Query psy2382
Match_columns 527
No_of_seqs 489 out of 3213
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 23:36:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tks_A 3,4-dihydroxy-2-butanon 100.0 1.9E-74 6.4E-79 547.8 18.1 199 5-203 4-203 (204)
2 3mio_A DHBP synthase, 3,4-dihy 100.0 2.8E-74 9.6E-79 548.1 18.9 203 4-206 2-206 (206)
3 1k4i_A 3,4-dihydroxy-2-butanon 100.0 4.1E-74 1.4E-78 553.2 18.3 208 3-210 9-228 (233)
4 1snn_A DHBP synthase, 3,4-dihy 100.0 1E-72 3.5E-77 544.0 12.9 198 6-204 1-222 (227)
5 1g57_A DHBP synthase, 3,4-dihy 100.0 4.5E-71 1.5E-75 531.3 19.6 203 6-208 13-215 (217)
6 2bz1_A GTP cyclohydrolase II; 100.0 2E-35 6.9E-40 281.5 0.2 158 209-383 3-167 (196)
7 3d3b_A Protein NUSB, N utiliza 100.0 1.1E-31 3.8E-36 244.7 14.2 134 386-520 4-138 (141)
8 1tzv_A NUSB protein, N utiliza 100.0 2E-31 6.9E-36 243.3 12.3 137 387-525 2-141 (142)
9 3r2d_A Protein NUSB, N utiliza 100.0 1.2E-30 4E-35 240.1 12.6 137 388-524 3-141 (149)
10 1eyv_A NUSB protein, N-utilizi 100.0 7.6E-29 2.6E-33 229.6 11.4 134 385-518 5-142 (156)
11 2i0f_A 6,7-dimethyl-8-ribityll 100.0 1.1E-28 3.6E-33 226.8 12.2 116 279-404 29-149 (157)
12 3nq4_A 6,7-dimethyl-8-ribityll 100.0 1.5E-28 5.2E-33 225.1 13.1 115 280-404 30-148 (156)
13 1rvv_A Riboflavin synthase; tr 100.0 2.1E-28 7.1E-33 224.2 13.3 117 280-404 30-147 (154)
14 1hqk_A 6,7-dimethyl-8-ribityll 100.0 2.4E-28 8.1E-33 224.1 13.4 117 280-404 30-147 (154)
15 1c2y_A Protein (lumazine synth 100.0 4.2E-28 1.4E-32 222.4 14.0 116 279-404 30-147 (156)
16 1kz1_A 6,7-dimethyl-8-ribityll 100.0 4.2E-28 1.4E-32 222.9 13.6 116 281-404 36-154 (159)
17 1ejb_A Lumazine synthase; anal 99.9 9.3E-28 3.2E-32 222.7 13.6 120 280-404 34-160 (168)
18 1di0_A Lumazine synthase; tran 99.9 2.9E-27 1E-31 217.7 10.6 119 281-404 29-148 (158)
19 2obx_A DMRL synthase 1, 6,7-di 99.9 2.9E-27 9.9E-32 217.5 10.4 119 281-404 30-149 (157)
20 2c92_A 6,7-dimethyl-8-ribityll 99.9 8.4E-27 2.9E-31 214.7 13.1 114 279-404 34-150 (160)
21 1c41_A Lumazine synthase; ribo 99.9 1.6E-27 5.5E-32 224.8 0.0 103 293-403 47-187 (200)
22 2b99_A Riboflavin synthase; lu 99.9 6.5E-24 2.2E-28 194.1 10.7 111 281-405 18-131 (156)
23 1sqg_A SUN protein, FMU protei 99.8 1.1E-20 3.8E-25 201.2 12.6 124 391-518 5-129 (429)
24 2yxl_A PH0851 protein, 450AA l 99.8 1.2E-20 4.1E-25 202.3 12.6 130 385-517 5-140 (450)
25 1q8c_A Hypothetical protein Mg 84.4 11 0.00038 31.9 10.7 135 378-514 2-150 (151)
26 1y0n_A Hypothetical UPF0270 pr 39.7 23 0.00078 28.2 3.3 34 7-43 38-71 (78)
27 3p04_A Uncharacterized BCR; SE 27.5 39 0.0013 27.4 2.9 42 4-59 13-54 (87)
28 1hru_A YRDC gene product; prot 24.9 79 0.0027 28.9 4.9 63 4-72 5-72 (188)
29 3n2l_A OPRT, oprtase, orotate 22.9 1.5E+02 0.0051 28.3 6.6 67 140-206 151-220 (238)
30 1k7j_A Protein YCIO, protein T 22.1 1.5E+02 0.0052 27.4 6.4 61 6-72 14-79 (206)
31 4efz_A Metallo-beta-lactamase 20.1 5E+02 0.017 24.6 10.0 138 146-290 50-205 (298)
No 1
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=100.00 E-value=1.9e-74 Score=547.84 Aligned_cols=199 Identities=41% Similarity=0.737 Sum_probs=190.6
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
++++||+||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|++++|++|+||+|+..|++++
T Consensus 4 ~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~~~~L~Lp~mv~~n~~~~ 83 (204)
T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRH 83 (204)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------
T ss_pred chhhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHhCCCcEEEEcCHHHHhhCCCchhccccCCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+||||||+++|++|||||.||+.||+.|++|+++|+||++|||||||++++|||++|+|||||||||||||||.|++|
T Consensus 84 ~taFtVsVda~~g~tTGISA~DRa~Ti~~l~~~~~~p~df~rPGHvfPL~A~~gGvl~R~GHTEAavdLarLAGl~Pa~v 163 (204)
T 1tks_A 84 GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGV 163 (204)
T ss_dssp CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEE
T ss_pred CCCeEEEEeccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCcceeeecCCCCccCCCcHHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe-CCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHH
Q psy2382 165 ICEIL-NDDGTMARLPDLIKFSKLHNIKIGTISNLICYRY 203 (527)
Q Consensus 165 i~ei~-~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~ 203 (527)
||||+ ++||+|++.+++.+||++|+||+++|+||++||.
T Consensus 164 icEi~~~~dG~mar~~~l~~fA~~h~l~iiti~dLi~yr~ 203 (204)
T 1tks_A 164 ICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYIS 203 (204)
T ss_dssp EEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHC
T ss_pred EEEEeECCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHh
Confidence 99999 8999999999999999999999999999999985
No 2
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=100.00 E-value=2.8e-74 Score=548.10 Aligned_cols=203 Identities=41% Similarity=0.736 Sum_probs=188.9
Q ss_pred cccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCC
Q psy2382 4 KFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSS 83 (527)
Q Consensus 4 ~~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~ 83 (527)
+.+++|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|++++|++|+||+|++.|+++
T Consensus 2 ~~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~a~~L~Lp~mv~~n~~~ 81 (206)
T 3mio_A 2 TRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQDK 81 (206)
T ss_dssp CCCCCHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCSCCC------
T ss_pred CCchhHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCcccccCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcE
Q psy2382 84 FGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSA 163 (527)
Q Consensus 84 ~~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paa 163 (527)
++|+|||||||++|++|||||.||+.||++|++|+++|+||++|||||||++++|||++|+|||||||||||||||.|++
T Consensus 82 ~~taftvsvda~~g~tTGISA~DRa~Ti~~ladp~~~p~Df~rPGHvfPL~A~~gGvl~R~GhTEaavdLarlAGl~Pa~ 161 (206)
T 3mio_A 82 HGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAG 161 (206)
T ss_dssp -----CCCEEESSSCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTGGGTCCCHHHHHHHHHHHTTSCSBE
T ss_pred CCCCeEEEEecCCCCCCCcCHHHHHHHHHHHhCCCCCHHHhCCCCCceeEeeCCCCcccCCChHHHHHHHHHHcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEE--eCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhch
Q psy2382 164 VICEI--LNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYE 206 (527)
Q Consensus 164 vi~ei--~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e 206 (527)
||||| +++||+|++.+++.+||++|+||+++|+||++||.++|
T Consensus 162 vicEiv~~~~dG~mar~~~l~~fA~~h~l~~iti~dli~yr~~~e 206 (206)
T 3mio_A 162 AICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206 (206)
T ss_dssp EEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEEHHHHHHHHHHTC
T ss_pred EEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcC
Confidence 99999 99999999999999999999999999999999998764
No 3
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=100.00 E-value=4.1e-74 Score=553.19 Aligned_cols=208 Identities=38% Similarity=0.628 Sum_probs=201.5
Q ss_pred ccccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCC
Q psy2382 3 NKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNS 82 (527)
Q Consensus 3 ~~~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~ 82 (527)
.+.+++|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|++++|++|+||+|+..|++
T Consensus 9 ~~~~~~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~~~GliC~~lt~e~~~~L~Lp~Mv~~n~~ 88 (233)
T 1k4i_A 9 KSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNAD 88 (233)
T ss_dssp ---CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCC
T ss_pred CCchhHHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHcCCCCEEEEcCHHHHhhCCCcccccccCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEeEeccC-CCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCC
Q psy2382 83 SFGTNFTVSIEAAN-GVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTP 161 (527)
Q Consensus 83 ~~~~~f~vsvd~~~-g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~P 161 (527)
+++|+|||||||++ |++|||||.||+.||+.|++|+++|+||++|||||||++++|||++|+|||||||||||||||.|
T Consensus 89 ~~~TaFTVsVda~~~g~tTGISA~DRa~Tir~la~~~~~p~df~rPGHvfPL~A~~GGVl~R~GHTEAaVDLarLAGl~P 168 (233)
T 1k4i_A 89 PRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRP 168 (233)
T ss_dssp SSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTCCS
T ss_pred CCCCCeEEEEEcccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceeeecCCCeeccCChHHHHHHHHHHcCCCc
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCC-----------CCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhh
Q psy2382 162 SAVICEILND-----------DGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIK 210 (527)
Q Consensus 162 aavi~ei~~~-----------~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~ 210 (527)
++|||||+++ ||+|||++++.+||++|+||+++|+||++||.++|++|+
T Consensus 169 agVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iitI~dLi~yr~~~e~~v~ 228 (233)
T 1k4i_A 169 VAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE 228 (233)
T ss_dssp BEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHCCC-
T ss_pred eEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcCCeec
Confidence 9999999999 999999999999999999999999999999999998763
No 4
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=100.00 E-value=1e-72 Score=543.96 Aligned_cols=198 Identities=32% Similarity=0.524 Sum_probs=190.3
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCC---
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNS--- 82 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~--- 82 (527)
+++|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|+||++|++++|++|+||+|++.|++
T Consensus 1 ~~~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~~~GliC~~l~~e~~~~L~Lp~Mv~~n~~~~~ 80 (227)
T 1snn_A 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQ 80 (227)
T ss_dssp -CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTT
T ss_pred CchHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHcCCCcEEEEcCHHHHhhCCChhhhhhhccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred -------------C--CCCceeEeEeccCCCCCCCChhhhHHHHHHHhc------CCCCCCCccCCCCCcccccccCCcc
Q psy2382 83 -------------S--FGTNFTVSIEAANGVTTGISASDRAHTIKVASS------KKAKPSDIVQPGHIFPLQAKKGGVL 141 (527)
Q Consensus 83 -------------~--~~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~------~~~~~~d~~~PGhv~pl~a~~ggv~ 141 (527)
+ ++|+|||||||++ ++|||||.|||.||++|++ |+++|+||++|||||||++++|||+
T Consensus 81 ~~~~~~~l~~~~~~Y~~~TaFtvsVd~~~-~tTGISA~DRa~Tir~la~~~~~~~~~~~~~df~rPGHVfPL~A~~gGVl 159 (227)
T 1snn_A 81 KFKVLRELYPNDIPYDEKSSFSITINHRK-TFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVK 159 (227)
T ss_dssp TCHHHHHTCCTTCTTSSSCCEEEEEEETT-CSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGG
T ss_pred cccccccccccccccCCCCCcEEEEEcCC-CCCCCCHHHHHHHHHHHHhhhcccCCCCCHHHcCCCCCceeEEeCCCCEe
Confidence 3 7899999999985 9999999999999999999 9999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhCCCCcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHh
Q psy2382 142 IRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYK 204 (527)
Q Consensus 142 ~r~ghtEaav~L~rlAgl~Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~ 204 (527)
+|+|||||||||||||||.|++|||||+++||+|++++++.+||++|+||+++|+||++||.+
T Consensus 160 ~R~GHTEaaVdLarlAGl~Pa~VicEi~~ddG~mar~~~l~~fA~~h~l~~iti~dLi~yr~~ 222 (227)
T 1snn_A 160 NRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLD 222 (227)
T ss_dssp TCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC--
T ss_pred eCCCchHHHHHHHHHcCCCceEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 5
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=100.00 E-value=4.5e-71 Score=531.26 Aligned_cols=203 Identities=46% Similarity=0.811 Sum_probs=194.6
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCCC
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSFG 85 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~~ 85 (527)
+++|++||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++||++||++|+||+|+..|+++++
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~~~~~GliCl~lt~~ra~~L~Lp~mv~~n~~~~~ 92 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYG 92 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCCTTC
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCccccccCCCcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEEE
Q psy2382 86 TNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVI 165 (527)
Q Consensus 86 ~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paavi 165 (527)
|+||||||+++|++|||||.||+.||+.|++|+++|+||.+|||||||++++|||++|+|||||||||||||||.||+||
T Consensus 93 taftVsvda~~g~tTGISa~DRa~Ti~~lad~~~~~~Df~~PGHvfPL~A~~gGvl~R~GhTEAavdLarLAGl~Pa~vi 172 (217)
T 1g57_A 93 TGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVL 172 (217)
T ss_dssp CCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSCEEE
T ss_pred CceEEeeccccCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCccceeecCCCcccCCCcHHHHHHHHHHcCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhh
Q psy2382 166 CEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENI 208 (527)
Q Consensus 166 ~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~ 208 (527)
|||+++||+|++.+++.+||++|+||+++|+||++||.++|+.
T Consensus 173 cEi~~~dG~mar~~~l~~fA~~h~l~~iti~dLi~yr~~~e~~ 215 (217)
T 1g57_A 173 CELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERK 215 (217)
T ss_dssp EEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC--
T ss_pred EEEeCCCCCccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999988753
No 6
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A
Probab=100.00 E-value=2e-35 Score=281.47 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=146.3
Q ss_pred hhhhccccccCCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHH
Q psy2382 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLI 288 (527)
Q Consensus 209 v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i 288 (527)
|++++++++||.||+|++++|++..++.||+|||+|++++++||||||||+|+|||+|||.+|||+ |||+.||++|
T Consensus 3 V~~v~~~~lpT~~G~f~~~~y~~~~~~~eH~ALv~G~i~~~~~vLVRvHsec~tgDvfgs~rcdcg----~qL~~Al~~I 78 (196)
T 2bz1_A 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCG----FQLEAALTQI 78 (196)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEETTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHH----HHHHHHHHHH
T ss_pred eEEEEEEEecCCCeeEEEEEEEECCCCcEEEEEEeCCCCCCCccEEEEeccCChHHHhCCCCCCCh----HHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hccccccc---eeeecCCC-ccccHHHHHHhhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCce
Q psy2382 289 KNGAQEKN---ILHISVPG-ALEIPLALKNIIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPII 361 (527)
Q Consensus 289 ~~~~~g~G---~l~~~vpG-~le~p~~a~~l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~ 361 (527)
++ +|+| |+.++++| ++.+++.+|.||++ ++++|+..||+.. +.+.|.+.|+.+. .|+.++.|.||||
T Consensus 79 ~~--~G~GVlvyLrqegrgigL~~kl~ay~lqd~g~dt~~an~~lg~~~--d~R~ygigAqIL~dLGV~~irLLTnnp-- 152 (196)
T 2bz1_A 79 AE--EGRGILLYHRQEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA--DERDFTLCADMFKLLGVNEVRLLTNNP-- 152 (196)
T ss_dssp HH--HTSEEEEEECCHHHHTCHHHHHHHHHHHHTTCCHHHHHHHTTCCS--CCCCTHHHHHHHHHTTCCSEEEECSCH--
T ss_pred HH--hCCEEEEEECCCCcchhHHHHHHHHhhhccCCcccccccccCCCC--ccccHHHHHHHHHHcCCCcEEccCCCC--
Confidence 99 9989 77788888 89999999999876 4788999999865 7888998888885 6999999999999
Q ss_pred eeecccCcHHHHHHhhhhhhhc
Q psy2382 362 NAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 362 ~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
.+..+++..|+++-+
T Consensus 153 -------~K~~~L~g~GleVve 167 (196)
T 2bz1_A 153 -------KKVEILTEAGINIVE 167 (196)
T ss_dssp -------HHHHHHHHTTCCEEE
T ss_pred -------ccccccccCCeEEEE
Confidence 588999999999765
No 7
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=99.97 E-value=1.1e-31 Score=244.68 Aligned_cols=134 Identities=40% Similarity=0.611 Sum_probs=121.8
Q ss_pred cCCcchHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHH
Q psy2382 386 NKTPRHRAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSI 464 (527)
Q Consensus 386 ~~~~r~~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~ 464 (527)
++++|+++|+.|+|+||+++.++.+.+. +.+++.. ..+++.|++|+++|++||++|+.+||++|+++++|++++++++
T Consensus 4 ~~~~R~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l~~~l~rl~~~ 82 (141)
T 3d3b_A 4 EPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQV 82 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-SCCTTSCHHHHHHHHHHHHHTHHHHHHHHGGGGTTCSSCCCHH
T ss_pred CcchHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHcCHH
Confidence 4678999999999999999988877665 4444543 4577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcccc
Q psy2382 465 EYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIRN 520 (527)
Q Consensus 465 ~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~~ 520 (527)
+++|||+|+|||+|++++|++++|||||+|||+|+++++++|||||||++.|+.++
T Consensus 83 ~r~iLrla~yEll~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~ 138 (141)
T 3d3b_A 83 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRP 138 (141)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhh
Confidence 99999999999999888999999999999999999999999999999999998765
No 8
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=99.97 E-value=2e-31 Score=243.26 Aligned_cols=137 Identities=31% Similarity=0.448 Sum_probs=123.9
Q ss_pred CCcchHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCH
Q psy2382 387 KTPRHRAREFALQGIYQWLFNNM-DVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSS 463 (527)
Q Consensus 387 ~~~r~~aRe~A~q~Ly~v~~~~~-~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~ 463 (527)
+|+|+++|+.|+|+||+++.++. +++. +.++++ ..+++.|++|+++|++||++|+..||++|++++ +|+++++++
T Consensus 2 ~~~r~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~--~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l~~w~l~rl~~ 79 (142)
T 1tzv_A 2 KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILD--ETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWSLNRLSV 79 (142)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSSSCGGGSCH
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHCCH
Confidence 48899999999999999999888 7775 344433 357889999999999999999999999999975 689999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhccccccccC
Q psy2382 464 IEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIRNIKFKK 525 (527)
Q Consensus 464 ~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~~~e~~~ 525 (527)
++++|||+|+|||+|++++|++++|||||++||+|+++++++|||||||++.|+.+..|...
T Consensus 80 ~~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~~~~~~~ 141 (142)
T 1tzv_A 80 VDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEKFE 141 (142)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhccccccC
Confidence 99999999999999988899999999999999999999999999999999999988877654
No 9
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=99.97 E-value=1.2e-30 Score=240.08 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=118.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCCCCHHH
Q psy2382 388 TPRHRAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINELSSIE 465 (527)
Q Consensus 388 ~~r~~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~rl~~~~ 465 (527)
.+|+++|+.|+|+||+++.++.++++ +.+++.....+++.|++|+++|++||++|+..||++|++++ +|+++|+++++
T Consensus 3 ~~R~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~~~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l~~w~~~rl~~~~ 82 (149)
T 3r2d_A 3 RYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLKGWSIDRLGYVE 82 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC---CGGGSCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCccccCHHH
Confidence 46899999999999999999988885 45555442227889999999999999999999999999976 69999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcccccccc
Q psy2382 466 YVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNIRNIKFK 524 (527)
Q Consensus 466 r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~~~~e~~ 524 (527)
++|||+|+|||+|++++|++++|||||++||+|+++++++|||||||++.|+.++.|.+
T Consensus 83 r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~ 141 (149)
T 3r2d_A 83 RNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKE 141 (149)
T ss_dssp HHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCCCCccccchHHhhHHHHhhcccccc
Confidence 99999999999999899999999999999999999999999999999999998877654
No 10
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=99.95 E-value=7.6e-29 Score=229.64 Aligned_cols=134 Identities=21% Similarity=0.309 Sum_probs=111.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHhCCCCHHHH-HHHHH--HhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhc-CCCCCC
Q psy2382 385 KNKTPRHRAREFALQGIYQWLFNNMDVNLI-ETYIK--EISNFYKVDKKYFYLILRGVINDINFLRYDLSLII-DRSINE 460 (527)
Q Consensus 385 ~~~~~r~~aRe~A~q~Ly~v~~~~~~~~~l-~~~~~--~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~-~~~l~r 460 (527)
.+.++|+++|+.|+|+||+++.++.+.+.+ ..... ......+.+++|+++|++||++|+..||++|++++ +|+++|
T Consensus 5 ~~~~~R~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l~~~d~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~l~~w~l~r 84 (156)
T 1eyv_A 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRGWTLDR 84 (156)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTSTTCCGGG
T ss_pred CCccchHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChhh
Confidence 346789999999999999999988777653 32221 11112234589999999999999999999999976 699999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 461 LSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 461 l~~~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
+++++++|||+|+|||+|++++|++++|||||+|||+|+++++++|||||||++.|+.
T Consensus 85 l~~~~r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r~~ 142 (156)
T 1eyv_A 85 LPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVT 142 (156)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCCCccccchHHHHHHHHHhH
Confidence 9999999999999999998889999999999999999999999999999999998763
No 11
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=99.95 E-value=1.1e-28 Score=226.83 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhccccccceeeecCCCccccHHHHHHhhhc-----CCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHh
Q psy2382 279 SSIMKIMKLIKNGAQEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELIANETISNIMQIS 353 (527)
Q Consensus 279 ~qL~~aL~~i~~~~~g~G~l~~~vpG~le~p~~a~~l~~~-----~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~ 353 (527)
.-|+.|++.+.+ .|..|.+.+|||+||+|+.+++|.++ ++|||+|+|||||||+|+||||||+++++|||+++
T Consensus 29 ~Ll~gA~~~l~~--~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~vs 106 (157)
T 2i0f_A 29 ALLDGAKAALDE--AGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTDLS 106 (157)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHH
Confidence 447888888888 66678889999999999999999988 89999999999999999999999999999999999
Q ss_pred hhhCCCceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 354 IKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 354 l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
|++++||+||||||+|++||++|+|.+.+ .+.+++|..+|--+
T Consensus 107 l~~~vPV~~GVLT~~~~eQA~~Rag~~~~--------nkG~eaA~aAlem~ 149 (157)
T 2i0f_A 107 VEESIAIGNGILTVENEEQAWVHARREDK--------DKGGFAARAALTMI 149 (157)
T ss_dssp HHTTCCEEEEEEEESSHHHHHHHHCTTTT--------CHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEEeCCCCHHHHHHHhCcccc--------ccHHHHHHHHHHHH
Confidence 99999999999999999999999998766 36777776665443
No 12
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=99.95 E-value=1.5e-28 Score=225.14 Aligned_cols=115 Identities=31% Similarity=0.490 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccccc----cceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhh
Q psy2382 280 SIMKIMKLIKNGAQE----KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIK 355 (527)
Q Consensus 280 qL~~aL~~i~~~~~g----~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~ 355 (527)
-|+.+++.+.+ .| ..+.+.+|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|+
T Consensus 30 Ll~gA~~~l~~--~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~L~ 107 (156)
T 3nq4_A 30 LLDGAVDALTR--IGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQD 107 (156)
T ss_dssp HHHHHHHHHHH--TTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 36666666665 44 4688899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 356 NNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 356 ~~~Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
+++||+||||||+|++||++|+|.+.| .+.+++|..+|--+
T Consensus 108 ~~vPV~~GVLT~~~~eQA~~Rag~~~~--------nKG~eaA~aalem~ 148 (156)
T 3nq4_A 108 SGVPVAFGVLTTESIEQAIERAGTKAG--------NKGAEAALTALEMI 148 (156)
T ss_dssp HCCCEEEEEEEESCHHHHHHHBTSTTC--------BHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCHHHHHHHhCCccc--------ccHHHHHHHHHHHH
Confidence 999999999999999999999999877 37788877766544
No 13
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=99.95 E-value=2.1e-28 Score=224.22 Aligned_cols=117 Identities=32% Similarity=0.486 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCC
Q psy2382 280 SIMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 358 (527)
Q Consensus 280 qL~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~ 358 (527)
-|+.|++.+.+. ++...+.+.+|||+||+|+++++|.++++|||+|+|||||||+|+||||||+++++|||+++|++++
T Consensus 30 Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~Gl~~v~l~~~v 109 (154)
T 1rvv_A 30 LLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGV 109 (154)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhhCC
Confidence 366676766651 0224578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 359 PIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 359 Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
||+||||||+|++||++|+|.+.+ .+.++.|..++--+
T Consensus 110 PV~~GVLT~~~~eQA~~Rag~~~~--------nkG~eaA~aalem~ 147 (154)
T 1rvv_A 110 PVIFGIVTTENIEQAIERAGTKAG--------NKGVDCAVSAIEMA 147 (154)
T ss_dssp CEEEEEEEESSHHHHHHTEEETTE--------EHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHhccccc--------chHHHHHHHHHHHH
Confidence 999999999999999999998766 36788877766544
No 14
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=99.95 E-value=2.4e-28 Score=224.05 Aligned_cols=117 Identities=33% Similarity=0.485 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCC
Q psy2382 280 SIMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 358 (527)
Q Consensus 280 qL~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~ 358 (527)
-|+.|++.+.+. +....+.+.+|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|++++
T Consensus 30 Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd~Va~~vs~gl~~v~l~~~v 109 (154)
T 1hqk_A 30 LVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRK 109 (154)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhcCC
Confidence 366676666651 1224578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 359 PIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 359 Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
||+|||||++|++||++|+|.+.+ .+.++.|..++--+
T Consensus 110 PV~~GVLT~~~~eQA~~Rag~~~~--------nkG~eaA~aalem~ 147 (154)
T 1hqk_A 110 PITFGVITADTLEQAIERAGTKHG--------NKGWEAALSAIEMA 147 (154)
T ss_dssp CEEEEEEEESSHHHHHHHEEETTE--------EHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHhccccc--------chHHHHHHHHHHHH
Confidence 999999999999999999998766 36888877766544
No 15
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=99.95 E-value=4.2e-28 Score=222.45 Aligned_cols=116 Identities=22% Similarity=0.416 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhccccc--cceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhh
Q psy2382 279 SSIMKIMKLIKNGAQE--KNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKN 356 (527)
Q Consensus 279 ~qL~~aL~~i~~~~~g--~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~ 356 (527)
.-|+.+++.+.+ .| ..+.+.+|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|++
T Consensus 30 ~Ll~ga~~~l~~--~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~v~L~~ 107 (156)
T 1c2y_A 30 RLMEGALDTFKK--YSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNS 107 (156)
T ss_dssp HHHHHHHHHHHH--TTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHHHHHHHhhc
Confidence 346777777766 44 46788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 357 NIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 357 ~~Pv~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
++||+||||||+|++||++|+|.+.+ .+.+++|..+|--+
T Consensus 108 ~vPV~~GVLT~~~~eQA~~Rag~~~~--------nKG~eaA~aAlem~ 147 (156)
T 1c2y_A 108 GVPCVFGVLTCDNMDQAINRAGGKAG--------NKGAESALTAIEMA 147 (156)
T ss_dssp TSCEEEEEECCSSHHHHHHHEEETTE--------EHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCHHHHHHHcCCccc--------chHHHHHHHHHHHH
Confidence 99999999999999999999998766 36777776666443
No 16
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=99.95 E-value=4.2e-28 Score=222.90 Aligned_cols=116 Identities=25% Similarity=0.439 Sum_probs=98.9
Q ss_pred HHHHHHHHhc--cccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCC
Q psy2382 281 IMKIMKLIKN--GAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 358 (527)
Q Consensus 281 L~~aL~~i~~--~~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~ 358 (527)
|+.+++.+.+ ++....+.+.+|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|++++
T Consensus 36 l~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~L~~~v 115 (159)
T 1kz1_A 36 VKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGV 115 (159)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHHHHHHHhhcCC
Confidence 5555555543 12445688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccCcHHHHHHhhh-hhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 359 PIINAILTTETIEQANSRIL-TKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 359 Pv~~gvlt~~~~~qa~~r~g-~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
||+||||||+|++||++|+| .+.+ .+.+++|..+|--+
T Consensus 116 PV~~GVLT~~~~eQA~~Rag~~~~~--------nKG~eaA~aalem~ 154 (159)
T 1kz1_A 116 PVILGLLTVLNEEQALYRAGLNGGH--------NHGNDWGSAAVEMG 154 (159)
T ss_dssp CEEEEEEEESSHHHHHHHBTCTTCC--------BHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHhCCcccc--------chHHHHHHHHHHHH
Confidence 99999999999999999999 5533 25777776666443
No 17
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=99.95 E-value=9.3e-28 Score=222.69 Aligned_cols=120 Identities=28% Similarity=0.453 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhh-----cCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHh
Q psy2382 280 SIMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQ-----IKKFNVLIAIGVIIRGETYHFELIANETISNIMQIS 353 (527)
Q Consensus 280 qL~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~-----~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~ 353 (527)
-|+.|++.+.++ +....|.+.+|||+||+|+++++|.+ +++|||+|+|||||||+|+||||||+++++|||+++
T Consensus 34 Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~vs 113 (168)
T 1ejb_A 34 LVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQ 113 (168)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEecccccCCchHHHHHHHHHHHHHHHHH
Confidence 366677766651 12245888999999999999999987 678999999999999999999999999999999999
Q ss_pred hhhCCCceeeecccCcHHHHHHhhhhhhh-ccccCCcchHHHHHHHHHHHHH
Q psy2382 354 IKNNIPIINAILTTETIEQANSRILTKVN-LIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 354 l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~-~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
|++++||+|||||++|++||++|+|.+.| +. -.+.++.|..+|.-+
T Consensus 114 L~~~vPV~~GVLT~~~~eQA~~Rag~~~~~~~-----~nkG~eaA~aAlem~ 160 (168)
T 1ejb_A 114 EKVDMPVIFGLLTCMTEEQALARAGIDEAHSM-----HNHGEDWGAAAVEMA 160 (168)
T ss_dssp HHHTSCBCCEEEEESSHHHHHHHBTCSTTCCS-----CBHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEEecCCCHHHHHHhcCccccccc-----cchHHHHHHHHHHHH
Confidence 99999999999999999999999998553 10 135777777776554
No 18
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=99.94 E-value=2.9e-27 Score=217.70 Aligned_cols=119 Identities=18% Similarity=0.338 Sum_probs=98.6
Q ss_pred HHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCCC
Q psy2382 281 IMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 359 (527)
Q Consensus 281 L~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~P 359 (527)
|+.|++.+.+. +....+.+.+|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|++++|
T Consensus 29 l~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vP 108 (158)
T 1di0_A 29 RKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVP 108 (158)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Confidence 55666666551 02335788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 360 IINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 360 v~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
|+|||||++|.+||++|++.+.++ .-.+.++.|..+|--+
T Consensus 109 V~~GVLT~~~~eqA~er~~~~~~~-----~~nKG~eaA~aal~m~ 148 (158)
T 1di0_A 109 VLSVVLTPHHFHESKEHHDFFHAH-----FKVKGVEAAHAALQIV 148 (158)
T ss_dssp EEEEEECBSSCCCSHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHhhhhcch-----hcchHHHHHHHHHHHH
Confidence 999999999999999999543321 0036777777666543
No 19
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=99.94 E-value=2.9e-27 Score=217.50 Aligned_cols=119 Identities=17% Similarity=0.337 Sum_probs=98.6
Q ss_pred HHHHHHHHhcc-ccccceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCCC
Q psy2382 281 IMKIMKLIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIP 359 (527)
Q Consensus 281 L~~aL~~i~~~-~~g~G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~P 359 (527)
|+.|++.+.+. +....+.+.+|||+||+|+.+++|.++++|||+|+|||||||+|+||||||+++++|||+++|++++|
T Consensus 30 l~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vP 109 (157)
T 2obx_A 30 VSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVP 109 (157)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhcCCC
Confidence 55666666551 02335788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccCcHHHHHHhhhhhhhccccCCcchHHHHHHHHHHHHH
Q psy2382 360 IINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 360 v~~gvlt~~~~~qa~~r~g~~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
|+||||||+|.+||++|++.+.++ .-.+.++.|..+|--+
T Consensus 110 V~~GVLT~~~~eqa~eR~~~~~~~-----~~nKG~eaA~aalem~ 149 (157)
T 2obx_A 110 VLSAVLTPHNYHDSAEHHRFFFEH-----FTVKGKEAARACVEIL 149 (157)
T ss_dssp EEEEEECBSCCCSCHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHhhhhcch-----hcchHHHHHHHHHHHH
Confidence 999999999999999999543310 0036777777766544
No 20
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=99.94 E-value=8.4e-27 Score=214.67 Aligned_cols=114 Identities=25% Similarity=0.414 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhcccccc-ceeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhC
Q psy2382 279 SSIMKIMKLIKNGAQEK-NILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNN 357 (527)
Q Consensus 279 ~qL~~aL~~i~~~~~g~-G~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~ 357 (527)
.-|+.|++.+.+ .|. .+.+.+|||+||+|+.+++|.+ +|||+|+|||||||+|+||||||+++++|||+++|+++
T Consensus 34 ~Ll~gA~~~l~~--~G~~~i~v~~VPGafEiP~aak~la~--~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~ 109 (160)
T 2c92_A 34 ALLDGARKVAAG--CGLDDPTVVRVLGAIEIPVVAQELAR--NHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSS 109 (160)
T ss_dssp HHHHHHHHHHHH--TTCSCCEEEEESSGGGHHHHHHHHHT--SCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--cCCCceEEEECCcHHHHHHHHHHHHh--cCCEEEEEeeeecCCchHHHHHHHHHHHHHHHHHhhcC
Confidence 347777777776 443 5778899999999999999986 59999999999999999999999999999999999999
Q ss_pred CCceeeecccCcHHHHHHhhhh--hhhccccCCcchHHHHHHHHHHHHH
Q psy2382 358 IPIINAILTTETIEQANSRILT--KVNLIKNKTPRHRAREFALQGIYQW 404 (527)
Q Consensus 358 ~Pv~~gvlt~~~~~qa~~r~g~--~~~~~~~~~~r~~aRe~A~q~Ly~v 404 (527)
+||+|||||++|++||++|+|. +.+ .+.++.|..++--+
T Consensus 110 vPV~~GVLT~~~~eQA~~Rag~~~~~~--------nKG~eaA~aalem~ 150 (160)
T 2c92_A 110 TPIANGVLTTNTEEQALDRAGLPTSAE--------DKGAQATVAALATA 150 (160)
T ss_dssp CCEEEEEEEESSHHHHHTTBTCTTCSC--------BHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHhccccccc--------hhHHHHHHHHHHHH
Confidence 9999999999999999999986 344 25777777666543
No 21
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Probab=99.88 E-value=1.6e-27 Score=224.77 Aligned_cols=103 Identities=35% Similarity=0.621 Sum_probs=90.5
Q ss_pred cccceeeecCCCccccHHHHHHhhh------------------------------------cCCccEEEEeeceeeCCCc
Q psy2382 293 QEKNILHISVPGALEIPLALKNIIQ------------------------------------IKKFNVLIAIGVIIRGETY 336 (527)
Q Consensus 293 ~g~G~l~~~vpG~le~p~~a~~l~~------------------------------------~~~~da~i~lG~vi~g~t~ 336 (527)
+..+|.+++|||+||+|+++++|.+ .++|||||+|||||||+|+
T Consensus 47 ~~~~I~v~~VPGa~ElP~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DAVIaLG~VIrGeT~ 126 (200)
T 1c41_A 47 KESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETM 126 (200)
Confidence 3356888999999999999999986 4689999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhCCCceeeecccCcHHHHHHhhhh--hhhccccCCcchHHHHHHHHHHHH
Q psy2382 337 HFELIANETISNIMQISIKNNIPIINAILTTETIEQANSRILT--KVNLIKNKTPRHRAREFALQGIYQ 403 (527)
Q Consensus 337 h~~~v~~~~~~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~--~~~~~~~~~~r~~aRe~A~q~Ly~ 403 (527)
||||||+++++|||+++|++++||+|||||++|+|||++|+|. +.+ .+.+++|..++..
T Consensus 127 HfeyVa~~vs~GLm~v~L~~~vPVifGVLT~~t~eQA~~RAg~~~k~~--------NkG~eaA~aAvem 187 (200)
T 1c41_A 127 HFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSH--------NHGEDWGLAAVEM 187 (200)
Confidence 9999999999999999999999999999999999999999997 433 2466666655544
No 22
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=99.90 E-value=6.5e-24 Score=194.09 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=97.2
Q ss_pred HHHHHHHHhccccccc--eeeecCCCccccHHHHHHhhhcCCccEEEEeeceeeCCCchhHHHHHHHHHHHHHHhhhhCC
Q psy2382 281 IMKIMKLIKNGAQEKN--ILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNI 358 (527)
Q Consensus 281 L~~aL~~i~~~~~g~G--~l~~~vpG~le~p~~a~~l~~~~~~da~i~lG~vi~g~t~h~~~v~~~~~~gl~~~~l~~~~ 358 (527)
|+.|++.+.+ .|.. +.+.+|||+||+|+.+++|.++++|||+|+|||| |+|+||||||+++++|||+++|+|++
T Consensus 18 l~gA~~~L~~--~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~V--G~T~Hfd~Va~~vs~Gl~~v~L~~~v 93 (156)
T 2b99_A 18 ASIAIKKLKE--LSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMP--GKAEKDKVCAHEASLGLMLAQLMTNK 93 (156)
T ss_dssp HHHHHHHHHH--HCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECC--CSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--cCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc--CCcchhHHHHHHHHHHHHHHHhhhCC
Confidence 5666666655 3322 5558899999999999999999999999999999 99999999999999999999999999
Q ss_pred CceeeecccCcHHHHHHhh-hhhhhccccCCcchHHHHHHHHHHHHHH
Q psy2382 359 PIINAILTTETIEQANSRI-LTKVNLIKNKTPRHRAREFALQGIYQWL 405 (527)
Q Consensus 359 Pv~~gvlt~~~~~qa~~r~-g~~~~~~~~~~~r~~aRe~A~q~Ly~v~ 405 (527)
||+|| |++|.|||++|+ |.+.+ .+.++.|..++.-+.
T Consensus 94 PV~~g--t~~~~eqa~~r~~g~k~~--------nKG~EaA~aaiem~~ 131 (156)
T 2b99_A 94 HIIEV--FVHEDEAKDDKELDWLAK--------RRAEEHAENVYYLLF 131 (156)
T ss_dssp CEEEE--ECCGGGSSSHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CEEEE--eCCCHHHHHHHhhcchhh--------hhHHHHHHHHHHHHH
Confidence 99999 999999999999 77777 478999988876653
No 23
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.83 E-value=1.1e-20 Score=201.23 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q psy2382 391 HRAREFALQGIYQWLFNNMDVNLI-ETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDLSLIIDRSINELSSIEYVVL 469 (527)
Q Consensus 391 ~~aRe~A~q~Ly~v~~~~~~~~~l-~~~~~~~~~~~~~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~~~~r~IL 469 (527)
+++|+.|+++||+++.++.+.+.+ .+.. ..+++.|++|+++|++||+||+..||++|+++++++++++++++++||
T Consensus 5 ~~aR~~A~~~L~~~~~~~~~~~~~l~~~~---~~~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~~~~~~~~~~~~~iL 81 (429)
T 1sqg_A 5 RNLRSMAAQAVEQVVEQGQSLSNILPPLQ---QKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLI 81 (429)
T ss_dssp CCHHHHHHHHHHHHHHHCCCHHHHHHHHH---TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHH---hhCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhcCHHHHHHH
Confidence 469999999999999988777754 3322 357889999999999999999999999999998889999999999999
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHHHhcc
Q psy2382 470 LIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKVALNI 518 (527)
Q Consensus 470 Rla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i~R~~ 518 (527)
|+|+|||+|+ ++|++++|||+|++||+|+.+++++|||||||++.|+.
T Consensus 82 rl~~yel~~~-~~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~ 129 (429)
T 1sqg_A 82 MVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQ 129 (429)
T ss_dssp HHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhh
Confidence 9999999998 79999999999999999999889999999999999864
No 24
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.83 E-value=1.2e-20 Score=202.30 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=117.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHhcCCCh-hhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCC
Q psy2382 385 KNKTPRHRAREFALQGIYQWLFNNMDVNL-IETYIKEISNFYK-VDKKYFYLILRGVINDINFLRYDLSLIIDRSINELS 462 (527)
Q Consensus 385 ~~~~~r~~aRe~A~q~Ly~v~~~~~~~~~-l~~~~~~~~~~~~-~d~~~~~~Lv~gvlr~~~~LD~~I~~~~~~~l~rl~ 462 (527)
.+.++++++|+.|+++||+++.++.+.+. +.++++. ..+++ .|++|+++|++||+||+..||++|++++++++++++
T Consensus 5 ~~~~~~~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~-~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~~~~~~~~ 83 (450)
T 2yxl_A 5 KKKLSIPPKGIRAIIEAIRLGEIIKPSQYAKREAFKK-HDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKEIVGVTPLILD 83 (450)
T ss_dssp -CCBCCCHHHHHHHHHHHHHTTTSSSTHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGSC
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCChhhcC
Confidence 35677889999999999999988877765 5666654 35777 999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhhHH----HHHHHHHhcCCCCCcCchhHHHHHHHhc
Q psy2382 463 SIEYVVLLIGTYELKSHYKIPYKVIIN----EAIELVKSFGNIDGYKYVNKILDKVALN 517 (527)
Q Consensus 463 ~~~r~ILRla~yELl~~~~iP~~avIn----EaVeLAK~~~~~~s~~FVNaVLr~i~R~ 517 (527)
+++++|||+|+|||+| ++|++++|| |||++||+|+.+++++|||||||++.|+
T Consensus 84 ~~~~~iLrla~yell~--~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~ 140 (450)
T 2yxl_A 84 PWLRAALRVAVDIALF--HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEY 140 (450)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc--CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhc
Confidence 9999999999999999 699999999 9999999999888899999999999986
No 25
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=84.36 E-value=11 Score=31.94 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=79.8
Q ss_pred hhhhhccccCCcchHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHhHHHHHHHHHh--h
Q psy2382 378 LTKVNLIKNKTPRHRAREFALQGIYQWLFN-NMDVNLIETYIKEISNFYKVD-KKYFYLILRGVINDINFLRYDLSL--I 453 (527)
Q Consensus 378 g~~~~~~~~~~~r~~aRe~A~q~Ly~v~~~-~~~~~~l~~~~~~~~~~~~~d-~~~~~~Lv~gvlr~~~~LD~~I~~--~ 453 (527)
|+.+.+..++.+|...|.+.+..+|+..+- ....+.+...+-+. +..++. .++-..+|...-++.-+....|+. .
T Consensus 2 ~~~v~g~t~kltrtqrriaivefif~~lfflpk~a~~iqa~fl~y-d~~er~ln~wqk~ivk~fse~~~~f~~~ie~qq~ 80 (151)
T 1q8c_A 2 AITVKGLTNKLTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEY-DTKERQLNEWQKLIVKAFSENIFSFQKKIEEQQL 80 (151)
T ss_dssp ----------CCHHHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHT-CCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecchhhhhHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhc-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888999999999999997653 34444443333222 111111 234455666666666555555542 1
Q ss_pred c----------CCCCCCCCHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHhcCCCCCcCchhHHHHHH
Q psy2382 454 I----------DRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKILDKV 514 (527)
Q Consensus 454 ~----------~~~l~rl~~~~r~ILRla~yELl~~~~iP~~avInEaVeLAK~~~~~~s~~FVNaVLr~i 514 (527)
. +.+=++++....++...++.|-.- ..+.....|+||.-+-..|+....++=-+|.|+++
T Consensus 81 ~nq~eiq~kynkisgkkidllt~avilcalseq~a-~~tdkplliseallimdhysq~~ekkqthalldkl 150 (151)
T 1q8c_A 81 KNQLEIQTKYNKISGKKIDLLTTAVVLCALSEQKA-HNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 150 (151)
T ss_dssp HCCCSCCCC--------CCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHhhHHHh-hcCCCchhHHHHHHHHHHhhhchhHHHHHHHHHhh
Confidence 1 112234566777888888888765 36788899999999999999877777778888764
No 26
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=39.68 E-value=23 Score=28.23 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCC
Q psy2382 7 SSTKEIISELKIGNMIILVDSENRENEGDIILSSDFV 43 (527)
Q Consensus 7 ~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~ 43 (527)
.+|++...+|++|+.||++|.. .|..=+++.+..
T Consensus 38 ~kv~qv~~qL~~GeavIvfse~---~Esv~I~~k~~~ 71 (78)
T 1y0n_A 38 VRVERARHALRRGEAVILFDPE---SQQCQLMLRSEV 71 (78)
T ss_dssp HHHHHHHHHHHTTSEEEEECTT---TCCEEEEEGGGS
T ss_pred HHHHHHHHHHHcCCEEEEECCC---CCeEeeeEHHHh
Confidence 4789999999999999999864 344445554433
No 27
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=27.52 E-value=39 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=29.1
Q ss_pred cccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcE
Q psy2382 4 KFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLI 59 (527)
Q Consensus 4 ~~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~ 59 (527)
..++..+++.+.||.|++|||-= +.++++.-..++-..+|.+
T Consensus 13 ~sy~Da~~I~d~Lr~~~~VvvNL--------------~~ld~~~AqRivDF~sG~~ 54 (87)
T 3p04_A 13 HSFEDAQVIGGAFRDGDAVVFDM--------------SLLSREEARRIVDFAAGLC 54 (87)
T ss_dssp SSGGGHHHHHHHHHTTCCEEEEC--------------TTSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEC--------------CCCCHHHHHHHHHHhccce
Confidence 35788999999999999998863 2344555555555555553
No 28
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=24.90 E-value=79 Score=28.85 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=45.8
Q ss_pred cccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHh-----CCCcEEEecCHHHHHHcC
Q psy2382 4 KFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKY-----ARGLICMTLTEKHCIQLK 72 (527)
Q Consensus 4 ~~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~-----~~G~~c~~l~~~~~~~L~ 72 (527)
+....+++|.+.|++|+.|++=.+ +-.-++++...++.+..+.+. ...++.++-+-+.+.++-
T Consensus 5 ~~~~~i~~a~~~L~~G~iva~ptd------t~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~ 72 (188)
T 1hru_A 5 LQRDAIAAAIDVLNEERVIAYPTE------AVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 72 (188)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECS------SSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGC
T ss_pred CCHHHHHHHHHHHHCCCEEEEeCC------CEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHH
Confidence 345678999999999999997654 567788888889888876431 334666666667777653
No 29
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=22.88 E-value=1.5e+02 Score=28.32 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=45.7
Q ss_pred ccccCChhHHHHHHHHHhCCCCcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEE---ehhcHHHHHHhch
Q psy2382 140 VLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKIG---TISNLICYRYKYE 206 (527)
Q Consensus 140 v~~r~ghtEaav~L~rlAgl~Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v---~~~dl~~~~~~~e 206 (527)
++.--|-..+++++.+-+|-.+++++|=+-..+|.-.......++-+++|+|+. +++||+.|.....
T Consensus 151 vitTG~T~~~a~~~l~~~Ga~vv~v~vlvdr~egG~~~l~a~~~~~~~~Gv~v~SL~~~~~l~~~~~~~~ 220 (238)
T 3n2l_A 151 VITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQG 220 (238)
T ss_dssp CCSSSHHHHHHHHHHHHTTCEEEEEEEEEECCCBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHSSC
T ss_pred eecccHHHHHHHHHHHHcCCEEEEEEEEEEcccCccchhhHHHHHHHHcCCCEEEEEEHHHHHHHHHHcC
Confidence 444444556799999999988888777654444322234566777678899976 5577888876543
No 30
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=22.13 E-value=1.5e+02 Score=27.37 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHH-----hCCCcEEEecCHHHHHHcC
Q psy2382 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSK-----YARGLICMTLTEKHCIQLK 72 (527)
Q Consensus 6 ~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~-----~~~G~~c~~l~~~~~~~L~ 72 (527)
...+++|.+.|++|+.|++=.+ +..-++++...++.+..+.+ ....++.++-+-+.+.++-
T Consensus 14 ~~~i~~a~~~L~~G~iva~pTd------tvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~ 79 (206)
T 1k7j_A 14 QRLINQAVEIVRKGGVIVYPTD------SGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYS 79 (206)
T ss_dssp HHHHHHHHHHHHTTCCEEEEET------TEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHB
T ss_pred HHHHHHHHHHHHCCCEEEEECC------CEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHh
Confidence 3459999999999999997765 56778888888888887643 3345666666667766653
No 31
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=20.10 E-value=5e+02 Score=24.60 Aligned_cols=138 Identities=7% Similarity=0.029 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhCCCCcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhh-------cccccc
Q psy2382 146 HTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRK-------AEYNIN 218 (527)
Q Consensus 146 htEaav~L~rlAgl~Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~-------~~~~lp 218 (527)
..+.-++..+-.|+..-.|+..=...|. .-.+..|+++.+.+++-......+........... ......
T Consensus 50 ~~~~l~~~l~~~g~~i~~Il~TH~H~DH----~gg~~~l~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (298)
T 4efz_A 50 SADQLIARVAALGARVRWLLETHVHADH----LSAAPYLKTRVGGEIAIGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRL 125 (298)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSSCCSSS----BCCHHHHHHHHCCEEEEETTHHHHHHHHHHHTTCCTTSCSSSTTSSEE
T ss_pred cHHHHHHHHHHCCCcceEEEECCCchhh----hhhHHHHHHHhCCcEEEChhHHHHHHHHHHhcCCcccccccccCCCEE
Confidence 4455667777778874444433223332 22456677777898876655433322111111000 000011
Q ss_pred ------CCcccEEEEEEeeCCCCcEEEEEEeccCCCCCCccEEEcccCcchhhcc-----CCCCCCCCCChhHHHHHHHH
Q psy2382 219 ------TLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLH-----AKTSSCTQNNISSIMKIMKL 287 (527)
Q Consensus 219 ------t~~G~f~~~~y~~~~~~~eh~alv~G~~~~~~~~lvRvHsec~tgDvfg-----s~~cdc~~~~~~qL~~aL~~ 287 (527)
...|.+++.++..+-....|+++...+-....+. -..-.++||++- +.+||-......++.+++++
T Consensus 126 ~~~g~~l~~g~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~---~~~~lftGD~l~~~~~g~~r~d~~~~d~~~~~~Sl~k 202 (298)
T 4efz_A 126 LDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDA---RDAAAFVGDTLFMPDYGTARCDFPGGDARSLYRSIRK 202 (298)
T ss_dssp ECTTCEEEETTEEEEEEECCSSSTTCEEEEEEETTCCGGG---CBCEEECCSSBCCTTTCBCCCCSTTCCHHHHHHHHHH
T ss_pred eCCCCEEEECCEEEEEEECCCCCcccEEEEECCCcccccC---CceEEEEcCccccCCCCCccCCCCCCCHHHHHHHHHH
Confidence 1124555666655444445666655432100000 001567999753 33666432345778888888
Q ss_pred Hhc
Q psy2382 288 IKN 290 (527)
Q Consensus 288 i~~ 290 (527)
+..
T Consensus 203 l~~ 205 (298)
T 4efz_A 203 VLS 205 (298)
T ss_dssp HTT
T ss_pred Hhc
Confidence 876
Done!