RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2382
(527 letters)
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavine biosynthesis, skeletal rearrangement,
antimicrobial target; 1.40A {Escherichia coli} SCOP:
d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Length = 217
Score = 382 bits (983), Expect = e-132
Identities = 94/204 (46%), Positives = 139/204 (68%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ ++ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
QL L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+
Sbjct: 73 DRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLN 132
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
+PGH+FPL+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I+F+
Sbjct: 133 RPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFA 192
Query: 186 KLHNIKIGTISNLICYRYKYENII 209
HN+ + TI +L+ YR +E
Sbjct: 193 NKHNMALVTIEDLVAYRQAHERKA 216
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A
{Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A
Length = 206
Score = 368 bits (947), Expect = e-127
Identities = 84/203 (41%), Positives = 131/203 (64%), Gaps = 2/203 (0%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ S + ++++ G +I++D E+RENEGD+I +++ TP + FM +Y G +C+ L
Sbjct: 4 LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDG 63
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
C +L L M N GT +TV+++A NG+ TGISASDRA T+++ + + D
Sbjct: 64 AICDRLGLLPMYAVNQDKHGTAYTVTVDARNGIGTGISASDRATTMRLLADPTSVADDFT 123
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILN--DDGTMARLPDLIK 183
+PGH+ PL+AK GGVL R GHTEA DL ++AGL P+ ICEI++ D+G+MA +L
Sbjct: 124 RPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRV 183
Query: 184 FSKLHNIKIGTISNLICYRYKYE 206
F+ H + + TI++LI +R K+E
Sbjct: 184 FADEHGLALITIADLIEWRRKHE 206
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase,
synthetic gene, ISO; 1.60A {Candida albicans} SCOP:
d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Length = 204
Score = 366 bits (941), Expect = e-126
Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 2/205 (0%)
Query: 1 MYNKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLIC 60
M N F + +E + K G +I++D E+RENEGD+I++++ +T + F+ +Y+ G +C
Sbjct: 1 MTNIF-TPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVC 59
Query: 61 MTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAK 120
+ L+E+ QL+L M + GT +T++ + A G TTGISA DRA T + ++ +K
Sbjct: 60 VPLSEERANQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSK 119
Query: 121 PSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMARLP 179
P D ++PGHI PL+A G + R GHTEA L+ LAGL P+ VICE++ D DG M RL
Sbjct: 120 PQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLD 179
Query: 180 DLIKFSKLHNIKIGTISNLICYRYK 204
D I+F K H IKI I+ L+ Y K
Sbjct: 180 DCIQFGKKHGIKIININQLVEYISK 204
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesi antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} SCOP:
d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Length = 233
Score = 360 bits (926), Expect = e-123
Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 12/221 (5%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ ++I K G ++++D +RENE D+I++++ VT + FM +++ GLIC LT
Sbjct: 12 FDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTP 71
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAA-NGVTTGISASDRAHTIKVASSKKAKPSDI 124
+ L L M N GT +TVS++A TTGISA DRA ++ ++ A+PS
Sbjct: 72 ERTTALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHF 131
Query: 125 VQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGT---------- 174
+PGH+FPL+A GGV R GHTEAG +L +LAG P AVI EI++D
Sbjct: 132 RRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAP 191
Query: 175 -MARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAE 214
M R + + F++ +K+ TI ++I + K E ++
Sbjct: 192 GMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLETNGS 232
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A
{Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB:
1pvy_A* 1pvw_A
Length = 227
Score = 337 bits (867), Expect = e-114
Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 25/223 (11%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+++ ++ I LK G +I++ DS+ RE E D++++S F+TP I M K A GLIC L
Sbjct: 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHP 60
Query: 66 KHCIQLKLDMMT------------------KKNNSSFGTNFTVSIEAANGVTTGISASDR 107
C +L + M ++F+++I TGI+ +DR
Sbjct: 61 DICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDR 119
Query: 108 AHTIKVA------SSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTP 161
A TIK + PG + L+A +G V R GHTE L +LA L P
Sbjct: 120 AFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVP 179
Query: 162 SAVICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYK 204
ICE++ DDG + ++++ HN+ + +I Y
Sbjct: 180 ITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLD 222
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT
site, phage lambda, lambdan antitermina antitermination;
HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A
1ey1_A
Length = 141
Score = 142 bits (360), Expect = 1e-40
Identities = 54/135 (40%), Positives = 71/135 (52%)
Query: 385 KNKTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDIN 444
R RARE A+Q +Y W + D+ +E + VD YF +L GV +
Sbjct: 3 MEPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTA 62
Query: 445 FLRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGY 504
+L + + R + EL +E VL I YEL +PYKV INEAIEL KSFG D +
Sbjct: 63 YLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSH 122
Query: 505 KYVNKILDKVALNIR 519
K+VN +LDK A IR
Sbjct: 123 KFVNGVLDKAAPVIR 137
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical
bundle, structural genomics, PSI, protein structure
initiative; 1.60A {Mycobacterium tuberculosis} SCOP:
a.79.1.1
Length = 156
Score = 131 bits (332), Expect = 2e-36
Identities = 27/142 (19%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 385 KNKTPRHRAREFALQGIYQWLFNNMDVNLI---ETYIKEISNFYKVDKKYFYLILRGVIN 441
K RH+AR+ A+ +++ + + + E Y + RGV
Sbjct: 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSE 64
Query: 442 DINFLRYDLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGN 500
+ ++ + +++ L +++ +L + +EL +P V+++EA++L K
Sbjct: 65 HAAHIDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST 124
Query: 501 IDGYKYVNKILDKVALNIRNIK 522
D +VN +L +V L ++
Sbjct: 125 DDSPGFVNGVLGQVMLVTPQLR 146
>1tzv_A NUSB protein, N utilization substance protein B homolog;
RNA-protein interaction, transcriptional
antitermination, transcription regulation; 1.35A
{Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A
1tzw_A 1tzx_A*
Length = 142
Score = 130 bits (330), Expect = 3e-36
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 387 KTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFL 446
KTPR R R + ++Q F + + K K+ +RG+ +++ +
Sbjct: 2 KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMI 61
Query: 447 RYDLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYK 505
+S +++ S+N LS ++ VL + TYEL IP +V I+EAIE+ K +G + K
Sbjct: 62 DDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGK 121
Query: 506 YVNKILDKVALNIRNIKFKKI 526
+VN ILD++A + ++
Sbjct: 122 FVNGILDRIAKEHAPKEKFEL 142
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP:
c.16.1.1 PDB: 1t13_A* 1xn1_A
Length = 158
Score = 128 bits (325), Expect = 2e-35
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
L + VPGA EIPL K + + ++ ++ +I G Y + +A I
Sbjct: 36 LAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVI 95
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNK 387
+ +MQ+ ++ +P+++ +LT ++ K K
Sbjct: 96 NGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVK 136
>3r2d_A Protein NUSB, N utilization substance protein B; cross species
NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB:
2jr0_A 3r2c_A*
Length = 149
Score = 127 bits (321), Expect = 5e-35
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 2/141 (1%)
Query: 387 KTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVD-KKYFYLILRGVINDINF 445
R AR+ A +Y+W + + + E N D +Y ++ + I
Sbjct: 2 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEE 61
Query: 446 LRYDLSLIIDR-SINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGY 504
+ + + SI+ L +E L +G EL + + ++LVK + +
Sbjct: 62 IDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAG 121
Query: 505 KYVNKILDKVALNIRNIKFKK 525
K+VN +L + ++
Sbjct: 122 KFVNGVLSAIYKAYITSSKEE 142
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A
{Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A
1vsx_A 3jv8_A
Length = 154
Score = 126 bits (319), Expect = 1e-34
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
L+++G +I VPGA EIP A K + + KK++ +I +G +IRG T H++ + NE
Sbjct: 38 LLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAA 97
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTK 380
I Q + +P+I I+TTE IEQA R TK
Sbjct: 98 KGIAQAANTTGVPVIFGIVTTENIEQAIERAGTK 131
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
riboflavin S; alpha-beta, transferase; HET: INI; 2.53A
{Mesorhizobium loti}
Length = 157
Score = 126 bits (319), Expect = 2e-34
Identities = 20/101 (19%), Positives = 42/101 (41%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
+ G + VPGA EIPL + + + ++ ++ ++ G Y E +A+ I
Sbjct: 37 MADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVI 96
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNK 387
+M + + +P+++A+LT + K
Sbjct: 97 DGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRFFFEHFTVK 137
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis,
ligand binding, transferase; 2.00A {Schizosaccharomyces
pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A*
1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Length = 159
Score = 124 bits (314), Expect = 8e-34
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 289 KNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISN 348
K+ + +NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ +
Sbjct: 46 KHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHG 105
Query: 349 IMQISIKNNIPIINAILTTETIEQANSRILTK 380
+M++ + + +P+I +LT EQA R
Sbjct: 106 LMRVGLDSGVPVILGLLTVLNEEQALYRAGLN 137
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin
biosynthesis, transferase; 1.60A {Aquifex aeolicus}
SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Length = 154
Score = 121 bits (306), Expect = 9e-33
Identities = 35/94 (37%), Positives = 61/94 (64%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
++++G +E++I + VPG+ EIP+A + + + + +IAIGV+IRG T HF+ IA+E
Sbjct: 38 IVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVS 97
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTK 380
+ +S++ PI ++T +T+EQA R TK
Sbjct: 98 KGLANLSLELRKPITFGVITADTLEQAIERAGTK 131
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral,
flavodoxin like fold, transferase, DMRL riboflavin
biosynthesis, drug targe; 3.50A {Salmonella typhimurium}
PDB: 3mk3_A
Length = 156
Score = 120 bits (303), Expect = 2e-32
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 287 LIKNG-AQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANET 345
L + G ++ NI + VPGA E+PLA + + + K++ ++A+G +IRG T HFE +A
Sbjct: 38 LTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGA 97
Query: 346 ISNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNK 387
+ + ++ + +P+ +LTTE+IEQA R TK NK
Sbjct: 98 SNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAG---NK 136
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase;
HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Length = 156
Score = 117 bits (296), Expect = 2e-31
Identities = 24/101 (23%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
K E +I + VPGA E+ + + + + K++ ++ +G +++G+T H++ + N
Sbjct: 39 FKKYSVNE-DIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSAS 97
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNK 387
S ++ + + +P + +LT + ++QA +R K NK
Sbjct: 98 SGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAG---NK 135
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 118 bits (297), Expect = 3e-31
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFELI 341
+ G +E NI+ +VPG+ E+P K + K +V+I IGV+I+G T HFE I
Sbjct: 42 MASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYI 101
Query: 342 ANETISNIMQISIKNNIPIINAILTTETIEQANSRILTKV-NLIKNK 387
++ T +M + K ++P+I +LT T EQA +R + + N
Sbjct: 102 SDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARAGIDEAHSMHNH 148
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1,
transferase; 2.22A {Brucella abortus} PDB: 2f59_A
2o6h_A*
Length = 157
Score = 116 bits (294), Expect = 5e-31
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQ-----IKKFNVLIAIGVIIRGETYHFELI 341
L + GA ++VPGALEIP + + +++ +A+G +IRGETYHF+++
Sbjct: 38 LDEAGA---TYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIV 94
Query: 342 ANETISNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNK 387
+NE+ + +S++ +I I N ILT E EQA + K+K
Sbjct: 95 SNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARRED---KDK 137
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin
biosynthesis, inhibitor binding; HET: TP6; 1.6A
{Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A*
2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Length = 160
Score = 107 bits (270), Expect = 1e-27
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
G + + V GA+EIP+ + + + + ++A+GV+IRG+T HF+ + +
Sbjct: 43 AAGCGLD--DPTVVRVLGAIEIPVVAQELA--RNHDAVVALGVVIRGQTPHFDYVCDAVT 98
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSR 376
+ ++S+ ++ PI N +LTT T EQA R
Sbjct: 99 QGLTRVSLDSSTPIANGVLTTNTEEQALDR 128
>1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ;
3.10A {Magnaporthe grisea} SCOP: c.16.1.1
Length = 200
Score = 104 bits (261), Expect = 5e-26
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 286 KLIKNGAQEKNILHISVPGALEIPLALKNIIQI--------------------------- 318
KL+ G +E NI+ SVPG+ E+P+A++ +
Sbjct: 40 KLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTA 99
Query: 319 ---------KKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTET 369
F+ LIAIGV+I+GET HFE IA+ +M++ + +P+I +LT T
Sbjct: 100 LPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLT 159
Query: 370 IEQANSRILTKVNLIKNK 387
+QA +R N
Sbjct: 160 DDQAKARAGVIEG-SHNH 176
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL;
2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Length = 156
Score = 71.5 bits (175), Expect = 5e-15
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 285 MKLIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANE 344
+K +K + I+ +VPG ++P+A K +++ + ++++A+G+ G+ ++ A+E
Sbjct: 22 IKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMP--GKAEKDKVCAHE 79
Query: 345 TISNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIY 402
+M + N II + E + + L + RA E A Y
Sbjct: 80 ASLGLMLAQLMTNKHIIE--VFVHEDEAKDDKELDWLAK-------RRAEEHAENVYY 128
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-08
Identities = 46/298 (15%), Positives = 101/298 (33%), Gaps = 101/298 (33%)
Query: 239 LTLIYGSINPNKIIP--IWLN-QQL-SIF-DFLHAKTSSCTQNN-ISS----IMKIMKLI 288
LTL +GS+ ++P + QL F L T ++ ++ + K + +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 289 KNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISN 348
+ + + ++ L + FE +
Sbjct: 69 SSLVEPSKVGQFD-----QV---LNLCLT-------------------EFE-------NC 94
Query: 349 IMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKN--------KTPRHRAREFAL-- 398
++ N+I +A L + +++ ++ ++ LIKN K P + AL
Sbjct: 95 YLE---GNDI---HA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 399 ---QG---IYQWLFN---NMDVNLIETYIKEISNFYKVDKKYFYLI------LRGVINDI 443
+G + +F N + Y +E+ + Y+ Y L+ ++++
Sbjct: 148 AVGEGNAQLVA-IFGGQGN-----TDDYFEELRDLYQT---YHVLVGDLIKFSAETLSEL 198
Query: 444 NFLRYDLSLIIDRSINELS---------SIEYVVL------LIGTYELKSHYKIPYKV 486
D + + +N L +Y++ LIG +L +HY + K+
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAKL 255
Score = 52.7 bits (126), Expect = 3e-07
Identities = 44/274 (16%), Positives = 79/274 (28%), Gaps = 107/274 (39%)
Query: 1 M----YNKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPN----AINFMS 52
M Y + +++ + D+ ++ G IL D V N I+F
Sbjct: 1631 MGMDLYKTS-KAAQDVWNR---------ADNHFKDTYGFSIL--DIVINNPVNLTIHFGG 1678
Query: 53 KYAR-------GLICMTLTEKHCIQLKLDMMTKKNNSS--FG--------TNFT-VSIEA 94
+ + +I T+ + K+ ++++S F T FT ++
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL-- 1736
Query: 95 ANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPL-----QAKKGGVL-------- 141
+A + SK P+D GH L A V+
Sbjct: 1737 ---TLMEKAA------FEDLKSKGLIPADATFAGH--SLGEYAALASLADVMSIESLVEV 1785
Query: 142 --IRG-------GHTEAGCDLTKLAGLTPSAV----------------------ICEILN 170
RG E G + + P V + EI+N
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 171 DD---------GTMA---RLPDLIKFSKLHNIKI 192
+ G + + +++ F KL I I
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 50.0 bits (119), Expect = 2e-06
Identities = 44/223 (19%), Positives = 64/223 (28%), Gaps = 72/223 (32%)
Query: 60 CMTLTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANG----VTTGISAS-----DRAHT 110
M L+ + Q ++ K NS V I NG V +G S
Sbjct: 337 PM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 111 IKVA----------SSKKAKPSD----IVQPGH---------IFPLQAKKGGVLIRGG-- 145
K S +K K S+ + P H + K V
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 146 -----HTEAGCDLTKLAG-LTPSAVICEILNDDGTMARLP----DLIKFSKLHNIKIGT- 194
T G DL L+G ++ V C + RLP +F H + G
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDC--------IIRLPVKWETTTQFKATHILDFGPG 507
Query: 195 ----ISNLICYRYKYEN--------IIKRKAEYNINTLYGNFK 225
+ L + N I+ + N + YG FK
Sbjct: 508 GASGLGVLT-----HRNKDGTGVRVIVAGTLDINPDDDYG-FK 544
Score = 33.1 bits (75), Expect = 0.28
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 45/116 (38%)
Query: 457 SINELS---------SIEYVVLLI---GTY---------ELKSHYKI----PYKVIIN-- 489
S+ E + SIE +V ++ G +S+Y + P +V +
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 490 -EAIE-LVKSFG------------NIDGYKYV----NKILDKVALNIRNIKFKKIN 527
EA++ +V+ G N++ +YV + LD V + IK +KI+
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 86 TNFTVSIEAAN----G---VTTG-ISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKK 137
T + V E N V G + A D V + K + DI++ L+ +
Sbjct: 1837 TGWLV--EIVNYNVENQQYVAAGDLRALDTV--TNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 138 G 138
G
Sbjct: 1893 G 1893
Score = 29.6 bits (66), Expect = 3.5
Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 39/142 (27%)
Query: 399 QGI---------Y------QWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGV---- 439
QG Y Q ++N D + +TY I + + + G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 440 INDINFLRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINE------AI- 492
I + Y ++I + ++ E + I + ++ K +++ A+
Sbjct: 1684 IRE----NYS-AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-KGLLSATQFTQPALT 1737
Query: 493 -------ELVKSFGNIDGYKYV 507
E +KS G I
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 54/436 (12%), Positives = 131/436 (30%), Gaps = 120/436 (27%)
Query: 152 DLTKLAGLTPSAVICEIL---NDDGTMARLPDLIK----------FSKLHNIKIGTISNL 198
D+ K + I I+ + RL + ++ I + +
Sbjct: 40 DMPK--SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 199 ICYRYKYENIIKRKAEYNINTLYGNFKII----VYIDKINNDIHLTLIYGSINPNKIIPI 254
I + +++ R + LY + ++ V + + L+ + P K + I
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLI 155
Query: 255 ---------WL-------NQQLSIFDF-LH-AKTSSCTQNNISSIMKIM-----KLIKNG 291
W+ + DF + +C N+ ++++++ ++ N
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETVLEMLQKLLYQIDPNW 213
Query: 292 AQEKNILHISVPGALE-IPLALKNIIQIKKF-NVLIAIGVIIRGETYHFELIANETISNI 349
+ ++ + I L+ +++ K + N L+ ++ + N N
Sbjct: 214 TSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLN-------VQNAKAWNA 261
Query: 350 MQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIY------- 402
+S K IL T +R + + T H + + +
Sbjct: 262 FNLSCK--------ILLT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 403 --QWLFNNMDVNLIETYIKEISNFYKVDKKYFYLI---LRGVINDINFLRY----DLSLI 453
++L + + + + +I +R + + ++ L+ I
Sbjct: 307 LLKYL--DCRPQDLPREVLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 454 IDRSINELSSIE----YVVLLIGTYELKSHYKIPYKVI-------INEAIELV------K 496
I+ S+N L E + L + IP ++ I + +V
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 497 SFGNIDGYKYVNKILD 512
S + I
Sbjct: 415 SLVEKQPKESTISIPS 430
Score = 39.5 bits (91), Expect = 0.003
Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 346 ISNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGIYQWL 405
+ ++ + + I+ I+ ++ R+ + L K + + E L+ Y++L
Sbjct: 38 VQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFL 94
Query: 406 FNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDI------NFLRYDLSLIIDRSIN 459
+ + + + + D+ Y ND N R L + +++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLY---------NDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 460 ELSSIEYVVL 469
EL + V++
Sbjct: 146 ELRPAKNVLI 155
Score = 32.1 bits (72), Expect = 0.57
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 19/93 (20%)
Query: 133 LQAKKGGVLIRGGHTEAGCDLTKLAGLTP----SAVICEILNDDGTMARLPDLIKFSKLH 188
L+ K IR T + L L IC+ ND + ++ F L
Sbjct: 503 LEQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERLVNAILDF--LP 553
Query: 189 NIKIGTISNLICYRYKYENIIKRKAEYNINTLY 221
I KY ++++ ++
Sbjct: 554 KI------EENLICSKYTDLLRIALMAEDEAIF 580
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 46.4 bits (111), Expect = 1e-05
Identities = 21/135 (15%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 388 TPRHRAREFALQGIYQWLFNNMDVN-LIETYIKEISNFYKVDKKYFYLILRGVINDINFL 446
+ R A Q + Q + ++ ++ +++S DK + GV+ ++ L
Sbjct: 2 KKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVS---DKDKALLQELCFGVLRTLSQL 58
Query: 447 RYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKY 506
+ ++ ++ R + + ++++G Y+L + +IP + E +E +
Sbjct: 59 DWLINKLMARPMTGKQRTVHYLIMVGLYQLL-YTRIPPHAALAETVEGAIAIKRPQLKGL 117
Query: 507 VNKILDKVALNIRNI 521
+N +L R
Sbjct: 118 INGVL-------RQF 125
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc,
magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB:
2bz0_A
Length = 196
Score = 43.7 bits (104), Expect = 4e-05
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNK 250
+KR AE + T +G+F ++ + + H+ L+YG I+ +
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT 44
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 40.3 bits (95), Expect = 0.001
Identities = 9/84 (10%), Positives = 21/84 (25%), Gaps = 5/84 (5%)
Query: 438 GVINDINFLRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKS 497
++ + + I+ + L L + + P I
Sbjct: 59 DIMKKQGLIDKVIKEIVGVTPLILDPWLRAALRVAVDIA--LFHDPSSQTIKNLRWKASD 116
Query: 498 FGNIDGYKYVNKILDKVALNIRNI 521
F + + YV + + I
Sbjct: 117 FISSRTHPYVGMYFWDL---LDKI 137
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 30.7 bits (70), Expect = 1.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 141 LIRGGHTEAGCDL-TKLAGLTPSAVICEIL 169
+ + G DL + A PS +I +L
Sbjct: 129 MKQKGCANGPVDLVKEFALPVPSYIIYTLL 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.388
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,927,549
Number of extensions: 498138
Number of successful extensions: 1030
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 48
Length of query: 527
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 429
Effective length of database: 3,965,535
Effective search space: 1701214515
Effective search space used: 1701214515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.6 bits)