BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2382
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 141/201 (70%), Gaps = 4/201 (1%)
Query: 13 ISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLK 72
++ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE QL
Sbjct: 20 LAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLD 79
Query: 73 LDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFP 132
L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FP
Sbjct: 80 LPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFP 139
Query: 133 LQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKI 192
L+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I+F+ HN+ +
Sbjct: 140 LRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMAL 199
Query: 193 GTISNLICYRYKYENIIKRKA 213
TI +L+ YR +E RKA
Sbjct: 200 VTIEDLVAYRQAHE----RKA 216
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 215 bits (547), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 141/201 (70%), Gaps = 4/201 (1%)
Query: 13 ISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLK 72
++ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE QL
Sbjct: 20 LAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLD 79
Query: 73 LDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFP 132
L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+ +PGH+FP
Sbjct: 80 LPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFP 139
Query: 133 LQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKI 192
L+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I+F+ HN+ +
Sbjct: 140 LRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMAL 199
Query: 193 GTISNLICYRYKYENIIKRKA 213
TI +L+ YR +E RKA
Sbjct: 200 VTIEDLVAYRQAHE----RKA 216
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 138/201 (68%), Gaps = 4/201 (1%)
Query: 13 ISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLK 72
+ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE QL
Sbjct: 20 LDALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLD 79
Query: 73 LDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFP 132
L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A AKPSD+ +PGH+FP
Sbjct: 80 LPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFP 139
Query: 133 LQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKI 192
L+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I F+ HN+ +
Sbjct: 140 LRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAV 199
Query: 193 GTISNLICYRYKYENIIKRKA 213
TI +L+ YR +E RKA
Sbjct: 200 VTIEDLVAYRQAHE----RKA 216
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 135/200 (67%)
Query: 2 YNKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICM 61
+ + + I L+ G ++++D E+RENEGD++ +++ +T + ++ G++C+
Sbjct: 12 FGTPVERVERAIDALRNGRGVMVLDDESRENEGDMVFAAEAMTLEQMALTIRHGSGIVCL 71
Query: 62 TLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKP 121
+T++ QL L MM N+S F T FTV+IEAA GVTTG+SA+DR TI+ A + AKP
Sbjct: 72 CITDERRQQLDLPMMVTHNSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIADNAKP 131
Query: 122 SDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDL 181
+D+ +PGH+FPL+ + GGVL R GHTEA DL LAG P+ V+CE+ NDDG+MA P++
Sbjct: 132 ADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEV 191
Query: 182 IKFSKLHNIKIGTISNLICY 201
I F+KLH++ + TI +L Y
Sbjct: 192 IAFAKLHDMPVVTIDDLAAY 211
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 131/203 (64%), Gaps = 2/203 (0%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ S + ++++ G +I++D E+RENEGD+I +++ TP + FM +Y G +C+ L
Sbjct: 4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 63
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
C +L L M N GT +TV+++A NG+ TGISASDRA T+++ + + D
Sbjct: 64 AICDRLGLLPMYAVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFT 123
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARLPDLIK 183
+PGH+ PL+AK GGVL R GHTEA DL ++AGL P+ ICEI++ D+G+MA +L
Sbjct: 124 RPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRV 183
Query: 184 FSKLHNIKIGTISNLICYRYKYE 206
F+ H + + TI++LI +R K+E
Sbjct: 184 FADEHGLALITIADLIEWRRKHE 206
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 131/203 (64%), Gaps = 2/203 (0%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ S + ++++ G +I++D E+RENEGD+I +++ TP + FM +Y G +C+ L
Sbjct: 10 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 69
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
C +L L M N GT +TV+++A NG+ TGISASDRA T+++ + + D
Sbjct: 70 AICDRLGLLPMYAVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFT 129
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARLPDLIK 183
+PGH+ PL+AK GGVL R GHTEA DL ++AGL P+ ICEI++ D+G+MA +L
Sbjct: 130 RPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRV 189
Query: 184 FSKLHNIKIGTISNLICYRYKYE 206
F+ H + + TI++LI +R K+E
Sbjct: 190 FADEHGLALITIADLIEWRRKHE 212
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 128/202 (63%), Gaps = 2/202 (0%)
Query: 1 MYNKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC 60
M N F + +E + K G +I++D E+RENEGD+I++++ +T + F+ +Y+ G +C
Sbjct: 1 MTNIF-TPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVC 59
Query: 61 MTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAK 120
+ L+E+ QL+L M + GT +T++ + A G TTGISA DRA T + ++ +K
Sbjct: 60 VPLSEERANQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 121 PSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMARLP 179
P D ++PGHI PL+A G + R GHTEA L+ LAGL P+ VICE++ D DG M RL
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 180 DLIKFSKLHNIKIGTISNLICY 201
D I+F K H IKI I+ L+ Y
Sbjct: 180 DCIQFGKKHGIKIININQLVEY 201
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 122/210 (58%), Gaps = 14/210 (6%)
Query: 11 EIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQ 70
++I K G ++++D +RENE D+I++++ VT + FM +++ GLIC LT +
Sbjct: 17 DVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTA 76
Query: 71 LKLDMMTKKNNSSFGTNFTVSIEAAN-GVTTGISASDRAHTIKVASSKKAKPSDIVQPGH 129
L L M N GT +TVS++A + TTGISA DRA ++ ++ A+PS +PGH
Sbjct: 77 LDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGH 136
Query: 130 IFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGT------------MAR 177
+FPL+A GGV R GHTEAG +L +LAG P AVI EI+ DDG M R
Sbjct: 137 VFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIV-DDGQEVEGRAVRAAPGMLR 195
Query: 178 LPDLIKFSKLHNIKIGTISNLICYRYKYEN 207
+ + F++ +K+ TI ++I + K E
Sbjct: 196 GDECVAFARRWGLKVCTIEDMIAHVEKTEG 225
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 23/208 (11%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+++ ++ I LK G +I++ DS+ RE E D++++S F+TP I M K A GLIC L
Sbjct: 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHP 60
Query: 66 KHCIQLKLDMMTK----------------KNNSSFGTNFTVSIEAANGVT-TGISASDRA 108
C +L + M N+ + + SI + T TGI+ +DRA
Sbjct: 61 DICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRKTFTGITDNDRA 120
Query: 109 HTIKVASS--KKAKPSDIVQ----PGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPS 162
TIK + K+ + +D + PGH+ L+A +G V R GHTE L +LA L P
Sbjct: 121 FTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLVPI 180
Query: 163 AVICEILNDDGTMARLPDLIKFSKLHNI 190
ICE++ DDG + ++++ HN+
Sbjct: 181 TTICEMMGDDGNAMSKNETKRYAEKHNL 208
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 23/208 (11%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+++ ++ I LK G +I++ DS+ RE E D++++S F+TP I M K A GLIC L
Sbjct: 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHP 60
Query: 66 KHCIQLKLDMMTK----------------KNNSSFGTNFTVSIEAANGVT-TGISASDRA 108
C +L + M N+ + + SI + T TGI+ +DRA
Sbjct: 61 DICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRKTFTGITDNDRA 120
Query: 109 HTIKVASS--KKAKPSDIVQ----PGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPS 162
TIK + K+ + +D + PG + L+A +G V R GHTE L +LA L P
Sbjct: 121 FTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPI 180
Query: 163 AVICEILNDDGTMARLPDLIKFSKLHNI 190
ICE++ DDG + ++++ HN+
Sbjct: 181 TTICEMMGDDGNAMSKNETKRYAEKHNL 208
>pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-s10
Transcription Antitermination Complex.
pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex
Length = 141
Score = 89.7 bits (221), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 67/125 (53%)
Query: 395 EFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII 454
E A+Q +Y W + D+ +E + VD YF +L GV + +L + +
Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 72
Query: 455 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKV 514
R + EL +E VL I YEL +PYKV INEAIEL KSFG D +K+VN +LDK
Sbjct: 73 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 132
Query: 515 ALNIR 519
A IR
Sbjct: 133 APVIR 137
>pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
Length = 139
Score = 89.4 bits (220), Expect = 5e-18, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 67/125 (53%)
Query: 395 EFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII 454
E A+Q +Y W + D+ +E + VD YF +L GV + +L + +
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 70
Query: 455 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKV 514
R + EL +E VL I YEL +PYKV INEAIEL KSFG D +K+VN +LDK
Sbjct: 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 130
Query: 515 ALNIR 519
A IR
Sbjct: 131 APVIR 135
>pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
Length = 141
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 67/125 (53%)
Query: 395 EFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII 454
E A+Q +Y W + D+ +E + VD YF +L GV + +L + +
Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL 72
Query: 455 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKV 514
R + EL +E VL I YEL +PYKV INEAIEL KSFG + +K+VN +LDK
Sbjct: 73 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAENSHKFVNGVLDKA 132
Query: 515 ALNIR 519
A IR
Sbjct: 133 APVIR 137
>pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSW|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|1VSX|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|B Chain B, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|C Chain C, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|D Chain D, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|E Chain E, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|F Chain F, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|G Chain G, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|H Chain H, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|I Chain I, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|J Chain J, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|K Chain K, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|L Chain L, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|M Chain M, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|N Chain N, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|O Chain O, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|P Chain P, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Q Chain Q, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|R Chain R, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|S Chain S, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|T Chain T, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|U Chain U, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|V Chain V, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|W Chain W, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|X Chain X, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Y Chain Y, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|Z Chain Z, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|1 Chain 1, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|2 Chain 2, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|3 Chain 3, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
pdb|3JV8|4 Chain 4, Crystal Structure Of Lumazine Synthase From Bacillus
Anthracis
Length = 153
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 290 NGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNI 349
+G +E +I VPGA EIPL K + K++ +I +G +IRG T H++ + NE +
Sbjct: 40 HGVEENDIDVAWVPGAFEIPLIAKKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGV 99
Query: 350 MQISIKNNIPIINAILTTETIEQANSRILTK 380
+S++ +IP+I +LTTETIEQA R TK
Sbjct: 100 ASLSLQTDIPVIFGVLTTETIEQAIERAGTK 130
>pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
pdb|1ZIS|A Chain A, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|B Chain B, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|C Chain C, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|D Chain D, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|E Chain E, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|F Chain F, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|G Chain G, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|H Chain H, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|I Chain I, Recombinant Lumazine Synthase (hexagonal Form)
pdb|1ZIS|J Chain J, Recombinant Lumazine Synthase (hexagonal Form)
Length = 154
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 302 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 361
VPGA EIP A K + + KK++ +I +G +IRG T H++ + NE I Q + +P+I
Sbjct: 53 VPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVI 112
Query: 362 NAILTTETIEQANSRILTK 380
I+TTE IEQA R TK
Sbjct: 113 FGIVTTENIEQAIERAGTK 131
>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1NQU|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQV|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQW|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQX|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
Length = 154
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 58/91 (63%)
Query: 290 NGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNI 349
+G +E++I + VPG+ EIP+A + + + + +IAIGV+IRG T HF+ IA+E +
Sbjct: 41 HGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGL 100
Query: 350 MQISIKNNIPIINAILTTETIEQANSRILTK 380
+S++ PI ++T +T+EQA R TK
Sbjct: 101 ANLSLELRKPITFGVITADTLEQAIERAGTK 131
>pdb|3MK3|A Chain A, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|B Chain B, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|C Chain C, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|D Chain D, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|E Chain E, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|F Chain F, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|G Chain G, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|H Chain H, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|I Chain I, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|J Chain J, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|K Chain K, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|L Chain L, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|M Chain M, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|N Chain N, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|O Chain O, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|P Chain P, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Q Chain Q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|R Chain R, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|S Chain S, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|T Chain T, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|U Chain U, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|V Chain V, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|W Chain W, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|X Chain X, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Y Chain Y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|Z Chain Z, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|1 Chain 1, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|2 Chain 2, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|3 Chain 3, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|4 Chain 4, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|5 Chain 5, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|6 Chain 6, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|7 Chain 7, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|8 Chain 8, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|9 Chain 9, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|AA Chain a, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|BB Chain b, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|CC Chain c, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|DD Chain d, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|EE Chain e, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|FF Chain f, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|GG Chain g, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|HH Chain h, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|II Chain i, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|JJ Chain j, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|KK Chain k, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|LL Chain l, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|MM Chain m, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|NN Chain n, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|OO Chain o, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|PP Chain p, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|QQ Chain q, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|RR Chain r, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|SS Chain s, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|TT Chain t, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|UU Chain u, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|VV Chain v, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|WW Chain w, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|XX Chain x, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3MK3|YY Chain y, Crystal Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|A Chain A, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|B Chain B, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|C Chain C, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|D Chain D, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|E Chain E, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|F Chain F, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|G Chain G, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|H Chain H, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|I Chain I, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|J Chain J, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|K Chain K, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|L Chain L, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|M Chain M, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|N Chain N, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|O Chain O, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|P Chain P, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Q Chain Q, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|R Chain R, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|S Chain S, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|T Chain T, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|U Chain U, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|V Chain V, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|W Chain W, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|X Chain X, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Y Chain Y, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|Z Chain Z, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|1 Chain 1, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|2 Chain 2, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|3 Chain 3, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
pdb|3NQ4|4 Chain 4, 30mer Structure Of Lumazine Synthase From Salmonella
Typhimurium Lt2
Length = 156
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 293 QEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQI 352
++ NI + VPGA E+PLA + + + K++ ++A+G +IRG T HFE +A + + +
Sbjct: 45 KDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASV 104
Query: 353 SIKNNIPIINAILTTETIEQANSRILTK 380
+ + +P+ +LTTE+IEQA R TK
Sbjct: 105 AQDSGVPVAFGVLTTESIEQAIERAGTK 132
>pdb|2JFB|A Chain A, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|B Chain B, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|C Chain C, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|D Chain D, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|E Chain E, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|F Chain F, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|G Chain G, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|H Chain H, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|I Chain I, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|J Chain J, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|K Chain K, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|L Chain L, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|M Chain M, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|N Chain N, 3d Structure Of Lumazine Synthase From Candida Albicans
pdb|2JFB|O Chain O, 3d Structure Of Lumazine Synthase From Candida Albicans
Length = 164
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 291 GAQEKNILHISVPGALEIPLALKNIIQIKK-----FNVLIAIGVIIRGETYHFELIANET 345
G +E+NI+ +VPG+ E+P K ++ +K + +I IGV+I+G T HFE I + T
Sbjct: 47 GVKEENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIGVLIKGSTMHFEYICDST 106
Query: 346 ISNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRH 391
+M+++ + IP+I +LT T EQA +R LI+ K H
Sbjct: 107 THQLMKLNFELGIPVIFGVLTCLTDEQAEAR----AGLIEGKMHNH 148
>pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|B Chain B, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|C Chain C, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|D Chain D, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|E Chain E, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|F Chain F, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|G Chain G, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|H Chain H, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|I Chain I, Product Complex Of Lumazine Synthase From Candida Glabrata
pdb|4GEF|J Chain J, Product Complex Of Lumazine Synthase From Candida Glabrata
Length = 179
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 291 GAQEKNILHISVPGALEIPLALKNII--QIKK---FNVLIAIGVIIRGETYHFELIANET 345
G +E+NI+ +VPG+ E+P K Q KK +V+I IGV+I+G T HFE I++ T
Sbjct: 58 GVKEENIIVETVPGSFELPYGSKRFAEKQAKKGEPLDVVIPIGVLIKGSTMHFEYISDST 117
Query: 346 ISNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGI 401
IM + K NIP+I +LT T EQA L + + + KT + ++ +
Sbjct: 118 TQAIMNLQDKINIPVIFGLLTCLTEEQA----LARAGIDEGKTMHNHGEDWGAAAV 169
>pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|B Chain B, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|C Chain C, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|D Chain D, Lumazine Synthase From Saccharomyces Cerevisiae
pdb|1EJB|E Chain E, Lumazine Synthase From Saccharomyces Cerevisiae
Length = 168
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 291 GAQEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANET 345
G +E NI+ +VPG+ E+P K + K +V+I IGV+I+G T HFE I++ T
Sbjct: 46 GVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISDST 105
Query: 346 ISNIMQISIKNNIPIINAILTTETIEQANSR 376
+M + K ++P+I +LT T EQA +R
Sbjct: 106 THALMNLQEKVDMPVIFGLLTCMTEEQALAR 136
>pdb|2O6H|A Chain A, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|B Chain B, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|C Chain C, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|D Chain D, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2O6H|E Chain E, Lumazine Synthase Ribh1 From Brucella Melitensis (gene
Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 300 ISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
++VPGALEIP + + +++ +A+G +IRGETYHF++++NE+ + +S+
Sbjct: 48 VTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTDLSV 107
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +I I N ILT E EQA R
Sbjct: 108 EESIAIGNGILTVENEEQAWVR 129
>pdb|2F59|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|B Chain B, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|C Chain C, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|D Chain D, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2F59|E Chain E, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2I0F|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|B Chain B, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|C Chain C, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|D Chain D, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
pdb|2I0F|E Chain E, Lumazine Synthase Ribh1 From Brucella Abortus (gene
Bruab1_0785, Swiss-prot Entry Q57dy1)
Length = 157
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 300 ISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
++VPGALEIP + + +++ +A+G +IRGETYHF++++NE+ + +S+
Sbjct: 48 VTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTDLSV 107
Query: 355 KNNIPIINAILTTETIEQA 373
+ +I I N ILT E EQA
Sbjct: 108 EESIAIGNGILTVENEEQA 126
>pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C41|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 200
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 36/122 (29%)
Query: 291 GAQEKNILHISVPGALEIPLALKNIIQIKK------------------------------ 320
G +E NI+ SVPG+ E+P+A++ + +
Sbjct: 45 GVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTT 104
Query: 321 ------FNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTETIEQAN 374
F+ LIAIGV+I+GET HFE IA+ +M++ + +P+I +LT T +QA
Sbjct: 105 ASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAK 164
Query: 375 SR 376
+R
Sbjct: 165 AR 166
>pdb|1TZT|A Chain A, T. Maritima Nusb, P21
pdb|1TZT|B Chain B, T. Maritima Nusb, P21
pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
Length = 142
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 387 KTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEI--SNFYKVDKKYFYLILRGVINDIN 444
KTPR R R + ++Q F D +L E ++EI + K K+ +RG+ +++
Sbjct: 2 KTPRRRMRLAVFKALFQHEFRR-DEDL-EQILEEILDETYDKKAKEDARRYIRGIKENLS 59
Query: 445 FLRYDLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDG 503
+ +S +++ S+N LS ++ VL + TYEL IP +V I+EAIE+ K +G +
Sbjct: 60 MIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENS 119
Query: 504 YKYVNKILDKVA 515
K+VN ILD++A
Sbjct: 120 GKFVNGILDRIA 131
>pdb|1KZ9|A Chain A, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|B Chain B, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|C Chain C, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|D Chain D, Mutant Enzyme L119f Lumazine Synthase From S.pombe
pdb|1KZ9|E Chain E, Mutant Enzyme L119f Lumazine Synthase From S.pombe
Length = 159
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 295 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVIFGLLTVLNEEQALYR 133
>pdb|1KZ6|A Chain A, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|B Chain B, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|C Chain C, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|D Chain D, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
pdb|1KZ6|E Chain E, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe
Length = 159
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 295 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSYELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVIFGLLTVLNEEQALYR 133
>pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|B Chain B, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|C Chain C, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|D Chain D, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|E Chain E, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYX|A Chain A, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|B Chain B, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|C Chain C, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|D Chain D, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|E Chain E, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYY|A Chain A, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|B Chain B, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|C Chain C, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|D Chain D, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|E Chain E, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
Length = 159
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 295 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.pombe
Length = 159
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 295 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSYELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.pombe
Length = 159
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 295 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
Length = 159
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 295 KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISI 354
+NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ + +M++ +
Sbjct: 52 ENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGL 111
Query: 355 KNNIPIINAILTTETIEQANSR 376
+ +P+I +LT EQA R
Sbjct: 112 DSGVPVILGLLTVLNEEQALYR 133
>pdb|1W19|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W19|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Propane 1-Phosphate
pdb|1W29|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|1W29|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Butane 1-Phosphate
pdb|2C92|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C92|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Pentane 1 Phosphate
pdb|2C94|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C94|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
1,1 Difluoropentane-1-Phosphate
pdb|2C97|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C97|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
4-(6-Chloro-2,4-Dioxo-1,2,3,4-Tetrahydropyrimidin-5-Yl)
Butyl Phosphate
pdb|2C9B|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9B|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
pdb|2C9D|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2C9D|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl)
Hexane 1-Phosphate
pdb|2VI5|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|B Chain B, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|C Chain C, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|D Chain D, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|E Chain E, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|F Chain F, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|G Chain G, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|H Chain H, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|I Chain I, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
pdb|2VI5|J Chain J, Lumazine Synthase From Mycobacterium Tuberculosis Bound To
N-6-(Ribitylamino)pyrimidine-2,4(1h,3h)-Dione-5-Yl-
Propionamide
Length = 160
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 300 ISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 359
+ V GA+EIP+ + + + + ++A+GV+IRG+T HF+ + + + ++S+ ++ P
Sbjct: 54 VRVLGAIEIPVVAQELA--RNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTP 111
Query: 360 IINAILTTETIEQANSR 376
I N +LTT T EQA R
Sbjct: 112 IANGVLTTNTEEQALDR 128
>pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|B Chain B, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|C Chain C, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|D Chain D, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|E Chain E, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|F Chain F, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|G Chain G, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|H Chain H, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|I Chain I, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|J Chain J, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|K Chain K, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|L Chain L, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|M Chain M, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|N Chain N, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|O Chain O, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|P Chain P, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|Q Chain Q, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|R Chain R, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|S Chain S, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
pdb|1C2Y|T Chain T, Crystal Structures Of A Pentameric Fungal And An
Icosahedral Plant Lumazine Synthase Reveals The
Structural Basis For Differences In Assembly
Length = 156
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 46/75 (61%)
Query: 302 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 361
VPGA E+ + + + + K++ ++ +G +++G+T H++ + N S ++ + + +P +
Sbjct: 53 VPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCV 112
Query: 362 NAILTTETIEQANSR 376
+LT + ++QA +R
Sbjct: 113 FGVLTCDNMDQAINR 127
>pdb|1T13|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1T13|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|1XN1|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|F Chain F, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|G Chain G, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|H Chain H, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|I Chain I, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
pdb|1XN1|J Chain J, Crystal Structure Of Lumazine Synthase From Brucella
Abortus (orthorhombic Form At 3.05 Angstroms)
Length = 158
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 302 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 361
VPGA EIPL K + + ++ ++ +I G Y + +A I+ +MQ+ ++ +P++
Sbjct: 51 VPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVL 110
Query: 362 NAILT 366
+ +LT
Sbjct: 111 SVVLT 115
>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
Length = 158
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 302 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 361
VPGA EIPL K + + ++ ++ +I G Y + +A I+ +MQ+ ++ +P++
Sbjct: 51 VPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVL 110
Query: 362 NAILT 366
+ +LT
Sbjct: 111 SVVLT 115
>pdb|2OBX|A Chain A, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|B Chain B, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|C Chain C, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|D Chain D, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|E Chain E, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|F Chain F, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|G Chain G, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|H Chain H, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|I Chain I, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
pdb|2OBX|J Chain J, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene
Mll7281, Swiss- Prot Entry Q986n2) Complexed With
Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h)
Pyrimidinedione
Length = 157
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 302 VPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 361
VPGA EIPL + + + ++ ++ ++ G Y E +A+ I +M + + +P++
Sbjct: 52 VPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVL 111
Query: 362 NAILT 366
+A+LT
Sbjct: 112 SAVLT 116
>pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
Length = 156
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 457 SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVAL 516
+++ L +++ +L + +EL +P V+++EA++L K D +VN +L +V L
Sbjct: 81 TLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVML 140
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHA 268
+KR AE + T +G+F ++ + + H+ L+YG I+ + + ++ + D L +
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 269 KTSSC 273
C
Sbjct: 63 LRCDC 67
>pdb|1OLA|A Chain A, The Structural Basis Of Multispecificity In The
Oligopeptide-binding Protein Oppa
pdb|2OLB|A Chain A, Oligopeptide Binding Protein (Oppa) Complexed With Tri-
Lysine
pdb|1OLC|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With
Lys-Lys- Lys-Ala
pdb|1JEV|A Chain A, Oligo-peptide Binding Protein (oppa) Complexed With Kwk
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
pdb|1JEU|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kek
pdb|2RKM|A Chain A, Structure Of Oppa Complexed With Lys-Lys
pdb|1B32|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kmk
pdb|1B3F|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Khk
pdb|1B3G|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kik
pdb|1B3L|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3L|C Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B7H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Norleucyl-Lysine
pdb|1B0H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Napthylalanyl-Lysine
pdb|1B1H|A Chain A, Oligo-Peptide Binding ProteinTRIPEPTIDE (LYS HPE LYS)
Complex
pdb|1B2H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Ornithyl-Lysine
pdb|1B3H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Cyclohexylalanyl-Lysine
pdb|1B4H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminobutyric Acid-Lysine
pdb|1B5H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Diaminopropanoic Acid-Lysine
pdb|1B6H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Norvalyl- Lysine
pdb|1B52|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
pdb|1B51|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ksk
pdb|1B5I|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
pdb|1B5J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kqk
pdb|1B46|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kpk
pdb|1B9J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Klk
pdb|1QKA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Krk
pdb|1QKB|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kvk
pdb|1B4Z|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kdk
pdb|1B58|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kyk
pdb|1B40|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kfk
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
pdb|1RKM|A Chain A, Structure Of Oppa
Length = 517
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 390 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDK---KYFYLI--LRGVINDIN 444
R+R+ E + +NNM + L + KEI N +VD Y+Y I + ND+
Sbjct: 235 RYRSGEIDM------TYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVR 288
Query: 445 FLRYDLSLIIDRSI 458
+R L L +DR I
Sbjct: 289 -VRTALKLALDRDI 301
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 304 GALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETIS-NIMQISIKNNIPIIN 362
G L IP + + + I +LI GV IRG +L A ++ +++++S
Sbjct: 85 GELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYD------- 137
Query: 363 AILTTETIEQANSRILTKVNLIKNKTPRH-----RAREFALQGIYQWLFNNMDVNLIET 416
++TI R L + + N T A + ++ +Y W+F+N+ VN +ET
Sbjct: 138 ----SDTI----GRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVXVNEVET 188
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 304 GALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETIS-NIMQISIKNNIPIIN 362
G L IP + + + I +LI GV IRG +L A ++ +++++S
Sbjct: 85 GELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYD------- 137
Query: 363 AILTTETIEQANSRILTKVNLIKNKTPRH-----RAREFALQGIYQWLFNNMDVNLIET 416
++TI R L + + N T A + ++ +Y W+F+N+ VN +ET
Sbjct: 138 ----SDTI----GRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVET 188
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 28 ENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLT--EKHCIQLKLDMMTKKNNSS 83
ENR+ ++D VT +A + KY G+ C T+T EK + KL M K N +
Sbjct: 44 ENRD------ATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGT 95
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 347 SNIMQISIKNNI----PIINAILTTETIEQANSRILTKVNLIKNKTP-RHRA--REFALQ 399
++ I + NNI P+ + E +++ N + + K+ I+ +T RH+ EF
Sbjct: 34 GDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93
Query: 400 GIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLR 447
G + T ++E SN Y + + F ++LR V+ +N LR
Sbjct: 94 GS------------LYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR 129
>pdb|3MVP|A Chain A, The Crystal Structure Of A TetrACRR TRANSCRIPTIONAL
REGULAT Streptococcus Mutans To 1.85a
pdb|3MVP|B Chain B, The Crystal Structure Of A TetrACRR TRANSCRIPTIONAL
REGULAT Streptococcus Mutans To 1.85a
Length = 217
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 207 NIIKRKAEYNINTLYGNF----KIIVYIDKINNDIHLTLIYGSI-----------NPNKI 251
N I +KA+ ++ TLY F I+ + K ND LT I+ I NP +
Sbjct: 50 NEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFLTTIFADINSQDSLDRFKKNPKEW 109
Query: 252 IPIWLNQQLSIFD-FLHAK 269
+ + +NQ L+ D HA+
Sbjct: 110 LNVLINQLLAAEDKIFHAQ 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,234,858
Number of Sequences: 62578
Number of extensions: 563277
Number of successful extensions: 1401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1350
Number of HSP's gapped (non-prelim): 51
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)