATQTIIDGMKW 64 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rta-l~n~l~Ar~~-----~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~w 64 (350)
++|==.|+|||.+||||+++. +..+.++|.. ...|+.-+||.+.+ .....+.+.+.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999998 8888888742 34566666665533 1247789999999999
Q ss_pred cCCCCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 65 LGLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 65 lGl~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
||+.||. .++.+ ++.+..+++.++|.++|++|.
T Consensus 86 l~i~~d~-~~~t~~~~~~~~~~~~~~~L~~~G~~y~ 120 (556)
T PRK12268 86 LGISYDL-FTRTTSPNHHEVVQEFFLKLYENGYIYK 120 (556)
T ss_pred cCCcCCC-CcCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 9999996 45555 778999999999999999997
No 58
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.47 E-value=2.3e-13 Score=133.13 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=70.9
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecC----CCcc--------------------------cccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF-----NGIFILRIED----TDIN--------------------------RSTL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~-----~G~~iLRieD----tD~~--------------------------r~~~ 52 (350)
=+|+|||.+||||+++.++.+.++|.+ ...|+.-+|| |+.+ .-..
T Consensus 8 ~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
T cd00818 8 GPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFAL 87 (338)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHH
Confidence 379999999999999999988888843 3456667776 4321 1134
Q ss_pred HHHHHHHHHHHHcCC--CCCCC-CeeecCCHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLGL--NYDEG-PFYQTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlGl--~~de~-~~~QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.+.+.+.++|+.||+ +||.. .+..+++.+...++..+|.++|++|.
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~ 136 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYR 136 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEec
Confidence 678999999999999 78762 12344888999999999999999996
No 59
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.46 E-value=5.9e-13 Score=142.90 Aligned_cols=280 Identities=16% Similarity=0.115 Sum_probs=156.0
Q ss_pred ceEeeCCCCCCcCchhhHHH-HHHHHHHHHHc--CCeEEEEecCCCc----------------ccccHHHHHHHHHHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRT-ALFSWAYARHF--NGIFILRIEDTDI----------------NRSTLSATQTIIDGMKW 64 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rt-al~n~l~Ar~~--~G~~iLRieDtD~----------------~r~~~~~~~~i~~dL~w 64 (350)
++|==.|+|||.+||||+++ .|..+.+||.+ .|.=++-+.-||. +.-...+.+.+.+.+++
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666799999999999995 68789999965 4655555566652 22346677788889999
Q ss_pred cCCCCCCCCee-ecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHH-HHHHhh-----cCCCCCCCC---CCCC-
Q psy2381 65 LGLNYDEGPFY-QTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESF-RKKQRS-----FGEKPRYNR---IWRP- 128 (350)
Q Consensus 65 lGl~~de~~~~-QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~-r~~~~~-----~~~~~~Y~g---~cr~- 128 (350)
|||.||.-... ..++...-+++..+|.++|+.|. =||.+++..-. +..... ++....|.. .|..
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~ 179 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKL 179 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhcccc
Confidence 99999973222 22455777888899999999998 35555432211 110000 111111211 1322
Q ss_pred CCCCCCCCC----CCCCCceEE------EeCCCC--CceeEEe--eeeeee---------ecCCCCCCCeEEEec-----
Q psy2381 129 EPGKILPSI----PINRKPVIR------FKNPLY--GNITWND--LIKGKI---------TISNKELDDLVIVRA----- 180 (350)
Q Consensus 129 l~~~ee~~~----~~~~~~~~R------~k~~~~--~~~~~~D--~v~G~~---------~~~~~~~~D~Vl~R~----- 180 (350)
+ .+.|+.. ..|.+..+| |+++.- ....|.+ .+.+.. .+-...+.|..|-|.
T Consensus 180 ~-~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGi 258 (801)
T PLN02610 180 L-NPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGV 258 (801)
T ss_pred C-ChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcc
Confidence 2 3333211 234444433 333210 0000000 011110 111245778888884
Q ss_pred ----CC---Cccch--------hhhh------hhcccC-----CCcEEEeCCCCCCCHHHHHHHH----HHhC--CCCCc
Q psy2381 181 ----DG---IPTYN--------FCAA------IDDWDM-----KITHVIRGDDHINNTPRQINIL----KALG--VTLPF 228 (350)
Q Consensus 181 ----dG---~PtY~--------~a~v------VDD~~~-----gIThvIRG~D~l~~t~~q~~l~----~aLg--~~~P~ 228 (350)
|| ...|. +++. -.++.. .+.|+| |.|- ++.|..++ .++| |+.|.
T Consensus 259 pvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi---~~fH~i~wPa~L~a~g~~~~~p~ 334 (801)
T PLN02610 259 PVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFM-GKDN---VPFHTVMFPSTLLGTGENWTMMK 334 (801)
T ss_pred cCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEE-eeec---chhHHHHHHHHHHhCCCCcCCCC
Confidence 12 11221 1211 011111 123555 4554 55665444 4557 45776
Q ss_pred eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 229 YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 229 y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
-.+..-.++.+|+||||+.|+ +...++.+.+|.++++|.||++-+-. ....-||.+++++
T Consensus 335 ~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~-~~D~dFs~~~f~~ 395 (801)
T PLN02610 335 TISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPE-VSDTLFTWADLQA 395 (801)
T ss_pred EEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCC-CCCCcCCHHHHHH
Confidence 444444457799999999997 78899998789999999999986532 2222356655544
No 60
>PLN02224 methionine-tRNA ligase
Probab=99.45 E-value=3.2e-12 Score=133.72 Aligned_cols=250 Identities=19% Similarity=0.135 Sum_probs=142.7
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CC---eEEEEecCCCcc-------------cccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G---~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wl 65 (350)
+++=-.|+|||.+||||+++++..+.+||.. .| .|+.-+||.+.+ .-..++.+.+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 3445578999999999999999999999853 34 466666665422 23456778888999999
Q ss_pred CCCCCCCCeeecC--CHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy2381 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIP 138 (350)
Q Consensus 66 Gl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~ 138 (350)
||.||. .++.++ +.+.-+++..+|.++|++|. -+|.+++..-. +..... +.. +.+-.. +++-.
T Consensus 152 ~I~~D~-f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~-~~~l~~---~~~-~~~~~~-~~~~~--- 221 (616)
T PLN02224 152 DIAYDK-FIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKD-EKELLE---NNC-CPVHQM-PCVAR--- 221 (616)
T ss_pred CCCCCc-CeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCC-HHHHcC---CCC-CCCCCC-cceEE---
Confidence 999996 445444 66788888999999999997 23433322100 000000 011 111111 21110
Q ss_pred CCCCceEEEeCCCCCceeEEeeeeeee-----------------ecCCCCCCCeEEEecC---CCcc--------ch---
Q psy2381 139 INRKPVIRFKNPLYGNITWNDLIKGKI-----------------TISNKELDDLVIVRAD---GIPT--------YN--- 187 (350)
Q Consensus 139 ~~~~~~~R~k~~~~~~~~~~D~v~G~~-----------------~~~~~~~~D~Vl~R~d---G~Pt--------Y~--- 187 (350)
....+. |+.+. |.|.+..-+ .+-...+.|..|-|.. |.|. |.
T Consensus 222 ~e~~~f--f~Ls~-----~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfD 294 (616)
T PLN02224 222 KEDNYF--FALSK-----YQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFD 294 (616)
T ss_pred ecceEE--EEhHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehh
Confidence 011122 33321 111110000 0112347788888842 3222 11
Q ss_pred -----hhhhh---hc--c-------cCCCcEEEeCCCCCCC-HHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCC
Q psy2381 188 -----FCAAI---DD--W-------DMKITHVIRGDDHINN-TPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKE 248 (350)
Q Consensus 188 -----~a~vV---DD--~-------~~gIThvIRG~D~l~~-t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g 248 (350)
++.+- ++ . .-..-|+ =|.|.+.. +...-+++.++|++.|. ...... ++.+|+||||+.|
T Consensus 295 Al~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~-iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~-l~~eG~KMSKS~G 372 (616)
T PLN02224 295 ALLGYISALTEDNKQQNLETAVSFGWPASLHL-IGKDILRFHAVYWPAMLMSAGLELPKMVFGHGF-LTKDGMKMGKSLG 372 (616)
T ss_pred hHHHHHHHhcccccccccchhhccCCCcceEE-EeecccccHHHHHHHHHHHCCCCCCcEEEeccc-EecCCccccccCC
Confidence 11000 00 0 0011233 36787642 22233333456888885 333345 4789999999999
Q ss_pred C-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 249 A-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 249 ~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+ +++.++.++ +.++++|.||+.-+
T Consensus 373 N~i~p~e~l~~-ygaD~~R~yLl~~~ 397 (616)
T PLN02224 373 NTLEPFELVQK-FGPDAVRYFFLREV 397 (616)
T ss_pred ccCCHHHHHHH-cCcHHHHHHHHhcC
Confidence 7 788999887 99999999999864
No 61
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.44 E-value=4.2e-13 Score=130.03 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=70.7
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccc-------------ccHHHHHHHHHHHHHcC
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINR-------------STLSATQTIIDGMKWLG 66 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~r-------------~~~~~~~~i~~dL~wlG 66 (350)
+|==.|+|||.+||||+|+++...+++|. +...|+.-+||.+.+- -.+.+.+.+.++|+.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34457999999999999999998888874 3356888888887442 25788999999999999
Q ss_pred CCCCCCCeeecCCHHHHHHHH----HHHHHCCceec
Q psy2381 67 LNYDEGPFYQTKRINRYFEII----NYLLSNDYAYY 98 (350)
Q Consensus 67 l~~de~~~~QS~r~~~y~~~~----~~L~~~G~aY~ 98 (350)
+..|-.+++.+ ..+.|.+.+ .+|.++|++|.
T Consensus 84 i~~d~~~~~~t-~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 84 FSYDWRREFTT-CDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred cceeccccccc-CCHHHHHHHHHHHHHHHHCCCEEe
Confidence 98874222222 345555555 49999999997
No 62
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.43 E-value=1.3e-11 Score=117.90 Aligned_cols=242 Identities=17% Similarity=0.168 Sum_probs=162.8
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC-------CcccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT-------DINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINR 82 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-------D~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~ 82 (350)
.|||.|||||+..|+.+|...+..|.+.++.|.|. +..+...++...+..++.++|++|+.. ++.||+..+.
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~ 86 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPEH 86 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHHH
Confidence 58899999999999999999999899999999997 456778889999999999999999764 5679998753
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~ 162 (350)
|.- ...+.|.||..+++.. ..|.. . . +.+. .+
T Consensus 87 ~~l--------~~~l~~~~~~~~l~r~----------~~fk~----~-~----------------~~~~--~~------- 118 (280)
T cd00806 87 YEL--------AWLLSCVVTFGELERM----------TGFKD----K-S----------------AQGE--SV------- 118 (280)
T ss_pred HHH--------HHHHhCcCCHHHHHhc----------cchhh----h-h----------------ccCC--CC-------
Confidence 332 2347899999988532 11100 0 0 0000 00
Q ss_pred eeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCceEee--ce
Q psy2381 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGHL--PM 234 (350)
Q Consensus 163 G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~y~H~--pl 234 (350)
.-|..+|-.--+.|=...+.++|..|.|...+...-..+.+.++ ++.|...|. ++
T Consensus 119 -----------------~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~ 181 (280)
T cd00806 119 -----------------NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAF 181 (280)
T ss_pred -----------------cchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCc
Confidence 11344444444444445566999999999888888888889998 788998888 99
Q ss_pred eecCCC--ceeccCCCC--CCHHHHHHcCCCHHHHHHHHHHhCCCCC---------CccccCHHHHHHhccccCCCCCCC
Q psy2381 235 VIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLARLGWSHG---------NEEIFSIKQFCYWFNDCKYLSKSP 301 (350)
Q Consensus 235 l~~~~g--~KLSKR~g~--~~l~~l~~~G~~peal~~~l~~lG~~~~---------~~~~~~~~el~~~f~~~~~i~~~~ 301 (350)
|.+-+| +||||+.+. +.|. -+|+.|+.-+...=.++. +.+.-.+-++...|.
T Consensus 182 i~~l~g~~~KMSKS~~~~~I~L~------d~~~~i~~KI~~a~td~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 246 (280)
T cd00806 182 LPGLQGPSKKMSKSDPNNAIFLT------DSPKEIKKKIMKAATDGGRTEHRRDGGGPGVSNLVEIYSAFF--------- 246 (280)
T ss_pred cccCCCCCCcccCCCCCCeEEee------CCHHHHHHHHHhccCCCCCceecCCCCCCCcChHHHHHHHHh---------
Confidence 888776 499999873 4443 268888888876433221 122223444444443
Q ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy2381 302 AQFNLKKLEWLNNFYIKSYDDKKLLNLIQPII 333 (350)
Q Consensus 302 ~~~d~~kL~~~n~~~i~~~~~~~~~~~~~~~~ 333 (350)
.-|.+++..+....-..+...++++.+..-+
T Consensus 247 -~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i 277 (280)
T cd00806 247 -NDDDEELEEIDEYRSGGLGYGECKKLLAEAI 277 (280)
T ss_pred -CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 1234666655333344566667776665443
No 63
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.43 E-value=1.8e-12 Score=128.90 Aligned_cols=93 Identities=22% Similarity=0.160 Sum_probs=67.7
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc--------------------------------ccc
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN--------------------------------RST 51 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~--------------------------------r~~ 51 (350)
+==.|+|||.|||||+++++....+||.+ .|.-++.+..+|.- .-.
T Consensus 6 ~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
T cd00817 6 DTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWK 85 (382)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHH
Confidence 33479999999999999999999999854 46555555555431 013
Q ss_pred HHHHHHHHHHHHHcCCCCC--CC-CeeecCCHHHHHHHHHHHHHCCceec
Q psy2381 52 LSATQTIIDGMKWLGLNYD--EG-PFYQTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 52 ~~~~~~i~~dL~wlGl~~d--e~-~~~QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
..+.+.+.++++.||+..| .. .+...++.+.-+.+..+|.++|++|.
T Consensus 86 ~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 86 EESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4578889999999998544 52 12333455666777899999999997
No 64
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.37 E-value=3e-13 Score=134.74 Aligned_cols=272 Identities=24% Similarity=0.241 Sum_probs=142.7
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------cccccHHHHHHHHHHHHHcC
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------INRSTLSATQTIIDGMKWLG 66 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wlG 66 (350)
+|==.|+|||.|||||+.++|.++.+||.+ .|.=++-+.-|| |+.....+.+.|.+.++.+|
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 344469999999999999999999999854 354344444444 33456778899999999999
Q ss_pred CCCCCCCeeec---CCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCC------CCCC---CCCC-
Q psy2381 67 LNYDEGPFYQT---KRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKP------RYNR---IWRP- 128 (350)
Q Consensus 67 l~~de~~~~QS---~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~------~Y~g---~cr~- 128 (350)
|.+|. +.++ .+.+..+++.++|.++|.+|. =||..++-.. .+ ....|.-| .+.. .|..
T Consensus 83 I~~D~--F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl-~e-~~v~g~CP~C~~~~a~g~~Ce~cG~~ 158 (391)
T PF09334_consen 83 ISYDR--FIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFL-PE-SFVEGTCPYCGSDKARGDQCENCGRP 158 (391)
T ss_dssp ---SE--EEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE--G-GGETCEETTT--SSCTTTEETTTSSB
T ss_pred CCCcc--eeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCccc-cc-ceeeccccCcCccccCCCcccCCCCC
Confidence 99996 3333 445667888999999999997 2443332210 00 00011101 0111 2322
Q ss_pred CCCCCCCC----CCCCCCceEE------EeCCCCCceeEEeeeeeee----------------ecCCCCCCCeEEEecC-
Q psy2381 129 EPGKILPS----IPINRKPVIR------FKNPLYGNITWNDLIKGKI----------------TISNKELDDLVIVRAD- 181 (350)
Q Consensus 129 l~~~ee~~----~~~~~~~~~R------~k~~~~~~~~~~D~v~G~~----------------~~~~~~~~D~Vl~R~d- 181 (350)
. .++|+. ...|.+..+| |+.+. |.|.+.--+ .+-...+.|+.|-|.-
T Consensus 159 ~-~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~-----~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~ 232 (391)
T PF09334_consen 159 L-EPEELINPVCKICGSPPEVREEENYFFKLSK-----FRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLD 232 (391)
T ss_dssp E-ECCCSECEEETTTS-B-EEEEEEEEEE-GGG-----GHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTS
T ss_pred c-ccccccCCccccccccCccccceEEEEehHH-----hHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCC
Confidence 2 223321 1234444444 33332 111111000 0112346788887542
Q ss_pred -CC--------ccchh---------hh--hh--------------hcccCCCcEEEeCCCCCCCHHHHHHHH----HHhC
Q psy2381 182 -GI--------PTYNF---------CA--AI--------------DDWDMKITHVIRGDDHINNTPRQINIL----KALG 223 (350)
Q Consensus 182 -G~--------PtY~~---------a~--vV--------------DD~~~gIThvIRG~D~l~~t~~q~~l~----~aLg 223 (350)
|. ..|.+ +. .. +|..-.+.|+| |.|. ++.|..++ .|+|
T Consensus 233 WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi---~~fH~i~~pa~l~a~~ 308 (391)
T PF09334_consen 233 WGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDI---IRFHAIYWPAMLLAAG 308 (391)
T ss_dssp SSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGG---HHHHHTHHHHHHHHCT
T ss_pred CcceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccch---hHHHHHHhHHHHhccc
Confidence 11 11211 10 00 12223445655 5766 55555444 5568
Q ss_pred CCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhcc
Q psy2381 224 VTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN 292 (350)
Q Consensus 224 ~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~ 292 (350)
++.|.-....-.+..+|+||||+.|. ++..++.++ +.++++|.||++.+-...+. -|+.+++++.++
T Consensus 309 ~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~-~F~~~~~~~~~n 376 (391)
T PF09334_consen 309 LPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGPEGQDS-DFSWEDFIERVN 376 (391)
T ss_dssp B---SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSSTTS-E-EE-HHHHHHHHH
T ss_pred CCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcCCCCCC-CCCHHHHHHHHH
Confidence 88886433333334589999999985 899999988 99999999999977433333 368888777665
No 65
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.37 E-value=3.8e-12 Score=125.35 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=62.7
Q ss_pred CCCeEEEecCCCccch---hhhhhhcc-cCCCcEEE--eCCCCCCCHHHHHHHHHHhCCCC--CceEee--ceeecCCCc
Q psy2381 172 LDDLVIVRADGIPTYN---FCAAIDDW-DMKITHVI--RGDDHINNTPRQINILKALGVTL--PFYGHL--PMVIDSNKV 241 (350)
Q Consensus 172 ~~D~Vl~R~dG~PtY~---~a~vVDD~-~~gIThvI--RG~D~l~~t~~q~~l~~aLg~~~--P~y~H~--pll~~~~g~ 241 (350)
..|.||+|+||.+||. +|.+.+-. ..+.+-+| -|.||...-.+-..++++||+.+ ....|+ .+++..+|+
T Consensus 207 ~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk 286 (354)
T PF00750_consen 207 DKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK 286 (354)
T ss_dssp SS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE
T ss_pred CCcceEEcCCCceEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC
Confidence 3578999999999994 77777665 56777775 68999766666677778999732 356777 556668897
Q ss_pred -eeccCCCC-CCHHHHHHc
Q psy2381 242 -KISKRKEA-TDIMYYKKK 258 (350)
Q Consensus 242 -KLSKR~g~-~~l~~l~~~ 258 (350)
|||||+|. +++++|+++
T Consensus 287 ~~mstR~G~~i~l~dllde 305 (354)
T PF00750_consen 287 VKMSTRKGNVITLDDLLDE 305 (354)
T ss_dssp ESS-TTTTSSTBHHHHHHH
T ss_pred ccccCCCCCceEHHHHHHH
Confidence 99999996 799999886
No 66
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.18 E-value=2.9e-09 Score=109.39 Aligned_cols=233 Identities=18% Similarity=0.180 Sum_probs=131.3
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcccc----------------------------
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINRS---------------------------- 50 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~r~---------------------------- 50 (350)
+++-=+-+|||.+||||++..+..+.++|. +..+||.=-||-|+-|.
T Consensus 20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~~ 99 (515)
T TIGR00467 20 YTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCKT 99 (515)
T ss_pred EEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCcH
Confidence 344456679999999999999988888875 34578887788875443
Q ss_pred --cHHHHHHHHHHHHHcCCCCCCCCeeecCCH--HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCC-----
Q psy2381 51 --TLSATQTIIDGMKWLGLNYDEGPFYQTKRI--NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPR----- 121 (350)
Q Consensus 51 --~~~~~~~i~~dL~wlGl~~de~~~~QS~r~--~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~----- 121 (350)
.+.+...+.++|+.||++++ .++||+.- ..|.+.+...+++ ++++.+.-..-.....+..
T Consensus 100 s~~~h~~~~~~~~l~~~gi~~e--~~s~te~Y~sG~~~~~i~~~L~~---------~~~I~~il~~~~~~~~~~~~~P~~ 168 (515)
T TIGR00467 100 SYAEHFLIPFLESLPVLGINPE--FIRASKQYTSGLYASQIKIALDH---------RKEISEILNEYRTSKLEENWYPIS 168 (515)
T ss_pred HHHHHHHHHHHHHHHHcCCeEE--EEEHHHhhhcCChHHHHHHHHHh---------HHHHHHHHHHhcCCccCCCceeee
Confidence 24566778888999999875 46666533 3456666655553 3444332211111111111
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee--eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCC
Q psy2381 122 -YNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMK 198 (350)
Q Consensus 122 -Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~--v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~g 198 (350)
++..|... .- .++ ....+..+.|.+. -.|+.....+. + -.-||.|----| ...|
T Consensus 169 pic~~cGrv-~~----------~~~--~~~~~~~v~Y~c~cG~~g~~~~~~g~-~-KL~WkvdW~~RW--------~~lg 225 (515)
T TIGR00467 169 VFCENCGRD-TT----------TVN--NYDNEYSIEYSCECGNQESVDIYTGA-I-KLPWRVDWPARW--------KIEK 225 (515)
T ss_pred eecCCcCcc-Cc----------eEE--EecCCceEEEEcCCCCEEEEeecCCC-c-ccCCCCCcHhhH--------hhhC
Confidence 22344332 10 111 1111112334321 11222211110 0 111222211111 1246
Q ss_pred CcEEEeCCCCCCCH---HHHHHHH-HHhCCCCCceEeecee-ecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 199 ITHVIRGDDHINNT---PRQINIL-KALGVTLPFYGHLPMV-IDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 199 IThvIRG~D~l~~t---~~q~~l~-~aLg~~~P~y~H~pll-~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
||.=--|+||..+. .....+. ++||.++|...-..++ ++.+|+|||||+|+ ++++++.+. +.|+++|.|++.
T Consensus 226 V~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pdalR~~~l~ 303 (515)
T TIGR00467 226 VTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPEITRFLFAR 303 (515)
T ss_pred cccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHHHHHHHHhc
Confidence 77656799998743 3333333 6998888842222222 45678999999997 799999988 899999998654
No 67
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.98 E-value=1.2e-08 Score=110.43 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC-----------------cc------------cccHHHHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD-----------------IN------------RSTLSATQT 57 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD-----------------~~------------r~~~~~~~~ 57 (350)
+|+|||.|||||+++.++...+||.+ .|.-++.+-.+| ++ .-..++.+.
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~ 125 (800)
T PRK13208 46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK 125 (800)
T ss_pred cCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999954 576666544433 22 134568899
Q ss_pred HHHHHHHcCCC--CCCCCee--ecCCHHHHHHHHHHHHHCCceec
Q psy2381 58 IIDGMKWLGLN--YDEGPFY--QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 58 i~~dL~wlGl~--~de~~~~--QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
|.++++.||+. |+. .++ ..++...-+....+|.++|++|.
T Consensus 126 ~~~~~~~lg~s~Dw~~-~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 126 FRELWRRLGLSVDWSL-EYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHhCeeeccCC-CcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 99999999974 544 333 33445666777889999999998
No 68
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.95 E-value=2.4e-09 Score=104.67 Aligned_cols=235 Identities=21% Similarity=0.211 Sum_probs=117.5
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc-----CCeEEEEecCCCcccc----------------------------
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF-----NGIFILRIEDTDINRS---------------------------- 50 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~-----~G~~iLRieDtD~~r~---------------------------- 50 (350)
+++--.-||||..||||+|-.+..++.+|.. ..++|.--||-|+=|.
T Consensus 25 ~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~ 104 (360)
T PF01921_consen 25 YVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCH 104 (360)
T ss_dssp EEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSS
T ss_pred EEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCC
Confidence 4444556999999999999999888888752 3479999999886432
Q ss_pred ---cHHHHHHHHHHHHHcCCCCCCCCeeecCCH--HHHHHHHHHHHHCCceeccCCCHHHHHH----HHHHHhhcCCCC-
Q psy2381 51 ---TLSATQTIIDGMKWLGLNYDEGPFYQTKRI--NRYFEIINYLLSNDYAYYCYSSVEEIES----FRKKQRSFGEKP- 120 (350)
Q Consensus 51 ---~~~~~~~i~~dL~wlGl~~de~~~~QS~r~--~~y~~~~~~L~~~G~aY~C~cs~~~l~~----~r~~~~~~~~~~- 120 (350)
.+.+...+.+.|+.||++++ .++|++.- ..|.+.+...+++ +++|.+ .+....+..=.|
T Consensus 105 ~SyaeH~~~~~~~~L~~~gie~e--~~s~te~Y~sG~y~~~i~~aL~~---------~~~I~~Il~~~~~~~~~~~y~Pf 173 (360)
T PF01921_consen 105 ESYAEHFNAPFEEFLDEFGIEYE--FISQTEMYRSGRYDEQIRTALEN---------RDEIREILNEYRGRERPETYSPF 173 (360)
T ss_dssp SCHHHHHHHHHHHHHHTTT---E--EEECCCCCCTTTTHHHHCHHHHT---------HHHHHHHHHHHHHHT--TT--SE
T ss_pred ccHHHHHHHHHHHHHHHcCCceE--EEeHHHhhhCCchHHHHHHHHHh---------HHHHHHHHHHhcCcCCCCCeeee
Confidence 36688889999999999885 46777643 4677777666654 344433 222211111000
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeee---eecCCCCCCCeEEEecCCCccchhhhhhhccc
Q psy2381 121 -RYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK---ITISNKELDDLVIVRADGIPTYNFCAAIDDWD 196 (350)
Q Consensus 121 -~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~---~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~ 196 (350)
.+...|... . ...++.+.. +.+.+.|.+.-.|. +.... .+|-..|-.-=+.-=+.
T Consensus 174 ~piC~~cGri-~---------tt~v~~~d~-~~~~v~Y~c~~cG~~g~~~i~~----------g~gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 174 LPICEKCGRI-D---------TTEVTEYDP-EGGTVTYRCEECGHEGEVDITG----------GNGKLQWKVDWPMRWAA 232 (360)
T ss_dssp EEEETTTEE------------EEEEEEE---SSSEEEEE--TTS---EEETTT----------T-EEE-HHHHHHHHHHH
T ss_pred eeeccccCCc-c---------cceeeEeec-CCCEEEEEecCCCCEEEEecCC----------CcccccCCCcChhhhhh
Confidence 122344331 0 001122221 13455555533332 22211 12333333222221223
Q ss_pred CCCcEEEeCCCCCC---CHHHHHHHH-HHhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 197 MKITHVIRGDDHIN---NTPRQINIL-KALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 197 ~gIThvIRG~D~l~---~t~~q~~l~-~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
.|||.=--|+||.+ |...-..|. +.||+++|...-.-++....|.||||++|+ +|+++.++- .+||.|+.+++.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTT-S-HHHHHHHHHC
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHh-cCHHHHHHHHcc
Confidence 68887778999998 888888888 889999999999999988888899999997 799999875 678888777763
No 69
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.93 E-value=6e-08 Score=105.93 Aligned_cols=90 Identities=23% Similarity=0.225 Sum_probs=69.1
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc------------------c--------------ccHH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN------------------R--------------STLS 53 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~------------------r--------------~~~~ 53 (350)
=+|.+||.||+||+++.++...+||.+ .|.-++.+-.+|.. + -+.+
T Consensus 40 ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~ 119 (861)
T TIGR00422 40 PPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEE 119 (861)
T ss_pred CCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHH
Confidence 379999999999999999999999964 57777777666631 1 1456
Q ss_pred HHHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 54 ATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 54 ~~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+.+.|.+.++.||+ +|+. +|+-. ++...-..+..+|.++|++|.
T Consensus 120 ~~~~~~~~~~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 120 SGGTIKNQIKRLGASLDWSR-ERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHhCeeeecCC-CcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 78899999999995 5654 34333 445666777889999999998
No 70
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.85 E-value=1.3e-07 Score=92.27 Aligned_cols=192 Identities=17% Similarity=0.232 Sum_probs=121.0
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc----cccHHHHHHHHHHHHHcCCCCCCC-CeeecCCH
Q psy2381 10 PSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN----RSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRI 80 (350)
Q Consensus 10 PsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~----r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~ 80 (350)
=.|||.+||||..+++.+|..- +.|...++=|-| |++. .......+.+..++-.+|++++.. .+.||+..
T Consensus 9 ~~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~ 87 (328)
T TIGR00233 9 IQPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP 87 (328)
T ss_pred eCCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH
Confidence 4688999999999999999877 556565555666 2222 234556666777888999999974 57899976
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
+ |.+.+ ....|.+|-.+++.+ ..|.+ . + ..
T Consensus 88 e-~~el~-------~~l~~~~t~~~l~r~----------~~~k~----k-~-----------------~~---------- 117 (328)
T TIGR00233 88 E-HYELA-------WLLSCQVTFGELKRM----------TQFKD----K-S-----------------QA---------- 117 (328)
T ss_pred H-HHHHH-------HHHHccCCHHHHHhc----------cCcch----h-c-----------------cC----------
Confidence 3 32222 224577777776321 11100 0 0 00
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCceEee--
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGHL-- 232 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~y~H~-- 232 (350)
.+. .-|..+|-.--+.|=...+.++|.-|.|-...--.-..+.+.+| +..|...|.
T Consensus 118 -------~~~---------~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~ 181 (328)
T TIGR00233 118 -------ENV---------PIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKF 181 (328)
T ss_pred -------CCC---------CchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccc
Confidence 000 11444554444455556788899999999655544455567777 677876553
Q ss_pred -ceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 233 -PMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 233 -pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~l 272 (350)
|.|.+.+|+||||++++.+| .|. =+|+.|..-+...
T Consensus 182 ~~~l~gl~~~KMSKS~~~s~I-~L~---D~~e~I~~KI~~a 218 (328)
T TIGR00233 182 FPRLMGLSGKKMSKSDPNSAI-FLT---DTPKQIKKKIRKA 218 (328)
T ss_pred cCCCCCCCCCcCCCCCCCCeE-eec---CCHHHHHHHHHhc
Confidence 66777778999999975333 122 2688888877663
No 71
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.80 E-value=4.8e-07 Score=99.03 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc------------------cc--------------cHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN------------------RS--------------TLSA 54 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~------------------r~--------------~~~~ 54 (350)
+|.+||.||+||+++.++...++|.+ .|.-++.+-.+|.. +. ..++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999964 57777766666631 00 4668
Q ss_pred HHHHHHHHHHcCC--CCCCCCeee--cCCHHHHHHHHHHHHHCCceec
Q psy2381 55 TQTIIDGMKWLGL--NYDEGPFYQ--TKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 55 ~~~i~~dL~wlGl--~~de~~~~Q--S~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.+.|.+.++.||+ +|+. +|+- .++...-..+..+|.++|++|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSR-ERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCC-CcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 8999999999995 6665 3433 3444666777889999999998
No 72
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=98.76 E-value=4.2e-07 Score=88.89 Aligned_cols=199 Identities=19% Similarity=0.190 Sum_probs=115.4
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHH-cCCeEEEEecC----CC--cccccHHHHHHHHHHHHHcCCCCCC-CCeeecCCHH
Q psy2381 10 PSPTGNLHIGGIRTALFSWAYARH-FNGIFILRIED----TD--INRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRIN 81 (350)
Q Consensus 10 PsPtG~lHiG~~rtal~n~l~Ar~-~~G~~iLRieD----tD--~~r~~~~~~~~i~~dL~wlGl~~de-~~~~QS~r~~ 81 (350)
-.|||.+||||..+++-+|..... ++.+.++=|-| |+ ......++......++-.+||+++. ..+.||+-.+
T Consensus 10 iqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 10 IKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred ECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 467899999999999999976654 45444443555 21 1122345555677788899999996 3678999544
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeee
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v 161 (350)
.+ +-.+...|.++-.+|+.+.....+. .. +.+ .+ ..|.+
T Consensus 90 ~~--------eL~~il~~~t~~g~L~R~~~~K~k~-----------~~-~~~-----~~--------------~~~~~-- 128 (332)
T PRK12556 90 IF--------ELAWILSCLTPKGLMNRAHAYKAKV-----------DQ-NKE-----AG--------------LDLDA-- 128 (332)
T ss_pred HH--------HHHHHHHccchHHHHHhccHHHHHH-----------hh-hhh-----hc--------------cccCC--
Confidence 22 2123456777777775432110000 00 000 00 00000
Q ss_pred eeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCceE---ee
Q psy2381 162 KGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYG---HL 232 (350)
Q Consensus 162 ~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~y~---H~ 232 (350)
.. .-|..+|-.--+.|-.+.+.++|.-|.|-...--.-..+.+.++ ++.|... |.
T Consensus 129 -------~~---------~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~ 192 (332)
T PRK12556 129 -------GV---------NMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEG 192 (332)
T ss_pred -------CC---------cchhhhchHHHhhhhhhccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCceecccccc
Confidence 00 11444454444445556678999999998644444444555565 4566544 78
Q ss_pred ceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 233 PMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 233 pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
+++..-+|+||||+.++ +.|. -+|+.|..-+..
T Consensus 193 ~~l~gLdg~KMSKS~~n~I~L~------D~p~~I~kKI~k 226 (332)
T PRK12556 193 AILPGLDGRKMSKSYGNVIPLF------AEQEKLRKLIFK 226 (332)
T ss_pred ccccCCCCCCCCCCCCCccccc------CCHHHHHHHHHH
Confidence 88878889999999974 2221 357776665544
No 73
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.75 E-value=9e-07 Score=87.66 Aligned_cols=188 Identities=19% Similarity=0.214 Sum_probs=115.6
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Cc---ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT----DI---NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINR 82 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt----D~---~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~ 82 (350)
.|||.|||||+. .+.++..-...|...++-|.|. +. ......+...+..++..+|++++.. .+.||+..+
T Consensus 74 ~PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~- 151 (368)
T PRK12285 74 MPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK- 151 (368)
T ss_pred CCCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH-
Confidence 566999999986 4666666666777777777774 21 1234455566778899999999864 588999876
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~ 162 (350)
|.+.+-.| .|.+|-.+++.+- .|.. +. +.
T Consensus 152 ~~~l~~~l-------~~~~t~~~l~r~~----------~f~~---~~-~~------------------------------ 180 (368)
T PRK12285 152 VYDLAFEL-------AKKVNFSELKAIY----------GFTG---ET-NI------------------------------ 180 (368)
T ss_pred HHHHHHHH-------HhhCcHHHHHHhh----------CCCC---CC-ch------------------------------
Confidence 44444433 4556666664210 1100 00 00
Q ss_pred eeeecCCCCCCCeEEEecCCCccchhhhhhh---cccCCCcEEEeCCCCCCCHHHHHHHHHHh----CCCCCceEeecee
Q psy2381 163 GKITISNKELDDLVIVRADGIPTYNFCAAID---DWDMKITHVIRGDDHINNTPRQINILKAL----GVTLPFYGHLPMV 235 (350)
Q Consensus 163 G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVD---D~~~gIThvIRG~D~l~~t~~q~~l~~aL----g~~~P~y~H~pll 235 (350)
|.+ .||.-+-|.+.- |.-..-++|..|.|-...--.-.-+.+.| |+..|.-.|.+++
T Consensus 181 g~~----------------~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~~~~l 244 (368)
T PRK12285 181 GHI----------------FYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFM 244 (368)
T ss_pred hhh----------------hhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHhhhcc
Confidence 000 122222222110 00135578889999865444445556677 9999988888888
Q ss_pred ecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 236 IDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 236 ~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~ 271 (350)
.+-+|+||||+....+| .|. =+|+.|..-+..
T Consensus 245 pgL~G~KMSkS~~~s~I-~L~---D~p~~I~kKI~k 276 (368)
T PRK12285 245 PGLTGGKMSSSKPESAI-YLT---DDPETVKKKIMK 276 (368)
T ss_pred cCCCCCcCCCCCCCCee-ecc---CCHHHHHHHHHh
Confidence 88899999999854333 111 268888888876
No 74
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.64 E-value=1.8e-06 Score=82.24 Aligned_cols=234 Identities=16% Similarity=0.107 Sum_probs=141.1
Q ss_pred CCCC-cCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-Cc-----------ccccHHHHHHHHHHHHHcCCC--CCC
Q psy2381 11 SPTG-NLHIGGIRTALFSWAYARHFNGIFILRIED----T-DI-----------NRSTLSATQTIIDGMKWLGLN--YDE 71 (350)
Q Consensus 11 sPtG-~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----t-D~-----------~r~~~~~~~~i~~dL~wlGl~--~de 71 (350)
.||| .|||||+.. +.++..-+..|...++=|-| | |+ .....+..+.+..++..+|++ ++.
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 5889 799999998 77777766656554443443 1 23 223455667788889999998 543
Q ss_pred -CCeeecCCHH--HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEe
Q psy2381 72 -GPFYQTKRIN--RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFK 148 (350)
Q Consensus 72 -~~~~QS~r~~--~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k 148 (350)
..+.||+-.. .|.+.+..| .|..+-.++..+..-.. |.+
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~~~k~-------------------------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKTSFQS-------------------------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhChHHHH-------------------------------Hhc
Confidence 2678998663 233333322 34455555532211000 000
Q ss_pred CCCCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhc----ccCCCcEEEeCCCCCCCHHHHHHHHHHhC-
Q psy2381 149 NPLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDD----WDMKITHVIRGDDHINNTPRQINILKALG- 223 (350)
Q Consensus 149 ~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD----~~~gIThvIRG~D~l~~t~~q~~l~~aLg- 223 (350)
. .+ +=|..+|..--+.|= ...++++|+-|.|-..+--.=+.+.+.++
T Consensus 128 ~----~~------------------------~~~~~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~ 179 (273)
T cd00395 128 E----GI------------------------SATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNG 179 (273)
T ss_pred C----CC------------------------CchhhhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCC
Confidence 0 00 112223322222221 12566999999999877777777778784
Q ss_pred CCCCceEeeceeecCCCceeccCCCCC-CHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCC
Q psy2381 224 VTLPFYGHLPMVIDSNKVKISKRKEAT-DIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPA 302 (350)
Q Consensus 224 ~~~P~y~H~pll~~~~g~KLSKR~g~~-~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~ 302 (350)
.+.|.-.+.|++.+.+|.||||+.++. ++..+. -+|+.+..++...- + -.+.++++.|.
T Consensus 180 ~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~---dsp~~i~~ki~~a~----d---~~v~~~~~~~t---------- 239 (273)
T cd00395 180 FTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTEK---TSPYEFYQFWINAV----D---SDVINILKYFT---------- 239 (273)
T ss_pred CCCCeEEeeccccCCCCCcCCCCCCCCccccccC---CCHHHHHHHHHccc----H---hHHHHHHHHHc----------
Confidence 678887888999999999999998753 333332 47999999987532 1 12345556665
Q ss_pred cccHHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy2381 303 QFNLKKLEWLNNFYIKSYDDKKLLNLIQP 331 (350)
Q Consensus 303 ~~d~~kL~~~n~~~i~~~~~~~~~~~~~~ 331 (350)
..+.+++..+-+++.+.....++.+.+..
T Consensus 240 ~~~~~ei~~i~~~~~~~~~~~~~K~~La~ 268 (273)
T cd00395 240 FLSKEEIERLEQEQYEAPGYRVAQKTLAE 268 (273)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 12567777776777666666666555543
No 75
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.9e-07 Score=86.16 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=127.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc----cccHHHHHHHHHHHHHcCCCCCCC-CeeecCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN----RSTLSATQTIIDGMKWLGLNYDEG-PFYQTKR 79 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~----r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r 79 (350)
.--|||.|||||...|+.+|...+......+.=|-| |.+. .....++..+..++-.+||+++.. .|.||+.
T Consensus 11 G~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v 90 (314)
T COG0180 11 GIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEV 90 (314)
T ss_pred cCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCc
Confidence 446999999999999999999998876565555666 2222 346777888888889999999984 6889996
Q ss_pred HHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEe
Q psy2381 80 INRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWND 159 (350)
Q Consensus 80 ~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D 159 (350)
.+ +.+-.+.+-|.-+--+++.+ +.|...-.. .+. .+
T Consensus 91 ~e--------~~eLa~~l~~~~~~gel~r~----------~~fKdk~~~----------~~~------~~---------- 126 (314)
T COG0180 91 PE--------HAELAWLLSCVTNFGELERM----------TQFKDKSAK----------KGE------SI---------- 126 (314)
T ss_pred hH--------HHHHHHHHHccCcHHHHHhh----------cCcchhhhc----------ccc------cc----------
Confidence 55 23333556787777787643 223111000 000 01
Q ss_pred eeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCceEee-
Q psy2381 160 LIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGHL- 232 (350)
Q Consensus 160 ~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~y~H~- 232 (350)
+-|..+|-.--+.|-.+-+-++|=-|.|-...--..+-|.+.++ ++.|.-.+.
T Consensus 127 --------------------~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~ 186 (314)
T COG0180 127 --------------------PIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISK 186 (314)
T ss_pred --------------------cccchhccHHHHHHhhhccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccC
Confidence 11333333222222222244677789999777777777778887 667754433
Q ss_pred -ceeecCCC-ceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 233 -PMVIDSNK-VKISKRKEATDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 233 -pll~~~~g-~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+.+.+-+| .||||+.++.+| .|. -+|+.+..-+...-
T Consensus 187 ~~~i~gL~g~~KMSkS~~ns~I-~L~---D~~~~i~kKI~~~~ 225 (314)
T COG0180 187 VARLPGLDGPGKMSKSDPNSAI-FLL---DDPKTIRKKIKKAA 225 (314)
T ss_pred CCcccCCCCCCcccccCCCCee-ecc---CCHHHHHHHHHHhc
Confidence 47777777 899999998443 333 36888888887643
No 76
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=98.59 E-value=1.6e-06 Score=84.82 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=112.6
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC---CC---cccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED---TD---INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD---tD---~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.+||||..+++.+|..-+..+..+++--|+ |+ +.....++...+..++..+|++++.- .+.||+-.+.+
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e~~ 89 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPELA 89 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchHHH
Confidence 4679999999999999997777666665553232 22 12334556666777888999999863 56799964422
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeee
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G 163 (350)
+. .+.+.|.++-.++..+...+.. +... . +..
T Consensus 90 -~l-------~~~l~~~~~~~~l~r~~~~k~~----------~~~~-~---------------~~~-------------- 121 (333)
T PRK12282 90 -EL-------TMYYMNLVTVARLERNPTVKTE----------IAQK-G---------------FGR-------------- 121 (333)
T ss_pred -HH-------HHHHHhhchHHHHhhchHHHHH----------Hhcc-C---------------CCC--------------
Confidence 11 2346777777766422111000 0000 0 000
Q ss_pred eeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC--CCCCceE-------eece
Q psy2381 164 KITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG--VTLPFYG-------HLPM 234 (350)
Q Consensus 164 ~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg--~~~P~y~-------H~pl 234 (350)
.. .-|..+|-.--+.|=...+.++|.-|.|-...--.-..+.+.++ +..|.+. |.|+
T Consensus 122 -----~~---------~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~ 187 (333)
T PRK12282 122 -----SI---------PAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGR 187 (333)
T ss_pred -----CC---------cchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCc
Confidence 00 01444444444445456788999999998544444444556666 3323322 4567
Q ss_pred eecCCC-ceeccCCCCCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 235 VIDSNK-VKISKRKEATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 235 l~~~~g-~KLSKR~g~~~l~~l~~~G~~peal~~~l~~ 271 (350)
|.+-+| .||||+.++ +| .|- -+|+.|..-+..
T Consensus 188 i~~L~g~~KMSKS~~~-~I-~L~---D~pe~I~kKI~~ 220 (333)
T PRK12282 188 LPGLDGKAKMSKSLGN-AI-YLS---DDADTIKKKVMS 220 (333)
T ss_pred ccCCCCCCcCCCCCCC-ee-eee---CCHHHHHHHHHh
Confidence 766666 799999975 22 121 257776666655
No 77
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.58 E-value=2.6e-06 Score=81.02 Aligned_cols=239 Identities=13% Similarity=0.047 Sum_probs=149.7
Q ss_pred CCCC-cCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-Ccc-----------cccHHHHHHHHHHHHHcCCC--CCC
Q psy2381 11 SPTG-NLHIGGIRTALFSWAYARHFNGIFILRIED----T-DIN-----------RSTLSATQTIIDGMKWLGLN--YDE 71 (350)
Q Consensus 11 sPtG-~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----t-D~~-----------r~~~~~~~~i~~dL~wlGl~--~de 71 (350)
.||| .|||||+..+. ++..-...|...++=|-| | |+. .........+..++..+|++ ++.
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 5889 99999999765 455545556565665566 2 331 22455667788899999996 543
Q ss_pred -CCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2381 72 -GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (350)
Q Consensus 72 -~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~ 150 (350)
..+.||+-.+. .+...+++ +.|.|+-.++........+. ..+ .+
T Consensus 87 ~~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~~~~k~r~--------------~~~-----~~---------- 131 (269)
T cd00805 87 AKFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRRDAVKVRL--------------EEE-----EG---------- 131 (269)
T ss_pred eEEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHHHHHHHHH--------------hcC-----CC----------
Confidence 36789975543 11122221 46778888775432111000 000 00
Q ss_pred CCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceE
Q psy2381 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230 (350)
Q Consensus 151 ~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~ 230 (350)
+ +=|..+|-.--+.|=...+.++|+.|.|-..+.-..+.+.+.+++..|.-.
T Consensus 132 ----~------------------------~~~~~~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l 183 (269)
T cd00805 132 ----I------------------------SFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGL 183 (269)
T ss_pred ----C------------------------cHHHHHHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 0 012233333333344445668999999998888888888899999888888
Q ss_pred eeceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHH
Q psy2381 231 HLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (350)
Q Consensus 231 H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~ 310 (350)
|.|++.+.+|+||||+.++..-..+. -+|+.|..++...= + . .+.++++.|. . ++.+++.
T Consensus 184 ~~~ll~~l~G~KMSKS~~~~~~i~l~---dsp~~i~~Ki~~a~-~---~---~v~~~l~~~~-~---------~~~~~~e 243 (269)
T cd00805 184 TTPLLTGLDGGKMSKSEGNAIWDPVL---DSPYDVYQKIRNAF-D---P---DVLEFLKLFT-F---------LDYEEIE 243 (269)
T ss_pred eeccccCCCCCcccCCCCCcccccCC---CCHHHHHHHHHcCC-c---H---HHHHHHHHHH-c---------CCHHHHH
Confidence 99999999999999998764212222 47999999987622 1 1 3467777776 2 2366677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q psy2381 311 WLNNFYIKSYDDKKLLNLIQPII 333 (350)
Q Consensus 311 ~~n~~~i~~~~~~~~~~~~~~~~ 333 (350)
.+-++|-...-+.++.+.+...+
T Consensus 244 el~~~~~~~~~~~~~K~~la~~i 266 (269)
T cd00805 244 ELEEEHAEGPLPRDAKKALAEEL 266 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 77777765433677777665543
No 78
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=98.49 E-value=8.6e-06 Score=79.68 Aligned_cols=249 Identities=15% Similarity=0.112 Sum_probs=145.9
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Cc---ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT----DI---NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRI 80 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt----D~---~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~ 80 (350)
.=.|||.|||||+- ++.+|......|...++=|-|. ++ ..........+..++..+|++++.- .+.||+-.
T Consensus 36 G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~ 114 (329)
T PRK08560 36 GFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQ 114 (329)
T ss_pred ccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhh
Confidence 44688999999976 6666777766677766666662 22 2345666777888999999998864 57888854
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
... ++...++ -..|.++-.++...... + + . ..
T Consensus 115 ~~~-~~~~~~~----~l~~~~~~~~l~r~~~~---------~-~----~-~~---------------------------- 146 (329)
T PRK08560 115 LDK-EYWLLVL----KLAKNTTLARARRSMTI---------M-G----R-RM---------------------------- 146 (329)
T ss_pred ccc-hHHHHHH----HHHhhccHHHHHHhhhh---------h-c----c-cC----------------------------
Confidence 321 1111111 12466666666432100 0 0 0 00
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g 240 (350)
.+. +-|..+|-.--+.|=...+.++|+-|.|-..+--.=..+.+.++...|.-.+.|+|.+-+|
T Consensus 147 ------------~~~----~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g 210 (329)
T PRK08560 147 ------------EEP----DVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDG 210 (329)
T ss_pred ------------CCC----CHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCC
Confidence 000 1244555555556666678899999999865554445666788888898888999999888
Q ss_pred c--eeccCC-C-CCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccccC--------CCCCCCCcccHH
Q psy2381 241 V--KISKRK-E-ATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCK--------YLSKSPAQFNLK 307 (350)
Q Consensus 241 ~--KLSKR~-g-~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~~~--------~i~~~~~~~d~~ 307 (350)
. ||||+. + ++.|. -+|+.|+.=+... ++++ ..+.-.+=++.+.|. .. +-..+......+
T Consensus 211 ~~~KMSKS~p~~~I~L~------D~~~~I~~KI~kA-~t~~~~~~~n~v~~~~~~~~-~~~~~~~~~~r~~~~g~~~~~~ 282 (329)
T PRK08560 211 GGIKMSKSKPGSAIFVH------DSPEEIRRKIKKA-YCPPGEVEGNPVLEIAKYHI-FPRYDPFVIERPEKYGGDLEYE 282 (329)
T ss_pred CCCCCcCCCCCCeeccc------CCHHHHHHHHHhc-cCCCCCcCCCcHHHHHHHHh-hccccceEEechhhcCCCCCcC
Confidence 7 999998 4 23443 3688888777662 2222 112222334444443 21 111122233334
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHH
Q psy2381 308 KLEWLNNFYIKS-YDDKKLLNLIQ 330 (350)
Q Consensus 308 kL~~~n~~~i~~-~~~~~~~~~~~ 330 (350)
.+..+-++|-.. +.+.++++.+.
T Consensus 283 ~~eel~~~y~~g~l~~~~lK~~la 306 (329)
T PRK08560 283 SYEELERDYAEGKLHPMDLKNAVA 306 (329)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455566666553 35555555444
No 79
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.48 E-value=6.9e-06 Score=82.41 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=117.3
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc-CCeEEEEecC----C---CcccccHHHHHHHHHHHHHcCCCCCCC-CeeecC
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF-NGIFILRIED----T---DINRSTLSATQTIIDGMKWLGLNYDEG-PFYQTK 78 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~-~G~~iLRieD----t---D~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~ 78 (350)
-.-.|||.+||||..+++-||+..... +...++=|-| | |++ ........+..++-.+||+++.. .+.||+
T Consensus 7 SGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~-~lr~~~~e~aa~~LA~GlDPek~~if~QSd 85 (431)
T PRK12284 7 TGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPA-RIQRSTLEIAATWLAAGLDPERVTFYRQSD 85 (431)
T ss_pred EEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHH-HHHHHHHHHHHHHHHhCCCccceEEEECCc
Confidence 345699999999999999999988653 4444443455 2 332 33445556777888899999973 678999
Q ss_pred CHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEE
Q psy2381 79 RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWN 158 (350)
Q Consensus 79 r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~ 158 (350)
-. +.-+-.+...|.++.-+|+.+..-..+.. . +. . .|. .+
T Consensus 86 vp--------eh~EL~wiL~~it~~g~L~Rm~q~K~k~~-------~--~~-~-------~g~-------~~-------- 125 (431)
T PRK12284 86 IP--------EIPELTWLLTCVAGKGLLNRAHAYKAAVD-------K--NV-A-------AGE-------DP-------- 125 (431)
T ss_pred ch--------hHHHHHHHHHhhhhHHHHHhhhHHHHHHH-------h--hh-c-------ccc-------Cc--------
Confidence 33 23333355678887777765421110000 0 00 0 000 00
Q ss_pred eeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC-------CCCCc--e
Q psy2381 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG-------VTLPF--Y 229 (350)
Q Consensus 159 D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg-------~~~P~--y 229 (350)
.+-+ +-|..+|-.--+.|-.+.+.++|--|.|-..+...=.-|.+.++ ++.|. .
T Consensus 126 --------------~~~i---~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i 188 (431)
T PRK12284 126 --------------DAGV---TAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVI 188 (431)
T ss_pred --------------ccCc---chHHhhchHHHHhhhhhcCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCcccc
Confidence 0000 12555665555566666788999999998543333333444443 22342 2
Q ss_pred -EeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 230 -GHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 230 -~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
.|.+.|.+-+|+||||+.++ +.|. -+|+.|+.-+..
T Consensus 189 ~~~~~~I~gLdg~KMSKS~~n~I~L~------Ds~~~I~kKI~~ 226 (431)
T PRK12284 189 EESVATLPGLDGRKMSKSYDNTIPLF------APREELKKAIFS 226 (431)
T ss_pred ccccccccCCCCccccCCCCCEeeec------CCHHHHHHHHhc
Confidence 35678888889999999874 2232 256666666654
No 80
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.43 E-value=9.7e-06 Score=80.67 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCc---ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDI---NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINR 82 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~---~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~ 82 (350)
.|||.+||||...++-+|.-- +.++..++=|-| |++ ..........+..++..+||+++.- .+.||+-.
T Consensus 10 qPSG~~HLGnylG~ik~wv~l-q~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~-- 86 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVKL-QHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVP-- 86 (398)
T ss_pred CCCCcchHHHHHHHHHHHHHH-hcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCch--
Confidence 588999999999999888843 446665555666 332 2345566677888899999999863 67899952
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHH
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESF 109 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~ 109 (350)
+.-+..+.|.|.++-.+++.+
T Consensus 87 ------eh~eL~wil~~~t~~~~L~R~ 107 (398)
T PRK12283 87 ------EHAELHLLLSMITPLGWLERV 107 (398)
T ss_pred ------HHHHHHHHHHhhccHHHHHhh
Confidence 223334677888887776543
No 81
>KOG0436|consensus
Probab=98.41 E-value=2e-06 Score=84.83 Aligned_cols=87 Identities=21% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc------------cccHHHHHHHHHHH----HHcCCCCCCC
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN------------RSTLSATQTIIDGM----KWLGLNYDEG 72 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~------------r~~~~~~~~i~~dL----~wlGl~~de~ 72 (350)
.|+-.+||||++++|++..+||.+ .|+-+.=.+.||.- ++.++..+.|-..+ +-+||.++..
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F 128 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF 128 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence 478899999999999999999964 58877777888731 44455555555444 4579999973
Q ss_pred Ceee--cCCHHHHHHHHHHHHHCCceec
Q psy2381 73 PFYQ--TKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 73 ~~~Q--S~r~~~y~~~~~~L~~~G~aY~ 98 (350)
++. .++....+++-..+.++|..|.
T Consensus 129 -IRTTdpkH~a~Vqefw~~~~knG~iy~ 155 (578)
T KOG0436|consen 129 -IRTTDPKHEAIVQEFWARVFKNGDIYR 155 (578)
T ss_pred -eecCCchHHHHHHHHHHHHHhCCceee
Confidence 333 3567888889999999999997
No 82
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=98.35 E-value=3e-05 Score=78.06 Aligned_cols=114 Identities=11% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2381 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSH 276 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~ 276 (350)
+++.++-|.|-..|.-.=+.|.+.++...|.-.+.|+|.+.+|+||||+.++ +.|. +.-.+|+.+..++...
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~---d~~tsp~~i~qki~~~---- 258 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLD---PEKTSPYEFYQFWMNI---- 258 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceecc---CCCCCHHHHHHHHHcC----
Confidence 8888999999988888888888999988776678999999999999999874 4444 3446799999998743
Q ss_pred CCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy2381 277 GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQP 331 (350)
Q Consensus 277 ~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~~~~~~ 331 (350)
++. .+..+++.|. .++.+++..+-++|-....+.++.+.+..
T Consensus 259 ~D~---~v~~~l~~~t----------~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~ 300 (410)
T PRK13354 259 DDR---DVVKYLKLFT----------DLSPDEIDELEAQLETEPNPRDAKKVLAE 300 (410)
T ss_pred ChH---HHHHHHHHHh----------CCCHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 121 2355666665 12566777776777664335555554443
No 83
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2e-05 Score=79.87 Aligned_cols=233 Identities=18% Similarity=0.145 Sum_probs=124.4
Q ss_pred eeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCccccc------------------------------
Q psy2381 7 RFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDINRST------------------------------ 51 (350)
Q Consensus 7 RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~r~~------------------------------ 51 (350)
=-.-||+|..||||+|-.+..++.+|. +..++|-=-||-|+-|.+
T Consensus 24 ~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G~~~S 103 (521)
T COG1384 24 ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFGCCDS 103 (521)
T ss_pred ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCccccch
Confidence 334699999999999987777777764 345788888999876532
Q ss_pred --HHHHHHHHHHHHHcCCCCCCCCeeecCCH--HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCC---CCC
Q psy2381 52 --LSATQTIIDGMKWLGLNYDEGPFYQTKRI--NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPR---YNR 124 (350)
Q Consensus 52 --~~~~~~i~~dL~wlGl~~de~~~~QS~r~--~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~---Y~g 124 (350)
+.+...+.+.|+.+|+... .++||+.- ..|.+.+...+++ +++|.+.-..-........ |.-
T Consensus 104 ya~hf~~~f~~~l~~~Gi~~E--~~s~se~Yk~G~~~~~i~~ale~---------rdeI~~il~~~~~~~~~e~~~P~~p 172 (521)
T COG1384 104 YAEHFLRPFEEFLDEFGIEVE--FVSATELYKSGLYDEAIRIALER---------RDEIMEILNEYRGRELEEDWSPFMP 172 (521)
T ss_pred HHHHHHHHHHHHHHhcCCceE--EEEhHHhhhcccHHHHHHHHHhh---------HHHHHHHHHHhcCCcccCCceeccc
Confidence 3455667777888887765 46666532 4455555555543 3444332211111100111 111
Q ss_pred CCCCCCCCCCCCCCCCCCceEEE-eCCCCCceeEEee--eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcE
Q psy2381 125 IWRPEPGKILPSIPINRKPVIRF-KNPLYGNITWNDL--IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITH 201 (350)
Q Consensus 125 ~cr~l~~~ee~~~~~~~~~~~R~-k~~~~~~~~~~D~--v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gITh 201 (350)
.|- .+|+--+.+. +.+..+.+.+.+. -.|.+... ...|--+|-.--+.-=...|||.
T Consensus 173 iC~----------kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir----------~g~~KL~WRvdWp~RW~~lgVd~ 232 (521)
T COG1384 173 ICE----------KCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR----------GGEGKLPWRVDWPMRWAALGVDF 232 (521)
T ss_pred ccc----------ccCCcceeEEEEecCCceEEEEecCCccceeecc----------ccCcccccCcCccchhhccCccc
Confidence 121 1222111111 1111133444332 12222221 12222222111111001235554
Q ss_pred EEeCCCCCCCHHH---HHHHH-HHhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 202 VIRGDDHINNTPR---QINIL-KALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 202 vIRG~D~l~~t~~---q~~l~-~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
=-=|+||..+--. =..|. +-+|+++|.-.-.-++...+|.||||++|. +++++..+- .+||.|+.++.+
T Consensus 233 EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev-~~pE~lry~~~r 306 (521)
T COG1384 233 EPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSDWLEV-APPEVLRYLIAR 306 (521)
T ss_pred ccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcEEcHHHHHHh-cCHhHeeeeeee
Confidence 4568999863322 22233 478999986555555555568999999997 799999975 678887776654
No 84
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=98.30 E-value=1.4e-05 Score=80.44 Aligned_cols=116 Identities=12% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCC-CCCHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy2381 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKE-ATDIMYYKKKGFLPEAILNYLARLGWSH 276 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g-~~~l~~l~~~G~~peal~~~l~~lG~~~ 276 (350)
+.+.++-|.|-..|--.=+.+.+.++..++.-.+.|+|.+.+|+||||+.+ ++.|. +.-.+|+.+..++....
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~---d~~tsp~~i~qki~~~~--- 261 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLD---EEKTSPYEMYQKWMNIS--- 261 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCC---CCCCCHHHHHHHHhcCC---
Confidence 788999999998777666677788886555446889999999999999986 35554 34468999999998642
Q ss_pred CCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy2381 277 GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPII 333 (350)
Q Consensus 277 ~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~~~~~~~~ 333 (350)
+. .+..+++.|. .++.+++..+=.+|.....+.++.+.+...+
T Consensus 262 -D~---~v~~~l~~~t----------~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~v 304 (408)
T PRK05912 262 -DA---DVWRYLKLLT----------FLSLEEIEELEEELAEGPNPREAKKVLAEEI 304 (408)
T ss_pred -hH---HHHHHHHHHh----------cCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 12 2456666665 2366667777777766556666666655443
No 85
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=98.14 E-value=0.00027 Score=70.56 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=54.4
Q ss_pred CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCC-CCCceEeeceeecC-CC-ceeccCCCCCCHHHHHHcC
Q psy2381 183 IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV-TLPFYGHLPMVIDS-NK-VKISKRKEATDIMYYKKKG 259 (350)
Q Consensus 183 ~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~-~~P~y~H~pll~~~-~g-~KLSKR~g~~~l~~l~~~G 259 (350)
..+|-.--+.|-...+.++|.-|.|-...--.-..+.+.+|. +.|...|.|+|.+- +| +||||+.++..|. |-
T Consensus 195 ~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~-L~--- 270 (383)
T PTZ00126 195 QILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIF-ME--- 270 (383)
T ss_pred hhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeec-CC---
Confidence 334444444444556788999999873222222455577885 46777788999887 45 7999998653221 11
Q ss_pred CCHHHHHHHHHH
Q psy2381 260 FLPEAILNYLAR 271 (350)
Q Consensus 260 ~~peal~~~l~~ 271 (350)
-+|+.|..-+..
T Consensus 271 Dspe~I~kKI~k 282 (383)
T PTZ00126 271 DSEEDVNRKIKK 282 (383)
T ss_pred CCHHHHHHHHHh
Confidence 268888887776
No 86
>PLN02486 aminoacyl-tRNA ligase
Probab=98.05 E-value=0.00074 Score=67.39 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=48.1
Q ss_pred CCCC-cCchhhHHHHHHHHHHHHHcCCeEEEEecCC----Cc---ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCH
Q psy2381 11 SPTG-NLHIGGIRTALFSWAYARHFNGIFILRIEDT----DI---NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRI 80 (350)
Q Consensus 11 sPtG-~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt----D~---~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~ 80 (350)
.||| .|||||+..+...-.+-+..|...++-|.|- .. .....++......++..+|++++.. ++.+++..
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHH
Confidence 6898 5999999999876655556567777768771 11 1223445567788888899999763 45566655
No 87
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.05 E-value=7.5e-06 Score=88.94 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=69.0
Q ss_pred eeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc----------------ccccHHHHHHHHHHHHHcCC-
Q psy2381 7 RFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDI----------------NRSTLSATQTIIDGMKWLGL- 67 (350)
Q Consensus 7 RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~----------------~r~~~~~~~~i~~dL~wlGl- 67 (350)
=-.|.|||.|||||+++.++.+.+||.+ .|.-++.+-.+|. ..-..++.+.+.+.|+.||+
T Consensus 38 ~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~ 117 (805)
T PRK00390 38 DMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFS 117 (805)
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 3369999999999999999999999964 4666665555442 22357789999999999999
Q ss_pred -CCCCCCee--ecCCHHHHHHHHHHHHHCCceec
Q psy2381 68 -NYDEGPFY--QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 68 -~~de~~~~--QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+|+. .|. ..++...-+.+..+|.++|++|.
T Consensus 118 ~Dw~~-~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 118 YDWSR-EIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred ccCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 5544 333 22555666778889999999998
No 88
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.04 E-value=8.1e-06 Score=89.03 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=67.0
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc----------------ccccHHHHHHHHHHHHHcC
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDI----------------NRSTLSATQTIIDGMKWLG 66 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~----------------~r~~~~~~~~i~~dL~wlG 66 (350)
++=-.|+|||.|||||++++++.+.+||.+ .|.-++.+-.+|. .....++.+.+.+.|+.||
T Consensus 33 v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG 112 (842)
T TIGR00396 33 ILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALG 112 (842)
T ss_pred EEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 444589999999999999999999999964 4666665555552 2235678899999999999
Q ss_pred CC--CCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 67 LN--YDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 67 l~--~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+. ||. .+..+ ++...-+....+|.++|++|.
T Consensus 113 ~~~Dw~~-~~~T~d~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 113 FSYDWDR-EIATCDPEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CcccCCC-CcccCCHHHHHHHHHHHHHHHHCCCeEe
Confidence 75 554 33322 222333444569999999997
No 89
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.00 E-value=5.2e-05 Score=74.33 Aligned_cols=190 Identities=20% Similarity=0.242 Sum_probs=108.2
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCc--ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDI--NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~--~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.|||||...++-+|..-+.. ...++=|-| |+. .....+....+..++-.+|++++.- .+.||+-.+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 578999999999888888655443 333333454 222 2334455666777888899999863 578998544 3
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeee
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G 163 (350)
.+..-. ..|..+-.+++.... | ... . + +...
T Consensus 87 ~el~~~-------l~~~~~~~~l~r~~~----------~----k~~-~--------~-----~~~~-------------- 117 (333)
T PRK00927 87 AELAWI-------LNCITPLGELERMTQ----------F----KDK-S--------A-----KQKE-------------- 117 (333)
T ss_pred HHHHHH-------HHhhhhHHHHHhhhh----------H----HHH-H--------h-----ccCC--------------
Confidence 222222 245555555533210 1 000 0 0 0000
Q ss_pred eeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCC------CCCceEe---ece
Q psy2381 164 KITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV------TLPFYGH---LPM 234 (350)
Q Consensus 164 ~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~------~~P~y~H---~pl 234 (350)
+. +-|..+|-.--+.|-...+.++|.-|.|-..+--.-..+.+.++. +.|...| .|+
T Consensus 118 -----~~---------~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~ 183 (333)
T PRK00927 118 -----NV---------SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGAR 183 (333)
T ss_pred -----CC---------CcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhcccccc
Confidence 00 113444444444444556889999999986544444555566652 4565444 277
Q ss_pred eecCCCc--eeccCCCC----CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 235 VIDSNKV--KISKRKEA----TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 235 l~~~~g~--KLSKR~g~----~~l~~l~~~G~~peal~~~l~~ 271 (350)
|.+-+|. ||||+.+. +.+. -+|+.|..-+..
T Consensus 184 l~gL~g~~~KMSKS~~~~~~~I~l~------D~~~~I~~KI~~ 220 (333)
T PRK00927 184 VMGLDGPTKKMSKSDPNDNNTINLL------DDPKTIAKKIKK 220 (333)
T ss_pred ccCCCCCCCCCCCCCCCCCCeEEee------CCHHHHHHHHHh
Confidence 7777776 99999873 3332 257777666655
No 90
>PLN02886 aminoacyl-tRNA ligase
Probab=97.91 E-value=2.8e-05 Score=77.39 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=59.3
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CC--cccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TD--INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD--~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.+||||...++-+|..-+. +...++=|-| |. ......+....+..++-.+||+++.- .+.||+-.+ +
T Consensus 54 qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e-~ 131 (389)
T PLN02886 54 QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQSHVPA-H 131 (389)
T ss_pred CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEeCCCch-h
Confidence 57799999999999999977665 4444444555 22 12334456666778888999999863 578998433 2
Q ss_pred HHHHHHHHHCCceeccCCCHHHHH
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIE 107 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~ 107 (350)
.+. .+.+.|.++-.+|+
T Consensus 132 ~eL-------~wil~~~t~~g~L~ 148 (389)
T PLN02886 132 AEL-------MWLLSCSTPIGWLN 148 (389)
T ss_pred HHH-------HHHHHhhCcHHHHH
Confidence 222 24467777777775
No 91
>PLN02563 aminoacyl-tRNA ligase
Probab=97.87 E-value=2.3e-05 Score=86.39 Aligned_cols=92 Identities=24% Similarity=0.239 Sum_probs=69.1
Q ss_pred EeeCCCCCCc-CchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------cccccHHHHHHHHHHHHHcC
Q psy2381 6 TRFAPSPTGN-LHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------INRSTLSATQTIIDGMKWLG 66 (350)
Q Consensus 6 ~RFAPsPtG~-lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wlG 66 (350)
+=-.|.|||. |||||++++++.+.+||.+ .|.-++.+--+| +.....++.+.+.+.|+.||
T Consensus 115 ~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG 194 (963)
T PLN02563 115 LDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLG 194 (963)
T ss_pred EeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhC
Confidence 3346999997 9999999999999999964 576666655555 22345778899999999999
Q ss_pred C--CCCCCCeee--cCCHHHHHHHHHHHHHCCceec
Q psy2381 67 L--NYDEGPFYQ--TKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 67 l--~~de~~~~Q--S~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+ +||. .++- .++...-+....+|.++|++|.
T Consensus 195 ~s~DW~r-~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 195 FSYDWDR-EISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred cEeeCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 5 6665 3332 2444555677889999999998
No 92
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.78 E-value=7.9e-05 Score=71.51 Aligned_cols=194 Identities=20% Similarity=0.220 Sum_probs=119.7
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCC-----Ccc----cccHHHHHHHHHH--HHHcCCCCCCC-CeeecC
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDT-----DIN----RSTLSATQTIIDG--MKWLGLNYDEG-PFYQTK 78 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-----D~~----r~~~~~~~~i~~d--L~wlGl~~de~-~~~QS~ 78 (350)
.|||.|||||+.... ++......|...++=|-|. |+. |......+.+.++ +-.+|++++.- .+.||+
T Consensus 13 ~PTg~lHlG~l~~~~-~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIM-KLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHHH-HHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHHH-HHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 588999999776654 4665566888877777662 333 4455566666666 77899998763 678998
Q ss_pred CHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEE
Q psy2381 79 RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWN 158 (350)
Q Consensus 79 r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~ 158 (350)
-.... ++...|..- ++.-++..+..... ....+ ..++ + +
T Consensus 92 ~~~~~-~~~~~l~~~-------~~~~~l~~~~~~~~----------~~~~~-~~~~-----~--------------~--- 130 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDV-------ARLFSLNRMLRFKD----------VKKRL-KNGE-----G--------------I--- 130 (292)
T ss_dssp HHCHH-HHHHHHHHH-------HBHHHHHHHHHHHH----------HHHHH-SSTT-----T--------------S---
T ss_pred ccccc-chhhhhccc-------ccccchhhhhhhcc----------ccccc-cccc-----C--------------c---
Confidence 65444 444444432 23334433321100 00000 0000 0 0
Q ss_pred eeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCC----CCceEeece
Q psy2381 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT----LPFYGHLPM 234 (350)
Q Consensus 159 D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~----~P~y~H~pl 234 (350)
+-|..+|-.--+.|=...+.++++.|.|-..+--.=..+.+.+|.. .|...+.|+
T Consensus 131 ---------------------~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~ 189 (292)
T PF00579_consen 131 ---------------------SLGEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPL 189 (292)
T ss_dssp ---------------------BHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETC
T ss_pred ---------------------ceeeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecc
Confidence 0122344444455555677779999999977776667777888887 899999999
Q ss_pred eecCCCc-eeccCCCCCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 235 VIDSNKV-KISKRKEATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 235 l~~~~g~-KLSKR~g~~~l~~l~~~G~~peal~~~l~~ 271 (350)
+-+.+|. ||||++++.+| +|. =+|+.++..+..
T Consensus 190 l~~l~G~~KMSKS~~ns~I-~L~---d~~~~i~~Ki~~ 223 (292)
T PF00579_consen 190 LPGLDGQKKMSKSDPNSAI-FLD---DSPEEIRKKIKK 223 (292)
T ss_dssp BBSTTSSSBTTTTTTGGS--BTT---TTHHHHHHHHHH
T ss_pred ccccCCccccCccCCccEE-EEe---ccchhHHHHHHH
Confidence 9999999 99999987443 222 358888888776
No 93
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.76 E-value=4.9e-05 Score=84.48 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=71.8
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc---------c------------------------
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN---------R------------------------ 49 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~---------r------------------------ 49 (350)
++==+|.|||.||+||+++.++...++|.+ .|.-++.+-.+|.. +
T Consensus 64 i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~ 143 (995)
T PTZ00419 64 IVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWE 143 (995)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHH
Confidence 344479999999999999999999999964 57777776666632 0
Q ss_pred ccHHHHHHHHHHHHHcC--CCCCCCCee--ecCCHHHHHHHHHHHHHCCceec
Q psy2381 50 STLSATQTIIDGMKWLG--LNYDEGPFY--QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 50 ~~~~~~~~i~~dL~wlG--l~~de~~~~--QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
-...+.+.|.+.|+.|| ++|+. .|+ ..++....+.+..+|.++|++|+
T Consensus 144 w~~~~~~~~~~~~~~lG~~~DW~~-~~~T~d~~~~~~v~~~F~~l~~~Gliyr 195 (995)
T PTZ00419 144 WKDKHGNNICNQLRRLGSSLDWSR-EVFTMDEQRSKAVKEAFVRLYEDGLIYR 195 (995)
T ss_pred HHHHHHHHHHHHHHHhCceeeCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 03677888999999999 56666 333 33555777888899999999998
No 94
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.70 E-value=7.7e-05 Score=81.80 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=67.5
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc---------------------------------c
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN---------------------------------R 49 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~---------------------------------r 49 (350)
++=-+|+|||.||+||+++.++...++|.+ .|.-++.+-..|.. .
T Consensus 40 i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~ 119 (861)
T TIGR00392 40 FHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCRE 119 (861)
T ss_pred EecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHH
Confidence 344579999999999999999999999964 56666544443310 1
Q ss_pred ccHHHHHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 50 STLSATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 50 ~~~~~~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
-+..+.+.+.+.|+.||+ +|+. +|.-. ++...-+....+|.++|++|.
T Consensus 120 ~~~~~~~~~~~~~~~lG~~~dw~~-~y~T~~p~y~~~~~~~f~~l~~~gliyr 171 (861)
T TIGR00392 120 FALKQIEEQREQFQRLGVWGDWEN-PYKTMDPSYEESQWWLFKEAHEKGLLYR 171 (861)
T ss_pred HHHHHHHHHHHHHHHhCceecCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEee
Confidence 234578889999999998 8887 44433 333444555778999999998
No 95
>PLN02943 aminoacyl-tRNA ligase
Probab=97.65 E-value=0.00011 Score=81.24 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=69.4
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc-----------------------cc---------c
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN-----------------------RS---------T 51 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~-----------------------r~---------~ 51 (350)
+=.+|.|||.||+||+++.++...+||.+ .|.-++.+-.+|.. |+ +
T Consensus 93 ~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~ 172 (958)
T PLN02943 93 PMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWK 172 (958)
T ss_pred ecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHH
Confidence 33479999999999999999999999964 57777766666531 10 1
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 52 LSATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 52 ~~~~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.++.+.|.+.++.||+ +|+. +|+-. ++...-+....+|.++|++|.
T Consensus 173 ~~~~~~~~~~~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~l~~~Gliyr 222 (958)
T PLN02943 173 EKYGGTITNQIKRLGASCDWSR-ERFTLDEQLSRAVVEAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHHHHHHhCcceecCC-CcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4677899999999997 7765 44433 334555667788999999998
No 96
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.62 E-value=9.2e-05 Score=81.58 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=67.9
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------------ccc-------ccHHH
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------------INR-------STLSA 54 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------------~~r-------~~~~~ 54 (350)
+==+|.+||.|||||+++.++...++|.+ .|.-++-+--.| ++. -..++
T Consensus 54 ~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~ 133 (912)
T PRK05743 54 HDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQ 133 (912)
T ss_pred eCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHH
Confidence 33479999999999999999999999864 466555443333 221 24556
Q ss_pred HHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 55 TQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 55 ~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.+.+.++++.||+ +|+. +|+-. ++...-.....+|.++|++|.
T Consensus 134 ~~~~~~~~~~lG~~~dw~~-~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 134 VDIQREDFKRLGVLGDWDN-PYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHhCCcccCCC-CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7889999999999 8987 44332 344555667789999999998
No 97
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.62 E-value=8.5e-05 Score=82.29 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=67.2
Q ss_pred eeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC-----------------------cccc-------cHHH
Q psy2381 7 RFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD-----------------------INRS-------TLSA 54 (350)
Q Consensus 7 RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD-----------------------~~r~-------~~~~ 54 (350)
==+|++||.|||||+++.++...++|.+ .|.-++.+--+| +... ..++
T Consensus 38 ~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~ 117 (974)
T PLN02843 38 DGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKT 117 (974)
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999964 465555444433 1111 3556
Q ss_pred HHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 55 TQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 55 ~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.+.+.+.++.||+ +||. +|+-. ++...-.....+|.++|++|.
T Consensus 118 ~~~~~~~~~~lG~~~Dw~~-~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 118 VDTQRESFKRYGVWGDWEN-PYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHhCCceecCC-CCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7778999999999 9997 44433 344555667789999999998
No 98
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.60 E-value=0.00012 Score=81.77 Aligned_cols=90 Identities=23% Similarity=0.235 Sum_probs=68.9
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc---------c------------------------ccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN---------R------------------------STL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~---------r------------------------~~~ 52 (350)
=+|+|||.|||||+++.++...++|.+ .|.-++.+-.+|.- + -..
T Consensus 55 pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~ 134 (1052)
T PRK14900 55 PPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKE 134 (1052)
T ss_pred CCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHH
Confidence 479999999999999999999999964 57666665555521 0 135
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCee--ecCCHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLG--LNYDEGPFY--QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlG--l~~de~~~~--QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
++.+.|.+.++.|| ++|+. +|+ ..++...-..+..+|.++|++|.
T Consensus 135 ~~~~~~~~~~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 135 QYGSRIGEQHKALGASLDWQR-ERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHhchheecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67788999999999 56665 443 44556777778889999999998
No 99
>PLN02381 valyl-tRNA synthetase
Probab=97.57 E-value=0.00012 Score=81.67 Aligned_cols=93 Identities=24% Similarity=0.269 Sum_probs=68.8
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc---------------------------------cc
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN---------------------------------RS 50 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~---------------------------------r~ 50 (350)
+==+|++||.|||||+++.++...++|.+ .|.-++.+-.+|.. .-
T Consensus 133 ~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~ 212 (1066)
T PLN02381 133 VLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKW 212 (1066)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHH
Confidence 33479999999999999999999999964 46666655555521 01
Q ss_pred cHHHHHHHHHHHHHcC--CCCCCCCeeec--CCHHHHHHHHHHHHHCCceecc
Q psy2381 51 TLSATQTIIDGMKWLG--LNYDEGPFYQT--KRINRYFEIINYLLSNDYAYYC 99 (350)
Q Consensus 51 ~~~~~~~i~~dL~wlG--l~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~C 99 (350)
..++.+.|.+.++.|| ++|+. +|+-. ++...-..+..+|.++|++|.-
T Consensus 213 ~~~~~~~~~~q~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 213 KDEYGGTILNQLRRLGASLDWSR-ECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHhCchhccCC-ccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 3567788899999999 56766 44433 3445556778899999999984
No 100
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=8.9e-05 Score=79.83 Aligned_cols=91 Identities=22% Similarity=0.224 Sum_probs=63.8
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEE---Eec-------------CCCcccccHHHHHHHHHHHHHcCC--
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFIL---RIE-------------DTDINRSTLSATQTIIDGMKWLGL-- 67 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iL---Rie-------------DtD~~r~~~~~~~~i~~dL~wlGl-- 67 (350)
-=|.|||.||+||.|++.+...+||.+ .|.=+| =++ .+||..-...+.+.+.+.|+.||+
T Consensus 41 mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~si 120 (814)
T COG0495 41 MFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSI 120 (814)
T ss_pred CCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCcc
Confidence 349999999999999999999999854 343333 111 246666678899999999999986
Q ss_pred CCCCCCeeec-CCHHHHHHHHHHHHHCCceec
Q psy2381 68 NYDEGPFYQT-KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 68 ~~de~~~~QS-~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+|+.....-. ++-.--+-...+|.++|++|.
T Consensus 121 DW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 121 DWRREFATCDPEYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred ccccceecCCccHHHHHHHHHHHHHHCCCEEe
Confidence 5665322222 222222334668999999998
No 101
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.54 E-value=0.00019 Score=79.63 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=67.4
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc-----------------c----------------cccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDI-----------------N----------------RSTL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~-----------------~----------------r~~~ 52 (350)
=+|.|||.||+||+++..+...++|.+ .|.-+++.=..|. + ..+.
T Consensus 48 ~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~ 127 (975)
T PRK06039 48 GPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVL 127 (975)
T ss_pred CCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHH
Confidence 479999999999999999999999964 5766665544431 0 1246
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCeeecC--CHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLG--LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlG--l~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~ 98 (350)
.+.+.+.+.++.|| ++|+. +|+-.+ +.+.-.....+|.++|++|.
T Consensus 128 ~~~~~~~~~~~rlG~~~Dw~~-~y~T~d~~y~~~v~~~F~~l~~kGliyr 176 (975)
T PRK06039 128 RYTDEWEEYTERLGRWVDFDN-PYKTLDNEYMESVWWALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHHHHHhCceeecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67888999999999 78887 554443 33444555779999999998
No 102
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.52 E-value=0.00017 Score=81.19 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=71.0
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc---------------------------------cccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN---------------------------------RSTL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~---------------------------------r~~~ 52 (350)
=+|.+||.||+||+++.++.+.++|.+ .|.-+++.-.+|.- ..+.
T Consensus 109 gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~ 188 (1205)
T PTZ00427 109 GPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVL 188 (1205)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHH
Confidence 369999999999999999999999965 58888877776621 0135
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLG--LNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlG--l~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+|.+.+.+.++.|| ++||. +|+-. ++.+.-..+..+|.++|++|.
T Consensus 189 ~~~~~~~~~~~rlG~~iDw~~-~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 189 KYSNEWVKTVERIGRWIDFKN-DYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHhCcEEecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 57788899999999 89997 55433 445666777889999999998
No 103
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.45 E-value=0.00026 Score=74.71 Aligned_cols=75 Identities=25% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHH-HhCCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 198 KITHVIRGDDHINNTPRQINILK-ALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~-aLg~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
-++..+-|.|++.+=.....+.. ++--+.| ....++++++.+|+||||++|+ ++..++.++ +.++++|.+++..+
T Consensus 514 P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~~ 592 (601)
T PF00133_consen 514 PVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASSA 592 (601)
T ss_dssp SBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHHS
T ss_pred CcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhcC
Confidence 46667779999876554444443 4432333 5677799999999999999997 688889887 89999999998654
No 104
>PLN02882 aminoacyl-tRNA ligase
Probab=97.45 E-value=0.00027 Score=79.49 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=69.8
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc----------------c-----------------ccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN----------------R-----------------STL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~----------------r-----------------~~~ 52 (350)
-+|.+||.+|+||+++.++.+.++|.+ .|.-++++-.+|.- + .+.
T Consensus 45 gPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~ 124 (1159)
T PLN02882 45 GPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVT 124 (1159)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHH
Confidence 379999999999999999999999964 57777766655520 0 135
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLG--LNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlG--l~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.|.+.+.+.++.|| ++||. +|+-. ++.+.-.....+|.++|++|.
T Consensus 125 ~~~~~~~~~~~rlG~~~D~~~-~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 125 RYSKEWEKTVTRTGRWIDFEN-DYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHHcCcEEECCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67888999999999 89997 45443 444555667889999999998
No 105
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.41 E-value=0.00018 Score=79.51 Aligned_cols=70 Identities=23% Similarity=0.101 Sum_probs=50.2
Q ss_pred EEEeCCCCCCCH-HHHHHHHHHhCCC---CC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 201 HVIRGDDHINNT-PRQINILKALGVT---LP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 201 hvIRG~D~l~~t-~~q~~l~~aLg~~---~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
..+-|.|++.+- ...++ ..+..++ .| .+.|.++++. +|+||||+.|+ +++.++.++ |.++++|.||+..|
T Consensus 576 ~~~~GkDii~~H~~~~i~-~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~-yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIF-HHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEK-FGADVARLYIADAA 651 (938)
T ss_pred EEEEeeccccchHHHHHH-HHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhcC
Confidence 334588887542 22222 2233333 35 5778888876 89999999998 789999887 99999999999865
No 106
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.027 Score=60.19 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=50.7
Q ss_pred CccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCceEeeceeecCC-C-ceeccCCCC--CCHHHHHH
Q psy2381 183 IPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDSN-K-VKISKRKEA--TDIMYYKK 257 (350)
Q Consensus 183 ~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~-~P~y~H~pll~~~~-g-~KLSKR~g~--~~l~~l~~ 257 (350)
..+|-.--+.|-...+.++|.-|.|-...--.-..+.+.+|.. .|...|.+++.+-+ | .||||+... +.+.+
T Consensus 160 ll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D--- 236 (682)
T PTZ00348 160 QVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED--- 236 (682)
T ss_pred HHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC---
Confidence 3344433344444567788999998742222224445677743 56666778887764 3 699999843 33332
Q ss_pred cCCCHHHHHHHHHH
Q psy2381 258 KGFLPEAILNYLAR 271 (350)
Q Consensus 258 ~G~~peal~~~l~~ 271 (350)
+|+.|..-+..
T Consensus 237 ---spe~I~kKI~k 247 (682)
T PTZ00348 237 ---TEEDVARKIRQ 247 (682)
T ss_pred ---CHHHHHHHHHh
Confidence 67777777764
No 107
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.00058 Score=75.72 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=65.1
Q ss_pred eeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC-------------------------ccc-------ccH
Q psy2381 7 RFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD-------------------------INR-------STL 52 (350)
Q Consensus 7 RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD-------------------------~~r-------~~~ 52 (350)
=-+|.|||.||+||+++.++...++|.+ .|.-++.+=..| +.. -..
T Consensus 60 dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~ 139 (961)
T PRK13804 60 DGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYAL 139 (961)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHH
Confidence 3479999999999999999999999964 465554333322 110 134
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
++++.+.+.++.||+ +|+. +|.-. ++...-.....+|.++|++|+
T Consensus 140 ~~i~~~~~~~~rlG~~~Dw~~-~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 140 SWIDVQREEFKRLGVLGDWDN-PYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHhCceecCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567788999999998 5886 44433 334555666788999999998
No 108
>KOG0435|consensus
Probab=97.10 E-value=0.00041 Score=72.27 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=65.4
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEE----------EEecC------CCcccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFI----------LRIED------TDINRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~i----------LRieD------tD~~r~~~~~~~~i~~dL~wl 65 (350)
.+.--=|.|+|.|||||+|.+.++...||-+ +|-=+ |--|+ ++|.-=....++...+-|..|
T Consensus 60 YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~l 139 (876)
T KOG0435|consen 60 YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSL 139 (876)
T ss_pred eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHc
Confidence 3444559999999999999999999999965 35333 32222 334434567788888999999
Q ss_pred CC--CCCCCCee-ecCCHHHHHHHHHHHHHCCceec
Q psy2381 66 GL--NYDEGPFY-QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 66 Gl--~~de~~~~-QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
|+ +||..+.. -.++..--+-..-+|.++|.||.
T Consensus 140 g~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 140 GISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred CcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 96 67764211 12333333445679999999998
No 109
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0019 Score=69.98 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=67.4
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc-----------------------cc---------cHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN-----------------------RS---------TLSA 54 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~-----------------------r~---------~~~~ 54 (350)
+|.+||.||||||.+..+-..++|.+ .|.=+|=+-.||.. |+ ++++
T Consensus 41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~ 120 (877)
T COG0525 41 PPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES 120 (877)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence 69999999999999999999999864 46555544455421 21 4788
Q ss_pred HHHHHHHHHHcCC--CCCCCCeee--cCCHHHHHHHHHHHHHCCceec
Q psy2381 55 TQTIIDGMKWLGL--NYDEGPFYQ--TKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 55 ~~~i~~dL~wlGl--~~de~~~~Q--S~r~~~y~~~~~~L~~~G~aY~ 98 (350)
...|.+-|+.||+ +|+.. ++. -++....+++.-+|.++|..|+
T Consensus 121 ~~~I~~Q~~rLG~S~DWsrE-~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 121 GGTIREQLRRLGVSVDWSRE-RFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHhCCCcccccc-cccCCHHHHHHHHHHHHHHHHCCceee
Confidence 8999999999996 55542 222 2445777888999999999998
No 110
>PLN02959 aminoacyl-tRNA ligase
Probab=96.76 E-value=0.0027 Score=71.31 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=35.8
Q ss_pred eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 229 YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 229 y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+...++++ .+|+||||++|+ +++.++.+. |.++++|.||+..+
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~k-yGADalRl~la~~~ 749 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEE-FSADATRFALADAG 749 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHH-hCchHHHHHHhhcC
Confidence 55556665 799999999997 788888876 99999999998753
No 111
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.75 E-value=0.0064 Score=67.47 Aligned_cols=93 Identities=18% Similarity=0.051 Sum_probs=61.7
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEE---ec----------------------------CCC-----
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILR---IE----------------------------DTD----- 46 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLR---ie----------------------------DtD----- 46 (350)
++==+|.|||.||+||+++.++...+||.+ .|.=+|. ++ ++.
T Consensus 29 i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~ 108 (938)
T TIGR00395 29 LTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELL 108 (938)
T ss_pred EecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHH
Confidence 334479999999999999999999999853 3443332 11 111
Q ss_pred ----cccccHHHHHHHHHHHHHcCC--CCCCCCeeecC--CHHHHHHHHHHHHHCCceec
Q psy2381 47 ----INRSTLSATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 47 ----~~r~~~~~~~~i~~dL~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~ 98 (350)
+..-...+...+.++|+.||+ +|+. .|.-.+ +...-+....+|.++|++|.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r-~~~T~dp~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 109 KFTDPEYIVEYFSREAESACKSMGYSIDWRR-SFKTTDPYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHhCceEECCC-CccCCChhHHHHHHHHHHHHHHCCCEec
Confidence 111124556789999999996 5555 343333 33444556779999999998
No 112
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.66 E-value=0.0071 Score=66.54 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHh---CCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 198 KITHVIRGDDHINNTPRQINILKAL---GVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aL---g~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~l 272 (350)
..+..+-|.|++..- .|..++.++ |..+| ...-++++++.+|+|||||+|+ ++..++.+. +.++++|.|++..
T Consensus 564 P~d~~i~G~Di~r~W-f~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRGW-FYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhccH-HHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC
Confidence 456667789996542 344444432 65555 3444567777899999999997 788888876 9999999999976
No 113
>KOG2713|consensus
Probab=96.61 E-value=0.003 Score=59.93 Aligned_cols=137 Identities=21% Similarity=0.306 Sum_probs=85.4
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc---CCeEEEEecCCC------cccccHHHHHHHHHHHHHcCCCCCCC-CeeecC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHF---NGIFILRIEDTD------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTK 78 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~---~G~~iLRieDtD------~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~ 78 (350)
.--|||.+||||...|+-+|.--... +-..++-|-|.- +++.-..+.-.....|-..||++... .++||+
T Consensus 19 GIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~ 98 (347)
T KOG2713|consen 19 GIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSSLFVQSD 98 (347)
T ss_pred ccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccceeeeecc
Confidence 35799999999999999999866543 334666666731 12344455555666777889999985 567887
Q ss_pred CHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEE
Q psy2381 79 RINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWN 158 (350)
Q Consensus 79 r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~ 158 (350)
...+.+ -.+.-.|-.+--.|..+-.... . +. |+
T Consensus 99 -Vpqh~e-------l~WlLsslt~mg~L~rm~Q~Ke--------------K-s~-------------~~----------- 131 (347)
T KOG2713|consen 99 -VPQHAE-------LSWLLSSLTTMGRLARMPQWKE--------------K-SE-------------RF----------- 131 (347)
T ss_pred -chHHHH-------HHHHHHhccchHHHHhhHHHHh--------------h-hh-------------hh-----------
Confidence 222322 2233356666566654422110 0 00 01
Q ss_pred eeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCC
Q psy2381 159 DLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDH 208 (350)
Q Consensus 159 D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~ 208 (350)
..+|+- -|.+||-.--+.|-.+.+-|||=-|+|-
T Consensus 132 ------------~~~~~~----vGLftYPvLqAADILLYksThVPVGeDQ 165 (347)
T KOG2713|consen 132 ------------KVGDVP----VGLFTYPVLQAADILLYKSTHVPVGEDQ 165 (347)
T ss_pred ------------ccCccc----eeeecchhHhhhhHhhhccccccCCccH
Confidence 112222 2777887777778888999999999997
No 114
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.60 E-value=0.014 Score=58.32 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred ccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCC
Q psy2381 184 PTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKE 248 (350)
Q Consensus 184 PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g 248 (350)
.+|.+--+.|=.....+.++-|.|-+.|.-.=..|.+-++-..+.-...|++.+.+|.||||+.|
T Consensus 163 f~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~ 227 (377)
T TIGR00234 163 FIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGG 227 (377)
T ss_pred hhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCC
Confidence 44544444444445666888999998877766777776665445556778998889999999975
No 115
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=96.59 E-value=0.0056 Score=64.72 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=60.6
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc--------------------------c-------cccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDI--------------------------N-------RSTL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~--------------------------~-------r~~~ 52 (350)
=+|++||.||+||+++.++-..+||.+ .|.-++.+=-.|. + .-..
T Consensus 30 ~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (601)
T PF00133_consen 30 PPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAE 109 (601)
T ss_dssp ---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhh
Confidence 479999999999999999999999864 4655543222220 0 1146
Q ss_pred HHHHHHHHHHHHcCC--CCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLGL--NYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlGl--~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
++.+.+.++++.||+ +|+. +|+-. ++...-.....+|.++|++|+
T Consensus 110 ~~~~~~~~~~~~lG~~~Dw~~-~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 110 EFIEEQKEQFKRLGVSIDWDR-EYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHTT--SECTC-EEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhheeeecccCC-ceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 678889999999995 7776 44332 333455566789999999997
No 116
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.49 E-value=0.0098 Score=66.28 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHH--HhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 197 MKITHVIRGDDHINNTPRQINILK--ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~~--aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~l 272 (350)
.-.+.++-|.|++..-+.-..... .+|-+++ ...-++++++.+|+|||||.|+ ++..++.++ +.++++|.||+..
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls~ 622 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLSS 622 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHhC
Confidence 345556679998754322222211 2244443 4566678888899999999997 788899887 8999999999987
Q ss_pred CC
Q psy2381 273 GW 274 (350)
Q Consensus 273 G~ 274 (350)
+.
T Consensus 623 ~~ 624 (975)
T PRK06039 623 SA 624 (975)
T ss_pred CC
Confidence 64
No 117
>KOG0432|consensus
Probab=96.43 E-value=0.006 Score=65.49 Aligned_cols=90 Identities=30% Similarity=0.351 Sum_probs=70.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc------------------------cc---------cHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN------------------------RS---------TLS 53 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~------------------------r~---------~~~ 53 (350)
+|..||.||||||-|..+-...+|.+ .|.-++=+-.+|.. |+ .++
T Consensus 83 PPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e 162 (995)
T KOG0432|consen 83 PPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEE 162 (995)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHH
Confidence 58889999999999999999999865 57777766666632 11 366
Q ss_pred HHHHHHHHHHHcC--CCCCCCCee-ecCCHHHHHHHHHHHHHCCceec
Q psy2381 54 ATQTIIDGMKWLG--LNYDEGPFY-QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 54 ~~~~i~~dL~wlG--l~~de~~~~-QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+-..|.+.|+.|| ++|+..-+. -.++-....++..+|.++|..|+
T Consensus 163 ~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR 210 (995)
T KOG0432|consen 163 YGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYR 210 (995)
T ss_pred hCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEe
Confidence 7788999999999 577764332 33445677888999999999998
No 118
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=96.36 E-value=0.0083 Score=66.28 Aligned_cols=71 Identities=18% Similarity=0.062 Sum_probs=50.4
Q ss_pred cEEEeCCCCCCCH-HHHHHHHHHhCC---CCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 200 THVIRGDDHINNT-PRQINILKALGV---TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 200 ThvIRG~D~l~~t-~~q~~l~~aLg~---~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+..+-|.|++.+- ...+. ..+..+ +.| ...++++++. +|+|||||+|+ ++..++.++ |.++++|.||+..+
T Consensus 532 D~~~~GkDii~~Hl~~~~~-~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~~ 608 (897)
T PRK12300 532 DWRHSGKDLIPNHLTFFIF-NHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSSA 608 (897)
T ss_pred eEEEeeeccCccHHHHHHH-HHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhCC
Confidence 4445688887651 12222 233223 345 5777788877 89999999997 788888876 89999999999854
No 119
>PLN02882 aminoacyl-tRNA ligase
Probab=96.31 E-value=0.014 Score=65.92 Aligned_cols=74 Identities=18% Similarity=0.080 Sum_probs=52.9
Q ss_pred CcEEEeCCCCCCCHHHHHHHHH--HhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 199 ITHVIRGDDHINNTPRQINILK--ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 199 IThvIRG~D~l~~t~~q~~l~~--aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
.+.++-|.|.+..-+.-..+.. .+|.++| ....++++++.+|+|||||.|+ +...++.++ |.++++|.||+...
T Consensus 568 aD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 568 ADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLINSP 645 (1159)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHhCC
Confidence 4555667777664332222222 2366666 4677899999999999999997 677788875 88999999999654
No 120
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=96.28 E-value=0.019 Score=63.59 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHHH---hCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 197 MKITHVIRGDDHINNTPRQINILKA---LGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~~a---Lg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
.-.+..+-|.|++..- .|..++.+ .|.++| ....++++++.+|+||||+.|+ ++..++.++ |.++++|.|++.
T Consensus 544 ~P~Dl~~~G~Di~r~W-f~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~ 621 (912)
T PRK05743 544 YPADLYLEGSDQHRGW-FQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAS 621 (912)
T ss_pred CCceEEEecccccchH-HHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHh
Confidence 3455567789987422 34444433 355555 3556688889999999999998 678888875 999999999996
No 121
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0086 Score=60.05 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=47.8
Q ss_pred chhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC
Q psy2381 186 YNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA 249 (350)
Q Consensus 186 Y~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~ 249 (350)
|.+--+-|=...+..-=+.|.|-..|.-.=+.+.+.+|..+|.-.|.|+|.+.+|+||||+.+.
T Consensus 168 YpLmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 168 YPLLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred hHHHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCC
Confidence 3333333333334444478999988877777788889997778899999999999999999874
No 122
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.047 Score=59.43 Aligned_cols=86 Identities=26% Similarity=0.166 Sum_probs=57.2
Q ss_pred cEEEeCCCCCC-CHHHHHHHHHHhCCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCC
Q psy2381 200 THVIRGDDHIN-NTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (350)
Q Consensus 200 ThvIRG~D~l~-~t~~q~~l~~aLg~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~ 275 (350)
+..+-|-|.+. -..+.+..--.|.-+.| ...-++|+.+.+|+||||++|+ +...++.++ |..+|+|.+|+.++-
T Consensus 480 ~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~~~~- 557 (877)
T COG0525 480 DLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLASLAS- 557 (877)
T ss_pred ccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHhccC-
Confidence 33456777764 23344444445555667 3344478899999999999998 566777776 889999999998764
Q ss_pred CCCccccCHHHH
Q psy2381 276 HGNEEIFSIKQF 287 (350)
Q Consensus 276 ~~~~~~~~~~el 287 (350)
++..-.++.+.+
T Consensus 558 ~G~Di~~~~~~~ 569 (877)
T COG0525 558 PGRDINFDEKRV 569 (877)
T ss_pred CCcccCcCHHHH
Confidence 333333455444
No 123
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=95.32 E-value=0.07 Score=59.47 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=50.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHhC---CCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 199 ITHVIRGDDHINNTPRQINILKALG---VTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 199 IThvIRG~D~l~~t~~q~~l~~aLg---~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~l 272 (350)
.+..+-|.|.+. .=.|..++.+++ ..+| ...-++++++.+|+||||+.|+ +...++.+. |.++++|.|++.-
T Consensus 584 aD~~~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~lls~ 660 (961)
T PRK13804 584 ADLYLEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLWVASV 660 (961)
T ss_pred ceEEEEEccccc-HHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHHHHhC
Confidence 344566788753 224445555553 3344 3444488889999999999998 677888865 9999999999963
No 124
>PLN02843 isoleucyl-tRNA synthetase
Probab=95.20 E-value=0.059 Score=60.15 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=50.6
Q ss_pred cEEEeCCCCCCCHHHHHHHHH---HhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHc--------CCCHHHHH
Q psy2381 200 THVIRGDDHINNTPRQINILK---ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK--------GFLPEAIL 266 (350)
Q Consensus 200 ThvIRG~D~l~~t~~q~~l~~---aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~--------G~~peal~ 266 (350)
+..+-|.|.+..= .|..++. +.|..++ .+.-++++++.+|+||||+.|+ ++..++.+. -+.++++|
T Consensus 566 Dl~~eG~Di~rgW-f~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR 644 (974)
T PLN02843 566 DLYLEGSDQHRGW-FQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLR 644 (974)
T ss_pred eeeeeeccccchH-HHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHH
Confidence 3445688886432 3444433 2354343 3444488889999999999998 688888872 38899999
Q ss_pred HHHHHhCC
Q psy2381 267 NYLARLGW 274 (350)
Q Consensus 267 ~~l~~lG~ 274 (350)
.|++....
T Consensus 645 ~~l~~~~~ 652 (974)
T PLN02843 645 LWVASVDY 652 (974)
T ss_pred HHHHhccc
Confidence 99986443
No 125
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=95.10 E-value=0.075 Score=60.39 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=50.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHH-HHhCCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 199 ITHVIRGDDHINNTPRQINIL-KALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 199 IThvIRG~D~l~~t~~q~~l~-~aLg~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
.+.++-|.|.+..-..-..+. -++--..| ...-++++++.+|+|||||.|+ +...++.++ |.++|+|.||+..+
T Consensus 674 aD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~ 751 (1205)
T PTZ00427 674 ADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSV 751 (1205)
T ss_pred ceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcC
Confidence 455566888765443322222 23322345 3555688889999999999998 566677765 88999999999754
No 126
>PLN02943 aminoacyl-tRNA ligase
Probab=94.82 E-value=0.081 Score=58.97 Aligned_cols=69 Identities=25% Similarity=0.214 Sum_probs=48.8
Q ss_pred CcEEEeCCCCCCCHHHHHHHHH--HhCC----CCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHH
Q psy2381 199 ITHVIRGDDHINNTPRQINILK--ALGV----TLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYL 269 (350)
Q Consensus 199 IThvIRG~D~l~~t~~q~~l~~--aLg~----~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l 269 (350)
.+..+-|.|.+.- |++. ++|. ..| .+.-++++++.+|+||||+.|+ ++..++.++ |.|+++|.||
T Consensus 537 ~dl~~~G~Dii~f-----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l 610 (958)
T PLN02943 537 TTVLETGHDILFF-----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTL 610 (958)
T ss_pred CeEEEEeehHHHH-----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHH
Confidence 3444558888732 3333 2333 235 3555567778999999999997 788898876 9999999999
Q ss_pred HHhC
Q psy2381 270 ARLG 273 (350)
Q Consensus 270 ~~lG 273 (350)
+..+
T Consensus 611 ~~~~ 614 (958)
T PLN02943 611 ALGT 614 (958)
T ss_pred HhCC
Confidence 8744
No 127
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=94.80 E-value=0.074 Score=59.86 Aligned_cols=72 Identities=25% Similarity=0.185 Sum_probs=49.0
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHh--CCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 200 THVIRGDDHINNTPRQINILKAL--GVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 200 ThvIRG~D~l~~t~~q~~l~~aL--g~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+..+-|.|.+..-+. ..+...+ ....| ...-++++++.+|+||||+.|+ ++..++.+. |.++++|.||+..+
T Consensus 493 d~~~~G~Dii~~W~a-~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~ 569 (1052)
T PRK14900 493 SVMETGHDIIFFWVA-RMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALT 569 (1052)
T ss_pred hhhcccccHHhHHHH-HHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcC
Confidence 334557777643222 2222222 12345 3556688888899999999997 788888876 89999999999864
No 128
>KOG1195|consensus
Probab=94.74 E-value=0.15 Score=52.04 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=56.4
Q ss_pred CCCeEEEecCCCccc---hhhhhhhcc----cCCCcEEE-eCCCCCCCHHHHHHHHHHhCCCC-CceEeeceeecCCCce
Q psy2381 172 LDDLVIVRADGIPTY---NFCAAIDDW----DMKITHVI-RGDDHINNTPRQINILKALGVTL-PFYGHLPMVIDSNKVK 242 (350)
Q Consensus 172 ~~D~Vl~R~dG~PtY---~~a~vVDD~----~~gIThvI-RG~D~l~~t~~q~~l~~aLg~~~-P~y~H~pll~~~~g~K 242 (350)
.+--++.|+||...| ++|-++|-. .-.+-.|+ ||++-+-+.- ..+.+++|.+- -...|+++= -+..
T Consensus 293 ~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~~l--f~ilk~mg~~~a~~~qHV~~G---~v~G 367 (567)
T KOG1195|consen 293 AGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFCQL--FEILKKMGFDWAKKLQHVNFG---RVQG 367 (567)
T ss_pred cceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHHHHH--HHHHHHhCchhhhhcceeccc---cccc
Confidence 345688999998777 577777522 22333344 5554422222 33457888763 357888774 3567
Q ss_pred eccCCCCC-CHHHHHHcCCCHHHHHHHHHH
Q psy2381 243 ISKRKEAT-DIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 243 LSKR~g~~-~l~~l~~~G~~peal~~~l~~ 271 (350)
||.|+|.+ -+.+..++ .-+.+.+.++.
T Consensus 368 msTRkG~~~fl~dil~e--~re~m~e~M~s 395 (567)
T KOG1195|consen 368 MSTRKGKVVFLDDILEE--AREQMLEVMAS 395 (567)
T ss_pred ccccCCceeeHHHHHHH--HHHHHHHHHHh
Confidence 99999974 45666554 25566666665
No 129
>PLN02959 aminoacyl-tRNA ligase
Probab=94.63 E-value=0.064 Score=60.49 Aligned_cols=30 Identities=23% Similarity=0.093 Sum_probs=25.7
Q ss_pred eEeeC-CCCCCcCchhhHHHHHHHHHHHHHc
Q psy2381 5 RTRFA-PSPTGNLHIGGIRTALFSWAYARHF 34 (350)
Q Consensus 5 ~~RFA-PsPtG~lHiG~~rtal~n~l~Ar~~ 34 (350)
..=|+ |.+||.|||||++|.......||.+
T Consensus 48 ~i~~ppPY~NG~lHiGHa~t~t~~D~i~Ryk 78 (1084)
T PLN02959 48 FGNFPYPYMNGLLHLGHAFSLSKLEFAAAYH 78 (1084)
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 34455 9999999999999999999999854
No 130
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.05 Score=59.11 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=53.5
Q ss_pred cccCCCcEEEeCCCCCCCHH-----HHHHHHHHhCCCC--C--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHH
Q psy2381 194 DWDMKITHVIRGDDHINNTP-----RQINILKALGVTL--P--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPE 263 (350)
Q Consensus 194 D~~~gIThvIRG~D~l~~t~-----~q~~l~~aLg~~~--P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~pe 263 (350)
++.+-|+.=|-|.||..+-- .|.+|+..=-|+. | .-..-++++..+|+||||++|+ +++++..++ |.++
T Consensus 522 ~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yGAD 600 (814)
T COG0495 522 NYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YGAD 600 (814)
T ss_pred hcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hCch
Confidence 34567777788888854322 2222222112332 3 1344466666689999999997 799999987 8899
Q ss_pred HHHHHHHHhC
Q psy2381 264 AILNYLARLG 273 (350)
Q Consensus 264 al~~~l~~lG 273 (350)
++|-|++..|
T Consensus 601 t~Rl~~m~~a 610 (814)
T COG0495 601 TVRLYIMFAA 610 (814)
T ss_pred HHHHHHHhhC
Confidence 9999999876
No 131
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=94.25 E-value=0.082 Score=58.54 Aligned_cols=82 Identities=18% Similarity=0.069 Sum_probs=55.8
Q ss_pred CchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----c------------------------------------ccccHH
Q psy2381 16 LHIGGIRTALFSWAYARHF--NGIFILRIEDTD----I------------------------------------NRSTLS 53 (350)
Q Consensus 16 lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----~------------------------------------~r~~~~ 53 (350)
||+||+++.++...+||.+ .|.-+++.=-.| | ..-...
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999964 566666532222 1 011233
Q ss_pred HHHHHHHHHHHcCC--CCCCCCeeecC--CHHHHHHHHHHHHHCCceec
Q psy2381 54 ATQTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 54 ~~~~i~~dL~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~ 98 (350)
|.+.+.++++.||+ +|+. +|.-.+ +...-.....+|.++|++|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r-~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRR-EFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCC-CeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 45778999999995 7776 555444 23333455778999999997
No 132
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=0.11 Score=57.31 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=64.5
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEe----------c---------------CCCcc-------cccHH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRI----------E---------------DTDIN-------RSTLS 53 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRi----------e---------------DtD~~-------r~~~~ 53 (350)
-+|..||.+|||||.+=++-.+..|.+ .|-.+-|+ | +...+ ....+
T Consensus 56 GPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~ 135 (933)
T COG0060 56 GPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALE 135 (933)
T ss_pred CCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHH
Confidence 379999999999999999998888864 24333222 2 11110 12467
Q ss_pred HHHHHHHHHHHcCC--CCCCCCee--ecCCHHHHHHHHHHHHHCCceec
Q psy2381 54 ATQTIIDGMKWLGL--NYDEGPFY--QTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 54 ~~~~i~~dL~wlGl--~~de~~~~--QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
+++...++++.||+ +|+. ||. .-+..+.--.+..++.++|++|.
T Consensus 136 ~v~~q~~~f~RLGv~~Dw~n-pY~Tmd~~ye~~~~~~f~~~~~kGllyr 183 (933)
T COG0060 136 QVDEQKEQFKRLGVWGDWEN-PYKTMDPSYEESVWWAFKELYEKGLLYR 183 (933)
T ss_pred HHHHHHHHHHhheEeeccCC-CeecCCHHHHHHHHHHHHHHHHCCCeec
Confidence 88888999999996 8887 553 33455555667889999999998
No 133
>PLN02381 valyl-tRNA synthetase
Probab=93.49 E-value=0.21 Score=56.32 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHH-HhCCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHc--------------
Q psy2381 197 MKITHVIRGDDHINNTPRQINILK-ALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK-------------- 258 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~~-aLg~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~-------------- 258 (350)
.-.+..+-|-|.+.--+....+.. ++.-..| ...-++++++.+|+||||+.|+ +...++.+.
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 345556678777643333332222 2333456 4556689999999999999998 555666552
Q ss_pred ----------------------CCCHHHHHHHHHHhCC
Q psy2381 259 ----------------------GFLPEAILNYLARLGW 274 (350)
Q Consensus 259 ----------------------G~~peal~~~l~~lG~ 274 (350)
-|.++|+|.+|+..+.
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~ 724 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTA 724 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCc
Confidence 2679999999997654
No 134
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=92.72 E-value=0.12 Score=56.76 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=53.9
Q ss_pred cCCCcEEEeCCCCCCC-----HHHHHHHHHH--hCCCCC--ceEeeceeec----CCCc---------------------
Q psy2381 196 DMKITHVIRGDDHINN-----TPRQINILKA--LGVTLP--FYGHLPMVID----SNKV--------------------- 241 (350)
Q Consensus 196 ~~gIThvIRG~D~l~~-----t~~q~~l~~a--Lg~~~P--~y~H~pll~~----~~g~--------------------- 241 (350)
.+-++..|-|.||... ...|..|+.. +.-..| .....+++++ .+|+
T Consensus 518 ~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 597 (842)
T TIGR00396 518 WLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGEL 597 (842)
T ss_pred cCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcc
Confidence 4567777888887322 2234344331 111345 4566688888 7888
Q ss_pred ------eeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 242 ------KISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 242 ------KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
|||||+|+ +++.++.++ +.++++|.|++..+
T Consensus 598 ~~~~~~KMSKS~GN~v~p~~ii~~-ygaDalRl~~l~~~ 635 (842)
T TIGR00396 598 VVVGYEKMSKSKGNGIDPQEIVKK-HGADALRLYIMFMG 635 (842)
T ss_pred cccchhhhhhcCCCcCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999997 789999987 99999999998754
No 135
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=92.21 E-value=0.21 Score=55.99 Aligned_cols=75 Identities=21% Similarity=0.083 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCC--CCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHc--------------
Q psy2381 198 KITHVIRGDDHINNTPRQINILKALGV--TLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKK-------------- 258 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aLg~--~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~-------------- 258 (350)
-.+..+-|.|.+.-- .+..++..+.+ +.| ....++++++.+|+||||+.|+ +...++.+.
T Consensus 538 P~d~~~~G~Dii~~W-~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~ 616 (995)
T PTZ00419 538 PTSLLETGSDILFFW-VARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGN 616 (995)
T ss_pred CCcEEEechhHHhHH-HHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccc
Confidence 445556687765421 22222222222 456 4667789999999999999998 455555541
Q ss_pred ----------------------CCCHHHHHHHHHHhC
Q psy2381 259 ----------------------GFLPEAILNYLARLG 273 (350)
Q Consensus 259 ----------------------G~~peal~~~l~~lG 273 (350)
-|.++|+|.||+..+
T Consensus 617 ~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~ 653 (995)
T PTZ00419 617 LPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYT 653 (995)
T ss_pred cchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcC
Confidence 277899999999855
No 136
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=92.14 E-value=0.21 Score=54.69 Aligned_cols=69 Identities=22% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCCC-----HHHHHHHHHHhC---CCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHH
Q psy2381 197 MKITHVIRGDDHINN-----TPRQINILKALG---VTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAI 265 (350)
Q Consensus 197 ~gIThvIRG~D~l~~-----t~~q~~l~~aLg---~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal 265 (350)
+-++..+-|.||..+ ...|..|+ ..| -..| ...|.+++ ||||+.|+ ++..++.++ |.++++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~-~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~-ygaD~l 593 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLR-DLGLVSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEK-YGADTA 593 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHH-HhhcccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHH-cChHHH
Confidence 567777889888543 23333333 223 2345 57888887 99999998 788898876 999999
Q ss_pred HHHHHHhC
Q psy2381 266 LNYLARLG 273 (350)
Q Consensus 266 ~~~l~~lG 273 (350)
|.|++..|
T Consensus 594 Rl~l~~~~ 601 (805)
T PRK00390 594 RLFEMFAG 601 (805)
T ss_pred HHHHHhcC
Confidence 99998764
No 137
>PLN02563 aminoacyl-tRNA ligase
Probab=91.75 E-value=0.21 Score=55.73 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred eeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 242 KISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 242 KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
||||++|+ +...++.++ |.++++|.|++..+
T Consensus 723 KMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~a 754 (963)
T PLN02563 723 KMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMG 754 (963)
T ss_pred ccccccCCcCCHHHHHHH-cCcHHHHHHHHhCC
Confidence 99999997 788888876 89999999999866
No 138
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.41 E-value=0.11 Score=57.09 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=48.3
Q ss_pred cEEEeCCCCCCCHHHHHHHH-HHhCCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 200 THVIRGDDHINNTPRQINIL-KALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 200 ThvIRG~D~l~~t~~q~~l~-~aLg~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+.++-|.|-..-=..=..+. -++--.+| ...-++++++.+|+|||||.|+ ++..++.++ +.+++||.|++.--
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ssd 633 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASSD 633 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeecC
Confidence 45667777653222112222 22222344 3566789999999999999998 567777765 77899999988644
No 139
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=89.07 E-value=1 Score=36.16 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=28.1
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcc
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDIN 48 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~ 48 (350)
+.|+.++ |++|+||+..+-.+. ....+.++.|.|..+.
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~a~----~~~d~~i~~i~~~~~~ 39 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICRAK----GIADQCVVRIDDNPPV 39 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHHHH----HhCCcEEEEEcCCCcc
Confidence 6799999 999999999743322 2236788888887654
No 140
>KOG0433|consensus
Probab=85.92 E-value=3.5 Score=44.40 Aligned_cols=89 Identities=18% Similarity=0.373 Sum_probs=59.2
Q ss_pred CCCCcCchhhHHHHHHHHH-----HHHHcCCeEEE-------EecCCC-----cc----------c-----ccHHHHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWA-----YARHFNGIFIL-------RIEDTD-----IN----------R-----STLSATQTI 58 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l-----~Ar~~~G~~iL-------RieDtD-----~~----------r-----~~~~~~~~i 58 (350)
+.+|.||+||++.-++-++ .|...+..|+. -||-|- ++ | ...++++..
T Consensus 65 danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q 144 (937)
T KOG0433|consen 65 DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQ 144 (937)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHH
Confidence 3789999999998887544 44444444443 223210 00 1 135677888
Q ss_pred HHHHHHcCC--CCCCCCe--eecCCHHHHHHHHHHHHHCCceeccC
Q psy2381 59 IDGMKWLGL--NYDEGPF--YQTKRINRYFEIINYLLSNDYAYYCY 100 (350)
Q Consensus 59 ~~dL~wlGl--~~de~~~--~QS~r~~~y~~~~~~L~~~G~aY~C~ 100 (350)
++.+...|+ +|.. || ++-++...-.++..+|.++|.+|+-+
T Consensus 145 ~e~F~r~gv~aDW~n-~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 145 MEAFRRWGVTADWEN-PYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred HHHHHHheeeccCCC-ceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 888899998 5665 44 46666666677788999999999854
No 141
>KOG4426|consensus
Probab=77.19 E-value=12 Score=38.19 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=48.8
Q ss_pred eEEEecCCCccchhhhhh--------hcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCC---CceEee--ceeecCCCc
Q psy2381 175 LVIVRADGIPTYNFCAAI--------DDWDMKITHVIRGDDHINNTPRQINILKALGVTL---PFYGHL--PMVIDSNKV 241 (350)
Q Consensus 175 ~Vl~R~dG~PtY~~a~vV--------DD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~---P~y~H~--pll~~~~g~ 241 (350)
..+.+|||-+||+=+... .-.++-|--|=-|+-.+-+|..-. .+..||-- |+..|+ +++++.+|+
T Consensus 369 LtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkA--ar~~gwld~~~~RV~HvgFGlVLGeD~K 446 (656)
T KOG4426|consen 369 LTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKA--ARKAGWLDPTYPRVEHVGFGLVLGEDKK 446 (656)
T ss_pred eEEEecCCCcccccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHH--HHHcCccCCCccceeeeeeeeEEccCcc
Confidence 567899999999733321 112222221113554444443222 13458844 566676 889999999
Q ss_pred eeccCCCC-CCHHHHHHcC
Q psy2381 242 KISKRKEA-TDIMYYKKKG 259 (350)
Q Consensus 242 KLSKR~g~-~~l~~l~~~G 259 (350)
|.-.|.|. +-+.+|+++|
T Consensus 447 kFkTRsgetVrL~DLLdEg 465 (656)
T KOG4426|consen 447 KFKTRSGETVRLLDLLDEG 465 (656)
T ss_pred cccccccceeeHHHHHHHH
Confidence 99999985 4555555544
No 142
>KOG0432|consensus
Probab=77.00 E-value=4.1 Score=44.63 Aligned_cols=45 Identities=24% Similarity=0.136 Sum_probs=31.4
Q ss_pred CCCCC-CCHHHHHHHHHHhCCCCC--ceEeeceeecCCCceeccCCCC
Q psy2381 205 GDDHI-NNTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA 249 (350)
Q Consensus 205 G~D~l-~~t~~q~~l~~aLg~~~P--~y~H~pll~~~~g~KLSKR~g~ 249 (350)
|.|.+ --..+.+.|-..|.-+.| ...-+|++.|..|+||||+-|+
T Consensus 553 G~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGN 600 (995)
T KOG0432|consen 553 GHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGN 600 (995)
T ss_pred CchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhcc
Confidence 55553 234566665555544556 4556699999999999999997
No 143
>KOG0433|consensus
Probab=68.15 E-value=40 Score=36.68 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=44.1
Q ss_pred EeCCCCCCCHHHHHHHHH--HhCCCCC--ceEeeceeecCCCceeccCCCCCCHHHHHHcC------CCHHHHHHHHH
Q psy2381 203 IRGDDHINNTPRQINILK--ALGVTLP--FYGHLPMVIDSNKVKISKRKEATDIMYYKKKG------FLPEAILNYLA 270 (350)
Q Consensus 203 IRG~D~l~~t~~q~~l~~--aLg~~~P--~y~H~pll~~~~g~KLSKR~g~~~l~~l~~~G------~~peal~~~l~ 270 (350)
+-|.|-+.-- .|..|+. |-.-..| ...-+++.++++|.||||+-|++.=..+.-+| |..+.+|.+++
T Consensus 571 LEG~DQ~rGW-FQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA 647 (937)
T KOG0433|consen 571 LEGVDQFRGW-FQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVA 647 (937)
T ss_pred EecchhcchH-HHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeee
Confidence 4577765432 4444443 2222345 45566788899999999999986544555566 77788888888
No 144
>KOG1247|consensus
Probab=66.65 E-value=18 Score=36.70 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=63.6
Q ss_pred ceEeeCCCCCCcCchhhHHHHH-HHHHHHHHcC--CeEEEEecCCCc----------------ccccHHHHHHHHHHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTAL-FSWAYARHFN--GIFILRIEDTDI----------------NRSTLSATQTIIDGMKW 64 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal-~n~l~Ar~~~--G~~iLRieDtD~----------------~r~~~~~~~~i~~dL~w 64 (350)
+.|---|..+.-.|+||.-..+ .+..+||... |---++|=.||. ..--+.|.......-+|
T Consensus 17 litsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~W 96 (567)
T KOG1247|consen 17 LITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDW 96 (567)
T ss_pred eeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHh
Confidence 3444568889999999998554 4688998765 455667766662 11123455556667799
Q ss_pred cCCCCCCCCe-eecCCHHHHHHHHHHHHHCCce
Q psy2381 65 LGLNYDEGPF-YQTKRINRYFEIINYLLSNDYA 96 (350)
Q Consensus 65 lGl~~de~~~-~QS~r~~~y~~~~~~L~~~G~a 96 (350)
++|+.|+.-. ..-...++-++...+|.++|+.
T Consensus 97 f~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~ 129 (567)
T KOG1247|consen 97 FKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYL 129 (567)
T ss_pred hcccccccCcccCcchhHHHHHHhhchhhcCCc
Confidence 9999998422 2234557888889999888754
No 145
>KOG0437|consensus
Probab=64.75 E-value=2 Score=46.22 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCCCCH-----HHHHHHHHHhCCCCCce--EeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHH
Q psy2381 198 KITHVIRGDDHINNT-----PRQINILKALGVTLPFY--GHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYL 269 (350)
Q Consensus 198 gIThvIRG~D~l~~t-----~~q~~l~~aLg~~~P~y--~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l 269 (350)
-|+.-+-|.|++.|- .-|.+|+.--.||.-.. +|+ ++ +++||||+.|+ .||++-.+. |..++.|..|
T Consensus 663 PiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHL--mL--NsEKMSKSTGNfmTL~qaieK-Fgad~tRlal 737 (1080)
T KOG0437|consen 663 PIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHL--ML--NSEKMSKSTGNFMTLEQAIEK-FGADGTRLAL 737 (1080)
T ss_pred ceeeeeccccccccceeEeeeehhhhcccccCccceeeCceE--Ee--cchhhccccCCeeeHHHHHHH-hCccceeeee
Confidence 344345588887654 23444444334544333 444 43 48899999998 577776665 7788888777
Q ss_pred HHhCCC
Q psy2381 270 ARLGWS 275 (350)
Q Consensus 270 ~~lG~~ 275 (350)
+-.|=+
T Consensus 738 AdaGD~ 743 (1080)
T KOG0437|consen 738 ADAGDG 743 (1080)
T ss_pred ecccCC
Confidence 776643
No 146
>KOG0437|consensus
Probab=60.54 E-value=14 Score=40.03 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCCCCcCchhhHHHHH---HHHHHHHHcCCeEEE--EecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 10 PSPTGNLHIGGIRTAL---FSWAYARHFNGIFIL--RIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 10 PsPtG~lHiG~~rtal---~n~l~Ar~~~G~~iL--RieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|.-+|.||+||+.+.- |.-.|-|-+|-+.++ -+-.|--+ .....+...+.++-+|-.+|-
T Consensus 53 PYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMP--I~A~AdKLkrEie~fG~ppdf 117 (1080)
T KOG0437|consen 53 PYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMP--IKASADKLKREIELFGCPPDF 117 (1080)
T ss_pred cccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCc--cHHhHHHHHHHHHHhCCCCCC
Confidence 7789999999999875 233344444433333 44555433 345667778888888887774
No 147
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=59.78 E-value=16 Score=38.20 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=81.4
Q ss_pred eeeeecCCCCCCCeEEEecCCCccchhh-----hhhhcccCCCcEEEeCCCCCCCHH---HHHHHHHHhCCCCCceEeec
Q psy2381 162 KGKITISNKELDDLVIVRADGIPTYNFC-----AAIDDWDMKITHVIRGDDHINNTP---RQINILKALGVTLPFYGHLP 233 (350)
Q Consensus 162 ~G~~~~~~~~~~D~Vl~R~dG~PtY~~a-----~vVDD~~~gIThvIRG~D~l~~t~---~q~~l~~aLg~~~P~y~H~p 233 (350)
+.++..++..++|+|+.|.+-.|...-. .+.=|..-.|...+-|--|.-.+- -...+|++++...+.+.+ |
T Consensus 149 Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~-P 227 (522)
T TIGR00440 149 KIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPR-P 227 (522)
T ss_pred eCcCCCCCceEeeeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCC-C
Confidence 3344555778999999998733321100 122233333333334566643332 224788888876655543 5
Q ss_pred eeecCCCceeccCCCCC---CHHHHHHcCCCHH------HHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcc
Q psy2381 234 MVIDSNKVKISKRKEAT---DIMYYKKKGFLPE------AILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQF 304 (350)
Q Consensus 234 ll~~~~g~KLSKR~g~~---~l~~l~~~G~~pe------al~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~ 304 (350)
...... .|.-..... .+..+.+.|+-.. .-+..+.+.| ++++.|.+... .-+.+++...+
T Consensus 228 ~~~~F~--rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG--------~~PeAi~nfl~-~lG~s~~~~~~ 296 (522)
T TIGR00440 228 AQYEFS--RLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRG--------YTPASIREFCN-RIGVTKQDNNI 296 (522)
T ss_pred ceEEEE--EECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCC--------CCHHHHHHHHH-HhCCCCCCCce
Confidence 443222 232211112 3444555554210 0122333444 46666666666 66777777788
Q ss_pred cHHHHHHHHHHHhhcCCHH
Q psy2381 305 NLKKLEWLNNFYIKSYDDK 323 (350)
Q Consensus 305 d~~kL~~~n~~~i~~~~~~ 323 (350)
++.+|+.+|++.+.....+
T Consensus 297 e~~~l~~~~r~f~~~~~~r 315 (522)
T TIGR00440 297 EVVRLESCIREDLNENAPR 315 (522)
T ss_pred ehhhHHHHHHHhhhhcCcc
Confidence 9999999999999866544
No 148
>KOG0434|consensus
Probab=55.25 E-value=4.8 Score=43.14 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=53.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEE-e---------cC-CCcc---------------------c-ccHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH--FNGIFILR-I---------ED-TDIN---------------------R-STLS 53 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLR-i---------eD-tD~~---------------------r-~~~~ 53 (350)
+|-.||-+|-||+.+-.+-...-|. ..|-.+=| | |- +|.+ | -+..
T Consensus 46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmr 125 (1070)
T KOG0434|consen 46 PPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMR 125 (1070)
T ss_pred CccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHH
Confidence 6888999999999888887776663 23433322 1 11 1221 1 1355
Q ss_pred HHHHHHHHHHHcC--CCCCCCCeeecCCHHHHHH---HHHHHHHCCceec
Q psy2381 54 ATQTIIDGMKWLG--LNYDEGPFYQTKRINRYFE---IINYLLSNDYAYY 98 (350)
Q Consensus 54 ~~~~i~~dL~wlG--l~~de~~~~QS~r~~~y~~---~~~~L~~~G~aY~ 98 (350)
|.......+..|| |++|.+ |-+-+...+.. +..+|.++|.+|+
T Consensus 126 YssEWe~tv~RlGRWidF~nd--YkTmyp~FMESvWwvFkeL~~kglVYR 173 (1070)
T KOG0434|consen 126 YSSEWEKTVERLGRWIDFDND--YKTLYPSFMESVWWVFKELHEKGLVYR 173 (1070)
T ss_pred HHHHHHHHHHhhccceeccCC--cceecHHHHHHHHHHHHHHHhcCceec
Confidence 6666667777777 556653 33334444443 4778888998887
No 149
>KOG3349|consensus
Probab=48.85 E-value=12 Score=32.76 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHCCceeccCCCH
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSV 103 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~ 103 (350)
--.+.|++|.++|+.|+|.||.
T Consensus 115 HQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 115 HQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHHHhcCcEEEeeccc
Confidence 3467899999999999999986
No 150
>KOG2145|consensus
Probab=43.93 E-value=22 Score=34.45 Aligned_cols=59 Identities=10% Similarity=0.229 Sum_probs=41.3
Q ss_pred CCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcc-------cccHHHHHHHHHHHHHcCCCCCC
Q psy2381 13 TGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDIN-------RSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 13 tG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~-------r~~~~~~~~i~~dL~wlGl~~de 71 (350)
++.||+||+--+++.-++-...+..+++.++|-..- .....+..+-.+|+-.+|+++..
T Consensus 96 S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 96 SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 678999999999998777778888888877653210 11233444455566678888876
No 151
>KOG2623|consensus
Probab=43.36 E-value=1.5e+02 Score=30.06 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=76.3
Q ss_pred ccchhhhhhhcc----cCCCcEEEeCCCCCCCHHHHH-HHHHHhCCCCCce-EeeceeecCCCceeccCCCC-CCHHHHH
Q psy2381 184 PTYNFCAAIDDW----DMKITHVIRGDDHINNTPRQI-NILKALGVTLPFY-GHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (350)
Q Consensus 184 PtY~~a~vVDD~----~~gIThvIRG~D~l~~t~~q~-~l~~aLg~~~P~y-~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (350)
+||++--+-|=. -.|++.=|.|.|-+.|.-.=. +|-+.++.+.-.| .-+|++...+|.|+-|+.|+ ++++.
T Consensus 209 FtYQ~lQAYDfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp-- 286 (467)
T KOG2623|consen 209 FTYQLLQAYDFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDP-- 286 (467)
T ss_pred HHHHHHHHHhHHHHHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecC--
Confidence 567655554321 157777789999987765443 3334445433334 56799999999999999985 66653
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCC
Q psy2381 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYD 321 (350)
Q Consensus 257 ~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~ 321 (350)
.=-+|=.+-.|...+- + -++++++..|. .++.+.+..+=+.|++.-+
T Consensus 287 -~~tspy~lYQfF~~~p----D---d~v~k~LklfT----------fl~l~eI~~I~~~H~k~P~ 333 (467)
T KOG2623|consen 287 -SKTSPYHLYQFFASLP----D---DDVEKFLKLFT----------FLPLEEIKQILEEHRKEPS 333 (467)
T ss_pred -ccCCcHHHHHHHHhCc----h---hHHHHHHHHHh----------cCCHHHHHHHHHHHhcChh
Confidence 2256777777776532 1 24667777776 4566777777777776544
No 152
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=40.77 E-value=46 Score=30.34 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=37.9
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRY 83 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y 83 (350)
+.+||-| +|+||+... .+.+.+. -..|+=|---+..++. . -|+...||....
T Consensus 9 ~iGRFQP-----fH~GHl~~I--~~al~~~--devII~IGSA~~s~t~------------------~-NPFTa~ER~~MI 60 (196)
T PRK13793 9 FIGRFQP-----FHLAHMQTI--EIALQQS--RYVILALGSAQMERNI------------------K-NPFLAIEREQMI 60 (196)
T ss_pred EEecCCC-----CcHHHHHHH--HHHHHhC--CEEEEEEccCCCCCCC------------------C-CCCCHHHHHHHH
Confidence 6899998 799999544 3444443 3677777666555442 1 267777777777
Q ss_pred HHHHHH
Q psy2381 84 FEIINY 89 (350)
Q Consensus 84 ~~~~~~ 89 (350)
+..+..
T Consensus 61 ~~aL~e 66 (196)
T PRK13793 61 LSNFSL 66 (196)
T ss_pred HHhcch
Confidence 766644
No 153
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=39.61 E-value=70 Score=20.50 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=18.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Q psy2381 252 IMYYKKKGFLPEAILNYLARLGW 274 (350)
Q Consensus 252 l~~l~~~G~~peal~~~l~~lG~ 274 (350)
|..|++.||+.+..+..|..-++
T Consensus 6 v~~L~~mGf~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 6 VQQLMEMGFSREQAREALRACNG 28 (37)
T ss_dssp HHHHHHHTS-HHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC
Confidence 67888999999999999987765
No 154
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=38.38 E-value=46 Score=20.99 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q psy2381 252 IMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 252 l~~l~~~G~~peal~~~l~~ 271 (350)
+.+-++.|++++.++.||..
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 45667889999999999964
No 155
>COG4720 Predicted membrane protein [Function unknown]
Probab=34.95 E-value=30 Score=30.94 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=20.8
Q ss_pred CCCCCcCchhhHHHHHHHHHHHHHcC
Q psy2381 10 PSPTGNLHIGGIRTALFSWAYARHFN 35 (350)
Q Consensus 10 PsPtG~lHiG~~rtal~n~l~Ar~~~ 35 (350)
|.|+|++|+|.+-.++.+.+|--..|
T Consensus 31 p~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 31 PIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred CCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 44559999999999999999865443
No 156
>KOG1247|consensus
Probab=33.84 E-value=25 Score=35.74 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhCCCC-------------------CceEeec--eeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHH
Q psy2381 211 NTPRQINILKALGVTL-------------------PFYGHLP--MVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNY 268 (350)
Q Consensus 211 ~t~~q~~l~~aLg~~~-------------------P~y~H~p--ll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~ 268 (350)
..|-|..||+-+|.+- +...|+. -.++-+..|.||+.|. +-=.+..+.|++|+.-|.|
T Consensus 291 knpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyY 370 (567)
T KOG1247|consen 291 KNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYY 370 (567)
T ss_pred cCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHH
Confidence 3466777777776531 2233442 2345567799999984 3334566789999988888
Q ss_pred HHHhCCCC-CCccccCHHHHHH
Q psy2381 269 LARLGWSH-GNEEIFSIKQFCY 289 (350)
Q Consensus 269 l~~lG~~~-~~~~~~~~~el~~ 289 (350)
|+..- + .....||.++++.
T Consensus 371 Ll~~R--PEssDs~Fsw~df~~ 390 (567)
T KOG1247|consen 371 LLYIR--PESSDSAFSWDDFVL 390 (567)
T ss_pred Hhhcc--CcccCCcCcHHHHHH
Confidence 87643 3 2234466666543
No 157
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=33.15 E-value=87 Score=29.22 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=40.5
Q ss_pred eEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC--CeeecC---------CHHHHHHHHHHHHHCC
Q psy2381 37 IFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--PFYQTK---------RINRYFEIINYLLSND 94 (350)
Q Consensus 37 ~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~--~~~QS~---------r~~~y~~~~~~L~~~G 94 (350)
+-++||||+.|. ...+..+.|.+-|...|+.+--. |.+.-. ....+.++++.+.++|
T Consensus 1 r~lirleDVsP~-~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~G 68 (243)
T PF10096_consen 1 RALIRLEDVSPF-SDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARG 68 (243)
T ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcC
Confidence 358999999984 66778889999999999974431 222211 1456777788888888
No 158
>KOG0434|consensus
Probab=32.65 E-value=2.2e+02 Score=31.24 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=27.9
Q ss_pred eEeeceeecCCCceeccCCCCCC-HHHHHHcCCCHHHHHHHHH
Q psy2381 229 YGHLPMVIDSNKVKISKRKEATD-IMYYKKKGFLPEAILNYLA 270 (350)
Q Consensus 229 y~H~pll~~~~g~KLSKR~g~~~-l~~l~~~G~~peal~~~l~ 270 (350)
..--++++..+|+|||||..+.. -....+ -|..+|+|.||.
T Consensus 588 vIvnGlVLAeDG~KMSKrlkNYPdP~~iin-kYGADalRlYLI 629 (1070)
T KOG0434|consen 588 VIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-KYGADALRLYLI 629 (1070)
T ss_pred eeEeeeEEecccHHHhhhhhcCCCHHHHHH-hhcchheeeeee
Confidence 34558888999999999987632 222232 366777777775
No 159
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=31.62 E-value=58 Score=22.96 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHHCCceeccCCCHHHHHHH
Q psy2381 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESF 109 (350)
Q Consensus 77 S~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~ 109 (350)
-+|+..|..+++.|.++|.-+. |.++|.+.
T Consensus 8 i~RL~~Y~r~L~~l~~~G~~~v---SS~~La~~ 37 (50)
T PF06971_consen 8 IRRLPLYLRYLEQLKEEGVERV---SSQELAEA 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEE----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeeE---CHHHHHHH
Confidence 3789999999999999998775 77888654
No 160
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=31.45 E-value=1.3e+02 Score=18.88 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Q psy2381 252 IMYYKKKGFLPEAILNYLARLGW 274 (350)
Q Consensus 252 l~~l~~~G~~peal~~~l~~lG~ 274 (350)
+..|++.||+.+..+..|..-++
T Consensus 5 v~~L~~mGf~~~~a~~aL~~~~~ 27 (37)
T smart00165 5 IDQLLEMGFSREEALKALRAANG 27 (37)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Confidence 67889999999999999988775
No 161
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=30.87 E-value=54 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEecCCCcc
Q psy2381 18 IGGIRTALFSWAYARHFNGIFILRIEDTDIN 48 (350)
Q Consensus 18 iG~~rtal~n~l~Ar~~~G~~iLRieDtD~~ 48 (350)
.||+-.||+||-+.+.++=+.+.-| |+|+.
T Consensus 92 ~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~ 121 (211)
T COG2344 92 VGNLGRALLNYNFSKKNGMKIVAAF-DVDPD 121 (211)
T ss_pred cChHHHHHhcCcchhhcCceEEEEe-cCCHH
Confidence 6899999999999999888877765 67765
No 162
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=27.43 E-value=1e+02 Score=25.29 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=38.2
Q ss_pred HHHHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHH
Q psy2381 59 IDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRK 111 (350)
Q Consensus 59 ~~dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~ 111 (350)
-+-|+.+||.+|. -.-+..|+.+.+.+-+.|.+.+.+ .+--..+.+...|.
T Consensus 15 EdFf~fF~V~YDp-~vv~V~RLHILkrF~~yL~~~~~~-~~~~e~~~~~~~R~ 65 (105)
T PF03206_consen 15 EDFFDFFGVPYDP-KVVNVNRLHILKRFGQYLRAADFA-PGLSEEEDWAAYRR 65 (105)
T ss_pred HHHHHHhCCCcch-hHHHHhhHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHH
Confidence 3456789999997 567999999999999999999877 44433344445554
No 163
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=26.86 E-value=1e+02 Score=24.30 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=38.9
Q ss_pred cCCCHHHHHHHHHHhCCCCCC-cc-ccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q psy2381 258 KGFLPEAILNYLARLGWSHGN-EE-IFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLIQPI 332 (350)
Q Consensus 258 ~G~~peal~~~l~~lG~~~~~-~~-~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~~~~~~~ 332 (350)
++-+|++|+..|...+....+ .+ .+|.++|+++ .-+....+.---++ -...-.|-..+.+.|.++|.-|
T Consensus 5 E~A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~----GL~g~~~s~~rR~~--l~~~L~iGy~N~KqllkrLN~f 75 (87)
T PF13331_consen 5 EHASPEAIREALENARTEDEEPKESEITWEDLIEL----GLIGGPDSKERREK--LGEYLGIGYGNAKQLLKRLNMF 75 (87)
T ss_pred cCCCHHHHHHHHHHhCccccCCccCcCCHHHHHHC----CCCCCccHHHHHHH--HHHHHCCCCCCHHHHHHHHHHc
Confidence 357899999999998875432 32 5899999874 22333222211111 1222233355566666666544
No 164
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=26.13 E-value=1.9e+02 Score=25.78 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCccc------ccHHHHHHHHHHHHHcCCCCC
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINR------STLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r------~~~~~~~~i~~dL~wlGl~~d 70 (350)
+.+||-| +|+||+..+.. ...+ -.+.++=|-.-++.+ ..++-.+.|...+...|++-+
T Consensus 4 ~~GrF~P-----~H~GHl~~i~~--a~~~--~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~ 67 (181)
T cd02168 4 YIGRFQP-----FHNGHLAVVLI--ALEK--AKKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLA 67 (181)
T ss_pred EeeccCC-----CCHHHHHHHHH--HHHH--CCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcc
Confidence 4689988 69999966554 3333 236666554433222 223334444444555555433
No 165
>PLN02859 glutamine-tRNA ligase
Probab=25.01 E-value=66 Score=35.41 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=34.4
Q ss_pred cCHHHHHHhccccCCCCCCCC-cccHHHHHHHHHHHhhcCCHHHH
Q psy2381 282 FSIKQFCYWFNDCKYLSKSPA-QFNLKKLEWLNNFYIKSYDDKKL 325 (350)
Q Consensus 282 ~~~~el~~~f~~~~~i~~~~~-~~d~~kL~~~n~~~i~~~~~~~~ 325 (350)
++++.|.+... .-+++++.. .|++++|+++|++.|+..+++..
T Consensus 533 ~~PeAi~nFi~-~lG~s~~~~e~i~~~~Le~~~r~~l~~~a~R~m 576 (788)
T PLN02859 533 VTPTAINAFCR-GIGITRSDNSLIRMDRLEHHIREELNKTAPRTM 576 (788)
T ss_pred CCHHHHHHHHH-HhCCCCCCCceecHHHHHhhCHHhhCCcCcchh
Confidence 46666666656 777788777 89999999999999998887653
No 166
>PF08892 YqcI_YcgG: YqcI/YcgG family; InterPro: IPR014988 This group of proteins are functionally uncharacterised. They include YqcI and YcgG from Bacillus subtilis. The alignment contains a conserved FPC motif at the N terminus and CPF at the C terminus.
Probab=24.56 E-value=3.6e+02 Score=24.90 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=55.8
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcC---CeEEEEecCCCcccccHHHHHHHHHHHHHc----CCCCCC
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFN---GIFILRIEDTDINRSTLSATQTIIDGMKWL----GLNYDE 71 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~---G~~iLRieDtD~~r~~~~~~~~i~~dL~wl----Gl~~de 71 (350)
.++..|+++|+..-.+..+..+|..|+-.-... -.||+=++-.......++|++...+.|++| .-.|++
T Consensus 30 ~l~y~f~~~~~~~~~~~~l~~~L~~y~~~~~~~~~~~slvvfF~~~~~~~s~~~ye~~~W~~Lq~Lh~~D~~pWp~ 105 (219)
T PF08892_consen 30 QLRYGFIGDPRSPDDDKELADDLREYLEEYRDMGKFTSLVVFFEPPEKELSEEEYEELFWDVLQYLHDRDPKPWPE 105 (219)
T ss_pred CeEEEEeCCCCChhhHHHHHHHHHHHHHHhhcccccceEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCcCCCc
Confidence 467889999999999999999999988554333 368888887767788899999999999887 345665
No 167
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=23.72 E-value=4e+02 Score=25.14 Aligned_cols=61 Identities=26% Similarity=0.357 Sum_probs=49.9
Q ss_pred eeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHH-cCCCCCC
Q psy2381 7 RFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKW-LGLNYDE 71 (350)
Q Consensus 7 RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~w-lGl~~de 71 (350)
++.|-+.| -|++.-.+|++....|+-.+-.+| -.|+..|-.|++...+++.|.. +|++-|-
T Consensus 145 ~~~~~~~G--~I~G~~g~ll~e~~~r~i~a~~ll--~et~~~~PDP~AAa~vve~lnk~~~l~V~t 206 (244)
T COG1938 145 GAEPLEEG--TIVGPSGALLNECLKRGIPALVLL--AETFGDRPDPRAAARVVEALNKMLGLNVDT 206 (244)
T ss_pred CCCccccc--eeecccHHHHHHHHHcCCCeEEEe--ccccCCCCChHHHHHHHHHHHHHhcCccCH
Confidence 36677888 889999999999999999998887 5666667789999999998865 6877664
No 168
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=23.51 E-value=6e+02 Score=24.43 Aligned_cols=96 Identities=16% Similarity=0.243 Sum_probs=51.9
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecC-CHHHH
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTK-RINRY 83 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~-r~~~y 83 (350)
..|..|+.+ ..+ .++..++ +++|-+.+.=+.|.+.. .-....+.+.+.++..|+.--....++.. ....+
T Consensus 114 ~fr~~~~~~---~~~---~a~~~~l--~~~~~~~v~ii~~~~~~-~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~ 184 (389)
T cd06352 114 LTRTLPPAR---KLG---EAVLALL--RWFNWHVAVVVYSDDSE-NCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDL 184 (389)
T ss_pred eeecCCcHH---HHH---HHHHHHH--HHcCceEEEEEEecCCc-cHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhH
Confidence 456665543 233 3445443 34454555544443331 22344567777888888765432223332 14557
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHH
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESF 109 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~ 109 (350)
...++++.+.+.+....+..++....
T Consensus 185 ~~~l~~i~~~~~vii~~~~~~~~~~~ 210 (389)
T cd06352 185 LEILQDIKRRSRIIIMCGSSEDVREL 210 (389)
T ss_pred HHHHHHhhhcceEEEEECCHHHHHHH
Confidence 77788888887665555555555443
No 169
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=23.51 E-value=3.8e+02 Score=26.28 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=57.0
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCe-E--EEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHFNGI-F--ILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~-~--iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
..|..|+.+ +.+.+...+ .+++|-+ + ++.-++.+..+.-....+.+.+.++..|+.-....+..+ -..
T Consensus 120 ~~R~~p~~~---~~~~a~~~~-----~~~~~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~-~~~ 190 (405)
T cd06385 120 ITRTGPTHK---KLGEFVLHI-----HQHFGWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVDLVFEED-DLI 190 (405)
T ss_pred eEEecCchH---HHHHHHHHH-----HHhCCCeEEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEEeeccCC-chh
Confidence 446666553 344443332 3455654 2 233333333232122356778888888886543222211 145
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHH
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQ 113 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~ 113 (350)
.+...+++|.+.+.+..+.|+.++....-.++
T Consensus 191 d~~~~l~~ik~~~~iii~~~~~~~~~~i~~~a 222 (405)
T cd06385 191 NYTTLLQDIKQKGRVIYVCCSPDIFRRLMLQF 222 (405)
T ss_pred hHHHHHHHHhhcceEEEEeCCHHHHHHHHHHH
Confidence 68888999999999999999888776554333
No 170
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=21.96 E-value=55 Score=29.22 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=31.9
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCccc------ccHHHHHHHHHHHHHcCCCC
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINR------STLSATQTIIDGMKWLGLNY 69 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r------~~~~~~~~i~~dL~wlGl~~ 69 (350)
+++||.| +|.||+...- +.+.+ -...++=|--.+..+ ...+-...|.+.|+-.|++-
T Consensus 8 ~~GRFqP-----~H~GHl~vi~--~al~~--vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~ 70 (172)
T COG1056 8 YFGRFQP-----LHTGHLYVIK--RALSK--VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL 70 (172)
T ss_pred EEeccCC-----ccHhHHHHHH--HHHHh--CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCc
Confidence 6899998 8999987643 44433 344444332222111 12334456666777667653
No 171
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=21.64 E-value=1.6e+02 Score=24.20 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHH
Q psy2381 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEI 106 (350)
Q Consensus 61 dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l 106 (350)
=++.|||.+|. ..-+..|+.+.+.+.+.|.+-..+.+- -+.+++
T Consensus 17 Ff~ff~v~YDp-~vvnV~RLHILkrf~qyl~~~~~~~~~-~~e~~~ 60 (105)
T PRK14102 17 YFQFFELPYDP-TVVNVNRLHILKQFSQLIAEIDANFPD-LSEEEK 60 (105)
T ss_pred HHHHhCCCCCc-chhhHHHHHHHHHHHHHHHHhccccCC-CCHHHH
Confidence 36788999997 567999999999999999863444443 244444
No 172
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=20.49 E-value=3.6e+02 Score=19.82 Aligned_cols=60 Identities=20% Similarity=0.388 Sum_probs=30.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHh--hcCCHHHHHHH
Q psy2381 252 IMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYI--KSYDDKKLLNL 328 (350)
Q Consensus 252 l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i--~~~~~~~~~~~ 328 (350)
+..++.+|++|..+.+|...+. .+++++. .+.+..++.+.+..+=.... +.+++..+...
T Consensus 6 ~~~l~~~~~s~~Ti~~Y~~~l~------------~f~~~~~-----~~~~~~it~~~i~~y~~~l~~~~~~s~~T~~~~ 67 (85)
T PF13495_consen 6 LEYLRLKGLSEKTIKNYRYHLK------------RFLRFLG-----NKPPDEITPEDIEQYLNYLQNERGLSPSTINQY 67 (85)
T ss_dssp HHHHHHTT--HHHHHHHHHHHH------------HHHTTSS-----S--GGG--HHHHHHHHHHHHTTT---HHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH------------HHHHHcc-----cCccchhHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3567778999999999887543 4555444 23555666666665544444 34555554443
No 173
>PRK00114 hslO Hsp33-like chaperonin; Reviewed
Probab=20.27 E-value=48 Score=31.95 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.1
Q ss_pred HHHHCCceeccCCCHHHHHHH
Q psy2381 89 YLLSNDYAYYCYSSVEEIESF 109 (350)
Q Consensus 89 ~L~~~G~aY~C~cs~~~l~~~ 109 (350)
.|-.+-..|.|.||++.+...
T Consensus 228 il~~~~v~f~C~CS~er~~~~ 248 (293)
T PRK00114 228 ILEPQPVEFKCDCSRERSANA 248 (293)
T ss_pred eccCccCceeCCCCHHHHHHH
Confidence 344566889999999988654
No 174
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=20.06 E-value=1.7e+02 Score=23.04 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=41.5
Q ss_pred CCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceec
Q psy2381 35 NGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 35 ~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
...++|-|||-. ......+++.|+..|+.-. .+..+...+.+.+.+++|.++|+--.
T Consensus 5 ~~~v~ltfDdg~-----~~~~~~~~~~l~~~~i~at--~fv~~~~~~~~~~~l~~l~~~G~ei~ 61 (123)
T PF01522_consen 5 KKSVALTFDDGY-----RDNYDRLLPLLKKYGIPAT--FFVIGSWVERYPDQLRELAAAGHEIG 61 (123)
T ss_dssp SSEEEEEEESHC-----HTHHHHHHHHHHHTT--EE--EEE-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred CCEEEEEEecCc-----hhhHHHHHHHHHhccccee--eeecccccccccccchhHHHHHHHHH
Confidence 456788999986 5688999999999998744 24455567888899999999995544
Done!