Query psy2382
Match_columns 527
No_of_seqs 489 out of 3213
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:35:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09319 bifunctional 3,4-dihy 100.0 8.1E-99 2E-103 803.4 30.0 364 3-383 2-376 (555)
2 PRK12485 bifunctional 3,4-dihy 100.0 2.3E-97 5E-102 768.8 30.1 354 5-382 2-362 (369)
3 PLN02831 Bifunctional GTP cycl 100.0 3.7E-97 8E-102 783.6 30.4 361 6-383 35-406 (450)
4 PRK09311 bifunctional 3,4-dihy 100.0 8.4E-97 2E-101 775.7 30.3 361 6-383 4-372 (402)
5 PRK09318 bifunctional 3,4-dihy 100.0 8.8E-95 1.9E-99 752.8 27.6 345 10-383 2-353 (387)
6 PRK14019 bifunctional 3,4-dihy 100.0 2.2E-94 4.7E-99 748.7 29.7 353 5-382 2-359 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 3.2E-94 6.9E-99 734.2 28.3 328 5-382 2-334 (339)
8 COG0108 RibB 3,4-dihydroxy-2-b 100.0 6.5E-75 1.4E-79 545.4 21.8 201 5-206 2-202 (203)
9 PRK08815 GTP cyclohydrolase; P 100.0 1.4E-73 3E-78 593.2 23.8 314 5-383 16-338 (375)
10 PRK00910 ribB 3,4-dihydroxy-2- 100.0 1.4E-71 3.1E-76 535.1 22.4 202 5-206 13-214 (218)
11 PRK01792 ribB 3,4-dihydroxy-2- 100.0 9.2E-71 2E-75 528.1 22.6 201 5-205 12-212 (214)
12 PRK00014 ribB 3,4-dihydroxy-2- 100.0 2.1E-69 4.6E-74 521.7 22.2 199 7-205 19-217 (230)
13 TIGR00506 ribB 3,4-dihydroxy-2 100.0 4.3E-69 9.3E-74 513.8 21.5 197 6-202 2-199 (199)
14 PF00926 DHBP_synthase: 3,4-di 100.0 5.4E-69 1.2E-73 512.3 17.0 194 9-202 1-194 (194)
15 PRK03353 ribB 3,4-dihydroxy-2- 100.0 1.7E-65 3.7E-70 497.1 22.8 202 5-206 12-213 (217)
16 PRK05773 3,4-dihydroxy-2-butan 100.0 7.4E-64 1.6E-68 483.2 21.2 191 8-202 2-217 (219)
17 KOG1284|consensus 100.0 2.5E-56 5.3E-61 444.6 10.5 286 6-297 63-353 (357)
18 COG0807 RibA GTP cyclohydrolas 100.0 1.1E-32 2.3E-37 261.4 6.7 158 208-383 2-166 (193)
19 PF00925 GTP_cyclohydro2: GTP 100.0 3.1E-31 6.7E-36 250.1 2.2 158 209-383 1-165 (169)
20 PRK00202 nusB transcription an 100.0 1.7E-28 3.6E-33 223.8 15.0 133 388-521 1-135 (137)
21 PF01029 NusB: NusB family; I 100.0 1.1E-28 2.4E-33 223.7 11.3 126 391-516 1-134 (134)
22 COG0781 NusB Transcription ter 100.0 4.4E-28 9.6E-33 223.2 13.8 137 386-522 6-149 (151)
23 PLN02404 6,7-dimethyl-8-ribity 100.0 2.4E-28 5.2E-33 221.6 11.4 113 281-401 26-139 (141)
24 TIGR01951 nusB transcription a 100.0 1.1E-27 2.4E-32 215.9 14.5 127 390-517 1-129 (129)
25 cd00619 Terminator_NusB Transc 99.9 2.4E-27 5.2E-32 214.1 14.2 128 390-517 1-129 (130)
26 TIGR00114 lumazine-synth 6,7-d 99.9 1.3E-27 2.7E-32 216.9 12.1 116 279-404 17-135 (138)
27 COG0054 RibH Riboflavin syntha 99.9 1E-27 2.2E-32 217.7 11.5 102 281-382 31-133 (152)
28 cd00620 Methyltransferase_Sun 99.9 9.8E-27 2.1E-31 209.2 14.7 123 392-517 2-125 (126)
29 PRK12419 riboflavin synthase s 99.9 7.4E-27 1.6E-31 215.0 12.0 112 281-404 29-148 (158)
30 PRK00061 ribH 6,7-dimethyl-8-r 99.9 2.1E-26 4.6E-31 212.7 13.7 114 279-402 29-145 (154)
31 PRK00393 ribA GTP cyclohydrola 99.9 3.7E-27 8E-32 227.4 7.6 158 209-383 3-167 (197)
32 PF00885 DMRL_synthase: 6,7-di 99.9 3.5E-26 7.6E-31 209.6 12.3 118 279-404 20-138 (144)
33 TIGR00505 ribA GTP cyclohydrol 99.9 1.3E-26 2.7E-31 222.8 7.8 156 210-382 1-163 (191)
34 TIGR01506 ribC_arch riboflavin 99.9 3.2E-25 6.8E-30 202.4 10.9 117 279-406 13-129 (151)
35 KOG3243|consensus 99.9 4.2E-25 9E-30 192.8 8.9 102 281-382 36-138 (158)
36 cd00641 GTP_cyclohydro2 GTP cy 99.9 1.2E-24 2.6E-29 209.5 7.4 157 209-382 2-165 (193)
37 cd00447 NusB_Sun RNA binding d 99.9 2.6E-23 5.7E-28 187.2 14.7 124 393-517 2-128 (129)
38 PRK14904 16S rRNA methyltransf 99.9 1.6E-22 3.4E-27 218.2 15.2 126 392-518 3-129 (445)
39 PRK10901 16S rRNA methyltransf 99.9 1.8E-22 4E-27 216.6 15.2 123 392-518 3-126 (427)
40 PRK14901 16S rRNA methyltransf 99.9 5.1E-22 1.1E-26 213.6 14.0 125 392-518 2-127 (434)
41 PRK14902 16S rRNA methyltransf 99.9 8.8E-22 1.9E-26 212.4 14.2 126 391-518 3-129 (444)
42 PRK09634 nusB transcription an 99.9 3.9E-21 8.4E-26 185.3 16.2 111 406-519 91-203 (207)
43 TIGR00563 rsmB ribosomal RNA s 99.8 1.6E-20 3.4E-25 201.6 13.5 122 394-519 1-122 (426)
44 PRK14903 16S rRNA methyltransf 99.8 1.7E-19 3.6E-24 193.8 13.9 119 392-518 4-123 (431)
45 PRK07198 hypothetical protein; 99.8 5.3E-19 1.2E-23 181.8 8.3 140 224-383 210-372 (418)
46 PRK06455 riboflavin synthase; 99.7 5.4E-16 1.2E-20 142.0 10.7 111 281-404 17-129 (155)
47 COG1731 Archaeal riboflavin sy 97.3 0.0033 7.1E-08 56.2 10.5 108 284-404 20-129 (154)
48 KOG1284|consensus 96.1 0.0029 6.3E-08 65.0 2.1 99 213-315 66-223 (357)
49 KOG3009|consensus 67.9 22 0.00048 38.8 8.2 166 10-196 30-204 (614)
50 PF09185 DUF1948: Domain of un 59.3 1.2E+02 0.0027 26.5 11.3 124 389-514 2-139 (140)
51 PF01976 DUF116: Protein of un 52.3 65 0.0014 30.2 7.6 76 263-366 62-138 (158)
52 PF06794 UPF0270: Uncharacteri 47.4 24 0.00051 28.7 3.3 22 7-28 37-58 (70)
53 COG1560 HtrB Lauroyl/myristoyl 44.2 67 0.0015 33.5 7.0 92 7-116 182-276 (308)
54 PRK04966 hypothetical protein; 39.0 33 0.00073 28.0 3.0 22 7-28 37-58 (72)
55 TIGR01446 DnaD_dom DnaD and ph 35.4 42 0.00091 26.6 3.1 51 461-517 13-63 (73)
56 PF13263 PHP_C: PHP-associated 34.1 30 0.00066 26.3 2.0 20 179-198 5-24 (56)
57 PRK00304 hypothetical protein; 32.5 80 0.0017 26.0 4.2 22 7-28 36-57 (75)
58 PRK11070 ssDNA exonuclease Rec 30.6 84 0.0018 35.7 5.5 91 8-114 58-150 (575)
59 COG1926 Predicted phosphoribos 28.9 1.1E+02 0.0025 30.1 5.4 59 9-67 106-186 (220)
60 COG3089 Uncharacterized protei 26.5 66 0.0014 25.8 2.7 21 7-27 37-57 (72)
61 PF12862 Apc5: Anaphase-promot 25.8 50 0.0011 27.7 2.1 53 464-516 40-92 (94)
62 PF07261 DnaB_2: Replication i 24.2 68 0.0015 25.4 2.5 33 484-517 31-63 (77)
63 PLN02880 tyrosine decarboxylas 22.3 1.5E+02 0.0033 32.8 5.6 48 145-192 224-272 (490)
64 COG0825 AccA Acetyl-CoA carbox 22.3 3.9E+02 0.0084 27.9 7.9 32 142-174 169-201 (317)
65 PF04472 DUF552: Protein of un 21.3 96 0.0021 24.9 2.9 22 4-25 7-28 (73)
66 cd03109 DTBS Dethiobiotin synt 21.3 1.8E+02 0.0039 26.0 5.0 50 144-194 82-131 (134)
67 COG4770 Acetyl/propionyl-CoA c 20.4 1.4E+02 0.0029 33.9 4.6 172 143-330 252-441 (645)
No 1
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=8.1e-99 Score=803.41 Aligned_cols=364 Identities=35% Similarity=0.555 Sum_probs=348.6
Q ss_pred ccccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCC
Q psy2382 3 NKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNS 82 (527)
Q Consensus 3 ~~~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~ 82 (527)
++.+++|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|++|++|+++||++|+||+|+..|++
T Consensus 2 ~~~~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~n~~ 81 (555)
T PRK09319 2 KIEFDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDRNTD 81 (555)
T ss_pred CCCcccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCcccccCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEeEecc--CCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCC
Q psy2382 83 SFGTNFTVSIEAA--NGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLT 160 (527)
Q Consensus 83 ~~~~~f~vsvd~~--~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~ 160 (527)
+++++||||||++ .|++|||||.|||+||+.||||+++|.||++|||||||++++|||+.|+|||||||||||||||.
T Consensus 82 ~~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~ 161 (555)
T PRK09319 82 SNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLY 161 (555)
T ss_pred CCCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCC
Confidence 9999999999987 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEE
Q psy2382 161 PSAVICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLT 240 (527)
Q Consensus 161 Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~a 240 (527)
||+|||||+++||+||+++++.+||++|+||+|+++||++||..+|++|++++++++||.||+|++++|++..++.||+|
T Consensus 162 PaaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvA 241 (555)
T PRK09319 162 PAGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVA 241 (555)
T ss_pred ceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC--CCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eeeecCCC-ccccHHHHHH
Q psy2382 241 LIYGSINP--NKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPG-ALEIPLALKN 314 (527)
Q Consensus 241 lv~G~~~~--~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG-~le~p~~a~~ 314 (527)
|++|+++. ++||||||||+|+|||+|||++|||+ +||+.||++|++ +|.| |+.|+++| ++.+++.+|.
T Consensus 242 LvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg----~QL~~AL~~Ia~--eG~GVlVYLrqEGRGiGL~nKl~aY~ 315 (555)
T PRK09319 242 LVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCR----MQLEAALKMIEN--EGEGVVVYLRQEGRGIGLINKLKAYS 315 (555)
T ss_pred EEcCCcccccCCCceEEEeccCcHHHHhcCCCCCCH----HHHHHHHHHHHh--cCCEEEEEeCCCCcchhHHHHHHHHh
Confidence 99999963 57999999999999999999999999 999999999999 9989 78888899 8999999999
Q ss_pred hhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhhc
Q psy2382 315 IIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 315 l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
+|+. +++||+..||+.. |.+.|.+.|+++. .||.+|.|.|||| .+..+++..|+++-+
T Consensus 316 LQd~G~DTveAn~~lG~~~--D~RdYgigAQIL~dLGI~kIrLLTNNP---------~Ki~~L~~~GIeVv~ 376 (555)
T PRK09319 316 LQDGGLDTVEANERLGFPA--DLRNYGVGAQILNDLGIKRLRLITNNP---------RKIAGLGGYGLEVVD 376 (555)
T ss_pred hhhcCCChhhhhhhcCCcc--cceehhHHHHHHHHcCCCEEEECCCCH---------HHHHHHHhCCCEEEE
Confidence 9886 5888889999966 7899998888885 6999999999999 688999999999654
No 2
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=2.3e-97 Score=768.80 Aligned_cols=354 Identities=39% Similarity=0.633 Sum_probs=328.4
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
.+.+|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|++++|++|+||+|++.|++++
T Consensus 2 ~~~~i~~ai~~l~~G~~viv~Dd~~rE~egdlv~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~~~~~~ 81 (369)
T PRK12485 2 AFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPSNGSVF 81 (369)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCcccccCCCCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+||||||+++|++|||||.|||+|||.||+|+++|+||++|||||||++++|||++|+|||||||||||||||.|++|
T Consensus 82 ~~~ftvsvda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~av 161 (369)
T PRK12485 82 STAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASV 161 (369)
T ss_pred CCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEEEEec
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYG 244 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G 244 (527)
+|||+++||+|++.+++.+||++|+||+++++||++||..+|++|+++++++|||.||+|++++|++..++.||+||++|
T Consensus 162 i~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv~G 241 (369)
T PRK12485 162 IVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVMG 241 (369)
T ss_pred EEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEcccCcchhhccCCCC-CCCCCChhHHHHHHHHHhccccccc---eeeecCCC-ccccHHHHHHhhhcC
Q psy2382 245 SINPNKIIPIWLNQQLSIFDFLHAKTS-SCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPG-ALEIPLALKNIIQIK 319 (527)
Q Consensus 245 ~~~~~~~~lvRvHsec~tgDvfgs~~c-dc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~~ 319 (527)
++.+++||||||||+|+|||+|||++| ||+ |||+.||++|++ +|+| |+.+++++ ++.+++.++..++ .
T Consensus 242 ~~~~~~~vlVRvHSecltgDv~gS~~c~d~g----~qL~~Al~~I~~--eG~GvlvYLr~~~~~~gl~~kl~a~~~~~-~ 314 (369)
T PRK12485 242 DIRREQPTLVRVHVIDPLRDLVGAEYAGPAN----WTLWAALQKVAE--EGHGVVVVLANHESSQALLERIPQLTQPP-R 314 (369)
T ss_pred CCCCCCCceEEEecccchhhhhcCCCCCccH----HHHHHHHHHHHH--hCCEEEEEecCCCchhhHHHHHHHHHhHh-h
Confidence 999889999999999999999999976 999 999999999999 9989 66645544 7888888887653 2
Q ss_pred CccEEEEeeceeeCC-CchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhh
Q psy2382 320 KFNVLIAIGVIIRGE-TYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVN 382 (527)
Q Consensus 320 ~~da~i~lG~vi~g~-t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~ 382 (527)
.||. .+.+ -+.|...|+++. .||.+++|. ||| .+.++++..|+++-
T Consensus 315 ~~~~-------~d~r~~r~ygigAqILr~LGV~kirLL-nNP---------~K~~~L~~~GIeV~ 362 (369)
T PRK12485 315 QYQR-------SQSRIYSEVGTGAQILQDLGVGKLRHL-GPP---------LKYAGLTGYDLEVV 362 (369)
T ss_pred CCCc-------ccchhhhhhhHHHHHHHHcCCCEEEEC-CCc---------hhhhhhhhCCcEEE
Confidence 3552 2222 225777777774 699999999 779 58899999888865
No 3
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=3.7e-97 Score=783.55 Aligned_cols=361 Identities=34% Similarity=0.566 Sum_probs=345.1
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCcccc--ccCCC
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK--KNNSS 83 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~--~~~~~ 83 (527)
+++|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|++|++|++++|++|+||+|+. .|.+.
T Consensus 35 ~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~ 114 (450)
T PLN02831 35 FSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEK 114 (450)
T ss_pred cCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhcCCCcccccccCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987 47778
Q ss_pred CCCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcE
Q psy2382 84 FGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSA 163 (527)
Q Consensus 84 ~~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paa 163 (527)
++++||||||+++|++|||||.|||.|||+||+|+++|+||++|||||||++++|||++|+|||||||||||||||.|++
T Consensus 115 ~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paa 194 (450)
T PLN02831 115 MATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVG 194 (450)
T ss_pred cCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCceE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCC-CCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEEEE
Q psy2382 164 VICEILND-DGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLI 242 (527)
Q Consensus 164 vi~ei~~~-~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv 242 (527)
|||||+++ ||+|++.+++.+||++|+||+++++||++||..++++|+++++.++||.||+|++++|++..++.||+||+
T Consensus 195 vi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv 274 (450)
T PLN02831 195 VLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFV 274 (450)
T ss_pred EEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhccccccccceeeeecCCCCEEEEEEEeCCCCeEEEEEE
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eee-ecCCC-ccccHHHHHHhhh
Q psy2382 243 YGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILH-ISVPG-ALEIPLALKNIIQ 317 (527)
Q Consensus 243 ~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~-~~vpG-~le~p~~a~~l~~ 317 (527)
+|++.+++||||||||+|+|||+|||.+|||+ |||+.||++|++ +|.| |+. |+++| ++.+++.+|.+|+
T Consensus 275 ~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg----~qL~~Al~~I~~--~G~GVlvYLr~qegrgigl~~Kl~ay~lq~ 348 (450)
T PLN02831 275 KGDIGDGQDVLVRVHSECLTGDIFGSARCDCG----NQLALAMQLIEK--AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD 348 (450)
T ss_pred eCCcCCCCCceEEEeccCCHHHHhcCCCCCCc----chHHHHHHHHHH--cCCEEEEEEcCCCcccchHHHHHHHHhccc
Confidence 99998888999999999999999999999999 999999999999 9989 777 77788 8999999999987
Q ss_pred c--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhhc
Q psy2382 318 I--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 318 ~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
+ +++||+..||+.. +.+.|...++.+. .||.++.|.|||| .+..+++..|+.+-+
T Consensus 349 ~g~dt~eAn~~lg~~~--D~RdygigAqIL~dLGI~~irLLTNNp---------~K~~~L~~~GieVve 406 (450)
T PLN02831 349 EGRDTVEANEELGLPV--DSREYGIGAQILRDLGVRTMRLMTNNP---------AKYTGLKGYGLAVVG 406 (450)
T ss_pred ccCcchhhhhhccCcc--cceehHHHHHHHHHcCCCEEEECCCCH---------HHHHHHhhCCCEEEE
Confidence 6 4788889999955 7889998888885 6999999999999 688999999999764
No 4
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=8.4e-97 Score=775.68 Aligned_cols=361 Identities=34% Similarity=0.586 Sum_probs=346.8
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCC
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFG 85 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~ 85 (527)
++.|++||++||+|+||||+||++||||||||+|||.+|++.|+||++|++|++|++|++++|++|+||+|+..|+++++
T Consensus 4 ~~~v~~ai~~lr~G~~Vvl~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~~~~~~~ 83 (402)
T PRK09311 4 FDSIEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAHNQDSHG 83 (402)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCcccccCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEEE
Q psy2382 86 TNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVI 165 (527)
Q Consensus 86 ~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paavi 165 (527)
|+||||||+++|++|||||.|||.|||+||+|+++|+||++|||||||++++|||+.|+|||||||||||||||.|++||
T Consensus 84 t~ftvsvd~~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Paavi 163 (402)
T PRK09311 84 TAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVI 163 (402)
T ss_pred CceEEEEEccCCcccccchhHHHHHHHHHhCccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEEEEecc
Q psy2382 166 CEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGS 245 (527)
Q Consensus 166 ~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~ 245 (527)
|||+++||+|++.+++++||++|+||+++++||++||...|++|+++++.+|||.||+|++++|++..++.||+||++|+
T Consensus 164 ~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv~Gd 243 (402)
T PRK09311 164 CEIVNEDGTMARVPELRVFADEHDLALITIADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALVKGD 243 (402)
T ss_pred EEEecCCCcccchHHHHHHHHHcCCeEEEeechHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eee-ecCCC-ccccHHHHHHhhhc--
Q psy2382 246 INPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILH-ISVPG-ALEIPLALKNIIQI-- 318 (527)
Q Consensus 246 ~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~-~~vpG-~le~p~~a~~l~~~-- 318 (527)
+.+++||||||||+|+|||+|||++|||+ |||+.||++|++ +|.| |+. ++++| ++..++.+|.+|++
T Consensus 244 ~~~~~~vlVRVHs~c~tgDvfgs~~cdc~----~qL~~Al~~I~~--eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~ 317 (402)
T PRK09311 244 IGDGEDVLVRVHSECLTGDVFGSRRCDCG----PQLDAALAQIAE--EGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGY 317 (402)
T ss_pred CCCCCceeEEEeccCCHHHHhcCCCCCCc----chHHHHHHHHHH--cCCEEEEEEecCCcccchHHHHHHHHhhhhcCC
Confidence 99889999999999999999999999999 999999999999 8989 777 77788 88899999999886
Q ss_pred CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhhc
Q psy2382 319 KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 319 ~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
+++||+..+|+.. +.+.|...++.+. .|+.++.|.|||| .+..+++..|+.+-+
T Consensus 318 dt~~an~~lg~~~--D~Rdyg~gaqIL~~LGv~~irLLTnnp---------~K~~~L~~~GieV~~ 372 (402)
T PRK09311 318 DTVDANLKLGFPA--DARDYGIGAQILVDLGVRSMRLLTNNP---------RKIAGLQGYGLHVTE 372 (402)
T ss_pred ChhhhhhhcCCCc--cceehhHHHHHHHHcCCCEEEECCCCH---------HHHHHHhhCCCEEEE
Confidence 4788888999865 6889998888885 6999999999999 688999999999764
No 5
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=8.8e-95 Score=752.76 Aligned_cols=345 Identities=24% Similarity=0.373 Sum_probs=324.7
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCCCcee
Q psy2382 10 KEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNFT 89 (527)
Q Consensus 10 ~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~~~f~ 89 (527)
++||++||+|+||||+|+ +||||||||+||+++||+.||||++|++|++|++|++++|++|+||+|+..+ .+|+||
T Consensus 2 ~~ai~al~~G~~viv~D~-~REnEgdlv~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~~~---~~~aft 77 (387)
T PRK09318 2 EELREAFLEGKPVILIDR-NRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSNG---GETNFF 77 (387)
T ss_pred HHHHHHHHCCCeEEEEeC-CCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccCCC---CCCCEE
Confidence 789999999999999997 8999999999999999999999999999999999999999999999998432 358999
Q ss_pred EeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEEEEEEe
Q psy2382 90 VSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEIL 169 (527)
Q Consensus 90 vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paavi~ei~ 169 (527)
||||+++ +|||||.|||.|||+||+ .++|.||++|||||||.+. ||++|+||||||||||||||+.|++|||||+
T Consensus 78 vsvd~~~--~TGISa~DRa~Tir~la~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vicei~ 152 (387)
T PRK09318 78 IPVDYGT--GTGISASERALTCRKLAE-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIVEIL 152 (387)
T ss_pred EEEcCCC--CCCcCHHHHHHHHHHHHh-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEEEEe
Confidence 9999864 499999999999999999 6789999999999999875 7999999999999999999999999999999
Q ss_pred CCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCC
Q psy2382 170 NDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPN 249 (527)
Q Consensus 170 ~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~ 249 (527)
++||+|++++++++||++|+||+++++||++||.++|++|++++++++||.||+|++++|++..++.||+||++|++.
T Consensus 153 ~~dG~m~~~~~~~~fA~~h~l~~i~i~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~~~-- 230 (387)
T PRK09318 153 DEKGDSHDLDYVLKLAEKFSLPVLEIDDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPLG-- 230 (387)
T ss_pred cCCCccccHHHHHHHHHHCCCcEEEHHHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccE
Q psy2382 250 KIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNV 323 (527)
Q Consensus 250 ~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da 323 (527)
+||||||||+|+|||+|||.+|||+ +||+.||++|++ +| | |+.|+++| ++..++.+|.+|++ +++||
T Consensus 231 ~~vLVRVHSec~tgDvfgs~~CdCg----~qL~~Al~~Ia~--eG-GvlvYLrqegrgigl~~Kl~ay~lq~~g~dt~eA 303 (387)
T PRK09318 231 EVPLVRIHSECVTGDTLSSLRCDCG----SQLANFLRMISK--EG-GILIYLRQEGRGIGLSNKIKAYELQDKGLDTVEA 303 (387)
T ss_pred CCceEEEeecccHHHHhcCCCCCCc----chHHHHHHHHHH--cC-CEEEEECCCCcchhHHHHHHHHhhhhcCCCchhh
Confidence 4899999999999999999999999 999999999999 88 9 77788888 88999999999876 47888
Q ss_pred EEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhhc
Q psy2382 324 LIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 324 ~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
+..||+.. +.+.|...++.+. .|+.++.|.|||| .+..+++..|+++.+
T Consensus 304 n~~lg~~~--D~RdygigAqIL~dLGV~~irLLTNnp---------~K~~~L~~~GieV~~ 353 (387)
T PRK09318 304 NRALGFKE--DERDYAAAFQILKALGIEKVRLLTNNP---------RKTKALEKYGIEVVE 353 (387)
T ss_pred hhhcCCCc--cceeeeHHHHHHHHcCCCEEEECCCCH---------HHHHHHHhCCCEEEE
Confidence 89999965 6899998888885 6999999999999 688999999999875
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=2.2e-94 Score=748.73 Aligned_cols=353 Identities=46% Similarity=0.727 Sum_probs=336.6
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
.+.+|++||++||+|+||||+|+++||||||||+|||++|++.++||++|++|++|++|++++|++|+||+|+..|++++
T Consensus 2 ~~~~i~~Ai~~lr~G~~Viv~D~~~re~egdlv~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~~~~~~ 81 (367)
T PRK14019 2 TLASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYRNGTQY 81 (367)
T ss_pred CCccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCcccccCCCcC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+++||+|||+++|++|||||.||+.||+.|++|+++|+||.+|||||||.+++||+++|+|||||||||||+|||.|++|
T Consensus 82 ~~~ftvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Paav 161 (367)
T PRK14019 82 GTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAV 161 (367)
T ss_pred CCceEEEEEcCCCccceeecHHHHHHHHHHhcCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEEEEec
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYG 244 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G 244 (527)
+|||+++||+|++.+++.+||++|+||+|+++||++||.+.+++|++++++++||+||+|++++|++..++.||+||++|
T Consensus 162 i~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv~G 241 (367)
T PRK14019 162 ICEIMKDDGTMARLPDLEEFAKEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKG 241 (367)
T ss_pred EEEEecCCCcccchHHHHHHHHHcCCcEEEHHHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eeeecCCC-ccccHHHHHHhhhcCC
Q psy2382 245 SINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPG-ALEIPLALKNIIQIKK 320 (527)
Q Consensus 245 ~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~~~ 320 (527)
++++++||||||||+|+|||+|||.+|||+ +||+.||++|++ +|.| |+.|+++| ++.+++.+ +
T Consensus 242 d~~~~~~vlVRvHS~c~tgDvfgs~~cdcg----~qL~~al~~I~~--~G~GvlvyL~qegrgigl~~k~~~-------~ 308 (367)
T PRK14019 242 TICPDEETLVRVHEPLSVLDLLEVGQPTHS----WSLDAAMAAIAE--AGSGVVVLLNCGDDGEHLLDRFRA-------E 308 (367)
T ss_pred CcCCCCceeEEEeeccchHhHhcCCCCCcH----HHHHHHHHHHHh--cCCEEEEEEccCCchhhHHHhhhh-------h
Confidence 999889999999999999999999999999 999999999999 9989 77888887 77777764 3
Q ss_pred ccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhh
Q psy2382 321 FNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVN 382 (527)
Q Consensus 321 ~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~ 382 (527)
++++..||+.. +.+.|.+.++++. .|+.+++|.| || .+..+++..|+++-
T Consensus 309 ~~an~~lg~~~--d~R~y~igaqIL~~Lgv~~irLlT-np---------~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 309 EAAAALKRRPV--DYRTYGIGAQILRDLGVGKMRLLS-SP---------RKFPSMSGFGLEVT 359 (367)
T ss_pred hhhhhhcCCCc--ccceehHHHHHHHHcCCCeEEECC-Cc---------HHHHhhhhCCcEEE
Confidence 56899999865 6888998888885 7999999999 79 58899999998865
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=3.2e-94 Score=734.24 Aligned_cols=328 Identities=38% Similarity=0.567 Sum_probs=308.5
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
++++|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|++++|++|+||+|+..|++++
T Consensus 2 ~~~~i~~ai~~l~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~n~~~~ 81 (339)
T PRK09314 2 PIKRVEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSKNTSNH 81 (339)
T ss_pred CcccHHHHHHHHHCCCeEEEEeCCCCCCcccEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCcccccCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+||||||++. ++|||||.|||+|||+||+|+++|.||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 82 ~taFtvsVda~~-~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~v 160 (339)
T PRK09314 82 ETAFTVSIDAKE-ATTGISAFERDMTIKLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAV 160 (339)
T ss_pred CCCeEEEEecCC-CCCCCCHHHHHHHHHHHhCCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCceEE
Confidence 999999999984 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEEEEec
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYG 244 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G 244 (527)
||||+++||+|++.+++++||++|+||+++++||++||..+|++|+++++++|||.||+|++++|++. ++.||+||++|
T Consensus 161 icEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv~G 239 (339)
T PRK09314 161 ICEIMKEDGTMARRDDLEDFAKKHNLKMIYVSDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFKFG 239 (339)
T ss_pred EEEEecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred cCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eeeecCCCccccHHHHHHhhhcCCc
Q psy2382 245 SINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPGALEIPLALKNIIQIKKF 321 (527)
Q Consensus 245 ~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG~le~p~~a~~l~~~~~~ 321 (527)
+++. ||||||||+|+|||+|+| ||. +||+.||++|++ +| | |+.|++++
T Consensus 240 ~~~~--~vlVRVHSec~tgd~l~~---~~~----~qL~~Al~~I~~--eG-GvlvYLrqegr~----------------- 290 (339)
T PRK09314 240 EIKL--TPNVKFHKIGSDFELLTS---DKF----SELLKAIEYLKK--NG-GVLIFLNTESKE----------------- 290 (339)
T ss_pred CCCC--CccEEEeccCChHHhhCC---CcH----HHHHHHHHHHHH--cC-CEEEEEcCCCCC-----------------
Confidence 9963 899999999999999985 455 899999999999 88 9 77776653
Q ss_pred cEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCC-CceeeecccCcHHHHHHhhhhhhh
Q psy2382 322 NVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNI-PIINAILTTETIEQANSRILTKVN 382 (527)
Q Consensus 322 da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~-Pv~~gvlt~~~~~qa~~r~g~~~~ 382 (527)
++ +.+.|...++++. .||.+++|.||| | .+..+++..|+++-
T Consensus 291 -an---------~~RdygigaqIL~dLGi~~irLlTnn~p---------~K~~~L~~~GieV~ 334 (339)
T PRK09314 291 -NN---------QVKDYGIGAQILKYLGIKDIKLLSSSED---------KEYVGLSGFGLNIV 334 (339)
T ss_pred -cc---------cccchhHHHHHHHHCCCCEEEECCCCCh---------hhhhhHhhCCcEEE
Confidence 11 3778998888885 699999999999 8 57788888887754
No 8
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.5e-75 Score=545.37 Aligned_cols=201 Identities=54% Similarity=0.859 Sum_probs=197.6
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
.+.+|++||++||+|+||+|+||++||||||||+||+.+||+.|+||++|++|+||++|++++|++||||+|++.|++.+
T Consensus 2 ~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~n~~~~ 81 (203)
T COG0108 2 MFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDNNTDAH 81 (203)
T ss_pred chhhHHHHHHHHHCCCeEEEEcCCCCCCcccEEEEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCccccccCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+|||||||++ ++|||||.||+.|||.|+++++.|+||++|||||||+|++|||++|+|||||||||||||||.|++|
T Consensus 82 ~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~V 160 (203)
T COG0108 82 GTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGV 160 (203)
T ss_pred CCceEEEEeccc-CcCCcCHHHHHHHHHHHhcCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEE
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhch
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYE 206 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e 206 (527)
||||+++||+|++.+++++||++|+||+++++||++||.+++
T Consensus 161 icEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e 202 (203)
T COG0108 161 ICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHE 202 (203)
T ss_pred EEEEeCCCccccChHHHHHHHHHcCCcEEEHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999998775
No 9
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=1.4e-73 Score=593.21 Aligned_cols=314 Identities=13% Similarity=0.166 Sum_probs=285.4
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
.+.+|++||++||+|+||||+||++|| |||+|||.+||+.++||++|++|++|++||+++|++||||+|.
T Consensus 16 ~~~~ie~Ai~~lr~G~~Viv~Dde~Re---dLV~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~------- 85 (375)
T PRK08815 16 AAIRCERAAAELRAGRPVLLTDAQGQR---RAVIALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ------- 85 (375)
T ss_pred hhhHHHHHHHHHHCCCeEEEEcCCCCe---EEEEEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-------
Confidence 367899999999999999999999986 9999999999999999999999999999999999999999992
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
.|+++|+ || +.||+.||+.+++| .+.||++|||+|| ||||||||||||.||||
T Consensus 86 --~~t~~is-------~i-d~dRa~Ti~~~~~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Paav 138 (375)
T PRK08815 86 --GARVALP-------DV-DYDRLAALAYLRDG--RVPAPWAPGDALD---------------AGAVEIARLALLLPAMV 138 (375)
T ss_pred --CcEEeEe-------cc-hHHHHHHHHHHhcC--CccccCCCCCCcc---------------HHHHHHHHHcCCCceEE
Confidence 2343332 34 47999999999999 5899999999996 99999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHH-hchhhhhhhccccccCCc-ccEEEEEEeeCCCCcEEEEEE
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRY-KYENIIKRKAEYNINTLY-GNFKIIVYIDKINNDIHLTLI 242 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~-~~e~~v~~~~~~~lpt~~-G~f~~~~y~~~~~~~eh~alv 242 (527)
||||+++|+ + +|| +|++++|+||++||. ++|.+|++++++++||.+ |+|++++|++..++.||+||+
T Consensus 139 i~Ei~~~~~--~------~fa---~L~i~tI~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~ALv 207 (375)
T PRK08815 139 AVPLPVHDE--A------AFA---GCQALALADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVAIV 207 (375)
T ss_pred EEEEccCCC--h------hhC---CCcEeeHHHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEEEE
Confidence 999999743 2 676 999999999999998 889999999999999995 999999999999999999999
Q ss_pred eccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eeeecCCC-ccccHHHHHHhhhc
Q psy2382 243 YGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPG-ALEIPLALKNIIQI 318 (527)
Q Consensus 243 ~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~ 318 (527)
+|++++++||||||||+|+|||+|||++|||+ +||+.||++|++ +|.| |+.++++| ++..++.+|.+|++
T Consensus 208 ~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc~----~qL~~Al~~I~~--~G~GVlvyL~qegrg~gl~~kl~ay~lq~~ 281 (375)
T PRK08815 208 VGQPDLSSAVPVRVHSSCLTGDLFGSLKCDCG----DQLRHGLAKLKE--LGGGVLLYLDQEGRGNGIAAKMRAYGYQHA 281 (375)
T ss_pred eCCCCCCCCceEEEeccCcHHHHhcCCCCCCH----HHHHHHHHHHHh--hCCEEEEEEcCCCccchHHHHHHHHhhhhc
Confidence 99999889999999999999999999999999 999999999999 8989 77777788 78889999999876
Q ss_pred --CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhhc
Q psy2382 319 --KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 319 --~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
+++|++..+|+.. +.+.|...++.+. .|+.+++|.||+| .+..+++..|+++-+
T Consensus 282 g~dt~~a~~~lg~~~--D~RdygigAQIL~dLGV~kirLLTnnp---------~K~~~L~g~gieVv~ 338 (375)
T PRK08815 282 GLDTIDADAQLGFGP--DERRYGSAVAMLRGLGITRVRLLTNNP---------TKAERLRAAGIEVED 338 (375)
T ss_pred cCCchhhhhhcCCCc--cceeeeHHHHHHHHcCCCeEEECCCCH---------HHHHHHHhCCCEEEE
Confidence 4778888999865 6899998777775 6999999999999 688999999999764
No 10
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-71 Score=535.06 Aligned_cols=202 Identities=47% Similarity=0.805 Sum_probs=198.5
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
++++|++||++||+|+||||+||++||||||||+|||++|+|.|+||++|++|++|++|++++|++||||+|+..|++.+
T Consensus 13 ~~~~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~n~~~~ 92 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVNNNSAN 92 (218)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+||||||+++|++|||||.|||+|||+||+|.++|+||++|||||||++++|||++|+||||||||||+|||+.|++|
T Consensus 93 ~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v 172 (218)
T PRK00910 93 QTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGV 172 (218)
T ss_pred CCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhch
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYE 206 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e 206 (527)
||||+++||+|++++++++||++|+||+++++||++||.+++
T Consensus 173 icEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yr~~~~ 214 (218)
T PRK00910 173 LCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFD 214 (218)
T ss_pred EEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998776
No 11
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=9.2e-71 Score=528.13 Aligned_cols=201 Identities=47% Similarity=0.811 Sum_probs=196.9
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
.+++|++||++|++|+||||+||++||||||||+|||.+|++.|+||++|++|++|++|++++|++||||+|++.|++.+
T Consensus 12 ~~~~i~~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~n~~~~ 91 (214)
T PRK01792 12 AEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQHNTSVN 91 (214)
T ss_pred ccccHHHHHHHHHCCCeEEEEeCCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCcccccCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+|||||||++|++|||||.|||+|||+|++|.++|+||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 92 ~taFtvsVda~~g~~TGISA~DRa~Tir~la~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~v 171 (214)
T PRK01792 92 KTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGV 171 (214)
T ss_pred CCCEEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhc
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKY 205 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~ 205 (527)
||||+++||+|++++++++||++|+||+++++||++||.++
T Consensus 172 icEil~~dG~ma~~~~~~~fA~~~~l~~isi~dli~yr~~~ 212 (214)
T PRK01792 172 ICEITNDDGTMARTPEIVEFAKKFGYAVVTIEDLVEYRLKY 212 (214)
T ss_pred EEEEecCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999754
No 12
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.1e-69 Score=521.69 Aligned_cols=199 Identities=40% Similarity=0.657 Sum_probs=195.8
Q ss_pred ccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCCC
Q psy2382 7 SSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGT 86 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~~ 86 (527)
.+|++||++|++|+||||+||++||||||||++||++|+|.|+||++|++|++|++|++++|++||||+|++.|++++++
T Consensus 19 ~~i~~ai~al~~Gk~Viv~Dde~REnEgDlv~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~n~~~~~t 98 (230)
T PRK00014 19 TRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDSNRSRYST 98 (230)
T ss_pred hhHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCcccccCCCCCCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEEEE
Q psy2382 87 NFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVIC 166 (527)
Q Consensus 87 ~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paavi~ 166 (527)
+||||||+++|++|||||.||++|||.|++|+++|+||++|||||||++++|||++|+||||||||||+|||+.|++|||
T Consensus 99 ~ftvSVDa~~gttTGISA~DRa~Tir~La~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vic 178 (230)
T PRK00014 99 AFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLC 178 (230)
T ss_pred CeEEEEEcCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhc
Q psy2382 167 EILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKY 205 (527)
Q Consensus 167 ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~ 205 (527)
||+++||+|++.+++++||++|+||+++++||++|+.+.
T Consensus 179 Eil~~dG~ma~~~~l~~fA~~~~l~iisi~dli~y~~~~ 217 (230)
T PRK00014 179 ELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQAR 217 (230)
T ss_pred EEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHHHHHHH
Confidence 999999999999999999999999999999999999754
No 13
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=4.3e-69 Score=513.79 Aligned_cols=197 Identities=50% Similarity=0.832 Sum_probs=192.6
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCC
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFG 85 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~ 85 (527)
+++|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|++|++|++++|++|+||+|++.|+++++
T Consensus 2 ~~~ie~ai~al~~G~~Viv~Dd~~REnEgdlv~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~n~~~~~ 81 (199)
T TIGR00506 2 FERVEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDINTSASG 81 (199)
T ss_pred cchHHHHHHHHHCCCeEEEEeCCCCCccEeEEEEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccccCCcCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeEeccCC-CCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 86 TNFTVSIEAANG-VTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 86 ~~f~vsvd~~~g-~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
|+|++|||+.++ ++|||||.|||+|||.|++|.++|+||++|||||||++++|||++|+||||||||||||||+.|++|
T Consensus 82 t~~t~sV~~~~~~~~TGISa~DRa~Tir~~a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~v 161 (199)
T TIGR00506 82 TASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGV 161 (199)
T ss_pred CceEEEEEeCCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEE
Confidence 999889988777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHH
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYR 202 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~ 202 (527)
||||+++||+|++.+++++||++|+||+++++||++||
T Consensus 162 icEil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr 199 (199)
T TIGR00506 162 ICEMMNDDGTMARKPELMEYAKKHNLKLISIEDLIEYR 199 (199)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 14
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=5.4e-69 Score=512.29 Aligned_cols=194 Identities=53% Similarity=0.875 Sum_probs=181.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCCCce
Q psy2382 9 TKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFGTNF 88 (527)
Q Consensus 9 v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~~~f 88 (527)
|++||++|++|+||||+||++||||||||++||.+|++.|+||++|++|++|++|++++|++||||+|++.|+++++++|
T Consensus 1 ie~ai~al~~G~~Viv~D~~~rE~egdlv~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~~~~~~~~~f 80 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVFAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPDNTDPHGTAF 80 (194)
T ss_dssp HHHHHHHHHTTS-EEEECSSTTT-EEEEEEEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSSCCTTTS--B
T ss_pred CHHHHHHHHCCCeEEEEeCCCCCcceeEEeEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCcCCCCCCCCe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEEEEEE
Q psy2382 89 TVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEI 168 (527)
Q Consensus 89 ~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paavi~ei 168 (527)
+|||||+.|++|||||.|||+||++||+|+++|+||++|||||||++++|||++|+||||||||||+|||+.|++|||||
T Consensus 81 tvsVD~~~g~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ei 160 (194)
T PF00926_consen 81 TVSVDAAKGTTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICEI 160 (194)
T ss_dssp BCEEEESSS-SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEEB
T ss_pred eEeeecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHH
Q psy2382 169 LNDDGTMARLPDLIKFSKLHNIKIGTISNLICYR 202 (527)
Q Consensus 169 ~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~ 202 (527)
+++||+|++.+++++||++|+||+++++||++||
T Consensus 161 l~~dG~~~~~~~~~~fA~~~~l~~vsi~dli~yr 194 (194)
T PF00926_consen 161 LDDDGDMARRDELEEFAKKHGLPIVSIEDLIEYR 194 (194)
T ss_dssp BETTSSBHCHHHHHHHHHHTT-EEEEHHHHHHHH
T ss_pred eCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHhhC
Confidence 9999999999999999999999999999999997
No 15
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-65 Score=497.11 Aligned_cols=202 Identities=48% Similarity=0.803 Sum_probs=198.2
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
.+.+|++||++||+|+||||+||++||||+|||+|||.+|++.++||++|++|++|+++++++|++|+||+|++.|++++
T Consensus 12 ~~~~ve~Ai~~Lr~G~pViv~D~~~re~Egdlv~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~~~~~~ 91 (217)
T PRK03353 12 PFERVEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVENNTSQY 91 (217)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccccCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+++||||||+++|++|||||.||+.|||.|++|.++|.||++|||||||++++||+++|+|||||||||||||||.|++|
T Consensus 92 ~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~av 171 (217)
T PRK03353 92 GTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGV 171 (217)
T ss_pred CCceEEEEECCCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhch
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYE 206 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e 206 (527)
+|||+++||+|++.+++.+||++|+||+++++||++||..+|
T Consensus 172 i~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~dli~~r~~~~ 213 (217)
T PRK03353 172 LCELTNDDGTMARAPECIAFAKQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEeecCCCCcccHHHHHHHHHHcCCcEEEHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998876
No 16
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=7.4e-64 Score=483.19 Aligned_cols=191 Identities=28% Similarity=0.381 Sum_probs=180.0
Q ss_pred cHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccc--------
Q psy2382 8 STKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKK-------- 79 (527)
Q Consensus 8 ~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~-------- 79 (527)
+|++||++||+|+||||+||++||||||||+||+++|++.|+||++|++|++|++|++++|++||||+|++.
T Consensus 2 ~ie~ai~al~~G~~Viv~Dde~REnEgDlv~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~ 81 (219)
T PRK05773 2 DFEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYR 81 (219)
T ss_pred CHHHHHHHHHCCCeEEEEECCCCCccccEEEEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---cCCCCC--CceeEeEeccCCCCCCCChhhhHHHHHHHhcC--------CC----CCCCccCCCCCcccccccCCccc
Q psy2382 80 ---NNSSFG--TNFTVSIEAANGVTTGISASDRAHTIKVASSK--------KA----KPSDIVQPGHIFPLQAKKGGVLI 142 (527)
Q Consensus 80 ---~~~~~~--~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~--------~~----~~~d~~~PGhv~pl~a~~ggv~~ 142 (527)
|+++|+ ++||||||| .|++|||||.|||+|||+||++ +. .|+||++|||||||+++ ||++
T Consensus 82 ~~~~~~~~~~~taFtvsVd~-~~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~ 158 (219)
T PRK05773 82 KLVKKPSYGDEPAFSLWVNH-VKTKTGISDYDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRE 158 (219)
T ss_pred cccccCCCCCCceEEEEEcC-CCCCCCcCHHHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--cccc
Confidence 346777 799999998 4999999999999999999983 22 27999999999999998 7999
Q ss_pred cCChhHHHHHHHHHhCCCCcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHH
Q psy2382 143 RGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYR 202 (527)
Q Consensus 143 r~ghtEaav~L~rlAgl~Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~ 202 (527)
|+||||||||||||||+.|++|||||+|++ .|++++++++||++|+||+++++||++|.
T Consensus 159 R~GHTEasvdLa~lAGl~P~~vicEil~~~-~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 159 RRGHTELSIALAQAAGLEPSAVIAEMLDEK-LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred CCChhHHHHHHHHHcCCCccEEEEEEeCCC-CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 999999999999999999999999999975 59999999999999999999999999875
No 17
>KOG1284|consensus
Probab=100.00 E-value=2.5e-56 Score=444.58 Aligned_cols=286 Identities=29% Similarity=0.455 Sum_probs=277.2
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCcccc--ccCCC
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTK--KNNSS 83 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~--~~~~~ 83 (527)
+.+|+.+|..+|.|++|+|+|+++|+||++|++++...+++.++|+.+|++|.+|+.|..+...+|-||+|+. .+.+.
T Consensus 63 ~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~ 142 (357)
T KOG1284|consen 63 FCSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDET 142 (357)
T ss_pred eechhhhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999998 56788
Q ss_pred CCCceeEeEeccCCCCCCCChhhhHHHHHHHhc-CCCCCCCccCCCCCcccccc-cCCccccCChhHHHHHHHHHhCCCC
Q psy2382 84 FGTNFTVSIEAANGVTTGISASDRAHTIKVASS-KKAKPSDIVQPGHIFPLQAK-KGGVLIRGGHTEAGCDLTKLAGLTP 161 (527)
Q Consensus 84 ~~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~-~~~~~~d~~~PGhv~pl~a~-~ggv~~r~ghtEaav~L~rlAgl~P 161 (527)
+.++||++||+++|++||||+.||+.|++.|++ ..+.|+||.+|||++|++.+ +|||++|.||||++|+||.++|+.|
T Consensus 143 ~~~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~p 222 (357)
T KOG1284|consen 143 YETAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYP 222 (357)
T ss_pred cccceeEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCc
Confidence 899999999999999999999999999999999 57789999999999999999 6999999999999999999999999
Q ss_pred cEEEEEEeCC-CCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEE
Q psy2382 162 SAVICEILND-DGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLT 240 (527)
Q Consensus 162 aavi~ei~~~-~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~a 240 (527)
.+++||++++ ||.|++++++..||.+|++|+++++|+++|+.++...|+++..++.||.+|.|..++|++..+++||++
T Consensus 223 l~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~ 302 (357)
T KOG1284|consen 223 LGVLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIA 302 (357)
T ss_pred hhhhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhccccccc
Confidence 9999999997 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccce
Q psy2382 241 LIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKNI 297 (527)
Q Consensus 241 lv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G~ 297 (527)
.+.|.+-.+..+++|+|++|+++|+||+.+|+|+ .|+.-+|+.|.. .|.|.
T Consensus 303 ~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t~~----sq~~~~~r~~e~--~g~~~ 353 (357)
T KOG1284|consen 303 SVEGEVYLGTKIEVRGHLECLPDDIFGNRKRTGG----SQLNYFMRTIEA--AGRGV 353 (357)
T ss_pred ccceEEeechhhhheeehhcccchhcCCcCCCCc----cHHHHHHHHHHh--hccee
Confidence 9999998888999999999999999999999999 999999999998 88773
No 18
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=99.97 E-value=1.1e-32 Score=261.35 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=145.5
Q ss_pred hhhhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHH
Q psy2382 208 IIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKL 287 (527)
Q Consensus 208 ~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~ 287 (527)
.+++++++++||++|+|++++|++..++++|+|+|+|++.+ +||||||||||+|||+|||.+|||| +||+.+|++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg----~ql~~al~~ 76 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCG----EQLEAALRR 76 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcH----HHHHHHHHH
Confidence 47789999999999999999999999999999999999976 8999999999999999999999999 999999999
Q ss_pred Hhccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCc
Q psy2382 288 IKNGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPI 360 (527)
Q Consensus 288 i~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv 360 (527)
|++ +|.| |++||++| ++.+++.||.+|+. ++++|+..+|+.. |.+.|.+-|+++. .||.++.|.||+|
T Consensus 77 i~~--~g~GVvvYLrqEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~--D~R~ygigAqIL~dLGI~~irLLtnnp- 151 (193)
T COG0807 77 IAE--EGSGVVVYLRQEGRGIGLLNKIRAYALQDKGADTVEANLALGFPA--DERDYGIGAQILKDLGIKKIRLLTNNP- 151 (193)
T ss_pred Hhh--cCceEEEEeecCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCc--hHHHHHHHHHHHHHcCCcEEEEecCCh-
Confidence 998 8888 88899988 99999999999987 4899999999976 6888998888885 6999999999999
Q ss_pred eeeecccCcHHHHHHhhhhhhhc
Q psy2382 361 INAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 361 ~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
.+..+++..|+++-.
T Consensus 152 --------~K~~~l~~~Gi~vve 166 (193)
T COG0807 152 --------RKIYGLEGFGINVVE 166 (193)
T ss_pred --------HHHHHHHhCCceEEE
Confidence 688999999987654
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=99.96 E-value=3.1e-31 Score=250.07 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=120.1
Q ss_pred hhhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHH
Q psy2382 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLI 288 (527)
Q Consensus 209 v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i 288 (527)
|+++++.++||+||+|++++|++..++.+|+|||+|+|++++||||||||+|++||+|||.+|||+ |||+.||++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~----~~L~~Am~~I 76 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCG----WQLDKAMRRI 76 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHH----HHHHHHHHHH
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCc----HHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCce
Q psy2382 289 KNGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPII 361 (527)
Q Consensus 289 ~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~ 361 (527)
++ +|.| |+.++++| ++..++.++.+++. ++++++.++|.. .+.+.|...|+.+. .|+.++.|.||+|
T Consensus 77 ~~--~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~--~d~R~ygigaqIL~dLGV~~~rLLtnnp-- 150 (169)
T PF00925_consen 77 AE--EGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFP--EDLRDYGIGAQILRDLGVKKMRLLTNNP-- 150 (169)
T ss_dssp HH--HTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT----S----THHHHHHHHHTT--SEEEE-S-H--
T ss_pred HH--cCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCc--cccccHHHHHHHHHHcCCCEEEECCCCh--
Confidence 99 9999 67788888 89999999999865 367788888884 47889998888886 6999999999999
Q ss_pred eeecccCcHHHHHHhhhhhhhc
Q psy2382 362 NAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 362 ~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
.+..|++--|+++-+
T Consensus 151 -------~k~~~L~g~gleV~~ 165 (169)
T PF00925_consen 151 -------RKYVALEGFGLEVVE 165 (169)
T ss_dssp -------HHHHHHHHTT--EEE
T ss_pred -------hHHHHHhcCCCEEEE
Confidence 577899888887654
No 20
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.96 E-value=1.7e-28 Score=223.84 Aligned_cols=133 Identities=39% Similarity=0.640 Sum_probs=121.2
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCHHH
Q psy2382 388 TPRHRAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIE 465 (527)
Q Consensus 388 ~~r~~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~~~ 465 (527)
|+|+++|+.|+++||++...+.++++ +.+.+.. ..+++.|++|+++|++|+++|+..||++|++++ +|+++++++++
T Consensus 1 ~~r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l~~~~~~~l~~~~ 79 (137)
T PRK00202 1 AARRKAREAAVQALYQWELSGNDIAEIIEAQLLE-EQYDKADPAYFRSLVRGVVENQAELDELISPYLKDWTLERLDPVE 79 (137)
T ss_pred CchHHHHHHHHHHHHHHHccCCCHHHHHHHHHHh-cccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHhhHHH
Confidence 68999999999999999999988875 4555543 347788999999999999999999999999988 79999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhccccc
Q psy2382 466 YVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIRNI 521 (527)
Q Consensus 466 r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~~~ 521 (527)
++|||+|+|||+|++++|++++|||||++||+|+.+++++|||||||++.|+.+..
T Consensus 80 ~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~~~~~ 135 (137)
T PRK00202 80 RAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKELRPA 135 (137)
T ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHHhhcc
Confidence 99999999999998679999999999999999999999999999999999987654
No 21
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.95 E-value=1.1e-28 Score=223.73 Aligned_cols=126 Identities=29% Similarity=0.464 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHH----HHHHH---HHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCC
Q psy2382 391 HRAREFALQGIYQWLFNNMDVNL----IETYI---KEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELS 462 (527)
Q Consensus 391 ~~aRe~A~q~Ly~v~~~~~~~~~----l~~~~---~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~ 462 (527)
|++|+.|+|+||+++.++..... +...+ .....++..|++|+++|++|+++|+..||++|++++ +|+++|++
T Consensus 1 ~~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~~~~~~~~rl~ 80 (134)
T PF01029_consen 1 RKARELALQALYQVEFNDEEDEEEGQFLDEALEEELEESELSEEDRAFARELVYGVLRNKEELDALISKLLKNWPLERLP 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHHTSTSSTGGGSG
T ss_pred ChHHHHHHHHHHHHHccCCchhhhhhhHHHHHhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 57999999999999887776111 12222 123567899999999999999999999999999987 89999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHh
Q psy2382 463 SIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVAL 516 (527)
Q Consensus 463 ~~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R 516 (527)
+++++|||+|+|||+|++++|++++|||||++||+|+++++++|||||||++.|
T Consensus 81 ~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~R 134 (134)
T PF01029_consen 81 PVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIAR 134 (134)
T ss_dssp HHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhhC
Confidence 999999999999999988999999999999999999999999999999999986
No 22
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.95 E-value=4.4e-28 Score=223.24 Aligned_cols=137 Identities=36% Similarity=0.529 Sum_probs=116.6
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCCCH-HHH----HHHHHH-hcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcC-CCC
Q psy2382 386 NKTPRHRAREFALQGIYQWLFNNMDV-NLI----ETYIKE-ISNFYKVDKKYFYLILRGVINDINFLRYDLSLIID-RSI 458 (527)
Q Consensus 386 ~~~~r~~aRe~A~q~Ly~v~~~~~~~-~~l----~~~~~~-~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~-~~l 458 (527)
..++|+.+|+.|+|+||+|+.++... +.+ ...+.. ..+....+..|+.+|+.||.+|+..||.+|+++++ |++
T Consensus 6 ~~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~L~~w~~ 85 (151)
T COG0781 6 PKLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPHLKKWSL 85 (151)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 46899999999999999999976632 222 222211 11122278899999999999999999999998765 999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcccccc
Q psy2382 459 NELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIRNIK 522 (527)
Q Consensus 459 ~rl~~~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~~~e 522 (527)
+||++++|+|||+|+|||+|.+++|..++|||||+|||+|+.+++++||||||+++++..++.+
T Consensus 86 ~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~~~~~ 149 (151)
T COG0781 86 ERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKLRPKE 149 (151)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999998899999999999999999999999999999999999877654
No 23
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=99.95 E-value=2.4e-28 Score=221.59 Aligned_cols=113 Identities=29% Similarity=0.526 Sum_probs=98.3
Q ss_pred HHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCCC
Q psy2382 281 IMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 359 (527)
Q Consensus 281 L~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~P 359 (527)
|+.|++.+.+. +....+.+.+|||+||+|++++++.++++|||+|+|||||||+|+||||||+++++|||+++|++++|
T Consensus 26 l~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~~P 105 (141)
T PLN02404 26 LEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAVANSAASGVLSAGLNSGVP 105 (141)
T ss_pred HHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHHHHHHHHHHHHHHhccCCC
Confidence 55666666551 12234788999999999999999999899999999999999999999999999999999999999999
Q ss_pred ceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHH
Q psy2382 360 IINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGI 401 (527)
Q Consensus 360 v~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~L 401 (527)
|+|||||++|++||++|+|.+.|. +.++.|.-+|
T Consensus 106 V~~GVLt~~~~eQA~~Rag~~~~n--------kG~eaA~aal 139 (141)
T PLN02404 106 CIFGVLTCDDMEQALNRAGGKAGN--------KGAEAALTAV 139 (141)
T ss_pred EEEEEcCCCCHHHHHHHhCCcccC--------cHHHHHHHHH
Confidence 999999999999999999988862 5777776554
No 24
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.95 E-value=1.1e-27 Score=215.88 Aligned_cols=127 Identities=39% Similarity=0.693 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCHHHHH
Q psy2382 390 RHRAREFALQGIYQWLFNNMDVNLI-ETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYV 467 (527)
Q Consensus 390 r~~aRe~A~q~Ly~v~~~~~~~~~l-~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~~~r~ 467 (527)
|+.+|+.|+++||+++..+.+++++ ...+.. .++++.|++|++++++|+++|+..||++|++++ +|+++++++++++
T Consensus 1 ~~~~R~~a~~~l~~~~~~~~~~~~~l~~~~~~-~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~~~~~~~~l~~~~~~ 79 (129)
T TIGR01951 1 RRKARELALQALYQWELSGNDVEEIIEEFLEE-RELDEEDREYFLELVRGVLENQEEIDELISPHLKDWSLERLDPVDRA 79 (129)
T ss_pred ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHhhHHHHH
Confidence 4678999999999999988888764 444443 357889999999999999999999999999998 7999999999999
Q ss_pred HHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 468 VLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 468 ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
|||+|+|||+|++++|++++|||+|++||+|+.+++++|||||||++.|.
T Consensus 80 iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (129)
T TIGR01951 80 ILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAKE 129 (129)
T ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhhC
Confidence 99999999999867999999999999999999999999999999999873
No 25
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.95 E-value=2.4e-27 Score=214.11 Aligned_cols=128 Identities=32% Similarity=0.490 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCHHHHHH
Q psy2382 390 RHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYVV 468 (527)
Q Consensus 390 r~~aRe~A~q~Ly~v~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~~~r~I 468 (527)
|+.+|+.|+|+||+++..+.+.+++.+.......+++.|++|++++++|+++|+..||++|++++ +|+++++++++++|
T Consensus 1 r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l~~~~~~~l~~~~~~i 80 (130)
T cd00619 1 RRRARELAVQALYAWELAPEILAEVVSLLELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVERAI 80 (130)
T ss_pred ChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHccCCCHHHhhHHHHHH
Confidence 57889999999999999888877643332222345688999999999999999999999999976 58799999999999
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 469 LLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 469 LRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
||+|+|||+|++++|++++|||||++||+|+.+++++|||||||++.|+
T Consensus 81 Lria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (130)
T cd00619 81 LRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhhc
Confidence 9999999999866999999999999999999999999999999999876
No 26
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=99.95 E-value=1.3e-27 Score=216.94 Aligned_cols=116 Identities=36% Similarity=0.522 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcccccc---ceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhh
Q psy2382 279 SSIMKIMKLIKNGAQEK---NILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIK 355 (527)
Q Consensus 279 ~qL~~aL~~i~~~~~g~---G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~ 355 (527)
..++.+++.+.+ .|- .+.+.+|||+||+|+++++|.++++|||+|+|||||||+|+||||||+.+++|||+++|+
T Consensus 17 ~L~~ga~~~l~~--~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~sl~ 94 (138)
T TIGR00114 17 MLLKGAIDALKR--LGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLALD 94 (138)
T ss_pred HHHHHHHHHHHH--cCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHHhh
Confidence 446677777766 432 367789999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 356 NNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 356 ~~~Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
+++||+|||||++|++||++|+|++.+ .+..++|..+|..+
T Consensus 95 ~~~PV~~GvLt~~~~eQa~~R~~~~~~--------nkG~eaA~aal~m~ 135 (138)
T TIGR00114 95 YDKPVIFGILTTGTIEQAIERAGDKAG--------NKGVEAAVAALEMA 135 (138)
T ss_pred hCCCEEEEecCCCCHHHHHHHcccccc--------ccHHHHHHHHHHHH
Confidence 999999999999999999999999886 36888888877543
No 27
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=99.95 E-value=1e-27 Score=217.73 Aligned_cols=102 Identities=41% Similarity=0.703 Sum_probs=90.5
Q ss_pred HHHHHHHHhc-cccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCCC
Q psy2382 281 IMKIMKLIKN-GAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 359 (527)
Q Consensus 281 L~~aL~~i~~-~~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~P 359 (527)
|+.|.+.+.+ ++...++.+..|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|++++|
T Consensus 31 l~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~~~~P 110 (152)
T COG0054 31 LEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLETGVP 110 (152)
T ss_pred HHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHhhCCC
Confidence 4444444443 003345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccCcHHHHHHhhhhhhh
Q psy2382 360 IINAILTTETIEQANSRILTKVN 382 (527)
Q Consensus 360 v~~gvlt~~~~~qa~~r~g~~~~ 382 (527)
|+|||||++|++||++|+|.+.|
T Consensus 111 V~~GVLt~~~~eqA~~rag~~~g 133 (152)
T COG0054 111 VTFGVLTTDNIEQAIERAGTKAG 133 (152)
T ss_pred eEeeecCCCcHHHHHHHhCcccc
Confidence 99999999999999999999987
No 28
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.94 E-value=9.8e-27 Score=209.20 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q psy2382 392 RAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLL 470 (527)
Q Consensus 392 ~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~ILR 470 (527)
++|+.|+|+||++..++.++++ +.+.+.. .. ++.|++|+++|++|+++|+.+||++|+++++|+++++++++++|||
T Consensus 2 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~-~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~~~~~~~~~~~~~iLr 79 (126)
T cd00620 2 NARSTAAEVLRDVLQRGASLNAVLSALQKK-DK-SDRDRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDVRNLLR 79 (126)
T ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCccccCHHHHHHHH
Confidence 5799999999999998888875 4444443 22 6789999999999999999999999999988888899999999999
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 471 IGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 471 la~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
+|+|||+|++ +|++++|||||++||+|+.+++++|||||||++.|+
T Consensus 80 ~a~~el~~~~-~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 80 LGLYQLLYLD-VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhcc
Confidence 9999999985 999999999999999999999999999999999884
No 29
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=99.94 E-value=7.4e-27 Score=215.03 Aligned_cols=112 Identities=20% Similarity=0.405 Sum_probs=95.1
Q ss_pred HHHHHHHHhccccc---cceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhC
Q psy2382 281 IMKIMKLIKNGAQE---KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNN 357 (527)
Q Consensus 281 L~~aL~~i~~~~~g---~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~ 357 (527)
|+.|++.+.+ .| ..+.+.+|||+||+|+.++++.++++|||+|+|||||||+|+||||||+++++|||+++|+++
T Consensus 29 l~gA~~~l~~--~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~ 106 (158)
T PRK12419 29 RKGFVAEIAA--RGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQLDTE 106 (158)
T ss_pred HHHHHHHHHH--cCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHHhccC
Confidence 6677777766 44 458889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecccCcHHHHHH-----hhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 358 IPIINAILTTETIEQANS-----RILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 358 ~Pv~~gvlt~~~~~qa~~-----r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
+||+|||||++|++||++ |+|.+ .+.++.|..+|...
T Consensus 107 ~PV~fGVLT~~~~eqA~~rqa~~Ra~~~----------nKG~eaA~aalem~ 148 (158)
T PRK12419 107 VPVFSVVLTPHHFHESEEHHDFFRAHFV----------VKGAEAAHACADTL 148 (158)
T ss_pred CCEEEEecCCCcHHHHHHHHHHhhcCcc----------ccHHHHHHHHHHHH
Confidence 999999999999996666 45433 24667766666443
No 30
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=99.94 E-value=2.1e-26 Score=212.74 Aligned_cols=114 Identities=38% Similarity=0.581 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhccccc---cceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhh
Q psy2382 279 SSIMKIMKLIKNGAQE---KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIK 355 (527)
Q Consensus 279 ~qL~~aL~~i~~~~~g---~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~ 355 (527)
..++.+++.+.+ .| ..|.+.+|||+||+|++++.|.++++|||+|+|||||||+|+||||||+.+++|||+++|+
T Consensus 29 ~l~~ga~~~l~~--~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~ 106 (154)
T PRK00061 29 ALLEGALDALKR--HGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLE 106 (154)
T ss_pred HHHHHHHHHHHH--cCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhc
Confidence 447777777776 44 4588889999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHH
Q psy2382 356 NNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIY 402 (527)
Q Consensus 356 ~~~Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly 402 (527)
+++||+|||||++|++||++|+|.+.+. +.+++|--+|.
T Consensus 107 ~~~PV~~GVLt~~~~eQa~~R~~~~~~n--------kG~eaa~aal~ 145 (154)
T PRK00061 107 TGVPVGFGVLTTDTIEQAIERAGTKAGN--------KGAEAALAALE 145 (154)
T ss_pred cCCCEEEEecCCCCHHHHHHHhCccccc--------cHHHHHHHHHH
Confidence 9999999999999999999999976662 45555555443
No 31
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=99.94 E-value=3.7e-27 Score=227.44 Aligned_cols=158 Identities=15% Similarity=0.231 Sum_probs=137.0
Q ss_pred hhhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHH
Q psy2382 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLI 288 (527)
Q Consensus 209 v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i 288 (527)
|+++++.++||.||+|++++|++..++.+|+||++|+|++++||||||||+|+++|+|+|.+|||+ +||+.||++|
T Consensus 3 v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~----~~L~~Al~~I 78 (197)
T PRK00393 3 LKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCG----FQLEAALERI 78 (197)
T ss_pred EEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCc----chHHHHHHHH
Confidence 788999999999999999999999999999999999999888999999999999999999999999 9999999999
Q ss_pred hccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCce
Q psy2382 289 KNGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPII 361 (527)
Q Consensus 289 ~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~ 361 (527)
++ +|+| |+.++++| ++..++.++.+++. +++|+...+|+.- +.+.|..-|+.+. .|+.++.|.+|+|
T Consensus 79 ~~--~G~GVlVyL~~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~--d~R~yGiGAQIL~dLGV~~mrLLtn~~-- 152 (197)
T PRK00393 79 AE--EGRGILLYLRQEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAA--DERDYTLAADMLKALGVKKVRLLTNNP-- 152 (197)
T ss_pred HH--cCCEEEEEEcCCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCc--cceehhHHHHHHHHcCCCEEEECCCCH--
Confidence 99 9999 55565566 67778888887764 3455555777643 6899998888885 6999999999999
Q ss_pred eeecccCcHHHHHHhhhhhhhc
Q psy2382 362 NAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 362 ~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
.+-.+++.-|+.+-+
T Consensus 153 -------~k~~~L~g~GleV~~ 167 (197)
T PRK00393 153 -------KKVEALTEAGINIVE 167 (197)
T ss_pred -------HHHHHHHhCCCEEEE
Confidence 577889988888753
No 32
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=99.93 E-value=3.5e-26 Score=209.62 Aligned_cols=118 Identities=36% Similarity=0.530 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhC
Q psy2382 279 SSIMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNN 357 (527)
Q Consensus 279 ~qL~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~ 357 (527)
.-|+.+++.+.++ +....+.+++|||+||+|+++++|.+.++|||+|+|||||||+|+||||||+.+++|||+++|+++
T Consensus 20 ~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~ 99 (144)
T PF00885_consen 20 RLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYG 99 (144)
T ss_dssp HHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCC
Confidence 4467777777661 122368889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 358 IPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 358 ~Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
+||+|||||++|.+||++|+|++.+. +.|+.|..+|.-+
T Consensus 100 ~PV~~gvlt~~~~eqa~~R~~~~~~n--------kG~eaA~aal~m~ 138 (144)
T PF00885_consen 100 IPVIFGVLTPDTEEQALERAGGKAGN--------KGREAAEAALEMA 138 (144)
T ss_dssp SEEEEEEEEESSHHHHHHHCEETTEE--------HHHHHHHHHHHHH
T ss_pred ccEEEEecCCCCHHHHHHHhcchhhh--------hHHHHHHHHHHHH
Confidence 99999999999999999999997773 7888877766544
No 33
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=99.93 E-value=1.3e-26 Score=222.80 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=134.2
Q ss_pred hhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHh
Q psy2382 210 KRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIK 289 (527)
Q Consensus 210 ~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~ 289 (527)
+++++.++||.||+|++++|++..++.+|+|||+|++.++.||||||||+|.++|+|+|.+|||+ +||+.||++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~----~~L~~al~~i~ 76 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCG----FQLEAALKQIA 76 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCC----chHHHHHHHHH
Confidence 46789999999999999999999999999999999998888999999999999999999999999 99999999999
Q ss_pred ccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCcee
Q psy2382 290 NGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIIN 362 (527)
Q Consensus 290 ~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~ 362 (527)
+ +|.| |+.++++| ++..++.++.+++. +++++..++|..- +.+.|..-|+.+. .|+.++.|.||+|
T Consensus 77 ~--~G~GVlVyL~~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~--d~R~yGiGAQIL~dLGV~~~rLLtn~~--- 149 (191)
T TIGR00505 77 E--EGRGVLIYLRQEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPA--DERDFSLCADILEDLGVKKVRLLTNNP--- 149 (191)
T ss_pred h--cCCEEEEEECCCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcc--cceehhHHHHHHHHcCCCEEEECCCCH---
Confidence 9 9999 55566566 67778888887664 3556666777643 6889998888885 6999999999999
Q ss_pred eecccCcHHHHHHhhhhhhh
Q psy2382 363 AILTTETIEQANSRILTKVN 382 (527)
Q Consensus 363 gvlt~~~~~qa~~r~g~~~~ 382 (527)
.+--+++..|+.+-
T Consensus 150 ------~k~~~L~g~gleVv 163 (191)
T TIGR00505 150 ------KKIEILKKAGINIV 163 (191)
T ss_pred ------HHHHHHHhCCCEEE
Confidence 56778887777754
No 34
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=99.92 E-value=3.2e-25 Score=202.38 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhccccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCC
Q psy2382 279 SSIMKIMKLIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 358 (527)
Q Consensus 279 ~qL~~aL~~i~~~~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~ 358 (527)
+-+..|++.+.+...+..|.+.+|||+||+|+++++|.++++|||+|+|||||||+|+||||| ++++|||+++|++++
T Consensus 13 ~M~~gA~~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V--~vs~GL~~lsl~~~~ 90 (151)
T TIGR01506 13 DMGGAAIDELRKHTAGIKIIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYH--EASTGLIQVQLMTNK 90 (151)
T ss_pred hHHHHHHHHHHhcCCCCeEEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHH--HHHHHHHHHHhhhCC
Confidence 345667777765112223888999999999999999998888999999999999999999999 999999999999999
Q ss_pred CceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHHHh
Q psy2382 359 PIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQWLF 406 (527)
Q Consensus 359 Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v~~ 406 (527)
||+| |||++|++||++|+|.+.+ .+.++.|..+|.-+..
T Consensus 91 PVi~-VlT~e~eeQA~~Rag~~~~--------nkG~eaA~aaleMi~l 129 (151)
T TIGR01506 91 HVID-VTVHEDEAEDPEELKVLAD--------NRAREHAQNLIMLLFK 129 (151)
T ss_pred CEEE-EEeeCCHHHHHHHhccccc--------ChHHHHHHHHHHHHHH
Confidence 9999 9999999999999999887 4789999888876643
No 35
>KOG3243|consensus
Probab=99.92 E-value=4.2e-25 Score=192.77 Aligned_cols=102 Identities=36% Similarity=0.559 Sum_probs=93.2
Q ss_pred HHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCCC
Q psy2382 281 IMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 359 (527)
Q Consensus 281 L~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~P 359 (527)
++.|++++++| +.++++.+..|||+||+|..++++.+.++|||+|++|++|||+|.|||||++.+++|+|++++.+++|
T Consensus 36 vkGAiEtm~~~~V~eenI~ie~VPGS~Elp~g~~~~~~r~~~daVi~IGvlIkGsTmHfeyis~s~~hglm~~~~~sgvP 115 (158)
T KOG3243|consen 36 VKGAIETMKKYSVREENIEIEWVPGSFELPVGAQNLGKRGKFDAVICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVP 115 (158)
T ss_pred HHHHHHHHHHhCcchhceeEEEcCCceeccHHHHhhhhccCceEEEEEEEEEecCchhHHHHHHHHHHHHhhhcccCCCC
Confidence 45566666553 24556888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccCcHHHHHHhhhhhhh
Q psy2382 360 IINAILTTETIEQANSRILTKVN 382 (527)
Q Consensus 360 v~~gvlt~~~~~qa~~r~g~~~~ 382 (527)
|+||+|||.|+|||+.|+|++.|
T Consensus 116 vIfGlLTc~~eeQAL~RaG~~~g 138 (158)
T KOG3243|consen 116 VIFGLLTCEDEEQALNRAGGKAG 138 (158)
T ss_pred EEEEEeeeccHHHHHHhhccccc
Confidence 99999999999999999999988
No 36
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=99.90 E-value=1.2e-24 Score=209.53 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=130.1
Q ss_pred hhhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHH
Q psy2382 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLI 288 (527)
Q Consensus 209 v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i 288 (527)
|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|.++|+||+.+|||+ +||+.||++|
T Consensus 2 V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~----~~L~~Al~~I 77 (193)
T cd00641 2 VEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCG----PQLEEALEEI 77 (193)
T ss_pred eEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCc----chHHHHHHHH
Confidence 678999999999999999999999999999999999999888999999999999999999999999 9999999999
Q ss_pred hccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCce
Q psy2382 289 KNGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPII 361 (527)
Q Consensus 289 ~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~ 361 (527)
++ +|.| |+.++++| ++..++.++.+++. +++++.-.+|.. -+.+.|.+-|+.+. .|+.++.|.+|+|
T Consensus 78 a~--~g~GVlV~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~--~d~R~yGiGAQIL~dLGv~~mrLLs~~~-- 151 (193)
T cd00641 78 AE--EGGGVLLYLRQEGRGIGLANKLRAYALQDQGLDTVEANEALGFP--ADARDYGLAAQILRDLGIKSVRLLTNNP-- 151 (193)
T ss_pred HH--hCCEEEEEECCCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCC--ccccchHHHHHHHHHcCCCeEEECCCCH--
Confidence 99 9999 44455455 55567777766554 234443456653 36788998888885 6999999999988
Q ss_pred eeecccCcHHHHHHhhhhhhh
Q psy2382 362 NAILTTETIEQANSRILTKVN 382 (527)
Q Consensus 362 ~gvlt~~~~~qa~~r~g~~~~ 382 (527)
.+-.|+.--|+.+-
T Consensus 152 -------~k~~~L~gfglevv 165 (193)
T cd00641 152 -------DKIDALEGYGIEVV 165 (193)
T ss_pred -------HHHHHHHhCCCEEE
Confidence 46677876666654
No 37
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.90 E-value=2.6e-23 Score=187.21 Aligned_cols=124 Identities=28% Similarity=0.462 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCHHHHHHHH
Q psy2382 393 AREFALQGIYQWLFN-NMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYVVLL 470 (527)
Q Consensus 393 aRe~A~q~Ly~v~~~-~~~~~~l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~~~r~ILR 470 (527)
+|+.|+++||++... +.+.+.+...... ..+++.|++|++++++|+++|+..||++|++++ +|+++|++..++.||+
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~~~~~~r~~~~~~~il~ 80 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSALEK-LQLAKKDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRAILR 80 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHH-cccchhHHHHHHHHHHHHHHhHHHHHHHHHHHccCCChhhhhHHHHHHHH
Confidence 699999999999887 7777655444332 246678999999999999999999999999965 7899999999999999
Q ss_pred HHHHHhhcCC-CCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 471 IGTYELKSHY-KIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 471 la~yELl~~~-~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
++.+|+.++. ++|++++|||+|++||+|+.+++++|||||||++.|+
T Consensus 81 l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r~ 128 (129)
T cd00447 81 LLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred HHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhhc
Confidence 9999988875 6899999999999999999999999999999999875
No 38
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.88 E-value=1.6e-22 Score=218.18 Aligned_cols=126 Identities=19% Similarity=0.284 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q psy2382 392 RAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLL 470 (527)
Q Consensus 392 ~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~ILR 470 (527)
++|+.|+|+||+++.++.+++. +.++++. ..+++.|++|+++|++|++||+..||++|+++++|+++++++++|++||
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~~~~-~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~~~~~rl~~~~r~iLr 81 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRMLER-SSLERNDRALATELVNGVLRYRLQLDFIISRFYHHDLEKAAPVLKNILR 81 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 6899999999999998888875 4445543 3578899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 471 IGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 471 la~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
+|+|||+|++++|++++|||+|++||+|+.+++++|||||||++.|+.
T Consensus 82 la~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~ 129 (445)
T PRK14904 82 LGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPET 129 (445)
T ss_pred HHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhh
Confidence 999999998789999999999999999999999999999999999975
No 39
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.88 E-value=1.8e-22 Score=216.62 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q psy2382 392 RAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLL 470 (527)
Q Consensus 392 ~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~ILR 470 (527)
++|+.|+|+||+++.++.+++. +.++++ .++++|++|+++|++||++|+..||++|+++++|+++++++++|+|||
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~~~---~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~~~~l~~~~r~iLr 79 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPALQQ---KVSDKDRALLQELCYGVLRRLPRLEWLIAQLLAKPLKGKQRIVHALLL 79 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCccccCHHHHHHHH
Confidence 6899999999999999988875 455443 467889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 471 IGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 471 la~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
+|+|||+|++ +|++++|||+|++||+|+.+++++|||||||++.|+.
T Consensus 80 la~yell~~~-iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~ 126 (427)
T PRK10901 80 VGLYQLLYTR-IPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQ 126 (427)
T ss_pred HHHHHHhccC-CCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhh
Confidence 9999999985 9999999999999999999999999999999999863
No 40
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.87 E-value=5.1e-22 Score=213.63 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q psy2382 392 RAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLL 470 (527)
Q Consensus 392 ~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~ILR 470 (527)
++|+.|+++||+++. +.+++. +.+++.. ..+++.|++|+++|+|||+||+..||++|+++.+|++.++++++|+|||
T Consensus 2 ~~R~~A~~~L~~i~~-~~~~~~~l~~~~~~-~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~~~~~~l~~~~r~iLr 79 (434)
T PRK14901 2 NARQLAWEILQAVAR-GAYADVALERVLRK-YPLSGADRALVTELVYGCIRRRRTLDAWIDQLGKKPAHKQPPDLRWLLH 79 (434)
T ss_pred CHHHHHHHHHHHHHc-CCchHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhcCHHHHHHHH
Confidence 479999999999988 566664 5666654 3578899999999999999999999999999999988999999999999
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 471 IGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 471 la~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
+|+|||+|++++|++++|||+|++||+|+.+++++|||||||++.|+.
T Consensus 80 la~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~ 127 (434)
T PRK14901 80 LGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAR 127 (434)
T ss_pred HHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhh
Confidence 999999999889999999999999999999889999999999999964
No 41
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.87 E-value=8.8e-22 Score=212.39 Aligned_cols=126 Identities=26% Similarity=0.315 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q psy2382 391 HRAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVL 469 (527)
Q Consensus 391 ~~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~IL 469 (527)
+++|+.|+++||+++.++.++++ +.+++.. ..+++.|++|+++|++|+++|+..||++|++++++ ++++++++|+||
T Consensus 3 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~~-~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~~-~~~l~~~~r~iL 80 (444)
T PRK14902 3 MNARELALEVLIKVENNGAYSNIALNKVLKK-SELSDKDKALLTELVYGTIQRKLTLDYYLAPFIKK-RKKLDPWVRNLL 80 (444)
T ss_pred ccHHHHHHHHHHHHHhcCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-hhhCCHHHHHHH
Confidence 37899999999999999988875 4555543 46888999999999999999999999999999887 899999999999
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 470 LIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 470 Rla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
|+|+|||+|++++|++++|||||++||+|+++++++|||||||++.++.
T Consensus 81 rla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~ 129 (444)
T PRK14902 81 RMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREG 129 (444)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhcc
Confidence 9999999998789999999999999999999999999999999999874
No 42
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.86 E-value=3.9e-21 Score=185.26 Aligned_cols=111 Identities=19% Similarity=0.316 Sum_probs=97.0
Q ss_pred hCCCCHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy2382 406 FNNMDVN-LIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIEYVVLLIGTYELKSHYKIP 483 (527)
Q Consensus 406 ~~~~~~~-~l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~~~r~ILRla~yELl~~~~iP 483 (527)
.++.+.. ++.+.+...+ .+++++|+++++|||++|+..||++|++++ +|+++|+++++++|||+|+|||+|+ ++|
T Consensus 91 ~ng~s~~~~lp~ll~~~~--q~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~W~l~rL~~idr~ILRlavyELl~l-~~P 167 (207)
T PRK09634 91 INRLSAALELPELLQLAD--QEEVREYALERIGAVIRNRKEIDQLLDTVMVGWQLKRLPRIDRDILRLAVVEILFL-NTP 167 (207)
T ss_pred HccccHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhc-CCC
Confidence 4555554 4555554311 278999999999999999999999999975 6999999999999999999999998 799
Q ss_pred chhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhccc
Q psy2382 484 YKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIR 519 (527)
Q Consensus 484 ~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~ 519 (527)
++++|||||++||+|+.+++++|||||||++.|...
T Consensus 168 ~~vaINEAVeLAK~~~~~~~~~FVNaVLrri~r~~~ 203 (207)
T PRK09634 168 AAVAINEAVELAKRYSDEQGRRFINGVLRRLQDALS 203 (207)
T ss_pred chhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999864
No 43
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.84 E-value=1.6e-20 Score=201.63 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q psy2382 394 REFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLLIGT 473 (527)
Q Consensus 394 Re~A~q~Ly~v~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~ILRla~ 473 (527)
|+.|+|+||+++.++.+++.+... ...+++.|++|+++||+||++|+.+||++|+++++|++++++++++ +||+++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~---~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~~~~~~l~~~~~-~L~~~~ 76 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL---QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMDRPMKGKPRTVH-YLILVG 76 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCccccCHHHH-HHHHHH
Confidence 789999999999888665544332 2357788999999999999999999999999999999999999877 888888
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhccc
Q psy2382 474 YELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIR 519 (527)
Q Consensus 474 yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~ 519 (527)
||++|..++|++++|||||+|||+|+.+++++|||||||++.|+..
T Consensus 77 ~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~ 122 (426)
T TIGR00563 77 LYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQE 122 (426)
T ss_pred HHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcch
Confidence 8887766899999999999999999999999999999999999643
No 44
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.81 E-value=1.7e-19 Score=193.78 Aligned_cols=119 Identities=18% Similarity=0.319 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q psy2382 392 RAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVLL 470 (527)
Q Consensus 392 ~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~ILR 470 (527)
++|++|+++|+++...+.+++. +.+.+. .++++|++|+++|+|||+||+..||++|+++++.+ ++++++|++||
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~~---~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~~~--~l~~~~r~iLr 78 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSVLS---FLDDKDRRFFKELVWGVVRKEELLDWYINQLLKKK--DIPPAVRVALR 78 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Confidence 5799999999999998887764 555554 47899999999999999999999999999987543 69999999999
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 471 IGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 471 la~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
+|+|||+|++++|++++|||+|++||++ .+++|||||||++.|+.
T Consensus 79 ~~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~ 123 (431)
T PRK14903 79 MGAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVP 123 (431)
T ss_pred HHHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhh
Confidence 9999999986579999999999999986 46799999999999863
No 45
>PRK07198 hypothetical protein; Validated
Probab=99.77 E-value=5.3e-19 Score=181.76 Aligned_cols=140 Identities=12% Similarity=0.104 Sum_probs=116.4
Q ss_pred EEEEEEeeCCCCcEEEEEEeccCC----CCCCccEEEcccCcchhhccCCCCCCCCCChhH----HHHHHHHHhcccccc
Q psy2382 224 FKIIVYIDKINNDIHLTLIYGSIN----PNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISS----IMKIMKLIKNGAQEK 295 (527)
Q Consensus 224 f~~~~y~~~~~~~eh~alv~G~~~----~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~q----L~~aL~~i~~~~~g~ 295 (527)
-.+++|+.+.++.+|+ ++|+++ +..|+||||||+|++||+|||.+|||+ +| |+.||+.|++ +|.
T Consensus 210 ~~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVLVRVHSeC~tgDVFGSlrCDCg----~qL~~aLe~Amk~Iae--eG~ 281 (418)
T PRK07198 210 PDLEVFLPPIGGQTVY--IFGDVTDLADPETELTCRVHDECNGSDVFGSDICTCR----PYLTHGIEECIRGAQR--GGV 281 (418)
T ss_pred cceEEEcCCCCCeeEE--EECCcccccCCCCCceEEEeccccccccccCCCCCch----HHHHHHHHHHHHHHHh--cCC
Confidence 4789999999999954 899984 367899999999999999999999999 77 5788999999 898
Q ss_pred c---eeeecCCC-ccccHHHHHHhhh----cCCccEE-----EEeeceeeCCCchhHHHHHHHH-HHHHHH-hhhhCCCc
Q psy2382 296 N---ILHISVPG-ALEIPLALKNIIQ----IKKFNVL-----IAIGVIIRGETYHFELIANETI-SNIMQI-SIKNNIPI 360 (527)
Q Consensus 296 G---~l~~~vpG-~le~p~~a~~l~~----~~~~da~-----i~lG~vi~g~t~h~~~v~~~~~-~gl~~~-~l~~~~Pv 360 (527)
| |+.+++++ ++..++.+|.+++ .+++|++ ..+|. + +.+.|...|+.+. .|+.++ .|.||+|
T Consensus 282 GVLVYLrQEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~--~-D~RdyGlGAQILrdLGV~Km~RLLTNnp- 357 (418)
T PRK07198 282 GLIVYNRKEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGV--Q-DMRFQELMPDVLHWLGIRRIHRLVSMSN- 357 (418)
T ss_pred eEEEEeCCCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCC--C-cceehhHHHHHHHHhCCChhhhhcCCCH-
Confidence 9 77788777 7888999998764 2355543 22444 2 7899998888885 799999 9999999
Q ss_pred eeeecccCcHHHHHHhhhhhhhc
Q psy2382 361 INAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 361 ~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
.+..+++..|+.+-+
T Consensus 358 --------~K~~gL~GfGLEVVE 372 (418)
T PRK07198 358 --------MKYDAITGSGIEVGE 372 (418)
T ss_pred --------HHHHHHHhCCCEEEE
Confidence 688999999999765
No 46
>PRK06455 riboflavin synthase; Provisional
Probab=99.65 E-value=5.4e-16 Score=142.01 Aligned_cols=111 Identities=20% Similarity=0.296 Sum_probs=84.2
Q ss_pred HHHHHHHHhcccccc--ceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCC
Q psy2382 281 IMKIMKLIKNGAQEK--NILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 358 (527)
Q Consensus 281 L~~aL~~i~~~~~g~--G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~ 358 (527)
+..|++.+.+ .+. .|.+++|||+||+|+++++|.++++|||+|+|||| |+|.||||||++++.|||+++|+|++
T Consensus 17 ~~gAi~~L~~--~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~V--G~t~h~d~Va~~vS~GL~~lsL~t~~ 92 (155)
T PRK06455 17 GSAAIDELRK--LDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMP--GPTEKDKYCAHEASIGLIMAQLMTNK 92 (155)
T ss_pred HHHHHHHHHh--cCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecce--eccCcchhHHHHHHHHHHHHHhhhCC
Confidence 5667777776 443 37889999999999999999988899999999999 78999999999999999999999999
Q ss_pred CceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 359 PIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 359 Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
||++--.--+.-+.-.+=.-+.. ..+|+-|.++.+-+
T Consensus 93 PVi~v~vhede~~~~~~l~~~~~---------~r~~~h~~n~~~~~ 129 (155)
T PRK06455 93 HIIEVFVHEDEAKDEKELKELAE---------DRAREHAENLVKLL 129 (155)
T ss_pred CEEEEEecccccCCHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 99884433221111111111212 35888888865544
No 47
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=97.25 E-value=0.0033 Score=56.25 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=74.1
Q ss_pred HHHHHhccccccc--eeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCCCce
Q psy2382 284 IMKLIKNGAQEKN--ILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPII 361 (527)
Q Consensus 284 aL~~i~~~~~g~G--~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~Pv~ 361 (527)
|.+.+.+ .-.| |.+++|||--.+|.++++|.+...-|.+++||.+- .|.-.-+.+-..+.||+.++|.||.-|+
T Consensus 20 ai~~lk~--~~~~~~i~R~TVPGIKdlpvaakrLieeeGCd~Vi~lG~~G--~t~~Dk~~~~~aS~GLi~~QlmTn~hii 95 (154)
T COG1731 20 AIDELKK--LLPGIKIKRYTVPGIKDLPVAAKRLIEEEGCDIVIALGWVG--PTEKDKYSYLAASIGLIMAQLMTNKHII 95 (154)
T ss_pred HHHHHHh--hCCCCceEEeeCCCcccChHHHHHHHHhcCCcEEEEccCcC--cchhhHHHHHHHhhHHHHHHHHcCCeEE
Confidence 5556666 3334 77889999999999999999999999999999984 5665555555567899999999998864
Q ss_pred eeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 362 NAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 362 ~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
- |-.-+++...-+..-.-+- ..+|+-|.++.+-+
T Consensus 96 d-V~VHEDEa~dekeL~~la~--------~RareHa~Nlv~ll 129 (154)
T COG1731 96 D-VTVHEDEAEDEKELKELAV--------DRAREHAENLVKLL 129 (154)
T ss_pred E-EEeeccccCCHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3 3222333222111111111 35888888766544
No 48
>KOG1284|consensus
Probab=96.10 E-value=0.0029 Score=65.00 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=65.1
Q ss_pred ccccccC-CcccEEEEEEeeCCCCcEEEEEEeccCCC-------------------------------------------
Q psy2382 213 AEYNINT-LYGNFKIIVYIDKINNDIHLTLIYGSINP------------------------------------------- 248 (527)
Q Consensus 213 ~~~~lpt-~~G~f~~~~y~~~~~~~eh~alv~G~~~~------------------------------------------- 248 (527)
...++|+ ++|.|-++.|....++.+|++++.|....
T Consensus 66 i~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~ 145 (357)
T KOG1284|consen 66 IPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYET 145 (357)
T ss_pred hhhhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhccccccccccccccccccccccc
Confidence 3345553 45677777777777777777777665321
Q ss_pred ----------CCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHh-ccccccceee---ecCCC-ccccHHHHH
Q psy2382 249 ----------NKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIK-NGAQEKNILH---ISVPG-ALEIPLALK 313 (527)
Q Consensus 249 ----------~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~-~~~~g~G~l~---~~vpG-~le~p~~a~ 313 (527)
+..+.||.|++|.|+..++|-+|+|+ .|++.+=..+. .|....|.+. +++.| .+-....++
T Consensus 146 ~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~p----edf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~ 221 (357)
T KOG1284|consen 146 AFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCP----EDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLY 221 (357)
T ss_pred ceeEEEehhcCccceeEEecccccchhhcccccCCh----hhhccccccccceeecCCCeEEEccccccchhHHHHcCCC
Confidence 45678999999999999999999999 99988776665 1102236443 44455 444444444
Q ss_pred Hh
Q psy2382 314 NI 315 (527)
Q Consensus 314 ~l 315 (527)
.+
T Consensus 222 pl 223 (357)
T KOG1284|consen 222 PL 223 (357)
T ss_pred ch
Confidence 33
No 49
>KOG3009|consensus
Probab=67.94 E-value=22 Score=38.80 Aligned_cols=166 Identities=20% Similarity=0.231 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCeEEEEeC----C---CCCCceeEEEEcCCC-CHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccC
Q psy2382 10 KEIISELKIGNMIILVDS----E---NRENEGDIILSSDFV-TPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNN 81 (527)
Q Consensus 10 ~~ai~~lr~G~~Vvv~D~----~---~re~e~dlv~aAe~~-t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~ 81 (527)
.+.-++|..|+|||.... + --+|..--...-+.+ .+..+-.-+....|.+|+-++++....|++..-.....
T Consensus 30 pqv~eal~~~epVValestiitHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~g~~~~kv 109 (614)
T KOG3009|consen 30 PQVKEALANGEPVVALESTIITHGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASSGPSAVKV 109 (614)
T ss_pred HHHHHHHhcCCCEEEeEeeeeecCCcCCcccccccchhhhhhcCCCcchhhhhhcceeeecCCHHHHHHHhhcCcccccc
Confidence 466789999999998753 0 111111000000000 01111122333468999999999999999865432233
Q ss_pred CCCCCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhH-HHHHHHHHhCCC
Q psy2382 82 SSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTE-AGCDLTKLAGLT 160 (527)
Q Consensus 82 ~~~~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtE-aav~L~rlAgl~ 160 (527)
+...-++++++-.. |-||+-+ |+. +|. -....=|+.||- |||-+-+.|+- ++-||-.| |-.
T Consensus 110 srRD~~~v~i~rlv-ggTtvaa------Tm~-iA~-~~gI~vfaTggi--------ggvhr~An~smdisadl~el-grt 171 (614)
T KOG3009|consen 110 SRRDIASVVIVRLV-GGTTVAA------TMI-IAH-AAGIVVFATGGI--------GGVHRGANQSMDISADLTEL-GRT 171 (614)
T ss_pred ccccccccceeeec-CCcchhh------hhh-hcc-cceEEEEecCCc--------chhhhccccccchhhhhhhh-cCC
Confidence 34446677776653 4555433 221 111 112234666663 45543333332 45555555 789
Q ss_pred CcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEehh
Q psy2382 161 PSAVICEILNDDGTMARLPDLIKFSKLHNIKIGTIS 196 (527)
Q Consensus 161 Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~ 196 (527)
|.+|+|+=|. +.++.+-..+|-+.++.++++..
T Consensus 172 pvavv~agvk---siLdip~tle~letq~V~vvtlg 204 (614)
T KOG3009|consen 172 PVAVVSAGVK---SILDIPKTLEYLETQGVVVVTLG 204 (614)
T ss_pred cceEEecchh---hhccchhhhhhhccccEEEEEeC
Confidence 9999998764 36677777888888888888764
No 50
>PF09185 DUF1948: Domain of unknown function (DUF1948); InterPro: IPR015268 Members of this family of Mycoplasma hypothetical proteins adopt a helical structure, with one central alpha-helix surrounded by five others, in a NusB-like fold. Their function has not, as yet, been determined []. ; PDB: 1Q8C_A.
Probab=59.29 E-value=1.2e+02 Score=26.46 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHhHHHHHHHHHh------------hc
Q psy2382 389 PRHRAREFALQGIYQWLFN-NMDVNLIETYIKEISNFYKVD-KKYFYLILRGVINDINFLRYDLSL------------II 454 (527)
Q Consensus 389 ~r~~aRe~A~q~Ly~v~~~-~~~~~~l~~~~~~~~~~~~~d-~~~~~~Lv~gvlr~~~~LD~~I~~------------~~ 454 (527)
+|...|.+.+..+|+..+- ....+.+...+-+. +..++. ..+-..+|...-++.-+....|+. +-
T Consensus 2 trtqrriaivefif~~lfflpk~a~~iqa~fl~y-d~~er~ln~wqk~ivk~fse~~~~f~~~ie~qq~~nq~eiq~kyn 80 (140)
T PF09185_consen 2 TRTQRRIAIVEFIFSTLFFLPKEADQIQADFLDY-DTPERQLNDWQKEIVKVFSENCFSFQKKIENQQQRNQAEIQSKYN 80 (140)
T ss_dssp -HHHHHHHHHHHHHHHGGG----HHHHHHHHHHT---TTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH---S------
T ss_pred cchhhhHHHHHHHHHHHHhCcccHHHHHHHHHhc-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777788888887552 22233332222221 111111 133344555444554444444431 11
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHH
Q psy2382 455 DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKV 514 (527)
Q Consensus 455 ~~~l~rl~~~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i 514 (527)
+.+=++++....++...++.|-.- ..+.....|+||.-+-..|+....++=-+|.|+++
T Consensus 81 kisgkkidllt~avilcalseq~a-~~tdkplliseallimdhysq~~ekkqthalldkl 139 (140)
T PF09185_consen 81 KISGKKIDLLTKAVILCALSEQHA-QNTDKPLLISEALLIMDHYSQVPEKKQTHALLDKL 139 (140)
T ss_dssp --------HHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHTT---TTS-S-TTTS--
T ss_pred ccccchhhHHHHHHHHHHhhHHHh-hcCCCchhHHHHHHHHHHHhhchhHHHHHHHHHhh
Confidence 112234556667788888888764 35788899999999999999877778888888875
No 51
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=52.28 E-value=65 Score=30.25 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=47.5
Q ss_pred hhhccCCCCC-CCCCChhHHHHHHHHHhccccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHH
Q psy2382 263 FDFLHAKTSS-CTQNNISSIMKIMKLIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELI 341 (527)
Q Consensus 263 gDvfgs~~cd-c~~~~~~qL~~aL~~i~~~~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v 341 (527)
.|...-.+|+ |. +.+..+.-.+ .||-+.-+||+-. +.+..++.+.||+|+.+|.
T Consensus 62 ~~g~~C~~Cg~C~------Ig~l~~lae~----~g~~v~i~~Ggt~----ar~~ik~~~p~~iigVAC~----------- 116 (158)
T PF01976_consen 62 SDGYNCKRCGKCD------IGDLKKLAEK----YGYKVYIATGGTL----ARKIIKEYRPKAIIGVACE----------- 116 (158)
T ss_pred CCCCcCCCCCCCc------hhHHHHHHHH----cCCEEEEEcChHH----HHHHHHHhCCCEEEEEech-----------
Confidence 3556656664 55 5555555444 4888777788532 2344455678899999994
Q ss_pred HHHHHHHHHHHhhhhCCCceeeecc
Q psy2382 342 ANETISNIMQISIKNNIPIINAILT 366 (527)
Q Consensus 342 ~~~~~~gl~~~~l~~~~Pv~~gvlt 366 (527)
..+..|+.++.- .++|+ .||+.
T Consensus 117 -~dL~~g~~~~~~-~~ip~-~gV~l 138 (158)
T PF01976_consen 117 -RDLISGIQDLKP-LGIPV-QGVLL 138 (158)
T ss_pred -HHHHHHHHHHhh-cCCCe-eEEEe
Confidence 235677777765 46785 45543
No 52
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=47.35 E-value=24 Score=28.68 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHcCCeEEEEeCC
Q psy2382 7 SSTKEIISELKIGNMIILVDSE 28 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~D~~ 28 (527)
.+|++...+|++|+.||++|..
T Consensus 37 ~kv~qv~~qL~~G~avI~~se~ 58 (70)
T PF06794_consen 37 EKVEQVKQQLKSGEAVIVFSEL 58 (70)
T ss_dssp HHHHHHHHHHHTTSEEEEE-TT
T ss_pred HHHHHHHHHHHcCCEEEEECCc
Confidence 3689999999999999999864
No 53
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=44.16 E-value=67 Score=33.48 Aligned_cols=92 Identities=14% Similarity=0.244 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHcCCeEEEE-eCCCCCCceeE--EEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCC
Q psy2382 7 SSTKEIISELKIGNMIILV-DSENRENEGDI--ILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSS 83 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~-D~~~re~e~dl--v~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~ 83 (527)
..+...+++||+|+.|-+. |.+=.++++.+ .|+-+..|+-..+.|++.++=-+ + |.....|.+
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~v-i------------p~~~~r~~~- 247 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAV-V------------PVFPVRNPD- 247 (308)
T ss_pred hhHHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCE-E------------EEEEEEeCC-
Confidence 5688999999999999555 54445555533 57888999999999999975333 2 222222222
Q ss_pred CCCceeEeEeccCCCCCCCChhhhHHHHHHHhc
Q psy2382 84 FGTNFTVSIEAANGVTTGISASDRAHTIKVASS 116 (527)
Q Consensus 84 ~~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~ 116 (527)
+..|+++|.+ ..|+--..|=+.+.+.+.+
T Consensus 248 -g~~y~l~i~p---~~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 248 -GSGYTLHIHP---PMTDDPSEDVEADAQRMND 276 (308)
T ss_pred -CCeEEEEEec---cccCCCCCCHHHHHHHHHH
Confidence 4468898876 2345555566666666654
No 54
>PRK04966 hypothetical protein; Provisional
Probab=38.97 E-value=33 Score=27.97 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHcCCeEEEEeCC
Q psy2382 7 SSTKEIISELKIGNMIILVDSE 28 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~D~~ 28 (527)
.+|++....|++|+.||++|..
T Consensus 37 ~kv~qv~~qL~~G~~viv~se~ 58 (72)
T PRK04966 37 QKVADVKRQLQSGEAVLVWSEL 58 (72)
T ss_pred HHHHHHHHHHHcCCEEEEECCC
Confidence 4789999999999999999864
No 55
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=35.38 E-value=42 Score=26.62 Aligned_cols=51 Identities=29% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 461 LSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 461 l~~~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
+++.+...|.--+-+. ..| .-+|++|++.|...+ ..+.++|++||.+..++
T Consensus 13 ls~~e~~~i~~~~~~~----~~~-~evI~~ai~~a~~~~-~~~~~Yi~~Il~~W~~~ 63 (73)
T TIGR01446 13 LSPFEMEDLKYWLDEF----GNS-PELIKEALKEAVSNN-KANYKYIDAILNNWKNN 63 (73)
T ss_pred CCHHHHHHHHHHHHHh----CCC-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 4555555544322222 233 568999999998743 44679999999998765
No 56
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=34.08 E-value=30 Score=26.32 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=13.6
Q ss_pred hHHHHHHHhcCCcEEehhcH
Q psy2382 179 PDLIKFSKLHNIKIGTISNL 198 (527)
Q Consensus 179 ~~~~~~A~~~~l~~v~~~dl 198 (527)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46789999999999999994
No 57
>PRK00304 hypothetical protein; Provisional
Probab=32.50 E-value=80 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHcCCeEEEEeCC
Q psy2382 7 SSTKEIISELKIGNMIILVDSE 28 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~D~~ 28 (527)
.+|++...+|++|+.||++|..
T Consensus 36 ~kv~qv~~qL~~G~~vIvfse~ 57 (75)
T PRK00304 36 TRVLRVRQALTKGQAVILFDPE 57 (75)
T ss_pred HHHHHHHHHHHcCCEEEEECCC
Confidence 4689999999999999999864
No 58
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=30.64 E-value=84 Score=35.69 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=57.7
Q ss_pred cHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHH--HHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCC
Q psy2382 8 STKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNA--INFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFG 85 (527)
Q Consensus 8 ~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~--~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~ 85 (527)
.+++..+++++|+.|+|+-|-| ++.+|... ..+|.+.+--.+...++.+.-+--||....-..-...+
T Consensus 58 a~~ri~~ai~~~e~I~I~gDyD----------~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~ 127 (575)
T PRK11070 58 AVELLYNALREGTRIIVVGDFD----------ADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARG 127 (575)
T ss_pred HHHHHHHHHHCCCEEEEEEecC----------ccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcC
Confidence 4677778999999999998765 33444443 55677764324666666555555555432111111235
Q ss_pred CceeEeEeccCCCCCCCChhhhHHHHHHH
Q psy2382 86 TNFTVSIEAANGVTTGISASDRAHTIKVA 114 (527)
Q Consensus 86 ~~f~vsvd~~~g~~TGisa~dRa~ti~~l 114 (527)
+..-|+||- |||+.+...-++.+
T Consensus 128 ~~LiItvD~------Gi~~~e~i~~a~~~ 150 (575)
T PRK11070 128 AQLIVTVDN------GISSHAGVAHAHAL 150 (575)
T ss_pred CCEEEEEcC------CcCCHHHHHHHHHC
Confidence 678999994 89988887766665
No 59
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=28.90 E-value=1.1e+02 Score=30.13 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=43.1
Q ss_pred HHHHHHHHHc--------CCeEEEEeCCCC--------------CCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHH
Q psy2382 9 TKEIISELKI--------GNMIILVDSENR--------------ENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEK 66 (527)
Q Consensus 9 v~~ai~~lr~--------G~~Vvv~D~~~r--------------e~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~ 66 (527)
+++=+..+|. |+-|||+||.-- -.-..+++|.--+.++...-|...+.+++|+.+|..
T Consensus 106 l~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~ 185 (220)
T COG1926 106 LLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAP 185 (220)
T ss_pred HHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHHHHhhcCeEEEEcCCcc
Confidence 4444555554 566899996311 112478888888889999999999999999998876
Q ss_pred H
Q psy2382 67 H 67 (527)
Q Consensus 67 ~ 67 (527)
.
T Consensus 186 F 186 (220)
T COG1926 186 F 186 (220)
T ss_pred H
Confidence 3
No 60
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.47 E-value=66 Score=25.81 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHcCCeEEEEeC
Q psy2382 7 SSTKEIISELKIGNMIILVDS 27 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~D~ 27 (527)
.+++++..+|++|..|+|++.
T Consensus 37 qkv~~~r~qlq~GeaVivwse 57 (72)
T COG3089 37 QKVADVRRQLQSGEAVIVWSE 57 (72)
T ss_pred HHHHHHHHHHhcCceEEEecc
Confidence 368999999999999999985
No 61
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.84 E-value=50 Score=27.70 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHh
Q psy2382 464 IEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVAL 516 (527)
Q Consensus 464 ~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R 516 (527)
.-.++|.+|..+..|...-.....++|+|++|++-++...-.+....|-++.+
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 34567888888888865556668899999999999887555666655555543
No 62
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=24.21 E-value=68 Score=25.42 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 484 YKVIINEAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 484 ~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
+.-+|++|++.|... +..+.+++.+||++..+.
T Consensus 31 ~~~~v~~ai~~~~~~-~~~~~~Yi~~Il~~W~~~ 63 (77)
T PF07261_consen 31 SPEVVNEAIEYALEN-NKRSFNYIEKILNNWKQK 63 (77)
T ss_dssp HHHHHHHHHHHHHHC-T--SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc
Confidence 446899999999954 444689999999998765
No 63
>PLN02880 tyrosine decarboxylase
Probab=22.34 E-value=1.5e+02 Score=32.83 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHhCCCCcEEEEEEeC-CCCcCCChhHHHHHHHhcCCcE
Q psy2382 145 GHTEAGCDLTKLAGLTPSAVICEILN-DDGTMARLPDLIKFSKLHNIKI 192 (527)
Q Consensus 145 ghtEaav~L~rlAgl~Paavi~ei~~-~~g~~~~~~~~~~~A~~~~l~~ 192 (527)
.+=|.+++-.+.+|+.|.+|++..=. ..|...+.+++.++|++|++.+
T Consensus 224 ~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 224 ELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred HHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 34456676667789999999998765 3488889999999999999865
No 64
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=22.31 E-value=3.9e+02 Score=27.87 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=24.0
Q ss_pred ccCChhHH-HHHHHHHhCCCCcEEEEEEeCCCCc
Q psy2382 142 IRGGHTEA-GCDLTKLAGLTPSAVICEILNDDGT 174 (527)
Q Consensus 142 ~r~ghtEa-av~L~rlAgl~Paavi~ei~~~~g~ 174 (527)
+.+|..|| |--|.+|++|. +=+||-+..+.|+
T Consensus 169 EErGQ~eAIA~nL~em~~Lk-vPiI~iVIGEGgS 201 (317)
T COG0825 169 EERGQSEAIARNLREMARLK-VPIISIVIGEGGS 201 (317)
T ss_pred hhcccHHHHHHHHHHHhCCC-CCEEEEEecCCCc
Confidence 34477777 88899999985 6678888877653
No 65
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=21.34 E-value=96 Score=24.90 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=16.9
Q ss_pred cccccHHHHHHHHHcCCeEEEE
Q psy2382 4 KFISSTKEIISELKIGNMIILV 25 (527)
Q Consensus 4 ~~~~~v~~ai~~lr~G~~Vvv~ 25 (527)
..++.++++.++|++|++|++-
T Consensus 7 ~~~~D~~~i~~~l~~g~~Vivn 28 (73)
T PF04472_consen 7 KSFEDAREIVDALREGKIVIVN 28 (73)
T ss_dssp SSGGGHHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHHHHHcCCEEEEE
Confidence 3578899999999999999765
No 66
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=21.34 E-value=1.8e+02 Score=25.95 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=38.2
Q ss_pred CChhHHHHHHHHHhCCCCcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEe
Q psy2382 144 GGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKIGT 194 (527)
Q Consensus 144 ~ghtEaav~L~rlAgl~Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~ 194 (527)
-.|+..++..++..|+...+++....+++-.+ .......+++..++|++.
T Consensus 82 i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 82 INHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred HhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 36888999999999999999998877653222 224577888888888765
No 67
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=20.42 E-value=1.4e+02 Score=33.85 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=97.3
Q ss_pred cCChhHHHHHHHHHhCCCCcEEEEEEeCCCCc-----CCChhHHHHHHHhcCC-cEEehhcHHHHHHhchhh-hhhhccc
Q psy2382 143 RGGHTEAGCDLTKLAGLTPSAVICEILNDDGT-----MARLPDLIKFSKLHNI-KIGTISNLICYRYKYENI-IKRKAEY 215 (527)
Q Consensus 143 r~ghtEaav~L~rlAgl~Paavi~ei~~~~g~-----~~~~~~~~~~A~~~~l-~~v~~~dl~~~~~~~e~~-v~~~~~~ 215 (527)
|.--.|+|+.+|+.+|..-|+.+=-|++.||. |-.+=+. +|-. -.||.-||.+|..+..+- --...+.
T Consensus 252 R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQV-----EHPVTE~iTGiDLVewqiRVA~GekL~~~Q~ 326 (645)
T COG4770 252 REAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQV-----EHPVTELITGIDLVEWQIRVASGEKLPFTQD 326 (645)
T ss_pred HHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceec-----cccchhhhhhhHHHHHHHHHhcCCcCCcccc
Confidence 44457899999999999999999999999883 3222111 2322 246889999887542210 0012334
Q ss_pred cccCCcccEEEEEEeeCCCCcEEEEEEeccCC---CCCCccEEEcccCcchhhccCC-------CCCCCCCChhHHHHHH
Q psy2382 216 NINTLYGNFKIIVYIDKINNDIHLTLIYGSIN---PNKIIPIWLNQQLSIFDFLHAK-------TSSCTQNNISSIMKIM 285 (527)
Q Consensus 216 ~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~---~~~~~lvRvHsec~tgDvfgs~-------~cdc~~~~~~qL~~aL 285 (527)
.++...=.|....|-.. ...-+.-..|.+. +.+-+-||+-|.-..||..... .|-.| ..=+.|+
T Consensus 327 di~l~GhAiE~RiyAED--p~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G----~dR~eAl 400 (645)
T COG4770 327 DIPLNGHAIEARIYAED--PARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHG----ADREEAL 400 (645)
T ss_pred cccccceeEEEEEeccC--cccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcC----CCHHHHH
Confidence 45553335555555321 1111222334322 1111469999999999987654 36666 6666777
Q ss_pred HHHhccccccceeeecCCC-ccccHHHHHHhhhcCCccEEEEeece
Q psy2382 286 KLIKNGAQEKNILHISVPG-ALEIPLALKNIIQIKKFNVLIAIGVI 330 (527)
Q Consensus 286 ~~i~~~~~g~G~l~~~vpG-~le~p~~a~~l~~~~~~da~i~lG~v 330 (527)
+++.+ .= -.+++-| .--+|+...-+++..=..+-+.-|++
T Consensus 401 ~rl~~--AL---~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i 441 (645)
T COG4770 401 DRLRR--AL---AEFEVEGIATNIPFLRALMADPRFRGGDLDTGFI 441 (645)
T ss_pred HHHHH--HH---HhhEecCccccHHHHHHHhcCcccccCCCcceee
Confidence 77766 21 1233444 55567766655443322334445554
Done!