Query psy2381
Match_columns 350
No_of_seqs 198 out of 1796
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g6z_A Glutamate-tRNA ligase; 100.0 2E-107 6E-112 821.7 34.1 334 2-337 24-358 (490)
2 4gri_A Glutamate--tRNA ligase; 100.0 2E-105 5E-110 817.4 32.3 335 1-337 22-368 (512)
3 2ja2_A Glutamyl-tRNA synthetas 100.0 3E-103 1E-107 794.0 29.7 331 3-337 6-352 (498)
4 2cfo_A Glutamyl-tRNA synthetas 100.0 2E-102 6E-107 789.1 32.8 333 3-337 1-343 (492)
5 1j09_A Glutamyl-tRNA synthetas 100.0 3E-101 1E-105 776.3 30.4 327 3-337 1-339 (468)
6 3afh_A Glutamyl-tRNA synthetas 100.0 9.6E-99 3E-103 760.9 23.8 318 2-337 24-349 (488)
7 2o5r_A Glutamyl-tRNA synthetas 100.0 3E-94 1E-98 728.3 28.0 331 4-337 14-357 (481)
8 3al0_C Glutamyl-tRNA(Gln) amid 100.0 2.2E-94 7.5E-99 743.7 19.6 317 3-337 129-453 (592)
9 1nzj_A Hypothetical protein YA 100.0 2.6E-86 8.9E-91 633.5 21.6 279 2-302 4-288 (298)
10 1qtq_A GLNRS, protein (glutami 100.0 5.4E-81 1.8E-85 634.3 14.5 308 2-331 25-380 (553)
11 3aii_A Glutamyl-tRNA synthetas 100.0 7.4E-77 2.5E-81 603.9 22.2 274 2-323 95-403 (553)
12 2hz7_A Glutaminyl-tRNA synthet 100.0 2.3E-77 7.9E-82 630.3 13.5 291 2-314 65-396 (851)
13 1irx_A Lysyl-tRNA synthetase; 100.0 4.8E-42 1.6E-46 351.2 -1.3 297 6-332 24-371 (523)
14 1li5_A Cysrs, cysteinyl-tRNA s 99.9 2.1E-26 7.2E-31 232.0 16.1 237 9-289 29-311 (461)
15 3tqo_A Cysteinyl-tRNA syntheta 99.9 7.2E-26 2.5E-30 227.3 16.7 226 9-275 32-302 (462)
16 1iq0_A Arginyl-tRNA synthetase 99.9 2.2E-24 7.4E-29 223.5 16.8 248 9-314 111-467 (592)
17 2csx_A Methionyl-tRNA syntheta 99.9 1.6E-24 5.3E-29 220.0 15.1 261 4-289 8-341 (497)
18 2d5b_A Methionyl-tRNA syntheta 99.9 1.5E-23 5E-28 212.8 12.6 262 4-289 6-343 (500)
19 3sp1_A Cysteinyl-tRNA syntheta 99.9 1E-22 3.4E-27 205.7 15.6 226 9-275 49-333 (501)
20 2dlc_X Tyrosyl-tRNA synthetase 99.9 1.3E-22 4.4E-27 200.5 14.5 198 4-272 42-253 (394)
21 3c8z_A Cysteinyl-tRNA syntheta 99.9 1.8E-22 6.2E-27 200.8 13.9 244 8-289 45-337 (414)
22 3fnr_A Arginyl-tRNA synthetase 99.8 2.8E-20 9.5E-25 187.2 15.4 208 3-271 31-314 (464)
23 1n3l_A Tyrosyl-tRNA synthetase 99.8 5E-19 1.7E-23 173.6 14.5 255 3-330 37-314 (372)
24 1f7u_A Arginyl-tRNA synthetase 99.8 3.2E-19 1.1E-23 184.9 13.6 254 9-336 151-503 (607)
25 4dlp_A Aminoacyl-tRNA syntheta 99.8 3.1E-20 1.1E-24 190.2 4.8 263 4-289 28-367 (536)
26 2cyb_A Tyrosyl-tRNA synthetase 99.8 8.4E-19 2.9E-23 169.0 12.7 257 4-333 35-308 (323)
27 3h99_A Methionyl-tRNA syntheta 99.8 8.8E-18 3E-22 172.8 16.5 275 4-289 21-392 (560)
28 2x1l_A Methionyl-tRNA syntheta 99.7 2.7E-17 9.3E-22 167.8 10.8 258 6-288 17-355 (524)
29 2zue_A Arginyl-tRNA synthetase 99.7 2.8E-16 9.5E-21 163.7 15.1 198 9-259 127-444 (629)
30 3kfl_A Methionyl-tRNA syntheta 99.7 1.4E-16 4.8E-21 164.1 9.2 264 4-289 29-385 (564)
31 1rqg_A Methionyl-tRNA syntheta 99.5 2.3E-13 7.9E-18 143.9 16.5 272 4-289 5-390 (722)
32 3u1f_A Methionyl-tRNA syntheta 99.5 8.8E-14 3E-18 142.2 8.5 94 4-98 12-125 (542)
33 2g36_A Tryptophanyl-tRNA synth 99.4 2.2E-12 7.5E-17 124.9 17.2 234 4-318 13-273 (340)
34 2cya_A Tyrosyl-tRNA synthetase 99.3 9.1E-12 3.1E-16 121.7 12.2 255 4-331 38-332 (364)
35 2el7_A Tryptophanyl-tRNA synth 99.3 1.2E-10 4.2E-15 112.6 16.4 195 4-271 4-219 (337)
36 2zp1_A Tyrosyl-tRNA synthetase 99.2 2.8E-10 9.7E-15 109.0 16.3 247 4-331 31-293 (314)
37 2yy5_A Tryptophanyl-tRNA synth 99.2 5.7E-11 1.9E-15 115.4 11.1 197 11-271 12-229 (348)
38 1yi8_B Tryptophanyl-tRNA synth 99.2 1.1E-10 3.9E-15 113.4 13.0 244 4-329 25-295 (351)
39 1i6k_A TRPRS, tryptophanyl-tRN 99.2 3.6E-10 1.2E-14 108.9 15.0 196 4-271 4-219 (328)
40 3tzl_A Tryptophanyl-tRNA synth 98.9 2.4E-08 8.1E-13 95.9 14.3 235 11-330 11-270 (322)
41 3jxe_A Tryptophanyl-tRNA synth 98.5 1.6E-06 5.4E-11 85.2 16.2 183 11-271 81-278 (392)
42 2ip1_A Tryptophanyl-tRNA synth 98.4 7.6E-06 2.6E-10 81.4 17.0 118 197-331 248-382 (432)
43 2cyc_A Tyrosyl-tRNA synthetase 98.4 2.1E-06 7.2E-11 84.0 12.7 250 11-331 41-345 (375)
44 3hzr_A Tryptophanyl-tRNA synth 98.4 2.7E-06 9.1E-11 83.5 13.3 189 11-273 90-296 (386)
45 1h3f_A Tyrosyl-tRNA synthetase 98.3 1.4E-06 4.8E-11 86.7 10.2 84 182-271 171-256 (432)
46 2jan_A Tyrosyl-tRNA synthetase 98.3 1.5E-06 5E-11 86.5 9.9 127 182-328 167-299 (432)
47 3hv0_A Tryptophanyl-tRNA synth 98.3 1.8E-05 6.2E-10 77.8 16.2 185 11-272 82-292 (393)
48 2v0c_A Aminoacyl-tRNA syntheta 98.3 9.3E-07 3.2E-11 95.3 7.3 91 8-98 40-151 (878)
49 1r6t_A Tryptophanyl-tRNA synth 98.2 2E-05 6.8E-10 79.4 15.6 116 198-330 303-435 (477)
50 2j5b_A Tyrosyl-tRNA synthetase 98.2 6.3E-06 2.2E-10 79.8 11.6 193 11-271 48-257 (348)
51 3a04_A Tryptophanyl-tRNA synth 98.2 0.00011 3.8E-09 71.7 18.7 186 11-271 78-281 (372)
52 4arc_A Leucine--tRNA ligase; l 98.2 1.9E-06 6.6E-11 92.6 6.7 90 8-98 60-171 (880)
53 3tze_A Tryptophanyl-tRNA synth 98.1 7E-05 2.4E-09 73.8 16.5 68 198-271 243-314 (406)
54 1wkb_A Leucyl-tRNA synthetase; 98.1 3.5E-06 1.2E-10 90.1 7.7 94 4-98 37-178 (810)
55 2yxn_A Tyrosyl-tRNA synthetase 98.1 5.1E-07 1.7E-11 86.6 0.9 133 182-334 171-312 (322)
56 3vgj_A Tyrosyl-tRNA synthetase 98.1 0.0001 3.6E-09 71.9 16.4 84 182-271 184-272 (373)
57 2pid_A Tyrosyl-tRNA synthetase 98.0 1E-05 3.5E-10 78.5 8.6 133 182-334 190-331 (356)
58 1jil_A Tyrrs, tyrosyl-tRNA syn 98.0 2E-05 6.8E-10 78.2 10.6 126 183-328 167-298 (420)
59 3foc_A Tryptophanyl-tRNA synth 98.0 7.8E-05 2.7E-09 74.3 14.4 236 11-272 99-359 (451)
60 2ts1_A Tyrosyl-tRNA synthetase 98.0 1.7E-05 5.9E-10 78.6 9.2 127 183-329 166-298 (419)
61 3prh_A Tryptophanyl-tRNA synth 97.9 4.2E-06 1.4E-10 82.1 4.0 88 11-107 43-137 (388)
62 1r6u_A Tryptophanyl-tRNA synth 97.9 7.2E-05 2.4E-09 74.4 12.9 68 198-271 256-327 (437)
63 1ile_A Ilers, isoleucyl-tRNA s 97.9 3.6E-06 1.2E-10 90.1 3.5 90 8-98 45-173 (821)
64 1y42_X Tyrosyl-tRNA synthetase 97.9 4.3E-05 1.5E-09 75.1 9.5 128 182-329 212-361 (392)
65 3i05_A Tryptophanyl-tRNA synth 97.9 6.9E-06 2.4E-10 80.8 3.8 67 199-271 225-294 (395)
66 3p0j_A Tyrosyl-tRNA synthetase 97.8 0.00034 1.2E-08 73.3 16.7 84 182-271 167-255 (690)
67 1ffy_A Isoleucyl-tRNA syntheta 97.8 1.6E-05 5.6E-10 86.0 6.1 92 6-98 53-178 (917)
68 3n9i_A Tryptophanyl-tRNA synth 97.8 8E-06 2.7E-10 79.0 2.5 190 11-271 23-234 (346)
69 1wz2_A Leucyl-tRNA synthetase; 97.8 1.9E-05 6.4E-10 86.0 5.5 74 198-273 603-681 (967)
70 1gax_A Valrs, valyl-tRNA synth 97.7 3.6E-05 1.2E-09 82.7 7.3 92 6-98 39-168 (862)
71 3sz3_A Tryptophanyl-tRNA synth 97.6 1.3E-05 4.4E-10 77.4 0.6 89 11-108 14-109 (341)
72 1ile_A Ilers, isoleucyl-tRNA s 96.7 0.0057 2E-07 65.4 10.0 75 197-273 543-622 (821)
73 1ffy_A Isoleucyl-tRNA syntheta 96.6 0.007 2.4E-07 65.5 10.4 73 197-271 547-624 (917)
74 1wkb_A Leucyl-tRNA synthetase; 95.9 0.012 4.2E-07 62.7 7.2 75 197-273 602-681 (810)
75 1gax_A Valrs, valyl-tRNA synth 95.8 0.024 8.1E-07 61.0 9.4 75 197-273 480-559 (862)
76 1wz2_A Leucyl-tRNA synthetase; 95.8 0.017 5.7E-07 62.9 8.3 93 5-98 38-178 (967)
77 4arc_A Leucine--tRNA ligase; l 94.9 0.012 4.2E-07 63.3 3.4 77 195-273 540-670 (880)
78 2v0c_A Aminoacyl-tRNA syntheta 94.2 0.064 2.2E-06 57.7 6.9 32 241-273 636-668 (878)
79 3p0j_A Tyrosyl-tRNA synthetase 92.9 0.3 1E-05 51.1 9.1 85 6-91 385-484 (690)
80 2f40_A Hypothetical protein PF 29.4 22 0.00074 27.1 1.5 19 33-51 6-24 (96)
81 1z96_A DNA-damage, UBA-domain 26.7 1.1E+02 0.0038 18.6 4.6 23 252-274 8-30 (40)
82 2gwh_A Sulfotransferase 1C2; s 26.4 46 0.0016 30.2 3.6 53 14-71 168-220 (298)
83 1ls6_A ARYL sulfotransferase; 24.8 49 0.0017 29.9 3.4 53 14-71 165-217 (295)
84 2zpt_X Tyrosine-ester sulfotra 24.6 53 0.0018 29.7 3.7 53 14-71 165-217 (295)
85 1aqu_A EST, estrogen sulfotran 24.6 52 0.0018 29.9 3.6 53 14-71 167-219 (297)
86 2reo_A Putative sulfotransfera 22.7 56 0.0019 29.8 3.4 53 14-71 175-227 (305)
87 3bfx_A Sulfotransferase 1C2; P 22.7 54 0.0018 29.7 3.3 53 14-71 166-218 (296)
88 1q20_A SULT2B1B, sulfotransfer 22.4 41 0.0014 30.6 2.4 53 14-71 169-221 (299)
89 1i27_A Transcription factor II 22.3 2.3E+02 0.0079 20.6 6.2 27 258-292 8-34 (73)
90 1q1q_A SULT2B1A, sulfotransfer 22.2 43 0.0015 31.5 2.6 53 14-71 167-219 (350)
91 2lnd_A De novo designed protei 20.8 53 0.0018 24.6 2.2 23 316-338 82-104 (112)
No 1
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=1.7e-107 Score=821.71 Aligned_cols=334 Identities=55% Similarity=1.040 Sum_probs=304.9
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+|||||+||||+||++||++||+|+|||||||++|++++|++.|+++|+||||+||++||+||+|++
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~ 103 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMD 103 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHH
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-CCCCCCceEEEeCCCCCceeEEee
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-IPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~-~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
.|++++++|+++|+||+||||+++|++.|+.+...+.+++|+|+||++ +.++.+ ...|.++++|||+|.++.+.|+|.
T Consensus 104 ~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~-~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~ 182 (490)
T 4g6z_A 104 RYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPE-PGKVLPEPPAGVAPVLRFRNPLTGTVAWDDA 182 (490)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCC-TTCCCCCCCTTCCCEEEECCCCSSEEEEEET
T ss_pred HHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccC-ChhhhhhhhcCCCceEEEecCCCCcEEEEEe
Confidence 999999999999999999999999999988877777788999999999 866533 256889999999997789999999
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g 240 (350)
++|++++++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|.|+|+|+|++.+|
T Consensus 183 i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g 262 (490)
T 4g6z_A 183 VKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG 262 (490)
T ss_dssp TTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS
T ss_pred eeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcC
Q psy2381 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSY 320 (350)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~ 320 (350)
+|||||+|+++|.+|+++|++|+||+|||++|||++++.|++|++||+++|+ +++++++|++||++||.|+|++||+.+
T Consensus 263 ~KLSKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~F~-~~~~~~~~~~fd~~KL~~~N~~~i~~~ 341 (490)
T 4g6z_A 263 EKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEWFD-LEHLGKSPAQYDHNKLNWLNNHYIKEA 341 (490)
T ss_dssp SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHHCC-GGGBCSSCEECCHHHHHHHHHHHHHHS
T ss_pred CcccCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhhCC-HhhCCCCCCccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998899999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhch
Q psy2381 321 DDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (350)
++++|.+++.||+.+.+
T Consensus 342 ~~~~l~~~~~~~l~~~~ 358 (490)
T 4g6z_A 342 DDARLAGLAKPFFAALG 358 (490)
T ss_dssp CHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999998654
No 2
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=1.6e-105 Score=817.36 Aligned_cols=335 Identities=41% Similarity=0.756 Sum_probs=317.6
Q ss_pred CCcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC--------
Q psy2381 1 MTIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG-------- 72 (350)
Q Consensus 1 m~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~-------- 72 (350)
|..|||||||||||+||||||||||+||++||++||+|+|||||||++|++++|++.|+++|+||||+|||+
T Consensus 22 ~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~ 101 (512)
T 4gri_A 22 MLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYA 101 (512)
T ss_dssp --CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCC
Confidence 346999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCC
Q psy2381 73 PFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNP 150 (350)
Q Consensus 73 ~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~ 150 (350)
||+||+|++.|++++++|+++|+||+||||++++++.|+.+...+.++.|+++||++ +.+|.. ...+.++++|||+|
T Consensus 102 py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~R~k~~ 180 (512)
T 4gri_A 102 PYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNL-SNEEVENALIKKIKPVVRFKIP 180 (512)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTC-CHHHHHHHHHTTCCCEEEECCC
T ss_pred CccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhccc-chhhhhhhhhhhccceeeeccc
Confidence 579999999999999999999999999999999999999888888899999999998 766533 24678899999999
Q ss_pred CCCceeEEeeeeeeeecCCCC-CCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCce
Q psy2381 151 LYGNITWNDLIKGKITISNKE-LDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFY 229 (350)
Q Consensus 151 ~~~~~~~~D~v~G~~~~~~~~-~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y 229 (350)
.++.+.|+|.++|++.+.+.. .+||||+|+||+|||||||||||++|||||||||+||++|||+|++||++|||++|.|
T Consensus 181 ~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y 260 (512)
T 4gri_A 181 LEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIY 260 (512)
T ss_dssp SSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred ccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeE
Confidence 888999999999999987654 4799999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhccccCCCCCCCCcccHHH
Q psy2381 230 GHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNLKK 308 (350)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~-~~~~~~~el~~~f~~~~~i~~~~~~~d~~k 308 (350)
+|+|++++.+|+|||||+|+.+|++|++.||.||||+|||++||||+++ .|++|++||+++|+ +++++++|++||++|
T Consensus 261 ~H~pli~~~~g~kLSKR~~~~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~Fd-l~~v~ks~a~fD~~K 339 (512)
T 4gri_A 261 CHLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQFFS-IEKINKSPAIFDYHK 339 (512)
T ss_dssp EEECCCBCTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHHCC-GGGBCSSCCBCCHHH
T ss_pred EecchhccccccccCcccccccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHHHH-hcCCCCCCccccHHH
Confidence 9999999999999999999999999999999999999999999999865 79999999999999 999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhch
Q psy2381 309 LEWLNNFYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 309 L~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
|.|+|++||+.++.+++.+.+.||+.+.+
T Consensus 340 L~~~N~~~i~~~~~~~l~~~~~~~l~~~~ 368 (512)
T 4gri_A 340 LDFFNSYYIREKKDEDLFNLLLPFFQKKG 368 (512)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999997654
No 3
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=3.2e-103 Score=794.04 Aligned_cols=331 Identities=37% Similarity=0.686 Sum_probs=316.2
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC--------CCe
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE--------GPF 74 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de--------~~~ 74 (350)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||+ +||
T Consensus 6 ~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~ 85 (498)
T 2ja2_A 6 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPY 85 (498)
T ss_dssp CCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred CeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCe
Confidence 499999999999999999999999999999999999999999999999999999999999999999999 589
Q ss_pred eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCC
Q psy2381 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLY 152 (350)
Q Consensus 75 ~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~ 152 (350)
+||+|+++|++++++|+++|+||+||||+++|++.| .+...+.+++|+|+||++ +++|.. ..+|.++++|||+| +
T Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r-~~~~~~~~~~Y~~~cr~l-~~~e~~~~~~~g~~~~iR~k~~-~ 162 (498)
T 2ja2_A 86 RQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH-VAAGRNPKLGYDNFDRHL-TDAQRAAYLAEGRQPVVRLRMP-D 162 (498)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHH-HHTTCCTTSCCCCGGGGC-CHHHHHHHHHTTCCCEEEECCC-S
T ss_pred eeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHH-HHHhcCCCCCCCCccccC-CHHHHHhhhccCCCceEEEECC-C
Confidence 999999999999999999999999999999999988 666677788999999999 877633 24688899999999 6
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHh-----CCCCC
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL-----GVTLP 227 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aL-----g~~~P 227 (350)
+.+.|+|.++|++.+++..++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++| ||++|
T Consensus 163 ~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P 242 (498)
T 2ja2_A 163 DDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAERIP 242 (498)
T ss_dssp SCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCC
T ss_pred CceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCC
Confidence 7899999999999999889999999999999999999999999999999999999999999999999999 99999
Q ss_pred ceEeeceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccccCCCCCCCCcccH
Q psy2381 228 FYGHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYLSKSPAQFNL 306 (350)
Q Consensus 228 ~y~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~~~~i~~~~~~~d~ 306 (350)
.|+|+|+++|.+|+|||||+|+.+|++++++|++|+||+|||++|||+++ +.+++|++||+++|+ ++++++++++||+
T Consensus 243 ~~~h~plil~~~g~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli~~f~-~~~~~~~~a~fd~ 321 (498)
T 2ja2_A 243 KFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAFD-VADVNSSPARFDQ 321 (498)
T ss_dssp EEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHHHHCC-GGGCCCSCEECCH
T ss_pred eEEEeeeeECCCCCcccccCCcccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHhhCC-hhhcCccccccCH
Confidence 99999999999999999999999999999999999999999999999974 468999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhch
Q psy2381 307 KKLEWLNNFYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 307 ~kL~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
+||.|+|++||+.++++++.+++.|++.+.+
T Consensus 322 ~kL~~~N~~~i~~~~~~~l~~~l~~~l~~~~ 352 (498)
T 2ja2_A 322 KKADALNAEHIRMLDVGDFTVRLRDHLDTHG 352 (498)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHhcCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999997654
No 4
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=1.9e-102 Score=789.13 Aligned_cols=333 Identities=44% Similarity=0.798 Sum_probs=318.6
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHH
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINR 82 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~ 82 (350)
+|||||||||||+|||||+||||+||++||++||+|+|||||||++|++++|++.|+++|+||||+||++||+||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCCCceeEEee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
|++++++|+++|+||+||||+++|++.|+.+...|.++.|+|+||++ +.+|.. ..+|.++++|||+|.++.+.|+|.
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~l-s~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHL-TPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL 159 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTC-CHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccC-CHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence 99999999999999999999999999998888778888999999999 876532 245788999999997789999999
Q ss_pred eeeeeecCCCCC-CCeEEEecC-----CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeece
Q psy2381 161 IKGKITISNKEL-DDLVIVRAD-----GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (350)
Q Consensus 161 v~G~~~~~~~~~-~D~Vl~R~d-----G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pl 234 (350)
++|++++++.++ +||||+|+| |+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+|+
T Consensus 160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~pl 239 (492)
T 2cfo_A 160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPL 239 (492)
T ss_dssp TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeee
Confidence 999999998888 999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCC--CCccccCHHHHHHhccccCCCCCCCCcccHHHHHHH
Q psy2381 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH--GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWL 312 (350)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~--~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~ 312 (350)
+++.+|+|||||+|+++|++++++||+|+||+|||+.|||++ +..+++|+++|+++|+ ++++++++++||++||.|+
T Consensus 240 il~~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~f~-~~~i~~~~~~~d~~kl~~~ 318 (492)
T 2cfo_A 240 ILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFS-FERINKAGARFDWDKLNWL 318 (492)
T ss_dssp EECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHCC-STTBCSSCEECCHHHHHHH
T ss_pred EECCCCCEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhhcC-hhhcCccccccCHHHHHHH
Confidence 999999999999999999999999999999999999999996 3468999999999999 9999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhch
Q psy2381 313 NNFYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 313 n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
|++||+.++++++.+++.||+.+.+
T Consensus 319 N~~~i~~~~~~~l~~~~~~~l~~~g 343 (492)
T 2cfo_A 319 NRQYIQQLEPEEFLAELIPLWQGAG 343 (492)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998754
No 5
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=2.9e-101 Score=776.27 Aligned_cols=327 Identities=37% Similarity=0.655 Sum_probs=311.6
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCC--------e
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGP--------F 74 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~--------~ 74 (350)
+|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||++| |
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 48999999999999999999999999999999999999999999999999999999999999999999975 9
Q ss_pred eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CCCCCCceEEEeCCCC
Q psy2381 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS--IPINRKPVIRFKNPLY 152 (350)
Q Consensus 75 ~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~--~~~~~~~~~R~k~~~~ 152 (350)
+||+|++.|++++++|+++|+||+||||+++|++.|+.+. .|+|+||++ +.+|.. ..+|.++++|||+|.+
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~------~y~~~cr~l-~~~e~~~~~~~g~~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG------GYDGRARNI-PPEEAEERARRGEPHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHS------SCCCGGGGS-CHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcC------CCCCcccCC-CHHHHHHHHhcCCCceEEEecCCC
Confidence 9999999999999999999999999999999998887531 799999999 877632 2457889999999987
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEee
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHL 232 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~ 232 (350)
+.+.|+|.++|++++++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++|+++|||++|.|+|+
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~ 233 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHM 233 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred CceEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEe
Confidence 89999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHHHHHHhccccCCCCCCCCcccHHHHHH
Q psy2381 233 PMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEW 311 (350)
Q Consensus 233 pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~-~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~ 311 (350)
|+++|.+|+|||||+|+.+|++++++|++|+||+|||+.|||++++ .+++|++||+++|+ ++++++++++||++||.|
T Consensus 234 ~li~~~~g~klSKR~g~~~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~f~-~~~~~~~~~~~d~~kl~~ 312 (468)
T 1j09_A 234 PLLRNPDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFT-WERVSLGGPVFDLEKLRW 312 (468)
T ss_dssp CCCBCTTSCBCCTTTSCCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCC-GGGCCCSCCBCCHHHHHH
T ss_pred eeeeCCCCCccccccchhhHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhhCC-hhhcCccccccChHHhhh
Confidence 9999999999999999999999999999999999999999999754 48999999999999 999999999999999999
Q ss_pred HHHHHhhc-CCHHHHHHHHHHHHHhch
Q psy2381 312 LNNFYIKS-YDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 312 ~n~~~i~~-~~~~~~~~~~~~~~~~~~ 337 (350)
+|++||+. ++++++.+++.||+.+.+
T Consensus 313 ~N~~~i~~~~~~~~l~~~~~~~~~~~~ 339 (468)
T 1j09_A 313 MNGKYIREVLSLEEVAERVKPFLREAG 339 (468)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred hcHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence 99999999 999999999999998765
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=9.6e-99 Score=760.87 Aligned_cols=318 Identities=39% Similarity=0.702 Sum_probs=301.5
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC--------C
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------P 73 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~--------~ 73 (350)
++|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+++++++.|+++|+||||+||++ |
T Consensus 24 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp 103 (488)
T 3afh_A 24 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 103 (488)
T ss_dssp -CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999995 5
Q ss_pred eeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q psy2381 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYG 153 (350)
Q Consensus 74 ~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~ 153 (350)
|+||+|++.|++++++|+++|+||+||||+++|++. .++.|+|+|... .+|.++++|||+| ++
T Consensus 104 ~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~--------~~~~Y~~~~~~~--------~~G~~~~iR~k~~-~~ 166 (488)
T 3afh_A 104 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPHEYK--------EKGHPVTIKFKVL-PG 166 (488)
T ss_dssp CBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSE--------EEEESSCCHHHH--------HTTCCEEEEECCC-SS
T ss_pred eeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhh--------cCCCCCchhhHH--------hcCCCceEEEECC-CC
Confidence 999999999999999999999999999999999643 245899986432 2467889999999 68
Q ss_pred ceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeec
Q psy2381 154 NITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLP 233 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~p 233 (350)
.+.|+|.++|.+.+++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+|
T Consensus 167 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~p 246 (488)
T 3afh_A 167 KTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIP 246 (488)
T ss_dssp EEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEEC
T ss_pred ceeEEeccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEe
Confidence 89999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHH
Q psy2381 234 MVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLN 313 (350)
Q Consensus 234 ll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n 313 (350)
+++|.+|+|||||+|+++|++++++|++||||+|||+.|||++++.+++|++||+++|+ ++++++++++||++||.|+|
T Consensus 247 li~~~~g~KLSKR~g~~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~i~~f~-~~~i~~~~~~fd~~kl~~~N 325 (488)
T 3afh_A 247 LILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFD-PKDISNKGVIFDYQKLEWVN 325 (488)
T ss_dssp CEECTTSSBCCTTTSCCBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHHGGGCC-GGGSCSSCEECCHHHHHHHH
T ss_pred eeeCCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCC-hhhcCccccccChHHhhhcc
Confidence 99999999999999999999999999999999999999999975459999999999999 99999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhch
Q psy2381 314 NFYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
++||+.++++++.+++.|++.+.+
T Consensus 326 ~~~i~~~~~~~l~~~l~~~l~~~g 349 (488)
T 3afh_A 326 GKHMRRIDLEDLKREFIEWAKYAG 349 (488)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999998765
No 7
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=3e-94 Score=728.31 Aligned_cols=331 Identities=41% Similarity=0.746 Sum_probs=315.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC--------Cee
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------PFY 75 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~--------~~~ 75 (350)
|++||||||||+|||||+||||+||++||.+||+|+|||||||++|+++++++.|+++|+|||++||++ ||+
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~ 93 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee
Confidence 799999999999999999999999999999999999999999999999999999999999999999984 599
Q ss_pred ecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCC--CCCCCCCCCCC--CCCCCCceEEEeCCC
Q psy2381 76 QTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRI--WRPEPGKILPS--IPINRKPVIRFKNPL 151 (350)
Q Consensus 76 QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~--cr~l~~~ee~~--~~~~~~~~~R~k~~~ 151 (350)
||+|++.|++++++|+++|+||+|+||++++++.|+.+...+.++.|+|+ ||++ +.+|.. ...|.++++|||+|.
T Consensus 94 QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l-~~~e~~~~~~~G~~~~iR~k~~~ 172 (481)
T 2o5r_A 94 QSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFD-TPERRREYEEKGLRPAVFFKMPR 172 (481)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTC-CHHHHHHHHHTTCCCEEEECCCS
T ss_pred eeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcC-CHHHHHHHHhcCCcceEEEEcCC
Confidence 99999999999999999999999999999999999887777778899999 9999 765422 135778999999986
Q ss_pred CCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEe
Q psy2381 152 YGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGH 231 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H 231 (350)
+.+.|+|.++|.+.+++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++++++|||++|.|+|
T Consensus 173 -~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H 251 (481)
T 2o5r_A 173 -KDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAH 251 (481)
T ss_dssp -SCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred -CceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCC-CCccccCHHHHHHhccccCCCCCCCCcccHHHHH
Q psy2381 232 LPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSH-GNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLE 310 (350)
Q Consensus 232 ~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~-~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~ 310 (350)
+|++++.+|+|||||+|+++|++++++|++|+||++|++.|||++ ++.++++++++++.|+ ++++++++++||++||.
T Consensus 252 ~plil~~~G~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~e~i~~f~-l~~~~~~~~~fd~~kl~ 330 (481)
T 2o5r_A 252 VSTILGPDGKKLSKRHGATSVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLEELISSFS-LDRLSPNPAIFDPQKLK 330 (481)
T ss_dssp ECCEECTTSSBCCGGGSCCBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHHHHHHHCC-GGGBCSSCEECCHHHHH
T ss_pred EeeEECCCCCcccCcCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHHhCC-hhhCCccCcccChHHhh
Confidence 999999999999999999999999999999999999999999997 5678999999999999 99999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhch
Q psy2381 311 WLNNFYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 311 ~~n~~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
|+|++||+.++++++.+++.||+.+.+
T Consensus 331 ~~n~~~i~~~~~~~l~~~~~~~l~~~~ 357 (481)
T 2o5r_A 331 WMNGYYLRNMPIEKLAELAKPFFEKAG 357 (481)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hhCHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998764
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-94 Score=743.69 Aligned_cols=317 Identities=39% Similarity=0.704 Sum_probs=301.4
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCC--------Ce
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEG--------PF 74 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~--------~~ 74 (350)
+|+|||||||||+|||||+||||+||++||++||+|+|||||||++|+.+++++.|+++|+||||+||++ ||
T Consensus 129 ~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp~ 208 (592)
T 3al0_C 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPY 208 (592)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCe
Confidence 5899999999999999999999999999999999999999999999999999999999999999999995 69
Q ss_pred eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q psy2381 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGN 154 (350)
Q Consensus 75 ~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~ 154 (350)
+||+|++.|++++++|+++|+||+||||+++|++. .++.|+|+|... ..|.++++|||+| ++.
T Consensus 209 ~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~--------~~~~Y~~~~~~~--------~~g~~~~iR~k~~-~~~ 271 (592)
T 3al0_C 209 RQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKE--------LFTTYEYPHEYK--------EKGHPVTIKFKVL-PGK 271 (592)
T ss_dssp BSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEE--------CCCCSSCCHHHH--------HTTCCEEEEECCC-SSC
T ss_pred eeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhh--------cCCCCCcHHHHh--------hcCCCceEEEECC-CCC
Confidence 99999999999999999999999999999999543 356899986432 2467889999999 678
Q ss_pred eeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeece
Q psy2381 155 ITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPM 234 (350)
Q Consensus 155 ~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pl 234 (350)
+.|+|.++|.+.+++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||++|||++|.|+|+|+
T Consensus 272 ~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpl 351 (592)
T 3al0_C 272 TSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPL 351 (592)
T ss_dssp CEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECC
T ss_pred ceeeecccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHH
Q psy2381 235 VIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNN 314 (350)
Q Consensus 235 l~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~ 314 (350)
+++.+|+|||||+|+.+|++|+++|++|+||+|||++|||++++.+++|+++|+++|+ ++++++++++||++||.|+|+
T Consensus 352 i~~~~g~KLSKR~g~~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s~~e~i~~f~-~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 352 ILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFD-PKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp CBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCC-TTSBCSSCCBCCHHHHHHHHH
T ss_pred eeCCCCCcccccCCcccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCC-hhhcCcccceeCHHHHhhhhH
Confidence 9999999999999999999999999999999999999999975558999999999999 999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHhch
Q psy2381 315 FYIKSYDDKKLLNLIQPIIKKKK 337 (350)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~~~~~~ 337 (350)
+||+.+++++|.+++.||+.+.+
T Consensus 431 ~~i~~~~~~~l~~~~~~~~~~~~ 453 (592)
T 3al0_C 431 KHMRRIDLEDLKREFIEWAKYAG 453 (592)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999998765
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=2.6e-86 Score=633.49 Aligned_cols=279 Identities=29% Similarity=0.458 Sum_probs=245.8
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+|||||+||||+||++||+++|+|+|||||||++|+++++++.|++||+||||+||+++++||+|++
T Consensus 4 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~ 83 (298)
T 1nzj_A 4 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHD 83 (298)
T ss_dssp CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHH
T ss_pred CCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeee
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v 161 (350)
.|++++++|+++|+||+|+||+++|++. + ..|+|+||++ +.+ |.++++|||++. +.+.|.|++
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~-------~--~~Y~g~cr~~-~~~------g~~~~~R~r~~~-~~~~f~D~~ 146 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSI-------G--GIYDGHCRVL-HHG------PDNAAVRIRQQH-PVTQFTDQL 146 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHT-------T--SSCCCTTTTT-CCC------STTCEEEECCSS-CCCEEEETT
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHc-------C--CCCCCccccC-CcC------CCCCcEEEecCC-cccceehhh
Confidence 9999999999999999999999999643 2 2799999998 653 567899999985 688999999
Q ss_pred eeeeecCC-CCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC
Q psy2381 162 KGKITISN-KELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 162 ~G~~~~~~-~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g 240 (350)
+|.+.++. .+++||||+|+||+|||||||||||++|||||||||+||++|||+|++||++||++.|.|+|+|++++.+|
T Consensus 147 ~G~~~~~~~~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g 226 (298)
T 1nzj_A 147 RGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG 226 (298)
T ss_dssp TEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---
T ss_pred CcccccCcccCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC
Confidence 99998775 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCCC-ccccCHH----HHHHhccccCCCCCCCC
Q psy2381 241 VKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHGN-EEIFSIK----QFCYWFNDCKYLSKSPA 302 (350)
Q Consensus 241 ~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~~-~~~~~~~----el~~~f~~~~~i~~~~~ 302 (350)
+|||||+|+.+|++++ ..+++.++|.+|||+++. .+++|++ +++++|+ ++++++++.
T Consensus 227 ~KLSKR~g~~~v~~~~----~~~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~~~~f~-~~~~~~~~~ 288 (298)
T 1nzj_A 227 AKLSKQNHAPALPKGD----PRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWR-LTAVPESAI 288 (298)
T ss_dssp ----------CCCSSC----CHHHHHHHHHHTTCCCCSCGGGSCHHHHHHHHHHTCC-GGGSCCCSB
T ss_pred CcccccCCccChhcCC----ccHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHhCC-HhhCCCCCC
Confidence 9999999999998764 456799999999999754 5789977 5788999 999999985
No 10
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=5.4e-81 Score=634.25 Aligned_cols=308 Identities=21% Similarity=0.309 Sum_probs=266.6
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|++.|++||+||||.||+++++||+|++
T Consensus 25 ~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~wde~~~~qSer~~ 104 (553)
T 1qtq_A 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFD 104 (553)
T ss_dssp SSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSSSCEEGGGGHH
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCCCCCCCeehcccHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-----CCC----CCCceEEEeCCCC
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----IPI----NRKPVIRFKNPLY 152 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~-----~~~----~~~~~~R~k~~~~ 152 (350)
.|+++|++|+++|+||+||||+++|++.|+.+ ..+.|+++||++ +++|.. ..+ +.++++|+|++.
T Consensus 105 ~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~----~~~g~~~~~R~~-s~ee~~~~fe~m~~G~~~~g~~~lR~kid~- 178 (553)
T 1qtq_A 105 QLHAYAIELINKGLAYVDELTPEQIREYRGTL----TQPGKNSPYRDR-SVEENLALFEKMRAGGFEEGKACLRAKIDM- 178 (553)
T ss_dssp HHHHHHHHHHHTTSEEEECCCHHHHHHHHCCS----SSCCCCCTTTTC-CHHHHHHHHHHHHTTCSCTTSCEEEECSCT-
T ss_pred HHHHHHHHHHHCCCceecCCCHHHHHHHhccc----ccCCCCCccccC-chhhhHhHHHHHhCCCccCCceEEEEeccc-
Confidence 99999999999999999999999998876432 245788899999 876411 112 346789998752
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEe---------cC---CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHH
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVR---------AD---GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R---------~d---G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~ 220 (350)
...+..++||||+| +| |+||||||||||||+|||||||||.||++|+|+|.+||+
T Consensus 179 -------------~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~ 245 (553)
T 1qtq_A 179 -------------ASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD 245 (553)
T ss_dssp -------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHH
T ss_pred -------------ccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHH
Confidence 23456789999999 67 599999999999999999999999999999999999999
Q ss_pred HhCCC-CCceEeeceeecCCCceeccCCC----------------CCCHHHHHHcCCCHHHHHHHHHHhCCCCCCc--cc
Q psy2381 221 ALGVT-LPFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNE--EI 281 (350)
Q Consensus 221 aLg~~-~P~y~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~peal~~~l~~lG~~~~~~--~~ 281 (350)
+|||+ .|.+.|...+ +.+|+|||||++ .+||++|+++||+|+||++||+++||++++. ++
T Consensus 246 alg~~~~P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~ 324 (553)
T 1qtq_A 246 NITIPVHPRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEM 324 (553)
T ss_dssp TSCCSCCCEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCH
T ss_pred HcCCCCCCCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccch
Confidence 99998 6855555554 678999999995 4689999999999999999999999998554 78
Q ss_pred cCHHHHHHhccccCC-CCCCCCcccHHHHHHHH--H--HHh---hcCCHHHHHHHHHH
Q psy2381 282 FSIKQFCYWFNDCKY-LSKSPAQFNLKKLEWLN--N--FYI---KSYDDKKLLNLIQP 331 (350)
Q Consensus 282 ~~~~el~~~f~~~~~-i~~~~~~~d~~kL~~~n--~--~~i---~~~~~~~~~~~~~~ 331 (350)
++++++++ |+ ++. .++++++||+.||.|+| . +++ +..+.+++..+..|
T Consensus 325 ~~le~~~~-~~-l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g~r~~~ 380 (553)
T 1qtq_A 325 ASLESCIR-ED-LNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVP 380 (553)
T ss_dssp HHHHHHHH-HH-HHHHSCEECEESSEEEEEBTTCCSSCEEEEEESCSSCGGGCEEEEE
T ss_pred hhHHHHHH-hC-cccccccccceeccceEEEEcCCCceEEEEecCCCCChHHhhhhHh
Confidence 89999888 88 999 56999999999999999 3 566 44455555444433
No 11
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.4e-77 Score=603.95 Aligned_cols=274 Identities=31% Similarity=0.485 Sum_probs=234.3
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
++|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|++.|++||+||||.||+ +++||+|++
T Consensus 95 g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~-~~~qSdr~~ 173 (553)
T 3aii_A 95 GEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE-TVIQSDRME 173 (553)
T ss_dssp SCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSE-EEEGGGGHH
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC-CcccccCHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-----CCCCC--CceEEEeCCCCCc
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----IPINR--KPVIRFKNPLYGN 154 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~-----~~~~~--~~~~R~k~~~~~~ 154 (350)
.|++++++|+++|+||+||||++++++.|.. .++|+||++ +.+|.. ...|. .+++|+|.+.
T Consensus 174 ~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~--------g~~~~cR~~-s~ee~l~~f~~m~~G~~g~~~lR~k~d~--- 241 (553)
T 3aii_A 174 TYYEYTEKLIERGGAYVCTCRPEEFRELKNR--------GEACHCRSL-GFRENLQRWREMFEMKEGSAVVRVKTDL--- 241 (553)
T ss_dssp HHHHHHHHHHHTTSEEEECSCHHHHHHHHHT--------TCCCGGGGC-CHHHHHHHHHHGGGSCTTSCEEEECCCT---
T ss_pred HHHHHHHHHHHcCCceeCCCCHHHHHHHhhc--------CCCCccccC-CHHHHHHHHHHHhcCCcCceEEEEEccc---
Confidence 9999999999999999999999999877642 467999999 876411 11232 3789998752
Q ss_pred eeEEeeeeeeeecCCCCCCCeEEEec---------C---CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHh
Q psy2381 155 ITWNDLIKGKITISNKELDDLVIVRA---------D---GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL 222 (350)
Q Consensus 155 ~~~~D~v~G~~~~~~~~~~D~Vl~R~---------d---G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aL 222 (350)
...+.+++||||+|. | |+|||||||+||||+|||||||||.||++|||+|.+|+++|
T Consensus 242 -----------~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~al 310 (553)
T 3aii_A 242 -----------NHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHL 310 (553)
T ss_dssp -----------TCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHH
T ss_pred -----------ccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHc
Confidence 234557899999997 4 69999999999999999999999999999999999999999
Q ss_pred CCCCCceEeeceeecCCCceeccCCC----------------CCCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHH
Q psy2381 223 GVTLPFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQ 286 (350)
Q Consensus 223 g~~~P~y~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~e 286 (350)
|++.|.|+|+|+| +.+|+|||||++ ..|+++|+++|++|+||++||+.+||+.
T Consensus 311 G~~~P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~---------- 379 (553)
T 3aii_A 311 GWEPPEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKI---------- 379 (553)
T ss_dssp TCCCCEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCS----------
T ss_pred CCCCCeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCC----------
Confidence 9999999999998 779999999986 4689999999999999999999999853
Q ss_pred HHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHH
Q psy2381 287 FCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDK 323 (350)
Q Consensus 287 l~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~ 323 (350)
++..|++++|.+.|+++|++.+++
T Consensus 380 -------------~~~~~s~~~L~~~~r~~l~~~a~R 403 (553)
T 3aii_A 380 -------------ADSTMSWKKIYGLNRSILEEEARR 403 (553)
T ss_dssp -------------SCBCCCHHHHHHHHHHHHTTTCEE
T ss_pred -------------ccccccHHHHHHHHHHHhhccChh
Confidence 346789999999999999987654
No 12
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=2.3e-77 Score=630.26 Aligned_cols=291 Identities=25% Similarity=0.350 Sum_probs=253.3
Q ss_pred CcceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCCCCeeecCCHH
Q psy2381 2 TIVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRIN 81 (350)
Q Consensus 2 ~~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~ 81 (350)
+.|+|||||||||+||||||||||+||++||++||+|+|||||||++|+.++|++.|++||+||||.||+++|+||+|++
T Consensus 65 ~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~wde~~~~qSer~d 144 (851)
T 2hz7_A 65 PRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHFYYASDYFD 144 (851)
T ss_dssp SSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTTCEEEGGGGHH
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccHhhhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC-----C----CCCCCceEEEeCCCC
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPS-----I----PINRKPVIRFKNPLY 152 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~-----~----~~~~~~~~R~k~~~~ 152 (350)
.|++++++|+++|+||+||||+++|++.|..+ ..+.|+++||++ +++|.. . ..+.++++|+|++.
T Consensus 145 ~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~----~~~G~~s~~R~l-s~ee~l~~fe~m~~G~~~~g~~vlR~Kid~- 218 (851)
T 2hz7_A 145 RYYAYAEQLIRQGDAYVESVSPEELSRLRGNA----TTPGTPSPYRDR-SVEENLDLLRRMKAGEFADGEHVLRAKIDL- 218 (851)
T ss_dssp HHHHHHHHHHHTTSEEEECSCHHHHHHHHCBT----TBCCCCCTTTTC-CHHHHHHHHHHHHTTCSCTTSCEEEECCCT-
T ss_pred HHHHHHHHHHHCCCcEeecCCHHHHHHHhcch----hccCCCcccccC-CHHHHhhHHHHHhcCCcccCCeeEEEeccc-
Confidence 99999999999999999999999998776432 234678889999 876411 1 12347899999863
Q ss_pred CceeEEeeeeeeeecCCCCCCCeEEEecC------------CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHH
Q psy2381 153 GNITWNDLIKGKITISNKELDDLVIVRAD------------GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILK 220 (350)
Q Consensus 153 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~d------------G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~ 220 (350)
...+.+++||||+|++ |+||||||||||||+|||||||||.||++|||+|.+||+
T Consensus 219 -------------~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~ 285 (851)
T 2hz7_A 219 -------------TAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLME 285 (851)
T ss_dssp -------------TCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHH
T ss_pred -------------cccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHH
Confidence 2335578999999987 699999999999999999999999999999999999999
Q ss_pred HhCCCC-CceEeeceeecCCCceeccCCC----------------CCCHHHHHHcCCCHHHHHHHHHHhCCCCCCc--cc
Q psy2381 221 ALGVTL-PFYGHLPMVIDSNKVKISKRKE----------------ATDIMYYKKKGFLPEAILNYLARLGWSHGNE--EI 281 (350)
Q Consensus 221 aLg~~~-P~y~H~pll~~~~g~KLSKR~g----------------~~~l~~l~~~G~~peal~~~l~~lG~~~~~~--~~ 281 (350)
+|||+. |.+.|...| +.+|+|||||++ ..||++|+++||+|++|++||+++||++.+. ++
T Consensus 286 alG~~~~P~~~~fahL-n~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~ 364 (851)
T 2hz7_A 286 KLNFDPRPHQYEFGRR-GLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDI 364 (851)
T ss_dssp HTTCSSCCEEEEECCE-EETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECH
T ss_pred HcCCCCCCCceEEEEe-cCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccH
Confidence 999986 853333332 348999999995 3689999999999999999999999998654 56
Q ss_pred cCHHHHHHhccccCCC-CCCCCcccHHHHHHHHH
Q psy2381 282 FSIKQFCYWFNDCKYL-SKSPAQFNLKKLEWLNN 314 (350)
Q Consensus 282 ~~~~el~~~f~~~~~i-~~~~~~~d~~kL~~~n~ 314 (350)
.+++.+++ |+ ++.+ ++++++||+.||.|+|-
T Consensus 365 ~~le~~~r-~~-l~~~~~r~~av~d~~Kl~~~N~ 396 (851)
T 2hz7_A 365 AVYENAVR-DD-LNHRAPRVMAVLDPVKVTLTNL 396 (851)
T ss_dssp HHHHHHHH-HH-HHTTCCEECEESSEEEEEETTC
T ss_pred HHHHHHHH-hc-ccccccccceEecceeEEEecC
Confidence 67765554 88 9995 79999999999999984
No 13
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=4.8e-42 Score=351.18 Aligned_cols=297 Identities=17% Similarity=0.188 Sum_probs=201.9
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHH-----HHcCCeEEEEecCCCccccc--------H--------------------
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYA-----RHFNGIFILRIEDTDINRST--------L-------------------- 52 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~A-----r~~~G~~iLRieDtD~~r~~--------~-------------------- 52 (350)
+.-||||||++||||+|+||++|++| ++++|+|++||||||+.|.+ +
T Consensus 24 ~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~~~ 103 (523)
T 1irx_A 24 VESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESY 103 (523)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSSSH
T ss_pred ECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHHHH
Confidence 33399999999999999999997775 56889999999999955544 3
Q ss_pred --HHHHHHHHHHHHcCCCCCCCCeeecC-CHH-HHHHHHHHHHHCC-ceeccCCCHHHHHHHHHHHhhcCCCC--CCCCC
Q psy2381 53 --SATQTIIDGMKWLGLNYDEGPFYQTK-RIN-RYFEIINYLLSND-YAYYCYSSVEEIESFRKKQRSFGEKP--RYNRI 125 (350)
Q Consensus 53 --~~~~~i~~dL~wlGl~~de~~~~QS~-r~~-~y~~~~~~L~~~G-~aY~C~cs~~~l~~~r~~~~~~~~~~--~Y~g~ 125 (350)
.+.+.|+++|+||||.||. ++||+ |.+ .|.+++++|+++| ++|.|++....+.+ ..+...+-.+ .|+..
T Consensus 104 ~~~~~~~~~~~l~~Lgi~~D~--~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~--~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 104 AEHFMRKFEEEVEKLGIEVDL--LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAK--QPPLPENWWPAMVYCPE 179 (523)
T ss_dssp HHHHHHHHHHHHHTTTCCCEE--EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTT--CCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCCceE--EechhhccchHHHHHHHHHHHchHHHHHHHHhhccccc--cccccCCceeccccchh
Confidence 4999999999999999996 69999 999 9999999999999 89988742221100 0011111111 35667
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeee--eecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEE
Q psy2381 126 WRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGK--ITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVI 203 (350)
Q Consensus 126 cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~--~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvI 203 (350)
|+.+ +.+ .... +. ..+||+.. .+...|.|.+.|. +.+.. |+ |+|+|+|+++|| .||++|+.
T Consensus 180 ~~~~-~~~-~~~~-~~-~~~~f~~~-~g~~~~~d~~~G~g~~~w~~----d~------~~~~~~l~~~vd--~~G~Dh~~ 242 (523)
T 1irx_A 180 HRRE-AEI-IEWD-GG-WKVKYKCP-EGHEGWVDIRSGNVKLRWRV----DW------PMRWSHFGVDFE--PAGKDHLV 242 (523)
T ss_dssp TCCE-ECE-EEEC-SS-SCEEECCS-SSCCCEECTTSSCEEECHHH----HH------HHHHHHSCCCBC--CEEHHHHS
T ss_pred hCCc-ccc-cccC-CC-Cceeeeec-CCCccccCCcCCCCCCCCCc----ch------HhhHHHcCCCCc--CCCcCccC
Confidence 7765 422 1111 11 45888884 4677888888443 33311 22 688999998887 77777777
Q ss_pred eC--CCCCCCHHHHHHHHHHhCCCCCceEeeceeecC-CCceeccCCCCC-CHHHHHHcCCCHHHHHHHHHHhCCCCCCc
Q psy2381 204 RG--DDHINNTPRQINILKALGVTLPFYGHLPMVIDS-NKVKISKRKEAT-DIMYYKKKGFLPEAILNYLARLGWSHGNE 279 (350)
Q Consensus 204 RG--~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~-~g~KLSKR~g~~-~l~~l~~~G~~peal~~~l~~lG~~~~~~ 279 (350)
+| .||. .|+++ ++||+++|.|.|++++++. +|+|||||+|++ ++.++++. +.|+++|+||++.||.. .
T Consensus 243 ~h~s~~~~----~~i~~-~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR~~l~~~~~~~--~ 314 (523)
T 1irx_A 243 AGSSYDTG----KEIIK-EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYARHRPNK--E 314 (523)
T ss_dssp TTSHHHHH----HHHHH-HHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHSSCTTS--C
T ss_pred CCcchhhH----HHHHH-HHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHHHHHHhcCCCC--C
Confidence 64 3332 33332 7999999999999999987 799999999975 99999998 99999999999888754 2
Q ss_pred cccCHH-HHHHhccccCCCCCCCCcccHH--HHHHHHHHH-hhcC-CHHHHHHHHHHH
Q psy2381 280 EIFSIK-QFCYWFNDCKYLSKSPAQFNLK--KLEWLNNFY-IKSY-DDKKLLNLIQPI 332 (350)
Q Consensus 280 ~~~~~~-el~~~f~~~~~i~~~~~~~d~~--kL~~~n~~~-i~~~-~~~~~~~~~~~~ 332 (350)
..++.+ ++.+.+++++++.++...++.+ ||.|+|+.| |+.+ +++++. ...||
T Consensus 315 ~~fs~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~i~~~~~~~~~~-~~~p~ 371 (523)
T 1irx_A 315 IKIDLGLGILNLYDEFEKVERIYFGVEGGKGDDEELRRTYELSMPKKPERLV-AQAPF 371 (523)
T ss_dssp EEECCSTTHHHHHHHHHHHHHHHTTSCC-----CHHHHHHHHHCSSCCCCCC-CCCCH
T ss_pred ceeCcchhHHHHHHHHHHHHHHHhcccccchhhhhhcceeEeeccCCCCCCC-CCCCH
Confidence 334444 4444442244565555566665 699999999 9987 665543 45566
No 14
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.94 E-value=2.1e-26 Score=232.00 Aligned_cols=237 Identities=18% Similarity=0.144 Sum_probs=172.5
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc---cc----------cHHHHHHHHHHHHHcCCCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN---RS----------TLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~---r~----------~~~~~~~i~~dL~wlGl~~d 70 (350)
.|+|+|++||||+|++++.+.++|. ++..|+.+++|+|++ +. .+.+.+.+.+++++||+.++
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6888899999999999999999984 567999999999975 22 56899999999999999984
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceecc------CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYYC------YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~C------~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~ 144 (350)
...+++|++.+.+.+++++|+++|++|.+ ||.++ .+.|...|.. +++++ ..|.
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~--------------~~~yg~lsg~--~~~~l--~~g~--- 167 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT--------------DPTYGVLSRQ--DLDQL--QAGA--- 167 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG--------------CTTTTTTTTC----------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc--------------ccccccccCC--CHHHh--hcCC---
Confidence 44678999999999999999999999996 77543 1235444532 22321 1121
Q ss_pred EEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec--C-----------CCccchhhhhhh-cccCCCcEEEe--CCC-
Q psy2381 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA--D-----------GIPTYNFCAAID-DWDMKITHVIR--GDD- 207 (350)
Q Consensus 145 ~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~--d-----------G~PtY~~a~vVD-D~~~gIThvIR--G~D- 207 (350)
|+.. ...+.+..||++||+ + |.|+||++|++. ....|.++.|+ |.|
T Consensus 168 -rv~~----------------~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl 230 (461)
T 1li5_A 168 -RVDV----------------VDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDL 230 (461)
T ss_dssp ------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGG
T ss_pred -cccc----------------hhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCcc
Confidence 1111 011345578999986 3 458889999863 44457889998 999
Q ss_pred ---CCCCHHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCcccc
Q psy2381 208 ---HINNTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIF 282 (350)
Q Consensus 208 ---~l~~t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~ 282 (350)
|+.+.+.|... ++|++.|. +.|.+++.. +|+|||||.|+ +++++++++ +.|+++|.|++.-. ....-.+
T Consensus 231 ~fpH~~~~~aq~~a--~~g~~~~~~~~h~g~v~~-~G~KMSKS~GN~v~~~dll~~-~g~dalR~~ll~~~--~~~~~~f 304 (461)
T 1li5_A 231 MFPHHENEIAQSTC--AHDGQYVNYWMHSGMVMV-DREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSGH--YRSQLNY 304 (461)
T ss_dssp TTTHHHHHHHHHHH--HSSSCCEEEECCBCCEEE-TTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSSC--TTSCEEE
T ss_pred CchHHHHHHHHHHH--hcCCCCCcEEEEeeEEEE-CCeEccccCCCccChhHHhhh-CCHHHHHHHHHcCC--cCCCCCC
Confidence 56778888743 35887674 678888754 89999999997 899999987 99999999999632 2233346
Q ss_pred CHHHHHH
Q psy2381 283 SIKQFCY 289 (350)
Q Consensus 283 ~~~el~~ 289 (350)
|.+.|.+
T Consensus 305 s~~~l~~ 311 (461)
T 1li5_A 305 SEENLKQ 311 (461)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6665543
No 15
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=7.2e-26 Score=227.29 Aligned_cols=226 Identities=18% Similarity=0.126 Sum_probs=166.2
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHcCCCCC
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLNYD 70 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wlGl~~d 70 (350)
.|+|+|++||||+|++++.+.++|. ++..|+..++|+|++ ...+.+++.+.+++++||+.+|
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999998777773 556999999999974 2357899999999999999998
Q ss_pred CCCeeecCCHHHHHHHHHHHHHCCceec------cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy2381 71 EGPFYQTKRINRYFEIINYLLSNDYAYY------CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPV 144 (350)
Q Consensus 71 e~~~~QS~r~~~y~~~~~~L~~~G~aY~------C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~ 144 (350)
....+.|++.+.+.+++++|+++|+||. +||.++ .+.|..-++ . +.+++ ..|.
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~--------------~~~yg~Ls~-~-~~~~~--~~g~--- 170 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR--------------FKDYGKLSH-R-HLDEL--QAGA--- 170 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT--------------CTTTTTTTT-C-SCC-----------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccc--------------ccccccccC-C-ChHHh--hccC---
Confidence 7555899999999999999999999994 577443 234533332 2 33321 1111
Q ss_pred EEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec-------------CCCccchhhhhhhc-ccCCCcEEE--eCCCC
Q psy2381 145 IRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA-------------DGIPTYNFCAAIDD-WDMKITHVI--RGDDH 208 (350)
Q Consensus 145 ~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vVDD-~~~gIThvI--RG~D~ 208 (350)
|+.. ...+.+..||+|||. .|.|+||+.|++.. ...|-+..| .|.|+
T Consensus 171 -r~~~----------------~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl 233 (462)
T 3tqo_A 171 -RVEV----------------SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDL 233 (462)
T ss_dssp -----------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGG
T ss_pred -cccc----------------ccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEcccccc
Confidence 2111 112456789999996 58899999999854 344555555 57886
Q ss_pred C----CCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCC
Q psy2381 209 I----NNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWS 275 (350)
Q Consensus 209 l----~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~ 275 (350)
+ .|...|.. .+.|.+.+.|..++.+++.+|+|||||.|+ ++++++++. +.|+++|.|++.-.+.
T Consensus 234 ~FpHheneiaqs~--a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls~~yr 302 (462)
T 3tqo_A 234 KFPHHENEIAQSE--AGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLRYFLLSGHYR 302 (462)
T ss_dssp TTTHHHHHHHHHH--HHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHSCTT
T ss_pred ccHHHHhHHHHHH--HHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhhhhhccCCCC
Confidence 5 56666653 234765566655555568899999999998 799999986 9999999999986553
No 16
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.92 E-value=2.2e-24 Score=223.49 Aligned_cols=248 Identities=15% Similarity=0.114 Sum_probs=183.0
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCc------------------------------------
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDI------------------------------------ 47 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~------------------------------------ 47 (350)
.|+|||+|||||+|++++...+||- +...++-.|.|.+.
T Consensus 111 spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~ 190 (592)
T 1iq0_A 111 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQD 190 (592)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHH
Confidence 6999999999999999998888773 34566666777641
Q ss_pred ----------------------ccccHHHHHHHHHHHHHcCCCCCCCCeeecCC--HHHHHHHHHHHHHCCceeccCCCH
Q psy2381 48 ----------------------NRSTLSATQTIIDGMKWLGLNYDEGPFYQTKR--INRYFEIINYLLSNDYAYYCYSSV 103 (350)
Q Consensus 48 ----------------------~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r--~~~y~~~~~~L~~~G~aY~C~cs~ 103 (350)
++..+.+.+.+.+++++|||.+|. ....|+. .+.+.+++++|.++|++|.|.-
T Consensus 191 ~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~-~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~-- 267 (592)
T 1iq0_A 191 PEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDL-LVWESDIVRAGLLQKALALLEQSPHVFRPRE-- 267 (592)
T ss_dssp TTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSE-EEEHHHHHHTTHHHHHHHHHTTSTTEECCSS--
T ss_pred HHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEE-eccCCcccccchHHHHHHHHHHCCCcccCcc--
Confidence 122345677899999999999986 4567766 7789999999999999998710
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEecCCC
Q psy2381 104 EEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRADGI 183 (350)
Q Consensus 104 ~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~ 183 (350)
+ .|+| .+-++.+.. | ....+++.|+.|+||.
T Consensus 268 -------------g---~~~G-------------------~~~~~~~~~----------g----~~~~l~~~vi~ksdG~ 298 (592)
T 1iq0_A 268 -------------G---KYAG-------------------ALVMDASPV----------I----PGLEDPFFVLLRSNGT 298 (592)
T ss_dssp -------------S---TTTT-------------------CEEEECTTT----------S----CSCSCCEEEEECTTSC
T ss_pred -------------c---CcCC-------------------CEEEechhc----------C----CCCCCCceEEEecCCc
Confidence 1 1222 122233221 1 0123467999999999
Q ss_pred ccchh---hhhhh------cc-cC----------------------CCcEE--EeCCCCCCCHHHHHHHHHHhCCCCC--
Q psy2381 184 PTYNF---CAAID------DW-DM----------------------KITHV--IRGDDHINNTPRQINILKALGVTLP-- 227 (350)
Q Consensus 184 PtY~~---a~vVD------D~-~~----------------------gIThv--IRG~D~l~~t~~q~~l~~aLg~~~P-- 227 (350)
|+|.+ |.+++ |+ .. +.+|+ |+|.||..+.+++..+++++|++.|
T Consensus 299 ~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~ 378 (592)
T 1iq0_A 299 ATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAE 378 (592)
T ss_dssp BCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHT
T ss_pred eEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCC
Confidence 99976 66666 22 21 78888 6999999999999999999999763
Q ss_pred ceEeece--eecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHH-----HHHHhccccCCCCC
Q psy2381 228 FYGHLPM--VIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIK-----QFCYWFNDCKYLSK 299 (350)
Q Consensus 228 ~y~H~pl--l~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~-----el~~~f~~~~~i~~ 299 (350)
.+.|++. +. .+|+|||||.|+ +++++|+++|+ +++++++...++.-++.| .+. +.++.|. +...+.
T Consensus 379 ~~~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~--~~~~~~~~~~~~~~~~~e--~~a~~vg~~aiRyf~-L~~~~~ 452 (592)
T 1iq0_A 379 KAHHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEAT--RRARAIVEEKNPDHPDKE--EAARMVALGAIRFSM-VKTEPK 452 (592)
T ss_dssp TEEEEEECCEE-ETTBCSCC----CCBHHHHHHHHH--HHHHHHHHHHCTTCSCHH--HHHHHHHHHHHHHHH-HHSCTT
T ss_pred cEEEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHH--HHHHHHHHhhCCCCCcHH--HHHHhhcHHHHHHHH-HhcCCC
Confidence 6889944 74 478999999997 58999999887 788899988876433333 233 3688898 999999
Q ss_pred CCCcccHHHHHHHHH
Q psy2381 300 SPAQFNLKKLEWLNN 314 (350)
Q Consensus 300 ~~~~~d~~kL~~~n~ 314 (350)
++..||++++.+.|.
T Consensus 453 ~~~~Fd~d~~~~~~~ 467 (592)
T 1iq0_A 453 KQIDFRYQEALSFEG 467 (592)
T ss_dssp SCEEECHHHHHCSSS
T ss_pred CCCeecHHHHHHHhc
Confidence 999999999998776
No 17
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.91 E-value=1.6e-24 Score=220.01 Aligned_cols=261 Identities=17% Similarity=0.140 Sum_probs=175.3
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------cccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wl 65 (350)
+++.-.|+|||++||||+|++++.+.+||.+ .|..++++.++| +++..+++.+.+.+++++|
T Consensus 8 ~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 87 (497)
T 2csx_A 8 YVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL 87 (497)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 6777789999999999999999999999965 899999999998 5556788999999999999
Q ss_pred CCCCCCCCeeecC--CHHHHHHHHHHHHHCCceecc-----CCCHHHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCCCC
Q psy2381 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRP--EPGKILPS 136 (350)
Q Consensus 66 Gl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~--l~~~ee~~ 136 (350)
|+.||. .+++|+ +.+.+++++++|.++|++|.| +|+..+-... .... ...|.|.. . +.+.
T Consensus 88 gi~~d~-~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~-~~~~------~~~~~c~~~~~-~~~~-- 156 (497)
T 2csx_A 88 KIEYTK-FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKS-EAEL------AEDHTCPIHQK-KCEY-- 156 (497)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------------------------------
T ss_pred CCcCCC-CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEcc-HHHh------ccCCCCCCCCC-CCeE--
Confidence 999996 678888 999999999999999999998 7877643211 1000 00145531 1 2222
Q ss_pred CCCCCCceEEEeCCCCCceeEEeeee----------------eee-ecCCCCCCCeEEEe--cC---CC--c---cchh-
Q psy2381 137 IPINRKPVIRFKNPLYGNITWNDLIK----------------GKI-TISNKELDDLVIVR--AD---GI--P---TYNF- 188 (350)
Q Consensus 137 ~~~~~~~~~R~k~~~~~~~~~~D~v~----------------G~~-~~~~~~~~D~Vl~R--~d---G~--P---tY~~- 188 (350)
-....+.|+++. |.|.+. ..+ .+-...+.|++|.| .+ |. | ++++
T Consensus 157 ---~~~~~wf~~l~~-----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~ 228 (497)
T 2csx_A 157 ---IKEPSYFFRLSK-----YQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIY 228 (497)
T ss_dssp ----CCEEEEECTTS-----SHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEEC
T ss_pred ---EecCceEEEcHH-----HHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEE
Confidence 122356677653 111000 000 00012468999999 44 53 4 4443
Q ss_pred ---------hhhhhc---ccCCCcEEEeCCCCCC----CHHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCCCC-C
Q psy2381 189 ---------CAAIDD---WDMKITHVIRGDDHIN----NTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRKEA-T 250 (350)
Q Consensus 189 ---------a~vVDD---~~~gIThvIRG~D~l~----~t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g~-~ 250 (350)
++++.| ....+++.+.|.|++. +.+.| ..++|+++|. +.|+++++. +|+|||||.|+ +
T Consensus 229 vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~---l~~~g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i 304 (497)
T 2csx_A 229 VWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAF---LMSLGYELPKKVFAHGWWTV-EGKKMSKTLGNVV 304 (497)
T ss_dssp SHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHH---HHHHTCCCCSCEEEECCEES-SSSBCCTTTTCCC
T ss_pred EecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHH---HHHcCCCCCcEEEECcEEEe-CCceeCCcCCCCC
Confidence 444444 2337788899999975 44444 3577998885 788898876 99999999997 7
Q ss_pred CHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 251 DIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 251 ~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
++.++++. +.++++|.|++..+- ....-.++.+.+.+
T Consensus 305 ~~~dli~~-~g~DalR~~ll~~~~-~~~d~~fs~~~l~~ 341 (497)
T 2csx_A 305 DPYEVVQE-YGLDEVRYFLLREVP-FGQDGDFSKKAILN 341 (497)
T ss_dssp CHHHHHHH-HCHHHHHHHHHHSSC-TTSCEECCHHHHHH
T ss_pred CHHHHHHH-CCcHHHHHHHHhcCC-cccCCCCChHHHHH
Confidence 89999975 899999999998652 22233466666544
No 18
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.89 E-value=1.5e-23 Score=212.83 Aligned_cols=262 Identities=19% Similarity=0.184 Sum_probs=175.4
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------cccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------INRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wl 65 (350)
+++--.|+|||++||||+|++++.+.+||.+ .|.-++++.++| +....+.+.+.+.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4455558889999999999999999999954 899999999988 4455678999999999999
Q ss_pred CCCCCCCCeeecC--CHHHHHHHHHHHHHCCceecc-----CCCHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCCC
Q psy2381 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPE-PGKILPSI 137 (350)
Q Consensus 66 Gl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l-~~~ee~~~ 137 (350)
|+.+|. .+++|+ +.+.+++++++|.++|++|.+ +|...+-. ......-+|.|..- .+.+..
T Consensus 86 gi~~d~-~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~--------~~~~~l~~g~c~~~~~~v~~~-- 154 (500)
T 2d5b_A 86 GIAYDD-FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERF--------YTEKELVEGLCPIHGRPVERR-- 154 (500)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE--------CCTTTSBTTBCTTTCSBCEEE--
T ss_pred CCcCCC-CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcc--------cCchhccCCcCCCCCCeeeEE--
Confidence 999996 678888 899999999999999999987 35443210 00000012455321 011100
Q ss_pred CCCCCceEEEeCCCCCceeEEeeeeee-------e----------ecCCCCCCCeEEEe--cC---CC--c---------
Q psy2381 138 PINRKPVIRFKNPLYGNITWNDLIKGK-------I----------TISNKELDDLVIVR--AD---GI--P--------- 184 (350)
Q Consensus 138 ~~~~~~~~R~k~~~~~~~~~~D~v~G~-------~----------~~~~~~~~D~Vl~R--~d---G~--P--------- 184 (350)
....+.|+++. |.|.+... + .+-...+.|++|.| .+ |. |
T Consensus 155 ---~~~~wf~~l~~-----~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~v 226 (500)
T 2d5b_A 155 ---KEGNYFFRMEK-----YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFV 226 (500)
T ss_dssp ---EEEEEEECGGG-----GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECH
T ss_pred ---ecCceEEEcHH-----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEE
Confidence 01123334321 11100000 0 00013468999999 44 53 4
Q ss_pred ------------cchhhhhhhcccCCCcEEEeCCCCCCCHHHHH---HHHHHhCCCCCc-eEeeceeecCCCceeccCCC
Q psy2381 185 ------------TYNFCAAIDDWDMKITHVIRGDDHINNTPRQI---NILKALGVTLPF-YGHLPMVIDSNKVKISKRKE 248 (350)
Q Consensus 185 ------------tY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~---~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~g 248 (350)
.|+..+..+++. +.+..+.|.|++. +.+. .+..++|+++|. +.|+++++..+|+|||||.|
T Consensus 227 Wfds~~~y~~~~g~~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~G 303 (500)
T 2d5b_A 227 WFDALLNYVSALDYPEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLG 303 (500)
T ss_dssp HHHHHTHHHHTTTTTTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTT
T ss_pred ccccchhhHHHcCCCCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCC
Confidence 355444333333 5677789999975 3331 234678998886 78889998889999999999
Q ss_pred C-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 249 A-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 249 ~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
+ +++.++++. +.++++|.|++..+- ......++.+.+.+
T Consensus 304 N~i~p~d~i~~-~g~DalR~~ll~~~~-~~~d~~fs~~~~~~ 343 (500)
T 2d5b_A 304 NVVDPFALLEK-YGRDALRYYLLREIP-YGQDTPVSEEALRT 343 (500)
T ss_dssp CCCCHHHHHHH-HCHHHHHHHHHHHSC-TTSCEECCHHHHHH
T ss_pred CCCCHHHHHHh-cCcHHHHHHHHhcCC-cccCCCCCHHHHHH
Confidence 7 789999975 899999999998642 22233466666544
No 19
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.89 E-value=1e-22 Score=205.71 Aligned_cols=226 Identities=16% Similarity=0.190 Sum_probs=147.8
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHH-----HcCCeEEEEecCC----------Ccc-------------cccHHHHHHHHH
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYAR-----HFNGIFILRIEDT----------DIN-------------RSTLSATQTIID 60 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar-----~~~G~~iLRieDt----------D~~-------------r~~~~~~~~i~~ 60 (350)
.|+|+|++||||+|++++..+++| .+...|+..|+|+ |++ ...+.+++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 588889999999999998777776 4667899999998 543 124779999999
Q ss_pred HHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-CC
Q psy2381 61 GMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGK-IL 134 (350)
Q Consensus 61 dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~-ee 134 (350)
+++.||+.+|......|++.+...+++++|+++|+||. .||..+ .+.| |.-.+. +. ++
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~--------------f~~y-G~ls~~-~~~~~ 192 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC--------------FKSY-GEMAGI-DLIDK 192 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG--------------CTTT-TTTTC-------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc--------------cCCc-cccCCC-Chhhh
Confidence 99999999987556789999999999999999999996 455333 1345 222222 22 22
Q ss_pred CCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEEEec---C-------------CCccchhhhhhh--ccc
Q psy2381 135 PSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVIVRA---D-------------GIPTYNFCAAID--DWD 196 (350)
Q Consensus 135 ~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~---d-------------G~PtY~~a~vVD--D~~ 196 (350)
+ ..|. |. ++...+.++.||+|||. + |+|.||+.|++. .++
T Consensus 193 ~--~~g~----r~----------------~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~l 250 (501)
T 3sp1_A 193 D--MTLP----RV----------------DVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYF 250 (501)
T ss_dssp ---------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHT
T ss_pred h--ccCC----cc----------------CcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHc
Confidence 1 0110 10 11122456789999986 2 689999999873 333
Q ss_pred C-CCcEEEeCCCCC----CCHHHHHHHHHHhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHH
Q psy2381 197 M-KITHVIRGDDHI----NNTPRQINILKALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYL 269 (350)
Q Consensus 197 ~-gIThvIRG~D~l----~~t~~q~~l~~aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l 269 (350)
. .++.-+-|.|++ .|.+.|..- +.|-+.+ .|.|..++ +.+|+|||||.|+ +++++++++||.|+++|.||
T Consensus 251 g~~~DIH~gG~DLifpHheneiAqs~a--~~g~~~~~~w~H~g~v-~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~l 327 (501)
T 3sp1_A 251 KDALDIHLGGVDHIGVHHINEIAIAEC--FLNKKWCDVFVHGEFL-IMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLC 327 (501)
T ss_dssp TTCCCEEEEEGGGTTTHHHHHHHHHHH--HHTSCCCSEEEEECCE-ECC----------CCCHHHHHHTTCCHHHHHHHH
T ss_pred CCCceEEeeccccccchHHHHHHHHHH--ccCCCCCeEEEEeeeE-eeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHH
Confidence 2 233334588885 566677532 2354334 36787887 5699999999997 79999999999999999999
Q ss_pred HHhCCC
Q psy2381 270 ARLGWS 275 (350)
Q Consensus 270 ~~lG~~ 275 (350)
+.-.+.
T Consensus 328 ls~~yr 333 (501)
T 3sp1_A 328 LTSHYR 333 (501)
T ss_dssp HTSCTT
T ss_pred HhccCC
Confidence 875443
No 20
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-22 Score=200.55 Aligned_cols=198 Identities=14% Similarity=0.024 Sum_probs=145.9
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcccccHH--------HHHHHHHHHHHcCCCCCC
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDINRSTLS--------ATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~r~~~~--------~~~~i~~dL~wlGl~~de 71 (350)
|.++|+| ||.|||||+++++.+|.+++ .|++++++|.| |+..+...+ +.+.|..+|.|+|++|++
T Consensus 42 vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k 118 (394)
T 2dlc_X 42 LYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEK 118 (394)
T ss_dssp EEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred EEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 6789988 79999999999999999998 89999999999 765443332 456778889999999998
Q ss_pred -CCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCC
Q psy2381 72 -GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNP 150 (350)
Q Consensus 72 -~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~ 150 (350)
.++.||++.. +.++++.++ .|.|+||..++..... .. .|+..
T Consensus 119 ~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~----------------~~---------------~r~~~- 161 (394)
T 2dlc_X 119 LKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA----------------DV---------------VKQVA- 161 (394)
T ss_dssp CEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT----------------TT---------------SCCCS-
T ss_pred cEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH----------------hh---------------hcccC-
Confidence 4789999853 233344444 7899999998853210 00 00000
Q ss_pred CCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceE
Q psy2381 151 LYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYG 230 (350)
Q Consensus 151 ~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~ 230 (350)
.+ +-|..+|..--+.|...++++||++|.|+..++..++.+++.+|+..|.+.
T Consensus 162 --------------------~~-------~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l 214 (394)
T 2dlc_X 162 --------------------NP-------LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHL 214 (394)
T ss_dssp --------------------SC-------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEE
T ss_pred --------------------Cc-------cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCCCCEEE
Confidence 00 235668888888888899999999999999999999999999999999999
Q ss_pred eeceeecCC-CceeccCCCCCCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 231 HLPMVIDSN-KVKISKRKEATDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 231 H~pll~~~~-g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~l 272 (350)
|.|+|.+.+ |+|||||.++.+| +|- =+|+.|...+...
T Consensus 215 ~~pll~gl~~G~KMSKS~~ns~I-~L~---D~p~~i~kKI~ka 253 (394)
T 2dlc_X 215 MNPMVPGLAQGGKMSASDPNSKI-DLL---EEPKQVKKKINSA 253 (394)
T ss_dssp EECCCCCCC----------CCSC-BTT---CCHHHHHHHHHHS
T ss_pred ecccccCCCCCCcCCCCCCCCEE-ecc---CCHHHHHHHHHHh
Confidence 999999999 9999999876433 121 3699999999873
No 21
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.88 E-value=1.8e-22 Score=200.78 Aligned_cols=244 Identities=17% Similarity=0.117 Sum_probs=151.1
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHcCCC-
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWLGLN- 68 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wlGl~- 68 (350)
-.|+|+|++||||+|++++.+.+||. ++..|+..++|.|++ ...+.+.+.+.+++++||+.
T Consensus 45 ~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~ 124 (414)
T 3c8z_A 45 CGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLP 124 (414)
T ss_dssp CCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 36999999999999999999888885 667899999999864 22477899999999999998
Q ss_pred CCCCCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEe
Q psy2381 69 YDEGPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFK 148 (350)
Q Consensus 69 ~de~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k 148 (350)
+|. .++.|++.+.+++++++|+++|++|.+.|+.+ . .---....|. .|..+ +...
T Consensus 125 ~d~-~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e-------~-~~~f~~~~~~-~~g~l-~~~~-------------- 179 (414)
T 3c8z_A 125 PHD-YVAATDAIAEVVEMVEKLLASGAAYIVEDAEY-------P-DVYFRADATA-QFGYE-SGYD-------------- 179 (414)
T ss_dssp CSE-EEEGGGCHHHHHHHHHHHHHHTSEEECSCSSC-------C-CEEECTTSST-TTTTT-TCCC--------------
T ss_pred Ccc-eecccchHHHHHHHHHHHHHCCCEEeccCCcC-------C-CEEEEchhhh-hhHhh-cCCC--------------
Confidence 876 56788999999999999999999998776400 0 0000001111 11111 1100
Q ss_pred CCCCCceeEEeeee------eee-ecCCCCCCCeEEEec-------------CCCccchhhhhh--hccc-CCCcEEEeC
Q psy2381 149 NPLYGNITWNDLIK------GKI-TISNKELDDLVIVRA-------------DGIPTYNFCAAI--DDWD-MKITHVIRG 205 (350)
Q Consensus 149 ~~~~~~~~~~D~v~------G~~-~~~~~~~~D~Vl~R~-------------dG~PtY~~a~vV--DD~~-~gIThvIRG 205 (350)
.++.+. |+. ...+....||++||. .|+|.||+.|++ ..++ ..++..+-|
T Consensus 180 --------~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G 251 (414)
T 3c8z_A 180 --------RDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGG 251 (414)
T ss_dssp --------HHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEE
T ss_pred --------HHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEec
Confidence 000000 111 112334567888873 256889988864 2222 123333347
Q ss_pred CC----CCCCHHHHHHHHHHhCCCCC--ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCC
Q psy2381 206 DD----HINNTPRQINILKALGVTLP--FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGN 278 (350)
Q Consensus 206 ~D----~l~~t~~q~~l~~aLg~~~P--~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~ 278 (350)
.| |+.+.+.|... +.|.++| .+.|..++ +.+|+|||||.|+ +++++++++|+.|+++|.||+.-. ...
T Consensus 252 ~D~~~~H~~~~~a~~~a--~~g~~~~~~~~~h~g~v-~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~--~~~ 326 (414)
T 3c8z_A 252 SDLIFPHHEYSAAHAES--VTGERRFARHYVHTGMI-GWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGH--YRE 326 (414)
T ss_dssp GGGTTTHHHHHHHHHHH--HHCCSCSEEEEEEECCB-C-------------CBHHHHHHTTCCHHHHHHHHHTSC--TTS
T ss_pred cccccHHHHHHHHHHHH--hcCCCCcCeEEEEcCEE-ecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecC--cCC
Confidence 77 55666666532 2487444 36777777 4589999999997 899999999999999999999722 222
Q ss_pred ccccCHHHHHH
Q psy2381 279 EEIFSIKQFCY 289 (350)
Q Consensus 279 ~~~~~~~el~~ 289 (350)
.-.++.+.+.+
T Consensus 327 d~~fs~~~l~~ 337 (414)
T 3c8z_A 327 DRFWSNEVLDE 337 (414)
T ss_dssp CBCCCHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 23356655543
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.83 E-value=2.8e-20 Score=187.20 Aligned_cols=208 Identities=21% Similarity=0.197 Sum_probs=149.9
Q ss_pred cceEee-CCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEE-------------------------ecCCC---cc---
Q psy2381 3 IVRTRF-APSPTGNLHIGGIRTALFSWAYARHF--NGIFILR-------------------------IEDTD---IN--- 48 (350)
Q Consensus 3 ~v~~RF-APsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLR-------------------------ieDtD---~~--- 48 (350)
+|++=| +|.|||+||+||+|++++.+.+||-. .|-=++| ....+ |+
T Consensus 31 ~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y 110 (464)
T 3fnr_A 31 SFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYY 110 (464)
T ss_dssp EEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSSCC
T ss_pred EEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchhhc
Confidence 467777 79999999999999999998888743 2322221 00000 10
Q ss_pred -------------------------------cccHHHHHHHHHHHHHcCCCCCCCCeeecCCHHHHHHHHHHHHHCCcee
Q psy2381 49 -------------------------------RSTLSATQTIIDGMKWLGLNYDEGPFYQTKRINRYFEIINYLLSNDYAY 97 (350)
Q Consensus 49 -------------------------------r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~G~aY 97 (350)
+..+...+.|.++++.||+.+|. .+.-|.-.+...+++++|.++|.+|
T Consensus 111 ~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~-~~~Ess~~~~~~~vv~~L~~~g~~~ 189 (464)
T 3fnr_A 111 KGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDS-YVSERSYYDALNATLESLKEHKGIY 189 (464)
T ss_dssp CSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSC-EEEGGGGSTTHHHHHHHHHHTTCEE
T ss_pred CccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-ecCHHHHHHHHHHHHHHHHHCCCEE
Confidence 00122345788899999999997 3333332337788999999999999
Q ss_pred ccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCCCCCCeEE
Q psy2381 98 YCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNKELDDLVI 177 (350)
Q Consensus 98 ~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~~~~D~Vl 177 (350)
.. +| ++-++.++. | .-.|+||
T Consensus 190 e~-----------------------dG-------------------a~~~~~~~~----------g-------~~~~~vl 210 (464)
T 3fnr_A 190 EQ-----------------------EG-------------------KIWLASSQK----------G-------DEKDRVI 210 (464)
T ss_dssp EE-----------------------TT-------------------EEEECGGGG----------T-------CSSCEEE
T ss_pred Ee-----------------------CC-------------------eEEEEeccc----------C-------CCCceEE
Confidence 41 11 122232210 1 1247999
Q ss_pred EecCCCccch---hhhhhhcccCCCcEEE--eCCCCCCCHHHHHHHHHHhCCCCCceEeec--ee-ecCCCc--eeccCC
Q psy2381 178 VRADGIPTYN---FCAAIDDWDMKITHVI--RGDDHINNTPRQINILKALGVTLPFYGHLP--MV-IDSNKV--KISKRK 247 (350)
Q Consensus 178 ~R~dG~PtY~---~a~vVDD~~~gIThvI--RG~D~l~~t~~q~~l~~aLg~~~P~y~H~p--ll-~~~~g~--KLSKR~ 247 (350)
+|+||.|||. +|+++++..++++++| +|.||..+.+++..+++++|+++|.+.|++ ++ ++.+|+ |||||.
T Consensus 211 ~ksDG~~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~ 290 (464)
T 3fnr_A 211 IREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRA 290 (464)
T ss_dssp ECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---C
T ss_pred EeCCCceehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcC
Confidence 9999999997 8899999999999995 999999999999999999999888777764 66 556775 999999
Q ss_pred CC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 248 EA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 248 g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
|+ +++.+++++ +.++++|.|++.
T Consensus 291 Gn~v~l~dll~~-~g~dalRy~~l~ 314 (464)
T 3fnr_A 291 GNFILMSDVVDE-IGSDALRYIFLS 314 (464)
T ss_dssp CSSCBHHHHHHH-HCHHHHHHHTTS
T ss_pred CCCCCHHHHHhh-ccHHHHHHHHHh
Confidence 97 599999987 779999988864
No 23
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.79 E-value=5e-19 Score=173.64 Aligned_cols=255 Identities=15% Similarity=0.032 Sum_probs=168.2
Q ss_pred cceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc-------cccHHHHHH-HHHHHHHcCCCCC
Q psy2381 3 IVRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN-------RSTLSATQT-IIDGMKWLGLNYD 70 (350)
Q Consensus 3 ~v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~-------r~~~~~~~~-i~~dL~wlGl~~d 70 (350)
.|.++|. |||.|||||+.+++.+|.+.+ .|+++++.|.| |+.+ +++..+.+. +...|.|+|++|+
T Consensus 37 ~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 37 KIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp EEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred EEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 3678888 569999999999999999987 78999999999 7533 234555555 5556799999999
Q ss_pred C-CCeeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeC
Q psy2381 71 E-GPFYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKN 149 (350)
Q Consensus 71 e-~~~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~ 149 (350)
+ .++.||+.. .+.+++..++. |.|+||..+++.. . . .. .|++.
T Consensus 114 k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~-------~-~--------~v---------------~~~~~ 157 (372)
T 1n3l_A 114 KLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKA-------G-A--------EV---------------VKQVE 157 (372)
T ss_dssp TEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHH-------T-T--------TT---------------SCCCS
T ss_pred hcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhc-------h-h--------hh---------------hcccC
Confidence 7 478999984 33445555554 8899999887532 0 0 00 00000
Q ss_pred CCCCceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCce
Q psy2381 150 PLYGNITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFY 229 (350)
Q Consensus 150 ~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y 229 (350)
+ + +-|..+|..--+.|-...+.+||++|.|+..++..++.|++.+|+..|..
T Consensus 158 ~----~------------------------~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~ 209 (372)
T 1n3l_A 158 H----P------------------------LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVH 209 (372)
T ss_dssp S----C------------------------CHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEE
T ss_pred C----C------------------------cceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEE
Confidence 0 0 12445676666677777899999999999999999999999999999999
Q ss_pred EeeceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHh--------ccccCCCCCC
Q psy2381 230 GHLPMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYW--------FNDCKYLSKS 300 (350)
Q Consensus 230 ~H~pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~--------f~~~~~i~~~ 300 (350)
.|.|+|.+.+|+|||||.++.+| +|- -+|+.+..++.. -.+++ +.+.-.+-++++. |+ +++-.++
T Consensus 210 l~~pll~gldG~KMSKS~~ns~I-~L~---d~p~~i~kKi~~-A~td~~~~~d~~v~~~lk~~l~~~~~~f~-~er~~~~ 283 (372)
T 1n3l_A 210 LMNPMVPGLTGSKMSSSEEESKI-DLL---DRKEDVKKKLKK-AFCEPGNVENNGVLSFIKHVLFPLKSEFV-ILRDEKW 283 (372)
T ss_dssp EEECCCCCSSCC-------CCSC-BTT---CCHHHHHHHHHT-CCCCTTCCSSCHHHHHHHHTTGGGTTCEE-ECCCGGG
T ss_pred EecCccCCCCcccccCCCCCCeE-ecc---CCHHHHHHHHHH-ccCCCCCCCcccHHHHHHHhhhhhhccee-ecccccc
Confidence 99999999999999999876333 222 259999999976 33332 1111234445554 65 4422222
Q ss_pred CCcccHHHHHHHHHHHhhc-CCHHHHHHHHH
Q psy2381 301 PAQFNLKKLEWLNNFYIKS-YDDKKLLNLIQ 330 (350)
Q Consensus 301 ~~~~d~~kL~~~n~~~i~~-~~~~~~~~~~~ 330 (350)
....+.+.+..+-++|-.. +.+.++.+.+.
T Consensus 284 g~~~~~~~i~el~~~~~~g~~~~~~~K~~La 314 (372)
T 1n3l_A 284 GGNKTYTAYVDLEKDFAAEVVHPGDLKNSVE 314 (372)
T ss_dssp TCCEEESSHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3334445555566666654 56666555544
No 24
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.79 E-value=3.2e-19 Score=184.91 Aligned_cols=254 Identities=13% Similarity=0.180 Sum_probs=182.1
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecC-------------------------CC------------
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIED-------------------------TD------------ 46 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieD-------------------------tD------------ 46 (350)
.|+|+|+|||||+|++++-+.+||- +....+-.|.| +|
T Consensus 151 spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~~~~~~ 230 (607)
T 1f7u_A 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVRINKD 230 (607)
T ss_dssp CCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHHHHHHHHH
Confidence 7999999999999999987777773 33455555555 11
Q ss_pred -----------------------------c------ccccHHHHHHHHHHHHHcCCCCCCCCeeecCCH-HHHHHHHHHH
Q psy2381 47 -----------------------------I------NRSTLSATQTIIDGMKWLGLNYDEGPFYQTKRI-NRYFEIINYL 90 (350)
Q Consensus 47 -----------------------------~------~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r~-~~y~~~~~~L 90 (350)
+ ++..+.+.+.+.++++.||+.+|. ....|++. +...++++.|
T Consensus 231 ~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~-~~~ES~~~~~~~~~vi~~L 309 (607)
T 1f7u_A 231 IEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDV-YSGESQVSKESMLKAIDLF 309 (607)
T ss_dssp HHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSE-EEEGGGCCHHHHHHHHHHH
T ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccee-ecCcchhhhhHHHHHHHHH
Confidence 1 012355778899999999999986 45777777 7889999999
Q ss_pred HHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCCC
Q psy2381 91 LSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISNK 170 (350)
Q Consensus 91 ~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~~ 170 (350)
.++|++|.- +| ++-|++++ | |+
T Consensus 310 ~~kG~~ye~-----------------------dG-------------------a~~~~~~~-----~-----g~------ 331 (607)
T 1f7u_A 310 KEKGLTHED-----------------------KG-------------------AVLIDLTK-----F-----NK------ 331 (607)
T ss_dssp HHTTCEEEE-----------------------TT-------------------EEEEEGGG-----T-----CT------
T ss_pred HhCCCEEEE-----------------------CC-------------------cEEEEecc-----c-----CC------
Confidence 999999941 01 11122221 1 11
Q ss_pred CCCCeEEEecCCCccch---hhhhhhcc-cCCCcEEE--eCCCCCCCHHHHHHHHHHhCCCCC-ceEeece-eecCCCce
Q psy2381 171 ELDDLVIVRADGIPTYN---FCAAIDDW-DMKITHVI--RGDDHINNTPRQINILKALGVTLP-FYGHLPM-VIDSNKVK 242 (350)
Q Consensus 171 ~~~D~Vl~R~dG~PtY~---~a~vVDD~-~~gIThvI--RG~D~l~~t~~q~~l~~aLg~~~P-~y~H~pl-l~~~~g~K 242 (350)
..++.|+.|+||.|+|. +|.+++.+ .++.+++| .|.||....++...+.+++|++.+ .+.|+++ +++ |
T Consensus 332 ~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v~----k 407 (607)
T 1f7u_A 332 KLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQ----G 407 (607)
T ss_dssp TTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEE----S
T ss_pred CCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecccccc----c
Confidence 23468999999999996 57788876 46889997 999998888888899999999766 5899988 443 6
Q ss_pred eccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC----CccccCHHH-----HHHhccccCCCCCCCCcccHHHHHHH
Q psy2381 243 ISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG----NEEIFSIKQ-----FCYWFNDCKYLSKSPAQFNLKKLEWL 312 (350)
Q Consensus 243 LSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~----~~~~~~~~e-----l~~~f~~~~~i~~~~~~~d~~kL~~~ 312 (350)
||||.|+ +++++|+++.. .++ .+ +.. . .+. ..+..++.+ .++.|+ ++.-.+++..||++++.++
T Consensus 408 MSkR~G~~v~L~dLlde~~-~~a-~~-~~~-~-~~~~~~~~~e~~~~a~~vgi~avry~~-Ls~~~~s~~~Fd~d~~~~~ 481 (607)
T 1f7u_A 408 MSTRKGTVVFLDNILEETK-EKM-HE-VMK-K-NENKYAQIEHPEEVADLVGISAVMIQD-MQGKRINNYEFKWERMLSF 481 (607)
T ss_dssp CCGGGTCCCBHHHHHHHHH-HHH-HH-HHH-T-CHHHHTTCSCHHHHHHHHHHHHHHHHH-HSSCTTCCEECCHHHHHCC
T ss_pred ccCCCCCcccHHHHHHHHH-HHH-HH-HHH-h-CcccccchhhHHHHHHHHHHHHHHHHH-hccCCCCCcccCHHHHHHH
Confidence 9999997 68999998843 345 22 333 1 110 123334444 678898 9999999999999999988
Q ss_pred HH---HHhhcCCHHHHHHHHHHHHHhc
Q psy2381 313 NN---FYIKSYDDKKLLNLIQPIIKKK 336 (350)
Q Consensus 313 n~---~~i~~~~~~~~~~~~~~~~~~~ 336 (350)
+. -||+ .-..++...+.+.
T Consensus 482 ~g~t~pylq-----Ya~aRi~SIlrka 503 (607)
T 1f7u_A 482 EGDTGPYLQ-----YAHSRLRSVERNA 503 (607)
T ss_dssp SSSSHHHHH-----HHHHHHHHHHHHT
T ss_pred hccchHHHH-----HHHHHHHHHHHHh
Confidence 75 4554 3444555555543
No 25
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.79 E-value=3.1e-20 Score=190.23 Aligned_cols=263 Identities=17% Similarity=0.144 Sum_probs=150.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCc-------------ccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDI-------------NRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~-------------~r~~~~~~~~i~~dL~wl 65 (350)
+++.-.|+|||++||||+|++++.+.+||. ++..|+..++|.+. ....+.+.+.+.++|++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 567777999999999999999999888884 44578888888654 344678999999999999
Q ss_pred CCCCCCCCeeecC--CHHHHHHHHHHHHHCCceecc-----CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy2381 66 GLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIP 138 (350)
Q Consensus 66 Gl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~ 138 (350)
|+.+|. .++.++ +.+..++++++|.++|++|.+ ||+.++-.. .+.....+....+...|
T Consensus 108 gi~~d~-~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l-~~~~~~~~~~g~~c~~~------------ 173 (536)
T 4dlp_A 108 NSSNDD-YIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYY-GEEETEVRADGVRYGPQ------------ 173 (536)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGCEECTTSCEECTT------------
T ss_pred CCCCCc-ceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCccc-CHHHhhcCCCCCcccCC------------
Confidence 999996 444554 889999999999999999986 565442110 00000001000111122
Q ss_pred CCCCceEE------EeCCCCCceeEEeeeeee-------e----------ecCCCCCCCeEEEecC---C----------
Q psy2381 139 INRKPVIR------FKNPLYGNITWNDLIKGK-------I----------TISNKELDDLVIVRAD---G---------- 182 (350)
Q Consensus 139 ~~~~~~~R------~k~~~~~~~~~~D~v~G~-------~----------~~~~~~~~D~Vl~R~d---G---------- 182 (350)
|.+..+| |+++. |.|.+.-. + ++-...+.|++|-|++ |
T Consensus 174 -g~~~e~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v 247 (536)
T 4dlp_A 174 -GTPVEWVEEESYFFRLSA-----YQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHV 247 (536)
T ss_dssp -SSBCEEEEEEEEEECGGG-----GHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSE
T ss_pred -CCcceEEeccceEEecHH-----HHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCc
Confidence 2222222 22221 11110000 0 0011357899999973 1
Q ss_pred Cccch------hhhhh-----hcccC--CCcEEEeCCCCCC-CHHHHHHHHHHhCCCCCc-eEeeceeecCCCceeccCC
Q psy2381 183 IPTYN------FCAAI-----DDWDM--KITHVIRGDDHIN-NTPRQINILKALGVTLPF-YGHLPMVIDSNKVKISKRK 247 (350)
Q Consensus 183 ~PtY~------~a~vV-----DD~~~--gIThvIRG~D~l~-~t~~q~~l~~aLg~~~P~-y~H~pll~~~~g~KLSKR~ 247 (350)
..+|- +++.- ++... ..+..+-|.|++. .+..+..++.++|.++|. ...+++++ .+|+|||||.
T Consensus 248 ~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~-~~G~KMSKS~ 326 (536)
T 4dlp_A 248 MYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLF-NRGEKMSKSV 326 (536)
T ss_dssp ECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEE-C---------
T ss_pred eEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEe-eCCceecccC
Confidence 11221 11110 01111 1233456899864 122344556788998875 33336665 4999999999
Q ss_pred CC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 248 EA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 248 g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
|+ +++.++.+. +.++++|.|++..+ +......++.+.+++
T Consensus 327 GNvi~p~d~i~~-~GaDalR~~ll~~~-~~~~d~~fs~~~~~~ 367 (536)
T 4dlp_A 327 GNVIDPFELVER-YGLDQLRYFLMREV-PFGQDGSYSHEAIVN 367 (536)
T ss_dssp ---CCHHHHHHH-HCHHHHHHHHHHHS-CTTSCEECCHHHHHH
T ss_pred CCCCCHHHHHHH-cCcHHHHHHHHhcC-CCCCCCCCCHHHHHH
Confidence 97 789999876 88999999999853 222333467766654
No 26
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.78 E-value=8.4e-19 Score=169.03 Aligned_cols=257 Identities=13% Similarity=0.099 Sum_probs=177.9
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-------CCcccccHHHHHHHHHHHHHcCCCCCCC-Cee
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED-------TDINRSTLSATQTIIDGMKWLGLNYDEG-PFY 75 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD-------tD~~r~~~~~~~~i~~dL~wlGl~~de~-~~~ 75 (350)
|.+-| .|||.|||||+ .++.+|...+..|+..++.|.| .++.+..+++.+.+..++.++|++|+.- .++
T Consensus 35 vy~G~--~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~ 111 (323)
T 2cyb_A 35 AYVGY--EPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVL 111 (323)
T ss_dssp EEEEE--CCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEE
T ss_pred EEECc--CCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 44556 46799999997 6899999999999999998876 3344567888999999999999999973 589
Q ss_pred ecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCce
Q psy2381 76 QTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNI 155 (350)
Q Consensus 76 QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~ 155 (350)
||+.... .+ +.+....|.|.||..++.... .|.+ . . .
T Consensus 112 qS~~~~~-~~----~~~~~~~l~~~~t~~~l~~~~----------~~~~----~-~-----------------~------ 148 (323)
T 2cyb_A 112 GSEYQLS-RD----YVLDVLKMARITTLNRARRSM----------DEVS----R-R-----------------K------ 148 (323)
T ss_dssp GGGTTTS-HH----HHHHHHHHHHHSBHHHHHHHT----------TTTC----S-C-----------------S------
T ss_pred cchhccc-hH----HHHHHHHHhCccCHHHHhccc----------hhhc----c-c-----------------c------
Confidence 9998632 12 223335689999999885421 0100 0 0 0
Q ss_pred eEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeecee
Q psy2381 156 TWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMV 235 (350)
Q Consensus 156 ~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll 235 (350)
++ + +.|..+|.+..+.|+...+++||++|.|...++..++.|.+.+|.+.|...|.|+|
T Consensus 149 -----------------~~-~---~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll 207 (323)
T 2cyb_A 149 -----------------ED-P---MVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPIL 207 (323)
T ss_dssp -----------------SS-C---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCC
T ss_pred -----------------CC-C---CchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCcc
Confidence 00 0 34677999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhcc-----c--cCCCCCCCCcccHH
Q psy2381 236 IDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN-----D--CKYLSKSPAQFNLK 307 (350)
Q Consensus 236 ~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~-----~--~~~i~~~~~~~d~~ 307 (350)
.+.+|+|||||.++ +.+. -+|++|+..+...-..+...+.-.+-++++.|. . +.+-.+.....+.+
T Consensus 208 ~~l~G~KMSKS~~n~I~l~------d~p~~i~~Ki~~a~td~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~ 281 (323)
T 2cyb_A 208 VGLDGQKMSSSKGNYISVR------DPPEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYA 281 (323)
T ss_dssp BCTTSSBCCTTTTCSCBTT------CCHHHHHHHHHTSCCCTTCCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEES
T ss_pred cCCCCCcccCCcCceeCCC------CCHHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccCceeEechhhcCCCCCcc
Confidence 99999999999764 4454 269999999987422111112112334444442 0 11111111222223
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHHHH
Q psy2381 308 KLEWLNNFYIKS-YDDKKLLNLIQPII 333 (350)
Q Consensus 308 kL~~~n~~~i~~-~~~~~~~~~~~~~~ 333 (350)
.+..+-++|-.. +.+.++++.+...+
T Consensus 282 ~~~~l~~~~~~g~~~~~~~K~~la~~i 308 (323)
T 2cyb_A 282 SFEELAEDFKSGQLHPLDLKIAVAKYL 308 (323)
T ss_dssp SHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 444555666653 67777666655443
No 27
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.76 E-value=8.8e-18 Score=172.85 Aligned_cols=275 Identities=16% Similarity=0.194 Sum_probs=160.8
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHH--cCC---eEEEEecCCC-------------cccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH--FNG---IFILRIEDTD-------------INRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~--~~G---~~iLRieDtD-------------~~r~~~~~~~~i~~dL~wl 65 (350)
+++--.|+|||++||||+|++++.+.+||. ..| .|+.-+||.+ ++...+.+.+.+.++|++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 456667999999999999999999999883 334 5666666443 3455788999999999999
Q ss_pred CCCCCCCCeeec--CCHHHHHHHHHHHHHCCceec-----cCCCHHHHHHHHHHHhhcCCCCC------CCC---CCCCC
Q psy2381 66 GLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY-----CYSSVEEIESFRKKQRSFGEKPR------YNR---IWRPE 129 (350)
Q Consensus 66 Gl~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~~r~~~~~~~~~~~------Y~g---~cr~l 129 (350)
|+.||. .++.+ ++.+..+++.++|.++|++|. -||..++-.- .+. .-.|.-|. |.. .|...
T Consensus 101 gi~~d~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l-~~~-~v~g~cp~c~~~~~~gd~ce~cg~~ 177 (560)
T 3h99_A 101 NISYDN-YHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFL-PDR-FVKGTCPKCKSPDQYGDNCEVCGAT 177 (560)
T ss_dssp TCCCSE-EEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC-CGG-GEEEECTTTCCSSEETTBCTTTCCB
T ss_pred CCCCCC-ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCcee-cch-hcCCCCCCCCCcccccchhhhcccc
Confidence 999997 34333 455667788999999999994 1222111000 000 00011111 111 12211
Q ss_pred CCCCCCC----CCCCCCceEE------EeCCCCCceeEEeee-------------eeeee-cCCCCCCCeEEEecC---C
Q psy2381 130 PGKILPS----IPINRKPVIR------FKNPLYGNITWNDLI-------------KGKIT-ISNKELDDLVIVRAD---G 182 (350)
Q Consensus 130 ~~~ee~~----~~~~~~~~~R------~k~~~~~~~~~~D~v-------------~G~~~-~~~~~~~D~Vl~R~d---G 182 (350)
..+.|.. ...|.+..+| |+++. |.|.+ ++.+. +-...+.|+.|-|.. |
T Consensus 178 ~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG 252 (560)
T 3h99_A 178 YSPTELIEPKSVVSGATPVMRDSEHFFFDLPS-----FSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFG 252 (560)
T ss_dssp CCGGGCEEEEETTTCCCCEEEEEEEEEECGGG-----GHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSS
T ss_pred CChhhhcCCccccCCCCceEEecceEEEEHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCC
Confidence 0111110 0123333322 23221 11100 00000 001257899999988 5
Q ss_pred Ccc----------ch-----hhhhh------------------hcccCCCcEEEeCCCCCC-CHHHHHHHHHHhCCCCCc
Q psy2381 183 IPT----------YN-----FCAAI------------------DDWDMKITHVIRGDDHIN-NTPRQINILKALGVTLPF 228 (350)
Q Consensus 183 ~Pt----------Y~-----~a~vV------------------DD~~~gIThvIRG~D~l~-~t~~q~~l~~aLg~~~P~ 228 (350)
.|. |- +..++ .|....+.|++ |.|++. .+....+++.++|++.|.
T Consensus 253 ~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~ 331 (560)
T 3h99_A 253 FEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPS 331 (560)
T ss_dssp CBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCS
T ss_pred eeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCc
Confidence 531 11 11111 12233446666 899964 233455677889998884
Q ss_pred -eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 229 -YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 229 -y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
...+++++. +|+|||||.|+ +++.+++++ +.++++|.||+..+-.....-.++.+.+++
T Consensus 332 ~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 332 NLFVHGYVTV-NGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQ 392 (560)
T ss_dssp EEEEECCEEE-TTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHH
T ss_pred EEEEEeEEEe-CCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 233355544 89999999997 799999988 999999999998653221223467776654
No 28
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.70 E-value=2.7e-17 Score=167.75 Aligned_cols=258 Identities=18% Similarity=0.182 Sum_probs=158.9
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCC----------------cccccHHHHHHHHHHHHHcCC
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARH--FNGIFILRIEDTD----------------INRSTLSATQTIIDGMKWLGL 67 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD----------------~~r~~~~~~~~i~~dL~wlGl 67 (350)
+=-.|+|||.+||||+|++++.+.+||. ..|.-++++.++| +......+.+.+.+++++||+
T Consensus 17 ~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3345899999999999999999999995 4788888888888 222345789999999999999
Q ss_pred CCCCCCeeecC--CHHHHHHHHHHHHHCCceecc-----CCCHHHHHHHHHHHhhcCCCCCCCC-CCCCCCCCCCCCCCC
Q psy2381 68 NYDEGPFYQTK--RINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNR-IWRPEPGKILPSIPI 139 (350)
Q Consensus 68 ~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~~r~~~~~~~~~~~Y~g-~cr~l~~~ee~~~~~ 139 (350)
.+|. .++.|+ +.+..++++++|.++|++|.. +|.+++-.. .......+. +| .|--+ .
T Consensus 97 ~~d~-~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l-~~~ev~~g~----~G~~c~~~---------~ 161 (524)
T 2x1l_A 97 SFDR-FIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFF-TENETTEQP----DGTRIATE---------T 161 (524)
T ss_dssp CCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEE-CGGGEEECT----TSCEEETT---------T
T ss_pred cCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccc-cHHHhccCC----CCCccccc---------c
Confidence 9995 667888 899999999999999999963 554431100 000000000 01 12101 1
Q ss_pred CCCceEE------EeCCCCCceeEEee----ee-ee--e----------ecCCCCCCCeEEEecC---CCc--------c
Q psy2381 140 NRKPVIR------FKNPLYGNITWNDL----IK-GK--I----------TISNKELDDLVIVRAD---GIP--------T 185 (350)
Q Consensus 140 ~~~~~~R------~k~~~~~~~~~~D~----v~-G~--~----------~~~~~~~~D~Vl~R~d---G~P--------t 185 (350)
|.+...| |+.+. |.|. +. +. + .+-...+.|+.|.|.. |.| .
T Consensus 162 g~~v~~~~~~qwF~~l~~-----~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~ 236 (524)
T 2x1l_A 162 GAPVTWTEEQTYFFRLSA-----YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVM 236 (524)
T ss_dssp CCBEEEEEEEEEEECGGG-----SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEE
T ss_pred CCcceEEecCCeEeeHHH-----HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEE
Confidence 2221111 22211 1110 00 00 0 0112457899999862 432 1
Q ss_pred chh-hhhh-----------h--c--ccCCCcEEEeCCCCCCCHHHHH---HHHHHhCCCCC-ceEeeceeecCCCceecc
Q psy2381 186 YNF-CAAI-----------D--D--WDMKITHVIRGDDHINNTPRQI---NILKALGVTLP-FYGHLPMVIDSNKVKISK 245 (350)
Q Consensus 186 Y~~-a~vV-----------D--D--~~~gIThvIRG~D~l~~t~~q~---~l~~aLg~~~P-~y~H~pll~~~~g~KLSK 245 (350)
|.+ ...+ + + ....++..+-|.|++. +.+. ....++|+++| .+.++++++. +|+||||
T Consensus 237 yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G~KMSK 313 (524)
T 2x1l_A 237 YVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RGEKMSK 313 (524)
T ss_dssp CHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEE-CSCSEET
T ss_pred EEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEe-CCcccCC
Confidence 111 1110 0 0 0124566677999862 3222 23456798877 3445588766 8999999
Q ss_pred CCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHH
Q psy2381 246 RKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFC 288 (350)
Q Consensus 246 R~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~ 288 (350)
|.|+ +++.++.+. +.++++|.|++..+-. ...-.++.+.+.
T Consensus 314 S~GN~v~p~d~i~~-~g~DalR~~ll~~~~~-~~d~~fs~~~l~ 355 (524)
T 2x1l_A 314 SIGNVVDPVNLVDT-FGLDQVRYFLLREVPF-GQDGSYNEDAII 355 (524)
T ss_dssp TTEESSCHHHHHHH-HCHHHHHHHHHHHSCT-TSCEEECHHHHH
T ss_pred cCCCCCCHHHHHHH-cChHHHHHHHHhcCCC-CCCCCcCHHHHH
Confidence 9996 799999987 8899999999985421 222235665554
No 29
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.68 E-value=2.8e-16 Score=163.69 Aligned_cols=198 Identities=21% Similarity=0.201 Sum_probs=136.3
Q ss_pred CCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCC-------------------------------C-c----
Q psy2381 9 APSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDT-------------------------------D-I---- 47 (350)
Q Consensus 9 APsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDt-------------------------------D-~---- 47 (350)
.|.|||+|||||+|++++-+.+||- +...++--|.|. + +
T Consensus 127 spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 206 (629)
T 2zue_A 127 SVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHA 206 (629)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHH
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccCcchhh
Confidence 6999999999999999998887773 344565566664 1 0
Q ss_pred ------------------------------------ccccHHHHHHHHHHHHHcCCCCCCCCeeecCC--HHHHHHHHHH
Q psy2381 48 ------------------------------------NRSTLSATQTIIDGMKWLGLNYDEGPFYQTKR--INRYFEIINY 89 (350)
Q Consensus 48 ------------------------------------~r~~~~~~~~i~~dL~wlGl~~de~~~~QS~r--~~~y~~~~~~ 89 (350)
+.....+.+.+.++++.||+.+|. ....|+. .+...+++++
T Consensus 207 ~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~-~~~es~~~~~~~v~~vi~~ 285 (629)
T 2zue_A 207 LGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDL-LVWESDIVRRKLFEIALEL 285 (629)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSE-EEEHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcccc-ccCcCccccchhHHHHHHH
Confidence 112355677889999999999986 4577776 6788999999
Q ss_pred HHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeeeeeecCC
Q psy2381 90 LLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKGKITISN 169 (350)
Q Consensus 90 L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G~~~~~~ 169 (350)
|.++|++|.|.- | .|+| ++-++.... | ..
T Consensus 286 L~~kG~~y~~~~---------------g---e~~G-------------------a~~v~~~~~----------g----~~ 314 (629)
T 2zue_A 286 LSKNENFYIPSD---------------G---KYRG-------------------AFVMDLRKL----------F----PD 314 (629)
T ss_dssp HHTSTTEECCSS---------------S---TTTT-------------------CEEEECTTT----------C----SS
T ss_pred HHHCCCcccccc---------------C---CcCC-------------------cEEEECccc----------C----Cc
Confidence 999999996410 0 1222 111222210 1 00
Q ss_pred CCCCCeEEEecCCCccch---hhhhhhc--------cc---------------------CCCcEEE--eCCCCCCCHHHH
Q psy2381 170 KELDDLVIVRADGIPTYN---FCAAIDD--------WD---------------------MKITHVI--RGDDHINNTPRQ 215 (350)
Q Consensus 170 ~~~~D~Vl~R~dG~PtY~---~a~vVDD--------~~---------------------~gIThvI--RG~D~l~~t~~q 215 (350)
..++..|+.|+||.++|. +|.+.+. .. .+.+|+| .|.||...-++-
T Consensus 315 ~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~~~~l 394 (629)
T 2zue_A 315 MKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAI 394 (629)
T ss_dssp SSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHHHHHH
T ss_pred cccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhHHHHH
Confidence 122347999999999995 4555552 11 1677775 788886555555
Q ss_pred HHHHHHhCCCC-C-ceEee--ceeecCCCceeccCCC--C-CCHHHHHHcC
Q psy2381 216 INILKALGVTL-P-FYGHL--PMVIDSNKVKISKRKE--A-TDIMYYKKKG 259 (350)
Q Consensus 216 ~~l~~aLg~~~-P-~y~H~--pll~~~~g~KLSKR~g--~-~~l~~l~~~G 259 (350)
..+.+++|++. + .+.|+ .++ +.+|.|||||.| + +++++|++++
T Consensus 395 ~~~l~~lG~~~~~~~~~h~~~g~V-~~~~~KMSkr~G~~n~v~l~dLl~e~ 444 (629)
T 2zue_A 395 KYALQLLGFEDAAANLYHLAYEHV-ERPEGKFSGRKGTWVGFTVDEVIQEA 444 (629)
T ss_dssp HHHHHHTTCHHHHHTEEEEEECCE-EBTTBCCCTTTTTTTTCBHHHHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEEEeeeE-EcCCCcccCCCCCCCeeeHHHHHHHH
Confidence 66668889965 3 57788 556 457889999999 6 7899999863
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.65 E-value=1.4e-16 Score=164.12 Aligned_cols=264 Identities=17% Similarity=0.103 Sum_probs=158.8
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHH-----cCCeEEEEecCCCcc-------------cccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH-----FNGIFILRIEDTDIN-------------RSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~-----~~G~~iLRieDtD~~-------------r~~~~~~~~i~~dL~wl 65 (350)
+++--.|+|||++||||+|++++.+.+||. ++..|+.-++|.+.+ ...+.+.+.+.+++++|
T Consensus 29 ~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~l 108 (564)
T 3kfl_A 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM 108 (564)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 466667899999999999999998888883 556788888887643 23577899999999999
Q ss_pred CCCCCCCCeeec--CCHHHHHHHHHHHHHCCceecc-----CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy2381 66 GLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYYC-----YSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIP 138 (350)
Q Consensus 66 Gl~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~C-----~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~ 138 (350)
||.+|. .++.+ ++.+..++++++|.++|++|.. +|..++-.. .+.....+ .+.+.+.|... . .
T Consensus 109 gi~~D~-~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l-~~~~~~~~-~~~~g~~c~~~-~------~ 178 (564)
T 3kfl_A 109 NYDMNY-FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFL-TAQNVADG-VDRDGKPCKVS-L------E 178 (564)
T ss_dssp TCCCSE-EEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEE-CGGGEEEE-ECTTSCEEEEE-T------T
T ss_pred CCCCCc-cccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCC-CHHHhccC-cCCCCCEeccc-c------C
Confidence 999996 34444 4789999999999999999975 555443100 00000000 00111223100 0 0
Q ss_pred CCCCceE------EEeCCCCCceeEEeeeeeee-----------------ecCCCCCCCeEEEe---cC---CC------
Q psy2381 139 INRKPVI------RFKNPLYGNITWNDLIKGKI-----------------TISNKELDDLVIVR---AD---GI------ 183 (350)
Q Consensus 139 ~~~~~~~------R~k~~~~~~~~~~D~v~G~~-----------------~~~~~~~~D~Vl~R---~d---G~------ 183 (350)
.|.+..+ -|+++. |.|.+.-.+ ++-...+.|++|-| ++ |.
T Consensus 179 ~g~~~~~~~~~~~f~~l~~-----~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~ 253 (564)
T 3kfl_A 179 SGHVVTWVEEENYMFRLSA-----FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDE 253 (564)
T ss_dssp TSCBCEEEEEEEEEECGGG-----GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE
T ss_pred CCCccEEEecceeEEEHHH-----HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCC
Confidence 1222222 233321 111110000 00012578999999 22 21
Q ss_pred -----------ccchhhhhh---hc---------c--cC--CCcEEEeCCCCCCCHHHHHH----HHHHhCCCCCc-eEe
Q psy2381 184 -----------PTYNFCAAI---DD---------W--DM--KITHVIRGDDHINNTPRQIN----ILKALGVTLPF-YGH 231 (350)
Q Consensus 184 -----------PtY~~a~vV---DD---------~--~~--gIThvIRG~D~l~~t~~q~~----l~~aLg~~~P~-y~H 231 (350)
.+| ++..- ++ . .. ..+.-+-|.|++. .|.. ++.++|+++|. ...
T Consensus 254 ~~v~yVWfDa~~~y-~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~---FH~~~wpa~L~a~g~~~~~~v~~ 329 (564)
T 3kfl_A 254 RHCIYVWLDALFNY-YTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILK---FHAIYWPAFLMSAELPLPERLVS 329 (564)
T ss_dssp EEEECHHHHHHTHH-HHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHH---HHHTHHHHHHHHTTCCCCSCEEE
T ss_pred CCEEEEeccCcHHH-HHHhCccccccccccchhcchhhhcCccceEEEeecccc---hHHHHHHHHHHhCCCCCCcEEEE
Confidence 122 22211 00 1 11 1123345888853 4443 34678998885 333
Q ss_pred eceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 232 LPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 232 ~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
++++ +.+|+|||||.|+ +++.++.++ +.++++|.||+..+- ....-.++.+.+++
T Consensus 330 hg~v-~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~~-~~~D~~fs~~~~~~ 385 (564)
T 3kfl_A 330 HGWW-TKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRESN-FQDDGDYSDKNMVA 385 (564)
T ss_dssp ECCE-EETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCC-SSCCEECCHHHHHH
T ss_pred cccE-eeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcCC-cccCCCCCHHHHHH
Confidence 4555 7899999999996 789999886 889999999998532 22233467777755
No 31
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.50 E-value=2.3e-13 Score=143.85 Aligned_cols=272 Identities=17% Similarity=0.145 Sum_probs=155.2
Q ss_pred ceEeeCCCCCCcCchhhHHH-HHHHHHHHHHc--CC---eEEEEecCCCcc-------------cccHHHHHHHHHHHHH
Q psy2381 4 VRTRFAPSPTGNLHIGGIRT-ALFSWAYARHF--NG---IFILRIEDTDIN-------------RSTLSATQTIIDGMKW 64 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rt-al~n~l~Ar~~--~G---~~iLRieDtD~~-------------r~~~~~~~~i~~dL~w 64 (350)
++|==.|+|||.+||||+++ ++..+.+||.+ .| .|+.-.|+.+.+ .-...+.+.+.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666799999999999998 89988888843 34 566666665432 3357789999999999
Q ss_pred cCCCCCCCCeeecC--CHHHHHHHHHHHHHCCceec-----cCCCHHHHHH-HHHHH---hhcCCCCCCCCCC---CC-C
Q psy2381 65 LGLNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY-----CYSSVEEIES-FRKKQ---RSFGEKPRYNRIW---RP-E 129 (350)
Q Consensus 65 lGl~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~-----C~cs~~~l~~-~r~~~---~~~~~~~~Y~g~c---r~-l 129 (350)
||+.||. .++.++ +.+..+++..+|.++|++|. -||++++-.. .+... ..++....|...| .. +
T Consensus 85 lgis~D~-~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l 163 (722)
T 1rqg_A 85 AKISFDF-FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPL 163 (722)
T ss_dssp HTCCCSE-EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCC
T ss_pred hCCCCCC-CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhccccc
Confidence 9999996 455443 67788889999999999997 3554442100 00000 0001111121122 11 2
Q ss_pred CCCCCCCC----CCCCCceEE------EeCCCCCceeEEeeeeeee---ecC-----------CCCCCCeEEEecC--C-
Q psy2381 130 PGKILPSI----PINRKPVIR------FKNPLYGNITWNDLIKGKI---TIS-----------NKELDDLVIVRAD--G- 182 (350)
Q Consensus 130 ~~~ee~~~----~~~~~~~~R------~k~~~~~~~~~~D~v~G~~---~~~-----------~~~~~D~Vl~R~d--G- 182 (350)
.+++... ..|.+..+| |+.+. |.|.+.-.+ .++ ...+.|+.|-|.- |
T Consensus 164 -~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~-----~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~ 237 (722)
T 1rqg_A 164 -TPEILINPRCAICGRPISFRDSAHYYIKMQD-----FAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGI 237 (722)
T ss_dssp -CTTSSBSCBCTTTCCBCEEEEEEEEEECGGG-----THHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSC
T ss_pred -ChhhccCCcccCCCcEeEEEEeccEEEEhHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCcc
Confidence 2233210 123333333 12211 111110000 011 2457899998842 2
Q ss_pred -Ccc----ch-----------h---hhh------------hhcccC----CCc--EEEeCCCCCCCHHHHHH----HHHH
Q psy2381 183 -IPT----YN-----------F---CAA------------IDDWDM----KIT--HVIRGDDHINNTPRQIN----ILKA 221 (350)
Q Consensus 183 -~Pt----Y~-----------~---a~v------------VDD~~~----gIT--hvIRG~D~l~~t~~q~~----l~~a 221 (350)
.|. ++ + +.. .+++.. ++. |++ |.|++. .|.. .+.+
T Consensus 238 piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~-GkDii~---fH~~~wpA~l~~ 313 (722)
T 1rqg_A 238 PVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI-GKDNIP---FHAIFWPAFLMA 313 (722)
T ss_dssp BCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEE-EGGGHH---HHHTHHHHHHHT
T ss_pred ccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEc-cccccc---cchhhhHHHHhc
Confidence 242 22 1 111 112221 222 333 788753 2321 2345
Q ss_pred hC----------CCCCc-eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHH
Q psy2381 222 LG----------VTLPF-YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCY 289 (350)
Q Consensus 222 Lg----------~~~P~-y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~ 289 (350)
+| |+.|. +.|+++++. +|+|||||.|+ ++..++.++ |.++++|.||+..+-. ...-.++.+++.+
T Consensus 314 ~~~~l~~d~~rg~~~Pk~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~-ygaDalR~~ll~~~~~-~~D~~fs~~~~~~ 390 (722)
T 1rqg_A 314 YGKYKDEEVEAEWNLPYDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDV-FPADYLRYYLTTIMPE-TRDSDFSFSDFKV 390 (722)
T ss_dssp TCCBCSSSCCBCBCCCSBCCEECCEEE-TTEECBTTTTBSCBHHHHTTT-SCHHHHHHHHHHTCCS-SSCEEECHHHHHH
T ss_pred cCCCcccccccCCCCCCEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHh-cCchHHHHHHHhcCCC-CCCCccCHHHHHH
Confidence 44 77784 677788766 99999999997 789999875 9999999999986422 2222356655533
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.45 E-value=8.8e-14 Score=142.23 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=73.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCc----------------ccccHHHHHHHHHHHHHc
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDI----------------NRSTLSATQTIIDGMKWL 65 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~----------------~r~~~~~~~~i~~dL~wl 65 (350)
++|==.|.|||.||||||+++++...++|.+ .|.=++-+.+||. ..-...+.+.+.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3454569999999999999999999999853 4655555677764 123577889999999999
Q ss_pred CCCCCCCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 66 GLNYDEGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 66 Gl~~de~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
|+.+|- .++.+ ++.+..+++..+|.++|++|.
T Consensus 92 gi~~D~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDY-FIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSE-EEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCc-CccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 999986 33333 456677788899999999997
No 33
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.44 E-value=2.2e-12 Score=124.94 Aligned_cols=234 Identities=18% Similarity=0.238 Sum_probs=159.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C----CcccccHHHHHHHHHHHHHcCCCCCCC-Ce
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----T----DINRSTLSATQTIIDGMKWLGLNYDEG-PF 74 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----t----D~~r~~~~~~~~i~~dL~wlGl~~de~-~~ 74 (350)
.++.....|||.|||||+..++.+|...+..|.+.++-|.| | |++ ...+....+..++.++|++++.- .+
T Consensus 13 ~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~-~~~~~~~~~~~~~lA~Gldp~k~~if 91 (340)
T 2g36_A 13 MRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVS-KLKEYTRDLVRGFLACGIDPEKSVIF 91 (340)
T ss_dssp CEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCT-THHHHHHHHHHHHHHTTCCTTTSEEE
T ss_pred CeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEE
Confidence 35666778889999999999999999999888999999999 6 555 46677778888999999999853 67
Q ss_pred eecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCc
Q psy2381 75 YQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGN 154 (350)
Q Consensus 75 ~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~ 154 (350)
.||+..+ |.+. ...+.|.++-.++.....-. . + ..|++..
T Consensus 92 ~qS~~~~-~~el-------~~~l~~~~~v~~l~r~~~~k-----------------~--~---------~~r~~~~---- 131 (340)
T 2g36_A 92 VQSGVKE-HAEL-------ALLFSMIVSVSRLERVPTYK-----------------E--I---------KSELNYK---- 131 (340)
T ss_dssp EGGGCTH-HHHH-------HHHHHTTSCHHHHHTCHHHH-----------------T--C--------------------
T ss_pred ECCchHH-HHHH-------HHHHHccCCHHHHHHhHHHH-----------------h--H---------HHHhccC----
Confidence 8999765 3332 23567999988875321100 0 0 0011100
Q ss_pred eeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCc
Q psy2381 155 ITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPF 228 (350)
Q Consensus 155 ~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~ 228 (350)
| .+ +-|..+|-.--+.|=...+.++|+.|.|...+....+.|.+.++ ++.|.
T Consensus 132 ----~-----------~~-------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~ 189 (340)
T 2g36_A 132 ----D-----------LS-------TAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPE 189 (340)
T ss_dssp ----C-----------CC-------SHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCE
T ss_pred ----C-----------CC-------ChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCch
Confidence 0 00 11345565555666666899999999999998888888888764 34565
Q ss_pred --eEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC---------CccccCHHHHHHhccccCC
Q psy2381 229 --YGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG---------NEEIFSIKQFCYWFNDCKY 296 (350)
Q Consensus 229 --y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~---------~~~~~~~~el~~~f~~~~~ 296 (350)
..|.|+|.+.+|+||||+.++ +.|.+ +|+.+..++... .+.+ +.+.-.+-++++.|. .
T Consensus 190 ~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~~a-~td~~~~~~~~~~~p~~~~v~~~~~~f~-~-- 259 (340)
T 2g36_A 190 AILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTILRM-MTDPARVRRSDPGNPENCPVWKYHQAFD-I-- 259 (340)
T ss_dssp EEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHHTC-CCCTTCSSTTSCCCGGGCHHHHHHHHTT-C--
T ss_pred hhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHHhC-CCCcccccccCCCCCchhHHHHHHHHHC-C--
Confidence 557899999999999999875 44442 799999999863 2221 223333445555554 1
Q ss_pred CCCCCCcccHHHHHHHHHHHhh
Q psy2381 297 LSKSPAQFNLKKLEWLNNFYIK 318 (350)
Q Consensus 297 i~~~~~~~d~~kL~~~n~~~i~ 318 (350)
+.+.+..+-++|-.
T Consensus 260 --------~~~~ieel~~~~~~ 273 (340)
T 2g36_A 260 --------SEEESKWVWEGCTT 273 (340)
T ss_dssp --------CHHHHHHHHHHHHT
T ss_pred --------CHhHHHHHHHHHhc
Confidence 55666666666665
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.31 E-value=9.1e-12 Score=121.69 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=167.7
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--c---ccHHHHHHHHHHHHHcCCCCCCC-C
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN--R---STLSATQTIIDGMKWLGLNYDEG-P 73 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~--r---~~~~~~~~i~~dL~wlGl~~de~-~ 73 (350)
+.+-|.| ||.||||| ..++.+|...+..|.+.++.|.| |+++ + ...+....+..++.++|++++.- .
T Consensus 38 iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i 114 (364)
T 2cya_A 38 GYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRF 114 (364)
T ss_dssp EEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEE
T ss_pred EEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4566766 58999999 99999999999999999999999 3331 3 45566778889999999999864 5
Q ss_pred eeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q psy2381 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYG 153 (350)
Q Consensus 74 ~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~ 153 (350)
+.||+.... ..+...++ .+.|.+|-.++.... .|-+ |...+ .
T Consensus 115 ~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~----------~~k~---------------------r~~~~--~ 156 (364)
T 2cya_A 115 VDAEELASD-KDYWGLVI----RVAKRASLARVRRAL----------TIMG---------------------RRAEE--A 156 (364)
T ss_dssp EEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC-------------------------------------CCG--G
T ss_pred Eecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCc----------hhhh---------------------hhcCC--C
Confidence 789986543 23344443 357888888874210 0100 00000 0
Q ss_pred ceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeec
Q psy2381 154 NITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLP 233 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~p 233 (350)
.+ +-|..+|-.--+.|-...+.++|+.|.|...+.-..+.+.+.+|.+.|...|.|
T Consensus 157 ~i------------------------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ 212 (364)
T 2cya_A 157 EV------------------------DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTP 212 (364)
T ss_dssp GS------------------------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEEC
T ss_pred Cc------------------------cchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeeccc
Confidence 00 225567776667777778999999999999999889999999999999999999
Q ss_pred eeecCC-----------------CceeccCC--CCCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccc
Q psy2381 234 MVIDSN-----------------KVKISKRK--EATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFND 293 (350)
Q Consensus 234 ll~~~~-----------------g~KLSKR~--g~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~ 293 (350)
+|.+.+ |+||||+. +++.|. -+|+.+...+... .+++ +.+.-.+-++++.|.
T Consensus 213 ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~------d~p~~i~~Ki~~a-~td~~~~~~~~v~~~~~~~~- 284 (364)
T 2cya_A 213 IISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV------DSDDDIRRKIRKA-YCPAKQVQGNPVLEIARYIL- 284 (364)
T ss_dssp CCBCSSCC----------------CBCCSSSGGGSCBTT------CCHHHHHHHHHTS-CCCTTCCTTCHHHHHHHHTT-
T ss_pred eeeCCCcccccccccccccccccccccCCCCCCCEeecc------CCHHHHHHHHHhC-cCCCCCCCCCcHHHHHHHHh-
Confidence 999988 79999995 345554 2599999999762 2221 112223445666655
Q ss_pred cCCCCC---------CCCcccHHHHHHHHHHHhhc-CCHHHHHHHHHH
Q psy2381 294 CKYLSK---------SPAQFNLKKLEWLNNFYIKS-YDDKKLLNLIQP 331 (350)
Q Consensus 294 ~~~i~~---------~~~~~d~~kL~~~n~~~i~~-~~~~~~~~~~~~ 331 (350)
...-.+ ....++.+.+..+-+.|-.. +.+.++.+.+..
T Consensus 285 f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~ 332 (364)
T 2cya_A 285 FARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAE 332 (364)
T ss_dssp TTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 322221 11123334555555666654 566666555543
No 35
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.25 E-value=1.2e-10 Score=112.59 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=136.1
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcC-CeEEEEecC----CCc---c-cccHHHHHHHHHHHHHcCCCCCCC-C
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFN-GIFILRIED----TDI---N-RSTLSATQTIIDGMKWLGLNYDEG-P 73 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~-G~~iLRieD----tD~---~-r~~~~~~~~i~~dL~wlGl~~de~-~ 73 (350)
|.+=|- |||.|||||+..++.+|...+..| .+.++-|.| |.+ . ....+....+..++.++|++++.- .
T Consensus 4 vy~G~~--PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 4 VLSGIQ--PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp EEEEEC--SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 334444 558999999999999999877777 678888888 322 1 245667778888999999999853 6
Q ss_pred eeecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q psy2381 74 FYQTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYG 153 (350)
Q Consensus 74 ~~QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~ 153 (350)
+.||+..+ +.+.+ ..+.|.++-.+|+....-... + ..+ +
T Consensus 82 ~~qS~~~~-~~el~-------~~l~~~~~~~~l~r~~~~k~r------~--------~~~------------------~- 120 (337)
T 2el7_A 82 FVQSHVPE-HTELS-------WVFTTLTPLGDLTRMTQFKDK------A--------SKQ------------------E- 120 (337)
T ss_dssp EEGGGSTH-HHHHH-------HHHHHTSBHHHHHTSHHHHHH------T--------TSS------------------S-
T ss_pred EEcCcchh-hHHHH-------HHHHccCCHHHHHHhHHHHHH------h--------ccC------------------C-
Confidence 78999775 33333 236788888887532111000 0 000 0
Q ss_pred ceeEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHh----C--CCCC
Q psy2381 154 NITWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL----G--VTLP 227 (350)
Q Consensus 154 ~~~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aL----g--~~~P 227 (350)
.+ +-|..+|-.--+.|=...+.++|+.|.|...+....+.|.+.+ | +..|
T Consensus 121 ~~------------------------~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P 176 (337)
T 2el7_A 121 TV------------------------WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP 176 (337)
T ss_dssp CC------------------------BHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CC------------------------ChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC
Confidence 00 1134556555556656689999999999999988888888765 5 5778
Q ss_pred ceEee---ceeecCCC-ceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 228 FYGHL---PMVIDSNK-VKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 228 ~y~H~---pll~~~~g-~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
...|. |+|.+.+| +||||+.++ +.|. -+|+.+..++..
T Consensus 177 ~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~------d~p~~i~~Ki~~ 219 (337)
T 2el7_A 177 QALLNPEAPRVPGIDGKAKMSKSLGNTIGLL------EPEESIWQKIQH 219 (337)
T ss_dssp EEECCTTSCCCBCTTSSSBCCTTTTCCCBSS------SCHHHHHHHHHT
T ss_pred eeecccccccccCCCCccccCCCCCCeeeCc------CCHHHHHHHHHh
Confidence 88777 89999999 999999886 3333 248889888876
No 36
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.21 E-value=2.8e-10 Score=109.01 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=154.6
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-C--cccccHHHHHHHHHHHHHcCCCCCCCCeee
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----T-D--INRSTLSATQTIIDGMKWLGLNYDEGPFYQ 76 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----t-D--~~r~~~~~~~~i~~dL~wlGl~~de~~~~Q 76 (350)
+.+.|.| ||.||||| ..++.+|...+..|.+.++.|-| | | +.+...+....+..++.++|++ .. .+.|
T Consensus 31 vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~-~~~q 105 (314)
T 2zp1_A 31 AYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AK-YVYG 105 (314)
T ss_dssp EEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CE-EEEG
T ss_pred EEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eE-EEEC
Confidence 5678888 58999999 99999999999999999998866 2 2 2355677888999999999998 43 6679
Q ss_pred cCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCcee
Q psy2381 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNIT 156 (350)
Q Consensus 77 S~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~ 156 (350)
|+.... ..+.+.++ .+.|.+|..++..... .+. . ..+ +
T Consensus 106 s~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~~---------~~~-----~-~~~------------------~---- 143 (314)
T 2zp1_A 106 SEFQLD-KDYTLNVY----RLALKTTLKRARRSME---------LIA-----R-EDE------------------N---- 143 (314)
T ss_dssp GGTTTS-HHHHHHHH----HHHHHSCHHHHHHHTT---------TTS-----C-CCS------------------S----
T ss_pred Chhhcc-hHHHHHHH----HHHCcCcHHHHhccch---------hhh-----h-ccC------------------C----
Confidence 998754 34455554 4678899998864310 110 0 000 0
Q ss_pred EEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceee
Q psy2381 157 WNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVI 236 (350)
Q Consensus 157 ~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~ 236 (350)
. +-|..+|-.--+.|=...+.++|+.|.|...+. .+-+-+.-+.|...|.|+|.
T Consensus 144 -------------~---------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~----~l~R~i~~~~~~~~~~~~l~ 197 (314)
T 2zp1_A 144 -------------P---------KVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH----MLARELLPKKVVCIHNPVLT 197 (314)
T ss_dssp -------------C---------CTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH----HHHHHHSSSCCEEEEECCCB
T ss_pred -------------C---------CchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH----HHHHHhcCCCcEEeeccccc
Confidence 0 113345554445555556899999999996544 23333443678889999999
Q ss_pred cCCC-ceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHHHHHHhccccCCC--C---CCCCcccHHH
Q psy2381 237 DSNK-VKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIKQFCYWFNDCKYL--S---KSPAQFNLKK 308 (350)
Q Consensus 237 ~~~g-~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~el~~~f~~~~~i--~---~~~~~~d~~k 308 (350)
+.+| +||||+.++ +.|. -+|+.|+.=+... .+++ ..+.-++=++++.|. ..++ - +-...++...
T Consensus 198 ~l~G~~KMSKS~~~~I~L~------d~~~~i~~KI~~a-~td~~~~~~~~~~~~~~~~~-~~~~~i~r~~k~g~~~~~~~ 269 (314)
T 2zp1_A 198 GLDGEGKMSSSKGNFIAVD------DSPEEIRAKIKKA-YCPAGVVEGNPIMEIAKYFL-EYPLTIKRPEKFGGDLTVNS 269 (314)
T ss_dssp CTTSSSBCCTTTTCSCBTT------CCHHHHHHHHHHS-CCCTTCCTTCHHHHHHHHHC-CSSEEECCCGGGTCCEEESS
T ss_pred cCCcccccCCCCcceecCC------CCHHHHHHHHHhC-CCCCCCCCCCcHHHHHHHHh-cCCcceeehhhccCCCCcCC
Confidence 9999 799999654 4444 3688888888762 2222 122222334455442 1100 0 0011222334
Q ss_pred HHHHHHHHhhc-CCHHHHHHHHHH
Q psy2381 309 LEWLNNFYIKS-YDDKKLLNLIQP 331 (350)
Q Consensus 309 L~~~n~~~i~~-~~~~~~~~~~~~ 331 (350)
+..+.+.|-.. +.+.++.+.+..
T Consensus 270 ~eei~~~~~~g~~~~~~~K~~la~ 293 (314)
T 2zp1_A 270 YEELESLFKNKELHPMYLKNAVAE 293 (314)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44555666543 566666555543
No 37
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.20 E-value=5.7e-11 Score=115.36 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=134.0
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-------CCcccccHHHHHHHHHHHHHcCCCCCC-CCeeecCCHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED-------TDINRSTLSATQTIIDGMKWLGLNYDE-GPFYQTKRINR 82 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD-------tD~~r~~~~~~~~i~~dL~wlGl~~de-~~~~QS~r~~~ 82 (350)
.|||.|||||...++.+|...+. +...++.|.| .|++ ...+....+..++.++||+++. ..+.||+..+
T Consensus 12 ~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~- 88 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLE- 88 (348)
T ss_dssp CCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCHH-
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEECCcccc-
Confidence 35699999999999999987776 7889999999 4554 5556677888999999999985 2678999876
Q ss_pred HHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeee
Q psy2381 83 YFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIK 162 (350)
Q Consensus 83 y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~ 162 (350)
+.+.. +.+.|.++..+++.+.. |....... + | .|+|
T Consensus 89 ~~el~-------w~l~~~~~~~~l~R~~~----------~k~~~~~~----------~------~--------~~~~--- 124 (348)
T 2yy5_A 89 HSMMG-------YLMMVQSNLGELQRMTQ----------FKAKKAEQ----------T------R--------NPNG--- 124 (348)
T ss_dssp HHHHH-------HHHHHHSBHHHHHHCHH----------HHTTC------------------------------------
T ss_pred hhHHH-------HHHHhhccHHHHhchHH----------HHHHHHhh----------c------c--------cccc---
Confidence 33322 22358888888865421 10000000 0 0 0111
Q ss_pred eeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCceEe---ec
Q psy2381 163 GKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYGH---LP 233 (350)
Q Consensus 163 G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~y~H---~p 233 (350)
.|-+ +-|..+|-.--+.|-...+.++|+.|.|...+....+.|.+.++ ++.|...| .|
T Consensus 125 ----------~~~~---~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~ 191 (348)
T 2yy5_A 125 ----------TLNI---PTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTN 191 (348)
T ss_dssp ------------CC---BTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTT
T ss_pred ----------CCCC---ChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccc
Confidence 0000 22455666555666667899999999999998888888888875 66788887 58
Q ss_pred eeecCCC--ceeccCCCCC--CHHHHHHcCCCHHHHHHHHHH
Q psy2381 234 MVIDSNK--VKISKRKEAT--DIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 234 ll~~~~g--~KLSKR~g~~--~l~~l~~~G~~peal~~~l~~ 271 (350)
+|.+-+| +||||+.++. +| +|- -+|+.|..=+..
T Consensus 192 ~l~gL~g~~~KMSKS~~n~~~~I-~L~---D~~~~i~~KI~~ 229 (348)
T 2yy5_A 192 RIMDLFDPTKKMSKSSKNQNGVI-YLD---DPKEVVVKKIRQ 229 (348)
T ss_dssp TCBCSSCTTSBCCSSCSCGGGCC-BTT---CCHHHHHHHHHT
T ss_pred cccCCCCcchhcCCCCCCCCceE-eec---CCHHHHHHHHHh
Confidence 8888888 8999999872 22 111 357777776665
No 38
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.19 E-value=1.1e-10 Score=113.39 Aligned_cols=244 Identities=16% Similarity=0.171 Sum_probs=154.3
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecCCC------cccccHHHHHHHHHHHHHcCCCCCCC-Ceee
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIEDTD------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQ 76 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD------~~r~~~~~~~~i~~dL~wlGl~~de~-~~~Q 76 (350)
+.+.|.| ||.|||||+..++.+|...+.....+++.-|.+. ......+....+..++.++|++++.- .+.|
T Consensus 25 vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~q 102 (351)
T 1yi8_B 25 VLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQ 102 (351)
T ss_dssp EEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEEEG
T ss_pred EEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEEc
Confidence 5677877 5899999999999999766655455666544431 12345667778889999999999853 5789
Q ss_pred cCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCcee
Q psy2381 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNIT 156 (350)
Q Consensus 77 S~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~ 156 (350)
|+..+ |.+. .+.|.|.++-.+|..+...+... .. .+
T Consensus 103 S~~~~-~~el-------~~~l~~~~~v~~l~r~~~~k~~~--------------~~------~~---------------- 138 (351)
T 1yi8_B 103 SAVPE-LAEL-------TVYFLNLVTVSHLRQNPTVKAEI--------------AQ------KG---------------- 138 (351)
T ss_dssp GGCTH-HHHH-------HHHHHTTSBHHHHHTCHHHHHHH--------------HH------HT----------------
T ss_pred Cchhh-HHHH-------HHHHhccCCHHHHHhhhHHHHHH--------------hh------cC----------------
Confidence 99765 3332 24677999988885321110000 00 00
Q ss_pred EEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHh----C--CCCCc--
Q psy2381 157 WNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKAL----G--VTLPF-- 228 (350)
Q Consensus 157 ~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aL----g--~~~P~-- 228 (350)
| . ..+ +-|..+|-.--+.|-...+.++|+.|.|...+....+.|.+.+ | ++.|.
T Consensus 139 f----------~-~~~-------~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 139 Y----------G-ERV-------PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp C----------T-TCC-------BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred C----------C-CCC-------chHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 0 0 000 1134566655566666689999999999999988888888765 4 45665
Q ss_pred eEeeceeecCCCc-eeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC---------CccccCHHHHHHhccccCCC
Q psy2381 229 YGHLPMVIDSNKV-KISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG---------NEEIFSIKQFCYWFNDCKYL 297 (350)
Q Consensus 229 y~H~pll~~~~g~-KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~---------~~~~~~~~el~~~f~~~~~i 297 (350)
+.|.|+|.+.+|+ ||||+.++ +.|. -+|+.+..++... .+++ +.+..++-+++..|.
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n~I~L~------d~p~~i~~Ki~~a-~td~~~~~~~~~~~~~~~~~~~~l~~~~----- 268 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGNAIALG------DSADEVARKVMGM-YTDPGHLRASDPGRVEGNPVFTFLDAFD----- 268 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTCCCBTT------CCHHHHHHHHHTC-CCCTTCCSTTSCCCCTTCTTHHHHHHHC-----
T ss_pred eecCccccCCCCccccCCCCCCeecCC------CCHHHHHHHHHhc-CCCcccccccCCCCCccchHHHHHHHHc-----
Confidence 3367999999997 99999886 3333 2499999999862 2221 222234445555554
Q ss_pred CCCCCcccHHHHHHHHHHHhh-cCCHHHHHHHH
Q psy2381 298 SKSPAQFNLKKLEWLNNFYIK-SYDDKKLLNLI 329 (350)
Q Consensus 298 ~~~~~~~d~~kL~~~n~~~i~-~~~~~~~~~~~ 329 (350)
++.+.+..+-++|-. .+.+.++.+.+
T Consensus 269 ------~~~~~ieel~~~~~~g~~~~~~~K~~L 295 (351)
T 1yi8_B 269 ------PDPARVQALKDQYRAGGLGDVKVKKHL 295 (351)
T ss_dssp ------SCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ------CChhHHHHHHHHHHcCCCCHHHHHHHH
Confidence 155555666666655 34444444433
No 39
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.17 E-value=3.6e-10 Score=108.89 Aligned_cols=196 Identities=17% Similarity=0.157 Sum_probs=134.2
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cccHHHHHHHHHHHHHcCCCCCCC-Ceee
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN--RSTLSATQTIIDGMKWLGLNYDEG-PFYQ 76 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~--r~~~~~~~~i~~dL~wlGl~~de~-~~~Q 76 (350)
|.+=|- |||.|||||+..++.+|...+. |...++-|.| |++. ....+....+..++.++|++++.. .+.|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 344444 5599999999999999998765 8889999999 7421 245566778889999999999853 6789
Q ss_pred cCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCcee
Q psy2381 77 TKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNIT 156 (350)
Q Consensus 77 S~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~ 156 (350)
|+..+ +.+.. +.+.|.++-.+++.+..-.
T Consensus 81 S~~~~-~~~l~-------w~l~~~~~~~~l~r~~~~k------------------------------------------- 109 (328)
T 1i6k_A 81 SEVPA-HAQAA-------WMLQCIVYIGELERMTQFK------------------------------------------- 109 (328)
T ss_dssp GGCTH-HHHHH-------HHHHHHSCHHHHHTCHHHH-------------------------------------------
T ss_pred Cchhh-hhHHH-------HHHhccccHHHHHHHHHHH-------------------------------------------
Confidence 99865 33322 2334788887775432100
Q ss_pred EEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCceE
Q psy2381 157 WNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPFYG 230 (350)
Q Consensus 157 ~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~y~ 230 (350)
|.+. .. |-+ +-|..+|-.--+.|=...+.++|+.|.|...+....+.|.+.+| +..|...
T Consensus 110 --~~~~------~~---~~~---~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~l 175 (328)
T 1i6k_A 110 --EKSA------GK---EAV---SAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEAR 175 (328)
T ss_dssp --HHHT------TC---SSC---CHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEE
T ss_pred --HHHh------cc---CCC---CchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeee
Confidence 0000 00 000 11344565555566566899999999999998888888888876 4567655
Q ss_pred ---eeceeecCCC--ceeccCCCCCC--HHHHHHcCCCHHHHHHHHHH
Q psy2381 231 ---HLPMVIDSNK--VKISKRKEATD--IMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 231 ---H~pll~~~~g--~KLSKR~g~~~--l~~l~~~G~~peal~~~l~~ 271 (350)
|.|+|.+-+| +||||+.++.+ | +|- -+|+.|..=+..
T Consensus 176 i~~~~~~l~gl~G~~~KMSKS~~n~~~~I-~L~---d~~~~i~~KI~~ 219 (328)
T 1i6k_A 176 IPKVGARIMSLVDPTKKMSKSDPNPKAYI-TLL---DDAKTIEKKIKS 219 (328)
T ss_dssp CCSSSSSCBCSSCTTSBCCTTCSCGGGCC-BTT---CCHHHHHHHHHH
T ss_pred eccccccccCCCCCccCCCCCCCCcCcee-eec---CCHHHHHHHHHh
Confidence 4699999989 99999998722 2 221 368888887776
No 40
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=98.87 E-value=2.4e-08 Score=95.94 Aligned_cols=235 Identities=16% Similarity=0.178 Sum_probs=142.8
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-Cc-ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----T-DI-NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----t-D~-~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.|||||+..++.+|..-+. |...++-|-| | |+ .....+....+..++..+|++++.- .+.||+-.+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 57799999999999988876555 6555555555 2 22 1234566777888888999999863 578999765 3
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeee
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G 163 (350)
.+.+- .+.|.++-.++..+...+..-+ . + . .+
T Consensus 89 ~el~~-------~l~~~~~~~~l~r~~~~K~~~~-------------~--------~----------~--~~-------- 120 (322)
T 3tzl_A 89 MELYW-------ILSQFTPMGLLERAHSYKDKVA-------------K--------G----------L--SA-------- 120 (322)
T ss_dssp HHHHH-------HHGGGCBHHHHHSCHHHHHHHH-------------T--------T----------C--CC--------
T ss_pred HHHHH-------HHhccCcHHHHHhhhHHHHHHc-------------c--------C----------C--CC--------
Confidence 33322 2458888887753211000000 0 0 0 00
Q ss_pred eeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCC------CCCceEe---ece
Q psy2381 164 KITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV------TLPFYGH---LPM 234 (350)
Q Consensus 164 ~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~------~~P~y~H---~pl 234 (350)
+-|..+|-.--+.|=...+.++|..|.|-..+--.=+.|.+.++. +.|.-.| .|+
T Consensus 121 ----------------~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~ 184 (322)
T 3tzl_A 121 ----------------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAV 184 (322)
T ss_dssp ----------------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCC
T ss_pred ----------------chHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhcccccc
Confidence 114456665556666668899999999986655444555555542 4565444 799
Q ss_pred eecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCC-------CccccCHHHHHHhccccCCCCCCCCcccH
Q psy2381 235 VIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHG-------NEEIFSIKQFCYWFNDCKYLSKSPAQFNL 306 (350)
Q Consensus 235 l~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~-------~~~~~~~~el~~~f~~~~~i~~~~~~~d~ 306 (350)
|.+-+|+||||+.++ +.|. -+|+.|...+... .+++ +.+. ..+++.+. . + .+.
T Consensus 185 l~~l~G~KMSKS~~n~I~L~------d~p~~i~~KI~~a-~td~~~~~~~~~~~~---~~v~~~~~-~--~------~~~ 245 (322)
T 3tzl_A 185 VVGTDGAKMSKSYQNTIDIF------SSEKTLKKQISSI-VTDSTALEDPKDHEN---CNIFKIAK-L--F------LDE 245 (322)
T ss_dssp CBCTTSSBCCGGGTCCCBSS------CCHHHHHHHHHTC-CCCCCCTTSCCCGGG---CHHHHHHG-G--G------CCH
T ss_pred ccCCCCCcCCCCCCCceecC------CCHHHHHHHHHhc-cCCCccccCCCCCcc---hhHHHHHH-H--h------CCh
Confidence 999999999999875 4443 2799999998763 2211 1111 22333333 1 0 145
Q ss_pred HHHHHHHHHHhh-cCCHHHHHHHHH
Q psy2381 307 KKLEWLNNFYIK-SYDDKKLLNLIQ 330 (350)
Q Consensus 307 ~kL~~~n~~~i~-~~~~~~~~~~~~ 330 (350)
+.+..+-++|-. .+.+.++.+.+.
T Consensus 246 ~~i~~l~~~~~~g~~~~~~~K~~la 270 (322)
T 3tzl_A 246 SGQKELQIRYEKGGEGYGHFKIYLN 270 (322)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 667777666654 456655555444
No 41
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=98.55 E-value=1.6e-06 Score=85.23 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=117.0
Q ss_pred CCCCcCchhhHHHHH-HHHHHHHHcCCeEEEEecCC-----Cc---ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCH
Q psy2381 11 SPTGNLHIGGIRTAL-FSWAYARHFNGIFILRIEDT-----DI---NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRI 80 (350)
Q Consensus 11 sPtG~lHiG~~rtal-~n~l~Ar~~~G~~iLRieDt-----D~---~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~ 80 (350)
.|||.|||||...++ .+|+ -...|...++=|-|. ++ .....+....+..++..+|++++.- .+.||+-.
T Consensus 81 ~PTG~lHLGh~v~~~~~~~l-Q~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 81 GPSGPMHIGHIIPFFATKWL-QEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCSSCCBHHHHHHHHHHHHH-HHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST
T ss_pred CCCCchhHHHHHHHHHHHHH-HHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH
Confidence 356999999999995 7884 344666555544451 21 2345566667888888899998863 57899988
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
+ |.+.+-.|- |..|-.++.... + | . + + +
T Consensus 160 ~-~~~~~~~l~-------~~~t~~~~~~~~------~----~--------~--~-----~--------------~----- 187 (392)
T 3jxe_A 160 K-IYEMAIPIA-------KKINFSMAKAVF------G----F--------T--E-----Q--------------S----- 187 (392)
T ss_dssp H-HHHHHHHHH-------HHSBHHHHHHHH------C----C--------C--T-----T--------------S-----
T ss_pred H-HHHHHHHHH-------hhCCHHHHhhhh------c----c--------C--C-----C--------------C-----
Confidence 8 655555553 555666653320 0 1 0 0 0 0
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccC-CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCC
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDM-KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSN 239 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~-gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~ 239 (350)
+-|..+|-.--+.|-... .-++|..|.|-..+--.-.-+.+.+|.+.|.-.|.|+|.+-+
T Consensus 188 -------------------~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLd 248 (392)
T 3jxe_A 188 -------------------KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLT 248 (392)
T ss_dssp -------------------BHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCSS
T ss_pred -------------------chHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecccccCCC
Confidence 012334443334443334 357888999997665555666678898889888999999988
Q ss_pred C--ceeccCCCC--CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 240 K--VKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 240 g--~KLSKR~g~--~~l~~l~~~G~~peal~~~l~~ 271 (350)
| +||||+.++ +.|. -+|+.|..=+..
T Consensus 249 G~~~KMSKS~~ns~I~L~------D~p~~I~kKI~k 278 (392)
T 3jxe_A 249 SLSGKMSASKPETAIYLT------DSPEDVEKKVWK 278 (392)
T ss_dssp CSSSCCCTTSGGGCCBTT------CCHHHHHHHHHT
T ss_pred CCccccccCCCCCeeeCC------CCHHHHHHHHHh
Confidence 8 599999965 3332 356666665554
No 42
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=98.40 E-value=7.6e-06 Score=81.41 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=74.1
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC--ceeccCCCC--CCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 197 MKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~peal~~~l~~l 272 (350)
.+.++|..|.|-..+.-.=.-|.+.+|++.|...|.|+|.+.+| +||||+.++ +.|. =+|+.|..-+...
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~~KI~~y 321 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMT------DTPKQIQKKINKY 321 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTT------CCHHHHHHHHHHH
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEecc------CCHHHHHHHhhhh
Confidence 35789999999988776667778899998898899999999999 999999865 4444 3578887777763
Q ss_pred CCCCCC------------ccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhc-CCHHHHHHHHHH
Q psy2381 273 GWSHGN------------EEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS-YDDKKLLNLIQP 331 (350)
Q Consensus 273 G~~~~~------------~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~-~~~~~~~~~~~~ 331 (350)
-.+.+. .+.-.+-.+++.|. .+.+++..+-++|-.. +.+.++.+.|..
T Consensus 322 A~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~-----------~~~~eieel~~~~~~G~~~~~~~K~~La~ 382 (432)
T 2ip1_A 322 AFSGGQVSADLHRELGGNPDVDVAYQYLSFFK-----------DDDVFLKECYDKYKSGELLSGEMKKLCIE 382 (432)
T ss_dssp SCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHC-----------CCHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cccCCccchhhccccCCCchHHHHHHHHHHHC-----------CCHhHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 333210 11112223344332 2567777777777764 666666555543
No 43
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=98.40 E-value=2.1e-06 Score=83.99 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=147.5
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----C-Ccc-cc---cHHHH-HHHH----HHHHHcCCCCCCC-Cee
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----T-DIN-RS---TLSAT-QTII----DGMKWLGLNYDEG-PFY 75 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----t-D~~-r~---~~~~~-~~i~----~dL~wlGl~~de~-~~~ 75 (350)
.|||.|||||...++.+|..-+..|...++=|-| | |+. +. ..+.. ..+. .++..+|++++.- .+.
T Consensus 41 ~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~ 120 (375)
T 2cyc_A 41 EISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVL 120 (375)
T ss_dssp CCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEE
T ss_pred CCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4669999999666888888888877776666666 2 321 22 22333 4444 7788999998863 578
Q ss_pred ecCCHHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCce
Q psy2381 76 QTKRINRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNI 155 (350)
Q Consensus 76 QS~r~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~ 155 (350)
||+-.+.. .+..-+.. +.|.++-.++...- .|-+ . . .
T Consensus 121 qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~~~----------~~k~----r-~------------------~----- 157 (375)
T 2cyc_A 121 ASEILEKG-DYWQTVID----ISKNVTLSRVMRSI----------TIMG----R-Q------------------M----- 157 (375)
T ss_dssp THHHHTBH-HHHHHHHH----HHTTSBHHHHHHTG----------GGGT----C-C------------------C-----
T ss_pred cchhhhhh-HHHHHHHH----HhceeEHHHHhccc----------hhhh----h-c------------------c-----
Confidence 98744322 22222222 23445555553210 0100 0 0 0
Q ss_pred eEEeeeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCC--------C-C
Q psy2381 156 TWNDLIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGV--------T-L 226 (350)
Q Consensus 156 ~~~D~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~--------~-~ 226 (350)
+|-+ +-|..+|-.--+.|=...+.++|..|.|-..+.-.=+.+.+.+|. . .
T Consensus 158 -----------------~~~i---~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~ 217 (375)
T 2cyc_A 158 -----------------GEAI---DFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLK 217 (375)
T ss_dssp -----------------CTTC---BTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEEC
T ss_pred -----------------CCCC---ChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCc
Confidence 0000 124556666666677778999999999997666555666677776 3 6
Q ss_pred CceEeeceeecCCC------------------ceeccCCC--CCCHHHHHHcCCCHHHHHHHHHHhCCCCC-CccccCHH
Q psy2381 227 PFYGHLPMVIDSNK------------------VKISKRKE--ATDIMYYKKKGFLPEAILNYLARLGWSHG-NEEIFSIK 285 (350)
Q Consensus 227 P~y~H~pll~~~~g------------------~KLSKR~g--~~~l~~l~~~G~~peal~~~l~~lG~~~~-~~~~~~~~ 285 (350)
|...|.|+|.+-+| +||||+.. ++.|. -+|+.|...+... .+++ +.+.-.+-
T Consensus 218 ~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~------d~p~~i~~KI~~A-~t~~~~~~~~~v~ 290 (375)
T 2cyc_A 218 PVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIH------DSPEEIRQKLRKA-FCPAREVRYNPVL 290 (375)
T ss_dssp CEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTT------CCHHHHHHHHHHS-CCCTTCCSSCHHH
T ss_pred cEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccC------CCHHHHHHHHHHh-cCCCCCCCCChHH
Confidence 77788999999988 89999983 35554 3599999999873 3332 12222233
Q ss_pred HHHHhccccCCCCC---------CCCcccHHHHHHHHHHHhhc-CCHHHHHHHHHH
Q psy2381 286 QFCYWFNDCKYLSK---------SPAQFNLKKLEWLNNFYIKS-YDDKKLLNLIQP 331 (350)
Q Consensus 286 el~~~f~~~~~i~~---------~~~~~d~~kL~~~n~~~i~~-~~~~~~~~~~~~ 331 (350)
++++.|. ...-.. ....++.+.+..+-++|-.. +.+.++.+.+..
T Consensus 291 ~~~~~~~-f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~ 345 (375)
T 2cyc_A 291 DWVEYII-FREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAE 345 (375)
T ss_dssp HHHHHTT-TSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5566654 222111 01122344455666677664 666666665543
No 44
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=98.39 E-value=2.7e-06 Score=83.49 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=112.3
Q ss_pred CCCCcCchhhHHHH-HHHHHHHHHcCCeEEEEecCCC-------cccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHH
Q psy2381 11 SPTGNLHIGGIRTA-LFSWAYARHFNGIFILRIEDTD-------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRIN 81 (350)
Q Consensus 11 sPtG~lHiG~~rta-l~n~l~Ar~~~G~~iLRieDtD-------~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~ 81 (350)
-|||.|||||+..+ +.+| +-+..|..+++=|.|.. +.....+.......++-.+|++++.- .+.||+-.+
T Consensus 90 ~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~ 168 (386)
T 3hzr_A 90 YPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG 168 (386)
T ss_dssp CCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH
Confidence 58899999999999 7888 44445666666687731 12234455556777888899998753 467888665
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeee
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v 161 (350)
.|...+-+|-.. . +-.++ . .+| | . + + .+.
T Consensus 169 ~~~~~~~~l~r~-~------t~~~~---------~---~~~-~----~-~--~-------------------~~~----- 197 (386)
T 3hzr_A 169 KMYRTISLVEKA-T------AYNVV---------Q---PFF-N----F-E--Y-------------------SDN----- 197 (386)
T ss_dssp HHHHHHHHHHHH-C------BHHHH---------T---TTS-C----C-C--S-------------------SSB-----
T ss_pred HHHHHHHHHHhh-c------cHHHH---------H---HHh-C----C-C--C-------------------CCc-----
Confidence 232222222110 0 00110 0 001 0 0 0 0 000
Q ss_pred eeeeecCCCCCCCeEEEecCCCccchhhhhh----hcccCC--CcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeecee
Q psy2381 162 KGKITISNKELDDLVIVRADGIPTYNFCAAI----DDWDMK--ITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMV 235 (350)
Q Consensus 162 ~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vV----DD~~~g--IThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll 235 (350)
.|.+ .||.-+-|..+ +|.+.. -++|-.|.|-..+--.-..+.+.+|.+.|...|.|+|
T Consensus 198 ~g~f----------------~YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l 261 (386)
T 3hzr_A 198 IGKL----------------ASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMV 261 (386)
T ss_dssp HHHH----------------HHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCC
T ss_pred hhhH----------------hhHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCCCCceEeecCee
Confidence 0111 02222322222 355432 4566679998776666677778899988988899999
Q ss_pred ecCCCc-eeccCC-C-CCCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 236 IDSNKV-KISKRK-E-ATDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 236 ~~~~g~-KLSKR~-g-~~~l~~l~~~G~~peal~~~l~~lG 273 (350)
.+-+|. ||||++ + ++.|. -+|+.|..-+....
T Consensus 262 ~gLdG~~KMSKSd~~~~I~L~------D~p~~i~kKI~k~A 296 (386)
T 3hzr_A 262 PLLSGVTKFDIPSDHNSILLS------DNAKQVERKINKLA 296 (386)
T ss_dssp CCTTCTTCCCCCCTTTSCBTT------CCHHHHHHHHHHTS
T ss_pred eCCCCCCccCcCCCCCeeecC------CCHHHHHHHHHHhc
Confidence 998995 999994 3 35554 27888888887753
No 45
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=98.35 E-value=1.4e-06 Score=86.71 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCc-eeccCCCC-CCHHHHHHcC
Q psy2381 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKV-KISKRKEA-TDIMYYKKKG 259 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~-KLSKR~g~-~~l~~l~~~G 259 (350)
|..+|-+--+.|=...+.++++.|.|...|.-.-+.|.+.+|..+|...+.|+|.+.+|+ ||||+.++ +.|.+
T Consensus 171 ~ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d----- 245 (432)
T 1h3f_A 171 HELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE----- 245 (432)
T ss_dssp GGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----
T ss_pred cccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC-----
Confidence 445666666666666789999999999998888888899999877778899999999996 99999875 55553
Q ss_pred CCHHHHHHHHHH
Q psy2381 260 FLPEAILNYLAR 271 (350)
Q Consensus 260 ~~peal~~~l~~ 271 (350)
+|+.+..++..
T Consensus 246 -sp~~i~~Ki~~ 256 (432)
T 1h3f_A 246 -PPEAMFKKLMR 256 (432)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHHhC
Confidence 89999999875
No 46
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=98.33 E-value=1.5e-06 Score=86.49 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=88.2
Q ss_pred CCccchhhhhhhcccC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC--CCHHHH
Q psy2381 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA--TDIMYY 255 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~----gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~--~~l~~l 255 (350)
|..+|.+--+.|=... +.++++-|.|-..|.-.-+.|.+.++..+|.-.+.|+|.+.+|+||||+.++ +.|.
T Consensus 167 ~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~-- 244 (432)
T 2jan_A 167 TEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLD-- 244 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSS--
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEcc--
Confidence 3455655555555555 8999999999998888888888888877777788999999999999999876 4444
Q ss_pred HHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHH
Q psy2381 256 KKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNL 328 (350)
Q Consensus 256 ~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~~~ 328 (350)
+.=.+|..+..++... ++. .+..+++.|. . ++.+++..+-.+|-......++.+.
T Consensus 245 -d~~tsp~~i~qki~~~----~D~---~v~~~l~l~t-~---------~~~~ei~~l~~~~~~g~~~~~~K~~ 299 (432)
T 2jan_A 245 -PQMTSPYAWYQYFVNT----ADA---DVIRYLRWFT-F---------LSADELAELEQATAQRPQQRAAQRR 299 (432)
T ss_dssp -TTTSCHHHHHHHHHTC----CHH---HHHHHHHHHS-C---------CCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred -CCCCCHHHHHHHHhcC----Cch---hHHHHHHHHH-c---------CChHHHHHHHHHHhhccCHHHHHHH
Confidence 2335899999998752 111 2445566665 2 3567777776776643343333333
No 47
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=98.28 E-value=1.8e-05 Score=77.76 Aligned_cols=185 Identities=17% Similarity=0.162 Sum_probs=103.0
Q ss_pred CCC-CcCchhhHHHHH-HHHHHHHHcCCeEEEEecCCC--------cccccHHHHHHHHHHHHHcCCCCCCC-CeeecCC
Q psy2381 11 SPT-GNLHIGGIRTAL-FSWAYARHFNGIFILRIEDTD--------INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKR 79 (350)
Q Consensus 11 sPt-G~lHiG~~rtal-~n~l~Ar~~~G~~iLRieDtD--------~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r 79 (350)
.|| |.|||||+..++ .+| +-+..+..+++-|-|-- +.....++...+..++..+|++++.- .+.||+-
T Consensus 82 ~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~ 160 (393)
T 3hv0_A 82 GPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEY 160 (393)
T ss_dssp CCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHH
T ss_pred CCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHH
Confidence 578 689999999999 788 44555666777787731 11234555667788888899998763 4567776
Q ss_pred HHHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEe
Q psy2381 80 INRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWND 159 (350)
Q Consensus 80 ~~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D 159 (350)
...|..-+-+|-+ .+ |-.++.+. .+ +.- + +
T Consensus 161 ~~~~~~~~~~l~r---~~----t~~~~~~~------~~---------~~~-~-----------------------~---- 190 (393)
T 3hv0_A 161 IAELYPDILRIEK---KI----SCSQIKSI------FG---------FKD-S-----------------------C---- 190 (393)
T ss_dssp HHHHHHHHHHHHH---HS----BHHHHHHH------HC---------CCT-T-----------------------S----
T ss_pred HHHHHHHHHHHHc---cC----CHHHHHHh------hC---------CCC-C-----------------------C----
Confidence 6533222222221 11 12222110 00 000 0 0
Q ss_pred eeeeeeecCCCCCCCeEEEecCCCccchhhhhhhcc----------cCCC-cEEEeCCCCCCCHHHHHHHHHHhCCCCCc
Q psy2381 160 LIKGKITISNKELDDLVIVRADGIPTYNFCAAIDDW----------DMKI-THVIRGDDHINNTPRQINILKALGVTLPF 228 (350)
Q Consensus 160 ~v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~----------~~gI-ThvIRG~D~l~~t~~q~~l~~aLg~~~P~ 228 (350)
+-|..+|-+--+.|=. ..+| ++|..|.|-..+--.-..+.+.+|.+.|.
T Consensus 191 --------------------s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~ 250 (393)
T 3hv0_A 191 --------------------NVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPS 250 (393)
T ss_dssp --------------------BHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCE
T ss_pred --------------------chhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCce
Confidence 0022233222222210 1134 68889999977666666777888999999
Q ss_pred eEeeceeecCCC--ceeccCCCC--CCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 229 YGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 229 y~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~peal~~~l~~l 272 (350)
..|.|+|.+-+| +||||+.++ +.|. -+|+.|..=+...
T Consensus 251 ~l~~~~l~gLdG~~~KMSKS~~nsaI~L~------D~p~~i~kKI~k~ 292 (393)
T 3hv0_A 251 SIHSIFLPSLQGSQTKMSASVQNSSIFVN------DNEESIRNKIMKY 292 (393)
T ss_dssp EEEECCCCC-------------CCCCBTT------CCHHHHHHHHHHH
T ss_pred eeccCcccCCCCCCcCCCCCCCCCeEecc------CCHHHHHHHHHhh
Confidence 899999999999 799999865 4444 4688888888774
No 48
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.27 E-value=9.3e-07 Score=95.26 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=68.9
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEE---EecCCCcc-------------cccHHHHHHHHHHHHHcCCCC
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFIL---RIEDTDIN-------------RSTLSATQTIIDGMKWLGLNY 69 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iL---RieDtD~~-------------r~~~~~~~~i~~dL~wlGl~~ 69 (350)
-.|+|||.|||||+|++++...+||.+ .|.-++ -+|+.+.+ .-...+.+.+.++|+.||+..
T Consensus 40 ~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~ 119 (878)
T 2v0c_A 40 MFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119 (878)
T ss_dssp CCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 469999999999999999999988853 354444 44444322 234678899999999999876
Q ss_pred C--CC-CeeecCCHHHHHHHHHHHHHCCceec
Q psy2381 70 D--EG-PFYQTKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 70 d--e~-~~~QS~r~~~y~~~~~~L~~~G~aY~ 98 (350)
| .. .+..+++....+.+..+|.++|++|.
T Consensus 120 Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 120 DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp CGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 6 31 23355667777888999999999997
No 49
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=98.23 E-value=2e-05 Score=79.35 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=78.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC--ceeccCCCC--CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+.++|..|.|...+.-.-+-|.+.+|++.|...|.|+|.+.+| +||||+.++ +.|. =+|+.|..-+...-
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------d~p~~i~kKi~~yA 376 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNKHA 376 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTT------CCHHHHHHHHHHHS
T ss_pred CceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeec------CCHHHHHHHhcccc
Confidence 5588889999988887777788889998898899999999999 899999876 4443 36888888777633
Q ss_pred CCCC------------CccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhc-CCHHHHHHHHH
Q psy2381 274 WSHG------------NEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS-YDDKKLLNLIQ 330 (350)
Q Consensus 274 ~~~~------------~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~-~~~~~~~~~~~ 330 (350)
.+.+ +.+.-.+-.++..|. .+.+++..+-++|-.. +.+.++.+.|.
T Consensus 377 ~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft-----------~~~~eieel~~~~~~G~~~~~~~K~~La 435 (477)
T 1r6t_A 377 FSGGRDTIEEHRQFGGNCDVDVSFMYLTFFL-----------EDDDKLEQIRKDYTSGAMLTGELKKALI 435 (477)
T ss_dssp CCCSCSSHHHHHHHCCCTTTCHHHHHHHHHC-----------CCHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ccCCccchhhccccCCCchHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3322 011112233444332 2557777777777764 56655555443
No 50
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=98.23 E-value=6.3e-06 Score=79.83 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=118.1
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC-----CCc----ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED-----TDI----NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRI 80 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD-----tD~----~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~ 80 (350)
.|||.|||||...++.+|..-...|...++=|-| +|+ .....+....+.+++..+|++++.- .+.||+-+
T Consensus 48 ~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 48 EPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp CCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhh
Confidence 4559999999777788888777777777776666 233 2334566677888888899998853 57898832
Q ss_pred HHHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEee
Q psy2381 81 NRYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDL 160 (350)
Q Consensus 81 ~~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~ 160 (350)
..+..+..-+. |....-.+..+.. |- +. .+ | ..
T Consensus 128 ~~~~~~~~~~~-------~v~~~~~~~~m~~--------------~~---~~------~~-----r--~~---------- 160 (348)
T 2j5b_A 128 ASNPSYIERML-------DIAEFSTISRVKR--------------CC---QI------MG-----R--NE---------- 160 (348)
T ss_dssp HHCHHHHHHHH-------HHHHHHHHHHHTC-------------------------------------------------
T ss_pred hhhhHHHHHHH-------HHHhheeHHHHHh--------------hh---hh------hh-----h--hc----------
Confidence 11111111111 1111112211100 00 00 00 0 00
Q ss_pred eeeeeecCCCCCCCeEEEecCCCccchhhhhhhcccC---CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeec
Q psy2381 161 IKGKITISNKELDDLVIVRADGIPTYNFCAAIDDWDM---KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVID 237 (350)
Q Consensus 161 v~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~---gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 237 (350)
+|.+ +-|..+|-.--+.|=... +.++|+-|.|-..+.-.=..+.+.+|...|...|.|+|.+
T Consensus 161 ------------~~~i---~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~g 225 (348)
T 2j5b_A 161 ------------SDCL---KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMS 225 (348)
T ss_dssp -----------------------CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCC
T ss_pred ------------cCCc---ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccC
Confidence 0000 225566766666665556 8999999999977766666677889998898899999998
Q ss_pred C-CC-ceeccCCC--CCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 238 S-NK-VKISKRKE--ATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 238 ~-~g-~KLSKR~g--~~~l~~l~~~G~~peal~~~l~~ 271 (350)
- +| +||||+.+ ++.|. -+|+.|..=+..
T Consensus 226 L~dg~~KMSKS~~~~~I~L~------d~p~~i~kKI~k 257 (348)
T 2j5b_A 226 LSGPKKKMSKSDPQGAIFMD------DTEQEVSEKISR 257 (348)
T ss_dssp TTCSSCCCSTTCGGGSCBTT------CCHHHHHHHHHH
T ss_pred CCCcccccccCCCCCeEeec------CCHHHHHHHHhc
Confidence 8 67 79999983 45554 368888888876
No 51
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=98.15 E-value=0.00011 Score=71.68 Aligned_cols=186 Identities=19% Similarity=0.167 Sum_probs=111.3
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc----cccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN----RSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRIN 81 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~----r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~ 81 (350)
.|||.|||||...++.++. ..+.+...++=|-| |.+. ............++-.+||+++.- .++||+...
T Consensus 78 ~PTG~lHLGhyv~~~~~~~-lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~ 156 (372)
T 3a04_A 78 MPSGKFHFGHKLTVDQLIY-LQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGT 156 (372)
T ss_dssp CCCSCCBHHHHHHHHHHHH-HHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCH
T ss_pred CCCcHhHHHHHHHHHHHHH-HHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccchH
Confidence 4689999999997665444 44556676666666 3322 123445566677888999999875 578998766
Q ss_pred HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeee
Q psy2381 82 RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLI 161 (350)
Q Consensus 82 ~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v 161 (350)
.|.+.+..+ .|..+..+++... + .. +.
T Consensus 157 ~~~~l~~~~-------~~~~~~~~~~~~~------~----------~~-~~----------------------------- 183 (372)
T 3a04_A 157 PYFRLIQLF-------SGKVTAAEMEAIY------G----------EL-TP----------------------------- 183 (372)
T ss_dssp HHHHHHHHH-------TTSSCHHHHHHHH------S----------SC-CH-----------------------------
T ss_pred HHHHHHHHH-------HhhhhHHHHhhhh------h----------cc-Cc-----------------------------
Confidence 665544333 3555666664321 0 00 00
Q ss_pred eeeeecCCCCCCCeEEEecCCCccchhhhhh---hccc--CCCcEEEeCCCCCCCHHHHHHHHHHhC----CCCCceEee
Q psy2381 162 KGKITISNKELDDLVIVRADGIPTYNFCAAI---DDWD--MKITHVIRGDDHINNTPRQINILKALG----VTLPFYGHL 232 (350)
Q Consensus 162 ~G~~~~~~~~~~D~Vl~R~dG~PtY~~a~vV---DD~~--~gIThvIRG~D~l~~t~~q~~l~~aLg----~~~P~y~H~ 232 (350)
|.+ .+|.-+-|-.+ -|.. -.-++|=.|.|-..+--.-.-|.+.+| .+.|.-.|.
T Consensus 184 -~~~----------------~yP~lqAaDil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~ 246 (372)
T 3a04_A 184 -AKM----------------MASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYH 246 (372)
T ss_dssp -HHH----------------HHHHHHHHHHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEE
T ss_pred -ccc----------------cCCcchhHHHhhhcCccccCccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhh
Confidence 000 01211211111 0111 124577789998554444445556665 677888899
Q ss_pred ceeecCCCceeccCCCCCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 233 PMVIDSNKVKISKRKEATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 233 pll~~~~g~KLSKR~g~~~l~~l~~~G~~peal~~~l~~ 271 (350)
+++-.-+|.||||+..+.++. | -=+|+.|+.=+..
T Consensus 247 ~~~pgldG~KmS~S~~ns~I~-l---~D~p~~i~kKI~k 281 (372)
T 3a04_A 247 KLQPGLDGRKMSSSRPDSTIF-L---TDPPEVARNKLFR 281 (372)
T ss_dssp CCCBCTTSSBCCTTSGGGSCB-T---TCCHHHHHHHHHT
T ss_pred cccCCCCCCccCCCCCCcccc-c---CCCHHHHHHHHhc
Confidence 998888999999998654332 1 1368888877765
No 52
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.15 E-value=1.9e-06 Score=92.62 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=66.9
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEE---EecCCCcc-------------cccHHHHHHHHHHHHHcCCCC
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFIL---RIEDTDIN-------------RSTLSATQTIIDGMKWLGLNY 69 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iL---RieDtD~~-------------r~~~~~~~~i~~dL~wlGl~~ 69 (350)
-.|+|||.|||||+|++++...+||.+ .|.-++ =+|+...+ .-...+.+.|.++|+.||+..
T Consensus 60 ~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~ 139 (880)
T 4arc_A 60 MLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGY 139 (880)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 369999999999999999999999853 465455 44443322 224567889999999999877
Q ss_pred C--CCCeee--cCCHHHHHHHHHHHHHCCceec
Q psy2381 70 D--EGPFYQ--TKRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 70 d--e~~~~Q--S~r~~~y~~~~~~L~~~G~aY~ 98 (350)
| . .++. .++....+.+..+|.++|++|.
T Consensus 140 Dw~~-~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 140 DWSR-ELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp CGGG-CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCC-CEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 6 4 3333 2445666777889999999998
No 53
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=98.12 E-value=7e-05 Score=73.85 Aligned_cols=68 Identities=16% Similarity=0.021 Sum_probs=54.5
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC--ceeccCCC--CCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKE--ATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~KLSKR~g--~~~l~~l~~~G~~peal~~~l~~ 271 (350)
+.++|..|.|-..+--.=+-+.+.+|.+.|.-.|.|+|.+-+| +||||+.. ++.|. -+|+.|..=+..
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~------D~p~~I~kKI~k 314 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD------DAQDTIRKKIIA 314 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTT------CCHHHHHHHHHH
T ss_pred CCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCC------CCHHHHHHHHHh
Confidence 4678889999977666666777889999998889999999999 69999983 45554 368888877766
No 54
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.11 E-value=3.5e-06 Score=90.06 Aligned_cols=94 Identities=21% Similarity=0.124 Sum_probs=69.2
Q ss_pred ceEeeCCCCCCcCchhhHHHHHHHHHHHHH--cCCeEEEEecCCCc----------------------------------
Q psy2381 4 VRTRFAPSPTGNLHIGGIRTALFSWAYARH--FNGIFILRIEDTDI---------------------------------- 47 (350)
Q Consensus 4 v~~RFAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD~---------------------------------- 47 (350)
+++--+|.|||.|||||++++++...+||. ..|.-++++--+|.
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 566778999999999999999999999994 45777777532221
Q ss_pred ------ccccHHHHHHHHHHHHHcCCCCC--CCCeeecC----CHHHHHHHHHHHHHCCceec
Q psy2381 48 ------NRSTLSATQTIIDGMKWLGLNYD--EGPFYQTK----RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 48 ------~r~~~~~~~~i~~dL~wlGl~~d--e~~~~QS~----r~~~y~~~~~~L~~~G~aY~ 98 (350)
..-...+.+.+.++|++||+..| . +|+.++ +....+.+..+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~-~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSR-EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGG-CCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCC-ceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 01123455889999999998666 4 455555 33444677889999999987
No 55
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=98.11 E-value=5.1e-07 Score=86.63 Aligned_cols=133 Identities=15% Similarity=0.204 Sum_probs=87.8
Q ss_pred CCccchhhhhhhcccC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHH
Q psy2381 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~----gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (350)
|..+|-.--+.|=... +.+.++-|.|-..+.-.-+.|.+.++..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 171 g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d-- 248 (322)
T 2yxn_A 171 TEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP-- 248 (322)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST--
T ss_pred hhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC--
Confidence 3445554444444444 7887788999988887778888888876666678899999999999999875 44543
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHH----HHHHHHHHH
Q psy2381 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDK----KLLNLIQPI 332 (350)
Q Consensus 257 ~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~----~~~~~~~~~ 332 (350)
.=.+|+.+..++... .+. .+..+++.|. . ++.+++..+-++|-....+. .|++.+..+
T Consensus 249 -~~tsp~~~~~ki~~~----~d~---~v~~~l~~~~-~---------~~~~~i~~l~~~~~~g~~~~~~K~~La~~i~~~ 310 (322)
T 2yxn_A 249 -KKTSPYKFYQFWINT----ADA---DVYRFLKFFT-F---------MSIEEINALEEEDKNSGKAPRAQYVLAEQVTRL 310 (322)
T ss_dssp -TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC-C---------CCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHhCC----Ccc---cHHHHHHHHH-c---------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 336899999888742 111 3445566665 2 35567776666666433322 344555555
Q ss_pred HH
Q psy2381 333 IK 334 (350)
Q Consensus 333 ~~ 334 (350)
+.
T Consensus 311 l~ 312 (322)
T 2yxn_A 311 VH 312 (322)
T ss_dssp HH
T ss_pred hC
Confidence 54
No 56
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=98.06 E-value=0.0001 Score=71.88 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=63.5
Q ss_pred CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCceEeeceeecC-CCc-eeccCCC--CCCHHHHH
Q psy2381 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDS-NKV-KISKRKE--ATDIMYYK 256 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~-~P~y~H~pll~~~-~g~-KLSKR~g--~~~l~~l~ 256 (350)
|..+|-+--+.|-...+.++++-|.|-..+--.=..+.+.+|.. .|...|.|+|.+- +|+ ||||+.+ ++.|.
T Consensus 184 g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~--- 260 (373)
T 3vgj_A 184 SQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD--- 260 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT---
T ss_pred HHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecC---
Confidence 45566666666666778999999999976665556677888876 5788899999884 885 9999985 34443
Q ss_pred HcCCCHHHHHHHHHH
Q psy2381 257 KKGFLPEAILNYLAR 271 (350)
Q Consensus 257 ~~G~~peal~~~l~~ 271 (350)
-+|+.|..-+..
T Consensus 261 ---D~p~~i~~KI~k 272 (373)
T 3vgj_A 261 ---DSESDVNRKIKK 272 (373)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHh
Confidence 468888887776
No 57
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=98.03 E-value=1e-05 Score=78.55 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=79.5
Q ss_pred CCccchhhhhhhcccC----CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCCceeccCCCC-CCHHHHH
Q psy2381 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~----gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (350)
|..+|-.--+.|=... +.++|+.|.|-..+.-.=+.|.+.++..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 190 g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 267 (356)
T 2pid_A 190 AEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR-- 267 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST--
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC--
Confidence 4456665555555556 8999999999988887778888899987777788999999999999999765 45543
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHH----HHHHHHHH
Q psy2381 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKK----LLNLIQPI 332 (350)
Q Consensus 257 ~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~----~~~~~~~~ 332 (350)
.=.+|+.+..++... ++. .+..+++.|. .++.+++..+-.+|-......+ |++.+..+
T Consensus 268 -~~tsp~~i~~ki~~~----~D~---~v~~~l~~~t----------~~~~~~i~~l~~~~~~g~~~~~~K~~La~~v~~~ 329 (356)
T 2pid_A 268 -DKTSPFELYQFFVRQ----PDD---SVERYLKLFT----------FLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKL 329 (356)
T ss_dssp -TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC----------CCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHcC----Cch---hHHHHHHHHH----------cCCchHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 225799999998752 121 2445666665 2456777777677765333333 44444455
Q ss_pred HH
Q psy2381 333 IK 334 (350)
Q Consensus 333 ~~ 334 (350)
+.
T Consensus 330 l~ 331 (356)
T 2pid_A 330 VH 331 (356)
T ss_dssp HH
T ss_pred Hc
Confidence 53
No 58
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=98.03 E-value=2e-05 Score=78.17 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=86.7
Q ss_pred CccchhhhhhhcccC----CCcEEEeCCCCCCCHHHHHHHHHHh-CCCCCceEeeceeecCCCceeccCCCC-CCHHHHH
Q psy2381 183 IPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKAL-GVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (350)
Q Consensus 183 ~PtY~~a~vVDD~~~----gIThvIRG~D~l~~t~~q~~l~~aL-g~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (350)
..+|.+--+.|=... +.++++-|.|-..|.-.=+.|.+.+ +..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 167 ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d-- 244 (420)
T 1jil_A 167 EFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDA-- 244 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSST--
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecCC--
Confidence 355655555555556 8999999999988888778888888 877777789999999999999999875 44442
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHH
Q psy2381 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNL 328 (350)
Q Consensus 257 ~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~~~ 328 (350)
.=.+|+.+..++... ++. .+..+++.|. . ++.+++..+-++|-....+.++.+.
T Consensus 245 -~~tsp~~i~~ki~~~----~D~---~v~~~l~~~t-~---------~~~~ei~~l~~~~~~g~~~~~~K~~ 298 (420)
T 1jil_A 245 -EKTSPYEFYQFWINQ----SDE---DVIKFLKYFT-F---------LGKEEIDRLEQSKNEAPHLREAQKT 298 (420)
T ss_dssp -TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC-C---------CCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred -CCCCHHHHHHHHhcC----Cch---hHHHHHHHHH-c---------CCHHHHHHHHHHHhcCCChHHHHHH
Confidence 335899999888751 111 2345566665 2 3556777666666643333333333
No 59
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=98.00 E-value=7.8e-05 Score=74.31 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=114.6
Q ss_pred CCC-CcCchhhHHHHH-HHHHHHHHcCCeEEEEecCC-----C---cccccHHHHHHHHHHHHHcCCCCCCC-CeeecCC
Q psy2381 11 SPT-GNLHIGGIRTAL-FSWAYARHFNGIFILRIEDT-----D---INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKR 79 (350)
Q Consensus 11 sPt-G~lHiG~~rtal-~n~l~Ar~~~G~~iLRieDt-----D---~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r 79 (350)
.|| |.|||||+..++ .+| +-+..+..+++-|.|- . +.....+....+..++-.+|++++.- .+.||+-
T Consensus 99 dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~ 177 (451)
T 3foc_A 99 GPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQY 177 (451)
T ss_dssp CCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHH
T ss_pred CCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchh
Confidence 578 899999999998 788 4444566777778773 1 12234555667777777889988752 5678876
Q ss_pred HH--HHHHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCC---CCCCCC-CCCCCCCCCCCCCCCCCceEEEeCCC--
Q psy2381 80 IN--RYFEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEK---PRYNRI-WRPEPGKILPSIPINRKPVIRFKNPL-- 151 (350)
Q Consensus 80 ~~--~y~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~---~~Y~g~-cr~l~~~ee~~~~~~~~~~~R~k~~~-- 151 (350)
.. .|.+.+-+|- +..|-.++.+... ...+.+ ..||-- +.+.... ...|.++++ +|.
T Consensus 178 ~~~~~~~~~l~~L~-------r~~Tv~~m~~~~~--f~~~is~gef~YPlLQAaDil~~----~~d~~~~~~---vp~~~ 241 (451)
T 3foc_A 178 LSLKNRYRFSCLVD-------RMLPISQLRASFG--FSNDANVGYAAFPPKQMLPVYST----YFDGLPFTR---VPLPV 241 (451)
T ss_dssp TTSTTHHHHHHHHH-------HTCCHHHHHHHHC--CCSSSCHHHHTCHHHHHGGGSGG----GGTTSGGGC---CBCC-
T ss_pred hcchhHHHHHHHHH-------hhCCHHHHHhhcc--cCCCCchHHHhhHHHHHHHHHHh----hcCCCCccc---ccccc
Confidence 52 3444444333 2234445433210 000000 001100 0000000 001111110 111
Q ss_pred CCceeEEeeeeeeeec----CCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCCCC
Q psy2381 152 YGNITWNDLIKGKITI----SNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVTLP 227 (350)
Q Consensus 152 ~~~~~~~D~v~G~~~~----~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~~P 227 (350)
+..-...+. -++. .+..-.|.+|.+.+-+|.- |-. ..|..---++|..|.|-..+--.-..+.+.+|.+.|
T Consensus 242 d~~~~~~~~---~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~-~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p 316 (451)
T 3foc_A 242 GTGNEDAAD---AVSTKKASKKTPKKDAVLSPVHVVEEL-FPD-SKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKN 316 (451)
T ss_dssp ---------------------------CCCCHHHHHHHH-CGG-GGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCC
T ss_pred ccccchhhh---hhhhhhccccccchhhhhhhcccchhh-ccc-ccccccccceeeeecchHHHHHHHHHHHHHhCCCCC
Confidence 000000000 0111 0111123333333211100 000 001111223677899986555444556677898889
Q ss_pred ceEeeceeecCCCc--eeccCCCCCCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 228 FYGHLPMVIDSNKV--KISKRKEATDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 228 ~y~H~pll~~~~g~--KLSKR~g~~~l~~l~~~G~~peal~~~l~~l 272 (350)
...|.|+|.+-+|. ||||+.++..|. | .-+|+.|..=+...
T Consensus 317 ~~~~~~~l~gLdG~~~KMSKS~~ns~I~-l---~D~p~~I~kKI~k~ 359 (451)
T 3foc_A 317 AYLLGKFLPGLQGSGTKMSASDPNSAIY-L---TDTPAQIKNKINRY 359 (451)
T ss_dssp EEEEECCCCBTTBTTCCCCTTCGGGSCB-T---TCCHHHHHHHHHHH
T ss_pred eeecCCcccCCCCCCCccCCCCCCCeee-e---cCCHHHHHHHHhhh
Confidence 88899999888885 999999752221 1 24688888888774
No 60
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=97.98 E-value=1.7e-05 Score=78.55 Aligned_cols=127 Identities=13% Similarity=0.210 Sum_probs=85.5
Q ss_pred CccchhhhhhhcccC----CCcEEEeCCCCCCCHHHHHHHHHHh-CCCCCceEeeceeecCCCceeccCCCC-CCHHHHH
Q psy2381 183 IPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKAL-GVTLPFYGHLPMVIDSNKVKISKRKEA-TDIMYYK 256 (350)
Q Consensus 183 ~PtY~~a~vVDD~~~----gIThvIRG~D~l~~t~~q~~l~~aL-g~~~P~y~H~pll~~~~g~KLSKR~g~-~~l~~l~ 256 (350)
..+|.+--+.|=... +.++++-|.|-..|.-.=+.|.+.+ +..+|.-.+.|+|.+.+|+||||+.++ +.|.+
T Consensus 166 ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~d-- 243 (419)
T 2ts1_A 166 EFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDK-- 243 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSST--
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecCC--
Confidence 345555555555555 8999999999988887778888888 877777789999999999999999875 45542
Q ss_pred HcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhcCCHHHHHHHH
Q psy2381 257 KKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKSYDDKKLLNLI 329 (350)
Q Consensus 257 ~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~~~~~~~~~~~ 329 (350)
.=.+|..+..++... ++. .+..+++.|. . ++.+++..+-++|-....+.++.+.|
T Consensus 244 -~~tsp~~i~qki~~~----~D~---~v~~~l~l~t-~---------~~~~ei~~l~~~~~~g~~~~~~K~~L 298 (419)
T 2ts1_A 244 -EKTSPYEFYQFWINT----DDR---DVIRYLKYFT-F---------LSKEEIEALEQELREAPEKRAAQKTL 298 (419)
T ss_dssp -TTSCHHHHHHHHHTC----CHH---HHHHHHHHHC-C---------CCHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred -CCCCHHHHHHHHhcC----Cch---hHHHHHHHHH-c---------CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 335788998888752 111 2345566665 2 34567777766766544444443333
No 61
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.95 E-value=4.2e-06 Score=82.09 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCcc--cccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDIN--RSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~~--r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.|||||...++.+|..-+. +...++=|-| |++. ....+....+..++..+||+++.- .+.||+-.+.
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~- 120 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAH- 120 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHH-
T ss_pred CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccch-
Confidence 57799999999999998876544 5555555555 3321 234556677888888899999873 5789997642
Q ss_pred HHHHHHHHHCCceeccCCCHHHHH
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIE 107 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~ 107 (350)
.+.. +.+.|..+-.+++
T Consensus 121 ~el~-------w~l~~~~~~~~L~ 137 (388)
T 3prh_A 121 AQAG-------WMMQCVAYIGELE 137 (388)
T ss_dssp HHHH-------HHHHTTSCHHHHH
T ss_pred HHHH-------HHHHhhccHHHHH
Confidence 2222 2245777777764
No 62
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=97.95 E-value=7.2e-05 Score=74.43 Aligned_cols=68 Identities=10% Similarity=-0.019 Sum_probs=53.8
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC--ceeccCCCC--CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 198 KITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKEA--TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 198 gIThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~KLSKR~g~--~~l~~l~~~G~~peal~~~l~~ 271 (350)
+-++|-.|.|-..+--.=.-|.+.+|++.|...+.|+|.+.+| +||||+.++ +.|. =+|+.|..-+..
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~------D~p~~I~kKI~~ 327 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLT------DTAKQIKTKVNK 327 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTT------CCHHHHHHHHHH
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeecc------CCHHHHHHHhhc
Confidence 3467778999877766666667888988898899999999999 899999876 4443 358888887776
No 63
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.93 E-value=3.6e-06 Score=90.12 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=65.4
Q ss_pred eCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc---------------------------------cccH
Q psy2381 8 FAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN---------------------------------RSTL 52 (350)
Q Consensus 8 FAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~---------------------------------r~~~ 52 (350)
-+|.|||.|||||+++.++...+||.+ .|.-++.+-.+|.- ....
T Consensus 45 ~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~ 124 (821)
T 1ile_A 45 GPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVF 124 (821)
T ss_dssp CCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHH
Confidence 369999999999999999999999853 46555555454420 0123
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCeeecC--CHHHHHHHHHHHHHCCceec
Q psy2381 53 SATQTIIDGMKWLG--LNYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 53 ~~~~~i~~dL~wlG--l~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~ 98 (350)
.+.+.+.+.+++|| ++||. +++-++ +...-+.+..+|.++|++|.
T Consensus 125 ~~~~~~~~~~~~lg~~~dwd~-~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 125 TYEKEWEAFTERIAYWVDLED-AYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTHHHHTTHHHHTTCCCEEEE-EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCeEccCC-CeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 56778899999999 89997 454443 22334556679999999998
No 64
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=97.86 E-value=4.3e-05 Score=75.11 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=83.2
Q ss_pred CCccchhhhhhhcccC----CCcEEEeCCCCCCCHHHHHHHHHHh-----------------CCCCCceEeeceeecCCC
Q psy2381 182 GIPTYNFCAAIDDWDM----KITHVIRGDDHINNTPRQINILKAL-----------------GVTLPFYGHLPMVIDSNK 240 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~----gIThvIRG~D~l~~t~~q~~l~~aL-----------------g~~~P~y~H~pll~~~~g 240 (350)
|..+|.+--+.|=... +.++++-|.|-..|...=+-|.+.+ |+++|.-.+.|+|.+.+|
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG 291 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG 291 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch
Confidence 3456665555554434 7999999999977666555555443 124556678899999999
Q ss_pred ceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhccccCCCCCCCCcccHHHHHHHHHHHhhc
Q psy2381 241 VKISKRKEA-TDIMYYKKKGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFNDCKYLSKSPAQFNLKKLEWLNNFYIKS 319 (350)
Q Consensus 241 ~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~~~~~i~~~~~~~d~~kL~~~n~~~i~~ 319 (350)
+||||+.++ +.|.+ .--+|..+..++... ++. .+..++..|. .++.+++..+-.+|-..
T Consensus 292 ~KMSKS~~naI~L~d---~~tsp~~i~qki~~~----~D~---~v~~~l~~ft----------~l~~~ei~~l~~~~~~g 351 (392)
T 1y42_X 292 AKFGKSAGNAIWLDP---YQTSVFDFYGYFVRR----SDQ---EVENLLKLFT----------FMPISEITKTMEEHIKD 351 (392)
T ss_dssp CBTTBCSSSBCBSST---TTSCHHHHHHHHHTC----CTT---THHHHHHHHC----------CCCHHHHHHHHHHHHHC
T ss_pred hhccCCCCCeeeccC---CCCCHHHHHHHHHcC----Cch---hHHHHHHHHH----------hCChhHHHHHHHHHhcC
Confidence 999999875 44442 225899999999752 122 3456666665 23667777777777653
Q ss_pred CCHHHHHHHH
Q psy2381 320 YDDKKLLNLI 329 (350)
Q Consensus 320 ~~~~~~~~~~ 329 (350)
....++.+.|
T Consensus 352 ~~~~~~K~~L 361 (392)
T 1y42_X 352 PSKRVAQHTL 361 (392)
T ss_dssp GGGCHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3444444333
No 65
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.85 E-value=6.9e-06 Score=80.80 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=43.2
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHhCCCCCceEeeceeecCCC--ceeccCCC-CCCHHHHHHcCCCHHHHHHHHHH
Q psy2381 199 ITHVIRGDDHINNTPRQINILKALGVTLPFYGHLPMVIDSNK--VKISKRKE-ATDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 199 IThvIRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~KLSKR~g-~~~l~~l~~~G~~peal~~~l~~ 271 (350)
.++|..|.|-..+--.=+-|.+.+|.+.|...|.|+|.+-+| +||||+.+ ++.|. -+|+.|..-+..
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~------D~p~~i~kKI~k 294 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLT------DTEKMVKDKINK 294 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBTT------CCHHHHHHHHC-
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccCC------CCHHHHHHHHHh
Confidence 567889999977666667777889999998899999999999 79999965 35554 267777776644
No 66
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.85 E-value=0.00034 Score=73.33 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhCCC-CCceEeeceeecC-CCc-eeccCCC--CCCHHHHH
Q psy2381 182 GIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALGVT-LPFYGHLPMVIDS-NKV-KISKRKE--ATDIMYYK 256 (350)
Q Consensus 182 G~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg~~-~P~y~H~pll~~~-~g~-KLSKR~g--~~~l~~l~ 256 (350)
|..+|-.--+.|-...+.++|.-|.|-..+--.=+.+.+.+|.. .|...+.|+|.+- +|+ ||||+.+ ++.|.
T Consensus 167 g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~--- 243 (690)
T 3p0j_A 167 AQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME--- 243 (690)
T ss_dssp SCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT---
T ss_pred hhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc---
Confidence 56777777777777778999999999976665556677888876 5778899999887 885 9999986 34553
Q ss_pred HcCCCHHHHHHHHHH
Q psy2381 257 KKGFLPEAILNYLAR 271 (350)
Q Consensus 257 ~~G~~peal~~~l~~ 271 (350)
-+|+.|..-+..
T Consensus 244 ---D~p~~i~kKI~~ 255 (690)
T 3p0j_A 244 ---DTEEDVARKIRQ 255 (690)
T ss_dssp ---CCHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHh
Confidence 468888888876
No 67
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.81 E-value=1.6e-05 Score=85.99 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=66.9
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC----------------c-----c-------cccHHHH
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD----------------I-----N-------RSTLSAT 55 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD----------------~-----~-------r~~~~~~ 55 (350)
+=-+|.|||.|||||+++.++...++|.+ .|.-++.+--+| + + .-..++.
T Consensus 53 ~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~ 132 (917)
T 1ffy_A 53 HDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQI 132 (917)
T ss_dssp ECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHH
Confidence 33479999999999999999999999964 465444433333 1 0 1245678
Q ss_pred HHHHHHHHHcCC--CCCCCCeeecC--CHHHHHHHHHHHHHCCceec
Q psy2381 56 QTIIDGMKWLGL--NYDEGPFYQTK--RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 56 ~~i~~dL~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~G~aY~ 98 (350)
+.+.++++.||+ +||. +|+-.+ +...-+.+..+|.++|++|.
T Consensus 133 ~~~~~~~~rlG~~~Dwd~-~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 133 ELQKKDFRRLGVRGDFND-PYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHTTTCCSCTTS-CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCeEEccCC-CeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 899999999999 6887 555443 33444566789999999998
No 68
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=97.77 E-value=8e-06 Score=78.96 Aligned_cols=190 Identities=18% Similarity=0.238 Sum_probs=109.2
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CC--cccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TD--INRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD--~~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.|||||...++-+|..-+. +...++=|-| |+ +.....+....+..++..+||+++.- .+.||+-.+..
T Consensus 23 ~PTG~lHLGh~vg~l~~~~~lQ~-~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~v~~~~ 101 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQWVQMQD-DYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHS 101 (346)
T ss_dssp CSCSCCBHHHHHHTHHHHHTTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGCTHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-hCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccccccch
Confidence 57799999999999988853332 3455554555 32 22344566677888888999999874 57899855432
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCceeEEeeeee
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIESFRKKQRSFGEKPRYNRIWRPEPGKILPSIPINRKPVIRFKNPLYGNITWNDLIKG 163 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~~r~~~~~~~~~~~Y~g~cr~l~~~ee~~~~~~~~~~~R~k~~~~~~~~~~D~v~G 163 (350)
.. .+.+.|.++.-+++.+.......+
T Consensus 102 el--------~~~l~~~~~~~~l~R~~~~k~~~~---------------------------------------------- 127 (346)
T 3n9i_A 102 QL--------SWALNCYTYFGELSRMTQFKDKSA---------------------------------------------- 127 (346)
T ss_dssp HH--------HHHHHTTSBHHHHHTCHHHHHHHH----------------------------------------------
T ss_pred HH--------HHHHHHHhhHHHHHHHHHHHHHHh----------------------------------------------
Confidence 21 123467777777753321100000
Q ss_pred eeecCCCCCCCeEEEecCCCccchhhhhhhcccCCCcEEEeCCCCCCCHHHHHHHHHHhC------CCCCc--eE-eece
Q psy2381 164 KITISNKELDDLVIVRADGIPTYNFCAAIDDWDMKITHVIRGDDHINNTPRQINILKALG------VTLPF--YG-HLPM 234 (350)
Q Consensus 164 ~~~~~~~~~~D~Vl~R~dG~PtY~~a~vVDD~~~gIThvIRG~D~l~~t~~q~~l~~aLg------~~~P~--y~-H~pl 234 (350)
... ..+ +-|..+|-.--+.|-...+.++|..|.|-..+--.-..+.+.+| +..|. .. |.+.
T Consensus 128 ~~~---~~~-------~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~ 197 (346)
T 3n9i_A 128 RYA---ENI-------NAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGAR 197 (346)
T ss_dssp HSG---GGC-------BHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCC
T ss_pred ccC---CCC-------CchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCccc
Confidence 000 000 11445565555666667789999999998654444444555554 12332 11 2244
Q ss_pred eecC-CC-ceeccCCCC----CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 235 VIDS-NK-VKISKRKEA----TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 235 l~~~-~g-~KLSKR~g~----~~l~~l~~~G~~peal~~~l~~ 271 (350)
+.+- +| +||||+.++ +.|. -+|+.|..=+..
T Consensus 198 l~gL~dg~~KMSKS~~~~~~~I~L~------D~p~~i~kKI~k 234 (346)
T 3n9i_A 198 VMSLQDPTKKMSKSDDNRNNVIELL------EDPKSVVKKIKR 234 (346)
T ss_dssp CBCSSCTTSBCCTTCSCGGGCCBTT------SCHHHHHHHHHT
T ss_pred CccCCCCccccCCCCCCCCceecCC------CCHHHHHHHHHh
Confidence 4444 56 499999863 3332 246666665554
No 69
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.76 E-value=1.9e-05 Score=86.03 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCcEEEeCCCCCCCH-HHHHHHHHH-hCC-CCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHh
Q psy2381 198 KITHVIRGDDHINNT-PRQINILKA-LGV-TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLARL 272 (350)
Q Consensus 198 gIThvIRG~D~l~~t-~~q~~l~~a-Lg~-~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~l 272 (350)
.++..+-|.|++..- -..++...+ ++. +.| .+.|+++++. +|+|||||.|+ +++.++.++ |.++++|.||+..
T Consensus 603 P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~-yGaDalR~~ll~~ 680 (967)
T 1wz2_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMSL 680 (967)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHT-TCHHHHHHHHHHH
T ss_pred CCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHH-hChHHHHHHHHhC
Confidence 455567799986431 111222233 242 234 4778888876 89999999997 789999986 9999999999865
Q ss_pred C
Q psy2381 273 G 273 (350)
Q Consensus 273 G 273 (350)
+
T Consensus 681 ~ 681 (967)
T 1wz2_A 681 A 681 (967)
T ss_dssp C
T ss_pred C
Confidence 5
No 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.73 E-value=3.6e-05 Score=82.72 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=69.2
Q ss_pred EeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCCcc------------------cc--------------c
Q psy2381 6 TRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTDIN------------------RS--------------T 51 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~~------------------r~--------------~ 51 (350)
+=-+|.|||.|||||+++.++...++|.+ .|.-++.+-.+|.- +. +
T Consensus 39 ~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 118 (862)
T 1gax_A 39 FMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118 (862)
T ss_dssp ECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHH
T ss_pred EcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHH
Confidence 34479999999999999999999999964 57777766555521 11 3
Q ss_pred HHHHHHHHHHHHHcCCCCC--CCCeeec--CCHHHHHHHHHHHHHCCceec
Q psy2381 52 LSATQTIIDGMKWLGLNYD--EGPFYQT--KRINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 52 ~~~~~~i~~dL~wlGl~~d--e~~~~QS--~r~~~y~~~~~~L~~~G~aY~ 98 (350)
.++.+.|.+.|+.||+..| . +|+-. ++...-+.+..+|.++|++|.
T Consensus 119 ~~~~~~~~~q~~rlG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 119 EESGGTILKQLKRLGASADWSR-EAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGG-CEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHhCccccCCC-CcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 6778899999999996555 3 44433 344556777889999999998
No 71
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=97.56 E-value=1.3e-05 Score=77.42 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=58.6
Q ss_pred CCCCcCchhhHHHHHHHHHHHHHcCCeEEEEecC----CCc--ccccHHHHHHHHHHHHHcCCCCCCC-CeeecCCHHHH
Q psy2381 11 SPTGNLHIGGIRTALFSWAYARHFNGIFILRIED----TDI--NRSTLSATQTIIDGMKWLGLNYDEG-PFYQTKRINRY 83 (350)
Q Consensus 11 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD----tD~--~r~~~~~~~~i~~dL~wlGl~~de~-~~~QS~r~~~y 83 (350)
.|||.|||||...++-+|..-+. +...++=|-| |++ .....+....+..++..+||+++.- .+.||+-.+..
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~qS~v~~~~ 92 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHA 92 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEeccchhhhH
Confidence 56799999999999988854443 3444444555 332 2335566777888888999999874 57799865422
Q ss_pred HHHHHHHHHCCceeccCCCHHHHHH
Q psy2381 84 FEIINYLLSNDYAYYCYSSVEEIES 108 (350)
Q Consensus 84 ~~~~~~L~~~G~aY~C~cs~~~l~~ 108 (350)
. | .+.+.|.++.-+++.
T Consensus 93 e-----l---~~~l~~~~~~~~l~R 109 (341)
T 3sz3_A 93 Q-----L---GWVLNCYTQMGELSR 109 (341)
T ss_dssp H-----H---HHHHHTTSCHHHHHT
T ss_pred H-----H---HHHHHhhccHHHHHH
Confidence 1 1 123467777777754
No 72
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=96.65 E-value=0.0057 Score=65.37 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHH--HHh-CCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 197 MKITHVIRGDDHINNTPRQINIL--KAL-GVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~--~aL-g~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
.-++..+-|.||+..-+ +..+. .++ |.++| .+.-++++++.+|+|||||.|+ +++.++.++ +.++++|.||+.
T Consensus 543 ~P~dl~~~G~D~~r~w~-~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~ 620 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWF-NSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYV 620 (821)
T ss_dssp SSBSBEEEEGGGGGTHH-HHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHH
T ss_pred CCcccccchhhhhccHH-HHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHh
Confidence 34566678999875322 22222 233 65444 4555577778899999999997 789999976 999999999998
Q ss_pred hC
Q psy2381 272 LG 273 (350)
Q Consensus 272 lG 273 (350)
.+
T Consensus 621 ~~ 622 (821)
T 1ile_A 621 SA 622 (821)
T ss_dssp HS
T ss_pred CC
Confidence 76
No 73
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=96.61 E-value=0.007 Score=65.48 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=52.7
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHHH---hCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 197 MKITHVIRGDDHINNTPRQINILKA---LGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~~a---Lg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
+-.+..+-|.||+..- .|..++.+ .|.+++ .+..++++++.+|+|||||.|+ ++..++.+. +.++++|.|++.
T Consensus 547 ~P~Dl~~~G~D~~r~w-f~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls 624 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGW-FNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSS 624 (917)
T ss_dssp SSBSEEEEEGGGGTTH-HHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHT
T ss_pred CCceEEEEEecccccH-HHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhc
Confidence 3456667899986432 34333333 355443 2444489988899999999997 789999976 899999999997
No 74
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.012 Score=62.68 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=52.7
Q ss_pred CCCcEEEeCCCCCCC-HHHHHHHHHH-hCC-CCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 197 MKITHVIRGDDHINN-TPRQINILKA-LGV-TLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 197 ~gIThvIRG~D~l~~-t~~q~~l~~a-Lg~-~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
+.++.-+-|.|++.. ....+.+..+ ++. +.| .+.|.++++. +|+|||||.|+ +++.++.++ +.++++|.||+.
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~-yGaDalR~~ll~ 679 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIMS 679 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHH-HCHHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHH-cChHHHHHHHHh
Confidence 456666789999642 1222222233 232 235 4678888865 89999999997 789999986 889999999986
Q ss_pred hC
Q psy2381 272 LG 273 (350)
Q Consensus 272 lG 273 (350)
.+
T Consensus 680 ~~ 681 (810)
T 1wkb_A 680 LA 681 (810)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 75
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=95.84 E-value=0.024 Score=60.96 Aligned_cols=75 Identities=17% Similarity=0.053 Sum_probs=52.5
Q ss_pred CCCcEEEeCCCCCCCHHHHHHHHH---HhCCCCC-ceEeeceeecCCCceeccCCCC-CCHHHHHHcCCCHHHHHHHHHH
Q psy2381 197 MKITHVIRGDDHINNTPRQINILK---ALGVTLP-FYGHLPMVIDSNKVKISKRKEA-TDIMYYKKKGFLPEAILNYLAR 271 (350)
Q Consensus 197 ~gIThvIRG~D~l~~t~~q~~l~~---aLg~~~P-~y~H~pll~~~~g~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~ 271 (350)
.-.+..+-|.|.+.--+. ..+.. ..|..+. .+.-++++++.+|+|||||.|+ ++..++.++ |.++++|.||+.
T Consensus 480 ~P~d~~v~G~Dii~~W~a-~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~ll~ 557 (862)
T 1gax_A 480 YPGDVLVTGYDILFLWVS-RMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIY 557 (862)
T ss_dssp CSBSCEEEEGGGTTTTHH-HHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHH
T ss_pred CCceEEecCccccccHHH-HHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHHHHHHh
Confidence 445556678887643222 22222 3354332 4555578888999999999997 789999986 889999999998
Q ss_pred hC
Q psy2381 272 LG 273 (350)
Q Consensus 272 lG 273 (350)
.+
T Consensus 558 ~~ 559 (862)
T 1gax_A 558 LA 559 (862)
T ss_dssp HC
T ss_pred cC
Confidence 65
No 76
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.017 Score=62.92 Aligned_cols=93 Identities=19% Similarity=0.097 Sum_probs=65.5
Q ss_pred eEeeCCCCCCcCchhhHHHHHHHHHHHHHc--CCeEEEEecCCC------------------------------------
Q psy2381 5 RTRFAPSPTGNLHIGGIRTALFSWAYARHF--NGIFILRIEDTD------------------------------------ 46 (350)
Q Consensus 5 ~~RFAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD------------------------------------ 46 (350)
++=-+|.|||.||+||+++.++...+||.+ .|.-+++.=-.|
T Consensus 38 i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~ 117 (967)
T 1wz2_A 38 ITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILW 117 (967)
T ss_dssp EEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHH
T ss_pred EEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHH
Confidence 344579999999999999999999999854 455444432111
Q ss_pred ----cccccHHHHHHHHHHHHHcCC--CCCCCCeeecC----CHHHHHHHHHHHHHCCceec
Q psy2381 47 ----INRSTLSATQTIIDGMKWLGL--NYDEGPFYQTK----RINRYFEIINYLLSNDYAYY 98 (350)
Q Consensus 47 ----~~r~~~~~~~~i~~dL~wlGl--~~de~~~~QS~----r~~~y~~~~~~L~~~G~aY~ 98 (350)
+..-...+.+.+.+.|+.||+ +|+. +|+-.+ +...-+....+|.++|++|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r-~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 118 TFEDPINIVKYFMKAAKETFIRAGFSVDWSR-EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHTTTCCCCTTS-CCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceEecCC-CeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 111234566889999999997 5655 555555 34444566778999999998
No 77
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=94.92 E-value=0.012 Score=63.26 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=55.8
Q ss_pred ccCCCcEEEeCCCCCCCH-----HHHHHHHHHhCC---CCC--ceEeeceee-------cCCCc----------------
Q psy2381 195 WDMKITHVIRGDDHINNT-----PRQINILKALGV---TLP--FYGHLPMVI-------DSNKV---------------- 241 (350)
Q Consensus 195 ~~~gIThvIRG~D~l~~t-----~~q~~l~~aLg~---~~P--~y~H~pll~-------~~~g~---------------- 241 (350)
..+-++..|-|.||-..- ..+..| ..+|+ ..| ...+.++++ +.+|+
T Consensus 540 ~~~PvD~yigG~EHailHllyaRf~~~~L-~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~ 618 (880)
T 4arc_A 540 YWLPVDIYIGGIEHAIMHLLYFRFFHKLM-RDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEK 618 (880)
T ss_dssp HHCSEEEEECCGGGTTTHHHHHHHHHHHH-HHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTT
T ss_pred ccCCceEeecchhhHHHHHHHHHHHHHHH-HHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccc
Confidence 357888889999984322 222222 33454 455 355668875 67787
Q ss_pred --------------------eeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 242 --------------------KISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 242 --------------------KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
|||||+|+ ++..++.++ |.++++|.|++..+
T Consensus 619 ~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIek-YGADalRl~ll~~~ 670 (880)
T 4arc_A 619 GRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVER-YGADTVRLFMMFAS 670 (880)
T ss_dssp CCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS
T ss_pred cccccccccCCccccccccccccCcCCCCCCHHHHHHH-cCchHHHHHHHhcC
Confidence 99999997 789999987 89999999999875
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=94.21 E-value=0.064 Score=57.72 Aligned_cols=32 Identities=13% Similarity=-0.053 Sum_probs=29.0
Q ss_pred ceeccCCCC-CCHHHHHHcCCCHHHHHHHHHHhC
Q psy2381 241 VKISKRKEA-TDIMYYKKKGFLPEAILNYLARLG 273 (350)
Q Consensus 241 ~KLSKR~g~-~~l~~l~~~G~~peal~~~l~~lG 273 (350)
+|||||+|+ ++..++.++ |.++++|.|++..+
T Consensus 636 ~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~ 668 (878)
T 2v0c_A 636 AVMSKSKGNGVMVGPFVKE-QGADIARITILFAA 668 (878)
T ss_dssp EECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHS
T ss_pred HHhhccCCCcccHHHHHHH-cCccHHHHHHhccC
Confidence 999999997 789999987 89999999999865
No 79
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=92.91 E-value=0.3 Score=51.11 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=56.1
Q ss_pred EeeCCCCCCcCchhhHHHHHH--HHHHHHHcCCeEEEEecCC----Ccc-----cccHHHHHHHHHHHHHcCCCCCCCCe
Q psy2381 6 TRFAPSPTGNLHIGGIRTALF--SWAYARHFNGIFILRIEDT----DIN-----RSTLSATQTIIDGMKWLGLNYDEGPF 74 (350)
Q Consensus 6 ~RFAPsPtG~lHiG~~rtal~--n~l~Ar~~~G~~iLRieDt----D~~-----r~~~~~~~~i~~dL~wlGl~~de~~~ 74 (350)
+=|-| |||.|||||+...+. +...--..|+..++=|-|. +.+ .....+......++..+|++.....+
T Consensus 385 ~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv 463 (690)
T 3p0j_A 385 CMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIV 463 (690)
T ss_dssp EEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEE
T ss_pred EEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEE
Confidence 45778 999999999998876 3322233478888877773 222 22345556777888999998644467
Q ss_pred eecCCHH----HHHHHHHHHH
Q psy2381 75 YQTKRIN----RYFEIINYLL 91 (350)
Q Consensus 75 ~QS~r~~----~y~~~~~~L~ 91 (350)
+||+-.. .|...+-+|-
T Consensus 464 ~~S~~~~~~~~~~~~~vi~la 484 (690)
T 3p0j_A 464 TENEVILGNCDDFWVSVIGIA 484 (690)
T ss_dssp EHHHHHHHTHHHHHHHHHHHH
T ss_pred ECCchhccchhhHHHHHHHHH
Confidence 8997432 3554444444
No 80
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=29.41 E-value=22 Score=27.07 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=14.3
Q ss_pred HcCCeEEEEecCCCccccc
Q psy2381 33 HFNGIFILRIEDTDINRST 51 (350)
Q Consensus 33 ~~~G~~iLRieDtD~~r~~ 51 (350)
.+|.+||+++.|+|+++..
T Consensus 6 ~~~~~~~~kfg~It~EeA~ 24 (96)
T 2f40_A 6 HHGSKWIKFTTNLTPEEAK 24 (96)
T ss_dssp ---CCEEECCCSCTTTTTH
T ss_pred cccchheeecCCCCHHHHH
Confidence 5678999999999998764
No 81
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=26.73 E-value=1.1e+02 Score=18.59 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=19.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHhCC
Q psy2381 252 IMYYKKKGFLPEAILNYLARLGW 274 (350)
Q Consensus 252 l~~l~~~G~~peal~~~l~~lG~ 274 (350)
|..|.+.||+.+..+..|..-+|
T Consensus 8 i~~L~~mGf~~~~a~~AL~~~~~ 30 (40)
T 1z96_A 8 IAQLVSMGFDPLEAAQALDAANG 30 (40)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC
Confidence 67888999999988888877665
No 82
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA pesticide, structural genomics, structural genomics consort transferase; HET: A3P PCI; 1.80A {Homo sapiens} PDB: 2ad1_A*
Probab=26.43 E-value=46 Score=30.22 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=37.7
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...--++++.||.-. .-...+.+.++.||+.+++
T Consensus 168 g~~~~g~~~~~l~~~~~~~~~~~vl~l~YEdL~~-----dp~~~v~ri~~FLG~~~~~ 220 (298)
T 2gwh_A 168 GKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKK-----NPKHEIQKLAEFIGKKLDD 220 (298)
T ss_dssp TCSBTCCHHHHHHHHHHHTTSSSEEEEEHHHHHH-----CHHHHHHHHHHHHTCCCCH
T ss_pred CCCCCCcHHHHHHHHHHhcCCCCEEEEEHHHhhh-----CHHHHHHHHHHHcCCCCCH
Confidence 4456666667777888777666678999999732 2335667778899999875
No 83
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A* 3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Probab=24.80 E-value=49 Score=29.91 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=37.2
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...-.++++.||.-. .-...+.+.++.||+.+++
T Consensus 165 g~~~~g~~~~~~~~~~~~~~~~~vl~v~YEdL~~-----dp~~~~~ri~~FLG~~~~~ 217 (295)
T 1ls6_A 165 GEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKE-----NPKREIQKILEFVGHSLPE 217 (295)
T ss_dssp TCSTTCCHHHHHHHHHHHTTTSCEEEEEHHHHHH-----CHHHHHHHHHHHHTCCCCH
T ss_pred CCCceecHHHHHHHHHHhccCcCeEEEEhHHhhh-----hhHHHHHHHHHHhCCCCCH
Confidence 3445666666777787776666678999999732 2335667778899999875
No 84
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Probab=24.59 E-value=53 Score=29.72 Aligned_cols=53 Identities=25% Similarity=0.257 Sum_probs=37.5
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...-.++++.||.-. .-...+.+.++.||+.|++
T Consensus 165 g~~~~g~y~~h~~~~~~~~~~~~vl~l~YEdL~~-----dp~~~~~~i~~FLG~~~~~ 217 (295)
T 2zpt_X 165 GQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKE-----NPKCEIQKILKFLEKDIPE 217 (295)
T ss_dssp TCSTTCCHHHHHHHHHHHTTTSCEEEEEHHHHHH-----CHHHHHHHHHHHTTCCCCH
T ss_pred CCCccccHHHHHHHHHHhcCCCCeEEEEhHHhHh-----CHHHHHHHHHHHcCCCCCH
Confidence 4455666666677787776656678899999732 2345677778899999885
No 85
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*
Probab=24.56 E-value=52 Score=29.91 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=38.8
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|....-+..|+-++...-.++++.||.-. .-...+.+.++.||+.+++
T Consensus 167 g~~~~g~~~~h~~~~~~~~~~~~vl~l~YEdL~~-----dp~~~~~~i~~FLG~~~~~ 219 (297)
T 1aqu_A 167 GQVPYGSWYDHVKAWWEKSKNSRVLFMFYEDMKE-----DIRREVVKLIEFLERKPSA 219 (297)
T ss_dssp TCSTTCCHHHHHHHHHHHTTSTTEEEEEHHHHHH-----CHHHHHHHHHHHTTCCCCH
T ss_pred CCcccccHHHHHHHHHHhcccCCeEEEEhhhhhh-----hHHHHHHHHHHHcCCCCCH
Confidence 4456677777777888777666788999999732 2345677778899999885
No 86
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*
Probab=22.72 E-value=56 Score=29.77 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=36.9
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...-.++++.||.-. .-...+.+.++.||+.+++
T Consensus 175 g~~~~g~~~~~v~~~~~~~~~~~vl~l~YEdL~~-----dp~~~v~ri~~FLG~~~~~ 227 (305)
T 2reo_A 175 GKVVGGSWFDHVKGWWAAKDMHRILYLFYEDIKK-----DPKREIEKILKFLEKDISE 227 (305)
T ss_dssp TCSTTCCHHHHHHHHHHHTTTSCEEEEEHHHHHH-----CHHHHHHHHHHHHTCCCCH
T ss_pred CCCCCCcHHHHHHHHHHhcCCCCEEEEEHHHHHH-----hHHHHHHHHHHHcCCCCCH
Confidence 3345566666677787776656678899999732 2335667778899999875
No 87
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein structure initiative, structural genomics consortium, SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens} SCOP: c.37.1.5
Probab=22.69 E-value=54 Score=29.71 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=36.7
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...-.++++.||.-. .-...+.+.++.||+.+++
T Consensus 166 g~~~~g~~~~~~~~~~~~~~~~~vl~v~YEdL~~-----dp~~~~~ri~~FLG~~~~~ 218 (296)
T 3bfx_A 166 GKVVWGSWFDHVKGWWEMKDRHQILFLFYEDIKR-----DPKHEIRKVMQFMGKKVDE 218 (296)
T ss_dssp TCSBTCCHHHHHHHHHHHTTTSEEEEEEHHHHHH-----CHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCcHHHHHHHHHHhCCCcCEEEEEhHHHHh-----hhHHHHHHHHHHhCCCCCH
Confidence 4455666666777787766555568889999732 2235667778899999885
No 88
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Probab=22.39 E-value=41 Score=30.55 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=37.4
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...-.+++|.||.-. .-...+.+.++.||+.+++
T Consensus 169 g~~~~g~~~~~l~~~~~~~~~~~vl~v~YEdL~~-----dp~~~~~ri~~FLG~~~~~ 221 (299)
T 1q20_A 169 GEVQFGSWFDHIKGWLRMKGKDNFLFITYEELQQ-----DLQGSVERICGFLGRPLGK 221 (299)
T ss_dssp TCSTTSCHHHHHHHHGGGTTCTTEEEEEHHHHHH-----CHHHHHHHHHHHHTCCCCH
T ss_pred CCCccchHHHHHHHHHhcCCCCCEEEEEcHHhhh-----chHHHHHHHHHHcCCCCCH
Confidence 5566677666777777666555678999999722 2335667778899999885
No 89
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=22.29 E-value=2.3e+02 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.1
Q ss_pred cCCCHHHHHHHHHHhCCCCCCccccCHHHHHHhcc
Q psy2381 258 KGFLPEAILNYLARLGWSHGNEEIFSIKQFCYWFN 292 (350)
Q Consensus 258 ~G~~peal~~~l~~lG~~~~~~~~~~~~el~~~f~ 292 (350)
.|++.|+|+.||.+ . ++|..||+..|.
T Consensus 8 ~~iTEe~VrryL~r-k-------PmTt~dLl~KFK 34 (73)
T 1i27_A 8 VQVTEDAVRRYLTR-K-------PMTTKDLLKKFQ 34 (73)
T ss_dssp SSCCHHHHHHHHHH-S-------CBCHHHHHHTSC
T ss_pred CCcCHHHHHHHHHc-C-------CccHHHHHHHHH
Confidence 47889999999984 1 368899999887
No 90
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} SCOP: c.37.1.5
Probab=22.22 E-value=43 Score=31.48 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=38.2
Q ss_pred CcCchhhHHHHHHHHHHHHHcCCeEEEEecCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy2381 14 GNLHIGGIRTALFSWAYARHFNGIFILRIEDTDINRSTLSATQTIIDGMKWLGLNYDE 71 (350)
Q Consensus 14 G~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~r~~~~~~~~i~~dL~wlGl~~de 71 (350)
|....|.....+..|+-++...-.++++.||.-. .-...+.+.++.||+.|++
T Consensus 167 g~~~~g~y~~hl~~~~~~~~~~~vl~l~YEDL~~-----Dp~~~l~rI~~FLGl~~~~ 219 (350)
T 1q1q_A 167 GEVQFGSWFDHIKGWLRMKGKDNFLFITYEELQQ-----DLQGSVERICGFLGRPLGK 219 (350)
T ss_dssp TCSTTCCHHHHHHHHHTTTTCSSEEEEEHHHHHH-----CHHHHHHHHHHHHTCCCCH
T ss_pred CCccccHHHHHHHHHHHcCCCcCEEEEEhHHhhh-----CHHHHHHHHHHHcCCCCCH
Confidence 5566777777777887666555678899999732 2345677778899999885
No 91
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.76 E-value=53 Score=24.63 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred HhhcCCHHHHHHHHHHHHHhchh
Q psy2381 316 YIKSYDDKKLLNLIQPIIKKKKQ 338 (350)
Q Consensus 316 ~i~~~~~~~~~~~~~~~~~~~~~ 338 (350)
.++..+|++|.++++.||+..+.
T Consensus 82 vlkstdpeeltqrvreflktags 104 (112)
T 2lnd_A 82 VLKSTDPEELTQRVREFLKTAGS 104 (112)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTS
T ss_pred hhccCCHHHHHHHHHHHHHhccc
Confidence 57788899999999999987653
Done!