BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2383
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43899|Y463_HAEIN Oxygen-independent coproporphyrinogen-III oxidase-like protein
HI_0463 OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=HI_0463 PE=3 SV=1
Length = 383
Score = 322 bits (826), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 171/374 (45%), Positives = 235/374 (62%), Gaps = 11/374 (2%)
Query: 11 IKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSL----PIILN 66
+ KLPPLSLYIH PWC++KCPYCDF+S+ K +I E+ Y+ LL D++ L I
Sbjct: 1 MPKLPPLSLYIHIPWCVQKCPYCDFNSHAQKSDIPEQDYIYHLLQDLQADLQRFKDSIQQ 60
Query: 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII 126
RK+H+IFIGGGTPSL S + YLLK IKK + F+ NI ITLEANP T E E+F Y
Sbjct: 61 RKLHSIFIGGGTPSLFSAESIAYLLKEIKKQIDFEDNIEITLEANPGTVEAERFKGYVSA 120
Query: 127 GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK-QYFNNFNLDLIYALPNQTLSEL 185
GI R+S+GIQSFN+ L LGR H++ +AK A+ +AK +FNLDL++ LPNQTL E
Sbjct: 121 GIMRISMGIQSFNDDKLQRLGRIHNAAEAKSAVNLAKVSGLKSFNLDLMHGLPNQTLEEA 180
Query: 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245
+ DL AI+ SPPH+S Y LTIEPNT F Y P +P +D + ++ LL Y+
Sbjct: 181 LDDLRQAIELSPPHISWYQLTIEPNT-MFAYRPPKLPDDDALWDIFEQGHQLLTMAGYQQ 239
Query: 246 YEISAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFP-NYIIRQIRYKNPNIYLKNIF 304
YE SAY+K G++ +HNLNYW+FGDYL IG G+H KL+FP I R + K+P YL+
Sbjct: 240 YETSAYAKAGFQCKHNLNYWRFGDYLAIGCGAHGKLTFPTGEITRFSKTKHPKGYLR--- 296
Query: 305 SGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLL 364
G + + K + K FEF +N RL + F + TG++ +++++ A + +
Sbjct: 297 -GEYLYEEKNVPKIDRPFEFFMNRFRLLEAVPKQEFEDYTGLSQSAVKNQIDFAIQQNYI 355
Query: 365 KRNNKNIKPTSFGR 378
N + + T G+
Sbjct: 356 VENADSWQITEHGK 369
>sp|P52062|YGGW_ECOLI Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
OS=Escherichia coli (strain K12) GN=yggW PE=3 SV=1
Length = 378
Score = 321 bits (823), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 231/379 (60%), Gaps = 7/379 (1%)
Query: 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTI 72
KLPPLSLYIH PWC++KCPYCDF+S+ +K + Y++ LL D++ + R++ TI
Sbjct: 3 KLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDNDVAYAQGREVKTI 62
Query: 73 FIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS 132
FIGGGTPSL+S + LL ++ L + IT+EANP T E ++F Y G+NR+S
Sbjct: 63 FIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNRIS 122
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNY 191
IG+QSF+ + L LGR H ++AK A ++A +FNLDL++ LP+Q+L E + DL
Sbjct: 123 IGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQSLEEALGDLRQ 182
Query: 192 AIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251
AI+ +PPHLS Y LTIEPNT F PP+ +P +D + ++ LL Y+ YE SAY
Sbjct: 183 AIELNPPHLSWYQLTIEPNTLFGSRPPV-LPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241
Query: 252 SKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSGNSIA 310
+K GY+ QHNLNYW+FGDY+GIG G+H K++FP+ I+R + ++P +++ G +
Sbjct: 242 AKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQ----GRYLE 297
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKN 370
+ +E FEF +N RL + F TG+ +I +L A G L
Sbjct: 298 SQRDVEATDKPFEFFMNRFRLLEAAPRVEFIAYTGLCEDVIRPQLDEAIAQGYLTECADY 357
Query: 371 IKPTSFGRYFLNDLQQIFL 389
+ T G+ FLN L ++FL
Sbjct: 358 WQITEHGKLFLNSLLELFL 376
>sp|P57615|Y550_BUCAI Oxygen-independent coproporphyrinogen-III oxidase-like protein
BU550 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU550 PE=3 SV=1
Length = 376
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 232/377 (61%), Gaps = 6/377 (1%)
Query: 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIF 73
LPP+SLYIH PWC+KKC YCDF+SY K+ I E KY+E LL D E L +I NR I+TIF
Sbjct: 4 LPPISLYIHIPWCLKKCGYCDFYSYVSKEIIPENKYIEHLLRDFERDLSLINNRNINTIF 63
Query: 74 IGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSI 133
IGGGTPSL+ +T + LL IKK + KNI I++EANP T E + F Y GINR S+
Sbjct: 64 IGGGTPSLLKNTSIKNLLNGIKKRKIISKNIEISIEANPKTLEYQNFIQYKNSGINRFSL 123
Query: 134 GIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAI 193
GIQ+FN+K L + RT++SK A AI +K+ +N NLDL+Y LP Q+L E + DL AI
Sbjct: 124 GIQTFNSKMLKKIERTYNSKDAMNAIIESKKISDNINLDLMYGLPGQSLEEALSDLQIAI 183
Query: 194 QYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
Q +P H+S Y LTIEPNT F+ + P D M + LLK YK YEIS+YSK
Sbjct: 184 QCNPSHISWYQLTIEPNTVFYA-KKIQTPHQDVVFNMLIEGDKLLKKAGYKKYEISSYSK 242
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSGNSIAKS 312
Y+ QHNLNYW FGDY+GIG GSH K++ N IIR I+ KN N +L SG I
Sbjct: 243 FNYQCQHNLNYWNFGDYIGIGCGSHGKITQKNGEIIRTIKNKNINDFL----SGKYINSV 298
Query: 313 KKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIK 372
++ K+ IFE+ +N RL F E T I IE ++ A + G L +
Sbjct: 299 YQVSKRDKIFEYFMNVFRLYKPIFKKHFRENTNIEESFIEKNIQIAIQEGFLINQSDCWH 358
Query: 373 PTSFGRYFLNDLQQIFL 389
T G+ FLN L +IFL
Sbjct: 359 TTKKGKNFLNSLLEIFL 375
>sp|Q8K928|Y532_BUCAP Oxygen-independent coproporphyrinogen-III oxidase-like protein
BUsg_532 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_532 PE=3 SV=1
Length = 376
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/379 (45%), Positives = 242/379 (63%), Gaps = 6/379 (1%)
Query: 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTI 72
KLPP+SLYIH PWCIKKC YCDF+SY K I EK+Y++ LL D+E L +I R+I++I
Sbjct: 3 KLPPISLYIHIPWCIKKCGYCDFYSYVNKSFIPEKEYIDHLLKDLEKDLSLIKEREINSI 62
Query: 73 FIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS 132
FIGGGTPSL+ + + +++ IKK + IT+EANP+T E ++F +Y GINR S
Sbjct: 63 FIGGGTPSLLKSSSIKKMMREIKKRINISNTAEITIEANPTTLEYKRFFNYKKSGINRFS 122
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYA 192
IG+Q+FN+ L + RT++ ++A A+E K+ NFNLD++Y LPNQ+L +++LDL YA
Sbjct: 123 IGVQTFNSDLLKKIERTYNKREAILAVEEIKKINKNFNLDIMYGLPNQSLKDVLLDLQYA 182
Query: 193 IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
++Y+P H+S Y LT+EPNT F+ L++P+ + M + LK + YK YEIS+Y+
Sbjct: 183 VKYNPTHISWYQLTLEPNTPFY-VKKLNLPNENNIFKMLVEGEKFLKQSGYKKYEISSYA 241
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNY-IIRQIRYKNPNIYLKNIFSGNSIAK 311
K YE QHNLNYW FGDY+GIG +H K++ N IIR I+ KN N ++ +G +
Sbjct: 242 KLNYECQHNLNYWNFGDYIGIGCSAHGKITQINGDIIRTIKNKNINDFM----NGKYLKH 297
Query: 312 SKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNI 371
+ KK FE+ +N RL F ERT IN I+ K+K A + G LK
Sbjct: 298 KNFVLKKDKPFEYFMNIFRLYKPVLKRQFEERTNINQNYIKEKIKKAIEKGYLKNKIDFW 357
Query: 372 KPTSFGRYFLNDLQQIFLN 390
T G+ FLN L +IFL+
Sbjct: 358 DTTKKGKMFLNSLLKIFLD 376
>sp|Q89A47|Y498_BUCBP Uncharacterized protein bbp_498 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_498 PE=3 SV=1
Length = 374
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 159/377 (42%), Positives = 208/377 (55%), Gaps = 11/377 (2%)
Query: 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG 76
L LYI+ PW K+ Y DF E KK I+EKKY+ LL D++ ++ NR I+TIFIGG
Sbjct: 4 LGLYINIPWPTKRYKYHDFKFPEYKKKINEKKYIHHLLQDLKKDSLLVPNRTINTIFIGG 63
Query: 77 GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
P+ T + YLLK IK ++ KN T+E + S +K Y GINR SI IQ
Sbjct: 64 IAPNFFKLTSIKYLLKKIKNIIPISKNAENTIEFHISKLSEKKIFYYKKFGINRFSIRIQ 123
Query: 137 SFNNKYLNILGRTHDSKQAKYAI-EIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
+F+ K N L + H SK + I +I + F N NLDLIY LP Q+L E +LDL AI
Sbjct: 124 TFDQKKFNSLSKVHISKNILHKIKKINIEKFKNINLDLIYGLPKQSLQEALLDLKTAISL 183
Query: 196 SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS--LLKNNYYKNYEISAYSK 253
P H+S IE N Y LS N N + + + LLK + YK YEIS+YSK
Sbjct: 184 KPNHISWCEFYIEKNNN--NYKNLSKSCN-LNIIWKIFLQGEKLLKKSGYKKYEISSYSK 240
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSGNSIAKS 312
T Y+ HNLNYWKFGDYLGIG +H K++ N II+ I+ KN LK +G K+
Sbjct: 241 TNYQCLHNLNYWKFGDYLGIGCNAHGKITQKNGKIIKTIKNKN----LKKFMNGKYTYKN 296
Query: 313 KKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIK 372
I KK L EF +N LRL F + T I+ I++++K A + L K K
Sbjct: 297 HIISKKNLSLEFFMNRLRLNTPIYRKDFKKYTYISEFYIKNEIKQAIEQNYLIETKKYWK 356
Query: 373 PTSFGRYFLNDLQQIFL 389
TS G FL+ L +IF+
Sbjct: 357 MTSKGIQFLDSLLEIFI 373
>sp|A5D7B1|RSAD1_BOVIN Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Bos taurus GN=RSAD1 PE=2 SV=1
Length = 442
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 162/296 (54%), Gaps = 11/296 (3%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E L+I+ + L + R++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRGVDEAALRRCLVIEAQTLLRLSGVRRVESVFFGGG 99
Query: 78 TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +L+ + + + +TLEANP++ + ++ G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQAAHLPADSEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH ++ A + A++ F ++DL+ LP Q + + L ++
Sbjct: 160 LDDTELQLLGRTHSARDALQTLAEAQRLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCC 219
Query: 197 PPHLSLYSLTIEPNTYFF---KYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
H+SLY L++E T F + L P + A M + ++L+ ++ YE+S +++
Sbjct: 220 DDHVSLYQLSLERGTTLFTQVQQGALPAPDPELAAEMYQEGRAVLREAGFRQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNIF 304
G S HN YW+ G YLG+G G+H + P R+ R + P+ ++K +
Sbjct: 280 NGALSTHNWTYWQCGQYLGVGPGAHGRF-IPQGAGGHTREARIQTLEPDSWMKEVM 334
>sp|Q5SUV1|RSAD1_MOUSE Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Mus musculus GN=Rsad1 PE=2 SV=1
Length = 442
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 174/329 (52%), Gaps = 12/329 (3%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E L+ + L + +++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRGVEEGTVRNCLVTEARTLLRLSGVQRVESVFFGGG 99
Query: 78 TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +L+ + + + + +TLEANP++ + ++ G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQEVYLPADSEVTLEANPTSAPGPRLAAFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH + A + A+ F ++DL+ LP Q + + L + +
Sbjct: 160 LDDAELQLLGRTHSASDALRTLAEARLLFPGRVSVDLMLGLPAQKVEPWLQQLQKLLYHC 219
Query: 197 PPHLSLYSLTIEPNTYFF---KYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
HLSLY LT+E T F + L P D A M + ++L++ ++ YE+S +++
Sbjct: 220 DDHLSLYQLTLERGTSLFAQVQQGTLPAPDPDLAAEMYQEGRTVLRDAGFRQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNI-FSGN 307
G S HN YW+ G YLGIG G+H + P R+ R + P+ ++K + G+
Sbjct: 280 NGALSTHNWTYWQCGQYLGIGPGAHGRF-VPQGTGGHTREARIQTLEPDNWMKEVTLFGH 338
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDGFS 336
K ++ K L+ E + LR G +
Sbjct: 339 GTRKCVRLGKLELLEEVLAMGLRTDVGVT 367
>sp|P54304|HEMN_BACSU Oxygen-independent coproporphyrinogen-III oxidase 1 OS=Bacillus
subtilis (strain 168) GN=hemN PE=2 SV=3
Length = 379
Score = 184 bits (468), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 190/381 (49%), Gaps = 12/381 (3%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
S YIH P+C C YCDF+ Y I+ ++ YL AL ++ ++ + TIFIGGG
Sbjct: 3 SAYIHIPFCEHICHYCDFNKYFIQSQPVDE-YLNALEQEMINTIAKTGQPDLKTIFIGGG 61
Query: 78 TPSLISDTGLDYLLKNIKKLLLFKKNIS-ITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
TP+ +S+ L L+ I ++L ++S +EANP EK G+NRLS G+Q
Sbjct: 62 TPTSLSEEQLKKLMDMINRVLKPSSDLSEFAVEANPDDLSAEKLKILKEAGVNRLSFGVQ 121
Query: 137 SFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
+F + L +GR H K + E A++ F N +LDL++ LP QTL L +N A+
Sbjct: 122 TFEDDLLEKIGRVHKQKDVFTSFERAREIGFENISLDLMFGLPGQTLKHLEHSINTALSL 181
Query: 196 SPPHLSLYSLTIEPNTYFF---KYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
H S+YSL +EP T F+ + L +P ++ A M + + S ++ + YEIS ++
Sbjct: 182 DAEHYSVYSLIVEPKTVFYNLMQKGRLHLPPQEQEAEMYEIVMSKMEAHGIHQYEISNFA 241
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFS-GNSIAK 311
K G ES+HNL YW Y G GAG+H + R + Y+ I G
Sbjct: 242 KAGMESKHNLTYWSNEQYFGFGAGAHGYIGG----TRTVNVGPVKHYIDLIAEKGFPYRD 297
Query: 312 SKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNNKN 370
+ ++ + I E M LR G S F E+ G ++ + S LK+ + GL+ +
Sbjct: 298 THEVTTEEQIEEEMFLGLRKTAGVSKKRFAEKYGRSLDGLFPSVLKDLAEKGLIHNSESA 357
Query: 371 IKPTSFGRYFLNDLQQIFLNN 391
+ T G+ N++ FL
Sbjct: 358 VYLTHQGKLLGNEVFGAFLGE 378
>sp|Q9HA92|RSAD1_HUMAN Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Homo sapiens GN=RSAD1 PE=2 SV=2
Length = 442
Score = 181 bits (459), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 160/296 (54%), Gaps = 11/296 (3%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E + L+ + + L + +++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRRLEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGG 99
Query: 78 TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +L+ + + ++ +TLEANP++ + + G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQAAHLPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH + A + A++ F ++DL+ LP Q + + L + +
Sbjct: 160 LDDTELRLLGRTHSACDALRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHC 219
Query: 197 PPHLSLYSLTIEPNTYFF---KYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
HLSLY L++E T F + L P + A M + ++L+ + YE+S +++
Sbjct: 220 DDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNIF 304
G S HN YW+ G YLG+G G+H + P R+ R + P+ ++K +
Sbjct: 280 NGALSTHNWTYWQCGQYLGVGPGAHGRF-MPQGAGGHTREARIQTLEPDNWMKEVM 334
>sp|A4IGH2|RSAD1_DANRE Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Danio rerio GN=rsad1 PE=2 SV=1
Length = 444
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 175/328 (53%), Gaps = 10/328 (3%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
SLY+H+P+C+K+C YC+F+ Y I ++ + E L + E L + +I ++F GGG
Sbjct: 45 SLYVHWPYCLKRCSYCNFNKY-ISRSENHDTMTECLQKETETLLKLSQVSRITSVFFGGG 103
Query: 78 TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL + + +L+ + K +TLE NP+ + +++ G+NR SIG+QS
Sbjct: 104 TPSLAQPSTIAAVLETVTKNSNLSDLAEVTLEVNPTPAGKARLKDFTLAGVNRFSIGVQS 163
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
N +L ILGR H + A + A++ ++D+++ALP Q++S L +
Sbjct: 164 LNADHLRILGRDHSVQHALQTVSEARKLCPGRVSVDIMFALPGQSVSCWQKQLEELLYVC 223
Query: 197 PPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
H+SLY LT+E T FK LS+P ++ A+M +L+ + + YE+S +++
Sbjct: 224 DDHISLYQLTLERGTQLFKQVESGKLSVPGDEVTAIMYKTACRVLEESGFHQYEVSNFAR 283
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKL--SFPNYIIRQIRYKN--PNIYLKNIFS-GNS 308
S+HN+ YW+ Y+G+G G+H + + R+ R + P++++K + S G
Sbjct: 284 NNAVSEHNMGYWRGHQYIGVGPGAHGRFVPHGDGGVQREARTQTLEPDVWIKEVQSRGRG 343
Query: 309 IAKSKKIEKKCLIFEFMLNALRLKDGFS 336
+ + L+ E ++ LR+ +G +
Sbjct: 344 TRRRITLHHLQLLEEVLVMGLRMNEGIT 371
>sp|P71756|HEMN_MYCTU Probable oxygen-independent coproporphyrinogen-III oxidase
OS=Mycobacterium tuberculosis GN=hemN PE=3 SV=1
Length = 375
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 191/386 (49%), Gaps = 26/386 (6%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKK--NISEKKYLEALLIDVELSLPIILNRKIHTIF 73
P +Y+H P+C+ +C YCDF++Y + +S ++L AL ++EL+ + +HT++
Sbjct: 5 PFGVYLHVPFCLTRCGYCDFNTYTPAQLGGVSPDRWLLALRAELELAAAKLDAPTVHTVY 64
Query: 74 IGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSI 133
+GGGTPSL+ L LL ++ + + ++ EANP + E F + G R+S+
Sbjct: 65 VGGGTPSLLGGERLATLLDMVRDHFVLAPDAEVSTEANPESTWPEFFATIRAAGYTRVSL 124
Query: 134 GIQSFNNKYLNILGRTHD-SKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYA 192
G+QS + L L R H + A A E + F + NLDLIY P ++ +L+ ++ A
Sbjct: 125 GMQSVAPRVLATLDRVHSPGRAAAAATEAIAEGFTHVNLDLIYGTPGESDDDLVRSVDAA 184
Query: 193 IQYSPPHLSLYSLTIEPNTYF---FKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249
+Q H+S Y+L +E T + L+ P +D A + + + L + YE+S
Sbjct: 185 VQAGVDHVSAYALVVEHGTALARRVRRGELAAPDDDVLAHRYELVDARLSAAGFAWYEVS 244
Query: 250 AYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNS- 308
+ + G E +HNL YW G + G G G+H + + R K+PN Y + I +G +
Sbjct: 245 NWCRPGGECRHNLGYWDGGQWWGAGPGAHGYIG----VTRWWNVKHPNTYAE-ILAGATL 299
Query: 309 -IAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKL---GLL 364
+A +++ L E +L +RL+ G L R G ++ + AE + GLL
Sbjct: 300 PVAGFEQLGADALHTEDVLLKVRLRQG----LPLARLG------AAERERAEAVLADGLL 349
Query: 365 KRNNKNIKPTSFGRYFLNDLQQIFLN 390
+ + T GR + + + L
Sbjct: 350 DYHGDRLVLTGRGRLLADAVVRTLLG 375
>sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase-like protein
sll1917 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1917 PE=3 SV=1
Length = 412
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 149/277 (53%), Gaps = 15/277 (5%)
Query: 14 LPPLSLYIHFPWCIKKCPYCDF-------HSYEIKKNISEKKYLEALLIDVELSLPIILN 66
L P + YIH P+C ++C YCDF S + + E Y+EA+ E++
Sbjct: 7 LMPTAAYIHIPFCRQRCFYCDFPIAVTGFQSLTLDGWVGE--YVEAVC--REIAGQQHQG 62
Query: 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII 126
+ + T+F GGGTPSL+ TGL+ +L + + L + I++E +P TF+ + Y +
Sbjct: 63 QPLQTVFFGGGTPSLLPITGLEKILLAVDQYLGIAPDAEISIEIDPGTFDQVQLQGYKNL 122
Query: 127 GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAI-EIAKQYFNNFNLDLIYALPNQTLSEL 185
GINR S+G+Q+F + L + GR H + A+ IAK+ N++LDLI LP QT ++
Sbjct: 123 GINRFSLGVQAFQDNLLALCGRHHRRRDIDQALTAIAKENIENWSLDLITGLPEQTAADW 182
Query: 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNY 242
L A+ P H+S Y L +EP T F K+ L++P + +A +L
Sbjct: 183 HSSLTLALAAGPKHISCYDLVLEPQTVFDKWEQRGKLAVPPPERSADFYRHGQEVLTQAG 242
Query: 243 YKNYEISAYSKTGYESQHNLNYWKFGDYLGIGAGSHS 279
+ +YEIS Y + G++ +HN YW+ Y G+G G+ S
Sbjct: 243 FHHYEISNYGRPGHQCRHNQIYWRNLPYYGLGMGATS 279
>sp|Q54VE8|RSAD1_DICDI Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Dictyostelium discoideum GN=rsad1 PE=3
SV=1
Length = 446
Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 175/313 (55%), Gaps = 41/313 (13%)
Query: 2 KYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSL 61
++K +N L K P+SL++++P+C K CPYC+F+ Y + ++ ++L ++E +
Sbjct: 13 QFKGYNKL---KDLPISLFVYWPYCSKICPYCNFNKYRDSDKVDHERMSKSLSRELESFV 69
Query: 62 ----------PIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL---LFKKNISITL 108
I R I +I+ GGGTPSL + ++ +KKL L ++I ITL
Sbjct: 70 KNIYLNSNENSFIRERPITSIYFGGGTPSLAKISTFVETIETMKKLFPSSLSIEDIEITL 129
Query: 109 EANPSTFEIE----KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 164
E NP +++ F Y +G+NR+S+G+QS +K L+ LGRTH+ QA+ +I+IA+
Sbjct: 130 EVNPDQKDLKNLLKDFKKY--VGVNRVSLGVQSLVDKDLHFLGRTHNRIQAEESIKIARD 187
Query: 165 YFNNFNLDLIYALP-NQTLSELMLDLNYAIQYSP--PHLSLYSLTIEPNTYFFKY----- 216
F++ DLIY+ +QTL + +L YA+ + H+SLY+LT E T F++
Sbjct: 188 LFDHVTFDLIYSRTIDQTLEQWRNELRYALNLADGNGHVSLYTLTFEQGTSFYRRLSSKG 247
Query: 217 ------PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKT-GYESQHNLNYWKFGD 269
PP S+D + D + ++ YEIS+++ + + +HNLNYW+ GD
Sbjct: 248 NKFKIIPPDDQKSSD----LYDLTVCEAEAMGFQQYEISSFASSHNQKGKHNLNYWRSGD 303
Query: 270 YLGIGAGSHSKLS 282
++GIG G+ S+L+
Sbjct: 304 FIGIGPGASSRLT 316
>sp|P0A1E1|HEMN_SALTY Oxygen-independent coproporphyrinogen-III oxidase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=hemN PE=3 SV=1
Length = 457
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 179/397 (45%), Gaps = 32/397 (8%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLY+H P+C K C +C + ++ +YL+AL ++ P+ +R + + G
Sbjct: 52 PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIRHRAPLFADRHVSQLHWG 111
Query: 76 GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTP+ ++ + L+ +++ F + I++E +P E++ G NRLS+G+
Sbjct: 112 GGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLRAEGFNRLSMGV 171
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
Q FN + ++ R D + + A+ F + N+DLIY LP QT L +
Sbjct: 172 QDFNKEVQRLVNREQDEEFIFALLNHARDIGFTSTNIDLIYGLPKQTPESFAFTLKRVTE 231
Query: 195 YSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDEN-AVMQDKITSLLKNNYY-------- 243
+P LS+++ P + K +PS + ++Q+ I SL + Y
Sbjct: 232 LNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQAGYQFIGMDHFA 291
Query: 244 -KNYEISAYSKTGYESQHNLNYWKFG--DYLGIGAGSHSKLSFPNYIIRQIR----YKNP 296
+ E++ + G ++ Y G D LG+G + S + Y+ Q Y+
Sbjct: 292 RPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIG-DGYMQNQKELKRYYQQV 350
Query: 297 NIYLKNIFSGNSIAKSKKIEK---KCLIFEFML--NALRLKDGFSPNLFFERTGINIKII 351
+ ++ G ++ + I + K LI F L NA+ + G F E +++++
Sbjct: 351 DERGNALWRGITLTRDDCIRRDVIKALICNFRLDFNAVEQQWGLH---FAEYFAEDLQLL 407
Query: 352 ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
K+ GL+ + K I+ T+ GR + ++ F
Sbjct: 408 SPLAKD----GLVDISEKGIQVTAKGRLLIRNICMCF 440
>sp|P0A1E2|HEMN_SALTI Oxygen-independent coproporphyrinogen-III oxidase OS=Salmonella
typhi GN=hemN PE=3 SV=1
Length = 457
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 179/397 (45%), Gaps = 32/397 (8%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLY+H P+C K C +C + ++ +YL+AL ++ P+ +R + + G
Sbjct: 52 PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIRHRAPLFADRHVSQLHWG 111
Query: 76 GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTP+ ++ + L+ +++ F + I++E +P E++ G NRLS+G+
Sbjct: 112 GGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLRAEGFNRLSMGV 171
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
Q FN + ++ R D + + A+ F + N+DLIY LP QT L +
Sbjct: 172 QDFNKEVQRLVNREQDEEFIFALLNHARDIGFTSTNIDLIYGLPKQTPESFAFTLKRVTE 231
Query: 195 YSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDEN-AVMQDKITSLLKNNYY-------- 243
+P LS+++ P + K +PS + ++Q+ I SL + Y
Sbjct: 232 LNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVSLTQAGYQFIGMDHFA 291
Query: 244 -KNYEISAYSKTGYESQHNLNYWKFG--DYLGIGAGSHSKLSFPNYIIRQIR----YKNP 296
+ E++ + G ++ Y G D LG+G + S + Y+ Q Y+
Sbjct: 292 RPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIG-DGYMQNQKELKRYYQQV 350
Query: 297 NIYLKNIFSGNSIAKSKKIEK---KCLIFEFML--NALRLKDGFSPNLFFERTGINIKII 351
+ ++ G ++ + I + K LI F L NA+ + G F E +++++
Sbjct: 351 DERGNALWRGITLTRDDCIRRDVIKALICNFRLDFNAVEQQWGLH---FAEYFAEDLQLL 407
Query: 352 ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
K+ GL+ + K I+ T+ GR + ++ F
Sbjct: 408 SPLAKD----GLVDISEKGIQVTAKGRLLIRNICMCF 440
>sp|P32131|HEMN_ECOLI Oxygen-independent coproporphyrinogen-III oxidase OS=Escherichia
coli (strain K12) GN=hemN PE=1 SV=4
Length = 457
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 179/398 (44%), Gaps = 34/398 (8%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLY+H P+C K C +C + ++ +YL+AL ++ P+ R + + G
Sbjct: 52 PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWG 111
Query: 76 GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTP+ ++ + L+K +++ F + I++E +P E++ G NRLS+G+
Sbjct: 112 GGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGV 171
Query: 136 QSFNNKYLNILGRTHDSK----QAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNY 191
Q FN + ++ R D + +A EI F + N+DLIY LP QT L
Sbjct: 172 QDFNKEVQRLVNREQDEEFIFALLNHAREIG---FTSTNIDLIYGLPKQTPESFAFTLKR 228
Query: 192 AIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDEN-AVMQDKITSLLKNNYY----- 243
+ +P LS+++ P + K +PS + ++Q+ I L ++ Y
Sbjct: 229 VAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMD 288
Query: 244 ----KNYEISAYSKTGYESQHNLNYWKFG--DYLGIGAGSHSKLSFPNYIIRQIR----Y 293
+ E++ + G ++ Y G D LG+G + S + Y Q Y
Sbjct: 289 HFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIG-DCYAQNQKELKQYY 347
Query: 294 KNPNIYLKNIFSGNSIAKSKKIEK---KCLIFEFMLNALRLKDGFSPNLFFERTGINIKI 350
+ + ++ G ++ + I + K LI F L+ ++ + + F + ++K+
Sbjct: 348 QQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQWDLH-FADYFAEDLKL 406
Query: 351 IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
+ K+ GL+ + K I+ T+ GR + ++ F
Sbjct: 407 LAPLAKD----GLVDVDEKGIQVTAKGRLLIRNICMCF 440
>sp|P74132|HEMN_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=hemN PE=3 SV=1
Length = 466
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 176/402 (43%), Gaps = 37/402 (9%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII-LNRKIHTIFI 74
PLSLY H P+C K C +C ++ + + YL+A+ + L P++ R + +
Sbjct: 56 PLSLYCHIPFCAKACYFCGCNTIITQHKPAVDPYLKAVAKQIALVAPLVDQQRPVQQLHW 115
Query: 75 GGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIG 134
GGGTP+ ++ ++L I +N I++E NP + + + +G NR+S G
Sbjct: 116 GGGTPNYLTLEQAEFLFNTITDAFPLAENAEISIEINPCYVDKDYIFALRQLGFNRISFG 175
Query: 135 IQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAI 193
IQ FN++ + R ++ +Q F++ N+DLIY LP+Q L+ L
Sbjct: 176 IQDFNSQVQQAVNRIQPEAMLFQVMDWIRQANFDSVNVDLIYGLPHQNLATFRETLRKTA 235
Query: 194 QYSPPHLSLYSLTIEP--NTYFFKYPPLSMPSNDEN-AVMQDKITSLLKNNYY------- 243
Q +P +++++ P K P ++P +E +MQ I L + Y
Sbjct: 236 QLNPDRIAVFNFAYVPWLKPVQKKMPESALPPAEEKLKIMQATIADLTEQGYVFIGMDHF 295
Query: 244 --KNYEISAYSKTGYESQHNLNYWKF---GDYLGIGAGSHSKLS---FPNYIIRQIRYKN 295
+ E++ + G E N + D LG G S S L N+ + Y
Sbjct: 296 AKPDDELAIAQRRG-ELHRNFQGYTTQPESDLLGFGITSISMLQDVYAQNHKTLKAFYNA 354
Query: 296 PNIYLKNIFSGNSIAKSKKIEK---KCLIFEFMLNALRLKD----GFSP--NLFFERTGI 346
+ + I G +++ I + K L+ +F L+A L+ GF N +F +
Sbjct: 355 LDREVMPIEKGFKLSQDDLIRRTVIKELMCQFKLSAQELESKYNLGFDCDFNDYFAKELS 414
Query: 347 NIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
+ ++E+ GLL+R ++ T GR + ++ +F
Sbjct: 415 ALDVLEAD-------GLLRRLGDGLEVTPRGRILIRNIAAVF 449
>sp|Q9ZLH0|HEMN_HELPJ Oxygen-independent coproporphyrinogen-III oxidase OS=Helicobacter
pylori (strain J99) GN=hemN PE=3 SV=1
Length = 457
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 189/415 (45%), Gaps = 36/415 (8%)
Query: 1 MKYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELS 60
+K FN+ +K PLSLY H P+C C +C I ++ EKK + EL+
Sbjct: 37 LKTAFFNHDNLKNPMPLSLYTHLPFCRSACYFCACSV--IYTSLEEKKVRYISYLKKELA 94
Query: 61 L---PIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL-FKKNISITLEANPSTFE 116
L + NR++ GGGTP+ S LD + ++I+++ F ++I ++ E +P F
Sbjct: 95 LLKNAMDTNREVAQFHYGGGTPTFFSPPQLDEITQSIQEVFPNFSQDIEMSCEIDPRHFT 154
Query: 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175
E + G NRLS G+Q F+ + + R + + ++++A+ Y + N DLIY
Sbjct: 155 KEHMQTLFDRGFNRLSFGVQDFDLEVQKAIHRIQPFEMVQESVKLARDYGIKSINFDLIY 214
Query: 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP--NTYFFKYPPLSMPSNDENAVMQDK 233
LPNQT + L + ++ P L++++ P K +PS + + +
Sbjct: 215 GLPNQTKEGFLKTLEWVLKLDPDRLAVFNYAHVPWVKKTMRKIDETLLPSPRDKLEILES 274
Query: 234 ITSLLKNNYYKNYEISAYSKTGYE-------SQHNLNYW-----KFGDYLGIGA---GSH 278
+ S L+ Y+ + ++K+ E ++ N+ KF +GIG G
Sbjct: 275 LISFLEKANYQMIGMDHFAKSDNELYLALQKAELRRNFQGYTTKKFTQTIGIGVTSIGEG 334
Query: 279 SKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKK-IEKKCLIFEFM----LNALRLKD 333
S NY + + Y + L ++ +A S++ + +K +I + M L+ ++++
Sbjct: 335 SDYYTQNY--KDLHYYEKALDLGHLPVERGVALSQEDVLRKEVIMQMMSNLKLDYSKIEE 392
Query: 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
FS + + K KLK E+ GLL N+K + T G + ++ F
Sbjct: 393 KFSIDF-----KAHFKKELEKLKPYEEAGLLSFNSKGFEMTRTGGMLVRNMAMEF 442
>sp|O67886|HEMN_AQUAE Oxygen-independent coproporphyrinogen-III oxidase OS=Aquifex
aeolicus (strain VF5) GN=hemN PE=3 SV=1
Length = 456
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 27/293 (9%)
Query: 10 YIKKL-------PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVEL-SL 61
Y+K+L PLSLY H P+C ++C YC + + E+ YLE + +++L S
Sbjct: 38 YVKRLIKSNERKTPLSLYFHIPFCEQRCLYCGCNVIISHRKGIEEPYLERVCREMDLVSQ 97
Query: 62 PIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFH 121
+ +RK+ + GGGTP+ +S + + ++ I+K F N I++E +P E+
Sbjct: 98 YLDKDRKVIQLHWGGGTPNYLSPEQIKWFMEEIRKRFEFGDNAEISIELDPRYLTDEQIK 157
Query: 122 SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ 180
+ G NR+S+G+Q + K + R + K +E ++ F + NLDLIY LP Q
Sbjct: 158 AIKDAGFNRISLGVQDLDPKVQQAVNRVQPYELIKEKMEKLREAGFESINLDLIYGLPYQ 217
Query: 181 TLSELMLDLNYAIQYSPPHLSLYSLT----IEPNTYFFKYPPLSMPSNDENAVMQDKITS 236
T + I+ +P ++ YS ++P+ P ++PS +E + + + +
Sbjct: 218 TKESFEKTVEKVIELNPDRIATYSFAYIPQVKPHQQLL--PKEALPSAEEKLRIFEMVIN 275
Query: 237 LLKNNYYKNYEISAYSKTGYE---SQHNLNYWK-FGDY--------LGIGAGS 277
+ Y + ++K E +Q W+ F Y LG GA S
Sbjct: 276 KFQEAGYVYIGMDHFAKPEDELAVAQRKGELWRNFQGYTTKKGVELLGFGATS 328
>sp|O25376|HEMN_HELPY Oxygen-independent coproporphyrinogen-III oxidase OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=hemN PE=3 SV=1
Length = 457
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 192/417 (46%), Gaps = 40/417 (9%)
Query: 1 MKYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELS 60
+K FN+ +K PLSLY H P+C C +C I ++ EKK + EL+
Sbjct: 37 LKTAFFNHDNLKNPMPLSLYTHLPFCRSACYFCACSV--IYTSLEEKKIRYISYLKKELA 94
Query: 61 L---PIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL-FKKNISITLEANPSTFE 116
L + NR++ GGGTP+ S LD + ++I+++ F K+I ++ E +P F
Sbjct: 95 LLKNAMDTNREVAQFHYGGGTPTFFSPIQLDEITQSIQEVFPNFSKDIEMSCEIDPRHFT 154
Query: 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175
E + G NRLS G+Q F+ + + R + + ++++A+ Y + N DLIY
Sbjct: 155 KEHMQTLFDRGFNRLSFGVQDFDFEVQKAIHRIQPFEMVQESVKLARDYGIKSINFDLIY 214
Query: 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP--NTYFFKYPPLSMPSNDENAVMQDK 233
LPNQT + L + ++ P L++++ P K +PS + + +
Sbjct: 215 GLPNQTKEGFLKTLEWVLKLDPDRLAVFNYAHVPWVKKTMRKIDETLLPSLRDKLEILES 274
Query: 234 ITSLLKNNYYKNYEISAYSKTGYE-------SQHNLNYW-----KFGDYLGIGAGSHSKL 281
+ S L+ Y+ + ++K+ E ++ N+ KF +GIG S +
Sbjct: 275 LISFLEKANYQMIGMDHFAKSDNELYLALQKAELRRNFQGYTTKKFTQTIGIGVTSIGEG 334
Query: 282 SFPNYIIRQIRYKNPNIYLKNIFSGN-----SIAKSKK-IEKKCLIFEFM----LNALRL 331
+Y + YK+ + Y K + G+ +A S++ + +K +I + M L+ ++
Sbjct: 335 G--DYYTQN--YKDLHHYEKALDLGHLPVERGVALSQEDVLRKEVIMQMMSNLKLDYSKI 390
Query: 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
++ FS + + K KLK E+ GLL N+K + T G + ++ F
Sbjct: 391 EEKFSVDF-----KAHFKKELEKLKPYEEAGLLSFNSKGFEMTKTGGMLVRNMAMEF 442
>sp|P95651|HEMN_RHOS5 Oxygen-independent coproporphyrinogen-III oxidase OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=hemN PE=3
SV=2
Length = 452
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 128/266 (48%), Gaps = 17/266 (6%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVEL---SLPIILNRKIHTI 72
P+S+YIH P+C + C +C + + + Y+ LL ++EL LP + K +
Sbjct: 50 PISVYIHVPFCERLCWFCACRTQGTQTLAPVEAYVGTLLQELELVKKHLPAGV--KAGRL 107
Query: 73 FIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS 132
GGGTP+++S + L + IK ++ F ++ ++E +P + K + S G+NR S
Sbjct: 108 HWGGGTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEEGMNRAS 167
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNY 191
IGIQ F + + +GR + + +E ++Y ++ N DL+Y LP+Q L ++
Sbjct: 168 IGIQDFTDIVQSAIGREQPFENTRACVETLRRYGVHSLNTDLVYGLPHQNRESLAATIDK 227
Query: 192 AIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251
+Q P ++++ P + K L DEN + D ++ + N +
Sbjct: 228 VLQLGPDRVAIFGYAHVP--WMAKRQKLI----DENVLPND-----MERHELANLAAKMF 276
Query: 252 SKTGYESQHNLNYWKFGDYLGIGAGS 277
++ G+E ++ + D + + A S
Sbjct: 277 TEGGFERIGIDHFARPDDSMAVAARS 302
>sp|O31381|HEMN_BRAJA Oxygen-independent coproporphyrinogen-III oxidase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=hemN PE=3 SV=2
Length = 450
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 5/206 (2%)
Query: 10 YIKKLPP---LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILN 66
++ +LP SLY+H P+C + C YC H+ ++++ Y L ++ L I
Sbjct: 38 WLSELPAGASASLYLHVPFCREMCWYCGCHTQIVRRDDLIAAYQRTLRSEIALVAETIGR 97
Query: 67 R-KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSI 125
R K+ I GGGTP++++ L+ +++ + I +E +P T + + +
Sbjct: 98 RIKVEHIHFGGGTPTIMAPEAFAELMAAMRQAFFVLPSAEIAVEIDPRTLTADMVEAMRL 157
Query: 126 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSE 184
G+NR S+G+QSF+ + R +Q +++ + N DLIY LP+QT++
Sbjct: 158 SGVNRASLGVQSFDPIVQRAINRIQSFEQTAAVVDMLRHAGIAGINFDLIYGLPHQTVAS 217
Query: 185 LMLDLNYAIQYSPPHLSLYSLTIEPN 210
+ + ++ +P S++ P+
Sbjct: 218 CLDTVRRSLLLAPDRFSVFGYAHVPD 243
>sp|P33770|HEMF_RHOS4 Coproporphyrinogen-III oxidase, anaerobic 1 OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=hemN PE=3 SV=3
Length = 452
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVEL---SLPIILNRKIHTI 72
P+S+Y+H P+C + C +C + + + Y+ LL ++EL LP + K +
Sbjct: 50 PISVYVHVPFCERLCWFCACRTQGTQTLAPVEAYVGTLLQELELVKQHLPAGV--KAGRL 107
Query: 73 FIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS 132
GGGTP+++S + L + IK ++ F ++ ++E +P + K + S G+NR S
Sbjct: 108 HWGGGTPTILSPELIHKLAQAIKAVIPFAEDYEFSVEIDPMMVDEPKIRALSEEGMNRAS 167
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNY 191
IGIQ F + N +GR + K +E ++Y ++ N DL+Y LP+Q L ++
Sbjct: 168 IGIQDFTDIVQNAIGREQPFENTKACVETLRRYGVHSLNTDLVYGLPHQNRESLAATIDK 227
Query: 192 AIQYSPPHLSLYS 204
+ P ++++
Sbjct: 228 VLSLRPDRVAIFG 240
>sp|Q796V8|HEMZ_BACSU Oxygen-independent coproporphyrinogen-III oxidase 2 OS=Bacillus
subtilis (strain 168) GN=hemZ PE=1 SV=1
Length = 501
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 26/287 (9%)
Query: 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII------LNRKIH 70
+S+YI P+C KC YC F +Y I+ + + + L + + I + K+
Sbjct: 171 VSIYIGIPFCPTKCAYCTFPAYAIQ---GQAGRVGSFLWGLHYEMQKIGEWLKEHDVKVT 227
Query: 71 TIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNI-SITLEAN-PSTFEIEKFHSYSIIGI 128
TI+ GGGTP+ I+ +D L + + + KNI IT+EA P T EK + I
Sbjct: 228 TIYFGGGTPTSITAEEMDLLYEEMVRSFPDVKNIREITVEAGRPDTITEEKLAVLNKYDI 287
Query: 129 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELML 187
+R+SI QS+ N+ L +GR H ++ +++Q+ NN N+DLI LP + + E
Sbjct: 288 DRISINPQSYENETLKAIGRHHTVEETIEKYHLSRQHGMNNINMDLIIGLPGEGVKEFRH 347
Query: 188 DLNYAIQYSPPHLSLYSLTIEPNTYFFK-YPPLSMPSNDENAVMQDKITSLLKNNYY--- 243
L+ + P L++++L+ + + + + +E + M + + K + Y
Sbjct: 348 SLSETEKLMPESLTVHTLSFKRASEMTRNKHKYKVAGREEVSQMMEDAVAWTKEHGYVPY 407
Query: 244 ---------KNYEISAYSKTGYESQHNLNYW-KFGDYLGIGAGSHSK 280
N E YS G ES +N+ + +GIG G+ SK
Sbjct: 408 YLYRQKNILGNLENVGYSLPGQESIYNIMIMEEVQTIIGIGCGAASK 454
>sp|P77915|HEMN_PSEAE Oxygen-independent coproporphyrinogen-III oxidase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=hemN PE=3 SV=2
Length = 460
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 166/402 (41%), Gaps = 39/402 (9%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVEL-SLPIILNRKIHTIFI 74
PLSLY+H P+C C YC + K YL L+ ++E+ S + + + +
Sbjct: 53 PLSLYVHIPFCANICYYCACNKVITKDRGRSAPYLARLVREIEIVSRHLSREQVVEQLHF 112
Query: 75 GGGTPSLISDTGLDYLLKNIKKL--LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS 132
GGGTP+ +S L L+ ++ LL + +E +P + +G NR+S
Sbjct: 113 GGGTPTFLSPGQLRELMSQLRTHLNLLDDDSGDYGIEIDPREADWSTMGLLRELGFNRVS 172
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ-YFNNFNLDLIYALPNQTLSELMLDLNY 191
+G+Q F+ + + R ++ + +E A+ + + NLDLIY LP QT ++
Sbjct: 173 LGVQDFDMEVQKAVNRMQTPEETRTIVEAARTLQYRSINLDLIYGLPKQTPDSFARTVDE 232
Query: 192 AIQYSPPHLSLYSLTIEPNTYF--FKYPPLSMPSNDENAVMQDKITSLLKNNYYK----- 244
I P LS+++ P + + +PS + M + T L Y+
Sbjct: 233 VIALQPDRLSVFNYAHLPERFMPQRRINADDLPSPGQKLEMLQRTTEQLAAAGYRYIGMD 292
Query: 245 -----NYEISAYSKTGYESQHNLNYWKFG--DYLGIGAGSHSKLS---------FPNYII 288
+ E+++ + G ++ Y G D +G+G + S++ +Y
Sbjct: 293 HFALPDDELASAQEDGTLQRNFQGYTTHGHCDLVGLGVSAISQIGDLYSQNSSDINDY-- 350
Query: 289 RQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLI--FEFMLNALRLKDGFSPNLFFERTGI 346
Q N + ++ NS + ++ + LI FE + + G +F
Sbjct: 351 -QTSLDNGQLAIRRGLHCNSDDRVRRAVIQQLICHFELAFEDIETEFGIDFRSYFAELWP 409
Query: 347 NIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
+++ + GL++ + K I TS GR + + +F
Sbjct: 410 DLERFAAD-------GLIRLDAKGIDITSSGRLLVRSICMLF 444
>sp|Q51676|HEMN_PARDP Oxygen-independent coproporphyrinogen-III oxidase OS=Paracoccus
denitrificans (strain Pd 1222) GN=hemN PE=3 SV=1
Length = 451
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 2/189 (1%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVE-LSLPIILNRKIHTIFIGG 76
SLY+H P+C + C +C + + + + Y +ALL +++ L + ++ + GG
Sbjct: 52 SLYMHVPFCRRLCWFCACRTQGTQSDEPVRAYAKALLAELDMLKSALAPGVRLSRLHWGG 111
Query: 77 GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
GTP+L+ + + + + ++E +P+ + + + + G+NR SIG+Q
Sbjct: 112 GTPTLMPAEMMRLVAGAVLDAFPLAEGAEFSVEIDPNEIDEARMDALAEAGLNRASIGVQ 171
Query: 137 SFNNKYLNILGRTHDSKQAKYAIE-IAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
F+ + I+GR + K A++ I + + N D++Y LP+Q + + +
Sbjct: 172 DFDPEIQKIIGREQSFEVTKRAVDMIRDRGIASLNADILYGLPHQDPHRIAESVQKLLAL 231
Query: 196 SPPHLSLYS 204
SP ++LY
Sbjct: 232 SPDRVALYG 240
>sp|O34162|HEMN_CUPNH Oxygen-independent coproporphyrinogen-III oxidase OS=Cupriavidus
necator (strain ATCC 17699 / H16 / DSM 428 / Stanier
337) GN=hemN PE=3 SV=2
Length = 494
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII-LNRKIHTIFI 74
PLSLY+H P+C C YC + + + +Y+ L ++ L + R++
Sbjct: 65 PLSLYLHIPFCENICYYCGCNKIITRDHGRSARYVNYLGREMALVADRLGPRRQVLQSHW 124
Query: 75 GGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIG 134
GGGTP+ + + ++ + + ++E +P + + + +G NR+S+G
Sbjct: 125 GGGTPTFLDPGEMRRVMALLHEHFELAAEGEHSIEIDPRRVDHARMALLAELGFNRVSLG 184
Query: 135 IQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAI 193
+Q F+ + + R ++ + ++ A+ F + +LDLIY LP+QT + ++ +
Sbjct: 185 VQDFDPEVQQAIHRIQPFEETRAVVDAARTLGFRSVSLDLIYGLPHQTAARFGRTIDQVL 244
Query: 194 QYSPPHLSLYSLTIEPNTY 212
P LS+YS P+ +
Sbjct: 245 ALRPDRLSVYSYAHLPHVF 263
>sp|P51008|HEMZ_RHOS4 Coproporphyrinogen-III oxidase, anaerobic 2 OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=hemZ PE=3 SV=1
Length = 450
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 41/351 (11%)
Query: 10 YIKKLPP---LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEAL-----LIDVELSL 61
+I +P +SLY+H P+C + C +C + + + Y AL L+ L+
Sbjct: 41 WISSIPAGGSISLYLHVPFCRRLCWFCACRTQGTSSDAPVRAYAAALKSELALLRARLAP 100
Query: 62 PIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFH 121
+ L R + GGGTP+L+ T + L I+ + ++E +P+ + +
Sbjct: 101 GVRLAR----MHWGGGTPTLLPPTLIHELALAIRDAVPSDAETDFSVEIDPTEIDAARLD 156
Query: 122 SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIE-IAKQYFNNFNLDLIYALPNQ 180
+ G+ R+SIG+Q F+ +GR + + E + + + D++Y LP+Q
Sbjct: 157 ALFEAGMTRVSIGVQDFDPLIQQSIGREQSFELTQRLTEDLRHRGLMGLDADILYGLPHQ 216
Query: 181 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY--PPLSMPSNDENAVMQDKITSLL 238
T + + + SP +++ P + P S+P +E + + +L+
Sbjct: 217 TAPGVADSVQKLLSLSPDRVAVLGYAHVPAVSRRQLMIPTASIPGPEERLDLFETARTLI 276
Query: 239 KNNYYKNYEISAYSKTGYESQHNLNYWK----FGDY--------LGIGAGSHSKLSFPNY 286
+ Y+ + +++ G H + F Y +G+GA + S+ FP
Sbjct: 277 LWDGYQQVGLDHFARAGDPLAHAHACGRLCRSFQGYTDDRAEVLIGLGASAISR--FPQG 334
Query: 287 I----------IRQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLN 327
+R IR + ++ S + + IE+ L+ EF ++
Sbjct: 335 FTQNAPSTSDHLRAIRSGRFSTARGHVLSDEDRLRGRMIEQ--LLCEFRIS 383
>sp|P55477|Y4HJ_RHISN Uncharacterized protein y4hJ OS=Rhizobium sp. (strain NGR234)
GN=NGR_a03400 PE=4 SV=1
Length = 260
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGI 128
+ + GGGTP++I L+ +++ F+K +I +E P TF E + +
Sbjct: 64 VSDVHFGGGTPTIIKPEDFLALMDLLRRSFAFRKTATIAVEIEPRTFTAEMAEALGAAEV 123
Query: 129 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIE-IAKQYFNNFNLDLIYALPNQTLSELML 187
+ +S+G+QSF+ R Q AIE + + + N DL+Y LP+QT+ +
Sbjct: 124 SHVSLGVQSFDPIVQKATNRVQRKAQTTAAIENLRRIGISRINFDLMYGLPHQTVQSCVQ 183
Query: 188 DLNYAIQYSPPHLSLY 203
A+ P L+++
Sbjct: 184 SATAAVAMRPDRLAVF 199
>sp|P95506|HEMN_PASHA Oxygen-independent coproporphyrinogen-III oxidase (Fragment)
OS=Pasteurella haemolytica GN=hemN PE=3 SV=1
Length = 146
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLY+H P+C K C +C + + + YL+ L +++ P+ NR + I G
Sbjct: 50 PLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRLVTQIHWG 109
Query: 76 GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANP 112
GTP+ + + L++ ++ + I++E +P
Sbjct: 110 RGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDP 146
>sp|O31067|HEMN_THEVL Oxygen-independent coproporphyrinogen-III oxidase (Fragment)
OS=Thermosynechococcus vulcanus GN=hemN PE=3 SV=1
Length = 325
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 99 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 158
L K+ I++E +P + F +G NR+S G+Q F+ + + R
Sbjct: 3 LMTKDAEISIEVSPRYINGDYFLRGRKLGFNRISFGVQDFDPQVQLAVNRVQRETMFFQV 62
Query: 159 IE-IAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF--K 215
+E I F + N+DLIY LP QT+ + ++ P +++++ PN +
Sbjct: 63 MEWIRAAEFESVNIDLIYGLPYQTVQSFEATIAKTLRLDPDRIAVFNFAYLPNLKPIQKR 122
Query: 216 YPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
P ++P + + ++ L + Y+ + ++K
Sbjct: 123 IDPTTLPDSATKLTILQRVIERLTSQGYRYIGMDHFAK 160
>sp|Q8TWU9|Y932_METKA Uncharacterized protein MK0932 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0932 PE=4
SV=1
Length = 523
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLD-- 188
+S+G+++ + + L +G+ K+A AI + ++ + +Y LP QT+ L
Sbjct: 325 VSVGVETGDPRLLRAIGKPSTLKEALRAIRLLRRAGLRPHAYFVYGLPGQTMKSAKLTAK 384
Query: 189 -LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDE 226
+ A++ +++Y P + F +PP P NDE
Sbjct: 385 AMKRAVEMGAEKITVYRFRPIPASAFGDFPPGPSPRNDE 423
>sp|Q57910|Y486_METJA Uncharacterized protein MJ0486 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0486 PE=4 SV=1
Length = 322
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 98 LLFKKNISITLEANPSTFEIEKF--------HSYSIIGINRLSIGIQSFNNKYLNILGRT 149
L +K+ I +++ P E EK + Y I + +G+QS + K L IL R
Sbjct: 123 LSYKEVIGLSIGTRPDCLEKEKLDILAEYVENGYDI----WIDLGVQSMHQKTLEILNRG 178
Query: 150 HDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELM 186
HD AI+ + +I LP ++ E+M
Sbjct: 179 HDVSDIIKAIKDCHKRGIKVCGHVILGLPGESWKEMM 215
>sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Caenorhabditis elegans
GN=elpc-3 PE=3 SV=2
Length = 547
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 21/149 (14%)
Query: 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 161
K I IT+E P + + G RL IG+QS R H K +
Sbjct: 210 KCIGITIETRPDYCLPRHLNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFHM 269
Query: 162 AKQYFNNFNLDLIYALPNQTLS---ELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK--- 215
AK + ++ LPN L E L+L + + P L LY + T ++
Sbjct: 270 AKDTGYKVVIHMMPDLPNVGLERDKEQFLELFESPAFRPDGLKLYPTLVIRGTGLYELWK 329
Query: 216 ------YPPLSMPSNDENAVMQDKITSLL 238
YPP +V+ D I ++L
Sbjct: 330 TGRYQSYPP---------SVLVDLIATIL 349
>sp|B5XZQ0|MIAB_KLEP3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Klebsiella pneumoniae (strain 342) GN=miaB PE=3 SV=1
Length = 474
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I ++ + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLREARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Caenorhabditis briggsae
GN=elpc-3 PE=3 SV=1
Length = 548
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 21/149 (14%)
Query: 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 161
K I IT+E P + + G RL IG+QS R H K +
Sbjct: 210 KCIGITIETRPDYCLPRHLNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFHM 269
Query: 162 AKQYFNNFNLDLIYALPNQTLS---ELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK--- 215
AK + ++ LPN L E L+L + + P L LY + T ++
Sbjct: 270 AKDTGYKVVIHMMPDLPNVGLERDKEQFLELFESPAFRPDGLKLYPTLVIRGTGLYELWK 329
Query: 216 ------YPPLSMPSNDENAVMQDKITSLL 238
YPP +V+ D I ++L
Sbjct: 330 TGRYQSYPP---------SVLVDLIATIL 349
>sp|A6T6B5|MIAB_KLEP7 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=miaB PE=3 SV=2
Length = 474
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I ++ + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLREARPDIQISSDFIVGFPGETTEDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|Q58882|Y1487_METJA Uncharacterized methyltransferase MJ1487 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1487 PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL 185
L IG QS + K L + R H + A+ +A++ ++D I+ LP +T ++
Sbjct: 294 LVIGAQSGSEKVLELCHRGHTVEDVYNAVRVARKAGLGVDVDFIFGLPGETEEDV 348
>sp|Q9RCI2|MIAB_SALTY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=miaB PE=1 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|Q8Z8G5|MIAB_SALTI (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella typhi GN=miaB PE=3 SV=2
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|B4TPZ0|MIAB_SALSV (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella schwarzengrund (strain CVM19633) GN=miaB
PE=3 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|A9MUH8|MIAB_SALPB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=miaB PE=3 SV=2
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|B4SYN0|MIAB_SALNS (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella newport (strain SL254) GN=miaB PE=3 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|B4TB74|MIAB_SALHS (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella heidelberg (strain SL476) GN=miaB PE=3
SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|B5FNB2|MIAB_SALDC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella dublin (strain CT_02021853) GN=miaB PE=3
SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|Q57RQ7|MIAB_SALCH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella choleraesuis (strain SC-B67) GN=miaB PE=3
SV=2
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|B5EZB2|MIAB_SALA4 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella agona (strain SL483) GN=miaB PE=3 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|B5BCD1|MIAB_SALPK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella paratyphi A (strain AKU_12601) GN=miaB
PE=3 SV=2
Length = 474
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|Q5PLT0|MIAB_SALPA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=miaB PE=3 SV=2
Length = 474
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
>sp|Q1REQ5|MIAB_ECOUT (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Escherichia coli (strain UTI89 / UPEC) GN=miaB PE=3
SV=1
Length = 474
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL--DLIYALPNQTLSE---- 184
L + +QS +++ LN++GRTH + + K I + + + D I P +T +
Sbjct: 262 LHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKT 321
Query: 185 --LMLDLNYAIQYS 196
L+ D+N+ + YS
Sbjct: 322 MKLIADVNFDMSYS 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,443,802
Number of Sequences: 539616
Number of extensions: 6374815
Number of successful extensions: 15455
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 15343
Number of HSP's gapped (non-prelim): 120
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)