RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2382
(527 letters)
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 220 bits (562), Expect = 8e-70
Identities = 94/201 (46%), Positives = 139/201 (69%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ ++ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE
Sbjct: 9 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
QL L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+
Sbjct: 69 DRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLN 128
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
+PGH+FPL+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I+F+
Sbjct: 129 RPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFA 188
Query: 186 KLHNIKIGTISNLICYRYKYE 206
HN+ + TI +L+ YR +E
Sbjct: 189 NKHNMALVTIEDLVAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 217 bits (553), Expect = 2e-68
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 25/218 (11%)
Query: 8 STKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKH 67
+ ++ I LK G +I++ DS+ RE E D++++S F+TP I M K A GLIC L
Sbjct: 2 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDI 61
Query: 68 CIQLKLDMMTKKNNS------------------SFGTNFTVSIEAANGVTTGISASDRAH 109
C +L + M ++F+++I TGI+ +DRA
Sbjct: 62 CNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRK-TFTGITDNDRAF 120
Query: 110 TIK--VASSKKAKPSD----IVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSA 163
TIK K+ + +D PG + L+A +G V R GHTE L +LA L P
Sbjct: 121 TIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPIT 180
Query: 164 VICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICY 201
ICE++ DDG + ++++ HN+ + +I Y
Sbjct: 181 TICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 211 bits (539), Expect = 2e-66
Identities = 86/203 (42%), Positives = 128/203 (63%), Gaps = 2/203 (0%)
Query: 3 NKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMT 62
N F + +E + K G +I++D E+RENEGD+I++++ +T + F+ +Y+ G +C+
Sbjct: 1 NIF-TPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVP 59
Query: 63 LTEKHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPS 122
L+E+ QL+L M + GT +T++ + A G TTGISA DRA T + ++ +KP
Sbjct: 60 LSEERANQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQ 119
Query: 123 DIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILND-DGTMARLPDL 181
D ++PGHI PL+A G + R GHTEA L+ LAGL P+ VICE++ D DG M RL D
Sbjct: 120 DFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDC 179
Query: 182 IKFSKLHNIKIGTISNLICYRYK 204
I+F K H IKI I+ L+ Y K
Sbjct: 180 IQFGKKHGIKIININQLVEYISK 202
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 204 bits (519), Expect = 3e-63
Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 12/213 (5%)
Query: 7 SSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEK 66
+ ++I K G ++++D +RENE D+I++++ VT + FM +++ GLIC LT +
Sbjct: 2 DAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPE 61
Query: 67 HCIQLKLDMMTKKNNSSFGTNFT-VSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
L L M N GT +T TTGISA DRA ++ ++ A+PS
Sbjct: 62 RTTALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFR 121
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDG-----------T 174
+PGH+FPL+A GGV R GHTEAG +L +LAG P AVI EI++D
Sbjct: 122 RPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPG 181
Query: 175 MARLPDLIKFSKLHNIKIGTISNLICYRYKYEN 207
M R + + F++ +K+ TI ++I + K E
Sbjct: 182 MLRGDECVAFARRWGLKVCTIEDMIAHVEKTEG 214
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli
[TaxId: 562]}
Length = 139
Score = 95.5 bits (237), Expect = 5e-24
Identities = 54/134 (40%), Positives = 71/134 (52%)
Query: 386 NKTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINF 445
R RARE A+Q +Y W + D+ +E + VD YF +L GV + +
Sbjct: 2 KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAY 61
Query: 446 LRYDLSLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYK 505
L + + R + EL +E VL I YEL +PYKV INEAIEL KSFG D +K
Sbjct: 62 LDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHK 121
Query: 506 YVNKILDKVALNIR 519
+VN +LDK A IR
Sbjct: 122 FVNGVLDKAAPVIR 135
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
maritima [TaxId: 2336]}
Length = 141
Score = 87.9 bits (217), Expect = 3e-21
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 387 KTPRHRAREFALQGIYQWLFNNMDVNLIETYIKEISNFYKVDKKYFYLILRGVINDINFL 446
KTPR R R + ++Q F + + K K+ +RG+ +++ +
Sbjct: 2 KTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMI 61
Query: 447 RYDL-SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYK 505
+ + S+N LS ++ VL + TYEL IP +V I+EAIE+ K +G + K
Sbjct: 62 DDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGK 121
Query: 506 YVNKILDKVALNIR 519
+VN ILD++A
Sbjct: 122 FVNGILDRIAKEHA 135
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 131
Score = 86.4 bits (213), Expect = 8e-21
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
Query: 390 RHRAREFALQGIYQWLFNNMDVNLIE---TYIKEISNFYKVDKKYFYLILRGVINDINFL 446
RH+AR+ A+ +++ + + + E Y + RGV +
Sbjct: 2 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 61
Query: 447 RYDL-SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYK 505
+ + + +++ L +++ +L + +EL +P V+++EA++L K D
Sbjct: 62 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPG 121
Query: 506 YVNKILDKV 514
+VN +L +V
Sbjct: 122 FVNGVLGQV 130
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus
(Magnaporthe grisea) [TaxId: 148305]}
Length = 195
Score = 81.3 bits (200), Expect = 2e-18
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 286 KLIKNGAQEKNILHISVPGALEIPLALKNII----------------------------- 316
KL+ G +E NI+ SVPG+ E+P+A++ +
Sbjct: 36 KLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLGSSTTDLTA 95
Query: 317 -------QIKKFNVLIAIGVIIRGETYHFELIANETISNIMQISIKNNIPIINAILTTET 369
F+ LIAIGV+I+GET HFE IA+ +M++ + +P+I +LT T
Sbjct: 96 LPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLT 155
Query: 370 IEQANSRILTKVNLIKNK 387
+QA +R N
Sbjct: 156 DDQAKARAGVIEGS-HNH 172
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 150
Score = 78.9 bits (194), Expect = 5e-18
Identities = 33/113 (29%), Positives = 57/113 (50%)
Query: 289 KNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETISN 348
K+ + +NI SVPG+ E+P ++ I ++ +I IGV+I+G T HFE I+ +
Sbjct: 38 KHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISEAVVHG 97
Query: 349 IMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNKTPRHRAREFALQGI 401
+M++ + + +P+I +LT EQA R A E L+ +
Sbjct: 98 LMRVGLDSGVPVILGLLTVLNEEQALYRAGLNGGHNHGNDWGSAAVEMGLKAL 150
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId:
235]}
Length = 148
Score = 78.5 bits (193), Expect = 7e-18
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
L + VPGA EIPL K + + ++ ++ +I G Y + +A I
Sbjct: 28 LAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVI 87
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNLIKNK 387
+ +MQ+ ++ +P+++ +LT ++ K K
Sbjct: 88 NGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVK 128
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 76.2 bits (187), Expect = 6e-17
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 286 KLIKNGAQEKNILHISVPGALEIPLALKNIIQI-----KKFNVLIAIGVIIRGETYHFEL 340
++ G +E NI+ +VPG+ E+P K + K +V+I IGV+I+G T HFE
Sbjct: 41 RMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEY 100
Query: 341 IANETISNIMQISIKNNIPIINAILTTETIEQANSRILTK-VNLIKNK 387
I++ T +M + K ++P+I +LT T EQA +R + + N
Sbjct: 101 ISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARAGIDEAHSMHNH 148
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId:
1423]}
Length = 154
Score = 74.3 bits (182), Expect = 2e-16
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 286 KLIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANET 345
L+++G +I VPGA EIP A K + + KK++ +I +G +IRG T H++ + NE
Sbjct: 37 ALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEA 96
Query: 346 ISNIMQISIKNNIPIINAILTTETIEQANSRILTK 380
I Q + +P+I I+TTE IEQA R TK
Sbjct: 97 AKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTK 131
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 140
Score = 72.0 bits (176), Expect = 9e-16
Identities = 19/131 (14%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
Query: 392 RAREFALQGIYQWLFNNMDVN-LIETYIKEISNFYKVDKKYFYLILRGVINDINFLRYDL 450
R A Q + Q + ++ ++ +++S+ DK + GV+ ++ L + +
Sbjct: 2 NLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDK---DKALLQELCFGVLRTLSQLDWLI 58
Query: 451 SLIIDRSINELSSIEYVVLLIGTYELKSHYKIPYKVIINEAIELVKSFGNIDGYKYVNKI 510
+ ++ R + + ++++G Y+ + +IP + E +E + +N +
Sbjct: 59 NKLMARPMTGKQRTVHYLIMVGLYQ-LLYTRIPPHAALAETVEGAIAIKRPQLKGLINGV 117
Query: 511 LDKVALNIRNI 521
L + +
Sbjct: 118 LRQFQRQQEEL 128
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId:
63363]}
Length = 154
Score = 71.6 bits (175), Expect = 2e-15
Identities = 35/94 (37%), Positives = 61/94 (64%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
++++G +E++I + VPG+ EIP+A + + + + +IAIGV+IRG T HF+ IA+E
Sbjct: 38 IVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVS 97
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTK 380
+ +S++ PI ++T +T+EQA R TK
Sbjct: 98 KGLANLSLELRKPITFGVITADTLEQAIERAGTK 131
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 155
Score = 71.2 bits (174), Expect = 3e-15
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 287 LIKNGAQEKNILHISVPGALEIPLALKNIIQIKKFNVLIAIGVIIRGETYHFELIANETI 346
K E + VPGA E+ + + + + K++ ++ +G +++G+T H++ + N
Sbjct: 39 FKKYSVNEDID-VVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSAS 97
Query: 347 SNIMQISIKNNIPIINAILTTETIEQANSRILTK 380
S ++ + + +P + +LT + ++QA +R K
Sbjct: 98 SGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGK 131
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 47.1 bits (111), Expect = 8e-07
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 209 IKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHA 268
+KR AE + T +G+F ++ + + H+ L+YG I+ + + ++ + D L +
Sbjct: 3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62
Query: 269 KTSSCTQNNISSIMKIMK 286
C +++ +I +
Sbjct: 63 LRCDCGFQLEAALTQIAE 80
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping
enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}
Length = 89
Score = 27.8 bits (62), Expect = 1.0
Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 221 YGNFKIIVYIDKINNDIHLTLIYGSINPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISS 280
+ I ++ + ++ + + G N I+ + ++ ++ N+ +
Sbjct: 11 SEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFAD--GTWKYIQGRSDKNQANDRLT 68
Query: 281 IMKIMKLIKNGAQEKNILHI 300
K + I+ +L +
Sbjct: 69 YEKTLLNIEENITIDELLDL 88
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 27.1 bits (60), Expect = 1.6
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 316 IQIKKFNVLIAIGVIIRGETYHFELIANETISNI-MQISIKNNIPIINAILTTETIEQAN 374
I+++ N+ + G+ F L + +S I ++I +P L E I +
Sbjct: 4 IKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD 63
Query: 375 SRILTKVNLIKNKT 388
S L N+
Sbjct: 64 SNSLAYYNMANGAV 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.388
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,953,585
Number of extensions: 96131
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 33
Length of query: 527
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 438
Effective length of database: 1,185,626
Effective search space: 519304188
Effective search space used: 519304188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)