Query psy2383
Match_columns 391
No_of_seqs 289 out of 2209
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:36:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06582 coproporphyrinogen II 100.0 3.7E-87 8.1E-92 654.9 42.6 375 13-389 8-389 (390)
2 PRK08898 coproporphyrinogen II 100.0 6.9E-85 1.5E-89 641.7 44.6 378 11-389 14-393 (394)
3 PRK09057 coproporphyrinogen II 100.0 2.4E-85 5.2E-90 642.5 40.7 374 14-390 2-380 (380)
4 PRK07379 coproporphyrinogen II 100.0 5.9E-85 1.3E-89 642.9 42.3 368 15-389 9-393 (400)
5 COG0635 HemN Coproporphyrinoge 100.0 4.8E-85 1E-89 641.9 41.3 369 16-389 34-410 (416)
6 PRK05660 HemN family oxidoredu 100.0 3.4E-84 7.5E-89 633.5 43.4 371 15-390 5-377 (378)
7 PRK06294 coproporphyrinogen II 100.0 3.9E-84 8.5E-89 631.4 41.0 363 12-389 2-370 (370)
8 PRK05628 coproporphyrinogen II 100.0 1E-82 2.2E-87 624.3 41.2 365 15-390 1-375 (375)
9 PRK09058 coproporphyrinogen II 100.0 1.5E-82 3.2E-87 634.2 40.2 369 14-390 59-437 (449)
10 PRK05799 coproporphyrinogen II 100.0 5.2E-81 1.1E-85 612.6 42.0 366 15-389 2-373 (374)
11 TIGR00539 hemN_rel putative ox 100.0 2.5E-80 5.3E-85 604.0 39.6 357 17-379 1-360 (360)
12 PRK08599 coproporphyrinogen II 100.0 6.9E-80 1.5E-84 605.0 41.8 369 16-390 1-375 (377)
13 PRK08446 coproporphyrinogen II 100.0 1.8E-79 3.8E-84 594.8 38.0 348 18-390 2-350 (350)
14 PRK05904 coproporphyrinogen II 100.0 5.2E-79 1.1E-83 589.9 37.1 346 13-389 3-353 (353)
15 PRK08208 coproporphyrinogen II 100.0 1.1E-77 2.3E-82 597.1 42.0 373 14-390 37-417 (430)
16 PRK13347 coproporphyrinogen II 100.0 3.8E-77 8.3E-82 596.8 42.3 372 13-388 47-438 (453)
17 PRK09249 coproporphyrinogen II 100.0 3.8E-75 8.2E-80 582.8 41.9 371 15-389 48-439 (453)
18 TIGR00538 hemN oxygen-independ 100.0 5.7E-75 1.2E-79 582.2 42.2 372 14-389 47-439 (455)
19 PRK08629 coproporphyrinogen II 100.0 6.1E-75 1.3E-79 574.8 41.6 360 14-390 50-415 (433)
20 PRK08207 coproporphyrinogen II 100.0 5.3E-65 1.1E-69 508.8 32.6 292 13-304 160-473 (488)
21 TIGR01212 radical SAM protein, 100.0 9.8E-33 2.1E-37 262.1 18.8 209 18-231 19-244 (302)
22 TIGR01211 ELP3 histone acetylt 100.0 3.2E-31 6.9E-36 265.7 21.8 146 68-215 136-307 (522)
23 PRK14334 (dimethylallyl)adenos 100.0 6.4E-29 1.4E-33 248.1 21.8 194 15-223 136-343 (440)
24 TIGR02026 BchE magnesium-proto 100.0 5.7E-30 1.2E-34 259.4 13.4 218 26-255 203-423 (497)
25 PRK14333 (dimethylallyl)adenos 100.0 1.9E-27 4.2E-32 238.0 19.7 197 17-224 148-362 (448)
26 PRK14327 (dimethylallyl)adenos 100.0 1.1E-26 2.4E-31 233.5 23.0 197 16-224 211-419 (509)
27 TIGR03471 HpnJ hopanoid biosyn 100.0 2.2E-27 4.8E-32 239.7 18.1 179 26-215 206-385 (472)
28 PRK14329 (dimethylallyl)adenos 99.9 1.1E-26 2.3E-31 233.3 20.5 199 18-226 169-383 (467)
29 TIGR01579 MiaB-like-C MiaB-lik 99.9 1.2E-26 2.5E-31 230.7 19.6 182 26-218 148-340 (414)
30 PRK14330 (dimethylallyl)adenos 99.9 1.1E-26 2.4E-31 231.9 19.5 204 17-229 140-353 (434)
31 PRK14332 (dimethylallyl)adenos 99.9 4E-26 8.8E-31 227.7 22.6 198 18-226 155-361 (449)
32 PRK14331 (dimethylallyl)adenos 99.9 1.5E-26 3.3E-31 231.0 19.1 198 18-226 147-354 (437)
33 PRK07094 biotin synthase; Prov 99.9 4.8E-26 1E-30 219.4 21.3 203 24-241 47-250 (323)
34 TIGR01210 conserved hypothetic 99.9 3.1E-26 6.7E-31 218.4 19.2 189 26-224 25-232 (313)
35 PRK14340 (dimethylallyl)adenos 99.9 3.9E-26 8.4E-31 227.8 20.1 188 18-215 150-347 (445)
36 PRK14335 (dimethylallyl)adenos 99.9 7.2E-26 1.6E-30 226.8 22.1 191 26-224 162-365 (455)
37 PRK14328 (dimethylallyl)adenos 99.9 8.8E-26 1.9E-30 225.6 20.9 212 16-239 146-368 (439)
38 PRK14325 (dimethylallyl)adenos 99.9 1E-25 2.2E-30 225.8 20.9 208 18-237 148-368 (444)
39 TIGR01574 miaB-methiolase tRNA 99.9 1.2E-25 2.6E-30 224.6 20.9 199 17-226 145-356 (438)
40 PRK14337 (dimethylallyl)adenos 99.9 2E-25 4.3E-30 223.2 22.2 198 17-224 148-356 (446)
41 PRK14338 (dimethylallyl)adenos 99.9 3.4E-25 7.4E-30 222.2 22.1 194 15-218 153-357 (459)
42 PRK14336 (dimethylallyl)adenos 99.9 3.8E-25 8.3E-30 219.3 21.7 199 16-224 123-332 (418)
43 TIGR00089 RNA modification enz 99.9 1.8E-25 3.9E-30 223.2 19.4 190 19-218 139-341 (429)
44 PRK14339 (dimethylallyl)adenos 99.9 7.7E-25 1.7E-29 217.3 21.3 197 17-224 127-337 (420)
45 PRK14326 (dimethylallyl)adenos 99.9 7.4E-25 1.6E-29 221.3 21.2 195 19-223 159-363 (502)
46 TIGR01125 MiaB-like tRNA modif 99.9 8.2E-24 1.8E-28 211.1 21.5 190 19-218 137-337 (430)
47 COG0621 MiaB 2-methylthioadeni 99.9 1.1E-23 2.4E-28 205.5 19.6 195 17-224 144-352 (437)
48 COG1243 ELP3 Histone acetyltra 99.9 3.1E-23 6.6E-28 197.6 21.6 167 67-235 133-322 (515)
49 COG1242 Predicted Fe-S oxidore 99.9 1.2E-23 2.6E-28 188.6 17.3 218 15-237 22-255 (312)
50 smart00729 Elp3 Elongator prot 99.9 9.2E-23 2E-27 183.5 23.1 197 19-218 3-202 (216)
51 TIGR01578 MiaB-like-B MiaB-lik 99.9 7.5E-23 1.6E-27 203.3 19.6 191 17-217 133-334 (420)
52 PRK14862 rimO ribosomal protei 99.9 5E-22 1.1E-26 198.3 21.6 186 19-217 141-347 (440)
53 PRK06256 biotin synthase; Vali 99.9 1.2E-21 2.5E-26 189.9 19.6 205 19-239 61-269 (336)
54 TIGR00433 bioB biotin syntheta 99.9 2.4E-20 5.2E-25 177.6 21.5 202 23-241 36-242 (296)
55 PRK09240 thiH thiamine biosynt 99.9 1.6E-20 3.6E-25 183.3 19.7 203 23-243 81-294 (371)
56 TIGR02351 thiH thiazole biosyn 99.8 6.9E-20 1.5E-24 178.7 17.5 210 16-243 70-293 (366)
57 TIGR03551 F420_cofH 7,8-dideme 99.8 1.3E-19 2.7E-24 175.8 18.8 208 21-238 41-268 (343)
58 cd01335 Radical_SAM Radical SA 99.8 3.7E-19 8E-24 158.0 18.3 179 25-214 6-187 (204)
59 TIGR00423 radical SAM domain p 99.8 1.4E-18 3E-23 166.3 18.8 208 21-239 7-234 (309)
60 TIGR03699 mena_SCO4550 menaqui 99.8 5E-19 1.1E-23 171.6 15.1 211 19-239 41-267 (340)
61 PRK08445 hypothetical protein; 99.8 3E-18 6.5E-23 165.7 19.2 221 17-249 37-280 (348)
62 PRK06245 cofG FO synthase subu 99.8 1.6E-18 3.4E-23 167.9 16.4 208 17-240 10-241 (336)
63 PRK08508 biotin synthase; Prov 99.8 6.7E-18 1.5E-22 158.9 18.8 200 24-239 15-218 (279)
64 TIGR03700 mena_SCO4494 putativ 99.8 3.4E-18 7.5E-23 166.1 16.8 216 21-249 50-284 (351)
65 PRK09613 thiH thiamine biosynt 99.8 1.8E-17 3.8E-22 164.8 21.0 214 19-243 88-313 (469)
66 COG1032 Fe-S oxidoreductase [E 99.8 3.3E-18 7.2E-23 173.6 15.4 195 19-217 200-405 (490)
67 PRK06267 hypothetical protein; 99.8 1.9E-17 4E-22 160.7 19.3 197 24-240 35-236 (350)
68 PLN02389 biotin synthase 99.8 8.3E-18 1.8E-22 163.7 16.7 250 21-305 86-349 (379)
69 PRK15108 biotin synthase; Prov 99.8 1.5E-17 3.2E-22 160.9 17.8 209 20-246 47-261 (345)
70 PRK12928 lipoyl synthase; Prov 99.8 6.6E-17 1.4E-21 152.2 21.1 213 17-254 60-283 (290)
71 PRK00955 hypothetical protein; 99.7 2.3E-17 5.1E-22 167.2 16.1 189 19-214 294-525 (620)
72 TIGR03550 F420_cofG 7,8-dideme 99.7 3.2E-17 6.8E-22 157.5 15.9 210 21-249 6-244 (322)
73 PF04055 Radical_SAM: Radical 99.7 1.3E-16 2.9E-21 137.3 17.4 160 24-192 5-166 (166)
74 PRK05481 lipoyl synthase; Prov 99.7 3.8E-16 8.2E-21 147.4 21.8 216 17-254 53-275 (289)
75 TIGR00510 lipA lipoate synthas 99.7 3.4E-16 7.3E-21 147.7 19.1 215 17-254 63-286 (302)
76 PRK08444 hypothetical protein; 99.7 2.8E-16 6E-21 151.8 18.0 205 21-238 51-274 (353)
77 PRK01254 hypothetical protein; 99.7 2.8E-16 6.2E-21 158.3 17.0 195 16-217 371-610 (707)
78 COG0502 BioB Biotin synthase a 99.7 4.8E-16 1E-20 146.4 15.7 200 24-239 59-262 (335)
79 PLN02428 lipoic acid synthase 99.7 1.6E-14 3.5E-19 138.0 22.4 209 24-254 110-326 (349)
80 PRK05926 hypothetical protein; 99.7 3.5E-15 7.6E-20 145.1 18.0 214 21-247 70-303 (370)
81 PRK07360 FO synthase subunit 2 99.7 5E-15 1.1E-19 144.9 18.1 204 25-238 69-290 (371)
82 PRK13361 molybdenum cofactor b 99.6 4.7E-14 1E-18 136.2 21.8 178 18-210 15-196 (329)
83 PRK05301 pyrroloquinoline quin 99.6 9.8E-14 2.1E-18 136.7 24.4 177 14-207 13-193 (378)
84 PRK05927 hypothetical protein; 99.6 3.3E-15 7.2E-20 144.3 12.4 210 22-239 48-273 (350)
85 TIGR02109 PQQ_syn_pqqE coenzym 99.6 3.3E-13 7.2E-18 132.0 23.7 175 15-206 5-183 (358)
86 TIGR03822 AblA_like_2 lysine-2 99.6 2.2E-13 4.7E-18 130.7 20.9 191 24-238 96-294 (321)
87 COG1244 Predicted Fe-S oxidore 99.6 7.3E-13 1.6E-17 121.9 22.6 199 15-222 44-265 (358)
88 PRK00164 moaA molybdenum cofac 99.6 4E-13 8.7E-18 130.0 20.2 179 18-211 18-201 (331)
89 TIGR02668 moaA_archaeal probab 99.5 5.4E-13 1.2E-17 127.5 19.2 176 18-209 11-189 (302)
90 COG1031 Uncharacterized Fe-S o 99.5 2.8E-13 6.2E-18 129.4 16.3 186 26-217 193-415 (560)
91 TIGR02666 moaA molybdenum cofa 99.5 1.1E-12 2.3E-17 127.2 20.6 179 19-212 12-197 (334)
92 PRK09234 fbiC FO synthase; Rev 99.5 7.3E-13 1.6E-17 140.5 18.7 215 22-247 529-763 (843)
93 PLN02951 Molybderin biosynthes 99.5 2.3E-12 5E-17 126.0 19.8 181 19-214 60-245 (373)
94 PTZ00413 lipoate synthase; Pro 99.5 1.6E-11 3.4E-16 117.0 22.6 214 17-254 150-374 (398)
95 PRK09234 fbiC FO synthase; Rev 99.4 1.2E-12 2.6E-17 138.8 14.5 201 21-238 73-304 (843)
96 KOG2492|consensus 99.4 6.2E-12 1.3E-16 118.5 16.5 210 17-232 220-459 (552)
97 COG2896 MoaA Molybdenum cofact 99.4 1.1E-11 2.4E-16 116.6 17.5 172 24-209 19-192 (322)
98 TIGR02493 PFLA pyruvate format 99.4 6.2E-11 1.3E-15 109.1 21.4 176 20-207 19-199 (235)
99 TIGR01290 nifB nitrogenase cof 99.4 4.6E-11 1E-15 119.1 21.8 207 20-236 25-257 (442)
100 COG1060 ThiH Thiamine biosynth 99.4 2.3E-11 5E-16 117.8 17.4 215 15-239 55-287 (370)
101 TIGR03470 HpnH hopanoid biosyn 99.4 8.8E-11 1.9E-15 112.7 20.0 202 14-237 25-228 (318)
102 COG2100 Predicted Fe-S oxidore 99.3 3.4E-11 7.3E-16 110.8 13.9 163 26-197 117-285 (414)
103 PRK14456 ribosomal RNA large s 99.3 8.2E-10 1.8E-14 107.3 24.4 213 17-246 121-346 (368)
104 PRK14460 ribosomal RNA large s 99.3 1.3E-09 2.8E-14 105.6 25.3 200 26-245 112-324 (354)
105 PRK13762 tRNA-modifying enzyme 99.3 6.5E-10 1.4E-14 106.6 22.1 202 23-237 65-290 (322)
106 PRK11145 pflA pyruvate formate 99.3 4.9E-10 1.1E-14 103.8 19.4 214 15-244 19-243 (246)
107 PRK13758 anaerobic sulfatase-m 99.2 1.9E-09 4.2E-14 105.9 23.5 180 15-204 2-193 (370)
108 COG2516 Biotin synthase-relate 99.2 2.8E-10 6.1E-15 105.0 16.0 218 20-255 35-268 (339)
109 COG1856 Uncharacterized homolo 99.2 7.9E-10 1.7E-14 96.8 17.6 205 17-239 12-219 (275)
110 PRK13745 anaerobic sulfatase-m 99.2 5.6E-09 1.2E-13 104.0 26.3 183 15-207 11-205 (412)
111 KOG4355|consensus 99.2 1.4E-10 3.1E-15 108.7 12.2 89 130-218 300-390 (547)
112 PRK14455 ribosomal RNA large s 99.2 8.4E-09 1.8E-13 100.2 25.0 211 16-245 108-329 (356)
113 TIGR02495 NrdG2 anaerobic ribo 99.2 1.3E-09 2.8E-14 97.0 17.9 160 20-196 20-183 (191)
114 PF06969 HemN_C: HemN C-termin 99.2 3.1E-11 6.7E-16 88.2 5.9 65 315-379 1-66 (66)
115 COG0535 Predicted Fe-S oxidore 99.2 7.4E-09 1.6E-13 100.5 22.7 181 13-209 15-199 (347)
116 TIGR00238 KamA family protein. 99.1 5E-09 1.1E-13 101.0 19.4 191 24-239 121-318 (331)
117 KOG2535|consensus 99.1 2E-09 4.3E-14 99.9 15.5 146 68-215 171-337 (554)
118 COG0641 AslB Arylsulfatase reg 99.1 8E-09 1.7E-13 100.7 20.6 215 26-251 18-236 (378)
119 PRK14469 ribosomal RNA large s 99.1 4.4E-08 9.5E-13 95.1 24.6 212 11-245 95-317 (343)
120 PRK14459 ribosomal RNA large s 99.1 5.9E-08 1.3E-12 94.1 25.3 215 11-245 115-351 (373)
121 PRK14470 ribosomal RNA large s 99.1 5.8E-08 1.3E-12 93.4 24.8 216 7-245 86-314 (336)
122 TIGR03278 methan_mark_10 putat 99.1 1.4E-08 3.1E-13 99.7 20.4 210 25-246 31-248 (404)
123 PRK14463 ribosomal RNA large s 99.1 1.3E-07 2.7E-12 91.7 25.4 212 11-245 97-317 (349)
124 TIGR00048 radical SAM enzyme, 99.1 8.6E-08 1.9E-12 93.1 24.2 199 26-245 115-325 (355)
125 TIGR03820 lys_2_3_AblA lysine- 99.0 3E-08 6.4E-13 97.3 20.9 190 24-239 116-313 (417)
126 PRK14468 ribosomal RNA large s 99.0 1.5E-07 3.3E-12 91.0 25.5 214 11-245 87-313 (343)
127 PRK14466 ribosomal RNA large s 99.0 7.6E-08 1.6E-12 92.3 22.5 197 25-245 112-317 (345)
128 TIGR03821 AblA_like_1 lysine-2 99.0 3E-08 6.6E-13 95.1 19.7 198 18-240 98-302 (321)
129 PRK14462 ribosomal RNA large s 98.9 1.5E-07 3.2E-12 91.0 21.2 199 26-245 120-330 (356)
130 PRK14457 ribosomal RNA large s 98.9 6E-07 1.3E-11 86.8 24.6 208 16-245 100-322 (345)
131 PRK14467 ribosomal RNA large s 98.9 2.4E-07 5.3E-12 89.5 21.2 217 8-245 90-321 (348)
132 COG0320 LipA Lipoate synthase 98.9 1.7E-07 3.6E-12 85.0 16.6 215 16-254 70-292 (306)
133 PRK14454 ribosomal RNA large s 98.8 6.8E-07 1.5E-11 86.4 20.1 207 17-245 101-318 (342)
134 COG0731 Fe-S oxidoreductases [ 98.8 5.1E-07 1.1E-11 84.2 17.5 174 24-209 32-216 (296)
135 PRK11194 ribosomal RNA large s 98.8 4.6E-06 9.9E-11 81.3 24.6 199 26-245 113-329 (372)
136 KOG2900|consensus 98.7 5.7E-08 1.2E-12 86.7 8.4 188 19-217 87-279 (380)
137 PRK14465 ribosomal RNA large s 98.7 2.2E-06 4.8E-11 82.5 20.0 205 18-245 106-321 (342)
138 PRK14453 chloramphenicol/florf 98.7 1.2E-05 2.7E-10 77.8 23.7 208 17-245 100-322 (347)
139 PRK14461 ribosomal RNA large s 98.6 2E-05 4.3E-10 76.1 22.9 204 26-245 117-344 (371)
140 COG1180 PflA Pyruvate-formate 98.6 2.2E-05 4.8E-10 73.1 22.6 177 13-205 31-213 (260)
141 COG1625 Fe-S oxidoreductase, r 98.5 1.1E-05 2.4E-10 77.8 19.1 221 15-246 20-254 (414)
142 COG1533 SplB DNA repair photol 98.5 1.3E-05 2.8E-10 75.9 18.6 176 26-208 39-224 (297)
143 PRK14464 ribosomal RNA large s 98.5 1.5E-05 3.2E-10 76.8 19.0 204 18-245 97-309 (344)
144 COG4277 Predicted DNA-binding 98.5 5.5E-06 1.2E-10 76.0 14.8 210 24-249 62-295 (404)
145 PF13394 Fer4_14: 4Fe-4S singl 98.3 5.9E-07 1.3E-11 73.4 3.7 95 19-119 1-96 (119)
146 TIGR02494 PFLE_PFLC glycyl-rad 98.3 6.3E-05 1.4E-09 71.6 18.1 151 51-213 109-264 (295)
147 TIGR03365 Bsubt_queE 7-cyano-7 98.3 4.5E-05 9.7E-10 70.3 15.7 135 18-176 24-160 (238)
148 COG0820 Predicted Fe-S-cluster 98.2 0.00043 9.4E-09 66.1 20.7 199 26-245 111-322 (349)
149 KOG2672|consensus 98.1 2.4E-05 5.2E-10 71.1 10.7 172 19-206 114-294 (360)
150 PRK10076 pyruvate formate lyas 98.1 0.00074 1.6E-08 61.0 20.2 182 49-245 20-209 (213)
151 COG1509 KamA Lysine 2,3-aminom 98.1 0.00051 1.1E-08 65.3 19.1 198 17-238 112-316 (369)
152 COG2108 Uncharacterized conser 98.0 0.00014 3.1E-09 67.8 13.7 164 24-208 36-204 (353)
153 TIGR03279 cyano_FeS_chp putati 98.0 0.00015 3.3E-09 71.3 13.4 116 114-234 125-249 (433)
154 PF13353 Fer4_12: 4Fe-4S singl 97.6 0.00018 3.9E-09 60.2 6.7 92 16-118 5-99 (139)
155 PRK11121 nrdG anaerobic ribonu 97.5 0.00069 1.5E-08 58.0 8.6 93 1-98 1-96 (154)
156 cd03174 DRE_TIM_metallolyase D 97.4 0.0049 1.1E-07 57.5 14.5 149 68-238 32-188 (265)
157 COG5014 Predicted Fe-S oxidore 97.4 0.0082 1.8E-07 51.2 13.9 149 26-193 51-209 (228)
158 TIGR02826 RNR_activ_nrdG3 anae 97.3 0.0024 5.1E-08 54.2 9.7 103 16-135 15-117 (147)
159 KOG2876|consensus 97.2 0.00022 4.7E-09 64.7 2.9 182 18-213 10-197 (323)
160 TIGR02491 NrdG anaerobic ribon 97.2 0.003 6.5E-08 54.1 9.6 78 17-100 16-96 (154)
161 COG0602 NrdG Organic radical a 97.1 0.0016 3.5E-08 58.8 7.0 84 17-112 23-108 (212)
162 COG1313 PflX Uncharacterized F 96.9 0.062 1.3E-06 49.9 15.3 199 24-247 126-333 (335)
163 PF14947 HTH_45: Winged helix- 96.7 0.0082 1.8E-07 44.9 7.0 53 332-384 17-69 (77)
164 cd07944 DRE_TIM_HOA_like 4-hyd 96.4 0.14 3.1E-06 47.9 14.8 101 83-203 57-158 (266)
165 COG1964 Predicted Fe-S oxidore 95.8 0.064 1.4E-06 52.7 9.6 115 68-195 110-228 (475)
166 PRK03902 manganese transport t 95.6 0.097 2.1E-06 44.0 9.2 55 330-384 18-73 (142)
167 TIGR03217 4OH_2_O_val_ald 4-hy 95.3 0.48 1E-05 45.8 13.9 109 103-238 76-185 (333)
168 cd07939 DRE_TIM_NifV Streptomy 95.0 0.84 1.8E-05 42.5 14.2 123 68-202 33-158 (259)
169 PRK08195 4-hyroxy-2-oxovalerat 95.0 0.59 1.3E-05 45.3 13.5 109 103-238 77-186 (337)
170 TIGR03849 arch_ComA phosphosul 95.0 0.82 1.8E-05 41.7 13.4 119 69-203 25-154 (237)
171 smart00347 HTH_MARR helix_turn 94.9 0.17 3.7E-06 39.1 8.1 56 332-387 22-84 (101)
172 TIGR02337 HpaR homoprotocatech 94.9 0.16 3.4E-06 41.1 8.0 63 325-387 33-102 (118)
173 cd07940 DRE_TIM_IPMS 2-isoprop 94.7 1.2 2.5E-05 41.8 14.3 123 68-203 33-163 (268)
174 PF13463 HTH_27: Winged helix 94.6 0.068 1.5E-06 38.5 4.6 47 331-377 15-68 (68)
175 cd07948 DRE_TIM_HCS Saccharomy 94.5 1.4 2.9E-05 41.2 14.2 122 68-202 35-160 (262)
176 PF00682 HMGL-like: HMGL-like 94.5 0.21 4.5E-06 45.8 8.6 151 68-240 27-181 (237)
177 PRK14165 winged helix-turn-hel 94.5 0.18 4E-06 45.5 8.0 61 328-388 15-79 (217)
178 PRK11512 DNA-binding transcrip 94.4 0.27 5.9E-06 41.3 8.5 57 329-385 49-112 (144)
179 PRK11050 manganese transport r 94.3 0.37 8.1E-06 41.0 9.3 63 323-385 40-103 (152)
180 cd07937 DRE_TIM_PC_TC_5S Pyruv 94.2 0.8 1.7E-05 43.1 12.2 119 67-203 33-169 (275)
181 PRK03573 transcriptional regul 94.0 0.32 7E-06 40.8 8.1 54 333-386 45-105 (144)
182 PF09821 AAA_assoc_C: C-termin 93.9 0.12 2.7E-06 42.0 5.1 43 341-383 4-46 (120)
183 PF13601 HTH_34: Winged helix 93.8 0.22 4.8E-06 37.5 6.1 58 329-386 9-74 (80)
184 COG1809 (2R)-phospho-3-sulfola 93.8 1.1 2.4E-05 40.1 11.1 121 69-200 44-170 (258)
185 TIGR02090 LEU1_arch isopropylm 93.8 1.8 4E-05 42.4 14.2 125 68-204 35-162 (363)
186 smart00529 HTH_DTXR Helix-turn 93.6 0.3 6.5E-06 37.8 6.8 49 338-386 3-52 (96)
187 TIGR02660 nifV_homocitr homoci 93.6 2 4.4E-05 42.1 14.1 122 68-201 36-160 (365)
188 PRK05692 hydroxymethylglutaryl 93.6 1.5 3.2E-05 41.6 12.7 106 88-202 61-174 (287)
189 PRK11858 aksA trans-homoaconit 93.5 2 4.3E-05 42.4 13.9 146 68-238 39-187 (378)
190 COG2238 RPS19A Ribosomal prote 93.5 0.15 3.2E-06 42.0 4.9 57 330-389 80-136 (147)
191 PRK09282 pyruvate carboxylase 93.2 1.8 3.9E-05 45.3 13.5 118 68-203 39-174 (592)
192 cd07938 DRE_TIM_HMGL 3-hydroxy 93.1 2 4.4E-05 40.3 12.8 95 103-202 66-168 (274)
193 PLN02746 hydroxymethylglutaryl 93.1 2.1 4.5E-05 41.6 13.1 86 116-203 123-217 (347)
194 COG4742 Predicted transcriptio 92.9 0.59 1.3E-05 43.2 8.4 53 333-385 25-77 (260)
195 COG1321 TroR Mn-dependent tran 92.7 0.85 1.9E-05 38.9 8.7 53 333-385 23-76 (154)
196 PRK13777 transcriptional regul 92.6 0.63 1.4E-05 41.0 7.9 71 314-387 42-119 (185)
197 cd07943 DRE_TIM_HOA 4-hydroxy- 92.4 6.3 0.00014 36.7 14.9 86 103-202 74-160 (263)
198 PTZ00095 40S ribosomal protein 92.4 0.22 4.8E-06 42.6 4.6 39 351-389 122-162 (169)
199 PRK12330 oxaloacetate decarbox 92.2 2.2 4.8E-05 43.5 12.3 120 67-203 39-175 (499)
200 PRK09333 30S ribosomal protein 92.0 0.38 8.3E-06 40.5 5.5 39 351-389 98-136 (150)
201 TIGR02702 SufR_cyano iron-sulf 91.9 0.59 1.3E-05 41.8 7.2 58 324-381 5-71 (203)
202 smart00550 Zalpha Z-DNA-bindin 91.8 1.1 2.4E-05 32.4 7.3 53 323-375 9-66 (68)
203 PRK14041 oxaloacetate decarbox 91.8 3.8 8.2E-05 41.5 13.5 119 68-203 38-173 (467)
204 COG4754 Uncharacterized conser 91.8 0.49 1.1E-05 39.3 5.7 51 333-383 27-77 (157)
205 PRK00915 2-isopropylmalate syn 91.7 4 8.6E-05 42.0 13.8 126 68-202 39-168 (513)
206 COG3432 Predicted transcriptio 91.7 0.47 1E-05 36.8 5.2 54 332-385 29-86 (95)
207 PF10007 DUF2250: Uncharacteri 91.6 0.81 1.7E-05 35.4 6.5 51 333-383 19-91 (92)
208 TIGR01889 Staph_reg_Sar staphy 91.4 1.1 2.5E-05 35.6 7.6 56 333-388 42-104 (109)
209 smart00419 HTH_CRP helix_turn_ 91.2 0.94 2E-05 29.7 5.9 41 334-374 8-48 (48)
210 PRK14040 oxaloacetate decarbox 90.8 4.3 9.2E-05 42.5 13.0 119 68-203 40-175 (593)
211 PRK12331 oxaloacetate decarbox 90.7 6 0.00013 39.9 13.6 119 68-203 39-174 (448)
212 PF01090 Ribosomal_S19e: Ribos 90.7 0.4 8.7E-06 39.9 4.3 39 351-389 97-136 (139)
213 PRK09389 (R)-citramalate synth 90.5 6.5 0.00014 40.2 13.9 123 68-202 37-162 (488)
214 PF01638 HxlR: HxlR-like helix 90.3 1.1 2.5E-05 34.3 6.5 51 335-385 19-77 (90)
215 PRK10870 transcriptional repre 90.3 1.3 2.7E-05 38.8 7.5 54 333-386 70-130 (176)
216 cd07941 DRE_TIM_LeuA3 Desulfob 90.1 9.8 0.00021 35.7 13.8 127 68-202 33-170 (273)
217 PF02679 ComA: (2R)-phospho-3- 90.1 1.1 2.4E-05 41.2 7.0 130 47-203 24-167 (244)
218 PF08220 HTH_DeoR: DeoR-like h 89.8 1.7 3.7E-05 30.2 6.4 50 325-374 5-54 (57)
219 TIGR01884 cas_HTH CRISPR locus 89.8 1.2 2.5E-05 39.9 7.0 49 329-377 152-203 (203)
220 COG1568 Predicted methyltransf 89.6 1.3 2.7E-05 41.3 6.9 67 315-383 17-83 (354)
221 cd00092 HTH_CRP helix_turn_hel 89.5 1.5 3.2E-05 31.1 6.1 43 333-375 24-67 (67)
222 TIGR01108 oadA oxaloacetate de 89.5 7.5 0.00016 40.6 13.5 119 68-203 34-169 (582)
223 PRK12344 putative alpha-isopro 89.1 20 0.00044 37.0 16.2 151 68-238 40-200 (524)
224 PRK04172 pheS phenylalanyl-tRN 89.0 1.2 2.7E-05 45.4 7.4 61 325-385 11-74 (489)
225 cd07945 DRE_TIM_CMS Leptospira 88.8 3.2 7E-05 39.1 9.5 86 117-203 77-167 (280)
226 PF09106 SelB-wing_2: Elongati 88.3 0.68 1.5E-05 32.5 3.5 44 330-373 13-59 (59)
227 COG1339 Transcriptional regula 87.9 1.3 2.7E-05 39.0 5.5 55 333-387 18-76 (214)
228 smart00346 HTH_ICLR helix_turn 87.9 3.4 7.3E-05 31.3 7.6 53 333-385 19-73 (91)
229 PRK15452 putative protease; Pr 87.7 3.4 7.5E-05 41.6 9.4 86 116-206 12-99 (443)
230 PF09202 Rio2_N: Rio2, N-termi 87.7 2.9 6.3E-05 31.6 6.8 67 315-381 4-74 (82)
231 PF09114 MotA_activ: Transcrip 87.3 1.9 4.1E-05 32.7 5.3 54 335-388 31-86 (96)
232 TIGR00695 uxuA mannonate dehyd 86.7 2.4 5.1E-05 41.8 7.3 85 116-208 12-107 (394)
233 cd00090 HTH_ARSR Arsenical Res 86.7 5.6 0.00012 28.2 7.9 50 335-385 21-74 (78)
234 TIGR00977 LeuA_rel 2-isopropyl 86.6 24 0.00052 36.5 14.9 128 68-203 36-174 (526)
235 COG1735 Php Predicted metal-de 86.5 15 0.00032 34.8 12.1 103 45-161 111-215 (316)
236 COG1846 MarR Transcriptional r 86.4 3.9 8.4E-05 32.5 7.6 54 332-385 34-94 (126)
237 smart00418 HTH_ARSR helix_turn 85.7 4.7 0.0001 27.7 6.9 52 332-383 8-64 (66)
238 COG1497 Predicted transcriptio 84.5 5.7 0.00012 36.1 8.0 51 333-383 24-75 (260)
239 PF07848 PaaX: PaaX-like prote 84.2 1.3 2.8E-05 32.4 3.2 36 342-377 31-70 (70)
240 COG0826 Collagenase and relate 83.7 7 0.00015 38.0 9.0 86 116-205 15-101 (347)
241 TIGR00973 leuA_bact 2-isopropy 83.6 25 0.00054 36.1 13.4 126 68-202 36-165 (494)
242 PF14394 DUF4423: Domain of un 83.3 4.1 9E-05 35.4 6.7 50 329-378 33-86 (171)
243 COG2513 PrpB PEP phosphonomuta 83.2 41 0.00089 31.7 13.5 117 112-243 23-151 (289)
244 PF13412 HTH_24: Winged helix- 83.2 6.8 0.00015 25.8 6.3 41 325-365 8-48 (48)
245 PRK12330 oxaloacetate decarbox 83.1 12 0.00027 38.2 10.8 81 47-138 154-236 (499)
246 PF13545 HTH_Crp_2: Crp-like h 83.0 5.5 0.00012 29.0 6.4 45 334-378 28-72 (76)
247 cd07937 DRE_TIM_PC_TC_5S Pyruv 82.5 15 0.00034 34.4 10.7 78 47-137 148-227 (275)
248 PF09012 FeoC: FeoC like trans 82.3 2.3 4.9E-05 30.8 3.9 39 329-367 9-47 (69)
249 PRK07535 methyltetrahydrofolat 82.3 34 0.00073 31.9 12.7 52 67-126 37-88 (261)
250 smart00420 HTH_DEOR helix_turn 82.0 5.9 0.00013 26.2 5.8 40 332-371 12-51 (53)
251 TIGR01334 modD putative molybd 82.0 29 0.00062 32.7 12.1 108 71-206 142-266 (277)
252 PRK11572 copper homeostasis pr 82.0 6.2 0.00013 36.4 7.5 104 70-200 29-145 (248)
253 cd02072 Glm_B12_BD B12 binding 81.3 13 0.00028 30.6 8.5 76 123-200 23-112 (128)
254 cd07377 WHTH_GntR Winged helix 80.6 11 0.00024 26.1 7.2 38 337-374 28-66 (66)
255 PRK03906 mannonate dehydratase 80.5 6 0.00013 39.1 7.4 83 116-206 12-105 (385)
256 PF03551 PadR: Transcriptional 80.4 2.6 5.6E-05 31.0 3.8 37 345-381 28-73 (75)
257 PRK12581 oxaloacetate decarbox 80.4 15 0.00033 37.2 10.2 81 47-140 162-244 (468)
258 PRK14041 oxaloacetate decarbox 80.3 17 0.00038 36.8 10.7 80 48-140 153-234 (467)
259 PRK12331 oxaloacetate decarbox 80.1 17 0.00037 36.7 10.6 80 48-140 154-235 (448)
260 cd00408 DHDPS-like Dihydrodipi 79.7 20 0.00043 33.5 10.5 100 68-180 31-134 (281)
261 COG1733 Predicted transcriptio 78.9 14 0.0003 30.1 7.9 50 336-385 38-95 (120)
262 PRK03170 dihydrodipicolinate s 78.8 17 0.00036 34.3 9.7 102 67-181 34-139 (292)
263 smart00345 HTH_GNTR helix_turn 78.6 8.8 0.00019 26.1 5.9 33 336-368 22-54 (60)
264 PRK07428 nicotinate-nucleotide 78.6 31 0.00068 32.6 11.2 111 70-207 151-275 (288)
265 PRK09834 DNA-binding transcrip 78.3 12 0.00025 34.9 8.3 52 333-384 25-78 (263)
266 PF09339 HTH_IclR: IclR helix- 78.2 8.4 0.00018 26.0 5.5 37 332-368 16-52 (52)
267 PRK12581 oxaloacetate decarbox 78.0 35 0.00076 34.6 12.0 119 68-203 48-183 (468)
268 PRK09875 putative hydrolase; P 77.9 65 0.0014 30.6 17.0 178 45-248 97-279 (292)
269 cd07943 DRE_TIM_HOA 4-hydroxy- 77.7 23 0.00049 33.0 10.1 65 68-137 154-220 (263)
270 PF01325 Fe_dep_repress: Iron 77.7 14 0.00031 25.9 6.7 37 332-368 20-56 (60)
271 TIGR03433 padR_acidobact trans 77.5 13 0.00027 29.1 7.1 39 349-387 40-87 (100)
272 PRK11613 folP dihydropteroate 77.3 66 0.0014 30.4 13.9 59 68-131 51-114 (282)
273 PF12840 HTH_20: Helix-turn-he 76.8 9.6 0.00021 26.6 5.7 44 324-367 14-57 (61)
274 PRK06096 molybdenum transport 76.8 39 0.00084 31.9 11.3 109 70-206 142-267 (284)
275 PLN03228 methylthioalkylmalate 76.7 25 0.00054 36.1 10.7 76 123-202 177-258 (503)
276 PF01261 AP_endonuc_2: Xylose 76.6 20 0.00043 31.3 9.1 113 120-244 1-127 (213)
277 TIGR01610 phage_O_Nterm phage 76.6 15 0.00033 28.4 7.2 44 331-374 44-89 (95)
278 KOG3411|consensus 76.5 5.8 0.00013 32.4 4.8 54 333-389 85-139 (143)
279 PRK08195 4-hyroxy-2-oxovalerat 76.5 34 0.00074 33.2 11.2 66 68-137 157-224 (337)
280 PF12802 MarR_2: MarR family; 76.1 7.7 0.00017 26.9 5.0 39 329-367 14-54 (62)
281 PRK14042 pyruvate carboxylase 76.1 22 0.00047 37.3 10.2 81 47-140 153-235 (596)
282 PF01208 URO-D: Uroporphyrinog 75.5 11 0.00024 36.4 7.6 104 66-194 193-307 (343)
283 TIGR00284 dihydropteroate synt 75.5 54 0.0012 33.6 12.7 114 67-193 177-304 (499)
284 PRK15452 putative protease; Pr 75.3 79 0.0017 32.0 13.7 62 68-134 23-96 (443)
285 PRK13210 putative L-xylulose 5 75.2 59 0.0013 30.1 12.3 122 112-244 13-148 (284)
286 PRK14024 phosphoribosyl isomer 74.9 40 0.00088 30.8 10.8 120 68-207 45-170 (241)
287 PF00126 HTH_1: Bacterial regu 74.5 9.8 0.00021 26.5 5.2 43 336-378 15-60 (60)
288 PF01726 LexA_DNA_bind: LexA D 74.5 15 0.00032 26.3 6.2 36 335-370 26-62 (65)
289 PF13730 HTH_36: Helix-turn-he 74.3 17 0.00038 24.5 6.4 29 336-364 27-55 (55)
290 PF02082 Rrf2: Transcriptional 73.9 23 0.00049 26.5 7.4 41 335-375 26-69 (83)
291 cd02810 DHOD_DHPD_FMN Dihydroo 73.8 47 0.001 31.1 11.3 96 104-205 99-198 (289)
292 PF03786 UxuA: D-mannonate deh 73.7 3.6 7.9E-05 39.8 3.6 83 118-207 15-108 (351)
293 cd00954 NAL N-Acetylneuraminic 73.6 81 0.0018 29.7 14.1 100 118-237 25-125 (288)
294 TIGR00542 hxl6Piso_put hexulos 73.4 52 0.0011 30.6 11.4 83 117-203 19-114 (279)
295 PRK14040 oxaloacetate decarbox 73.3 29 0.00062 36.5 10.3 80 48-140 155-236 (593)
296 PF01047 MarR: MarR family; I 73.2 9.1 0.0002 26.3 4.8 41 327-367 10-50 (59)
297 PRK08883 ribulose-phosphate 3- 73.2 72 0.0016 28.9 13.5 145 89-276 47-197 (220)
298 PF01729 QRPTase_C: Quinolinat 72.8 5.3 0.00012 34.6 4.1 57 68-135 100-156 (169)
299 PF08461 HTH_12: Ribonuclease 72.7 7.7 0.00017 27.9 4.3 36 345-380 27-65 (66)
300 TIGR02716 C20_methyl_CrtF C-20 72.4 7.1 0.00015 37.1 5.3 48 334-381 23-70 (306)
301 TIGR00683 nanA N-acetylneurami 72.3 88 0.0019 29.5 13.6 78 119-204 26-104 (290)
302 cd04731 HisF The cyclase subun 72.2 25 0.00054 32.1 8.8 100 89-206 61-172 (243)
303 PF03932 CutC: CutC family; I 72.1 16 0.00036 32.5 7.2 101 73-201 31-145 (201)
304 TIGR02313 HpaI-NOT-DapA 2,4-di 71.9 54 0.0012 31.0 11.2 116 67-194 33-153 (294)
305 PF00682 HMGL-like: HMGL-like 71.8 25 0.00054 31.9 8.6 78 48-137 137-216 (237)
306 COG2345 Predicted transcriptio 71.6 14 0.00031 33.3 6.7 55 325-379 16-79 (218)
307 PRK02261 methylaspartate mutas 71.5 19 0.00042 29.9 7.1 72 116-200 43-116 (137)
308 PRK08091 ribulose-phosphate 3- 71.5 82 0.0018 28.7 13.7 133 104-275 71-208 (228)
309 PLN02321 2-isopropylmalate syn 71.2 90 0.0019 33.1 13.4 70 129-202 184-259 (632)
310 TIGR03217 4OH_2_O_val_ald 4-hy 71.0 19 0.00041 34.9 7.9 66 68-137 156-223 (333)
311 TIGR00674 dapA dihydrodipicoli 70.9 35 0.00076 32.1 9.6 115 67-194 31-150 (285)
312 PRK10141 DNA-binding transcrip 70.8 37 0.00081 27.4 8.4 61 328-388 24-88 (117)
313 cd00408 DHDPS-like Dihydrodipi 70.8 81 0.0018 29.4 12.1 99 118-236 22-120 (281)
314 cd00950 DHDPS Dihydrodipicolin 70.6 32 0.00069 32.3 9.3 116 67-195 33-153 (284)
315 cd00950 DHDPS Dihydrodipicolin 70.3 94 0.002 29.0 13.7 100 118-237 25-124 (284)
316 TIGR01212 radical SAM protein, 70.3 1E+02 0.0022 29.3 18.6 172 48-245 94-296 (302)
317 TIGR00683 nanA N-acetylneurami 70.2 30 0.00065 32.7 9.0 116 67-194 33-154 (290)
318 cd04732 HisA HisA. Phosphorib 70.1 20 0.00042 32.5 7.5 121 68-206 42-169 (234)
319 PRK03620 5-dehydro-4-deoxygluc 70.0 1E+02 0.0022 29.3 12.9 111 67-193 40-154 (303)
320 PF00392 GntR: Bacterial regul 69.9 12 0.00027 26.3 4.9 34 336-369 26-59 (64)
321 PRK14042 pyruvate carboxylase 69.8 96 0.0021 32.6 13.2 120 67-203 38-174 (596)
322 PRK00748 1-(5-phosphoribosyl)- 69.8 26 0.00057 31.6 8.3 120 67-206 42-169 (233)
323 PRK05692 hydroxymethylglutaryl 69.7 53 0.0012 31.0 10.5 80 47-138 154-235 (287)
324 PF06180 CbiK: Cobalt chelatas 69.5 71 0.0015 29.8 11.1 156 68-245 71-236 (262)
325 PRK07259 dihydroorotate dehydr 69.3 87 0.0019 29.6 12.1 139 81-246 139-292 (301)
326 PTZ00326 phenylalanyl-tRNA syn 69.1 17 0.00037 37.0 7.3 58 326-383 12-73 (494)
327 TIGR01108 oadA oxaloacetate de 69.0 44 0.00096 35.0 10.6 80 48-140 149-230 (582)
328 PRK07428 nicotinate-nucleotide 69.0 23 0.0005 33.5 7.8 59 68-137 216-274 (288)
329 PRK07896 nicotinate-nucleotide 69.0 13 0.00029 35.1 6.2 60 68-138 219-278 (289)
330 PF09397 Ftsk_gamma: Ftsk gamm 68.6 14 0.0003 26.6 4.8 37 332-368 18-54 (65)
331 cd07939 DRE_TIM_NifV Streptomy 68.2 40 0.00087 31.2 9.3 80 47-137 138-217 (259)
332 TIGR02431 pcaR_pcaU beta-ketoa 67.8 35 0.00076 31.2 8.8 52 332-383 22-73 (248)
333 PLN02617 imidazole glycerol ph 67.5 51 0.0011 34.2 10.5 140 67-212 279-466 (538)
334 cd07942 DRE_TIM_LeuA Mycobacte 67.0 1.2E+02 0.0025 28.8 13.4 121 68-195 36-168 (284)
335 cd07945 DRE_TIM_CMS Leptospira 66.9 68 0.0015 30.2 10.6 80 48-139 147-228 (280)
336 PLN02433 uroporphyrinogen deca 66.8 1.3E+02 0.0028 29.2 15.1 62 67-134 191-260 (345)
337 PRK10434 srlR DNA-bindng trans 66.5 17 0.00038 33.6 6.4 53 322-374 7-59 (256)
338 TIGR01463 mtaA_cmuA methyltran 66.3 39 0.00084 32.6 9.1 61 67-134 192-262 (340)
339 PRK12999 pyruvate carboxylase; 66.2 93 0.002 35.6 13.1 120 68-203 570-711 (1146)
340 PF03444 HrcA_DNA-bdg: Winged 66.2 28 0.00061 25.9 6.1 52 331-382 20-74 (78)
341 PRK03170 dihydrodipicolinate s 65.9 1.2E+02 0.0026 28.5 13.6 77 119-203 27-103 (292)
342 COG1349 GlpR Transcriptional r 65.8 18 0.00038 33.6 6.3 53 322-374 7-59 (253)
343 COG1695 Predicted transcriptio 65.7 10 0.00023 31.3 4.4 40 348-387 44-92 (138)
344 TIGR01235 pyruv_carbox pyruvat 65.6 43 0.00093 38.1 10.3 79 47-138 688-768 (1143)
345 COG1414 IclR Transcriptional r 65.5 38 0.00083 31.1 8.5 52 333-384 18-71 (246)
346 PLN02853 Probable phenylalanyl 65.4 21 0.00045 36.4 7.0 57 327-383 10-70 (492)
347 PRK06252 methylcobalamin:coenz 65.3 92 0.002 29.9 11.5 125 67-214 192-324 (339)
348 cd07940 DRE_TIM_IPMS 2-isoprop 65.2 41 0.00089 31.3 8.8 81 47-137 142-224 (268)
349 TIGR00738 rrf2_super rrf2 fami 65.2 44 0.00096 27.1 8.1 47 334-380 25-74 (132)
350 PF01978 TrmB: Sugar-specific 65.1 8.3 0.00018 27.6 3.2 39 331-369 19-57 (68)
351 PRK07329 hypothetical protein; 64.8 67 0.0014 29.5 10.0 109 45-168 122-242 (246)
352 PF01136 Peptidase_U32: Peptid 64.8 30 0.00065 31.3 7.6 58 66-137 13-70 (233)
353 TIGR00007 phosphoribosylformim 64.4 45 0.00098 30.1 8.7 89 105-207 74-169 (230)
354 cd03308 CmuA_CmuC_like CmuA_Cm 64.3 1.2E+02 0.0025 30.0 12.1 62 71-139 233-302 (378)
355 PRK06096 molybdenum transport 64.0 31 0.00067 32.6 7.6 58 68-136 209-266 (284)
356 PF01729 QRPTase_C: Quinolinat 63.8 98 0.0021 26.8 11.3 93 87-206 66-158 (169)
357 PRK09282 pyruvate carboxylase 63.7 67 0.0015 33.8 10.7 80 48-140 154-235 (592)
358 PF08784 RPA_C: Replication pr 63.6 18 0.00039 28.2 5.1 39 329-367 60-98 (102)
359 PF08672 APC2: Anaphase promot 63.5 16 0.00034 25.8 4.2 31 343-373 30-60 (60)
360 PF00701 DHDPS: Dihydrodipicol 63.3 1.3E+02 0.0028 28.2 11.9 79 118-204 26-104 (289)
361 PRK08385 nicotinate-nucleotide 63.3 24 0.00052 33.2 6.7 62 68-138 202-263 (278)
362 cd07944 DRE_TIM_HOA_like 4-hyd 63.2 56 0.0012 30.5 9.2 66 68-137 151-218 (266)
363 TIGR02277 PaaX_trns_reg phenyl 62.9 16 0.00035 34.4 5.6 47 341-387 27-77 (280)
364 PRK05286 dihydroorotate dehydr 62.9 1.3E+02 0.0029 29.1 12.1 115 86-205 123-247 (344)
365 PF08915 tRNA-Thr_ED: Archaea- 62.7 44 0.00096 27.8 7.3 49 190-247 65-113 (138)
366 PRK09802 DNA-binding transcrip 62.6 25 0.00054 32.9 6.7 53 322-374 19-71 (269)
367 PRK05848 nicotinate-nucleotide 62.6 20 0.00044 33.6 6.1 59 68-137 202-260 (273)
368 PRK10906 DNA-binding transcrip 62.5 26 0.00056 32.4 6.8 53 322-374 7-59 (252)
369 TIGR01501 MthylAspMutase methy 62.5 69 0.0015 26.6 8.6 71 117-200 42-114 (134)
370 PF09382 RQC: RQC domain; Int 62.3 18 0.0004 28.2 5.0 35 349-383 57-96 (106)
371 cd00952 CHBPH_aldolase Trans-o 62.2 95 0.0021 29.6 10.8 116 67-194 41-161 (309)
372 cd04740 DHOD_1B_like Dihydroor 62.0 1.4E+02 0.0031 28.0 13.0 139 82-246 137-289 (296)
373 PRK13209 L-xylulose 5-phosphat 62.0 1.3E+02 0.0029 27.8 11.8 82 117-203 24-119 (283)
374 PRK15447 putative protease; Pr 61.5 44 0.00096 31.8 8.3 77 116-204 17-96 (301)
375 cd00739 DHPS DHPS subgroup of 61.5 1.4E+02 0.003 27.7 11.5 56 68-131 37-100 (257)
376 TIGR01334 modD putative molybd 61.4 38 0.00083 31.9 7.7 59 67-136 207-265 (277)
377 PRK12999 pyruvate carboxylase; 61.3 56 0.0012 37.3 10.2 81 47-140 690-772 (1146)
378 PRK15431 ferrous iron transpor 61.1 24 0.00052 26.3 4.9 39 329-367 11-49 (78)
379 PRK14582 pgaB outer membrane N 61.0 49 0.0011 35.2 9.2 153 87-247 230-399 (671)
380 cd03413 CbiK_C Anaerobic cobal 60.9 77 0.0017 24.9 8.3 72 160-245 23-95 (103)
381 TIGR00674 dapA dihydrodipicoli 60.8 1.5E+02 0.0032 27.8 12.2 100 118-237 23-122 (285)
382 cd06556 ICL_KPHMT Members of t 60.4 1.4E+02 0.0029 27.5 11.0 86 112-202 17-108 (240)
383 TIGR01037 pyrD_sub1_fam dihydr 60.0 1.5E+02 0.0034 27.8 13.2 140 82-246 140-292 (300)
384 PRK04147 N-acetylneuraminate l 59.9 76 0.0017 29.9 9.7 115 54-181 23-142 (293)
385 PF10711 DUF2513: Hypothetical 59.7 18 0.00039 28.4 4.5 40 346-385 32-81 (102)
386 TIGR03249 KdgD 5-dehydro-4-deo 59.6 1.6E+02 0.0034 27.8 12.1 134 54-202 25-161 (296)
387 TIGR02647 DNA conserved hypoth 59.0 19 0.00041 26.6 4.0 35 350-385 35-69 (77)
388 PRK05265 pyridoxine 5'-phospha 58.9 66 0.0014 29.5 8.4 101 82-203 52-154 (239)
389 cd03413 CbiK_C Anaerobic cobal 58.9 51 0.0011 25.9 6.9 59 71-134 3-62 (103)
390 TIGR02719 repress_PhaQ poly-be 58.9 21 0.00045 29.9 4.9 39 349-387 58-105 (138)
391 PF14338 Mrr_N: Mrr N-terminal 58.8 10 0.00022 29.1 2.9 31 352-382 58-89 (92)
392 PRK05848 nicotinate-nucleotide 58.3 1.1E+02 0.0023 28.8 10.1 111 70-207 137-261 (273)
393 TIGR03128 RuMP_HxlA 3-hexulose 58.1 1.1E+02 0.0025 26.8 10.0 106 68-203 24-133 (206)
394 PRK15090 DNA-binding transcrip 58.1 50 0.0011 30.4 8.0 52 332-383 26-79 (257)
395 TIGR03849 arch_ComA phosphosul 58.0 1E+02 0.0023 28.2 9.6 103 82-198 9-115 (237)
396 PF01261 AP_endonuc_2: Xylose 58.0 37 0.0008 29.5 6.8 114 46-171 66-191 (213)
397 PRK03601 transcriptional regul 57.9 33 0.00072 31.7 6.8 49 337-385 18-69 (275)
398 cd00951 KDGDH 5-dehydro-4-deox 57.8 1.7E+02 0.0036 27.5 12.9 133 54-202 20-156 (289)
399 COG0375 HybF Zn finger protein 57.5 42 0.0009 27.1 6.1 65 49-114 6-70 (115)
400 cd00717 URO-D Uroporphyrinogen 57.5 65 0.0014 30.9 8.9 121 67-214 189-324 (335)
401 TIGR02147 Fsuc_second hypothet 57.4 34 0.00073 32.1 6.6 48 329-376 131-182 (271)
402 PRK09391 fixK transcriptional 57.3 63 0.0014 29.1 8.3 45 335-379 180-225 (230)
403 COG1490 Dtd D-Tyr-tRNAtyr deac 57.3 85 0.0018 26.1 7.9 67 178-244 35-119 (145)
404 PLN02746 hydroxymethylglutaryl 57.2 76 0.0016 30.9 9.2 79 48-138 197-277 (347)
405 cd07947 DRE_TIM_Re_CS Clostrid 57.2 1.7E+02 0.0037 27.5 13.5 118 69-203 40-170 (279)
406 TIGR03822 AblA_like_2 lysine-2 57.2 1.8E+02 0.004 27.8 12.4 116 69-195 168-293 (321)
407 TIGR02455 TreS_stutzeri trehal 56.9 54 0.0012 34.6 8.4 135 105-247 52-217 (688)
408 COG2143 Thioredoxin-related pr 56.8 8.4 0.00018 32.8 2.1 26 12-37 36-61 (182)
409 PF07745 Glyco_hydro_53: Glyco 56.7 29 0.00064 33.5 6.2 132 115-256 25-181 (332)
410 cd07941 DRE_TIM_LeuA3 Desulfob 56.7 95 0.0021 29.0 9.6 65 68-137 164-230 (273)
411 PRK11753 DNA-binding transcrip 56.5 28 0.0006 30.7 5.7 41 335-375 169-209 (211)
412 PRK15447 putative protease; Pr 56.4 1.8E+02 0.004 27.6 12.1 38 68-110 28-68 (301)
413 PF00834 Ribul_P_3_epim: Ribul 56.3 60 0.0013 28.9 7.8 118 89-244 47-166 (201)
414 cd03409 Chelatase_Class_II Cla 56.3 71 0.0015 24.3 7.4 59 72-133 3-64 (101)
415 PF01022 HTH_5: Bacterial regu 56.3 46 0.001 21.8 5.4 39 326-365 8-46 (47)
416 COG3623 SgaU Putative L-xylulo 55.9 80 0.0017 28.9 8.2 94 111-207 14-120 (287)
417 TIGR00735 hisF imidazoleglycer 55.8 80 0.0017 29.1 8.8 87 107-205 76-177 (254)
418 PLN02417 dihydrodipicolinate s 55.8 1.8E+02 0.0039 27.2 12.5 98 119-236 27-124 (280)
419 smart00843 Ftsk_gamma This dom 55.8 37 0.00081 24.2 5.0 37 332-368 17-53 (63)
420 TIGR03572 WbuZ glycosyl amidat 55.7 60 0.0013 29.3 8.0 89 104-206 75-176 (232)
421 COG2996 Predicted RNA-bindinin 55.7 44 0.00096 31.1 6.8 56 319-374 228-286 (287)
422 PRK06559 nicotinate-nucleotide 55.6 26 0.00057 33.1 5.5 57 68-138 217-273 (290)
423 TIGR01464 hemE uroporphyrinoge 55.4 2E+02 0.0043 27.6 13.9 121 67-213 192-326 (338)
424 TIGR02801 tolR TolR protein. T 55.2 43 0.00093 27.3 6.2 35 101-135 91-128 (129)
425 TIGR03820 lys_2_3_AblA lysine- 55.1 1.7E+02 0.0037 29.3 11.4 144 79-250 135-284 (417)
426 PRK09416 lstR lineage-specific 55.1 23 0.0005 29.4 4.5 37 349-385 78-119 (135)
427 COG0469 PykF Pyruvate kinase [ 55.1 52 0.0011 33.5 7.8 65 103-179 6-72 (477)
428 TIGR00262 trpA tryptophan synt 55.0 78 0.0017 29.3 8.6 93 110-204 19-123 (256)
429 PF00701 DHDPS: Dihydrodipicol 54.9 69 0.0015 30.1 8.4 112 68-194 35-153 (289)
430 PRK13585 1-(5-phosphoribosyl)- 54.8 72 0.0016 28.9 8.4 88 105-206 78-172 (241)
431 PLN02321 2-isopropylmalate syn 54.7 86 0.0019 33.2 9.7 113 118-244 112-225 (632)
432 COG2513 PrpB PEP phosphonomuta 54.5 39 0.00085 31.8 6.4 84 67-161 178-267 (289)
433 cd07948 DRE_TIM_HCS Saccharomy 53.8 98 0.0021 28.8 9.1 62 68-135 154-217 (262)
434 TIGR01211 ELP3 histone acetylt 53.8 2.7E+02 0.0059 28.8 18.6 161 69-257 192-396 (522)
435 cd08560 GDPD_EcGlpQ_like_1 Gly 53.7 20 0.00043 35.1 4.6 58 86-148 152-222 (356)
436 TIGR00737 nifR3_yhdG putative 53.7 1.8E+02 0.0039 27.7 11.2 103 83-203 115-222 (319)
437 cd03174 DRE_TIM_metallolyase D 53.5 88 0.0019 28.6 8.8 78 48-137 146-225 (265)
438 PRK08005 epimerase; Validated 53.4 1.2E+02 0.0026 27.2 9.2 80 89-192 48-129 (210)
439 PF14277 DUF4364: Domain of un 53.4 31 0.00066 29.7 5.2 35 350-384 35-74 (163)
440 PRK06978 nicotinate-nucleotide 53.3 29 0.00063 32.9 5.4 59 68-140 225-283 (294)
441 PRK02261 methylaspartate mutas 52.7 1.1E+02 0.0023 25.5 8.2 104 66-193 29-134 (137)
442 PF00325 Crp: Bacterial regula 52.6 40 0.00087 20.5 4.1 29 336-364 4-32 (32)
443 TIGR00559 pdxJ pyridoxine 5'-p 52.6 56 0.0012 29.9 6.9 50 83-140 108-157 (237)
444 PRK11242 DNA-binding transcrip 52.5 38 0.00082 31.5 6.2 49 337-385 18-69 (296)
445 PRK10402 DNA-binding transcrip 52.3 62 0.0013 29.0 7.4 44 335-378 170-213 (226)
446 PRK00564 hypA hydrogenase nick 51.9 66 0.0014 26.0 6.6 52 64-115 21-72 (117)
447 TIGR02036 dsdC D-serine deamin 51.9 47 0.001 31.2 6.8 51 337-387 25-78 (302)
448 COG0478 RIO-like serine/threon 51.9 56 0.0012 30.8 6.9 68 314-381 10-81 (304)
449 TIGR00542 hxl6Piso_put hexulos 51.8 2E+02 0.0043 26.6 13.7 142 46-199 89-243 (279)
450 PRK11161 fumarate/nitrate redu 51.6 71 0.0015 28.6 7.8 43 335-377 185-227 (235)
451 PF02324 Glyco_hydro_70: Glyco 51.4 16 0.00034 38.4 3.6 33 147-180 641-678 (809)
452 PF13714 PEP_mutase: Phosphoen 51.3 48 0.001 30.4 6.4 120 112-244 14-139 (238)
453 PRK08207 coproporphyrinogen II 50.9 2.6E+02 0.0056 28.7 12.3 112 48-179 235-363 (488)
454 cd00952 CHBPH_aldolase Trans-o 50.9 2.3E+02 0.0049 27.0 11.9 77 119-203 34-110 (309)
455 COG0119 LeuA Isopropylmalate/h 50.6 2.7E+02 0.0058 27.9 12.0 109 116-239 78-189 (409)
456 TIGR03697 NtcA_cyano global ni 50.5 43 0.00094 28.9 5.9 45 335-379 144-188 (193)
457 COG3142 CutC Uncharacterized p 50.4 1.3E+02 0.0029 27.4 8.8 109 69-202 28-147 (241)
458 cd00954 NAL N-Acetylneuraminic 50.4 2.2E+02 0.0048 26.7 11.3 115 68-194 35-154 (288)
459 TIGR01303 IMP_DH_rel_1 IMP deh 50.3 1.5E+02 0.0033 30.2 10.5 118 68-204 237-358 (475)
460 COG3355 Predicted transcriptio 50.3 52 0.0011 27.0 5.7 37 331-367 39-75 (126)
461 PF13714 PEP_mutase: Phosphoen 50.2 34 0.00073 31.4 5.3 57 66-137 166-222 (238)
462 PRK11014 transcriptional repre 50.1 77 0.0017 26.2 7.1 41 335-375 26-69 (141)
463 PRK11139 DNA-binding transcrip 49.9 48 0.001 30.9 6.5 51 336-386 22-75 (297)
464 PRK09016 quinolinate phosphori 49.9 36 0.00078 32.3 5.5 56 68-137 228-283 (296)
465 cd02801 DUS_like_FMN Dihydrour 49.8 1.8E+02 0.0039 25.9 10.1 85 118-205 71-160 (231)
466 PRK06543 nicotinate-nucleotide 49.7 34 0.00073 32.3 5.2 59 68-140 213-271 (281)
467 PRK08446 coproporphyrinogen II 49.6 2.5E+02 0.0055 27.2 12.7 140 47-206 67-230 (350)
468 COG1802 GntR Transcriptional r 49.5 33 0.00071 31.0 5.1 50 329-378 34-84 (230)
469 cd00423 Pterin_binding Pterin 49.4 2.1E+02 0.0046 26.3 10.6 56 68-128 37-97 (258)
470 TIGR03339 phn_lysR aminoethylp 49.4 55 0.0012 29.9 6.8 49 337-385 14-65 (279)
471 cd00953 KDG_aldolase KDG (2-ke 49.3 2.3E+02 0.0049 26.5 11.0 134 54-202 19-155 (279)
472 PF05491 RuvB_C: Holliday junc 49.2 92 0.002 23.1 6.3 47 335-381 26-73 (76)
473 PRK01033 imidazole glycerol ph 49.2 1.6E+02 0.0035 27.2 9.8 89 104-206 75-175 (258)
474 PF11313 DUF3116: Protein of u 49.1 38 0.00083 25.7 4.4 36 350-385 43-82 (85)
475 cd00740 MeTr MeTr subgroup of 48.7 2.2E+02 0.0048 26.3 10.5 53 68-128 39-93 (252)
476 COG1312 UxuA D-mannonate dehyd 48.6 38 0.00081 32.6 5.3 86 116-208 12-107 (362)
477 PRK06247 pyruvate kinase; Prov 48.3 80 0.0017 32.2 8.0 64 104-179 7-72 (476)
478 TIGR03338 phnR_burk phosphonat 48.3 96 0.0021 27.4 7.9 44 335-378 35-79 (212)
479 PRK10341 DNA-binding transcrip 48.2 48 0.001 31.2 6.3 50 336-385 23-75 (312)
480 TIGR02313 HpaI-NOT-DapA 2,4-di 48.2 2.4E+02 0.0053 26.6 11.9 78 119-204 26-103 (294)
481 PRK05638 threonine synthase; V 48.0 54 0.0012 33.1 6.8 51 333-383 383-440 (442)
482 PF07555 NAGidase: beta-N-acet 47.9 57 0.0012 31.2 6.6 122 117-241 18-148 (306)
483 cd00003 PNPsynthase Pyridoxine 47.7 76 0.0016 29.0 6.9 50 83-140 108-157 (234)
484 PF05636 HIGH_NTase1: HIGH Nuc 47.7 6.9 0.00015 38.7 0.4 82 76-161 44-130 (388)
485 PRK13210 putative L-xylulose 5 47.6 2.3E+02 0.005 26.1 13.4 124 68-199 107-249 (284)
486 PLN02495 oxidoreductase, actin 47.6 1.9E+02 0.0042 28.6 10.4 82 118-205 131-216 (385)
487 PRK14114 1-(5-phosphoribosyl)- 47.2 58 0.0012 29.9 6.3 123 67-211 42-171 (241)
488 cd07938 DRE_TIM_HMGL 3-hydroxy 47.1 1.4E+02 0.003 28.0 9.0 77 48-136 149-227 (274)
489 PHA00738 putative HTH transcri 46.9 83 0.0018 25.0 6.2 45 323-367 15-59 (108)
490 KOG2900|consensus 46.8 92 0.002 28.8 7.3 104 120-245 126-230 (380)
491 COG2469 Uncharacterized conser 46.7 35 0.00077 31.7 4.7 85 296-386 196-282 (284)
492 smart00642 Aamy Alpha-amylase 46.6 48 0.0011 28.5 5.4 32 148-180 65-97 (166)
493 PRK13509 transcriptional repre 46.6 66 0.0014 29.7 6.7 50 323-372 8-57 (251)
494 PRK10837 putative DNA-binding 46.4 57 0.0012 30.1 6.4 50 336-385 19-71 (290)
495 PRK03620 5-dehydro-4-deoxygluc 46.3 2.6E+02 0.0057 26.4 11.9 76 119-203 33-108 (303)
496 PRK08392 hypothetical protein; 46.2 1.5E+02 0.0033 26.4 8.9 67 84-167 136-205 (215)
497 PRK11013 DNA-binding transcrip 46.2 44 0.00096 31.5 5.7 50 336-385 20-72 (309)
498 PRK12423 LexA repressor; Provi 46.2 84 0.0018 27.9 7.1 34 336-369 27-61 (202)
499 PRK06106 nicotinate-nucleotide 46.1 37 0.00081 32.0 5.0 57 68-138 214-270 (281)
500 PRK14581 hmsF outer membrane N 45.8 3.8E+02 0.0081 28.8 12.7 155 91-253 234-408 (672)
No 1
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.7e-87 Score=654.88 Aligned_cols=375 Identities=36% Similarity=0.621 Sum_probs=344.6
Q ss_pred CCCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHH
Q psy2383 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLK 92 (391)
Q Consensus 13 ~~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~ 92 (391)
+..+++||||||||+++|.||+|++.... .....+|+++|.+||+...+.+.+..+++|||||||||+++++.++++++
T Consensus 8 ~~~~~~lYiHiPFC~~~C~yC~f~~~~~~-~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~l~~ll~ 86 (390)
T PRK06582 8 MANDLSIYIHWPFCLSKCPYCDFNSHVAS-TIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIIN 86 (390)
T ss_pred CCCCeEEEEEeCCCcCcCCCCCCeeccCC-CCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCHHHHHHHHH
Confidence 55789999999999999999999988653 23467899999999998665555567999999999999999999999999
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEe
Q psy2383 93 NIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLD 172 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~d 172 (391)
.+++.+++++.+|||+|+||++++++.++.|+++|||||||||||||+++|+.+||.|+.+++.++++.+++++.++++|
T Consensus 87 ~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~D 166 (390)
T PRK06582 87 KISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFD 166 (390)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999887679999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~ 249 (391)
||+|+||||.++|.++++.+++++|+||++|+|+++|||++++.. ...+|++++.++||..+.+.|.++||.+||++
T Consensus 167 lI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis 246 (390)
T PRK06582 167 LIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEIS 246 (390)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeece
Confidence 999999999999999999999999999999999999999998753 24578999999999999999999999999999
Q ss_pred ccccCCccchhhhhhhcCCcEEEeCcCccccccCCC-ceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHH
Q psy2383 250 AYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLN 327 (391)
Q Consensus 250 ~fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~-~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~ 327 (391)
||||||++|+||..||++.||+|||+||+|++++.. +..|+.|..++.+|++.++++ .|+...+.+++++++.|.+|+
T Consensus 247 ~fa~~g~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~~~r~~~~~~~~~Y~~~~~~~~~p~~~~~~l~~~e~~~e~i~l 326 (390)
T PRK06582 247 NYAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIESSSSVSAIMMWHKPEKWLDAVKTKNVGIQTNTKLTHQEIIEEILMM 326 (390)
T ss_pred eeeCCChhhhhHHHHhcCCcEEEECCCeeecccCCCCCceeEEecCCHHHHHHHHHcCCCCcceeeeCCHHHHHHHHHHH
Confidence 999999999999999999999999999999987411 224678899999999999875 678888999999999999999
Q ss_pred hhhhcCCCChhHHHHHhCCCHHH-H-HHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKI-I-ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~-~-~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
+||+.+|+|.+.|.++||.++.. + .+.++.|++.||+.. +++++||++|++++|.|+..|+
T Consensus 327 ~LR~~~Gl~~~~~~~~~g~~~~~~~~~~~l~~l~~~gll~~-~~~l~lT~~G~~~~d~i~~~~~ 389 (390)
T PRK06582 327 GLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIRL-DENIYLTDKGLMLHSYIVPRLI 389 (390)
T ss_pred HHHhhCCCCHHHHHHHHCcCHHHhhhHHHHHHHHHCCCEEE-CCEEEECcchhHHHHHHHHHHh
Confidence 99999999999999999999865 3 478999999999998 6899999999999999999886
No 2
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.9e-85 Score=641.72 Aligned_cols=378 Identities=56% Similarity=1.003 Sum_probs=347.4
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCCcccccCc--ccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHH
Q psy2383 11 IKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKN--ISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLD 88 (391)
Q Consensus 11 ~~~~~~~~lYihiPfC~~~C~yC~~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~ 88 (391)
++..+|++||||||||+++|.||+|++....+. ...++|+++|.+||+.......+..+++||||||||++|++++|.
T Consensus 14 ~~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~~L~ 93 (394)
T PRK08898 14 LTSLPPLSLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLD 93 (394)
T ss_pred cCCCCCeEEEEEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHHHHH
Confidence 334468899999999999999999988764322 245789999999999764333346799999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhccc
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNN 168 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~ 168 (391)
+|++.|++.|++.++.|||+|++|++++.+.++.|+++|||||||||||+||++|+.+||.|+.+++.++++.+++.+.+
T Consensus 94 ~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~ 173 (394)
T PRK08898 94 RLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDN 173 (394)
T ss_pred HHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999988667
Q ss_pred ceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecc
Q psy2383 169 FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEI 248 (391)
Q Consensus 169 v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~ 248 (391)
+++|||+|+||||.++|.++++.+.+++|+||++|+|+++|||++++... .+|+.+...+||..+.+.|.++||.+||+
T Consensus 174 v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~-~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~ 252 (394)
T PRK08898 174 FNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPP-ALPDDDASADMQDWIEARLAAAGYAHYEV 252 (394)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccC-CCCChHHHHHHHHHHHHHHHHcCCchhcc
Confidence 99999999999999999999999999999999999999999999988654 57889999999999999999999999999
Q ss_pred cccccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcCCCcceeeecCHhhHHHHHHHHh
Q psy2383 249 SAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNA 328 (391)
Q Consensus 249 ~~fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 328 (391)
++|+|||++|+||..||...||+|||+||+|++++.....|+.|.+++++|++.++++.++...+.++++++..+.+|++
T Consensus 253 ~~fa~~~~~~~hn~~~w~~~~~lg~G~gA~s~l~~~~~~~r~~n~~~l~~Y~~~i~~~~~~~~~~~ls~~~~~~~~~~l~ 332 (394)
T PRK08898 253 SAYAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLSFPDRILRQMRYKHPATYLEQAKAGTAVQEEREVGARDLPFEFMLNA 332 (394)
T ss_pred ccccCCCccchhHHHHhCCCCEEEECCCeeeeecCCCceEEeecCCCHHHHHHHHHcCCCccceeecCHhhHHHHHHHHH
Confidence 99999999999999999999999999999999874223468899999999999998776677778899999999999999
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
||+..|+|.+.|.++||.+++.+.+.++.|++.||+..++++++||++|++++|+|+..|+
T Consensus 333 LR~~~Gld~~~f~~~~g~~~~~~~~~l~~l~~~gll~~~~~~~~LT~~G~~~~d~i~~~~~ 393 (394)
T PRK08898 333 LRLTDGVPAHLFQERTGLPLAAIEPQLAAAEQRGLLERDHTRIRPTPLGQRFLNDLQELFL 393 (394)
T ss_pred HHHhCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEEChhHhHHHHHHHHHHh
Confidence 9999999999999999998877778999999999999999999999999999999999886
No 3
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=2.4e-85 Score=642.54 Aligned_cols=374 Identities=33% Similarity=0.602 Sum_probs=342.8
Q ss_pred CCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 14 ~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
.+|++||||||||+++|.||+|++.... .....+|+++|++||+..+..+++..+++|||||||||+++++++++|++.
T Consensus 2 ~~~~~lYiHIPFC~~kC~yC~f~~~~~~-~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~L~~ll~~ 80 (380)
T PRK09057 2 DGGFGLYVHWPFCLAKCPYCDFNSHVRH-AIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLDA 80 (380)
T ss_pred CCceEEEEEeCCcCCcCCCCCCcccCcC-cCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCHHHHHHHHHH
Confidence 3578999999999999999999987643 234578999999999976655555679999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeE
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDL 173 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dl 173 (391)
|++.|++.+.+|+|+|++|++++.+.++.|+++||||||+|||||||++|+.+||.|+.+++.++++.+++++.++++||
T Consensus 81 i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dl 160 (380)
T PRK09057 81 IARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDL 160 (380)
T ss_pred HHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEe
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999966799999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
|+|+||||.++|.++++.+++++|+||++|+|++.|||++++.. ...+|++++..+||..+.+.|.++||.+|++++
T Consensus 161 i~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s~ 240 (380)
T PRK09057 161 IYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISN 240 (380)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999999999999999999999999999999999998643 245789999999999999999999999999999
Q ss_pred cccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHHhh
Q psy2383 251 YSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLNAL 329 (391)
Q Consensus 251 fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~~l 329 (391)
|+|||++|+||..||.+.||+|||+||+|+++..+..+++.|.+++.+|++.++++ .|+...+.++.++++.|.+|++|
T Consensus 241 ~a~~g~~~~hn~~yw~~~~~lG~G~gA~s~~~~~~~~~~~~n~~~~~~Y~~~i~~~~~p~~~~~~l~~~e~~~e~~~~~L 320 (380)
T PRK09057 241 HARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWLERVERNGHGIIEEERLDPEERADEFLLMGL 320 (380)
T ss_pred HcCCCchhhhHHHHhCCCCEEEEcCCccccccCCCceEEEecCCCHHHHHHHHHcCCCCcceeeeCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999985111235678899999999999875 68888899999999999999999
Q ss_pred hhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-eEEeCcchHHHHHHHHHHccc
Q psy2383 330 RLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-NIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-~~~lT~~G~~~~~~i~~~f~~ 390 (391)
|+..|+|.+.|+++||.++. ...++.|++.||+..+++ +++||++|++++|+|+..|+.
T Consensus 321 r~~~gid~~~~~~~~g~~~~--~~~l~~l~~~gl~~~~~~~~~~lT~~G~~~~d~i~~~~~~ 380 (380)
T PRK09057 321 RLREGIDLARYAALSGRPLD--PERLADLIEEGLIERDGGSRLRATPAGRLVLDAVVADLAA 380 (380)
T ss_pred HHhCCCCHHHHHHHHCCCch--HHHHHHHHHCCCEEEcCCCEEEECcchhHHHHHHHHHHhC
Confidence 99999999999999998864 367999999999999887 999999999999999998863
No 4
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.9e-85 Score=642.94 Aligned_cols=368 Identities=32% Similarity=0.557 Sum_probs=337.8
Q ss_pred CCceeEeccCCCCCCCCCCCCCccccc------CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHH
Q psy2383 15 PPLSLYIHFPWCIKKCPYCDFHSYEIK------KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLD 88 (391)
Q Consensus 15 ~~~~lYihiPfC~~~C~yC~~~~~~~~------~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~ 88 (391)
.|++||||||||+++|.||+|++.... .....++|+++|++||+.... ....+++|||||||||+++++.+.
T Consensus 9 ~~~~lYiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~--~~~~i~~iy~GGGTps~l~~~~l~ 86 (400)
T PRK07379 9 LPTSAYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPS--FGQPLQTVFFGGGTPSLLSVEQLE 86 (400)
T ss_pred CccEEEEEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhc--cCCceeEEEECCCccccCCHHHHH
Confidence 467999999999999999999765321 123467899999999987532 245799999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN 167 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~ 167 (391)
++++.|++.+++.+++|+|+|+||+++|++.++.|+++||||||||||||||++|+.+||.|+.+++.++++.++++ ++
T Consensus 87 ~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 87 RILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999 98
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
++++|||+|+||||.++|.+|++.+.+++|+||++|+|+++|||+++++. ...+|++++..+||..+.+.|.++||.
T Consensus 167 ~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 167 NFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999999999999999999999999999999999999999998763 245789999999999999999999999
Q ss_pred eecccccccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhc----CCCcceeeecCHhhH
Q psy2383 245 NYEISAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFS----GNSIAKSKKIEKKCL 320 (391)
Q Consensus 245 ~ye~~~fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~----~~~~~~~~~l~~~~~ 320 (391)
|||+|||||||++|+||..||++.||+|||+||+|++++ .|+.|++++.+|++.+++ +.+ ...+.++.+++
T Consensus 247 ~yeisnfa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~----~r~~n~~~~~~y~~~~~~~~~~~~~-~~~~~l~~~~~ 321 (400)
T PRK07379 247 HYEISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNG----QRFTRPRTRKEYYQWVEALIANGGL-IDGEPSSPEDE 321 (400)
T ss_pred eeeeeheECCChHHHHHHHHhcCCcEEEEcCCcceecCC----EEEEcCCCHHHHHHHHHhhhccCCC-cceeeCCHHHH
Confidence 999999999999999999999999999999999999873 689999999999998865 333 35788999999
Q ss_pred HHHHHHHhhhhcCCCChhHHHHHhCCCHH-HHHHHHHHHHHCCCeEEcCCe-EEeCc-chHHHHHHHHHHcc
Q psy2383 321 IFEFMLNALRLKDGFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNNKN-IKPTS-FGRYFLNDLQQIFL 389 (391)
Q Consensus 321 ~~e~~~~~lr~~~g~~~~~~~~~~~~~~~-~~~~~l~~l~~~gl~~~~~~~-~~lT~-~G~~~~~~i~~~f~ 389 (391)
..|.+|++||+.+|+|++.|.++||.++. .+.+.++.|++.||+..++++ ++||+ +|++++|.|+..|+
T Consensus 322 ~~e~l~~~Lr~~~Gl~~~~~~~~~g~~~~~~~~~~l~~l~~~gll~~~~~~~~~lT~~~G~~~~~~i~~~~~ 393 (400)
T PRK07379 322 LLETLMLGLRLAEGVSLSALTERFGKEIVEQILQCLQPYFQQGWVELEGDRRLRLTDPEGFLFSNTVLASLF 393 (400)
T ss_pred HHHHHHhCCcccCCcCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEeCCeEEEECchHHhHHHHHHHHHHH
Confidence 99999999999999999999999999874 467889999999999999998 99995 99999999999886
No 5
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-85 Score=641.86 Aligned_cols=369 Identities=43% Similarity=0.710 Sum_probs=348.2
Q ss_pred CceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccC-CCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILN-RKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 16 ~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
|++||||||||..+|.||+|++...+...+.+.|+++|++||+..+..... ..+++|||||||||+|++++++++++.|
T Consensus 34 ~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l 113 (416)
T COG0635 34 PLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKAL 113 (416)
T ss_pred ceEEEEEcccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHH
Confidence 899999999999999999999998765457889999999999988766654 4799999999999999999999999999
Q ss_pred HHhC-CCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 95 KKLL-LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 95 ~~~~-~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
++.| .+++++|||+|+||++++.++++.++++||||||+||||||+++|+++||.|+.+++.++++.+++. |.++|+|
T Consensus 114 ~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~D 193 (416)
T COG0635 114 RELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINID 193 (416)
T ss_pred HHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999 4788899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP--LSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~--~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
||||+|+||.++|.+|++.+++++|+|||+|.|+++|+|++++... ..+|+.+..++||+.+.+.|.++||.+||+||
T Consensus 194 LIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisn 273 (416)
T COG0635 194 LIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEISN 273 (416)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEeech
Confidence 9999999999999999999999999999999999999999988754 24899999999999999999999999999999
Q ss_pred cccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHHhh
Q psy2383 251 YSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLNAL 329 (391)
Q Consensus 251 fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~~l 329 (391)
||++|++|+||..||+..||+|||+||+|++++ .++.|.++++.|.+.+..+ .++...+.++++++.++.+|++|
T Consensus 274 fa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~----~~~~n~~~~~~y~~~~~~~~~~~~~~~~l~~~d~~~e~~i~gL 349 (416)
T COG0635 274 FAKPGGECRHNLQYWETKDYLGIGAGAHGRIGG----TRYQNKKNLKTYLEAVDEGGLPLVEGEELTPDDLIREALILGL 349 (416)
T ss_pred hcCcchHHHhhhccccCCCeEEECCCceeeecc----EEEEccCCHHHHHHHHhcCCCceeeeeeCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999983 6889999999999999865 68899999999999999999999
Q ss_pred hhcCCCChhHHHHHhCCCHH--HHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 330 RLKDGFSPNLFFERTGINIK--IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~--~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
|+..|++++.+..+||. .. ...+.++.++..|++..+++++++|+.|+++.++|++.|.
T Consensus 350 r~~~gv~~~~~~~~~~~-~~~~~~~~~l~~~~~~Gll~~~~~~~~lt~~g~~~~~~i~~~f~ 410 (416)
T COG0635 350 RLNFGVDLAELEERFGI-FKFAEILELLAELIADGLLELDGDRLRLTEKGRLLLRSIAEAFD 410 (416)
T ss_pred HHhcCCCHHHHHHHhCc-chhhhHHHHHHHHHhCCCEEecCCEEEECCcchhHHHHHHHHHH
Confidence 99999999999999996 33 3578899999999999999999999999999999999885
No 6
>PRK05660 HemN family oxidoreductase; Provisional
Probab=100.00 E-value=3.4e-84 Score=633.49 Aligned_cols=371 Identities=44% Similarity=0.812 Sum_probs=341.8
Q ss_pred CCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 15 ~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
.|++||||||||+.+|.||+|++....+.....+|+++|++||+.......+.++++||||||||++++++++.++++.+
T Consensus 5 ~~~~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l 84 (378)
T PRK05660 5 PPLSLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGV 84 (378)
T ss_pred CceEEEEEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHH
Confidence 47899999999999999999987754333346789999999998654444456899999999999999999999999999
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
++.|++.+++|||+|+||++++.+.++.|+++|+|||||||||++|++|+.++|.|+.+++.++++.++++ +.++++||
T Consensus 85 ~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dl 164 (378)
T PRK05660 85 RARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDL 164 (378)
T ss_pred HHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999 98899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccccccc
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~ 253 (391)
|+|+||||.++|.++++.+.+++|+||++|+|+++|||+++++.. .+|++++.++||..+.+.|.++||.|||+++|||
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~-~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~ 243 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPP-VLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAK 243 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCC-CCcCHHHHHHHHHHHHHHHHHcCCcEeecccccC
Confidence 999999999999999999999999999999999999999988643 5788899999999999999999999999999999
Q ss_pred CCccchhhhhhhcCCcEEEeCcCccccccCCCc-eEEEeecCChHHHHHHHhcCCCcceeeecCHhhHHHHHHHHhhhhc
Q psy2383 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNY-IIRQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNALRLK 332 (391)
Q Consensus 254 ~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~-~~r~~n~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~~~~lr~~ 332 (391)
||++|+||..||++.||+|||+||+|+++..++ ..|++|.+++.+|++. .++...+.++.+++..|.+|++||+.
T Consensus 244 ~~~~~~hn~~~w~~~~~lg~G~gA~s~~~~~~~~~~r~~n~~~~~~y~~~----~~~~~~~~l~~~~~~~e~~~~~Lr~~ 319 (378)
T PRK05660 244 PGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYMQG----RYLDGQRDVEAADRPFEFFMNRFRLL 319 (378)
T ss_pred CChhHHHHHHHhcCCCEEEEcCCccccccCCCCceeeEeecCCHHHHHhc----CCCcccccCChhhHHHHHHHHhchhc
Confidence 999999999999999999999999999863222 3689999999999973 34555678899999999999999999
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
+|+|.+.|.++||.++.+..+.++.|++.||+..++++++||++|++++|+|+..|++
T Consensus 320 ~G~~~~~~~~~~g~~~~~~~~~l~~l~~~gl~~~~~~~~~lt~~G~~~~d~i~~~~~~ 377 (378)
T PRK05660 320 EAAPRADFEAYTGLPESVIRPQLDEALAQGYLTETADHWQITEHGKLFLNDLLELFLA 377 (378)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCEEEECcchhHHHHHHHHHHhc
Confidence 9999999999999998777789999999999999999999999999999999999986
No 7
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.9e-84 Score=631.38 Aligned_cols=363 Identities=33% Similarity=0.554 Sum_probs=331.4
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHH-HHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHH
Q psy2383 12 KKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLID-VELSLPIILNRKIHTIFIGGGTPSLISDTGLDYL 90 (391)
Q Consensus 12 ~~~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~E-i~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~l 90 (391)
...+|++||||||||+++|.||+|++.... .....+|++++++| ++..........+++|||||||||+++++++++|
T Consensus 2 ~~~~~~~lYiHIPFC~~~C~yC~f~~~~~~-~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~~~l~~l 80 (370)
T PRK06294 2 NGKSPLALYIHIPFCTKKCHYCSFYTIPYK-EESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPPALIQDI 80 (370)
T ss_pred CCCCceEEEEEeCCccCcCCCCcCcccCCC-ccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCHHHHHHH
Confidence 345688999999999999999999887533 33567899999999 6654433334579999999999999999999999
Q ss_pred HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccc
Q psy2383 91 LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNF 169 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v 169 (391)
++.|++. +.+|||+|+||++++++.++.|+++|+|||||||||||+++|+.+||.|+.+++.++++.++++ +.++
T Consensus 81 l~~i~~~----~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v 156 (370)
T PRK06294 81 LKTLEAP----HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNL 156 (370)
T ss_pred HHHHHhC----CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 9999764 4689999999999999999999999999999999999999999999999999999999999999 9889
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCcee
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~---~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 246 (391)
++|||+|+||||.++|.++++.+.+++|+||++|+|+++|||++++... ..+|++++.++||..+.+.|.++||.||
T Consensus 157 ~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 236 (370)
T PRK06294 157 SIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRY 236 (370)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCee
Confidence 9999999999999999999999999999999999999999999987532 3468889999999999999999999999
Q ss_pred cccccccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHH
Q psy2383 247 EISAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFM 325 (391)
Q Consensus 247 e~~~fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~ 325 (391)
|++||||||++|+||..||...||||||+||+|++++ .|++|++++++|++.++++ .|+...+.+++++++.|.+
T Consensus 237 eis~fa~~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~----~r~~n~~~l~~Y~~~~~~~~~p~~~~~~l~~~~~~~e~~ 312 (370)
T PRK06294 237 ELASYAKPQAQSKHNTYYWTDRPFLGLGVSASQYLHG----IRSKNLSRISHYLRALRKNLPTQESSEELPPNERIKEAL 312 (370)
T ss_pred eeeeeeCCCchhhhhhhhccCCCEEEEcCCcceecCC----EEEEcCCCHHHHHHHHHcCCCCcccceeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999873 6899999999999999876 6788889999999999999
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
|++||+.+|+|++.|.++ .+.+.++.|++.||+..++++++||++|++++|+|+..|+
T Consensus 313 ~~~Lr~~~Gi~~~~~~~~------~~~~~l~~~~~~gll~~~~~~i~lT~~G~~~~~~i~~~~~ 370 (370)
T PRK06294 313 ALRLRLCEGIPLADFPSE------LTSELIMHPIIQELFTKNDQALSLNKKGRLFHDTIAEEIM 370 (370)
T ss_pred HHhhhccCCCCHHHHHHH------HHHHHHHHHHHCCCEEEECCEEEECcchhhHHHHHHHHhC
Confidence 999999999999998764 2457899999999999999999999999999999999875
No 8
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=1e-82 Score=624.34 Aligned_cols=365 Identities=30% Similarity=0.516 Sum_probs=337.8
Q ss_pred CCceeEeccCCCCCCCCCCCCCcccccC---cccHHHHHHHHHHHHHhccCcc--cCCCeeEEEEeCCCCCCCCHHHHHH
Q psy2383 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKK---NISEKKYLEALLIDVELSLPII--LNRKIHTIFIGGGTPSLISDTGLDY 89 (391)
Q Consensus 15 ~~~~lYihiPfC~~~C~yC~~~~~~~~~---~~~~~~y~~~l~~Ei~~~~~~~--~~~~~~~i~~gGGtps~l~~~~l~~ 89 (391)
+|++||||||||+++|.||+|++..... ....++|+++|.+||+..++.+ ....+++|||||||||+++++++++
T Consensus 1 ~~~~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ 80 (375)
T PRK05628 1 RPFGVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLAR 80 (375)
T ss_pred CCeEEEEEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHH
Confidence 4689999999999999999998875432 1346889999999999876554 3467999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-ccc
Q psy2383 90 LLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNN 168 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~ 168 (391)
|++.+++.+++.+++|+|+|+||++++++.++.|+++||+|||+||||+++++|+.++|.|+.+++.++++.++++ +++
T Consensus 81 ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~ 160 (375)
T PRK05628 81 VLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEH 160 (375)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999888899999999999999999999999999999999999999999999999999999999999999 988
Q ss_pred ceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 169 FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 169 v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~---~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+++|||+|+||||.++|.++++.+.+++|+||++|+|++.|||++++... ...|++++..+||..+.+.|.++||.+
T Consensus 161 v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 240 (375)
T PRK05628 161 VNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (375)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999999999987532 345778889999999999999999999
Q ss_pred ecccccccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHH
Q psy2383 246 YEISAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEF 324 (391)
Q Consensus 246 ye~~~fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~ 324 (391)
|++++|+|||++|+||..||.+.||+|||+||+|++++ .|++|+.++++|++.++++ .|+...+.+++++++.|.
T Consensus 241 ye~s~fa~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~----~~~~n~~~l~~Y~~~v~~~~~p~~~~~~l~~~~~~~e~ 316 (375)
T PRK05628 241 YEVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGG----VRWWNVKHPAAYAARLAAGALPVAGREVLDAEDRHVER 316 (375)
T ss_pred eeeccccCCCcccccchhhcCCCCEEEEccCcccccCC----EEEEcCCCHHHHHHHHHcCCCCcceeeeCCHHHHHHHH
Confidence 99999999999999999999999999999999999973 6899999999999999876 688888999999999999
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
+|++||+..|+|+..+...+ .+.++.|++.|++..++++++||++|++++|.|+..|+|
T Consensus 317 l~~~lr~~~g~~~~~~~~~~-------~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~~~~ 375 (375)
T PRK05628 317 VMLGLRLREGLPLALLDAAE-------RARAARVVADGLLAAEGGRLVLTLRGRLLADAVVRDLLP 375 (375)
T ss_pred HHhccccccCCCHHHHHHHH-------HHHHHHHHHCCCEEEECCEEEEChhhhHHHHHHHHHHhC
Confidence 99999999999999887753 468899999999999999999999999999999999986
No 9
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.5e-82 Score=634.17 Aligned_cols=369 Identities=23% Similarity=0.339 Sum_probs=338.5
Q ss_pred CCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCc--ccCCCeeEEEEeCCCCCCCCHHHHHHHH
Q psy2383 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPI--ILNRKIHTIFIGGGTPSLISDTGLDYLL 91 (391)
Q Consensus 14 ~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~--~~~~~~~~i~~gGGtps~l~~~~l~~ll 91 (391)
.++++||||||||+++|.||+|++... ......+|+++|++||+..+.. .....+++|||||||||+|+++++++|+
T Consensus 59 ~~~~~lYiHIPFC~~~C~yC~f~~~~~-~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~~~l~~ll 137 (449)
T PRK09058 59 ARKRLLYIHIPFCRTHCTFCGFFQNAW-NPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSAEDLARLI 137 (449)
T ss_pred CCceEEEEEeCCcCCcCCCCCCcCcCC-chhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCHHHHHHHH
Confidence 357999999999999999999987643 2345788999999999986542 2345799999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccce
Q psy2383 92 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFN 170 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~ 170 (391)
+.|++.+++.+++|||+|+||+++|+++++.|+++|||||||||||||+++|+.+||.|+.+++.++++.++++ +.+++
T Consensus 138 ~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~ 217 (449)
T PRK09058 138 TALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVV 217 (449)
T ss_pred HHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC---CCCC-CHHHHHHHHHHHHHHHHHCCCcee
Q psy2383 171 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMP-SNDENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 171 ~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~---~~~p-~~~~~~~~~~~~~~~L~~~Gy~~y 246 (391)
+|||||+||||.++|+++++.+.+++|+||++|+|+++|||++++... ..+| ++++..+||..+.+.|.++||.||
T Consensus 218 ~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~y 297 (449)
T PRK09058 218 CDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQL 297 (449)
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999999999999999999999999999999999999999987532 2356 889999999999999999999999
Q ss_pred cccccccCCc-cchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHH
Q psy2383 247 EISAYSKTGY-ESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEF 324 (391)
Q Consensus 247 e~~~fa~~g~-~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~ 324 (391)
|++||+|||+ +|+||..||++.||||||+||+|++++ .++.|++++++|++.++++ .|+...+.+++++++.+.
T Consensus 298 eis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~----~~~~n~~~l~~Y~~~i~~~~~p~~~~~~~~~~~~~~~~ 373 (449)
T PRK09058 298 SNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG----YSYMNHRDLDTYHEAIAAGQKPLMMMMRASPNAPLRAA 373 (449)
T ss_pred eeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC----EEEECCCCHHHHHHHHHcCCCchhhcccCCHHHHHHHH
Confidence 9999999996 599999999999999999999999973 6899999999999999876 677778889999999999
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHH-HHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKI-IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~-~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
++++||+ .|+|++.|. ||.++.. +.+.++.|++.||++.++++++||++|++|+|+|+..|+.
T Consensus 374 i~~~l~~-~~l~~~~~~--~g~~~~~~~~~~l~~~~~~Gll~~~~~~l~lT~~G~~~~~~i~~~~~~ 437 (449)
T PRK09058 374 LKAGLER-GRLDLSELA--LGTPHADHLAPLLAQWQQAGLVELSSDCLRLTLAGRFWAVNLTQGLIE 437 (449)
T ss_pred HHHHhhc-CCccHHHhh--cCCcHHHHHHHHHHHHHHCCCEEEECCEEEECCCcccHHHHHHHHHHH
Confidence 9999998 589999998 9988654 5778999999999999999999999999999999988863
No 10
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.2e-81 Score=612.63 Aligned_cols=366 Identities=38% Similarity=0.602 Sum_probs=338.2
Q ss_pred CCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 15 ~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
++++||||||||+++|.||++++.... .....+|+++|++||+... ....+++||||||||++++++.++.|++.+
T Consensus 2 ~~~~lYiHiPfC~~~C~yC~~~~~~~~-~~~~~~y~~~l~~Ei~~~~---~~~~~~~i~~gGGtps~l~~~~l~~L~~~i 77 (374)
T PRK05799 2 KEISLYIHIPFCKQKCLYCDFPSYSGK-EDLMMEYIKALSKEIRNST---KNKKIKSIFIGGGTPTYLSLEALEILKETI 77 (374)
T ss_pred CceEEEEEeCCccCCCCCCCCCcccCC-cchHHHHHHHHHHHHHhhc---CCCceeEEEECCCcccCCCHHHHHHHHHHH
Confidence 568999999999999999999887543 2346779999999997532 334689999999999999999999999999
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
++ +++.+.+++++|+||+++|++.++.|+++|++||||||||++|++|+.+||.|+.+++.++++.++++ ++++++|+
T Consensus 78 ~~-~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dl 156 (374)
T PRK05799 78 KK-LNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDL 156 (374)
T ss_pred Hh-CCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 75 67777889999999999999999999999999999999999999999999999999999999999999 98899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
|+|+||||.++|.++++.+.+++|+||++|+|++.|||++++.. ...+|++++..+||..+.+.|.++||.|||+++
T Consensus 157 i~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~ 236 (374)
T PRK05799 157 MFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISN 236 (374)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeee
Confidence 99999999999999999999999999999999999999987643 235788999999999999999999999999999
Q ss_pred cccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHHhh
Q psy2383 251 YSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLNAL 329 (391)
Q Consensus 251 fa~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~~l 329 (391)
|||||++|+||..||+..||+|||+||+|++++ .++.|++++++|++.++++ .|+...+.++.+++..+.++++|
T Consensus 237 fa~~~~~~~hn~~yw~~~~~~g~G~gA~s~~~~----~~~~n~~~~~~y~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~l 312 (374)
T PRK05799 237 FAKPGKECRHNLVYWDLEEYIGCGAGAHSYVNG----KRYENISNIEKYIKEINENNSAVEEIHKNSIKDNMEEFMFMGL 312 (374)
T ss_pred eECCCcchhhHHHHhcCCCEEEEcCCccccCCC----EEEecCCCHHHHHHHHhcCCCccceeeeCCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999973 6899999999999999875 68888899999999999999999
Q ss_pred hhcCCCChhHHHHHhCCCHH-HHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 330 RLKDGFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~-~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
|+..|+|.+.|.++||.++. .+.+.++.|++.||+..++++++||++|++++|+|+..|+
T Consensus 313 r~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~~~ 373 (374)
T PRK05799 313 RKIKGICIEDFKKRFGKNIYEVYGEVINKYIKLGLLIEKEGRIYLSERGIEVSNSIMSDFL 373 (374)
T ss_pred HhhCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEECCEEEEChhHHHHHHHHHHHHh
Confidence 99999999999999999875 4678899999999999999999999999999999999886
No 11
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=100.00 E-value=2.5e-80 Score=604.05 Aligned_cols=357 Identities=35% Similarity=0.536 Sum_probs=331.6
Q ss_pred ceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHH
Q psy2383 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKK 96 (391)
Q Consensus 17 ~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~ 96 (391)
++||||||||+.+|.||+|++.... .....+|++++++||+.....++...+++||||||||++++++++.++++.|++
T Consensus 1 l~lYiHiPFC~~~C~yC~f~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~ 79 (360)
T TIGR00539 1 MSLYIHIPFCENKCGYCDFNSYENK-SGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQ 79 (360)
T ss_pred CEEEEEeCCCcCcCCCCCCcccCcC-ccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHH
Confidence 4899999999999999999887543 234678999999999876444444569999999999999999999999999999
Q ss_pred hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec
Q psy2383 97 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 97 ~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~ 175 (391)
.+++.+++|+++|+||+++|++.++.|+++||+|||+||||+++++|+.+||.|+.+++.++++.++++ +.++++|+|+
T Consensus 80 ~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 80 HASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 998888899999999999999999999999999999999999999999999999999999999999999 9889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccccccCC
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 255 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~g 255 (391)
|+||||.++|.++++.+.+++|+||++|+|+++|||++++... ..|++++.++||..+.+.|.++||.+||+++|+|||
T Consensus 160 GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~ 238 (360)
T TIGR00539 160 GLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAK-KLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKAG 238 (360)
T ss_pred CCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhh-cCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcCCC
Confidence 9999999999999999999999999999999999999988654 478899999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHHhhhhcCC
Q psy2383 256 YESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLNALRLKDG 334 (391)
Q Consensus 256 ~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~~lr~~~g 334 (391)
++|+||..||...||+|||+||+|++++ .|+.|++++++|++.+.++ .|+...+.++.++++.|.+|++||+..|
T Consensus 239 ~~~~hn~~yw~~~~~lg~G~~A~s~~~~----~~~~n~~~~~~Y~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~Lr~~~g 314 (360)
T TIGR00539 239 YQVKHNLAYWGAKDYLGCGAGAHGCVAN----ERFFAKKLIKNYIKDPLQRGVETLNEKNVPKQDKRLEKLFLGLRCVLG 314 (360)
T ss_pred HHHHHHHHhcCCCCEEEEcCCccccCCC----eEEEecCCHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999973 6899999999999999765 6777788899999999999999999999
Q ss_pred CChhHHHHHhCCCHHH-HHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKI-IESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
+|++.|.++||.++.+ +...++.+++.|++..+++++.+|..|++
T Consensus 315 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~ 360 (360)
T TIGR00539 315 VEKSFFDENKGLSQVKFLIEENKAFIKNNRLINSDSFMADEHALWL 360 (360)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEeehhhC
Confidence 9999999999998754 57789999999999999999999999974
No 12
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.9e-80 Score=605.05 Aligned_cols=369 Identities=35% Similarity=0.581 Sum_probs=341.7
Q ss_pred CceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHH
Q psy2383 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 16 ~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~ 95 (391)
|++||||||||+++|.||+|++.... .....+|+++|++||+.... ....++++||||||||++++++.+.++++.++
T Consensus 1 ~~~lYihiPfC~~~C~yC~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~-~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~ 78 (377)
T PRK08599 1 PTSAYIHIPFCEHICYYCDFNKVFIK-NQPVDEYLDALIKEMNTYAI-RPFDKLKTIYIGGGTPTALSAEQLERLLTAIH 78 (377)
T ss_pred CceEEEEeCCcCCCCCCCCCeeeccC-ccCHHHHHHHHHHHHHHhhh-cCCCceeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 68999999999999999999876432 24578899999999976432 33467999999999999999999999999999
Q ss_pred HhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe
Q psy2383 96 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI 174 (391)
Q Consensus 96 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI 174 (391)
+.+++.+.++|++|+||++++++.++.|+++|++||||||||+++++|+.++|+|+.+++.++++.++++ ++++++|+|
T Consensus 79 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli 158 (377)
T PRK08599 79 RNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLI 158 (377)
T ss_pred HhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeee
Confidence 9998877789999999999999999999999999999999999999999999999999999999999999 988999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCceeccccc
Q psy2383 175 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251 (391)
Q Consensus 175 ~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~f 251 (391)
+|+||||.+++.++++.+.+++++||++|+|+++|||++++.. ...+|+++...+||..+.+.|.++||.+|++++|
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~f 238 (377)
T PRK08599 159 YALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNF 238 (377)
T ss_pred cCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeee
Confidence 9999999999999999999999999999999999999997653 2346888899999999999999999999999999
Q ss_pred ccCCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHHhhh
Q psy2383 252 SKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLNALR 330 (391)
Q Consensus 252 a~~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~~lr 330 (391)
+|||++|+||..||.+.||+|||+||+|++++ .++.|++++++|++.++++ .|+...+.++.++++.+.++++||
T Consensus 239 a~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~----~~~~n~~~~~~Y~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~Lr 314 (377)
T PRK08599 239 AKPGFESRHNLTYWNNEEYYGFGAGASGYVNG----VRYQNIGPIKHYLKAINEEGLPRLEEHVLTKKEQMEEEMFLGLR 314 (377)
T ss_pred eCCChHHHHHHHHhcCCcEEEEccCcccccCC----EEEEcCCCHHHHHHHHhcCCCccceeeeCCHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999973 6889999999999999775 678888999999999999999999
Q ss_pred hcCCCChhHHHHHhCCCHHH-HHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 331 LKDGFSPNLFFERTGINIKI-IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~-~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
+..|+|.+.+.++||.++.+ +.+.++.|++.||+..++++++||++|++++|.|+..|+.
T Consensus 315 ~~~gl~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~lt~~G~~~~~~i~~~~~~ 375 (377)
T PRK08599 315 KKSGVSKARFEEKFGQSFEDVFGETIQELQEQGLLEEDDDHVRLTKKGKFLGNEVFEAFLL 375 (377)
T ss_pred hhCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEECCEEEECccHhHHHHHHHHHHhh
Confidence 99999999999999998765 5788999999999999999999999999999999998874
No 13
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.8e-79 Score=594.81 Aligned_cols=348 Identities=35% Similarity=0.530 Sum_probs=313.7
Q ss_pred eeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 18 ~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
+||||||||+.+|.||+|++... ......+|+++|++||+...+.+++.++++|||||||||+++++++.+|++.|++.
T Consensus 2 ~lYiHiPFC~~~C~yC~f~~~~~-~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~ 80 (350)
T PRK08446 2 LLYIHIPFCESKCGYCAFNSYEN-KHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPY 80 (350)
T ss_pred eEEEEeCCccCcCCCCCCcCcCC-CcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh
Confidence 89999999999999999988743 23456789999999999754444456799999999999999999999999999987
Q ss_pred CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC
Q psy2383 98 LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA 176 (391)
Q Consensus 98 ~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G 176 (391)
+.+++|+|+|+||++++++.++.|+++||||||||||||++++|+.+||.|+.+++.++++.++++ |.+|++|||+|
T Consensus 81 --~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~G 158 (350)
T PRK08446 81 --LSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYD 158 (350)
T ss_pred --cCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 566789999999999999999999999999999999999999999999999999999999999999 98899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccccccCCc
Q psy2383 177 LPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTGY 256 (391)
Q Consensus 177 lPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~g~ 256 (391)
+||||.++|.++++.+.+++|+||++|+|+++|||+++++.. ..++++ +|+..+.+.|.++||.+||++|||| |+
T Consensus 159 lPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~-~~~~~~---~~~~~~~~~l~~~Gy~~yeis~fa~-~~ 233 (350)
T PRK08446 159 TPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNH-KKKDDE---NLAKFFIEQLEELGFKQYEISNFGK-NY 233 (350)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhh-cCCCHH---HHHHHHHHHHHHCCCcEEEeehhhC-cc
Confidence 999999999999999999999999999999999999988654 234443 4899999999999999999999999 99
Q ss_pred cchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcCCCcceeeecCHhhHHHHHHHHhhhhcCCCC
Q psy2383 257 ESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNALRLKDGFS 336 (391)
Q Consensus 257 ~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~~~~lr~~~g~~ 336 (391)
+|+||..||...||||||+||+|++++ .|++|++++++|++.. +....+.++++++..|.+|++||+.+|+|
T Consensus 234 ~~~hn~~yw~~~~~lg~G~gA~s~~~~----~~~~n~~~~~~y~~~~----~~~~~~~l~~~~~~~e~~~~~Lr~~~g~~ 305 (350)
T PRK08446 234 QCKHNLGYWQGKDYLGCGAGAVGFVAN----KRFYPKKNLENYIKNP----LKREIETLSEEDLRLEKLFLGLRSIVGVD 305 (350)
T ss_pred hhhhHHHHhCCCCEEEEcCCcccccCC----eEEEecCCHHHHHhch----hhcccccCCHHHHHHHHHHHHHHhhCCcC
Confidence 999999999999999999999999873 6889999999999852 22233469999999999999999999999
Q ss_pred hhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 337 PNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
++.|.++ ..+.++.+++.||+..++++ +|++|++++|.|+..|++
T Consensus 306 ~~~~~~~-------~~~~l~~l~~~gl~~~~~~~--l~~~g~~~~d~i~~~~~~ 350 (350)
T PRK08446 306 LSILNQK-------EEKKVKILIEENKLFIKNNR--LYNKDFFLADEIALFLLS 350 (350)
T ss_pred HHHHHHH-------HHHHHHHHHHCCCEEeeCCE--EcccchhhHHHHHHHhhC
Confidence 9998865 35688999999999999998 568999999999988763
No 14
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.2e-79 Score=589.92 Aligned_cols=346 Identities=29% Similarity=0.462 Sum_probs=307.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCCcccccC--cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHH
Q psy2383 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKK--NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYL 90 (391)
Q Consensus 13 ~~~~~~lYihiPfC~~~C~yC~~~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~l 90 (391)
..++.+||||||||+.+|.||+|++..... .....+|++.+.+|++. +.+.++++|||||||||+|+++.+++|
T Consensus 3 ~~~~~~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~----~~~~~~~tiy~GGGTPs~L~~~~l~~l 78 (353)
T PRK05904 3 NKKTKHLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKN----FKIKQFKTIYLGGGTPNCLNDQLLDIL 78 (353)
T ss_pred CCCeeEEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHH----hcCCCeEEEEECCCccccCCHHHHHHH
Confidence 457889999999999999999998874221 12234455555555443 234579999999999999999999999
Q ss_pred HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccc
Q psy2383 91 LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNF 169 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v 169 (391)
++.|++.+ .++.|||+|+||++++++.++.|+++|++|||+||||+++++|+.+||.|+.+++.++++.++++ +.++
T Consensus 79 l~~i~~~~--~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v 156 (353)
T PRK05904 79 LSTIKPYV--DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNI 156 (353)
T ss_pred HHHHHHhc--CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 99999985 45689999999999999999999999999999999999999999999999999999999999999 8889
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~ 249 (391)
++|+|+|+||||.++|.++++.+.+++|+||++|+|+++|||++++... .++++...+|+..+.+.|.+.||.|||+|
T Consensus 157 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~--~~~~~~~~~~~~~~~~~L~~~Gy~~yeis 234 (353)
T PRK05904 157 SCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY--TIDEDKEAEQLNYIKAKFNKLNYKRYEVS 234 (353)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCC--CCChHHHHHHHHHHHHHHHHcCCcEEech
Confidence 9999999999999999999999999999999999999999999988643 46788899999999999999999999999
Q ss_pred cccc-CCccchhhhhhhcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcCCCcceeeecCHhhHHHHHHHHh
Q psy2383 250 AYSK-TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNA 328 (391)
Q Consensus 250 ~fa~-~g~~~~~n~~yw~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 328 (391)
|||+ ||++|+||..||++.||+|||+||+|++++ .|+.|++++.+|+.. .+.+++++++.|.+|++
T Consensus 235 nfa~~~~~~~~hn~~yw~~~~ylg~G~gA~s~~~~----~r~~n~~~~~~y~~~---------~~~l~~~e~~~e~~~l~ 301 (353)
T PRK05904 235 NWTNNFKYISKHNLAYWRTKDWAAIGWGAHGFENN----IEYFFDGSIQNWILI---------KKVLTDHELYQQILIMG 301 (353)
T ss_pred hhcCCCCccccchHhHhCCCCEEEEcCCcCcccCC----eEEEeCCCHHHHhhc---------CcCCCHHHHHHHHHHHH
Confidence 9999 899999999999999999999999999873 689999999999852 34689999999999999
Q ss_pred hhhcCCCChhHHHHHhCCCHHHH-HHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 329 LRLKDGFSPNLFFERTGINIKII-ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
||+.+|+|.+.|. |.++..+ ...++. |++.++++++|| |++++|.|+..|+
T Consensus 302 Lr~~~Gi~~~~~~---~~~~~~~~~~~~~~-----~l~~~~~~~~~t--g~~~~~~~~~~~~ 353 (353)
T PRK05904 302 LRLKDGLDLNKEI---NKEAYLYFKNKLKH-----ISINKNNHLRAD--NIDLLNLSIIDIF 353 (353)
T ss_pred HHhhCCccHHHhc---CCCHHHHHHHHHHH-----HHhhcCCEEEEE--cHhHHHHHHHHhC
Confidence 9999999999998 8887654 455555 778889999999 9999999998875
No 15
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=100.00 E-value=1.1e-77 Score=597.07 Aligned_cols=373 Identities=24% Similarity=0.390 Sum_probs=337.5
Q ss_pred CCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 14 ~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
.+|++||||||||+++|+||+|++..........+|+++|++||+...+......+.+||||||||++++++++.+|++.
T Consensus 37 ~~~~~lYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~ 116 (430)
T PRK08208 37 EDALSLYIHIPFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDS 116 (430)
T ss_pred CCceEEEEEeCCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHH
Confidence 36889999999999999999998875433335678999999999976554455679999999999999999999999999
Q ss_pred HHHhCCCCC-CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE
Q psy2383 94 IKKLLLFKK-NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL 171 (391)
Q Consensus 94 i~~~~~~~~-~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~ 171 (391)
|++.+++.+ ++++|+|++|++++++.++.|+++|++||||||||+++++|+.++|+|+.+++.++++.++++ ++++++
T Consensus 117 i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~ 196 (430)
T PRK08208 117 VERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNI 196 (430)
T ss_pred HHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 999988866 689999999999999999999999999999999999999999999999999999999999999 988899
Q ss_pred eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccccc
Q psy2383 172 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~f 251 (391)
|||+|+||||.++|.++++.+.+++|+||++|+|++.|||++++.. .+++++..+||..+.+.|.++||.+|++++|
T Consensus 197 dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~---~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~f 273 (430)
T PRK08208 197 DLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRA---RAWDDQRLSLYRLARDLLLEAGYTQTSMRMF 273 (430)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhc---CCCHHHHHHHHHHHHHHHHHcCCeEEeecce
Confidence 9999999999999999999999999999999999999999998864 4778899999999999999999999999999
Q ss_pred ccCCccchhhhhhh-cCCcEEEeCcCccccccCCCc----eEEEeecCC-hHHHHHHHhcCCCcceeeecCHhhHHHHHH
Q psy2383 252 SKTGYESQHNLNYW-KFGDYLGIGAGSHSKLSFPNY----IIRQIRYKN-PNIYLKNIFSGNSIAKSKKIEKKCLIFEFM 325 (391)
Q Consensus 252 a~~g~~~~~n~~yw-~~~~~lG~G~gA~s~~~~~~~----~~r~~n~~~-~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~ 325 (391)
+|+|++++||..|| ...||||||+||+|++++... ..|+.|.++ +++|++... ..|+...+.++.+++..+.+
T Consensus 274 ar~~~~~~~~~~~~~~~~~~lG~G~gA~s~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~-~~~~~~~~~l~~~~~~~~~~ 352 (430)
T PRK08208 274 RRNDAPDKGAPAYSCQTDGMLGLGCGARSYTGNLHYSSPYAVNQQTIRSIIDDYIATPD-FTVAEHGYLLSEDEMKRRFI 352 (430)
T ss_pred ecCCcccCCCCccccCCCCEEEecCCeeecCCCCccccchhcccccccccHHHHHHhcC-CCCceeeeeCCHHHHHHHHH
Confidence 99999999999996 789999999999999974210 124456675 889998632 25667778899999999999
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
|++||+..|+|++.|.++||.++....+.++.|++.||+..++++++||++|++|.|.|+..|+.
T Consensus 353 ~~~Lr~~~gl~~~~~~~~~g~~~~~~~~~l~~l~~~gll~~~~~~l~lT~~G~~~~d~i~~~~~~ 417 (430)
T PRK08208 353 IKSLLQAQGLDLADYRQRFGSDPLRDFPELELLIDRGWLEQNGGRLRLTEEGLALSDAIGPVFIS 417 (430)
T ss_pred HHHHHHhCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEECcchhhHHHHHHHHHcC
Confidence 99999999999999999999998667788999999999999999999999999999999999874
No 16
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.8e-77 Score=596.78 Aligned_cols=372 Identities=20% Similarity=0.379 Sum_probs=338.1
Q ss_pred CCCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc-CCCeeEEEEeCCCCCCCCHHHHHHHH
Q psy2383 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL-NRKIHTIFIGGGTPSLISDTGLDYLL 91 (391)
Q Consensus 13 ~~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~i~~gGGtps~l~~~~l~~ll 91 (391)
..++++||||||||+++|.||+|++..........+|+++|++||+..+..+. +.++.+||||||||++++++++.+|+
T Consensus 47 ~~~~~~LYvHIPfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll 126 (453)
T PRK13347 47 PEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLM 126 (453)
T ss_pred CCCceEEEEEeCCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHH
Confidence 34678999999999999999999876543334567899999999997655443 45799999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccce
Q psy2383 92 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFN 170 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~ 170 (391)
+.|++.|++..++++++|+||+++|++.++.|+++|++||||||||+++++++.++|.|+.+++.++++.++++ +.+++
T Consensus 127 ~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~ 206 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESIN 206 (453)
T ss_pred HHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999 98899
Q ss_pred EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCceecc
Q psy2383 171 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY--PPLSMPSNDENAVMQDKITSLLKNNYYKNYEI 248 (391)
Q Consensus 171 ~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~--~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~ 248 (391)
+|||+|+||||.++|.++++.+.+++|+||++|+|+..|++...++ ....+|+.++..+||..+.+.|.++||.+|++
T Consensus 207 ~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~~~ 286 (453)
T PRK13347 207 FDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPIGL 286 (453)
T ss_pred EeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 9999999999999999999999999999999999986665432222 12357899999999999999999999999999
Q ss_pred cccccCCcc----------chhhhhhh--cCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeec
Q psy2383 249 SAYSKTGYE----------SQHNLNYW--KFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKI 315 (391)
Q Consensus 249 ~~fa~~g~~----------~~~n~~yw--~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l 315 (391)
++|+||+++ |+||..|| ...||||||+||+|++++ .+++|++++.+|+++++++ .|+..+..+
T Consensus 287 ~~far~~~~~~~a~~~g~l~r~~~~Y~~~~~~~~lGlG~gA~s~~~~----~~~~N~~~l~~Y~~~i~~g~~p~~~~~~l 362 (453)
T PRK13347 287 DHFALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPG----GYVQNISSLKAYYRAIDAGRLPIERGYAL 362 (453)
T ss_pred cceeCCCchhhHHHhcCcccccccccCCCCCCcEEEECcCceeCCCC----ceEECCCCHHHHHHHHHCCCCCeeeeecC
Confidence 999999988 99999999 478999999999999973 5788999999999999876 788899999
Q ss_pred CHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHH---HHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHc
Q psy2383 316 EKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKII---ESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388 (391)
Q Consensus 316 ~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~---~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f 388 (391)
+.++++.+.++++||+..|+|.+.|.++||.++..+ .+.|+.|++.||++.++++++||++|++|+|+|+..|
T Consensus 363 ~~~~~~~~~~~~~L~~~~~ld~~~~~~~~g~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f 438 (453)
T PRK13347 363 SDDDRLRRAIIETLMCNFPVDLAAIAARHGFFARYFLDELARLEPLAADGLVTIDGGGIRVTPEGRPLIRAVAAAF 438 (453)
T ss_pred CHHHHHHHHHHHHHHhhCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECcchhHHHHHHHHHH
Confidence 999999999999999999999999999999986533 4789999999999999999999999999999999876
No 17
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=3.8e-75 Score=582.79 Aligned_cols=371 Identities=22% Similarity=0.391 Sum_probs=333.8
Q ss_pred CCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc-CCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL-NRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 15 ~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
+|++||||||||+.+|.||+|++..........+|+++|++||+..++.+. +.++.+||||||||++++++++.+|++.
T Consensus 48 ~~~~LYvHIPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~ 127 (453)
T PRK09249 48 RPLSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMAL 127 (453)
T ss_pred CceEEEEEeCCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHH
Confidence 678999999999999999999877543334567899999999997655443 5679999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
+++.+++.+++++++|+||+++|++.++.|+++|++||||||||+++++|+.++|.++.+++.++++.++++ +.++++|
T Consensus 128 l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~d 207 (453)
T PRK09249 128 LREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINID 207 (453)
T ss_pred HHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999888899999999999999999999999999999999999999999999999999999999999999 8789999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY--PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~--~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
+|+|+||||.++|.++++.+.+++|+||++|+|++.|++....+ ....+|+.++..+||..+.+.|.++||.+|++++
T Consensus 208 li~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s~ 287 (453)
T PRK09249 208 LIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMDH 287 (453)
T ss_pred EEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEeccc
Confidence 99999999999999999999999999999999997666532221 1224688999999999999999999999999999
Q ss_pred cccCCcc---chhhhhhhc---------CCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCH
Q psy2383 251 YSKTGYE---SQHNLNYWK---------FGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEK 317 (391)
Q Consensus 251 fa~~g~~---~~~n~~yw~---------~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~ 317 (391)
|+|||++ |+||..||+ ..||+|||+||+|++++ .++.|++++.+|++.++++ .|+...+.++.
T Consensus 288 far~~~~~~~~~~n~~~~~~~~~y~~~~~~~~iglG~gA~s~~~~----~~~~n~~~l~~Y~~~i~~~~~p~~~~~~ls~ 363 (453)
T PRK09249 288 FALPDDELAIAQREGTLHRNFQGYTTDGDCDLIGLGVSAISRIGD----GYAQNEKDLKAYYAAVDAGRLPTARGHALTA 363 (453)
T ss_pred eeCCCchHHHHHHhCccccccceeccCCCCeEEEECcCcccCCCC----eeeECCCCHHHHHHHHHCCCCCeeecccCCH
Confidence 9999986 899976654 47999999999999973 6889999999999999876 68888889999
Q ss_pred hhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHH-HH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 318 KCLIFEFMLNALRLKDGFSPNLFFERTGINIKI-IE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 318 ~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~-~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
++++.+.++++||+..|||.+.|+++||.++.+ +. +.++.|++.||+..++++++||++|++++|+|+..|-
T Consensus 364 ~~~~~~~~~~~Lr~~~gl~~~~~~~~fg~~~~~~~~~~~~~l~~l~~~gll~~~~~~~~lT~~G~~~~d~i~~~f~ 439 (453)
T PRK09249 364 DDRLRRDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEELERLAPLEADGLVELDENGITVTPKGRLLVRNIAMAFD 439 (453)
T ss_pred HHHHHHHHHHHHhhcCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEECccchHHHHHHHHHHH
Confidence 999999999999999999999999999998754 33 3468999999999999999999999999999998774
No 18
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=100.00 E-value=5.7e-75 Score=582.23 Aligned_cols=372 Identities=25% Similarity=0.407 Sum_probs=335.5
Q ss_pred CCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc-CCCeeEEEEeCCCCCCCCHHHHHHHHH
Q psy2383 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL-NRKIHTIFIGGGTPSLISDTGLDYLLK 92 (391)
Q Consensus 14 ~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~i~~gGGtps~l~~~~l~~ll~ 92 (391)
..|++||||||||+++|.||++++....+.....+|+++|++||+.....+. ..++++||||||||++++++++.+|++
T Consensus 47 ~~~~~lYiHiPFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~ 126 (455)
T TIGR00538 47 KTPLSLYVHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMK 126 (455)
T ss_pred CCceEEEEEeCCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHH
Confidence 3578999999999999999999887543333567799999999998655443 257999999999999999999999999
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE
Q psy2383 93 NIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL 171 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~ 171 (391)
.+++.+++..++++++|+||++++++.++.|+++|++||||||||+++++|+.++|.|+.+++.++++.++++ +.++++
T Consensus 127 ~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~ 206 (455)
T TIGR00538 127 LIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINI 206 (455)
T ss_pred HHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998888899999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCC-cccCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q psy2383 172 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNT-YFFKY-PPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT-~l~~~-~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~ 249 (391)
|+|+|+||||.++|.++++.+.+++|+||++|+|++.|++ +..+. ....+|++++..+|+..+.+.|.++||.+|+++
T Consensus 207 dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~ 286 (455)
T TIGR00538 207 DLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMD 286 (455)
T ss_pred eEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 9999999999999999999999999999999999988874 32221 123468899999999999999999999999999
Q ss_pred ccccCCccc----------hhhhhhhc--CCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecC
Q psy2383 250 AYSKTGYES----------QHNLNYWK--FGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIE 316 (391)
Q Consensus 250 ~fa~~g~~~----------~~n~~yw~--~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~ 316 (391)
+|+||++++ +||..||. ..||+|||+||+|++++ .+++|++++.+|++.++++ .|+...+.++
T Consensus 287 ~fa~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~lG~G~gA~s~~~~----~~~~n~~~~~~Y~~~~~~~~~pv~~~~~ls 362 (455)
T TIGR00538 287 HFAKPDDELAVAQRKGELHRNFQGYTTQKDTDLLGFGVTSISMLGD----CYAQNQKTLKQYYKAVDEGGNPVERGIALS 362 (455)
T ss_pred ceeCCChHHHHHHhhCcceeccccccCCCCCcEEEeCcceeeCCCC----eeEECCCCHHHHHHHHHCCCCCeeecccCC
Confidence 999999875 67789999 78999999999999973 6889999999999999876 6888899999
Q ss_pred HhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHH-HHH---HHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 317 KKCLIFEFMLNALRLKDGFSPNLFFERTGINIKI-IES---KLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 317 ~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~-~~~---~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
.++++.+.++++||+..|+|.+.|.++||.++.. +.. .|+.|++.||+..++++++||++|++++|+|+..|-
T Consensus 363 ~~~~~~~~~~~~l~~~~gl~~~~~~~~~g~~~~~~~~~~~~~l~~l~~~gll~~~~~~~~lT~~G~~~~~~i~~~f~ 439 (455)
T TIGR00538 363 QDDCIRREVIKSLMCNFKLDYSKIEEKFDLDFADYFAKELELLKPLEEDGLLDVDEKGIEVTPKGRLLIRNIAMVFD 439 (455)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCEEEECCEEEECcCChHHHHHHHHHHH
Confidence 9999999999999999999999999999998754 333 477899999999999999999999999999998774
No 19
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=6.1e-75 Score=574.83 Aligned_cols=360 Identities=26% Similarity=0.420 Sum_probs=319.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 14 ~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
.++++||||||||+++|+||+|++.... .....+|+++|++||+..... +..+++|||||||||++ ++++.++++.
T Consensus 50 ~~~~~LYvHIPFC~~~C~yC~f~~~~~~-~~~~~~Y~~~L~~Ei~~~~~~--~~~~~siy~GGGTPs~l-~~~L~~ll~~ 125 (433)
T PRK08629 50 GKKYMLYAHVPFCHTLCPYCSFHRFYFK-EDKARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTIL-EDELAKTLEL 125 (433)
T ss_pred CCcEEEEEEeCCccCcCCCCCCcCcCCC-cchHHHHHHHHHHHHHHHHhc--CCceEEEEECCCccccC-HHHHHHHHHH
Confidence 4568999999999999999999987532 334677999999999976542 45799999999999998 7899999999
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHh---hcccce
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ---YFNNFN 170 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~---~~~~v~ 170 (391)
+++.|++ .|||+|++|+++|++.++.|+++ |||||+|||||||++|+.+||.|+..+..++++.+++ .+++++
T Consensus 126 i~~~f~i---~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~ 201 (433)
T PRK08629 126 AKKLFSI---KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIIN 201 (433)
T ss_pred HHHhCCC---ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEE
Confidence 9999865 49999999999999999999999 9999999999999999999999987666555555444 467799
Q ss_pred EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 171 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 171 ~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
+|||+|+||||.++|.+|++.+.+++|+||++|+|+++|+|.........+|+++...+||..+.+.|. ||.||++++
T Consensus 202 ~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~--Gy~~~s~~~ 279 (433)
T PRK08629 202 VDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG--QYNQLSAWA 279 (433)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC--CCeEecccc
Confidence 999999999999999999999999999999999999999998654433356888888999999988887 999999999
Q ss_pred cccCCccchhhhhh-hcCCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCHhhHHHHHHHHh
Q psy2383 251 YSKTGYESQHNLNY-WKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEKKCLIFEFMLNA 328 (391)
Q Consensus 251 fa~~g~~~~~n~~y-w~~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~~~~~~e~~~~~ 328 (391)
|++++. .||..| |...||+|||+||+|++++ .+++|+.++++|++.++++ .|+...+.+++++++.+.++++
T Consensus 280 f~~~~~--~~~~~y~~~~~~ylGlG~gA~s~~~~----~~~~N~~~l~~Y~~~i~~g~~pv~~~~~ls~~e~~~~~~~~~ 353 (433)
T PRK08629 280 FSKKND--EGFDEYVIDYDEYLGVGSGSFSFLDG----TLYVNTFSLRDYQERIAAGQMGVIAQKNFSKKEVMQYRFLLG 353 (433)
T ss_pred cCCCCc--hhhceeeccCCeEEEEcCCeeEecCC----eEEEcCCCHHHHHHHHHcCCCCeeeeeeCCHHHHHHHHHHHH
Confidence 999875 578888 6789999999999999973 6899999999999999876 6888889999999999999999
Q ss_pred hhhcCCCChhHHHHHhCCCHHH-HHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 329 LRLKDGFSPNLFFERTGINIKI-IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~-~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
|| ..|+|++.|.++||.++.. +..+++.|++.|++..++++|+||++|++++|.|+..|+.
T Consensus 354 L~-~~gld~~~f~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~~~~d~i~~~f~~ 415 (433)
T PRK08629 354 MF-SGRLSIKYFRETFGVNLDKALFKEMLLLKLIGAIKNDPGDLIVTDFGKYLGVVMMKEFYT 415 (433)
T ss_pred HH-hCCcCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCEEEECcchhHHHHHHHHHHHh
Confidence 97 6799999999999999865 6788999999999999999999999999999999999873
No 20
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=5.3e-65 Score=508.79 Aligned_cols=292 Identities=32% Similarity=0.499 Sum_probs=264.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCCccccc-CcccHHHHHHHHHHHHHhccCccc--CCCeeEEEEeCCCCCCCCHHHHHH
Q psy2383 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIIL--NRKIHTIFIGGGTPSLISDTGLDY 89 (391)
Q Consensus 13 ~~~~~~lYihiPfC~~~C~yC~~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~i~~gGGtps~l~~~~l~~ 89 (391)
..++++|||||||||.+|.||+|++.... ......+|+++|++||+.....+. +.++.+|||||||||+++++++.+
T Consensus 160 ~~~~~sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~L~~ 239 (488)
T PRK08207 160 DKNEVSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEELER 239 (488)
T ss_pred CCCceEEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHHHHH
Confidence 45789999999999999999999887422 233467899999999997654433 457999999999999999999999
Q ss_pred HHHHHHHhC-CCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-c
Q psy2383 90 LLKNIKKLL-LFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 166 (391)
Q Consensus 90 ll~~i~~~~-~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~ 166 (391)
|++.+++.+ ++....++|+|+ +|+++|+++++.|+++|++|||||+||+++++|+.+||.|+.+++.++++.++++ +
T Consensus 240 Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf 319 (488)
T PRK08207 240 LLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGF 319 (488)
T ss_pred HHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Confidence 999999988 566667999998 9999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP-LSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~-~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+++++|||+|+||||.+++.+|++.+.+++|+|+++|+|++.|||++++... ..+|++++..+|+..+.+.|.++||.+
T Consensus 320 ~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~ 399 (488)
T PRK08207 320 DNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVP 399 (488)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHh
Confidence 7899999999999999999999999999999999999999999999987542 357899999999999999999999999
Q ss_pred e------------cccccccCCccchhhhhhhc-CCcEEEeCcCccccccCCC--ceEEEeecCChHHHHHHHh
Q psy2383 246 Y------------EISAYSKTGYESQHNLNYWK-FGDYLGIGAGSHSKLSFPN--YIIRQIRYKNPNIYLKNIF 304 (391)
Q Consensus 246 y------------e~~~fa~~g~~~~~n~~yw~-~~~~lG~G~gA~s~~~~~~--~~~r~~n~~~~~~y~~~~~ 304 (391)
| |+++||+||++|+||..||. ..+|||||+||+|++...+ ...|+.|.+++.+|++.++
T Consensus 400 Yylyrqk~~~~n~E~~~ya~~g~~~~~N~~~w~~~~~~iglG~gA~s~~~~~~~~~~~r~~N~k~~~~Y~~~i~ 473 (488)
T PRK08207 400 YYLYRQKNMLGNLENVGYAKPGKESIYNIQIMEEKQTIIGLGAGAVSKFVFPDENRIERFANPKDPKEYIERID 473 (488)
T ss_pred hhhhhccccccccceecccCCCcchhhHHHHHccCCeEEEEcCCcccCCCCCCCCcceEEecCCCHHHHHHHHH
Confidence 9 99999999999999999996 7899999999999985322 3568999999999999874
No 21
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=100.00 E-value=9.8e-33 Score=262.14 Aligned_cols=209 Identities=15% Similarity=0.188 Sum_probs=165.3
Q ss_pred eeEeccCC-CCCC--------CCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHH
Q psy2383 18 SLYIHFPW-CIKK--------CPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLD 88 (391)
Q Consensus 18 ~lYihiPf-C~~~--------C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~ 88 (391)
=+=|+.+| ||++ |+||+.......... ..+..+.+.++|+.....+......++|||||||++++.+.+.
T Consensus 19 k~~~~~g~~cpnrdg~~~~~gC~FC~~~~~~~~~~~-~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~ 97 (302)
T TIGR01212 19 KITLHGGFSCPNRDGTKGRGGCTFCNDASRPIFADE-YTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLK 97 (302)
T ss_pred EeecCCCCCCCCCCCCCCCCCcccCCCCCCcccccc-ccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHH
Confidence 34578889 9995 999987654321100 0011223334444332323333456799999999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHH---CCC-CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSI---IGI-NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 164 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~---~Gv-~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~ 164 (391)
++++.+.+. ....+++++++|+.++++.++.|++ +|+ ++|++|+||+++++|+.++|+|+.+++.++++.+++
T Consensus 98 ~l~~~i~~~---~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~ 174 (302)
T TIGR01212 98 EMYEQALSY---DDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARK 174 (302)
T ss_pred HHHHHHhCC---CCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHH
Confidence 999999873 4457999999999999987777765 599 689999999999999999999999999999999999
Q ss_pred h-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---CCCCCCHHHHHHHH
Q psy2383 165 Y-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQ 231 (391)
Q Consensus 165 ~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~~~~p~~~~~~~~~ 231 (391)
+ +. +++++|+|+||||.+++.++++.+.+++|++|++|+|++.|||++++.. ...+++.++..+..
T Consensus 175 ~gi~-v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~ 244 (302)
T TIGR01212 175 RGIK-VCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLA 244 (302)
T ss_pred cCCE-EEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9 86 9999999999999999999999999999999999999999999997752 23456665544433
No 22
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.98 E-value=3.2e-31 Score=265.71 Aligned_cols=146 Identities=18% Similarity=0.309 Sum_probs=134.9
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCC----------------------CCCcEEEEeeCCCCCCHHHHHHhHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLF----------------------KKNISITLEANPSTFEIEKFHSYSI 125 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~----------------------~~~~eit~e~~p~~l~~e~l~~l~~ 125 (391)
+++.+ |+||||+.++.+..+.++..+.+.++- ...+.+|+|++|+.++++.|+.|++
T Consensus 136 kvE~i-~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~ 214 (522)
T TIGR01211 136 KVELI-IMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLK 214 (522)
T ss_pred eEEEE-EECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 34444 888999999999999999999887632 1247899999999999999999999
Q ss_pred CCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHh---cCCCeEE
Q psy2383 126 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ---YSPPHLS 201 (391)
Q Consensus 126 ~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~---l~~~~is 201 (391)
+|++||++||||+|+++|+.+||+|+.+++.++++.++++ |. +++|||+||||||.+++.++++.+.+ ++|++|+
T Consensus 215 ~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~-v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ik 293 (522)
T TIGR01211 215 LGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLK-VVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLK 293 (522)
T ss_pred cCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe-EEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEE
Confidence 9999999999999999999999999999999999999999 85 99999999999999999999999985 9999999
Q ss_pred EecccccCCCcccC
Q psy2383 202 LYSLTIEPNTYFFK 215 (391)
Q Consensus 202 ~y~l~~~pgT~l~~ 215 (391)
+|++.+.|||++++
T Consensus 294 iypl~V~~gT~L~~ 307 (522)
T TIGR01211 294 IYPTLVTRGTELYE 307 (522)
T ss_pred EecceeeCCCHHHH
Confidence 99999999999875
No 23
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.96 E-value=6.4e-29 Score=248.10 Aligned_cols=194 Identities=15% Similarity=0.212 Sum_probs=158.2
Q ss_pred CCceeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEE--------eCCCCCCCCHH
Q psy2383 15 PPLSLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFI--------GGGTPSLISDT 85 (391)
Q Consensus 15 ~~~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~--------gGGtps~l~~~ 85 (391)
++.++|||| ++|+++|+||.++...++ .+.++++.+++||+...+. +++.|+| ||++|+..
T Consensus 136 ~~~~~~l~isrGC~~~CsfC~~p~~~g~---~~sr~~e~Iv~Ei~~l~~~----G~keI~l~g~~~~~yG~d~~~~~--- 205 (440)
T PRK14334 136 GKLSAHLTIMRGCNHHCTYCIVPTTRGP---EVSRHPDLILRELELLKAA----GVQEVTLLGQNVNSYGVDQPGFP--- 205 (440)
T ss_pred CCeEEEEEeccCCCCCCcCCCcchhcCC---CccCCHHHHHHHHHHHHHC----CCeEEEEEeccccccccCCCCcC---
Confidence 457899999 999999999998775432 3468999999999976432 3555555 44555433
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 162 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~ 162 (391)
.+.+|++.+.+. ++ ..+.+.+ +|..++++.++.|++. |++++++|+||+|+++|+.|+|+++.+++.++++.+
T Consensus 206 ~~~~Ll~~l~~~-~i---~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~l 281 (440)
T PRK14334 206 SFAELLRLVGAS-GI---PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEI 281 (440)
T ss_pred CHHHHHHHHHhc-CC---cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 356677766543 32 2355544 8999999999999995 599999999999999999999999999999999999
Q ss_pred Hhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCC
Q psy2383 163 KQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 223 (391)
Q Consensus 163 ~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~ 223 (391)
+++ .. .+++|||+|+||||.+++.++++++.+++++++.+|.+++.|||++++... ..|.
T Consensus 282 r~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~~~~-~v~~ 343 (440)
T PRK14334 282 REALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQ-DLPR 343 (440)
T ss_pred HHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHhccC-CCCH
Confidence 999 43 478999999999999999999999999999999999999999999987654 3444
No 24
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.96 E-value=5.7e-30 Score=259.39 Aligned_cols=218 Identities=13% Similarity=0.204 Sum_probs=184.1
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcE
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 105 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~e 105 (391)
||++|+||..+... ...+.+.++.+++||+...+ ..++..++|.+++|+. +.+.+.++++.+.+.-+ ....
T Consensus 203 Cp~~C~FC~~~~~~---~~~R~rs~e~Vv~Ei~~l~~---~~gv~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~--l~i~ 273 (497)
T TIGR02026 203 CPFTCNFCSQWKFW---RRYRHRDPKKFVDEIEWLVR---THGVGFFILADEEPTI-NRKKFQEFCEEIIARNP--ISVT 273 (497)
T ss_pred CCCCCCCCCCCCCC---ceeecCCHHHHHHHHHHHHH---HcCCCEEEEEeccccc-CHHHHHHHHHHHHhcCC--CCeE
Confidence 99999999876643 23456788999999987643 2358889999999876 77788999998876522 2467
Q ss_pred EEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCH
Q psy2383 106 ITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTL 182 (391)
Q Consensus 106 it~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~ 182 (391)
|.++++++.+ +++.++.|+++|+++|++|+||+++++|+.++|+++.+++.++++.++++ +. +++++|+|+||||.
T Consensus 274 w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~-~~~~~I~G~P~et~ 352 (497)
T TIGR02026 274 WGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNIL-SEAQFITGFENETD 352 (497)
T ss_pred EEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCc-EEEEEEEECCCCCH
Confidence 8888888877 89999999999999999999999999999999999999999999999999 86 89999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccccccCC
Q psy2383 183 SELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 255 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~g 255 (391)
+++.++++++.+++|++++++.++|.|||++++......- ...+..|......+...|+.+||+++|.+.-
T Consensus 353 e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~--~~d~~~y~~~~~~~~~~~m~~~El~~~~~~~ 423 (497)
T TIGR02026 353 ETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVE--VQDYTKYNFVTPIMKPTHMPRWEILLGVKLN 423 (497)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhcc--cCchhhccccceEeeCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999875321110 1135677777888888999999999887643
No 25
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.9e-27 Score=237.99 Aligned_cols=197 Identities=18% Similarity=0.270 Sum_probs=160.8
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC------------CCCCCCC
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG------------GTPSLIS 83 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG------------Gtps~l~ 83 (391)
...||+|+. |+++|+||.++...++ .+.++++.+++||+...+ .+++.|.|.| ++|+...
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~---~rsr~~e~V~~Ei~~l~~----~g~kei~l~~~~~~~yg~d~~~~~p~~~~ 220 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGK---EQSRTPEAIRAEIEELAA----QGYKEITLLGQNIDAYGRDLPGTTPEGRH 220 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCC---CcccCHHHHHHHHHHHHH----CCCcEEEEEecccchhcCCCCCccccccc
Confidence 357999999 9999999998866542 346788999999987543 2355555543 4444333
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEE-eeCCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHH
Q psy2383 84 DTGLDYLLKNIKKLLLFKKNISITL-EANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIE 160 (391)
Q Consensus 84 ~~~l~~ll~~i~~~~~~~~~~eit~-e~~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~ 160 (391)
...+.++++.+.+..++ ..+++ ..+|+.++++.++.|+++ |++++++|+||+++++|+.|+|+++.+++.++++
T Consensus 221 ~~~l~~Ll~~i~~~~~~---~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~ 297 (448)
T PRK14333 221 QHTLTDLLYYIHDVEGI---ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIID 297 (448)
T ss_pred cccHHHHHHHHHhcCCC---eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHH
Confidence 45788888888764332 35666 458999999999999996 5899999999999999999999999999999999
Q ss_pred HHHhhc--ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 161 IAKQYF--NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 161 ~~~~~~--~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
.+++++ ..++.|+|+|+||||.+++.++++++.+++++++.++.++|.|||++++... ..|..
T Consensus 298 ~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~-~v~~~ 362 (448)
T PRK14333 298 KIREYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDN-QLSEE 362 (448)
T ss_pred HHHHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCC-CCCHH
Confidence 999983 3479999999999999999999999999999999999999999999987654 34443
No 26
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.1e-26 Score=233.53 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=161.0
Q ss_pred CceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC------HHHHH
Q psy2383 16 PLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS------DTGLD 88 (391)
Q Consensus 16 ~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~------~~~l~ 88 (391)
....||.|.. |+++|+||..+...++ .+.+.++.+++||+.+.. .+++.|.|.|.+.+... ...+.
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~---~Rsr~~e~Ii~Ei~~l~~----~G~keI~L~g~n~~~yg~d~~~~~~~l~ 283 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGK---ERSRRPEDIIQEVRHLAR----QGYKEITLLGQNVNAYGKDFEDIEYGLG 283 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCC---CeeCCHHHHHHHHHHHHH----CCCcEEEEEeeccccCcccccccchHHH
Confidence 4678999998 9999999998765432 356778999999987643 24677777776554321 23477
Q ss_pred HHHHHHHHhCCCCCCcEEEEe-eCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 89 YLLKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
+|++.|.+. ++ ..+.+. .+|..++++.++.|+++| ++++++|+||+|+++|+.|+|+++.+++.++++.++++
T Consensus 284 ~Ll~~I~~~-~i---~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~ 359 (509)
T PRK14327 284 DLMDEIRKI-DI---PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEA 359 (509)
T ss_pred HHHHHHHhC-CC---ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 888888763 32 234443 589999999999999999 78999999999999999999999999999999999998
Q ss_pred cc--cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 166 FN--NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 166 ~~--~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
++ .+++|+|+|+||||.+++.+|++++.+++++++.+|.+++.|||++++... ..|.+
T Consensus 360 ~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~-~vp~~ 419 (509)
T PRK14327 360 IPNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKD-NVPME 419 (509)
T ss_pred CCCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcC-CCCHH
Confidence 33 357799999999999999999999999999999999999999999987654 44543
No 27
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.95 E-value=2.2e-27 Score=239.73 Aligned_cols=179 Identities=15% Similarity=0.265 Sum_probs=155.5
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcE
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 105 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~e 105 (391)
||++|+||+++.... +...+.++++.+++||+...+.+ .+++.++|+|++++. +.+.+.++++.+++. +..
T Consensus 206 Cp~~C~FC~~~~~~~-g~~~r~rs~e~V~~Ei~~~~~~~--~~~~~i~f~Dd~f~~-~~~~~~~l~~~l~~~-----~i~ 276 (472)
T TIGR03471 206 CPSKCTFCLWPQTVG-GHRYRTRSAESVIEEVKYALENF--PEVREFFFDDDTFTD-DKPRAEEIARKLGPL-----GVT 276 (472)
T ss_pred CCCCCCCCCCCccCC-CCceEeCCHHHHHHHHHHHHHhc--CCCcEEEEeCCCCCC-CHHHHHHHHHHHhhc-----Cce
Confidence 999999998765432 23345678999999999765432 257899999999875 677888999888753 346
Q ss_pred EEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHH
Q psy2383 106 ITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSE 184 (391)
Q Consensus 106 it~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~ 184 (391)
|.++++. .++++.++.|+++|+++|++|+||+++++|+.++|+++.+++.++++.++++ +. +++++|+|+||||.++
T Consensus 277 ~~~~~~~-~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~-v~~~~IiGlPget~e~ 354 (472)
T TIGR03471 277 WSCNARA-NVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIK-VHGTFILGLPGETRET 354 (472)
T ss_pred EEEEecC-CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCe-EEEEEEEeCCCCCHHH
Confidence 7777765 4899999999999999999999999999999999999999999999999999 86 9999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEecccccCCCcccC
Q psy2383 185 LMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 215 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~ 215 (391)
+.++++++.++++++++++.++|.|||++++
T Consensus 355 ~~~ti~~~~~l~~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 355 IRKTIDFAKELNPHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred HHHHHHHHHhcCCCceeeeecccCCCcHHHH
Confidence 9999999999999999999999999998765
No 28
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.1e-26 Score=233.34 Aligned_cols=199 Identities=13% Similarity=0.198 Sum_probs=157.3
Q ss_pred eeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC----------CCHHH
Q psy2383 18 SLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL----------ISDTG 86 (391)
Q Consensus 18 ~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~----------l~~~~ 86 (391)
..||.|- -||++|+||..+...++ .+.+.++.+++||+..... +++.|.|.|.+.+. .....
T Consensus 169 ~a~i~isrGCp~~CsFC~ip~~~G~---~rsrs~e~Vv~Ei~~l~~~----g~~eI~l~~~~~~~y~~d~~~~~~~~~~~ 241 (467)
T PRK14329 169 SAFVSIMRGCDNMCTFCVVPFTRGR---ERSRDPESILNEVRDLFAK----GYKEVTLLGQNVDSYLWYGGGLKKDEAVN 241 (467)
T ss_pred EEEEEeccCcccCCCCCccccccCC---cccCCHHHHHHHHHHHHHC----CCeEEEEEeecccccccccCCcccccccc
Confidence 3456653 59999999998765432 4667899999999875432 35566555433211 11335
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy2383 87 LDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 163 (391)
Q Consensus 87 l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~ 163 (391)
+.+|++.+.+..+ ...+.+.+ +|..++++.++.|+++ |+++|++|+||+|+++|+.|+|+++.+++.++++.++
T Consensus 242 l~~Ll~~l~~~~~---~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir 318 (467)
T PRK14329 242 FAQLLEMVAEAVP---DMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIR 318 (467)
T ss_pred HHHHHHHHHhcCC---CcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 7888888776432 34566664 8999999999999997 8999999999999999999999999999999999999
Q ss_pred hhc--ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHH
Q psy2383 164 QYF--NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDE 226 (391)
Q Consensus 164 ~~~--~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~ 226 (391)
+++ ..+++|+|+|+||||.+++.++++++.+++++++.+|++++.|||++++..+...|.+..
T Consensus 319 ~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~ 383 (467)
T PRK14329 319 RIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVK 383 (467)
T ss_pred HhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHH
Confidence 972 248899999999999999999999999999999999999999999999643324555443
No 29
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.95 E-value=1.2e-26 Score=230.72 Aligned_cols=182 Identities=19% Similarity=0.255 Sum_probs=152.5
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC-----HHHHHHHHHHHHHhCCC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLDYLLKNIKKLLLF 100 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~-----~~~l~~ll~~i~~~~~~ 100 (391)
||++|+||..+...+ ..+.+.++.+++|++...+ .+++.|.|.|.+.+... ...+.+|++.+.+.-+
T Consensus 148 Cp~~CsfC~~~~~~g---~~r~r~~e~I~~Ei~~l~~----~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~- 219 (414)
T TIGR01579 148 CNFFCSYCIIPFARG---RSRSVPMEAILKQVKILVA----KGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPG- 219 (414)
T ss_pred cCCCCCCCceeeecC---CCccCCHHHHHHHHHHHHH----CCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCC-
Confidence 999999998765543 2466788999999987643 25788888776555443 2357788888775322
Q ss_pred CCCcEEEEe-eCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHh--h-cccceEeEe
Q psy2383 101 KKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ--Y-FNNFNLDLI 174 (391)
Q Consensus 101 ~~~~eit~e-~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~--~-~~~v~~dlI 174 (391)
...+.+. .+|+.++++.++.|+++| +..+++|+||+|+++|+.|+|+++.+++.++++.+++ . + .++.|+|
T Consensus 220 --~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi-~i~~~~I 296 (414)
T TIGR01579 220 --IKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDY-AFGTDII 296 (414)
T ss_pred --CcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eeeeeEE
Confidence 2344543 489999999999999887 8999999999999999999999999999999999999 5 5 4999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC
Q psy2383 175 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 218 (391)
Q Consensus 175 ~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~ 218 (391)
+|+||||.++++++++++.+++++++.+|+++|.|||++++...
T Consensus 297 vG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~ 340 (414)
T TIGR01579 297 VGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPASTMKD 340 (414)
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhhCCC
Confidence 99999999999999999999999999999999999999998653
No 30
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.1e-26 Score=231.93 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=160.0
Q ss_pred ceeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC----C-CHHHHHHH
Q psy2383 17 LSLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL----I-SDTGLDYL 90 (391)
Q Consensus 17 ~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~----l-~~~~l~~l 90 (391)
...||.| ..||++|+||..+...++ .+.+.++.+++||+...+ .+++.|.|.|.+.+. + +...+.++
T Consensus 140 ~~~~v~i~rGC~~~CsFC~ip~~~G~---~rsr~~e~Iv~Ei~~l~~----~g~kei~l~~~n~~~yg~~~~~~~~l~~L 212 (434)
T PRK14330 140 HHAWVTIIYGCNRFCTYCIVPYTRGR---EKSRPMEDILEEVEKLAK----QGYREVTFLGQNVDAYGKDLKDGSSLAKL 212 (434)
T ss_pred cEEEEEcccCCCCCCCCCceECcCCC---CccCCHHHHHHHHHHHHH----CCCcEEEEEEecccccccCCCCCccHHHH
Confidence 3456776 679999999998755532 356788999999987543 246777776644322 1 23457777
Q ss_pred HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc--
Q psy2383 91 LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF-- 166 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~-- 166 (391)
++.+.+.-++ ..-+....+|..++++.++.|+++| ++++++|+||+++++|+.|+|+++.+++.++++.+++++
T Consensus 213 l~~~~~~~~~--~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~ 290 (434)
T PRK14330 213 LEEASKIEGI--ERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPD 290 (434)
T ss_pred HHHHHhcCCc--eEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 7776554222 1123345689999999999999988 799999999999999999999999999999999999972
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHH
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAV 229 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~ 229 (391)
..+++|+|+|+||||.+++.++++++.+++++++.++.++|.|||++++..+...|++....+
T Consensus 291 i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r 353 (434)
T PRK14330 291 ASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRR 353 (434)
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHH
Confidence 348899999999999999999999999999999999999999999998853324555444333
No 31
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=4e-26 Score=227.70 Aligned_cols=198 Identities=12% Similarity=0.181 Sum_probs=159.1
Q ss_pred eeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHH--HHHHHHHHH
Q psy2383 18 SLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDT--GLDYLLKNI 94 (391)
Q Consensus 18 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~--~l~~ll~~i 94 (391)
..||.|-- ||++|+||..+...++ .+.+.++.+++|++...+ .+++.|.|.|.+.+....+ .+.+++..+
T Consensus 155 ~a~l~isrGC~~~CsFC~ip~~rG~---~rsr~~e~Iv~Ei~~l~~----~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l 227 (449)
T PRK14332 155 QAFVTIMRGCNNFCTFCVVPYTRGR---ERSRDPKSIVREIQDLQE----KGIRQVTLLGQNVNSYKEQSTDFAGLIQML 227 (449)
T ss_pred eEEEEecCCcCCCCCCCCcccccCC---cccCCHHHHHHHHHHHHH----CCCeEEEEecccCCcccCCcccHHHHHHHH
Confidence 45666553 9999999998755432 367789999999987643 3689999988877765432 356666555
Q ss_pred HHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcc--cc
Q psy2383 95 KKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN--NF 169 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~--~v 169 (391)
.+. .....+.+.. +|..++++.++.|+++| +..+++|+||+++++|+.|+|+++.+++.++++.++++++ .+
T Consensus 228 ~~~---~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i 304 (449)
T PRK14332 228 LDE---TTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGI 304 (449)
T ss_pred hcC---CCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 432 2223455544 89999999999999998 8999999999999999999999999999999999999833 35
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccC-CCCCCCCCHHH
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK-YPPLSMPSNDE 226 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~-~~~~~~p~~~~ 226 (391)
..|+|+|+||||.+++.++++++.+++++++++|.++++|||+.++ ... ..|++..
T Consensus 305 ~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~-~v~~~~~ 361 (449)
T PRK14332 305 TTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPD-NVPEEVK 361 (449)
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcC-CCCHHHH
Confidence 6899999999999999999999999999999999999999999984 333 4554443
No 32
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.95 E-value=1.5e-26 Score=231.00 Aligned_cols=198 Identities=17% Similarity=0.252 Sum_probs=161.7
Q ss_pred eeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCH----HHHHHHHH
Q psy2383 18 SLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD----TGLDYLLK 92 (391)
Q Consensus 18 ~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~----~~l~~ll~ 92 (391)
..||+| .-||++|+||..+...+ + .+.+.++.+++|++...+ .+++.|+|.|.+++.... ..+.++++
T Consensus 147 ~a~v~i~rGC~~~CsFC~~p~~~g--~-~rsr~~e~V~~Ei~~l~~----~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~ 219 (437)
T PRK14331 147 CAYVTVMRGCDKKCTYCVVPKTRG--K-ERSRRLGSILDEVQWLVD----DGVKEIHLIGQNVTAYGKDIGDVPFSELLY 219 (437)
T ss_pred EEEEEeccCcCCCCccCCcccCCC--C-cccCCHHHHHHHHHHHHH----CCCeEEEEeeeccccccCCCCCCCHHHHHH
Confidence 467775 46999999999876543 2 356789999999997643 358899999888765432 24677777
Q ss_pred HHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cc
Q psy2383 93 NIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FN 167 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~ 167 (391)
.+.+..++ ..+.+.+ +|..++++.++.|+++ |++++++|+||+++++|+.|+|+++.+++.++++.++++ .-
T Consensus 220 ~l~~~~g~---~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi 296 (437)
T PRK14331 220 AVAEIDGV---ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDI 296 (437)
T ss_pred HHhcCCCc---cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 77654332 2344443 8999999999999998 599999999999999999999999999999999999997 22
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHH
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDE 226 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~ 226 (391)
.+++|+|+|+||||.+++.+|++++.+++++++.+|+++|.|||++++... ..|+...
T Consensus 297 ~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~-~~~~~~~ 354 (437)
T PRK14331 297 TFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAYMEG-QEPDEVK 354 (437)
T ss_pred EEecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhhCCC-CCCHHHH
Confidence 478999999999999999999999999999999999999999999988754 4454433
No 33
>PRK07094 biotin synthase; Provisional
Probab=99.94 E-value=4.8e-26 Score=219.38 Aligned_cols=203 Identities=17% Similarity=0.235 Sum_probs=167.7
Q ss_pred CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 103 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~ 103 (391)
.+|+.+|.||+++........ .....+.++++++... ..+++.++|+||++..++.+.+.++++.|++..+
T Consensus 47 ~gC~~~C~fC~~~~~~~~~~r-~~ls~eei~~~~~~~~----~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~---- 117 (323)
T PRK07094 47 NYCRNNCLYCGLRRDNKNIER-YRLSPEEILECAKKAY----ELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELD---- 117 (323)
T ss_pred CCCCCCCEeCCcccCCCCCcC-cCCCHHHHHHHHHHHH----HCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCC----
Confidence 679999999998765422111 1114566777776543 2368899999997655678889999999987532
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCH
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTL 182 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~ 182 (391)
+.++ .++..++++.++.|+++|++++++|+||+++++++.++++++.++..++++.++++ +. ++.++|+|+||||.
T Consensus 118 l~i~--~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ 194 (323)
T PRK07094 118 VAIT--LSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYE-VGSGFMVGLPGQTL 194 (323)
T ss_pred ceEE--EecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe-ecceEEEECCCCCH
Confidence 3444 34566899999999999999999999999999999999999999999999999999 86 99999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 183 SELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
+++.++++++.+++++.+.+++++|.||||+++... ++.++..++...++..+...
T Consensus 195 ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~---~~~~~~~~~~a~~R~~lp~~ 250 (323)
T PRK07094 195 EDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKG---GSLELTLKVLALLRLLLPDA 250 (323)
T ss_pred HHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCC---CCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999988653 66777788888887777653
No 34
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.94 E-value=3.1e-26 Score=218.43 Aligned_cols=189 Identities=15% Similarity=0.291 Sum_probs=151.6
Q ss_pred CCC----CCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCC---eeEEEEeCC--CCCCCCHHHHHHHHHHHHH
Q psy2383 26 CIK----KCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRK---IHTIFIGGG--TPSLISDTGLDYLLKNIKK 96 (391)
Q Consensus 26 C~~----~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~---~~~i~~gGG--tps~l~~~~l~~ll~~i~~ 96 (391)
|++ .|+||++.....+ .+..+.+.+||+...+.++... +..+|.+|. .|+.++++.+.+|++.+++
T Consensus 25 C~~~~~g~C~FC~~~~~~~r-----~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~ 99 (313)
T TIGR01210 25 CYWAREGGCYMCGYLADSSP-----EVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQ 99 (313)
T ss_pred CCCCCCCcCccCCCCCCCCC-----CCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHh
Confidence 999 5999986654321 1244556666665443332111 234565554 6788899999999999987
Q ss_pred hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCC-EEEEecCCCCHHHHH-HhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 97 LLLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLN-ILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 97 ~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~-risiGvqS~~~~~l~-~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
.. ...+|++|++|+.++++.|+.|+++|++ +|++|+||+++++|+ .+||+++.+++.++++.++++ +. +++++
T Consensus 100 ~~---~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~-v~~~~ 175 (313)
T TIGR01210 100 RD---NLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAG-VKAYL 175 (313)
T ss_pred cC---CcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc-EEEEE
Confidence 42 2358999999999999999999999998 899999999999995 899999999999999999999 86 99999
Q ss_pred ecCCCC----CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCC---CCCCCCCH
Q psy2383 174 IYALPN----QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSN 224 (391)
Q Consensus 174 I~GlPg----qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~---~~~~~p~~ 224 (391)
|+|+|+ ||.+++.++++.+.+++ ++|++|++++.|||++++. ..+.+|..
T Consensus 176 i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~l 232 (313)
T TIGR01210 176 LFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRGLYRPPWL 232 (313)
T ss_pred EecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcCCCCCCCH
Confidence 999995 67788999999999999 9999999999999987543 33445543
No 35
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=3.9e-26 Score=227.77 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=155.7
Q ss_pred eeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCH----HHHHHHHH
Q psy2383 18 SLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD----TGLDYLLK 92 (391)
Q Consensus 18 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~----~~l~~ll~ 92 (391)
..||-|-= |+++|+||..+...++ .+.+.++.+++|++.... .+++.|.|.|.+.+.... ..+.+|++
T Consensus 150 ~a~l~isrGC~~~CsFC~ip~~rG~---~rsr~~e~Vv~Ei~~l~~----~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~ 222 (445)
T PRK14340 150 SAFVPVMRGCNNMCAFCVVPFTRGR---ERSHPFASVLDEVRALAE----AGYREITLLGQNVNSYSDPEAGADFAGLLD 222 (445)
T ss_pred EEEEEeccCCCCCCCCCCcccccCC---CcCCCHHHHHHHHHHHHH----CCCeEEEEeecccchhhccCCCchHHHHHH
Confidence 34555543 9999999998755432 456788999999987643 357888887776654321 24677887
Q ss_pred HHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cc
Q psy2383 93 NIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FN 167 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~ 167 (391)
.+.+. .+...+.+.+ +|..++++.++.|+++ |++++.+|+||+++++|+.|+|+++.+++.++++.+++. .-
T Consensus 223 ~l~~~---~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi 299 (445)
T PRK14340 223 AVSRA---APEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGV 299 (445)
T ss_pred HHhhc---CCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 77653 2345667764 8999999999999996 799999999999999999999999999999999999998 33
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccC
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 215 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~ 215 (391)
.++.|+|+|+||||.+++.++++++.+++++++.+|.+++.|||++++
T Consensus 300 ~i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~ 347 (445)
T PRK14340 300 TLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAAR 347 (445)
T ss_pred EEeccEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhh
Confidence 478999999999999999999999999999999999999999999985
No 36
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=7.2e-26 Score=226.80 Aligned_cols=191 Identities=14% Similarity=0.209 Sum_probs=154.5
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCH-------HHHHHHHHHHHHhC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD-------TGLDYLLKNIKKLL 98 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~-------~~l~~ll~~i~~~~ 98 (391)
||++|+||..+...++ .+.++++.+++|++...+ .+++.|.|.|.+.+.... ..+.+++..|.+..
T Consensus 162 C~~~CsfC~~p~~rG~---~rsr~~e~Vv~Ei~~l~~----~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~ 234 (455)
T PRK14335 162 CNNFCSYCIVPYVRGR---EISRDLDAILQEIDVLSE----KGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRA 234 (455)
T ss_pred CCCCCCCCCcccCCCC---CccCCHHHHHHHHHHHHH----CCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhh
Confidence 9999999998765532 346789999999987643 357888888877654321 14677777775332
Q ss_pred CCCC-CcEEEE-eeCCCCCCHHHHHHhHH--CCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEe
Q psy2383 99 LFKK-NISITL-EANPSTFEIEKFHSYSI--IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLD 172 (391)
Q Consensus 99 ~~~~-~~eit~-e~~p~~l~~e~l~~l~~--~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~d 172 (391)
.... ...+.+ .++|..++++.++.|++ .|++++++|+||+++++|+.|+|+++.+++.++++.++++ .-.++.|
T Consensus 235 ~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d 314 (455)
T PRK14335 235 EVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTD 314 (455)
T ss_pred cccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2111 223443 46999999999999998 4899999999999999999999999999999999999997 3348899
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
+|+|+||||.+++.+|++++.+++++++.+|.++|.|||++++... ..|..
T Consensus 315 ~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~-~v~~~ 365 (455)
T PRK14335 315 ILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPD-RIPDE 365 (455)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCC-CCCHH
Confidence 9999999999999999999999999999999999999999998654 45544
No 37
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=8.8e-26 Score=225.62 Aligned_cols=212 Identities=13% Similarity=0.195 Sum_probs=166.5
Q ss_pred CceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC-----HHHHHH
Q psy2383 16 PLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLDY 89 (391)
Q Consensus 16 ~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~-----~~~l~~ 89 (391)
....||.|.- ||++|+||..+...++ .+.+.++.+++|++...+ .+++.|.|.|.+.+... ...+.+
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~---~Rsr~~e~Iv~Ei~~l~~----~G~~ei~l~~~~~~~yg~d~~~~~~l~~ 218 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGR---ERSRKPEDIIAEIKELVS----EGYKEVTLLGQNVNSYGKDLEEKIDFAD 218 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCC---cccCCHHHHHHHHHHHHH----CCCcEEEEeccccCcCCcCCCCCcCHHH
Confidence 3456888887 9999999998765532 255678899999987543 35788888887655421 124777
Q ss_pred HHHHHHHhCCCCCCcEEEEe-eCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q psy2383 90 LLKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF 166 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~ 166 (391)
|++.+.+.. ....+.+. .+|+.++++.++.|+++| ++++++|+||+++++|+.|+|+++.+++.++++.+++++
T Consensus 219 Ll~~l~~~~---~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~ 295 (439)
T PRK14328 219 LLRRVNEID---GLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNI 295 (439)
T ss_pred HHHHHHhcC---CCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 887776532 22345543 589999999999999986 999999999999999999999999999999999999883
Q ss_pred c--cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 167 N--NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 167 ~--~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
+ .+++|+|+|+||||.+++.++++++.+++++++.++.++|.|||++++... ..| .+...+.+....+...
T Consensus 296 ~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~-~v~-~~~~~~r~~~l~~~~~ 368 (439)
T PRK14328 296 PDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAKMED-QVP-EDVKHERFNRLVELQN 368 (439)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhhCCC-CCC-HHHHHHHHHHHHHHHH
Confidence 3 368899999999999999999999999999999999999999999987654 333 4444555554444443
No 38
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=1e-25 Score=225.76 Aligned_cols=208 Identities=15% Similarity=0.210 Sum_probs=162.9
Q ss_pred eeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC-------HHHHHH
Q psy2383 18 SLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-------DTGLDY 89 (391)
Q Consensus 18 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~-------~~~l~~ 89 (391)
..|+.|-= ||++|+||..+...++ .+.+.++.+++|++...+ .+++.|+|.|.+.+... ...+.+
T Consensus 148 ~~~i~isrGCp~~CsFC~~p~~~G~---~~sr~~e~Iv~Ei~~l~~----~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~ 220 (444)
T PRK14325 148 SAFVSIMEGCDKYCTFCVVPYTRGE---EVSRPVDDVLAEVAQLAE----QGVREITLLGQNVNAYRGEGPDGEIADFAE 220 (444)
T ss_pred eEEEEhhhCCCCCCCccccCcccCC---cccCCHHHHHHHHHHHHH----CCCcEEEEEeeccccccCCCCCCCcchHHH
Confidence 34555443 9999999998765432 235789999999987643 25778888877655531 236788
Q ss_pred HHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-
Q psy2383 90 LLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~- 165 (391)
|++.+.+.-+ ...+.+.+ +|..++++.++.|+++| ++++++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 221 Ll~~l~~~~~---~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~ 297 (444)
T PRK14325 221 LLRLVAAIDG---IERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAAR 297 (444)
T ss_pred HHHHHHhcCC---ccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHC
Confidence 8888765322 22456654 79999999999999985 99999999999999999999999999999999999997
Q ss_pred c-ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 166 F-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 166 ~-~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
. -.+++|+|+|+||||.+++.++++++.+++++++.+|.++|.|||++++... ..| .+...+......+.
T Consensus 298 ~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~-~v~-~~~~~~r~~~l~~~ 368 (444)
T PRK14325 298 PDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPD-DVP-EEVKKERLQRLQAL 368 (444)
T ss_pred CCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCC-CCC-HHHHHHHHHHHHHH
Confidence 2 2489999999999999999999999999999999999999999999998753 333 34444444333333
No 39
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.94 E-value=1.2e-25 Score=224.61 Aligned_cols=199 Identities=14% Similarity=0.204 Sum_probs=160.5
Q ss_pred ceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCC-C------HHHHH
Q psy2383 17 LSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-S------DTGLD 88 (391)
Q Consensus 17 ~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l-~------~~~l~ 88 (391)
...||.|- -|+++|+||..+...++ .+.+.++.+++|++...+ .+++.|.|.|.+.+.. . ...+.
T Consensus 145 ~~~~v~i~rGC~~~CsfC~~~~~~G~---~rsr~~e~I~~Ei~~l~~----~g~~ei~l~~~~~~~y~g~d~~~~~~~l~ 217 (438)
T TIGR01574 145 YKSFINIMIGCNKFCTYCIVPYTRGD---EISRPFDDILQEVQKLAE----KGVREITLLGQNVNAYRGKDFEGKTMDFS 217 (438)
T ss_pred eeEEeehhcCCCCCCCCCCeeeecCC---CcccCHHHHHHHHHHHHH----cCCeEEEEEecccCCccCCCCCCCcccHH
Confidence 45788884 69999999998765432 356789999999987643 2577888877665544 1 12467
Q ss_pred HHHHHHHHhCCCCCCcEEEEe-eCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 89 YLLKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
++++.+.+..++ ..+.+. ++|..++++.++.|+++| ++++++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 218 ~Ll~~l~~~~~~---~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~ 294 (438)
T TIGR01574 218 DLLRELSTIDGI---ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAA 294 (438)
T ss_pred HHHHHHHhcCCc---eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 777777653222 234443 489999999999999999 99999999999999999999999999999999999987
Q ss_pred cc--cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHH
Q psy2383 166 FN--NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDE 226 (391)
Q Consensus 166 ~~--~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~ 226 (391)
++ .+++|+|+|+||||.+++.++++++.+++++++.++.+++.|||++++... ..|+...
T Consensus 295 ~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~-~v~~~~~ 356 (438)
T TIGR01574 295 CPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPD-QIPEEIK 356 (438)
T ss_pred CCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCC-CCCHHHH
Confidence 22 367899999999999999999999999999999999999999999998654 3444433
No 40
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=2e-25 Score=223.25 Aligned_cols=198 Identities=18% Similarity=0.225 Sum_probs=159.2
Q ss_pred ceeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC------HHHHHH
Q psy2383 17 LSLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS------DTGLDY 89 (391)
Q Consensus 17 ~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~------~~~l~~ 89 (391)
...||+| .-||++|+||..+...++ .+.+.++.+++|++...+ .+++.|+|.|.+.+... ...+..
T Consensus 148 ~~a~v~i~rGC~~~CsFC~ip~~rG~---~rsr~~e~Iv~Ei~~l~~----~G~~eI~l~~~~~~~yg~d~~~~~~~l~~ 220 (446)
T PRK14337 148 ASAFVNIMQGCDNFCAYCIVPYTRGR---QKSRSSAAVLDECRALVD----RGAREITLLGQNVNSYGQDKHGDGTSFAQ 220 (446)
T ss_pred cEEEEEeccCCCCCCcCCCcccCCCC---CeeCCHHHHHHHHHHHHH----CCCeEEEEEecCccccccCCCCCCccHHH
Confidence 4578888 569999999987654432 356778999999997644 25788888876654321 135677
Q ss_pred HHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc-
Q psy2383 90 LLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF- 166 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~- 166 (391)
|++.|.+..++. .+.++. .+|..++++.++.|+++ |+++|++|+||+++++|+.|+|+++.+++.++++.+++.+
T Consensus 221 Ll~~l~~~~g~~-~ir~~~-~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~ 298 (446)
T PRK14337 221 LLHKVAALPGLE-RLRFTT-PHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARP 298 (446)
T ss_pred HHHHHHhcCCCc-EEEEcc-CCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 777776542221 233332 68999999999999985 5999999999999999999999999999999999999983
Q ss_pred -ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 167 -NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 167 -~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
-.+++|+|+|+||||.+++.++++++.+++++++.+|.+++.|||+.++.+. ..|+.
T Consensus 299 ~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~-~v~~~ 356 (446)
T PRK14337 299 DIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPG-KVPEE 356 (446)
T ss_pred CCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCccccCCC-CCCHH
Confidence 2378999999999999999999999999999999999999999999988654 44543
No 41
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=3.4e-25 Score=222.17 Aligned_cols=194 Identities=13% Similarity=0.207 Sum_probs=159.7
Q ss_pred CCceeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCC-----CHHHHH
Q psy2383 15 PPLSLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-----SDTGLD 88 (391)
Q Consensus 15 ~~~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l-----~~~~l~ 88 (391)
++...|+.| .-|+++|+||..+...++ .+.+.++.+++|++...+ .+++.|.|.|.+.+.. +...+.
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G~---~rsr~~e~Il~ei~~l~~----~G~keI~l~g~~~~~yG~d~~~~~~l~ 225 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRGR---ERSRPLAEIVEEVRRIAA----RGAKEITLLGQIVDSYGHDLPGRPDLA 225 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCCC---CccCCHHHHHHHHHHHHH----CCCeEEEEeeecCCCcccccCChHHHH
Confidence 345788888 679999999987765432 356678999999987643 2578888888554432 234688
Q ss_pred HHHHHHHHhCCCCCCcEEEE-eeCCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 89 YLLKNIKKLLLFKKNISITL-EANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~-e~~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
+|++.+.+..++ ..+.+ ..+|..++++.++.|+++ |++++++|+||+++++|+.|+|+++.+++.++++.+++.
T Consensus 226 ~Ll~~l~~~~gi---~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~ 302 (459)
T PRK14338 226 DLLEAVHEIPGL---ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREA 302 (459)
T ss_pred HHHHHHHhcCCc---ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHh
Confidence 888888764322 23444 358999999999999995 599999999999999999999999999999999999998
Q ss_pred c--ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC
Q psy2383 166 F--NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 218 (391)
Q Consensus 166 ~--~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~ 218 (391)
+ -.+++|+|+|+||||.+++.++++++.+++++.+.++.+++.|||++++...
T Consensus 303 ~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~ 357 (459)
T PRK14338 303 IPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMED 357 (459)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcC
Confidence 2 2477999999999999999999999999999999999999999999987643
No 42
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.94 E-value=3.8e-25 Score=219.30 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=160.0
Q ss_pred CceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC-----HHHHHH
Q psy2383 16 PLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLDY 89 (391)
Q Consensus 16 ~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~-----~~~l~~ 89 (391)
+...||.|-= |+++|+||..+...++ .+.+.++.+++|++...+ .+++.|+|.|.+.+... ...+.+
T Consensus 123 ~~~a~i~i~rGC~~~CsFC~ip~~rG~---~rsrs~e~Iv~Ei~~l~~----~G~~ei~l~~~~~~~yg~d~~~~~~l~~ 195 (418)
T PRK14336 123 PVSANVTIMQGCDNFCTYCVVPYRRGR---EKSRSIAEIGCEVAELVR----RGSREVVLLGQNVDSYGHDLPEKPCLAD 195 (418)
T ss_pred CeEEEEEeccCCCCCCccCCccccCCC---CccCCHHHHHHHHHHHHH----CCCeEEEEEecCccccccCCCCcccHHH
Confidence 3455655543 9999999988765432 367789999999997643 35788999888766432 235777
Q ss_pred HHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-
Q psy2383 90 LLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~- 165 (391)
+++.+.+. .....+.+.+ +|..++++.++.|+++ +++++++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 196 Ll~~l~~~---~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~ 272 (418)
T PRK14336 196 LLSALHDI---PGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM 272 (418)
T ss_pred HHHHHHhc---CCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhC
Confidence 88777653 2223566644 8999999999999995 499999999999999999999999999999999999998
Q ss_pred -cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 166 -FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 166 -~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
.-.++.|+|+|+||||.+++.++++++.+++++.+.++.+++.|||++++..+...|..
T Consensus 273 pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~ 332 (418)
T PRK14336 273 PDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVI 332 (418)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHH
Confidence 23477899999999999999999999999999999999999999999986333245543
No 43
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.94 E-value=1.8e-25 Score=223.19 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=155.3
Q ss_pred eEeccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCC-----CHHHHHHH
Q psy2383 19 LYIHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-----SDTGLDYL 90 (391)
Q Consensus 19 lYihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l-----~~~~l~~l 90 (391)
.|..|+. ||++|+||..+...+ ..+.+.++.+++||+...+ .+++.|.|.|.+.+.. ....+.+|
T Consensus 139 ~~~~i~~srGC~~~CsfC~~~~~~g---~~r~r~~e~Vv~Ei~~l~~----~g~~ei~l~~~~~~~yg~d~~~~~~l~~L 211 (429)
T TIGR00089 139 TRAFLKIQEGCDKFCTYCIVPYARG---RERSRPPEDILEEVKELVS----KGVKEIVLLGQNVGAYGKDLKGETNLADL 211 (429)
T ss_pred eEEEEEHHhCcCCCCCcCceecccC---CCCCCCHHHHHHHHHHHHH----CCCceEEEEeeccccccCCCCCCcCHHHH
Confidence 3444544 999999999876553 2456778999999997643 2477788877554432 12357788
Q ss_pred HHHHHHhCCCCCCcEEEEe-eCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc-
Q psy2383 91 LKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF- 166 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~- 166 (391)
++.+.+.-+ ...+.+. .+|..++++.++.|+++| ++++++|+||+|+++|+.|+|+++.+++.++++.+++++
T Consensus 212 l~~l~~~~g---~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~ 288 (429)
T TIGR00089 212 LRELSKIDG---IERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIP 288 (429)
T ss_pred HHHHhcCCC---CCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 888765322 2345554 489899999999999995 999999999999999999999999999999999999984
Q ss_pred -ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC
Q psy2383 167 -NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 218 (391)
Q Consensus 167 -~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~ 218 (391)
-.+..|+|+|+||||.+++.++++++.+++++++.+|+++|.|||++++...
T Consensus 289 ~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~~~~ 341 (429)
T TIGR00089 289 DAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKD 341 (429)
T ss_pred CCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhhCCC
Confidence 3588999999999999999999999999999999999999999999998664
No 44
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=7.7e-25 Score=217.27 Aligned_cols=197 Identities=13% Similarity=0.186 Sum_probs=157.2
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC--------HHHH
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS--------DTGL 87 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~--------~~~l 87 (391)
...||.|-= |+++|+||..+...++ .+.+.++.+++|++.... .+++.|+|.|.+.+... ...+
T Consensus 127 ~~a~i~isrGC~~~CsFC~ip~~rG~---~~sr~~e~I~~Ei~~l~~----~G~keI~l~~~~~~~yg~d~~~~~~~~~l 199 (420)
T PRK14339 127 YKSLVNISIGCDKKCTYCIVPHTRGK---EISIPMDLILKEAEKAVN----NGAKEIFLLGQNVNNYGKRFSSEHEKVDF 199 (420)
T ss_pred eEEEEEecCCCCCCCCcCCcccccCC---CCCCCHHHHHHHHHHHHH----CCCcEEEEeeeccccccCCCcCCcccccH
Confidence 345666654 9999999998866543 234678999999987643 25788888876644321 1247
Q ss_pred HHHHHHHHHhCCCCCCcEEEEe-eCCCCCCHHHHHHhHHC--CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy2383 88 DYLLKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSII--GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 164 (391)
Q Consensus 88 ~~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~--Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~ 164 (391)
.++++.+.+. .....+.+. .+|..++++.++.|+++ |+..+++|+||+++++|+.|+|+++.+++.++++.+++
T Consensus 200 ~~Ll~~l~~~---~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~ 276 (420)
T PRK14339 200 SDLLDKLSEI---EGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRA 276 (420)
T ss_pred HHHHHHHhcC---CCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 7777777642 122245554 58989999999999998 69999999999999999999999999999999999999
Q ss_pred hc--ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 165 YF--NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 165 ~~--~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
++ -.+..|+|+|+||||.+++.++++++.+++++++.+|+++|.|||++++... ..|..
T Consensus 277 ~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~~~~-~v~~~ 337 (420)
T PRK14339 277 LVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAAWKN-QVDEE 337 (420)
T ss_pred HCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhhCCC-CCCHH
Confidence 82 2488999999999999999999999999999999999999999999988654 34443
No 45
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=7.4e-25 Score=221.33 Aligned_cols=195 Identities=14% Similarity=0.226 Sum_probs=157.3
Q ss_pred eEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC-----CCHHHHHHHHH
Q psy2383 19 LYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL-----ISDTGLDYLLK 92 (391)
Q Consensus 19 lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~-----l~~~~l~~ll~ 92 (391)
.||.|-= ||++|+||..+...++ .+.+.++.+++||+...+ .+++.|.|.|.+.+. .+...+.++++
T Consensus 159 a~v~isrGCp~~CsFC~ip~~rG~---~rsr~~e~Vv~Ei~~l~~----~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~ 231 (502)
T PRK14326 159 AWVSISVGCNNTCTFCIVPSLRGK---EKDRRPGDILAEVQALVD----EGVLEVTLLGQNVNAYGVSFGDRGAFSKLLR 231 (502)
T ss_pred EEEEEccCCCCCCccCceeccCCC---cccCCHHHHHHHHHHHHH----CCCceEEEEeecccccccCCCCHHHHHHHHH
Confidence 4555554 9999999998776542 356778999999987644 257888887766543 24456777877
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc--cc
Q psy2383 93 NIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF--NN 168 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~--~~ 168 (391)
.+.+.-++ ..+.|+. .+|..++++.++.|+++| +..+.+|+||+++++|+.|+|+++.+++.++++.+++++ -.
T Consensus 232 ~l~~i~~l-~~ir~~~-~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~ 309 (502)
T PRK14326 232 ACGEIDGL-ERVRFTS-PHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAA 309 (502)
T ss_pred HHHhcCCc-cEEEEec-cChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 77654222 1234432 489999999999999997 899999999999999999999999999999999999972 24
Q ss_pred ceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCC
Q psy2383 169 FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 223 (391)
Q Consensus 169 v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~ 223 (391)
++.|+|+|+||||.+++.++++++.+++++++.+|.+++.|||++++... ..|.
T Consensus 310 i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~-~v~~ 363 (502)
T PRK14326 310 ITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEG-QLPK 363 (502)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcC-CCCH
Confidence 89999999999999999999999999999999999999999999987653 3443
No 46
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.92 E-value=8.2e-24 Score=211.14 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=151.9
Q ss_pred eEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCC-CCCC----CCHHHHHHHHH
Q psy2383 19 LYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG-TPSL----ISDTGLDYLLK 92 (391)
Q Consensus 19 lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGG-tps~----l~~~~l~~ll~ 92 (391)
.||.+-- ||++|+||..+...++ .+.+.++.+++||+...+. +++.|.|.|. +.+. .+.+.+.+|++
T Consensus 137 ~~i~~srGC~~~CsfC~~~~~~G~---~r~r~~e~Vv~Ei~~l~~~----g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~ 209 (430)
T TIGR01125 137 AYLKVAEGCNRRCAFCIIPSIRGK---LRSRPIEEILKEAERLVDQ----GVKEIILIAQDTTAYGKDLYRESKLVDLLE 209 (430)
T ss_pred EEEEEccCCCCCCCcCCeecccCC---ceecCHHHHHHHHHHHHHC----CCcEEEEEeECCCccccCCCCcccHHHHHH
Confidence 3455443 9999999998765432 4567789999999876432 3566665542 2211 13457889999
Q ss_pred HHHHhCCCCCCcEEEE-eeCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-c-c
Q psy2383 93 NIKKLLLFKKNISITL-EANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F-N 167 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~-e~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~-~ 167 (391)
.|.+.-.+ ..+++ .++|..++++.++.|+++| +..+.+|+||+++++|+.|+|+++.+++.++++.++++ . .
T Consensus 210 ~i~~~~~i---~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i 286 (430)
T TIGR01125 210 ELGKVGGI---YWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDA 286 (430)
T ss_pred HHHhcCCc---cEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 88764111 12343 3689999999999999995 89999999999999999999999999999999999998 2 2
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 218 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~ 218 (391)
.++.|+|+|+||||.+++.++++++.+++++++.+++++|.|||++++.+.
T Consensus 287 ~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~~~~ 337 (430)
T TIGR01125 287 VLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFALPD 337 (430)
T ss_pred eEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCccccCCC
Confidence 477999999999999999999999999999999999999999999987653
No 47
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.1e-23 Score=205.54 Aligned_cols=195 Identities=17% Similarity=0.231 Sum_probs=157.4
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEE--------EeCCCCCCCCHHHH
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIF--------IGGGTPSLISDTGL 87 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~--------~gGGtps~l~~~~l 87 (391)
...||.|-- |.++|+||-.+...++ .+.+.++.+++|++.++.. +++.|. +|++++.- ...|
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~---~rSr~~e~Il~ev~~Lv~~----G~kEI~L~gqdv~aYG~D~~~~--~~~l 214 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGK---ERSRPPEDILKEVKRLVAQ----GVKEIVLTGQDVNAYGKDLGGG--KPNL 214 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCC---ccCCCHHHHHHHHHHHHHC----CCeEEEEEEEehhhccccCCCC--ccCH
Confidence 456666665 9999999998776643 4677899999999876532 344443 34444320 2357
Q ss_pred HHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy2383 88 DYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 164 (391)
Q Consensus 88 ~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~ 164 (391)
.+|++.|.+ +.....+.+-. +|..++++.++++++.. +..+.+.|||+||++|++|+|+|+.+++.+.++.+++
T Consensus 215 ~~Ll~~l~~---I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~ 291 (437)
T COG0621 215 ADLLRELSK---IPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRA 291 (437)
T ss_pred HHHHHHHhc---CCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHH
Confidence 888888877 33345677765 99999999999999963 6899999999999999999999999999999999998
Q ss_pred h--cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 165 Y--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 165 ~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
. -..++.|+|+|+||||.++|.+|++++.+.+++++.+|.+++.||||-+.... ..|..
T Consensus 292 ~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~-qvp~~ 352 (437)
T COG0621 292 ARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPD-QVPEE 352 (437)
T ss_pred hCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCC-CCCHH
Confidence 8 33589999999999999999999999999999999999999999999885443 45654
No 48
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.91 E-value=3.1e-23 Score=197.57 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=142.9
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCC----------------CCCCcEEEEeeCCCCCCHHHHHHhHHCCCCE
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL----------------FKKNISITLEANPSTFEIEKFHSYSIIGINR 130 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~----------------~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~r 130 (391)
.+++-+++| ||++.++.+.-+.++..+.+..+ .....-+|+|++|+.++++.++.|.+.|+++
T Consensus 133 ~KvEliimG-GTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~Tr 211 (515)
T COG1243 133 DKVELIIMG-GTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTR 211 (515)
T ss_pred ceEEEEEec-ccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcE
Confidence 356667665 59999999887777777766544 2334569999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcC---CCeEEEeccc
Q psy2383 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYS---PPHLSLYSLT 206 (391)
Q Consensus 131 isiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~---~~~is~y~l~ 206 (391)
|.+||||+++++|+..+|+||.+++.++.+.++++ |. ++..+|.||||.+.+.-.++.+.+.+.+ ||.+.+||..
T Consensus 212 VELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfK-v~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtL 290 (515)
T COG1243 212 VELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFK-VGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTL 290 (515)
T ss_pred EEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCcE-EEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeE
Confidence 99999999999999999999999999999999999 97 9999999999999999999999999887 9999999999
Q ss_pred ccCCCcccC---CCCCCCCCHHHHHHHHHHHH
Q psy2383 207 IEPNTYFFK---YPPLSMPSNDENAVMQDKIT 235 (391)
Q Consensus 207 ~~pgT~l~~---~~~~~~p~~~~~~~~~~~~~ 235 (391)
+.+||++++ ...+.+-+.++..++...+.
T Consensus 291 Vi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 291 VIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred EECCchHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999999764 34455667777777665554
No 49
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=188.60 Aligned_cols=218 Identities=14% Similarity=0.134 Sum_probs=169.5
Q ss_pred CCceeEeccCC-CCCC--------CCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHH
Q psy2383 15 PPLSLYIHFPW-CIKK--------CPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDT 85 (391)
Q Consensus 15 ~~~~lYihiPf-C~~~--------C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~ 85 (391)
+-.=+=||.+| ||+| |+||+-.............-.+.+.++++...+.....+ -.+||.-.|-|..+.+
T Consensus 22 Kv~Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k-yiaYFQ~~TNTyApve 100 (312)
T COG1242 22 KVFKVTLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGK-YIAYFQAYTNTYAPVE 100 (312)
T ss_pred eeEEEeccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCc-EEEEEeccccccCcHH
Confidence 33456789999 9986 999976555322111111222344444443333344434 6789999999999998
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC---CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGI---NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 162 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv---~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~ 162 (391)
.|++..+..-+. ...+-+++-++|+.+.++.++.|++..- -.|.+|+||.++++++.+||+|+.+.+.++++.+
T Consensus 101 vLre~ye~aL~~---~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~ 177 (312)
T COG1242 101 VLREMYEQALSE---AGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRL 177 (312)
T ss_pred HHHHHHHHHhCc---CCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHH
Confidence 888887765443 4557889999999999999999988753 2788999999999999999999999999999999
Q ss_pred Hhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCC---CCCCCCCHHHHHHHHHHHHHH
Q psy2383 163 KQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 163 ~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~---~~~~~p~~~~~~~~~~~~~~~ 237 (391)
++. +. |+..+|+||||||.+++.+|++.+..++++.|.+|+|.+.+||+|.+. ......+.++..+......+.
T Consensus 178 rkrgIk-vc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~ 255 (312)
T COG1242 178 RKRGIK-VCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEH 255 (312)
T ss_pred HHcCCe-EEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHh
Confidence 999 86 999999999999999999999999999999999999999999998764 334566777766654433333
No 50
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.91 E-value=9.2e-23 Score=183.46 Aligned_cols=197 Identities=29% Similarity=0.486 Sum_probs=168.6
Q ss_pred eEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCC-CeeEEEEeCCCCCCCCHHHHHHHHHHHHH
Q psy2383 19 LYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNR-KIHTIFIGGGTPSLISDTGLDYLLKNIKK 96 (391)
Q Consensus 19 lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~-~~~~i~~gGGtps~l~~~~l~~ll~~i~~ 96 (391)
+++++.- |+.+|.||......+ . .....++.+.++++......... .+..++|+||+|.+.+.+.+.++++.+++
T Consensus 3 ~~i~~t~~C~~~C~yC~~~~~~~--~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~ 79 (216)
T smart00729 3 ALYIITRGCPRRCTFCSFPSARG--K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIRE 79 (216)
T ss_pred cEEEecCchhccCCcCCcCcccc--c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 4566654 999999999876552 2 45567788888887763322222 37899999999999877779999999998
Q ss_pred hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec
Q psy2383 97 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 97 ~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~ 175 (391)
.........+++.+|+..++++.++.|+++|+++++++++|+++++.+.++++.+.+++.++++.++++ +..+.+.+|+
T Consensus 80 ~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~ 159 (216)
T smart00729 80 ILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV 159 (216)
T ss_pred hCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe
Confidence 765433578999999988999999999999999999999999999999999999999999999999999 4569999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP 218 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~ 218 (391)
|+|+++.+++.+.++++.++++++|.++++.+.|||++++...
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~~ 202 (216)
T smart00729 160 GLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYK 202 (216)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhcc
Confidence 9999999999999999999999999999999999999987763
No 51
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.90 E-value=7.5e-23 Score=203.33 Aligned_cols=191 Identities=17% Similarity=0.229 Sum_probs=149.2
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC---HHHHHHHHH
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS---DTGLDYLLK 92 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~---~~~l~~ll~ 92 (391)
...||-|-= |+++|+||..+...+ ..+.+.++.+++|++...+ .+++.|.|.|.+.+... ...+.++++
T Consensus 133 ~~~~i~isrGC~~~CsfC~ip~~~G---~~rsr~~e~Vl~Ei~~l~~----~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~ 205 (420)
T TIGR01578 133 LIEIIPINQGCLGNCSYCITKHARG---KLASYPPEKIVEKARQLVA----EGCKEIWITSQDTGAYGRDIGSRLPELLR 205 (420)
T ss_pred cEEEEEEccCCCCCCCCCccccCCC---CcccCCHHHHHHHHHHHHH----CCCeEEEEEeeccccccCCCCcCHHHHHH
Confidence 345555553 999999999765543 2456778999999987643 25777777654333221 124677777
Q ss_pred HHHHhCCCCCCcEEEEee-CCC---CCCHHHHHHhHHCC-CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcc
Q psy2383 93 NIKKLLLFKKNISITLEA-NPS---TFEIEKFHSYSIIG-INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN 167 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~-~p~---~l~~e~l~~l~~~G-v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~ 167 (391)
.+.+. .....+.+.. +|. .++++.++.++..+ +..+.+|+||+++++|+.|+|+++.+++.++++.+++.++
T Consensus 206 ~l~~i---~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~ 282 (420)
T TIGR01578 206 LITEI---PGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFP 282 (420)
T ss_pred HHHhC---CCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 77653 2223455543 775 45788998887655 6899999999999999999999999999999999998732
Q ss_pred --cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC
Q psy2383 168 --NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 168 --~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~ 217 (391)
.++.|+|+|+||||.+++.++++++.+++++++++++++|.|||++++..
T Consensus 283 ~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~~~ 334 (420)
T TIGR01578 283 DLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAKMK 334 (420)
T ss_pred CCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccCCC
Confidence 37899999999999999999999999999999999999999999998864
No 52
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.89 E-value=5e-22 Score=198.32 Aligned_cols=186 Identities=14% Similarity=0.174 Sum_probs=146.2
Q ss_pred eEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC-----------C-C--
Q psy2383 19 LYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL-----------I-S-- 83 (391)
Q Consensus 19 lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~-----------l-~-- 83 (391)
.||.|-- ||++|+||..+...++ .+.+.++.+++|++...+ .+++.|.|-|.+.+. + .
T Consensus 141 a~v~isrGCp~~CsFC~ip~~~G~---~rsr~~e~Vv~Ei~~l~~----~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~ 213 (440)
T PRK14862 141 AYLKISEGCNHRCTFCIIPSMRGD---LVSRPIGDVLREAERLVK----AGVKELLVISQDTSAYGVDVKYRTGFWNGRP 213 (440)
T ss_pred EEEEeccCCCCCCccCCcccccCC---ccccCHHHHHHHHHHHHH----CCCceEEEEecChhhhccccccccccccccc
Confidence 4444443 9999999997766532 467889999999987643 235555554322111 1 0
Q ss_pred -HHHHHHHHHHHHHhCCCCCCcEEEEe-eCCCCCCHHHHHHhHHCCCC--EEEEecCCCCHHHHHHhCCCCCHHHHHHHH
Q psy2383 84 -DTGLDYLLKNIKKLLLFKKNISITLE-ANPSTFEIEKFHSYSIIGIN--RLSIGIQSFNNKYLNILGRTHDSKQAKYAI 159 (391)
Q Consensus 84 -~~~l~~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~Gv~--risiGvqS~~~~~l~~l~R~~~~~~~~~~i 159 (391)
...+.+|++.+.+. ++ .+.+. ..|..++++.++.|++ |+. .+.||+||+++++|+.|+|+++.+++.+++
T Consensus 214 ~~~~~~~Ll~~l~~~-~~----~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i 287 (440)
T PRK14862 214 VKTRMTDLCEALGEL-GA----WVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERI 287 (440)
T ss_pred hhhHHHHHHHHHHhc-CC----EEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHH
Confidence 35788888888764 32 34444 4677788999999999 654 899999999999999999999999999999
Q ss_pred HHHHhh--cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC
Q psy2383 160 EIAKQY--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 160 ~~~~~~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~ 217 (391)
+.++++ --.++.|+|+|+||||.+++.++++++.+++++++.++.++|.|||+.++..
T Consensus 288 ~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~ 347 (440)
T PRK14862 288 KKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLP 347 (440)
T ss_pred HHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCC
Confidence 999997 2248899999999999999999999999999999999999999999986543
No 53
>PRK06256 biotin synthase; Validated
Probab=99.88 E-value=1.2e-21 Score=189.86 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=156.3
Q ss_pred eEeccCCCCCCCCCCCCCcccccCc-ccHHHHHHHHHHHHHhccCcccCCCeeEE--EEeCCCCCCCCHHHHHHHHHHHH
Q psy2383 19 LYIHFPWCIKKCPYCDFHSYEIKKN-ISEKKYLEALLIDVELSLPIILNRKIHTI--FIGGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 19 lYihiPfC~~~C~yC~~~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i--~~gGGtps~l~~~~l~~ll~~i~ 95 (391)
+++....|+.+|.||.++....... .......+.++++++...+. ++..+ ..||+.|+....+.+.++++.|+
T Consensus 61 ~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~ 136 (336)
T PRK06256 61 INAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE----GAGTFCIVASGRGPSGKEVDQVVEAVKAIK 136 (336)
T ss_pred eeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC----CCCEEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 4445678999999999877643211 11223567777777754321 23333 33455565432346667777776
Q ss_pred HhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe
Q psy2383 96 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI 174 (391)
Q Consensus 96 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI 174 (391)
+..+ .+ +.++...++++.++.|+++|++++.+|+|| ++++++.+++.++.++..++++.++++ +. +++++|
T Consensus 137 ~~~~----i~--~~~~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~-v~~~~I 208 (336)
T PRK06256 137 EETD----LE--ICACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIE-PCSGGI 208 (336)
T ss_pred hcCC----Cc--EEecCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCe-eccCeE
Confidence 6522 23 344566799999999999999999999999 999999999999999999999999999 86 999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 175 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 175 ~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
+|+ |||.+++.+++.++.+++++.+.+..+.|.||||++.... ++.++..++...++-.+.
T Consensus 209 ~Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~---~~~~e~l~~ia~~Rl~~p 269 (336)
T PRK06256 209 IGM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPE---LTPLECLKTIAIFRLINP 269 (336)
T ss_pred EeC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCC---CCHHHHHHHHHHHHHHCC
Confidence 998 9999999999999999999999999999999999987543 567777777765555553
No 54
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.86 E-value=2.4e-20 Score=177.60 Aligned_cols=202 Identities=13% Similarity=0.135 Sum_probs=152.5
Q ss_pred cCCCCCCCCCCCCCccccc-CcccHHHHHHHHHHHHHhccCcccCCCeeEE--EEeCCCCCCCC-HHHHHHHHHHHHHhC
Q psy2383 23 FPWCIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIILNRKIHTI--FIGGGTPSLIS-DTGLDYLLKNIKKLL 98 (391)
Q Consensus 23 iPfC~~~C~yC~~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i--~~gGGtps~l~-~~~l~~ll~~i~~~~ 98 (391)
--.|+.+|.||.++..... ......+.++.+++|++...+ .+++.+ ..+|+.|..-. .+.+..+.+.+++ .
T Consensus 36 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~-~ 110 (296)
T TIGR00433 36 SGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA----AGATRFCLVASGRGPKDREFMEYVEAMVQIVEE-M 110 (296)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH----CCCCEEEEEEecCCCChHHHHHHHHHHHHHHHh-C
Confidence 3569999999998765421 111122345677778775432 245554 45566654211 1233333333332 2
Q ss_pred CCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC
Q psy2383 99 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL 177 (391)
Q Consensus 99 ~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl 177 (391)
++.+ .++++.+++|.++.|+++|++++++|+| .++++++.++++++.++..++++.++++ +. +++.+|+|+
T Consensus 111 ----~i~~--~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~-v~~~~i~Gl 182 (296)
T TIGR00433 111 ----GLKT--CATLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLK-VCSGGIFGL 182 (296)
T ss_pred ----CCeE--EecCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCE-EEEeEEEeC
Confidence 2333 4566778999999999999999999999 8999999999999999999999999999 86 999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 178 PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
++|.+++.++++.+.+++++.+.++++.|.|||++++.. .++.++..+....++..+...
T Consensus 183 -~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~---~~s~~~~~~~ia~~r~~lp~~ 242 (296)
T TIGR00433 183 -GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNK---ELSADDALKTIALARIIMPKA 242 (296)
T ss_pred -CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCC---CCCHHHHHHHHHHHHHHCCcc
Confidence 999999999999999999999999999999999998743 477788888888777776543
No 55
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.86 E-value=1.6e-20 Score=183.34 Aligned_cols=203 Identities=12% Similarity=0.158 Sum_probs=158.9
Q ss_pred cCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEE-eCCCCCCCCHHHHHHHHHHHHHhCCCC
Q psy2383 23 FPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFI-GGGTPSLISDTGLDYLLKNIKKLLLFK 101 (391)
Q Consensus 23 iPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~-gGGtps~l~~~~l~~ll~~i~~~~~~~ 101 (391)
-.+|+.+|.||+|+..... . ......+.++++++... ..+++.+.+ ||.+|+..+.+.+.++++.|++.++
T Consensus 81 Tn~C~~~C~YC~f~~~~~~-~-~~~ls~eEI~~~a~~~~----~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p-- 152 (371)
T PRK09240 81 SNYCANDCTYCGFSMSNKI-K-RKTLDEEEIEREMAAIK----KLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFS-- 152 (371)
T ss_pred cccccCcCCcCCCCCCCCC-c-cccCCHHHHHHHHHHHH----hCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC--
Confidence 4689999999999765421 1 12234566666665432 346888865 5556776788999999999988753
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhh-cccceEeEecCC
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL 177 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl 177 (391)
++++++.| ++.+.++.|+++|++|+++++||++++.++.+ ++.|+.++..++++.++++ +.++++++|+|+
T Consensus 153 ---~i~i~~g~--lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl 227 (371)
T PRK09240 153 ---SVSIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGL 227 (371)
T ss_pred ---CceeccCC--CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecC
Confidence 46676655 79999999999999999999999999999998 4689999999999999999 877999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCC------eEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 178 PNQTLSELMLDLNYAIQYSPP------HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~~------~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
|++.++....+..+.++++. .|++-.|+|.+| ++.... ..++++..++...++-.|...+-
T Consensus 228 -ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~---~~~~~e~l~~ia~~Rl~lP~~~i 294 (371)
T PRK09240 228 -SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPAS---IVSDKQLVQLICAFRLFLPDVEI 294 (371)
T ss_pred -CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCC---CCCHHHHHHHHHHHHHHCccccc
Confidence 56899998888888888763 688889999999 875443 35677777777777666665443
No 56
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.84 E-value=6.9e-20 Score=178.74 Aligned_cols=210 Identities=14% Similarity=0.182 Sum_probs=154.3
Q ss_pred CceeEecc---CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEE-eCCCCCCCCHHHHHHHH
Q psy2383 16 PLSLYIHF---PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFI-GGGTPSLISDTGLDYLL 91 (391)
Q Consensus 16 ~~~lYihi---PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~-gGGtps~l~~~~l~~ll 91 (391)
.+.+|..| ..|+.+|.||+|+....... ..-..+.+.++++... ..+++.+.+ ||++|+..+.+.+.+++
T Consensus 70 ~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~--~~Ls~eEI~~~a~~~~----~~Gv~~i~lvgGe~p~~~~~e~l~eii 143 (366)
T TIGR02351 70 TISLFTPLYLSNYCSNKCVYCGFSMSNKIKR--KKLNEEEIEREIEAIK----KSGFKEILLVTGESEKAAGVEYIAEAI 143 (366)
T ss_pred EEEEEeeeeECccccCCCCcCCCCCCCCCcc--CcCCHHHHHHHHHHHH----hCCCCEEEEeeCCCCCCCCHHHHHHHH
Confidence 34556655 77999999999975431111 0012344555554332 234677754 56678888899999999
Q ss_pred HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC---CCCCHHHHHHHHHHHHhh-cc
Q psy2383 92 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAKQY-FN 167 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~---R~~~~~~~~~~i~~~~~~-~~ 167 (391)
+.|++.++ ++++++.| +|.+.++.|+++|++|+++|+||+|+++++.+. +.|+.++..++++.++++ +.
T Consensus 144 ~~Ik~~~p-----~i~Iei~~--lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 144 KLAREYFS-----SLAIEVQP--LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHhCC-----cccccccc--CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99998763 44566665 899999999999999999999999999999986 789999999999999999 87
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCC------CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSP------PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~------~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
++++++|+|+|+ +.++...+...+..+++ ..|++-.|.|.+| ++.... ..++.+..++....+-.+...
T Consensus 217 ~v~~g~i~Gl~e-~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~---~l~~~~~~~~i~~~R~~~P~~ 291 (366)
T TIGR02351 217 KIGIGALLGLDD-WRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKV---IVTDRELVQIICAYRLFDPFV 291 (366)
T ss_pred eeceeEEEeCch-hHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCC---cCCHHHHHHHHHHHHHhCccc
Confidence 799999999965 66666666666655654 6788888999999 775443 345566666666555555554
Q ss_pred CC
Q psy2383 242 YY 243 (391)
Q Consensus 242 Gy 243 (391)
+-
T Consensus 292 ~i 293 (366)
T TIGR02351 292 EI 293 (366)
T ss_pred cc
Confidence 43
No 57
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.84 E-value=1.3e-19 Score=175.81 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=161.4
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
.+|.+ |+.+|.||+++....... ......+.++++++.... .+++.|+|.||+...++.+.+.++++.|++.
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~-~y~ls~eeI~e~~~~~~~----~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~ 115 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDAD-AYLLSLEEIAERAAEAWK----AGATEVCIQGGIHPDLDGDFYLDILRAVKEE 115 (343)
T ss_pred eccccccccccCCccCCCccCCCCCC-cccCCHHHHHHHHHHHHH----CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 46665 999999999986543111 122456777777765432 3688999998876667888899999999987
Q ss_pred CCCCCCcEEEEee---------CCCCCCHHHHHHhHHCCCCEEE-EecCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhh-
Q psy2383 98 LLFKKNISITLEA---------NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQY- 165 (391)
Q Consensus 98 ~~~~~~~eit~e~---------~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l~R~~-~~~~~~~~i~~~~~~- 165 (391)
++ .+.+.+.+ +.+.++++.++.|+++|++++. .|.+++++++++.+.+++ +.++..++++.++++
T Consensus 116 ~~---~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~G 192 (343)
T TIGR03551 116 VP---GMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLG 192 (343)
T ss_pred CC---CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Confidence 42 35565532 4566789999999999999997 578999999999999875 999999999999999
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC----CCcccCCCC-CCCCCHHHHHHHHHHHHHHH
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP----NTYFFKYPP-LSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p----gT~l~~~~~-~~~p~~~~~~~~~~~~~~~L 238 (391)
++ ++..+|+|+| ||.++..+++..+.+++++...+..+.|.| ||+++.... ...++.++..++...++-.|
T Consensus 193 i~-v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~l 268 (343)
T TIGR03551 193 IP-TTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILL 268 (343)
T ss_pred Cc-ccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 87 8999999986 999999999999999999887777777755 999986421 12346777778776665554
No 58
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.83 E-value=3.7e-19 Score=158.00 Aligned_cols=179 Identities=19% Similarity=0.307 Sum_probs=147.3
Q ss_pred CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCc
Q psy2383 25 WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNI 104 (391)
Q Consensus 25 fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~ 104 (391)
-|+.+|.||........... .....+.+.+.+... ....+..++++||+|...+ .+.++++.+++.. ++.
T Consensus 6 ~C~~~C~fC~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~---~~~ 75 (204)
T cd01335 6 GCNLNCGFCSNPASKGRGPE-SPPEIEEILDIVLEA----KERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PGF 75 (204)
T ss_pred ccCCcCCCCCCCCCCCCCcc-ccccHHHHHHHHHHH----HhcCceEEEEeCCcCCccH--hHHHHHHHHHhhC---CCc
Confidence 49999999998766543211 111111222222211 2335788999999998854 6778888887764 457
Q ss_pred EEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCH
Q psy2383 105 SITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTL 182 (391)
Q Consensus 105 eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~-R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~ 182 (391)
.+++.+++..++++.++.|+++|+.+|.+|++|.++++++.++ +..+.+++.++++.+++. +. +.+.+|+|+|+++.
T Consensus 76 ~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~i~g~~~~~~ 154 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLG-LSTTLLVGLGDEDE 154 (204)
T ss_pred eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCC-ceEEEEEecCCChh
Confidence 8999999988899999999999999999999999999999998 788999999999999998 76 99999999999999
Q ss_pred HHHHHHHHHHHhcC-CCeEEEecccccCCCccc
Q psy2383 183 SELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFF 214 (391)
Q Consensus 183 e~~~~~l~~~~~l~-~~~is~y~l~~~pgT~l~ 214 (391)
+++.++++.+.++. ++.+.++++.+.|||+++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 99999999999998 999999999999999998
No 59
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.81 E-value=1.4e-18 Score=166.26 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=155.2
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
.||++ |+.+|.||++....... .......+.++++++... ..+++.|.|.||+...++.+.+.++++.|++.
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~-~~~~ls~eeI~~~~~~~~----~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDK-DAYVLSLEEILEKVKEAV----AKGATEVCIQGGLNPQLDIEYYEELFRAIKQE 81 (309)
T ss_pred eeecCccccccCCccCCCccCCCCC-CcccCCHHHHHHHHHHHH----HCCCCEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 45665 99999999998654321 112334567777776432 23578899888865557888899999999987
Q ss_pred CCCCCCcEEEEee---------CCCCCCHHHHHHhHHCCCCEEE-EecCCCCHHHHHHh-CCCCCHHHHHHHHHHHHhh-
Q psy2383 98 LLFKKNISITLEA---------NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNIL-GRTHDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 98 ~~~~~~~eit~e~---------~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l-~R~~~~~~~~~~i~~~~~~- 165 (391)
++ .+.+..-+ +....+++.++.|+++|++++. .|+|++++++++.+ .+..+.++..++++.++++
T Consensus 82 ~~---~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~G 158 (309)
T TIGR00423 82 FP---DVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLG 158 (309)
T ss_pred CC---CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Confidence 43 34444322 2233468999999999999995 79999999999988 5567999999999999999
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc----CCCc-ccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTY-FFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~----pgT~-l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
++ ++..+|+|+| ||.+++.+++..+.+++++...+..+.|. ++|| +.... ...++..+..++...++-.|.
T Consensus 159 i~-~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~-~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 159 IP-TTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEV-RKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred CC-ceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCC-CCCCCHHHHHHHHHHHHHhcC
Confidence 87 8899999986 89999999999999999887666555553 5788 65321 124667777887776666654
No 60
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.80 E-value=5e-19 Score=171.65 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=154.2
Q ss_pred eEeccC---CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHH
Q psy2383 19 LYIHFP---WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 19 lYihiP---fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~ 95 (391)
+..+|. +|+.+|.||+++...... .......+.++++++... ..+++.++|.||.+..++.+.+.++++.|+
T Consensus 41 ~~~~i~~s~~C~~~C~fC~~~~~~~~~-~~~~ls~eei~~~~~~~~----~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik 115 (340)
T TIGR03699 41 VDRNINYTNICVVGCKFCAFYRAPGHP-EGYVLSVEEILQKIEELV----AYGGTQILLQGGVNPDLGLDYYEDLFRAIK 115 (340)
T ss_pred eecccccchhhccCCccCCcccCCCCc-cccCCCHHHHHHHHHHHH----HcCCcEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 455554 499999999976544221 111234456666665432 235889999988666678888999999998
Q ss_pred HhCC-CCCC----cEEEEeeCC-CCCCHHHHHHhHHCCCCEEE-EecCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhh-c
Q psy2383 96 KLLL-FKKN----ISITLEANP-STFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQY-F 166 (391)
Q Consensus 96 ~~~~-~~~~----~eit~e~~p-~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l~R-~~~~~~~~~~i~~~~~~-~ 166 (391)
+..+ +... .|+..-+.. ...+++.++.|+++|++++. .|+|++++++++.+.+ ..+.++..++++.++++ +
T Consensus 116 ~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi 195 (340)
T TIGR03699 116 ARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGL 195 (340)
T ss_pred HHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 8642 2111 011111111 22348999999999999999 5899999999999864 57999999999999999 8
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc----CCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~----pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
+ +++.+|+|+ |||.+++.+++..+.+++++.+.+..+.|. +|||+.... .++.++..++...++-.|.
T Consensus 196 ~-v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~---~~~~~e~l~~iA~~Rl~lp 267 (340)
T TIGR03699 196 P-TTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKR---PATSTEYLKVLAISRIFLD 267 (340)
T ss_pred C-ccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCC---CCCHHHHHHHHHHHHHcCC
Confidence 7 999999996 999999999999999999887666555442 699987643 3667777787776666654
No 61
>PRK08445 hypothetical protein; Provisional
Probab=99.80 E-value=3e-18 Score=165.71 Aligned_cols=221 Identities=15% Similarity=0.186 Sum_probs=157.6
Q ss_pred ceeEec---cCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHH
Q psy2383 17 LSLYIH---FPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYL 90 (391)
Q Consensus 17 ~~lYih---iPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~l 90 (391)
..+|+. |++ |+.+|.||+|+......... ....+.+++.++... ..+...|++.||.+..++.+.+.++
T Consensus 37 v~~~~~~~~in~Tn~C~~~C~FCa~~~~~~~~~~y-~l~~eeI~~~~~~a~----~~g~~~i~~~gg~~~~~~~e~~~~l 111 (348)
T PRK08445 37 ITTFIVDRNINYTNICWVDCKFCAFYRHLKEDDAY-ILSFEEIDKKIEELL----AIGGTQILFQGGVHPKLKIEWYENL 111 (348)
T ss_pred EEEEecccccccccccccCCccCCCccCCCCCCCe-eCCHHHHHHHHHHHH----HcCCCEEEEecCCCCCCCHHHHHHH
Confidence 445554 776 99999999998764321111 112344444444322 2245688888887778899999999
Q ss_pred HHHHHHhCCCCCCcEEEEee--------CCCCCC-HHHHHHhHHCCCCEEE-EecCCCCHHHHHHh-CCCCCHHHHHHHH
Q psy2383 91 LKNIKKLLLFKKNISITLEA--------NPSTFE-IEKFHSYSIIGINRLS-IGIQSFNNKYLNIL-GRTHDSKQAKYAI 159 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~--------~p~~l~-~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l-~R~~~~~~~~~~i 159 (391)
++.|++.++ .+.+..-. +-..++ +|.++.|+++|++++. +|+||+++++++.+ .+..+.++..+++
T Consensus 112 ~~~Ik~~~p---~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i 188 (348)
T PRK08445 112 VSHIAQKYP---TITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVH 188 (348)
T ss_pred HHHHHHHCC---CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHH
Confidence 999999865 23433211 112344 8999999999999996 89999999999999 6788999999999
Q ss_pred HHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecc----cccCCCcccCCCC-CCCCCHHHHHHHHHH
Q psy2383 160 EIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSL----TIEPNTYFFKYPP-LSMPSNDENAVMQDK 233 (391)
Q Consensus 160 ~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l----~~~pgT~l~~~~~-~~~p~~~~~~~~~~~ 233 (391)
+.++++ ++ ++..+|+|+ +||.++..+.+..+.+++++...+..+ .+.||||+....+ ...++.++..++...
T Consensus 189 ~~a~~~Gi~-~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv 266 (348)
T PRK08445 189 RQAHLIGMK-STATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAV 266 (348)
T ss_pred HHHHHcCCe-eeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHH
Confidence 999999 87 999999997 699999999999999998866333322 2448999976532 223566676776655
Q ss_pred HHHHHHHCCCceeccc
Q psy2383 234 ITSLLKNNYYKNYEIS 249 (391)
Q Consensus 234 ~~~~L~~~Gy~~ye~~ 249 (391)
++-.|. . +.++..+
T Consensus 267 ~Rl~l~-~-~~~i~a~ 280 (348)
T PRK08445 267 SRLFLD-N-FKNIQSS 280 (348)
T ss_pred HHHhCC-C-CCCccCC
Confidence 554443 2 5555444
No 62
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.79 E-value=1.6e-18 Score=167.93 Aligned_cols=208 Identities=14% Similarity=0.181 Sum_probs=151.5
Q ss_pred ceeEeccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHH--------
Q psy2383 17 LSLYIHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDT-------- 85 (391)
Q Consensus 17 ~~lYihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~-------- 85 (391)
++...+|++ |+.+|.||.|+...+.. .....+.++++++...+ .++..+.|.||.+..+..+
T Consensus 10 ~~~~~~i~~Tn~C~~~C~fC~~~~~~~~~---~~ls~eei~~~~~~~~~----~G~~ei~l~gG~~p~~~~~~~~~~~~~ 82 (336)
T PRK06245 10 YSRNVFIPLTYECRNRCGYCTFRRDPGQP---SLLSPEEVKEILRRGAD----AGCTEALFTFGEVPDESYERIKEQLAE 82 (336)
T ss_pred eecceeeeccccccCCCccCCCcCCCCcc---CcCCHHHHHHHHHHHHH----CCCCEEEEecCCCCccchhhhhhhhhh
Confidence 344566766 99999999988765432 13456677777765432 3577888888776444411
Q ss_pred ----HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC---CCCHHHHHHH
Q psy2383 86 ----GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR---THDSKQAKYA 158 (391)
Q Consensus 86 ----~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R---~~~~~~~~~~ 158 (391)
.+.+++..+.+.. ... .+...++|..++++.++.|+++|+. +.+.+||+++.+++.++| .++.++..++
T Consensus 83 ~g~~~~~~~i~~i~~~~-~~~--g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~ 158 (336)
T PRK06245 83 MGYSSILEYLYDLCELA-LEE--GLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLET 158 (336)
T ss_pred hhHHHHHHHHHHHHHHH-hhc--CCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHH
Confidence 1222332222211 011 1233578999999999999999863 567789999999988854 4567888999
Q ss_pred HHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcC-----CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHH
Q psy2383 159 IEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQD 232 (391)
Q Consensus 159 i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~-----~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~ 232 (391)
++.+++. ++ ++.++|+|+ |||.+++.+++..+.+++ ++.+.+++|.|.|||++.... .++.++..+++.
T Consensus 159 i~~a~~~Gi~-~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~---~~s~~e~l~~ia 233 (336)
T PRK06245 159 IENAGKLKIP-FTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHP---EPSLEEMLRVVA 233 (336)
T ss_pred HHHHHHcCCc-eeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCC---CcCHHHHHHHHH
Confidence 9999998 86 899999998 999999999999999885 678999999999999986543 467788888888
Q ss_pred HHHHHHHH
Q psy2383 233 KITSLLKN 240 (391)
Q Consensus 233 ~~~~~L~~ 240 (391)
.++..|..
T Consensus 234 ~~Rl~l~~ 241 (336)
T PRK06245 234 LARLILPP 241 (336)
T ss_pred HHHHHCCC
Confidence 77777643
No 63
>PRK08508 biotin synthase; Provisional
Probab=99.79 E-value=6.7e-18 Score=158.90 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=149.9
Q ss_pred CCCCCCCCCCCCCcccccC-cccHHHHHHHHHHHHHhccCcccCCCeeEEEEe-CCC-CCCCCHHHHHHHHHHHHHhCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKK-NISEKKYLEALLIDVELSLPIILNRKIHTIFIG-GGT-PSLISDTGLDYLLKNIKKLLLF 100 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~g-GGt-ps~l~~~~l~~ll~~i~~~~~~ 100 (391)
..|+.+|.||+++.....+ ........+.++++++...+ .++..+.+. +|. ++-...+.+.++++.|++.++
T Consensus 15 ~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~----~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p- 89 (279)
T PRK08508 15 GNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA----NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP- 89 (279)
T ss_pred CCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH----CCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC-
Confidence 4699999999997754221 11111244666666654322 246677663 332 332244566677777776532
Q ss_pred CCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC
Q psy2383 101 KKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN 179 (391)
Q Consensus 101 ~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg 179 (391)
.+.+.+....+++|.++.|+++|++++.++++| .++..+.+..+++.++..++++.++++ +. ++..+|+|+ |
T Consensus 90 ----~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~sg~I~Gl-G 162 (279)
T PRK08508 90 ----GLHLIACNGTASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEAGLG-LCSGGIFGL-G 162 (279)
T ss_pred ----CcEEEecCCCCCHHHHHHHHHcCCCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCe-ecceeEEec-C
Confidence 234444566789999999999999999999999 578888888889999999999999999 86 999999997 9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 180 QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 180 qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
||.+++.+.+.++.+++++.|.+..+.|.||||+.. . .++.++..++...++-+|.
T Consensus 163 Et~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~---~~~~~~~lr~iAv~Rl~lp 218 (279)
T PRK08508 163 ESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-P---TLSADEALEIVRLAKEALP 218 (279)
T ss_pred CCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-C---CCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999863 2 3566777777766665554
No 64
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.78 E-value=3.4e-18 Score=166.11 Aligned_cols=216 Identities=11% Similarity=0.126 Sum_probs=160.0
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
..|++ |+.+|.||+|+......... ....+.++++++.. ...+++.+++.||...-++.+.+.++++.|++.
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y-~l~~eeI~~~a~~~----~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~ 124 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAY-AMSLEEIVARVKEA----YAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEA 124 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccC-CCCHHHHHHHHHHH----HHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 34555 99999999998765321111 12345666666543 234678888888865456778999999999988
Q ss_pred CCCCCCcEEEEee---------CCCCCCHHHHHHhHHCCCCEEE-EecCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhh-
Q psy2383 98 LLFKKNISITLEA---------NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQY- 165 (391)
Q Consensus 98 ~~~~~~~eit~e~---------~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l~R~~-~~~~~~~~i~~~~~~- 165 (391)
++ .+.+..-+ .....+++.++.|+++|++++. .|+||+++++++.+.+++ +.++..++++.++++
T Consensus 125 ~p---~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~G 201 (351)
T TIGR03700 125 YP---DLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELG 201 (351)
T ss_pred CC---CceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Confidence 63 22332211 1334578889999999999997 699999999999999875 667889999999999
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc----CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~----pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
++ ++..+|+|+ |||.++..+++..+.+++++...+..+.|. +|||+..... ..++..+..++...++-.|.
T Consensus 202 i~-~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~-~~~~~~e~lr~iA~~Rl~l~-- 276 (351)
T TIGR03700 202 LK-TNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLA-KGPTGLDDLKTLAVSRLYLD-- 276 (351)
T ss_pred CC-cceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCC-CCCCHHHHHHHHHHHHHhcC--
Confidence 87 899999997 999999999999999999987666666666 5999975411 23677788888877766663
Q ss_pred CCceeccc
Q psy2383 242 YYKNYEIS 249 (391)
Q Consensus 242 Gy~~ye~~ 249 (391)
.+.+...+
T Consensus 277 ~i~~i~a~ 284 (351)
T TIGR03700 277 NIPHIKAY 284 (351)
T ss_pred CCCccccc
Confidence 36665544
No 65
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.78 E-value=1.8e-17 Score=164.80 Aligned_cols=214 Identities=15% Similarity=0.211 Sum_probs=156.1
Q ss_pred eEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEE-eCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFI-GGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 19 lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~-gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
||+ -++|+.+|.||+|+..... .....-..+.+++|++... ..+++.+.+ +|..|.-.+.+++.++++.|++.
T Consensus 88 Lyi-SN~C~n~C~YCgfs~~n~~-i~r~~Ls~EEI~~ea~~~~----~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~ 161 (469)
T PRK09613 88 LYI-SNYCVNNCVYCGFRRSNKE-IKRKKLTQEEIREEVKALE----DMGHKRLALVAGEDPPNCDIEYILESIKTIYST 161 (469)
T ss_pred ccc-cCCCCCCCccCCCccCCCC-CCceECCHHHHHHHHHHHH----HCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 443 3789999999999876431 1111124566777776543 234555554 77777778899999999999875
Q ss_pred CCC-CCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 98 LLF-KKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 98 ~~~-~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
+.- ....++++++-| +|.+.++.|+++|++++.+..||.++++.+.+ ++.|+.++-.+++++++++ ++.|++.
T Consensus 162 ~~~~g~i~~v~inig~--lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G 239 (469)
T PRK09613 162 KHGNGEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIG 239 (469)
T ss_pred ccccCcceeeEEEeec--CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeE
Confidence 421 112367777655 89999999999999999999999999999998 5578999999999999999 9889999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhc------CCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQY------SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l------~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.|+|||++. ++....+..+..| +|+.||+-.|.|.+|||+...+ ...++++..++....+-.+...|-
T Consensus 240 ~L~GLge~~-~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~--~~vsd~e~lriiA~~RL~~P~~~I 313 (469)
T PRK09613 240 VLFGLYDYK-FEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFP--YLVSDEDFKKIVAILRLAVPYTGM 313 (469)
T ss_pred EEEcCCCCH-HHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCC--CCCCHHHHHHHHHHHHHHCCCCCc
Confidence 999996644 4444555555544 7888999999999999986432 234666666666555444444443
No 66
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.77 E-value=3.3e-18 Score=173.62 Aligned_cols=195 Identities=18% Similarity=0.266 Sum_probs=139.4
Q ss_pred eEeccCC-CCCCCCCCCCCccc-ccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHH-HHH
Q psy2383 19 LYIHFPW-CIKKCPYCDFHSYE-IKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLK-NIK 95 (391)
Q Consensus 19 lYihiPf-C~~~C~yC~~~~~~-~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~-~i~ 95 (391)
.+|-+-- ||.+|.||..+... .+ .....+-++.+...++....... .-++.+++.|+.. +.....++.+.. .+.
T Consensus 200 ~~ve~~RGCp~~C~FC~~~~~~~~r-~~~~~~v~~ei~~~~~~~~~~~~-~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~ 276 (490)
T COG1032 200 FSVETSRGCPRGCRFCSITKHFKYR-RRRPERVVEEIKELIEEGGKRVV-FFVDDIFLYGSPA-LNDEKRFELLSLELIE 276 (490)
T ss_pred EEEEeccCCCCCCCCCCCccccccc-CCCHHHHHHHHHHHHHHhhhcCc-ccccceeecCCcc-ccchhhcccchHHHHH
Confidence 3444443 99999999987653 21 11223333333333333221111 1235666666542 222334444443 333
Q ss_pred HhCCCCCCcEEEEe-eCCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHH-HHHHHHhh-cccceE
Q psy2383 96 KLLLFKKNISITLE-ANPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY-AIEIAKQY-FNNFNL 171 (391)
Q Consensus 96 ~~~~~~~~~eit~e-~~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~-~i~~~~~~-~~~v~~ 171 (391)
+..+-.....+++. .+++.++ ++.++.++.+|+.++.+|+||+|+++++.++|+++.+++.+ +++.+.++ .. +.+
T Consensus 277 ~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~-~~~ 355 (490)
T COG1032 277 RGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLR-VKL 355 (490)
T ss_pred HhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCce-eeE
Confidence 33321223456666 7899998 99999999999999999999999999999999999999995 99999999 65 999
Q ss_pred eEecCCCCCCHHHHHHH---HHHHHhcCCC-eEEEecccccCCCcccCCC
Q psy2383 172 DLIYALPNQTLSELMLD---LNYAIQYSPP-HLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~---l~~~~~l~~~-~is~y~l~~~pgT~l~~~~ 217 (391)
++|+|+||||.+++.++ ++.+.++++. .++++.++|.|||+++...
T Consensus 356 ~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~ 405 (490)
T COG1032 356 YFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMP 405 (490)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchhhcc
Confidence 99999999999999999 7888899986 9999999999999988754
No 67
>PRK06267 hypothetical protein; Provisional
Probab=99.77 E-value=1.9e-17 Score=160.66 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=155.9
Q ss_pred CCCC--CCCCCCCCCccccc--CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCC
Q psy2383 24 PWCI--KKCPYCDFHSYEIK--KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 99 (391)
Q Consensus 24 PfC~--~~C~yC~~~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~ 99 (391)
-+|+ .+|.||+++..... .+....+.++.+++|++...+ .+++.+++.||.+ ++.+.+.++++.+++.-.
T Consensus 35 ~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~----~Gv~~~~lsgG~~--~~~~el~~i~e~I~~~~~ 108 (350)
T PRK06267 35 WYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKR----IGWKLEFISGGYG--YTTEEINDIAEMIAYIQG 108 (350)
T ss_pred CCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHH----cCCCEEEEecCCC--CCHHHHHHHHHHHHHhhC
Confidence 4699 89999999875321 111223467888888875433 2467778888887 578889999999987522
Q ss_pred CCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC
Q psy2383 100 FKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP 178 (391)
Q Consensus 100 ~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP 178 (391)
. .+.++...++.+.+..++..|+ ..|+||+++++++.++++++.++..++++.++++ +. +++.+|+|+
T Consensus 109 ----~--~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~-v~~g~IiGl- 177 (350)
T PRK06267 109 ----C--KQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGLK-TGITIILGL- 177 (350)
T ss_pred ----C--ceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEeC-
Confidence 1 2334455567777766666665 5799999999999999999999999999999999 87 899999996
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2383 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
|||.+++.++++++.+++++.+.+++|+|.|||++...+ .++.++..++...++-.|..
T Consensus 178 gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~---~~s~~e~lr~ia~~Rl~lP~ 236 (350)
T PRK06267 178 GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKP---SVTTLEYMNWVSSVRLNFPK 236 (350)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCC---CCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999987753 47888888888777766653
No 68
>PLN02389 biotin synthase
Probab=99.77 E-value=8.3e-18 Score=163.72 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=168.3
Q ss_pred ecc--CCCCCCCCCCCCCcccccCc-ccHHHHHHHHHHHHHhccCcccCCCeeEEEEe----CCCCCCCCHHHHHHHHHH
Q psy2383 21 IHF--PWCIKKCPYCDFHSYEIKKN-ISEKKYLEALLIDVELSLPIILNRKIHTIFIG----GGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 21 ihi--PfC~~~C~yC~~~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~g----GGtps~l~~~~l~~ll~~ 93 (391)
++| -.|+.+|.||.+......+. .......+.++++++... ..+++.+.++ |+...-..-+++.++++.
T Consensus 86 ~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~----~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ 161 (379)
T PLN02389 86 LSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAK----EAGSTRFCMGAAWRDTVGRKTNFNQILEYVKE 161 (379)
T ss_pred EEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHH----HcCCCEEEEEecccCCCCChhHHHHHHHHHHH
Confidence 455 46999999999976432111 111123455555554332 2246666664 111100123445555555
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
+++. ..++. ++.+.++++.++.|+++|++++.+.++| +++..+.+..+++.++..++++.++++ +. ++..
T Consensus 162 ik~~-----~l~i~--~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~-v~sg 232 (379)
T PLN02389 162 IRGM-----GMEVC--CTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGIS-VCSG 232 (379)
T ss_pred HhcC-----CcEEE--ECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCe-EeEE
Confidence 5431 23443 5667789999999999999999999999 688888888889999999999999999 86 9999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhc--CCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQY--SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l--~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
+|+|+ |||.+++.+++..+.++ .|+.|.+..|+|.||||++... .++..+..++...++-+|..+ ..++.
T Consensus 233 ~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~---~~s~~e~lr~iAi~Rl~lP~~-~i~i~--- 304 (379)
T PLN02389 233 GIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQK---PVEIWEMVRMIATARIVMPKA-MVRLS--- 304 (379)
T ss_pred EEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCC---CCCHHHHHHHHHHHHHHCCCc-ccccc---
Confidence 99999 99999999999999999 6899999999999999997754 367777777776665555432 33222
Q ss_pred cccCCccchhhhhhhc--CC--cEEEeCcCccccccCCCceEEEeecCChHHHHHHHhc
Q psy2383 251 YSKTGYESQHNLNYWK--FG--DYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFS 305 (391)
Q Consensus 251 fa~~g~~~~~n~~yw~--~~--~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~ 305 (391)
.+|. +. ..++|-+||-+.+.+ .++-.+...++++=++.++.
T Consensus 305 ------------~gr~~l~~~~~~~~l~~GAN~~~~g--~~~Ltt~g~~~~~d~~~~~~ 349 (379)
T PLN02389 305 ------------AGRVRFSMAEQALCFLAGANSIFTG--DKLLTTPNNDFDADQAMFKE 349 (379)
T ss_pred ------------ccccccChhHHHHHHHhCCCEEEEC--CcccCCCCCChHHHHHHHHH
Confidence 2231 11 135677777776653 11133344555555666554
No 69
>PRK15108 biotin synthase; Provisional
Probab=99.77 E-value=1.5e-17 Score=160.87 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=154.4
Q ss_pred EeccCCCCCCCCCCCCCcccccC-cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCC--CCCCCCHHHHHHHHHHHHH
Q psy2383 20 YIHFPWCIKKCPYCDFHSYEIKK-NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG--TPSLISDTGLDYLLKNIKK 96 (391)
Q Consensus 20 YihiPfC~~~C~yC~~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGG--tps~l~~~~l~~ll~~i~~ 96 (391)
++.--.|+.+|.||.++.....+ .....-..+.+++.++. ....+++.+.+|+| .|+..+.+.+.++++.+++
T Consensus 47 ~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~----~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~ 122 (345)
T PRK15108 47 SIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARK----AKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA 122 (345)
T ss_pred EEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHH----HHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh
Confidence 44456799999999997633111 10000122333333332 23346778887655 4655566778888888875
Q ss_pred hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec
Q psy2383 97 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 97 ~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~ 175 (391)
. + +++. ++...++.+.++.|+++|++++++.++| +++....+...++.++..++++.++++ +. ++..+|+
T Consensus 123 ~-~----i~v~--~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~-v~sg~i~ 193 (345)
T PRK15108 123 M-G----LETC--MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIK-VCSGGIV 193 (345)
T ss_pred C-C----CEEE--EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCc-eeeEEEE
Confidence 3 2 3444 3355789999999999999999999999 899999998889999999999999999 86 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q psy2383 176 ALPNQTLSELMLDLNYAIQY--SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l--~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 246 (391)
|+ |||.++..+.+..+.++ .++.|.+..+.|.||||+....+ .+..+..++...++-.| ...+.++
T Consensus 194 Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~---~~~~e~lr~iAi~Rl~l-p~~~i~i 261 (345)
T PRK15108 194 GL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDD---VDAFDFIRTIAVARIMM-PTSYVRL 261 (345)
T ss_pred eC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCC---CCHHHHHHHHHHHHHHC-CCceeee
Confidence 98 99999999999999999 67899999999999999976532 35667777776555544 3344443
No 70
>PRK12928 lipoyl synthase; Provisional
Probab=99.76 E-value=6.6e-17 Score=152.18 Aligned_cols=213 Identities=10% Similarity=0.105 Sum_probs=151.8
Q ss_pred ceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCC-CC--CCHHHHHHHHH
Q psy2383 17 LSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP-SL--ISDTGLDYLLK 92 (391)
Q Consensus 17 ~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtp-s~--l~~~~l~~ll~ 92 (391)
..-|+.+- -|+..|+||.++... ... ...+.++++++... ..+++.|.+.||+- .+ .+.+.+.++++
T Consensus 60 ~~tfv~is~gC~~~C~FCa~~~g~--~~~---~~~eei~~~a~~~~----~~G~keivitg~~~dDl~d~g~~~~~ell~ 130 (290)
T PRK12928 60 TATFLIMGSICTRRCAFCQVDKGR--PMP---LDPDEPERVAEAVA----ALGLRYVVLTSVARDDLPDGGAAHFVATIA 130 (290)
T ss_pred EEEEEEecccccCcCCCCCccCCC--CCC---CCHHHHHHHHHHHH----HCCCCEEEEEEEeCCcccccCHHHHHHHHH
Confidence 45566665 499999999988722 111 22334444444322 12466666666542 21 24567899999
Q ss_pred HHHHhCCCCCCcEEEEee-CCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc--c
Q psy2383 93 NIKKLLLFKKNISITLEA-NPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF--N 167 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~-~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~--~ 167 (391)
.|++..+ .+ .+++ .|+.+ ..+.|+.|+++|...+..++|| ++++++.|+|+++.++..+.++.+++.. -
T Consensus 131 ~Ik~~~p---~~--~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i 204 (290)
T PRK12928 131 AIRARNP---GT--GIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDI 204 (290)
T ss_pred HHHhcCC---CC--EEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCc
Confidence 9987643 23 4444 66555 5788999999999999999997 4999999999999999999999999984 4
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc--cCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI--EPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~--~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
.++.++|+|+ |||.+++.++++.+.+++++.+.++++.. ..+.|..+... | +.++.|. +.-.+.||.+
T Consensus 205 ~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~---~---~~f~~~~---~~~~~~g~~~ 274 (290)
T PRK12928 205 PTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWT---P---EEFEALG---QIARELGFSH 274 (290)
T ss_pred eecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccC---H---HHHHHHH---HHHHHcCCce
Confidence 5899999999 99999999999999999999999999864 23344444322 2 3344443 3344689988
Q ss_pred ecccccccC
Q psy2383 246 YEISAYSKT 254 (391)
Q Consensus 246 ye~~~fa~~ 254 (391)
.+-.-+.|.
T Consensus 275 ~~~~p~~rs 283 (290)
T PRK12928 275 VRSGPLVRS 283 (290)
T ss_pred eEecCcccc
Confidence 765555553
No 71
>PRK00955 hypothetical protein; Provisional
Probab=99.75 E-value=2.3e-17 Score=167.17 Aligned_cols=189 Identities=15% Similarity=0.215 Sum_probs=129.5
Q ss_pred eEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeE-EE-EeCCCCCC--------------
Q psy2383 19 LYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHT-IF-IGGGTPSL-------------- 81 (391)
Q Consensus 19 lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~-i~-~gGGtps~-------------- 81 (391)
.+|.|-- |+..|+||..+...+ +..+.+.++.+++|++.....- +++- |. +||-|.+.
T Consensus 294 ~sI~i~RGC~g~CSFCaIp~~rG--r~~rSRs~esIv~Evk~L~~~~---gfkg~I~DlgGptan~Yg~~c~~~~~~~~c 368 (620)
T PRK00955 294 FSITSHRGCFGGCSFCAITFHQG--RFIQSRSQESILREAKELTEMP---DFKGYIHDVGGPTANFRKMACKKQLKCGAC 368 (620)
T ss_pred EEEEeeCCCCCCCCCCCeecccC--CcceecCHHHHHHHHHHHHhcc---CCeEEEEeCCCCCccccccccccccccccc
Confidence 4444443 999999998877764 3345788999999998764321 1111 11 33322111
Q ss_pred ---------------CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC----CHHHHHHhHHCCCC-EEEEecCCCCHH
Q psy2383 82 ---------------ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF----EIEKFHSYSIIGIN-RLSIGIQSFNNK 141 (391)
Q Consensus 82 ---------------l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l----~~e~l~~l~~~Gv~-risiGvqS~~~~ 141 (391)
.+...+.+|++.|++.-++. .+.|+.-++++.+ +++.++.|.+.++. .+.||+||++++
T Consensus 369 ~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvk-rv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~ 447 (620)
T PRK00955 369 KNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVK-KVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDR 447 (620)
T ss_pred cccccccCccccccCcChHHHHHHHHHHhccCCce-EEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChH
Confidence 13346778888776642221 1222222344432 45678888776544 799999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHH----hh-c-ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCccc
Q psy2383 142 YLNILGRTHDSKQAKYAIEIAK----QY-F-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF 214 (391)
Q Consensus 142 ~l~~l~R~~~~~~~~~~i~~~~----~~-~-~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 214 (391)
+|+.|+|+ +.+.+.+.++.++ ++ + ..+..|||+|+||||.+++.++++++.+++++.++++.++|.|||+-.
T Consensus 448 VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At 525 (620)
T PRK00955 448 VLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLST 525 (620)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchh
Confidence 99999998 5555555544333 33 2 137889999999999999999999999999999999999999998754
No 72
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.74 E-value=3.2e-17 Score=157.54 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=152.8
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCC-CCCC--------------
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT-PSLI-------------- 82 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGt-ps~l-------------- 82 (391)
.||+| |+..|.||.|+...+. ........+.++++++...+ .+++.+.+.||. |..-
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~g~-~~~~~l~~eeI~~~a~~~~~----~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGE-LEAALLSPEEVLEILRKGAA----AGCTEALFTFGEKPEERYPEAREWLAEMGYD 80 (322)
T ss_pred EEeccccCcCCCCccCCccccCCC-cccccCCHHHHHHHHHHHHH----CCCCEEEEecCCCccccHHHHHHHHHhcCCc
Confidence 35665 9999999999876542 11223456777777765433 245667676554 4331
Q ss_pred -CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC----CHHHHHH
Q psy2383 83 -SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH----DSKQAKY 157 (391)
Q Consensus 83 -~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~----~~~~~~~ 157 (391)
..+.+.++++.+++..++ ...++++.+|++.++.|+++|+. +.+.+||+++.+++.+++.+ +.++..+
T Consensus 81 ~~~~~~~~~~~~i~~e~~~------~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~ 153 (322)
T TIGR03550 81 STLEYLRELCELALEETGL------LPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLE 153 (322)
T ss_pred cHHHHHHHHHHHHHHhcCC------ccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHH
Confidence 125666677777654332 33467888999999999999986 48889999999876665544 5678899
Q ss_pred HHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcC-----CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHH
Q psy2383 158 AIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQ 231 (391)
Q Consensus 158 ~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~-----~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~ 231 (391)
+++.+++. ++ ++.++|+|+ |||.+++.+++..+.+++ ++.+.+.++.|.||||+.... .++..+..++.
T Consensus 154 ~i~~a~~~Gi~-~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~---~~s~~e~lr~i 228 (322)
T TIGR03550 154 TIEDAGRLKIP-FTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHP---EPSLEEMLRTV 228 (322)
T ss_pred HHHHHHHcCCC-ccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCC---CCCHHHHHHHH
Confidence 99999999 87 999999997 999999999999999887 677888999999999997543 36677777777
Q ss_pred HHHHHHHHHCCCceeccc
Q psy2383 232 DKITSLLKNNYYKNYEIS 249 (391)
Q Consensus 232 ~~~~~~L~~~Gy~~ye~~ 249 (391)
..++-.|.. +.++..+
T Consensus 229 Av~Rl~l~~--~~~I~~~ 244 (322)
T TIGR03550 229 AVARLILPP--DISIQVP 244 (322)
T ss_pred HHHHHHcCC--CCeeecC
Confidence 666555522 4444444
No 73
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.74 E-value=1.3e-16 Score=137.28 Aligned_cols=160 Identities=23% Similarity=0.426 Sum_probs=124.2
Q ss_pred CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 103 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~ 103 (391)
.-|+.+|.||........ ........+.++++++... ...++..+.++||+|+..+. +.+++..+.+.. ...
T Consensus 5 ~~C~~~C~fC~~~~~~~~-~~~~~~~~e~i~~~~~~~~---~~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~--~~~ 76 (166)
T PF04055_consen 5 RGCNLNCSFCYYPRSRRK-NKPREMSPEEILEEIKELK---QDKGVKEIFFGGGEPTLHPD--FIELLELLRKIK--KRG 76 (166)
T ss_dssp SEESS--TTTSTTTTCCT-CGCEECHHHHHHHHHHHHH---HHTTHEEEEEESSTGGGSCH--HHHHHHHHHHCT--CTT
T ss_pred cCcCccCCCCCCCccCCC-cccccCCHHHHHHHHHHHh---HhcCCcEEEEeecCCCcchh--HHHHHHHHHHhh--ccc
Confidence 469999999998874111 1122234555666665542 11238999999999998643 455555555432 346
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHH-HHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNK-YLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~-~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
..+++.+++...+++.++.++++|+++|.+|+||.+++ +++.+++.++.+++.++++.++++ ++ ....+|+|+||+|
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~-~~~~~i~~~~~~~ 155 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP-RVIIFIVGLPGEN 155 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE-TEEEEEEEBTTTS
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC-cEEEEEEEeCCCC
Confidence 78999999988889999999999999999999999999 999999999999999999999999 76 3788999999999
Q ss_pred HHHHHHHHHHH
Q psy2383 182 LSELMLDLNYA 192 (391)
Q Consensus 182 ~e~~~~~l~~~ 192 (391)
.+++.++++++
T Consensus 156 ~~e~~~~~~~i 166 (166)
T PF04055_consen 156 DEEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhCcC
Confidence 99999999875
No 74
>PRK05481 lipoyl synthase; Provisional
Probab=99.74 E-value=3.8e-16 Score=147.42 Aligned_cols=216 Identities=10% Similarity=0.070 Sum_probs=155.5
Q ss_pred ceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC---CCHHHHHHHHH
Q psy2383 17 LSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL---ISDTGLDYLLK 92 (391)
Q Consensus 17 ~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~---l~~~~l~~ll~ 92 (391)
...||.+- .|+.+|+||.++...+ . ....+.+++|++.... .+++.|.+.||+-.- ...+.+.++++
T Consensus 53 ~~~fi~is~GC~~~C~FC~i~~~r~--~---s~~~eeI~~ea~~l~~----~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~ 123 (289)
T PRK05481 53 TATFMILGDICTRRCPFCDVATGRP--L---PLDPDEPERVAEAVAR----MGLKYVVITSVDRDDLPDGGAQHFAETIR 123 (289)
T ss_pred eEEEEEecccccCCCCCceeCCCCC--C---CCCHHHHHHHHHHHHH----CCCCEEEEEEeeCCCcccccHHHHHHHHH
Confidence 34555554 4999999999887542 1 1345666677765432 257788877775211 24467889999
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccc
Q psy2383 93 NIKKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNF 169 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v 169 (391)
.|++.++ ...+.+- .|..+ ..+.+..++++|.+.+..+.+|. +++++.|+|+++.++..++++.+++. .-.+
T Consensus 124 ~I~~~~p---~irI~~l-~~~~~~~~e~L~~l~~ag~~i~~~~~ets-~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~ 198 (289)
T PRK05481 124 AIRELNP---GTTIEVL-IPDFRGRMDALLTVLDARPDVFNHNLETV-PRLYKRVRPGADYERSLELLKRAKELHPGIPT 198 (289)
T ss_pred HHHhhCC---CcEEEEE-ccCCCCCHHHHHHHHhcCcceeeccccCh-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 8887643 2333332 33333 34677788899999999999995 89999999999999999999999998 4458
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~ 249 (391)
+.|+|+|+ |||.+++.++++.+.+++++++.++++.+ |. ++.. ..|. +...+.++...+...+-||....-.
T Consensus 199 ~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~-pa---~k~~--~v~~-~~k~~r~~~l~~~~~~i~~~~~~~~ 270 (289)
T PRK05481 199 KSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ-PS---RKHL--PVER-YVTPEEFDEYKEIALELGFLHVASG 270 (289)
T ss_pred eeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC-Cc---cccC--CCCC-cCCHHHHHHHHHHHHHcCchheEec
Confidence 89999999 99999999999999999999999999988 32 2111 1232 2334455666778888999765444
Q ss_pred ccccC
Q psy2383 250 AYSKT 254 (391)
Q Consensus 250 ~fa~~ 254 (391)
-++|.
T Consensus 271 ~~~~~ 275 (289)
T PRK05481 271 PLVRS 275 (289)
T ss_pred Ccccc
Confidence 45554
No 75
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.72 E-value=3.4e-16 Score=147.69 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=153.9
Q ss_pred ceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCC-CCC--CCHHHHHHHHH
Q psy2383 17 LSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT-PSL--ISDTGLDYLLK 92 (391)
Q Consensus 17 ~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGt-ps~--l~~~~l~~ll~ 92 (391)
...|+-|. -|+.+|+||.++...+.... ..+.+.++++... ..+++.|.+.|++ +.+ ...+.+.++++
T Consensus 63 tatfm~i~~gC~~~C~FC~v~~~rg~~~~----~~eei~~~a~~~~----~~GlkevvLTsv~~ddl~d~g~~~l~~li~ 134 (302)
T TIGR00510 63 TATFMILGDICTRRCPFCDVAHGRNPLPP----DPEEPAKLAETIK----DMGLKYVVITSVDRDDLEDGGASHLAECIE 134 (302)
T ss_pred EEEEEecCcCcCCCCCcCCccCCCCCCCC----CHHHHHHHHHHHH----HCCCCEEEEEeecCCCcccccHHHHHHHHH
Confidence 45676666 59999999998654322111 1233444554432 2356777776654 333 23457888888
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccc
Q psy2383 93 NIKKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNF 169 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v 169 (391)
.|++..+ .+.+.+- .|+.. +.+.++.|+++|++.+..++||. +++++.++|+++.++..+.++.+++. .-.+
T Consensus 135 ~I~~~~p---~i~Ievl-~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~ 209 (302)
T TIGR00510 135 AIREKLP---NIKIETL-VPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPT 209 (302)
T ss_pred HHHhcCC---CCEEEEe-CCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 8877532 3334332 33322 78899999999999999999998 88999999999999999999999998 2348
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc-c-cCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceec
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT-I-EPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYE 247 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~-~-~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye 247 (391)
+.++|+|+ |||.+++.++++.+.+++++.+.+.++. | .+++|+.+... | +.+++|. +.-.+.||.+.+
T Consensus 210 ~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~---p---~~f~~~~---~~a~~~gf~~v~ 279 (302)
T TIGR00510 210 KSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVS---P---EEFDYYR---SVALEMGFLHAA 279 (302)
T ss_pred cceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCC---H---HHHHHHH---HHHHHcCChheE
Confidence 99999999 9999999999999999999999999865 4 45677666443 3 3344443 334568998876
Q ss_pred ccccccC
Q psy2383 248 ISAYSKT 254 (391)
Q Consensus 248 ~~~fa~~ 254 (391)
-.-+.|.
T Consensus 280 ~~p~vrs 286 (302)
T TIGR00510 280 CGPFVRS 286 (302)
T ss_pred ecccchh
Confidence 5555553
No 76
>PRK08444 hypothetical protein; Provisional
Probab=99.72 E-value=2.8e-16 Score=151.84 Aligned_cols=205 Identities=15% Similarity=0.112 Sum_probs=151.6
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
.+|++ |...|.||+|+........ ..-..+.+++.++. ....++..+.+.||.....+.+.+.++++.|++.
T Consensus 51 ~~In~TN~C~~~C~FCaf~~~~~~~~~-y~ls~eeI~~~a~~----a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~ 125 (353)
T PRK08444 51 RHINPTNICADVCKFCAFSAHRKNPNP-YTMSHEEILEIVKN----SVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEA 125 (353)
T ss_pred CCcccccccccCCccCCCccCCCCCcc-ccCCHHHHHHHHHH----HHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHH
Confidence 35655 9999999999876532211 11122334444433 2334577776666543334778899999999987
Q ss_pred CCCCCCcEEEE----e----e-CCCCCCHHHHHHhHHCCCCEEEE-ecCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhh-
Q psy2383 98 LLFKKNISITL----E----A-NPSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQY- 165 (391)
Q Consensus 98 ~~~~~~~eit~----e----~-~p~~l~~e~l~~l~~~Gv~risi-GvqS~~~~~l~~l~R~~-~~~~~~~~i~~~~~~- 165 (391)
++ .+.+.. | + .-+...+|.++.|+++|++++.- |.|.|+|++++.+...+ +.++..+.++.++++
T Consensus 126 ~p---~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~G 202 (353)
T PRK08444 126 YP---NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKG 202 (353)
T ss_pred CC---CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Confidence 54 233332 1 0 22334679999999999999987 69999999999999876 457788888999999
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc----CCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~----pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
++ ++.-+|||+ |||.++..+.+..+.+++.+.+.+..|.|. +|||+.... .++..+..++...++-+|
T Consensus 203 i~-~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~---~~~~~e~Lr~iAi~Rl~L 274 (353)
T PRK08444 203 KM-SNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEK---FPSSQEILKTIAISRILL 274 (353)
T ss_pred CC-ccceeEEec-CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCC---CCCHHHHHHHHHHHHHhc
Confidence 87 899999999 599999999999999999999988888888 899997543 366777777776666555
No 77
>PRK01254 hypothetical protein; Provisional
Probab=99.71 E-value=2.8e-16 Score=158.26 Aligned_cols=195 Identities=12% Similarity=0.128 Sum_probs=146.4
Q ss_pred CceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEE--EeCCCCCCC----------
Q psy2383 16 PLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIF--IGGGTPSLI---------- 82 (391)
Q Consensus 16 ~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~--~gGGtps~l---------- 82 (391)
.+-.||-|-- |+..|+||..+...++ ..+.|..+.+++|++...... .+++.+. +||-|.+..
T Consensus 371 ~i~~sV~i~RGC~g~CSFCaI~~hqGr--~irSRS~esIL~Ea~~L~~~~--pGfKgii~DLgGptaN~YG~~c~d~~~~ 446 (707)
T PRK01254 371 MIRFSVNIMRGCFGGCSFCSITEHEGR--IIQSRSEESIINEIEAIRDKV--PGFTGVISDLGGPTANMYRLRCKSPRAE 446 (707)
T ss_pred heEEEEEEccCCCCCCCccccccccCC--eeeeCCHHHHHHHHHHHHHhC--CCcEEEEeccCCCccccccccccccccc
Confidence 3345666655 9999999998877743 345678899999998764321 2455555 555443332
Q ss_pred -------------------CHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCC---CHHHHHHhHHCCCC-EEEEecCCC
Q psy2383 83 -------------------SDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTF---EIEKFHSYSIIGIN-RLSIGIQSF 138 (391)
Q Consensus 83 -------------------~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l---~~e~l~~l~~~Gv~-risiGvqS~ 138 (391)
+...+.+|++.|++. .....+.+-. .|..+ +++.++.|.+.+|. .+.|++||.
T Consensus 447 ~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~I---pGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~ 523 (707)
T PRK01254 447 QTCRRLSCVYPDICPHLDTDHEPTINLYRRARDL---KGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHT 523 (707)
T ss_pred cccccccccCcccccccCCCHHHHHHHHHHHHhC---CCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccC
Confidence 224567777777653 2223455544 46666 48999999998876 899999999
Q ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHhh-cccc--eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC---C
Q psy2383 139 NNKYLNILGRT--HDSKQAKYAIEIAKQY-FNNF--NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP---N 210 (391)
Q Consensus 139 ~~~~l~~l~R~--~~~~~~~~~i~~~~~~-~~~v--~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p---g 210 (391)
++++|+.|+|+ .+.+++.+.++.+++. -..+ ..+||+|+||+|.+++.++++++.+++.+--++..++|.| +
T Consensus 524 Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~ 603 (707)
T PRK01254 524 EEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANA 603 (707)
T ss_pred CHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCc
Confidence 99999999998 6889999999999888 3234 4499999999999999999999999987777777889999 7
Q ss_pred CcccCCC
Q psy2383 211 TYFFKYP 217 (391)
Q Consensus 211 T~l~~~~ 217 (391)
|.|+...
T Consensus 604 T~MYytg 610 (707)
T PRK01254 604 TTMYYTG 610 (707)
T ss_pred hHHHhcc
Confidence 7776543
No 78
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.69 E-value=4.8e-16 Score=146.36 Aligned_cols=200 Identities=13% Similarity=0.098 Sum_probs=146.3
Q ss_pred CCCCCCCCCCCCCcccccCc-ccHHHHHHHHHHHHHhccCcccCCC-eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKN-ISEKKYLEALLIDVELSLPIILNRK-IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 101 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~-~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~ 101 (391)
--||..|.||+++.....+- .......+.++++.+.. ...+ .+.....+|--.--..+.+.+++..+++..+
T Consensus 59 g~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~a----k~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~-- 132 (335)
T COG0502 59 GCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKA----KAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG-- 132 (335)
T ss_pred CCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHH----HHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC--
Confidence 34899999999988662211 11111234444444332 2223 2333333332111234455666666665433
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ 180 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq 180 (391)
+-+.++.+.++++.++.|+++|++++.-.++| +++..+.+.-+||.++-.++++.++++ +. ++...|+|+ ||
T Consensus 133 ----le~c~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~Gi~-vcsGgI~Gl-GE 205 (335)
T COG0502 133 ----LEVCASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAGIE-VCSGGIVGL-GE 205 (335)
T ss_pred ----cHHhhccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcCCc-cccceEecC-CC
Confidence 23334677899999999999999999999999 999999999999999999999999999 87 999999999 99
Q ss_pred CHHHHHHHHHHHHhcC-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 181 TLSELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 181 t~e~~~~~l~~~~~l~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
|.+|..+.+..+.++. |+.|.++.|.|.||||+...++ .+..+..++...++-.+.
T Consensus 206 s~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~---~~~~e~lk~IA~~Ri~~P 262 (335)
T COG0502 206 TVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKP---LDPFEFLKTIAVARIIMP 262 (335)
T ss_pred CHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCC---CCHHHHHHHHHHHHHHCC
Confidence 9999999999999999 9999999999999999997543 455666666665555443
No 79
>PLN02428 lipoic acid synthase
Probab=99.66 E-value=1.6e-14 Score=137.95 Aligned_cols=209 Identities=11% Similarity=0.105 Sum_probs=143.1
Q ss_pred CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCC---CCCCHHHHHHHHHHHHHhCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP---SLISDTGLDYLLKNIKKLLLF 100 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtp---s~l~~~~l~~ll~~i~~~~~~ 100 (391)
--|+..|.||++........ ....-+..+.+++.. .+++.+.+-+|+- .-...+.+.++++.|++..+
T Consensus 110 ~gCtr~CrFCav~~~~~p~~-~d~~Ep~~vA~~v~~-------~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P- 180 (349)
T PLN02428 110 DTCTRGCRFCAVKTSRTPPP-PDPDEPENVAEAIAS-------WGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKP- 180 (349)
T ss_pred CCCCCCCCCCcCCCCCCCCC-CChhhHHHHHHHHHH-------cCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCC-
Confidence 46999999999876442111 111122233333322 2345566555531 22356688888998887643
Q ss_pred CCCcEEEEee-CCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC-CCCCHHHHHHHHHHHHhh--cccceEeEec
Q psy2383 101 KKNISITLEA-NPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQY--FNNFNLDLIY 175 (391)
Q Consensus 101 ~~~~eit~e~-~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~-R~~~~~~~~~~i~~~~~~--~~~v~~dlI~ 175 (391)
.+.+++ .|+.+ +++.++.|+++|++++..++|+ .+++++.++ +.++.++..++++.+++. .-.+...+|+
T Consensus 181 ----~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~Mv 255 (349)
T PLN02428 181 ----EILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIML 255 (349)
T ss_pred ----CcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Confidence 346665 67665 8999999999999999999997 889999999 789999999999999998 3337789999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccccccC
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKT 254 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~ 254 (391)
|+ |||.+++.++++.+.+++++.+.+-.+. .| |..+-... ....+ +.++.| .+.-.+.||.+.+-.-+.|.
T Consensus 256 GL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~P-s~~h~~v~-~~v~p-~~f~~~---~~~~~~~gf~~v~sgp~vrs 326 (349)
T PLN02428 256 GL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RP-TKRHLPVK-EYVTP-EKFEFW---REYGEEMGFRYVASGPLVRS 326 (349)
T ss_pred ec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CC-Ccceeeee-cccCH-HHHHHH---HHHHHHcCCceEEecCcccc
Confidence 99 9999999999999999999999886653 33 22111111 11122 233433 34455689988765555543
No 80
>PRK05926 hypothetical protein; Provisional
Probab=99.66 E-value=3.5e-15 Score=145.08 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=151.6
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
+||+| |+..|.||+|...... .....-..+.++++++.. . .+++.+.+.||...-++.+.+.++++.|++.
T Consensus 70 ~nin~Tn~C~~dC~FCaf~~~~~~-~~~~~ls~eeI~~~a~~a-~----~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~ 143 (370)
T PRK05926 70 LYLYPTNFCQFNCTFCSFYAKPGD-PKGWFYTPDQLVQSIKEN-P----SPITETHIVAGCFPSCNLAYYEELFSKIKQN 143 (370)
T ss_pred eeeecCCCCCCCCCccccccCCCC-cccccCCHHHHHHHHHHH-h----cCCCEEEEEeCcCCCCCHHHHHHHHHHHHHh
Confidence 35544 9999999998765422 111111234555555443 1 3477777776665447888999999999987
Q ss_pred CCCCCCcEEEEee---------CCCCCCHHHHHHhHHCCCCEEEE-ecCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhh-
Q psy2383 98 LLFKKNISITLEA---------NPSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGR-THDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 98 ~~~~~~~eit~e~---------~p~~l~~e~l~~l~~~Gv~risi-GvqS~~~~~l~~l~R-~~~~~~~~~~i~~~~~~- 165 (391)
++ .+.+..-. .....+++.++.|+++|++++.. |.|++++++++.+.. ..+.++..++++.++++
T Consensus 144 ~p---~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~G 220 (370)
T PRK05926 144 FP---DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLG 220 (370)
T ss_pred CC---CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Confidence 64 22322111 11223588899999999999996 699999999998864 56889999999999999
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc----cCCCcccCCCC-CCCCCHHHHHHHHHHHHHHHHH
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI----EPNTYFFKYPP-LSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~----~pgT~l~~~~~-~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
++ ++.-+|+|+ |||.++..+.+..+.+++++.+.+-++.| .++|++..... ....+..+..++...++=+|.
T Consensus 221 i~-~~sgmi~G~-gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~- 297 (370)
T PRK05926 221 IP-SNATMLCYH-RETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLD- 297 (370)
T ss_pred Cc-ccCceEEeC-CCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcC-
Confidence 87 777788885 99999999999999999999999988887 67888764211 112444556677666655553
Q ss_pred CCCceec
Q psy2383 241 NYYKNYE 247 (391)
Q Consensus 241 ~Gy~~ye 247 (391)
.+.+..
T Consensus 298 -n~~~iq 303 (370)
T PRK05926 298 -NFPNIK 303 (370)
T ss_pred -CCcccc
Confidence 344443
No 81
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.65 E-value=5e-15 Score=144.88 Aligned_cols=204 Identities=13% Similarity=0.137 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCC-CCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy2383 25 WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG-TPSLISDTGLDYLLKNIKKLLLFKKN 103 (391)
Q Consensus 25 fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGG-tps~l~~~~l~~ll~~i~~~~~~~~~ 103 (391)
.|+.+|.||+|.......... ....+.+++.++. ....++..+.+.|| .|..-..+.+.++++.|++.++ .
T Consensus 69 ~C~~~C~fC~~~~~~~~~~~y-~ls~eeI~~~a~~----a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~---~ 140 (371)
T PRK07360 69 ICEGHCGFCAFRRDEGDHGAF-WLTIAEILEKAAE----AVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFP---D 140 (371)
T ss_pred hhhcCCccCCcccCCCCCCCe-eCCHHHHHHHHHH----HHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCC---C
Confidence 499999999998763211101 1123334433332 23346788888887 4654337788899999988653 2
Q ss_pred cEEEE----ee-----CCCCCCHHHHHHhHHCCCCEEE-EecCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhh-cccceE
Q psy2383 104 ISITL----EA-----NPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQY-FNNFNL 171 (391)
Q Consensus 104 ~eit~----e~-----~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l~R~-~~~~~~~~~i~~~~~~-~~~v~~ 171 (391)
+.+.. |. +.+..+++.++.|+++|++++. -|.+.+++++++.+... .+.++..++++.++++ ++ ++.
T Consensus 141 i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~-~~s 219 (371)
T PRK07360 141 IHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLP-TTS 219 (371)
T ss_pred cceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCC-cee
Confidence 23332 11 3456678999999999999996 56788999999888765 5889999999999999 87 899
Q ss_pred eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc----CCCcccCCCCC-CCCCHHHHHHHHHHHHHHH
Q psy2383 172 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPL-SMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~----pgT~l~~~~~~-~~p~~~~~~~~~~~~~~~L 238 (391)
.+|+|+ |||.++..+.+..+.+++++...+-++.|. +|||+...... ..++..+..++...++-.|
T Consensus 220 g~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~l 290 (371)
T PRK07360 220 TMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFL 290 (371)
T ss_pred eEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhc
Confidence 999998 999999999999999999988777666653 59999765421 1234445566665554444
No 82
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.63 E-value=4.7e-14 Score=136.17 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=132.4
Q ss_pred eeEeccC-CCCCCCCCCCCCcccc--cCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 18 SLYIHFP-WCIKKCPYCDFHSYEI--KKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 18 ~lYihiP-fC~~~C~yC~~~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
.|.|+|- .|+.+|.||....... +......+.+..+++++. ..++..|.|.||.|.+ . .++.++++.+
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~-------~~Gv~~I~~tGGEPll-r-~dl~~li~~i 85 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFT-------ELGVRKIRLTGGEPLV-R-RGCDQLVARL 85 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHH-------HCCCCEEEEECcCCCc-c-ccHHHHHHHH
Confidence 3444443 4999999997432211 111122223344444443 2358899999999976 3 3577888888
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
++...+ ..+++.+|...++ +.++.|+++|+++|+++++|.++++.+++.|..+.+++.++++.++++ +..+.+..
T Consensus 86 ~~~~~l---~~i~itTNG~ll~-~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~ 161 (329)
T PRK13361 86 GKLPGL---EELSLTTNGSRLA-RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNA 161 (329)
T ss_pred HhCCCC---ceEEEEeChhHHH-HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 764222 2688889976665 689999999999999999999999999999999999999999999999 74477766
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCC
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPN 210 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pg 210 (391)
++ +||++.+++.+.++++.+++++ +.+..++|..+
T Consensus 162 v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~ 196 (329)
T PRK13361 162 VI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGE 196 (329)
T ss_pred EE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCC
Confidence 54 6899999999999999999986 55666776543
No 83
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.63 E-value=9.8e-14 Score=136.65 Aligned_cols=177 Identities=15% Similarity=0.260 Sum_probs=137.5
Q ss_pred CCCceeEeccCC-CCCCCCCCCCCccccc-CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHH
Q psy2383 14 LPPLSLYIHFPW-CIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLL 91 (391)
Q Consensus 14 ~~~~~lYihiPf-C~~~C~yC~~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll 91 (391)
..|+.++++|.. |+.+|.||.......+ ......+-+..+++++.. .++..|.|.||.|.+ .+ ++.+++
T Consensus 13 ~~P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~-------~g~~~v~~~GGEPll-~~-~~~~il 83 (378)
T PRK05301 13 GPPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA-------LGALQLHFSGGEPLL-RK-DLEELV 83 (378)
T ss_pred CCCeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH-------cCCcEEEEECCccCC-ch-hHHHHH
Confidence 367899999988 9999999975432211 111222334445555532 246789999999977 44 477888
Q ss_pred HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhh-cccc
Q psy2383 92 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQY-FNNF 169 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~-~~~~~~~~~i~~~~~~-~~~v 169 (391)
+.+++. +..+++.+|...++++.++.|+++|++.|+|++++.++++.+.+.+. .+.+.+.++++.+++. +. +
T Consensus 84 ~~~~~~-----g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~-v 157 (378)
T PRK05301 84 AHAREL-----GLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYP-L 157 (378)
T ss_pred HHHHHc-----CCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCc-e
Confidence 888763 24578888998899999999999999999999999999999888655 4899999999999998 65 5
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
.+ .+.++.++.+++.+.++++.+++++++.+..+.+
T Consensus 158 ~i--~~vv~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 158 TL--NAVIHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred EE--EEEeecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 54 4456899999999999999999999998876543
No 84
>PRK05927 hypothetical protein; Provisional
Probab=99.62 E-value=3.3e-15 Score=144.30 Aligned_cols=210 Identities=12% Similarity=0.158 Sum_probs=149.0
Q ss_pred ccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhC
Q psy2383 22 HFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 98 (391)
Q Consensus 22 hiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~ 98 (391)
+|.| |..+|.||+|......... ..-..+.+++.++.. ...++..+.+.||...-.+.+.+.++++.|++.+
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~-y~ls~eei~~~a~~~----~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~ 122 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDA-YLLSFDEFRSLMQRY----VSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEF 122 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccc-cccCHHHHHHHHHHH----HHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4554 9999999999875422110 011223344444332 2235677777777755578889999999999876
Q ss_pred C-CCC----CcEEE-EeeCCCCCCHHHHHHhHHCCCCEEEE-ecCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhh-cccc
Q psy2383 99 L-FKK----NISIT-LEANPSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQY-FNNF 169 (391)
Q Consensus 99 ~-~~~----~~eit-~e~~p~~l~~e~l~~l~~~Gv~risi-GvqS~~~~~l~~l~R~~-~~~~~~~~i~~~~~~-~~~v 169 (391)
+ +.. .+|++ +..+.+..++|.++.|+++|++++.= |.|++++.+.+.+.... +.++-.+.++.+++. ++ +
T Consensus 123 p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~-~ 201 (350)
T PRK05927 123 PSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFR-S 201 (350)
T ss_pred CCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCC-c
Confidence 4 321 12333 12346778999999999999988876 89999999999998744 679999999999999 87 9
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc----CCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE----PNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~----pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
+..+|||+ |||.++..+.+..+.+++-+...+-.+.+. ++||+..... ..++.++..++...++-+|.
T Consensus 202 ~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~-~~~s~~e~Lr~iAv~Rl~lp 273 (350)
T PRK05927 202 TATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVP-HQASPELYYRILAVARIFLD 273 (350)
T ss_pred CceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCC-CCCCHHHHHHHHHHHHHhCC
Confidence 99999999 999999999999999998443334433333 4799865321 13667777777766655553
No 85
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.59 E-value=3.3e-13 Score=131.96 Aligned_cols=175 Identities=15% Similarity=0.268 Sum_probs=135.6
Q ss_pred CCceeEeccCC-CCCCCCCCCCCccccc-CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHH
Q psy2383 15 PPLSLYIHFPW-CIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLK 92 (391)
Q Consensus 15 ~~~~lYihiPf-C~~~C~yC~~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~ 92 (391)
.|+.+++.|-. |+.+|.||.......+ ......+.+..+++|+... ++..|.|+||.|.+ .+ ++.++++
T Consensus 5 ~P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~-------g~~~v~~~GGEPll-~~-~~~~ii~ 75 (358)
T TIGR02109 5 PPLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAEL-------GVLQLHFSGGEPLA-RP-DLVELVA 75 (358)
T ss_pred CCcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhc-------CCcEEEEeCccccc-cc-cHHHHHH
Confidence 57888998876 9999999975432211 1112233445566666432 46789999999986 44 4778888
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhh-cccce
Q psy2383 93 NIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQY-FNNFN 170 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~-~~~~~~~~~i~~~~~~-~~~v~ 170 (391)
.+++. +..+++.+|...++++.++.|+++|+++|+|++++.++++.+++++. .+.+.+.++++.++++ +. +.
T Consensus 76 ~~~~~-----g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~-v~ 149 (358)
T TIGR02109 76 HARRL-----GLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLP-LT 149 (358)
T ss_pred HHHHc-----CCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCc-eE
Confidence 88764 24678888988899999999999999999999999999999888653 4788899999999988 65 44
Q ss_pred EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 171 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 171 ~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+.+.++.++.+++.+.++++.+++++++.+.++.
T Consensus 150 --v~~vv~~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 150 --LNFVIHRHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred --EEEEeccCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4555688999999999999999999999886544
No 86
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.58 E-value=2.2e-13 Score=130.73 Aligned_cols=191 Identities=13% Similarity=0.189 Sum_probs=140.8
Q ss_pred CCCCCCCCCCCCCcccccC--cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKK--NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 101 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~ 101 (391)
.-|+.+|.||.-....+.. .....+.++.+++.|+. ...+..|.|+||.|.+++.+.|.++++.+++. +
T Consensus 96 ~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~------~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i-~-- 166 (321)
T TIGR03822 96 HVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIAD------HPEIWEVILTGGDPLVLSPRRLGDIMARLAAI-D-- 166 (321)
T ss_pred CCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHh------CCCccEEEEeCCCcccCCHHHHHHHHHHHHhC-C--
Confidence 5699999999854422211 11122344555555542 23578899999999999888999999999873 2
Q ss_pred CCcEEEEee-----CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec
Q psy2383 102 KNISITLEA-----NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 102 ~~~eit~e~-----~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~ 175 (391)
....+++.+ +|..++++.++.|+++|+ .+.|++++.+++.+ .+++.++++.++++ +.-.+-..+.
T Consensus 167 ~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~vLl 237 (321)
T TIGR03822 167 HVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQSVLL 237 (321)
T ss_pred CccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEeeEe
Confidence 122344443 788899999999999995 58999999887654 37899999999999 7633434455
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
.-.+++.+++.+..+++.++++....+|.+.+.+||..++ .+.++..+++..+...+
T Consensus 238 ~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~------~~~~~~~~i~~~l~~~~ 294 (321)
T TIGR03822 238 RGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFR------VTIEEGQALVRALRGRI 294 (321)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCccccc------CcHHHHHHHHHHHHHhC
Confidence 4469999999999999999999999999999999986543 23456666666665554
No 87
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.57 E-value=7.3e-13 Score=121.93 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=145.8
Q ss_pred CCceeEeccCC------CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC-----
Q psy2383 15 PPLSLYIHFPW------CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS----- 83 (391)
Q Consensus 15 ~~~~lYihiPf------C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~----- 83 (391)
+.-+|++-.|= |...|.+|+++..........+.++..+.+.+........ ..+-.||-.| |+|+
T Consensus 44 ~~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~-~~~vkIFTSG---SFLD~~EVP 119 (358)
T COG1244 44 PGKSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFD-EFVVKIFTSG---SFLDPEEVP 119 (358)
T ss_pred cCceEEEEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCC-CceEEEEccc---ccCChhhCC
Confidence 33467776664 5556999998877333344456666666666654432211 1234455444 4554
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CC-CEEEEecCCCCHHHH-HHhCCCCCHHHHHHHH
Q psy2383 84 DTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GI-NRLSIGIQSFNNKYL-NILGRTHDSKQAKYAI 159 (391)
Q Consensus 84 ~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv-~risiGvqS~~~~~l-~~l~R~~~~~~~~~~i 159 (391)
++....+++.|.+. ....++.+|++|+.+++|.|+.+.+. |. ..|.||+||.||+++ ..|||+.|.+++.+|+
T Consensus 120 ~e~R~~Il~~is~~---~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~ 196 (358)
T COG1244 120 REARRYILERISEN---DNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAA 196 (358)
T ss_pred HHHHHHHHHHHhhc---cceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHH
Confidence 44556677777664 33479999999999999999999998 76 499999999999999 7999999999999999
Q ss_pred HHHHhh-cccceEeEecCCCCCCH----HHHHHHHHHHHhcCCCeEEEecccccCCCcc---cCCCCCCCC
Q psy2383 160 EIAKQY-FNNFNLDLIYALPNQTL----SELMLDLNYAIQYSPPHLSLYSLTIEPNTYF---FKYPPLSMP 222 (391)
Q Consensus 160 ~~~~~~-~~~v~~dlI~GlPgqt~----e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l---~~~~~~~~p 222 (391)
+.++++ +. +.+.|++-.|--|+ +++..+++ +.+-+.+.||+.+-++..||.+ ++...+.+|
T Consensus 197 ~~ir~~g~~-vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPP 265 (358)
T COG1244 197 EIIRNYGAK-VKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPP 265 (358)
T ss_pred HHHHHcCCc-eeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHHHHcCCCCCc
Confidence 999999 76 99999999997554 44555555 5566789999999999999964 444444555
No 88
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.55 E-value=4e-13 Score=129.97 Aligned_cols=179 Identities=16% Similarity=0.243 Sum_probs=131.3
Q ss_pred eeEecc-CCCCCCCCCCCCCccc---ccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 18 SLYIHF-PWCIKKCPYCDFHSYE---IKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 18 ~lYihi-PfC~~~C~yC~~~~~~---~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
.|.|.+ .-|+.+|.||...... ..........+..+++++. ..++..|.|.||.|.+- .++.++++.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~-------~~gi~~I~~tGGEPll~--~~l~~li~~ 88 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFV-------ALGVRKVRLTGGEPLLR--KDLEDIIAA 88 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHH-------HCCCCEEEEECCCCcCc--cCHHHHHHH
Confidence 344444 3499999999765421 1111111122223333332 12578899999999764 357788888
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
+++.. ....+++.+|...+ .+.++.|+++|+++|+++++|++++..+.+.+..+.+++.++++.++++ +..+.+.
T Consensus 89 i~~~~---~~~~i~itTNG~ll-~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~ 164 (331)
T PRK00164 89 LAALP---GIRDLALTTNGYLL-ARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVN 164 (331)
T ss_pred HHhcC---CCceEEEEcCchhH-HHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 87642 23578888887545 4678999999999999999999999999999999999999999999999 7347776
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCC
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNT 211 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT 211 (391)
+++ +||.+.+++.+.++++.++++ ++.+..+++.+..
T Consensus 165 ~vv-~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~ 201 (331)
T PRK00164 165 AVL-MKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEG 201 (331)
T ss_pred EEE-ECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCC
Confidence 644 789999999999999999987 4777777766543
No 89
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.54 E-value=5.4e-13 Score=127.45 Aligned_cols=176 Identities=17% Similarity=0.243 Sum_probs=131.5
Q ss_pred eeEeccC-CCCCCCCCCCCCccccc-CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHH
Q psy2383 18 SLYIHFP-WCIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 18 ~lYihiP-fC~~~C~yC~~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~ 95 (391)
.++|++- -|+.+|.||........ ......+.+..+++++. ..+++.|.|.||.|.+ .+ .+.++++.++
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~-------~~gi~~I~~tGGEPll-~~-~l~~iv~~l~ 81 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVAS-------EFGVRKVKITGGEPLL-RK-DLIEIIRRIK 81 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHH-------HcCCCEEEEECccccc-cc-CHHHHHHHHH
Confidence 5777775 59999999986543211 11112222333333332 2357889999999987 33 4677888887
Q ss_pred HhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe
Q psy2383 96 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI 174 (391)
Q Consensus 96 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI 174 (391)
+. ++ ..+++.+|...+ .+.++.|+++|+++|+++++|.+++..+.+.+..+.+++.++++.++++ +..+.+.++
T Consensus 82 ~~-g~---~~v~i~TNG~ll-~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v 156 (302)
T TIGR02668 82 DY-GI---KDVSMTTNGILL-EKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMV 156 (302)
T ss_pred hC-CC---ceEEEEcCchHH-HHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64 22 278888887544 6788999999999999999999999999999989999999999999999 654777655
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC
Q psy2383 175 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 175 ~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
+ +||++.+++.+.++++.+++++ +.+..+++..
T Consensus 157 ~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~ 189 (302)
T TIGR02668 157 V-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPG 189 (302)
T ss_pred E-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECC
Confidence 4 6999999999999999999985 6666666543
No 90
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.53 E-value=2.8e-13 Score=129.44 Aligned_cols=186 Identities=16% Similarity=0.257 Sum_probs=140.1
Q ss_pred CCCC----CCCCCCCcccccCcccHHHHHHHHHHHHHhccC----ccc-CCCeeEEEEeC----CCCCCCCHHHHHHHHH
Q psy2383 26 CIKK----CPYCDFHSYEIKKNISEKKYLEALLIDVELSLP----IIL-NRKIHTIFIGG----GTPSLISDTGLDYLLK 92 (391)
Q Consensus 26 C~~~----C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~----~~~-~~~~~~i~~gG----Gtps~l~~~~l~~ll~ 92 (391)
|+.. |+||.-+.. + .+..|..+++++|++.+-+ ++. +++.+.+-+++ |+.---+++.+++|+.
T Consensus 193 C~r~~~ggCSFCtEp~~-g---~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~ 268 (560)
T COG1031 193 CPRRVSGGCSFCTEPVR-G---RPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFR 268 (560)
T ss_pred CcccccCCCccccCcCc-C---CcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCHHHHHHHHH
Confidence 8887 999986655 2 2345678899999987532 222 33344444443 3222347899999999
Q ss_pred HHHHhCCCCCCcEEEEe-eCCCCC------CHHHHHHhHHCCC--CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy2383 93 NIKKLLLFKKNISITLE-ANPSTF------EIEKFHSYSIIGI--NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 163 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e-~~p~~l------~~e~l~~l~~~Gv--~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~ 163 (391)
.|+...+- ...+.+. +||.++ +.+.++.+.+.|- |-..||+||+||+|.++-+-..|+|++.+|++.+.
T Consensus 269 Gir~~AP~--l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~ivn 346 (560)
T COG1031 269 GIRNVAPN--LKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIVN 346 (560)
T ss_pred HHHhhCCC--CeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHHHHHHHHH
Confidence 99986431 1234443 588887 5678888888874 78999999999999999999999999999999998
Q ss_pred hh-c-cc--------ceEeEecCCCCCCHHHHHHHHHHHHhc-----CCCeEEEecccccCCCcccCCC
Q psy2383 164 QY-F-NN--------FNLDLIYALPNQTLSELMLDLNYAIQY-----SPPHLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 164 ~~-~-~~--------v~~dlI~GlPgqt~e~~~~~l~~~~~l-----~~~~is~y~l~~~pgT~l~~~~ 217 (391)
+. - .. ..+.||+||||||.+.++-+.+++.++ -+.+|.+-+..++|||+++...
T Consensus 347 ~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~ 415 (560)
T COG1031 347 EVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERG 415 (560)
T ss_pred HhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhhh
Confidence 86 3 11 358899999999999999887777653 3788999999999999998653
No 91
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.53 E-value=1.1e-12 Score=127.16 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=131.4
Q ss_pred eEecc-CCCCCCCCCCCCCc-cc---ccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 19 LYIHF-PWCIKKCPYCDFHS-YE---IKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 19 lYihi-PfC~~~C~yC~~~~-~~---~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
|.|.| .-|+.+|.||.... .. ........+.+..+++++. ..+++.|.|.||.|.+- + .+.++++.
T Consensus 12 l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~-------~~gv~~V~ltGGEPll~-~-~l~~li~~ 82 (334)
T TIGR02666 12 LRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFV-------GLGVRKVRLTGGEPLLR-K-DLVELVAR 82 (334)
T ss_pred EEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHH-------HCCCCEEEEECcccccc-C-CHHHHHHH
Confidence 44444 35999999998654 11 1111122223333444432 22478999999999763 3 57788888
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhh-cccceE
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQY-FNNFNL 171 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R-~~~~~~~~~~i~~~~~~-~~~v~~ 171 (391)
+++..++ ..+++.+|+..+ .+.++.|+++|+++|+|+++|++++..+.+.+ ..+.+++.++++.++++ +..+.+
T Consensus 83 i~~~~gi---~~v~itTNG~ll-~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~i 158 (334)
T TIGR02666 83 LAALPGI---EDIALTTNGLLL-ARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKL 158 (334)
T ss_pred HHhcCCC---CeEEEEeCchhH-HHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 7764222 278888887544 56899999999999999999999999999985 67999999999999999 754666
Q ss_pred eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCc
Q psy2383 172 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTY 212 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 212 (391)
.+++ +||.+.+++.+.++++.+++++ +.+..++|..++.
T Consensus 159 n~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~ 197 (334)
T TIGR02666 159 NTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGN 197 (334)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCc
Confidence 6543 5899999999999999999985 7777788776553
No 92
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.50 E-value=7.3e-13 Score=140.47 Aligned_cols=215 Identities=12% Similarity=0.153 Sum_probs=150.5
Q ss_pred ccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhC
Q psy2383 22 HFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 98 (391)
Q Consensus 22 hiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~ 98 (391)
+|.| |+.+|.||+|...... ........+.++++++.. ...++..|.+.||...-++.+.+.++++.|++.+
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~-~~~y~Ls~eeI~~~a~ea----~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~ 603 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTD-ADAYTLSLDEVADRAWEA----WVAGATEVCMQGGIHPELPGTGYADLVRAVKARV 603 (843)
T ss_pred ceecCCCCCCCCcccccccCCCC-CCcccCCHHHHHHHHHHH----HHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhC
Confidence 5554 9999999999876422 111112344555555433 2345777777666533467888899999999875
Q ss_pred CCCCCcEEEEe---------eCCCCCCHHHHHHhHHCCCCEEEE-ecCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhh-c
Q psy2383 99 LFKKNISITLE---------ANPSTFEIEKFHSYSIIGINRLSI-GIQSFNNKYLNILGR-THDSKQAKYAIEIAKQY-F 166 (391)
Q Consensus 99 ~~~~~~eit~e---------~~p~~l~~e~l~~l~~~Gv~risi-GvqS~~~~~l~~l~R-~~~~~~~~~~i~~~~~~-~ 166 (391)
+ ++.|... ..-+..++|.++.|+++|++++.- |-+-+++++.+.+.+ ..+.++..++++.++++ +
T Consensus 604 p---~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi 680 (843)
T PRK09234 604 P---SMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGL 680 (843)
T ss_pred C---CeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 2333211 112334689999999999999976 677889989888875 45888889999999999 8
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc----cCCCcccCCC-CCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI----EPNTYFFKYP-PLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~----~pgT~l~~~~-~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
+ ++..+|||+ +||.+++.+.+..+.+++.+...+..+.| .|+||++... ....++..+..++...++-+|..
T Consensus 681 ~-~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~- 757 (843)
T PRK09234 681 R-SSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHG- 757 (843)
T ss_pred C-cccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCC-
Confidence 7 999999997 79999999999999999988666666665 5688875321 11346777777777666555532
Q ss_pred CCceec
Q psy2383 242 YYKNYE 247 (391)
Q Consensus 242 Gy~~ye 247 (391)
.+.++.
T Consensus 758 ~i~~Iq 763 (843)
T PRK09234 758 RIDNIQ 763 (843)
T ss_pred Cccccc
Confidence 244443
No 93
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.49 E-value=2.3e-12 Score=126.03 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=130.9
Q ss_pred eEecc-CCCCCCCCCCCCCccccc---CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 19 LYIHF-PWCIKKCPYCDFHSYEIK---KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 19 lYihi-PfC~~~C~yC~~~~~~~~---~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
|-|+| .-|+.+|.||........ ........+..+++++ ...+++.|.|.||.|++ .+ .+.++++.+
T Consensus 60 lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~-------~~~Gv~~I~~tGGEPll-r~-dl~eli~~l 130 (373)
T PLN02951 60 LRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLF-------VAAGVDKIRLTGGEPTL-RK-DIEDICLQL 130 (373)
T ss_pred EEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHH-------HHCCCCEEEEECCCCcc-hh-hHHHHHHHH
Confidence 33444 349999999975432110 0111111222222222 22357889999999986 33 588888888
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
++..++ ..+++.+|...++ +.++.|+++|+++|++.++|.+++..+.+.|....+.+.++++.++++ +..+.+.+
T Consensus 131 ~~~~gi---~~i~itTNG~lL~-~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~ 206 (373)
T PLN02951 131 SSLKGL---KTLAMTTNGITLS-RKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNC 206 (373)
T ss_pred HhcCCC---ceEEEeeCcchHH-HHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 765332 2578888876555 668999999999999999999999999998888889999999999998 64466654
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCccc
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF 214 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 214 (391)
+ -+||.+.+++.+.++++.+.++ .+.+..++|..+++..
T Consensus 207 v-v~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~ 245 (373)
T PLN02951 207 V-VMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWN 245 (373)
T ss_pred E-ecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccc
Confidence 3 4679999999999999999886 4888888888887543
No 94
>PTZ00413 lipoate synthase; Provisional
Probab=99.46 E-value=1.6e-11 Score=117.05 Aligned_cols=214 Identities=12% Similarity=0.122 Sum_probs=138.6
Q ss_pred ceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCH---HHHHHHHHH
Q psy2383 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISD---TGLDYLLKN 93 (391)
Q Consensus 17 ~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~---~~l~~ll~~ 93 (391)
...-|-=.-|+..|.||+...... ....-...+..+.+.+. ..+++.+.+..|+=.-|+. +.+.+.++.
T Consensus 150 ATfmilG~~CTr~C~FCaqstg~~-p~~lD~eEp~~vA~av~-------~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~ 221 (398)
T PTZ00413 150 ATIMVMGDHCTRGCRFCSVKTSRK-PPPLDPNEPEKVAKAVA-------EMGVDYIVMTMVDRDDLPDGGASHVARCVEL 221 (398)
T ss_pred eEeeecCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHH-------HcCCCEEEEEEEcCCCCChhhHHHHHHHHHH
Confidence 334444456999999999876431 11111222222222222 2234455555444212233 345555555
Q ss_pred HHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhhc-c--
Q psy2383 94 IKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQYF-N-- 167 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R-~~~~~~~~~~i~~~~~~~-~-- 167 (391)
|++. . ..+.+|+....+ +.+.++.|+++|++++.-++|| .++....+.. .++.++..++++.++++| .
T Consensus 222 Ir~~---~--p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi 295 (398)
T PTZ00413 222 IKES---N--PELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAM 295 (398)
T ss_pred HHcc---C--CCCeEEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCc
Confidence 5543 1 246778764445 8999999999999999999999 9999999985 689999999999999862 2
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc-ccCC-CcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT-IEPN-TYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~-~~pg-T~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
.++..+|+|| |||.+++.+++..+.+++++.+++-++. |-+. -|..+. ..| +.+++| .+.-.+.||.+
T Consensus 296 ~tcSGiIVGL-GET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~y---v~P---~~F~~~---~~~a~~~Gf~~ 365 (398)
T PTZ00413 296 LTKSSIMLGL-GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRY---AHP---KEFEMW---EEEAMKMGFLY 365 (398)
T ss_pred eEeeeeEecC-CCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceec---cCH---HHHHHH---HHHHHHcCCce
Confidence 2566999995 9999999999999999999999986643 3221 111111 112 334444 34455789987
Q ss_pred ecccccccC
Q psy2383 246 YEISAYSKT 254 (391)
Q Consensus 246 ye~~~fa~~ 254 (391)
..-.-+.|.
T Consensus 366 v~sgPlVRS 374 (398)
T PTZ00413 366 CASGPLVRS 374 (398)
T ss_pred EEecCcccc
Confidence 755545543
No 95
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.44 E-value=1.2e-12 Score=138.80 Aligned_cols=201 Identities=13% Similarity=0.168 Sum_probs=143.1
Q ss_pred eccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCC-CCCCC--------------
Q psy2383 21 IHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG-TPSLI-------------- 82 (391)
Q Consensus 21 ihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGG-tps~l-------------- 82 (391)
++||+ |..+|.||+|........ ...-..+.+++.++.. ...++..+.|.+| .|..-
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~-~~~ls~eEIl~~a~~~----~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~ 147 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLE-AAYLSPDEVLDIARAG----AAAGCKEALFTLGDRPEDRWPEAREWLDERGYD 147 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCc-cccCCHHHHHHHHHHH----HHCCCCEEEEecCCCCccccccccccccccccc
Confidence 57887 999999999986543211 0011223444444332 2234455555554 46531
Q ss_pred -CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC------CHHHH
Q psy2383 83 -SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH------DSKQA 155 (391)
Q Consensus 83 -~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~------~~~~~ 155 (391)
..+++.++++.+++..++. ..+++..+|.+.++.|+++|++ ..+-++|.+++..+..+-.| +.++-
T Consensus 148 ~~~ey~~~~~~~ik~~~gl~------p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 148 STLDYVRAMAIRVLEETGLL------PHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred cHHHHHHHHHHHHHHhcCCC------ceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 1366777777777654432 2355678999999999999996 56778888888765443333 57778
Q ss_pred HHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhc-----CCCeEEEecccccCCCcccCCCCCCCCCHHHHHH
Q psy2383 156 KYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQY-----SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAV 229 (391)
Q Consensus 156 ~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l-----~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~ 229 (391)
.++++.++++ ++ ++..+|+|+ |||.++..+.+..+.++ ++..+-+.+|.+.|||+|.... .++.++..+
T Consensus 221 L~ti~~A~~lGi~-~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~---~~s~~e~Lr 295 (843)
T PRK09234 221 LRVLEDAGRLSVP-FTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVP---DAGLEELLA 295 (843)
T ss_pred HHHHHHHHHcCCC-ccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCC---CCCHHHHHH
Confidence 8999999999 98 999999999 99999999999999998 5677888899999999997554 367777777
Q ss_pred HHHHHHHHH
Q psy2383 230 MQDKITSLL 238 (391)
Q Consensus 230 ~~~~~~~~L 238 (391)
+...++-+|
T Consensus 296 ~iAvaRliL 304 (843)
T PRK09234 296 TIAVARLVL 304 (843)
T ss_pred HHHHHHHhC
Confidence 776666555
No 96
>KOG2492|consensus
Probab=99.42 E-value=6.2e-12 Score=118.52 Aligned_cols=210 Identities=13% Similarity=0.215 Sum_probs=156.1
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCc-cc-----CCCe------eEEEEeCCCCCCCC
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPI-IL-----NRKI------HTIFIGGGTPSLIS 83 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~-~~-----~~~~------~~i~~gGGtps~l~ 83 (391)
.+.+|.|-- |..-|+||-.+-..++ .+.|.++.+++|+..+... ++ +..| ..+-|.+..|+.+.
T Consensus 220 ~tAFvSiMRGCdNMCtyCiVpftrGr---eRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~ 296 (552)
T KOG2492|consen 220 TTAFVSIMRGCDNMCTYCIVPFTRGR---ERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLS 296 (552)
T ss_pred chhHHHHHhccccccceEEEeccCCc---ccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccC
Confidence 345566654 9999999987655543 3567888899988765321 00 1111 11122222222221
Q ss_pred H------------HHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCC
Q psy2383 84 D------------TGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGR 148 (391)
Q Consensus 84 ~------------~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R 148 (391)
+ -.++.|++.+.+. .|.+.|.+.. +|.++.+|.|+++++.. ++-+.+-+||.|.++|+.|.|
T Consensus 297 ~GFst~yK~K~gGl~Fa~LLd~vs~~---~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrR 373 (552)
T KOG2492|consen 297 PGFSTVYKPKQGGLRFAHLLDQVSRA---DPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRR 373 (552)
T ss_pred CCceeeecccCCCccHHHHHHHHhhh---CcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHc
Confidence 1 1367778877765 4567888876 89999999999999975 678999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcc--cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHH
Q psy2383 149 THDSKQAKYAIEIAKQYFN--NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDE 226 (391)
Q Consensus 149 ~~~~~~~~~~i~~~~~~~~--~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~ 226 (391)
+++.+...+.++.+++.++ ..+.|+|.|+-|+|.++..+++..+.+.+-+-+-+|++....+|..+.......|.+-.
T Consensus 374 gysreayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVK 453 (552)
T KOG2492|consen 374 GYSREAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVK 453 (552)
T ss_pred cCChHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHH
Confidence 9999999999999999944 46799999999999999999999999999999999999999999887765445565544
Q ss_pred HHHHHH
Q psy2383 227 NAVMQD 232 (391)
Q Consensus 227 ~~~~~~ 232 (391)
..+.+.
T Consensus 454 nrrl~~ 459 (552)
T KOG2492|consen 454 NRRLFE 459 (552)
T ss_pred HHHHHH
Confidence 444443
No 97
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.41 E-value=1.1e-11 Score=116.56 Aligned_cols=172 Identities=15% Similarity=0.260 Sum_probs=132.0
Q ss_pred CCCCCCCCCCCCCc-ccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy2383 24 PWCIKKCPYCDFHS-YEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 102 (391)
Q Consensus 24 PfC~~~C~yC~~~~-~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~ 102 (391)
.=|+++|.||..-. ..... ...++ -.+||....+.+...+++.|-+.||.|.+ ..++.+|+..+.+. .
T Consensus 19 drCNfrC~YCm~eg~~~~~~---~~~~L--s~eei~~~~~~~~~~Gv~kvRlTGGEPll--R~dl~eIi~~l~~~-~--- 87 (322)
T COG2896 19 DRCNFRCTYCMPEGPLAFLP---KEELL--SLEEIRRLVRAFAELGVEKVRLTGGEPLL--RKDLDEIIARLARL-G--- 87 (322)
T ss_pred cCcCCcccccCCCCCcccCc---ccccC--CHHHHHHHHHHHHHcCcceEEEeCCCchh--hcCHHHHHHHHhhc-c---
Confidence 34999999998654 11111 11111 03455544443334579999999999987 66789999998876 3
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
..++++.+|. .+-+...+.|+++|++||.+.+.|.|++..+++.+....+++.+.++.|.++ +.-|.++.++ ++|-+
T Consensus 88 ~~~islTTNG-~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv-~kgvN 165 (322)
T COG2896 88 IRDLSLTTNG-VLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL-MKGVN 165 (322)
T ss_pred cceEEEecch-hhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE-ecCCC
Confidence 3578888886 4567799999999999999999999999999999888899999999999999 6436666554 57889
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccccC
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
.+++.+-++++.+.++ .+.+--+++..
T Consensus 166 d~ei~~l~e~~~~~~~-~lrfIE~m~~g 192 (322)
T COG2896 166 DDEIEDLLEFAKERGA-QLRFIELMPLG 192 (322)
T ss_pred HHHHHHHHHHHhhcCC-ceEEEEEeecC
Confidence 9999999999999998 46666666543
No 98
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.40 E-value=6.2e-11 Score=109.07 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=122.1
Q ss_pred EeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCC
Q psy2383 20 YIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 99 (391)
Q Consensus 20 YihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~ 99 (391)
-|-..-|+.+|.||.......... .....++.++++++.....+. .....|.|.||.|++ .++.+.++++.+++.
T Consensus 19 ~v~~~gCnl~C~~C~~~~~~~~~~-~~~~s~e~i~~~i~~~~~~~~-~~~~~I~~~GGEPll-~~~~~~~li~~~~~~-- 93 (235)
T TIGR02493 19 VVFMQGCPLRCQYCHNPDTWDLKG-GTEVTPEELIKEVGSYKDFFK-ASGGGVTFSGGEPLL-QPEFLSELFKACKEL-- 93 (235)
T ss_pred EEEECCCCCcCCCCCChhhccCCC-CEECCHHHHHHHHHHhHHHHh-cCCCeEEEeCccccc-CHHHHHHHHHHHHHC--
Confidence 366778999999997543221110 011234556666655432221 113568899999986 677788999988874
Q ss_pred CCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC
Q psy2383 100 FKKNISITLEANPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL 177 (391)
Q Consensus 100 ~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl 177 (391)
+..+++.+|.... ..+.++.+.+ .++.+++++++.+++..+++.+. +.+.+.++++.+++. ++ +.+-.++ .
T Consensus 94 ---g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~-~~v~~vv-~ 166 (235)
T TIGR02493 94 ---GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKP-IWIRYVL-V 166 (235)
T ss_pred ---CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCc-EEEEEee-e
Confidence 2457888887322 1445555544 46789999999999999888655 788899999999998 65 6665555 4
Q ss_pred CC--CCHHHHHHHHHHHHhcC-CCeEEEecccc
Q psy2383 178 PN--QTLSELMLDLNYAIQYS-PPHLSLYSLTI 207 (391)
Q Consensus 178 Pg--qt~e~~~~~l~~~~~l~-~~~is~y~l~~ 207 (391)
|+ ++.+++.+.++++.+++ +..+.+-++.+
T Consensus 167 ~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~ 199 (235)
T TIGR02493 167 PGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQ 199 (235)
T ss_pred CCcCCCHHHHHHHHHHHHhCCCCceEEecCCCc
Confidence 76 57899999999999999 56777766664
No 99
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.40 E-value=4.6e-11 Score=119.14 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=137.7
Q ss_pred EeccC---CCCCCCCCCCCCccc---ccCc-ccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHHHHH
Q psy2383 20 YIHFP---WCIKKCPYCDFHSYE---IKKN-ISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLL 91 (391)
Q Consensus 20 YihiP---fC~~~C~yC~~~~~~---~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll 91 (391)
=+|+| -|+.+|.||.-.... .+.. ....-..+.+++.++.....+. .+..|.|.| |.|.+ +++...+++
T Consensus 25 r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl-~~e~~~~~l 101 (442)
T TIGR01290 25 RMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLA-NIGKTFQTL 101 (442)
T ss_pred EEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCccc-CccccHHHH
Confidence 36665 499999999843210 0000 0001122334444443322221 356688888 99987 455556666
Q ss_pred HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHh-------CCCCC--------HHHHH
Q psy2383 92 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL-------GRTHD--------SKQAK 156 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-------~R~~~--------~~~~~ 156 (391)
..+++.+ ++..+++++|.- +.++.++.|.++|++.|.+.+-++|+++.+++ ||..+ .+.+.
T Consensus 102 ~~~~~~~---~~i~i~lsTNG~-~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l 177 (442)
T TIGR01290 102 ELVARQL---PDVKLCLSTNGL-MLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQL 177 (442)
T ss_pred HHHHHhc---CCCeEEEECCCC-CCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHH
Confidence 7777653 246889999884 45889999999999999999999999999876 33222 34456
Q ss_pred HHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC--CCcccCCCCCCCCCHHHHHHHHHH
Q psy2383 157 YAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP--NTYFFKYPPLSMPSNDENAVMQDK 233 (391)
Q Consensus 157 ~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p--gT~l~~~~~~~~p~~~~~~~~~~~ 233 (391)
+.++.+.+. +. +.+..++ +||.+.+++.+..+++.+++++.+.+.++.+.| |+++.... ...|+.++..++.+.
T Consensus 178 ~~l~~l~~~G~~-v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~-~~~ps~e~l~~~~~~ 254 (442)
T TIGR01290 178 EGLEKLTERGIL-VKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNG-QREPDPDELAALRDR 254 (442)
T ss_pred HHHHHHHhCCCe-EEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCC-CCCcCHHHHHHHHHH
Confidence 778888777 54 5554433 588899999999999999999888999998877 88764221 245777666555544
Q ss_pred HHH
Q psy2383 234 ITS 236 (391)
Q Consensus 234 ~~~ 236 (391)
...
T Consensus 255 ~~~ 257 (442)
T TIGR01290 255 LEM 257 (442)
T ss_pred HHh
Confidence 433
No 100
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.37 E-value=2.3e-11 Score=117.81 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=148.4
Q ss_pred CCceeEeccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHH
Q psy2383 15 PPLSLYIHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLL 91 (391)
Q Consensus 15 ~~~~lYihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll 91 (391)
-.++++++|++ |..+|+||+|+..... +....-..+.+.++++... ..+++.|.|.||.---++.+..++++
T Consensus 55 vtyv~n~~in~TN~C~~~C~fCaF~~~~~~-~~~y~Ls~eeI~~~~~~~~----~~G~~Evli~gG~~p~~~~~y~~~~~ 129 (370)
T COG1060 55 VTYVVNRNINYTNICVNDCTFCAFYRKPGD-PKAYTLSPEEILEEVREAV----KRGITEVLIVGGEHPELSLEYYEELF 129 (370)
T ss_pred EEEEEeecCCcchhhcCCCCccccccCCCC-ccccccCHHHHHHHHHHHH----HcCCeEEEEecCcCCCcchHHHHHHH
Confidence 34688999998 9999999999987622 1111112345555555432 33688888888776566778999999
Q ss_pred HHHHHhCCCC-----CCcEEEEeeCCCCCC-HHHHHHhHHCCCCEEEEe-cCCCCHHHHHHhC-CCCCHHHHHHHHHHHH
Q psy2383 92 KNIKKLLLFK-----KNISITLEANPSTFE-IEKFHSYSIIGINRLSIG-IQSFNNKYLNILG-RTHDSKQAKYAIEIAK 163 (391)
Q Consensus 92 ~~i~~~~~~~-----~~~eit~e~~p~~l~-~e~l~~l~~~Gv~risiG-vqS~~~~~l~~l~-R~~~~~~~~~~i~~~~ 163 (391)
+.|++.|+-- ...||..-+++..++ +|.++.|+++|++.+-.| -+=+++++++.+. .+.+++...++++.|.
T Consensus 130 ~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah 209 (370)
T COG1060 130 RTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH 209 (370)
T ss_pred HHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 9999866510 012233333455555 566999999999987754 4556777776665 4469999999999999
Q ss_pred hh-cccceEeEecCCCCCCHHHHHHHHHHHHhcC-----CCeEEEecccccCCC-cccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 164 QY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNT-YFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 164 ~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~-----~~~is~y~l~~~pgT-~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
++ ++ .+.-+++|. ++|.++....+..+.+++ +..+++-++.|.+++ +... ...++..+...++..++-
T Consensus 210 ~lGI~-~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~---~~~~~~~~~l~~iAiaRi 284 (370)
T COG1060 210 RLGIP-TTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEV---VPEASLEQDLKAIALARI 284 (370)
T ss_pred HcCCC-ccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccC---CCCCCHHHHHHHHHHHHH
Confidence 99 98 556688887 899999999999999874 444555556666665 2211 134666777777777666
Q ss_pred HHH
Q psy2383 237 LLK 239 (391)
Q Consensus 237 ~L~ 239 (391)
+|.
T Consensus 285 ~l~ 287 (370)
T COG1060 285 FLD 287 (370)
T ss_pred Hcc
Confidence 653
No 101
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.35 E-value=8.8e-11 Score=112.72 Aligned_cols=202 Identities=15% Similarity=0.158 Sum_probs=137.4
Q ss_pred CCCceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHH
Q psy2383 14 LPPLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLK 92 (391)
Q Consensus 14 ~~~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~ 92 (391)
.-|+.|.+.+-+ |+.+|.||........ .....-.++.+++.++. .++..|.|.||.|.+- + ++.++++
T Consensus 25 ~~Pl~l~le~T~~CNL~C~~C~~~~~~~~-~~~~~ls~ee~~~~i~e-------~g~~~V~i~GGEPLL~-p-dl~eiv~ 94 (318)
T TIGR03470 25 RFPLVLMLEPLFRCNLACAGCGKIQYPAE-ILKQRLSVEECLRAVDE-------CGAPVVSIPGGEPLLH-P-EIDEIVR 94 (318)
T ss_pred CCCCEEEEecccccCcCCcCCCCCcCCCc-ccccCCCHHHHHHHHHH-------cCCCEEEEeCcccccc-c-cHHHHHH
Confidence 347777777766 9999999986543311 00001122223333332 2356788999999873 4 4788888
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE
Q psy2383 93 NIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL 171 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~ 171 (391)
.+++. +..+++.+|...++ +.++.++.+|...|++.+++..+..-+..++..+.+.+.++++.++++ +. +.+
T Consensus 95 ~~~~~-----g~~v~l~TNG~ll~-~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~-v~v 167 (318)
T TIGR03470 95 GLVAR-----KKFVYLCTNALLLE-KKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFR-VTT 167 (318)
T ss_pred HHHHc-----CCeEEEecCceehH-HHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCc-EEE
Confidence 88764 24688999987665 457889999999999999987644444446778999999999999998 65 665
Q ss_pred eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 172 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
...+ +++++.+++.+.++++.++|++.+.+.+..+...++- .. ...+.++..+.+..+.+.
T Consensus 168 ~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~---~~-~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 168 NTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPD---QD-HFLGRRQTKKLFREVLSN 228 (318)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCcccccccc---cc-cccCHHHHHHHHHHHHhh
Confidence 4432 3689999999999999999999988766544322221 11 234555666666655443
No 102
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=110.79 Aligned_cols=163 Identities=18% Similarity=0.266 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCcccccCcccHHHH---HHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKY---LEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 102 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y---~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~ 102 (391)
|..+|-||+....+..+. ....| .+.|++..+..++ +++.+++.-.=|=|.|++.+ .+.++++++++.- .
T Consensus 117 CnlnCIfCSVdeGp~Srt-R~~dy~Vd~eyLl~w~~kVa~-~KgkglEaHlDGqGEP~lYP--~l~~lVqalk~~~---~ 189 (414)
T COG2100 117 CNLNCIFCSVDEGPYSRT-RKLDYVVDPEYLLEWFEKVAR-FKGKGLEAHLDGQGEPLLYP--HLVDLVQALKEHK---G 189 (414)
T ss_pred ccceeEEEeccCCcccce-eccceEecHHHHHHHHHHHHh-hhCCCeEEEecCCCCCccch--hHHHHHHHHhcCC---C
Confidence 999999999766554321 11122 3556666665543 35667888888889998865 6899999998863 3
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHh-CC-CCCHHHHHHHHHHHHhh-cccceEeEecCCCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL-GR-THDSKQAKYAIEIAKQY-FNNFNLDLIYALPN 179 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-~R-~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg 179 (391)
..-+++++|...+|+++++.|.++|++||+++|.|.||+.-+.+ |+ -++.+.+.+.++.+.++ ++ +-+-= +=+||
T Consensus 190 v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~id-vlIaP-v~lPG 267 (414)
T COG2100 190 VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGID-VLIAP-VWLPG 267 (414)
T ss_pred ceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCC-EEEee-eecCC
Confidence 45789999999999999999999999999999999999999877 43 46888888888888876 54 22211 23799
Q ss_pred CCHHHHHHHHHHHHhcCC
Q psy2383 180 QTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 180 qt~e~~~~~l~~~~~l~~ 197 (391)
-+.+++.+-++++.+.|.
T Consensus 268 ~ND~E~~~iIe~A~~iGa 285 (414)
T COG2100 268 VNDDEMPKIIEWAREIGA 285 (414)
T ss_pred cChHHHHHHHHHHHHhCC
Confidence 999999999999999864
No 103
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.31 E-value=8.2e-10 Score=107.30 Aligned_cols=213 Identities=14% Similarity=0.172 Sum_probs=141.4
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhc-cCcccCCCeeEEEEeC-CCCCCCCHHHHHHHHHH
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELS-LPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKN 93 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~-~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~ 93 (391)
..+-|.+-- |+.+|.||+-......+.....+.++.+.. +... .....+.++..|.|-| |.|.+ +.+.+.++++.
T Consensus 121 ~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~-~~~~~~~~~~~~~v~nIvfmGmGEPLl-n~d~v~~~i~~ 198 (368)
T PRK14456 121 MTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFA-LSDMLAERNRERGITNIVFMGMGEPLL-NTDNVFEAVLT 198 (368)
T ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHhhhccCCccEEEEeCcCcccc-CHHHHHHHHHH
Confidence 344444422 999999998654322212223334443321 1111 1111234578899999 99975 66778888888
Q ss_pred HHHh-CCCC-CCcEEEEeeCCCCCCHHHHHHhHHCCCC-EEEEecCCCCHHHHHHhC----CCCCHHHHHHHHHH-HHhh
Q psy2383 94 IKKL-LLFK-KNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNILG----RTHDSKQAKYAIEI-AKQY 165 (391)
Q Consensus 94 i~~~-~~~~-~~~eit~e~~p~~l~~e~l~~l~~~Gv~-risiGvqS~~~~~l~~l~----R~~~~~~~~~~i~~-~~~~ 165 (391)
+.+. ..+. ....+++.++. +.+ .++.|.+.|.. ++.+.+.|.+++..+++- |.++.+++.++++. +++.
T Consensus 199 l~~~~~~~~is~r~ItisT~G--l~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~ 275 (368)
T PRK14456 199 LSTRKYRFSISQRKITISTVG--ITP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKT 275 (368)
T ss_pred HhccccccCcCcCeeEEECCC--ChH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhc
Confidence 8764 2221 12478888875 554 57999999996 999999999999999883 57799999999975 4444
Q ss_pred c-c-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 166 F-N-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 166 ~-~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
. . .+++=+|-|+ .++.+++.+.++++..+. -+|.+-++++.+++++. .|+.+... ...+.|.++|+
T Consensus 276 g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~~------~ps~e~i~----~F~~~L~~~Gi 343 (368)
T PRK14456 276 GEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKFE------PVCSSTRE----RFRDRLLDAGL 343 (368)
T ss_pred CCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCCC------CCCHHHHH----HHHHHHHHCCC
Confidence 2 2 2555666665 588899999999998874 47888888888776642 35544322 33678889998
Q ss_pred cee
Q psy2383 244 KNY 246 (391)
Q Consensus 244 ~~y 246 (391)
...
T Consensus 344 ~vt 346 (368)
T PRK14456 344 QVT 346 (368)
T ss_pred cEE
Confidence 753
No 104
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.31 E-value=1.3e-09 Score=105.63 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=133.8
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcc----cCCC-eeEEEEeC-CCCCCCCHHHHHHHHHHHHHhCC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII----LNRK-IHTIFIGG-GTPSLISDTGLDYLLKNIKKLLL 99 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~----~~~~-~~~i~~gG-Gtps~l~~~~l~~ll~~i~~~~~ 99 (391)
|+.+|.||.-......... ..+.+++++......+ .+.. ++.|.|-| |.|.+ +.+.+.+.++.+++..+
T Consensus 112 C~~~C~FC~tg~~g~~rnl----t~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLl-n~~~v~~~l~~l~~~~G 186 (354)
T PRK14460 112 CAMGCTFCSTGTMGFERNM----TMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLL-NLDEVMRSLRTLNNEKG 186 (354)
T ss_pred cCCCCccCCCCCCCCCcCC----CHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccC-CHHHHHHHHHHHhhhhc
Confidence 9999999975433211111 2344555553221111 1222 66666555 99987 67777777777765433
Q ss_pred CC-CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC---CCHHHHHHHHHHHHhh-ccc--ceEe
Q psy2383 100 FK-KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT---HDSKQAKYAIEIAKQY-FNN--FNLD 172 (391)
Q Consensus 100 ~~-~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~---~~~~~~~~~i~~~~~~-~~~--v~~d 172 (391)
+. +...++++++.- .+.++.|++.|..++.+.+.|.|++..+++.+. .+.+++.++++..... ... +.+-
T Consensus 187 l~~~~r~itvsT~G~---~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~ 263 (354)
T PRK14460 187 LNFSPRRITVSTCGI---EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYL 263 (354)
T ss_pred cCCCCCeEEEECCCC---hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 31 124789888763 678899999999999999999999999998654 5777777777654332 222 4454
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+|=| ..++.+++.+..+++..+++ +|.+-++.+.+|.++ ..|+.+...+ ..+.|.++|+..
T Consensus 264 LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y------~~p~~e~v~~----f~~~l~~~Gi~v 324 (354)
T PRK14460 264 LLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY------SAPTEERILA----FEKYLWSKGITA 324 (354)
T ss_pred EECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC------CCCCHHHHHH----HHHHHHHCCCeE
Confidence 5555 47899999999999998875 799999999888764 2355544333 346788888764
No 105
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.29 E-value=6.5e-10 Score=106.60 Aligned_cols=202 Identities=12% Similarity=0.135 Sum_probs=134.0
Q ss_pred cCCCCCCCCCCCCCcccccC---cccHHHHHHHHHHHHHhc----cCcccC------------CCeeEEEEe-CCCCCCC
Q psy2383 23 FPWCIKKCPYCDFHSYEIKK---NISEKKYLEALLIDVELS----LPIILN------------RKIHTIFIG-GGTPSLI 82 (391)
Q Consensus 23 iPfC~~~C~yC~~~~~~~~~---~~~~~~y~~~l~~Ei~~~----~~~~~~------------~~~~~i~~g-GGtps~l 82 (391)
..+|+.+|.||.-+.....+ ........+.|++++... ..-+.+ ...+.+.|. +|.|++-
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~ 144 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY 144 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch
Confidence 45899999999754332210 001112345556665432 111111 123455555 6899973
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC---CCHHHHHHHH
Q psy2383 83 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT---HDSKQAKYAI 159 (391)
Q Consensus 83 ~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~---~~~~~~~~~i 159 (391)
+ .|.++++.+++. +..+.+.+|.. + ++.++.| ..+++.|.+.+.+.+++..+++.|+ .+.+.+.+.+
T Consensus 145 -p-~l~eli~~~k~~-----Gi~~~L~TNG~-~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L 214 (322)
T PRK13762 145 -P-YLPELIEEFHKR-----GFTTFLVTNGT-R-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETL 214 (322)
T ss_pred -h-hHHHHHHHHHHc-----CCCEEEECCCC-C-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHH
Confidence 4 689999988865 35778888873 3 6788888 7799999999999999999999774 5889999999
Q ss_pred HHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 160 EIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 160 ~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
+.+++. .+ +.+-+.+ +||.+..+..+.++.+.+++++.|.+-++++...+. ++......|+.++..+....+.+.
T Consensus 215 ~~l~~~~~~-~~ir~tl-v~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k-~~l~~~~~p~~eev~~~~~~l~~~ 290 (322)
T PRK13762 215 ELLPSKKTR-TVIRITL-VKGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR-NRLTRDNMPSHEEVREFAKELAEY 290 (322)
T ss_pred HHHHhCCCC-EEEEEEE-ECCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc-ccccccCCcCHHHHHHHHHHHHHh
Confidence 999987 44 3333322 466666666677888888999999998887665442 111112457777776666555444
No 106
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.27 E-value=4.9e-10 Score=103.82 Aligned_cols=214 Identities=12% Similarity=0.095 Sum_probs=139.4
Q ss_pred CCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 15 ~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
+.+..-|....|+.+|.||......... ......++.+++++......+. .....|.|+||.|++ .++.+.++++.+
T Consensus 19 ~g~~~~~f~~gCnl~C~~C~~~~~~~~~-~~~~lt~eei~~~i~~~~~~~~-~~~~~V~~sGGEPll-~~~~~~~l~~~~ 95 (246)
T PRK11145 19 PGIRFITFFQGCLMRCLYCHNRDTWDTH-GGKEVTVEELMKEVVTYRHFMN-ASGGGVTASGGEAIL-QAEFVRDWFRAC 95 (246)
T ss_pred CCeEEEEEECCCCCcCCCCCCHHHCCCC-CCeEcCHHHHHHHHHHhHHHHh-cCCCeEEEeCccHhc-CHHHHHHHHHHH
Confidence 4455557788899999999854321110 0111234556666654322111 113468899999975 777788899998
Q ss_pred HHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 95 KKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
++. +..+++++|.... ..+.++.+.+ .++.|.+++.+.+++..+.+... +.+.+.+.++.+.+. ++ +.+.
T Consensus 96 k~~-----g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~-v~i~ 167 (246)
T PRK11145 96 KKE-----GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQK-TWIR 167 (246)
T ss_pred HHc-----CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCc-EEEE
Confidence 863 2467888877433 3577777665 47899999999999988888543 556788888888887 54 6665
Q ss_pred EecCCCCC--CHHHHHHHHHHHHhcC-CCeEEEecccccCCCccc------CCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 173 LIYALPNQ--TLSELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFF------KYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 173 lI~GlPgq--t~e~~~~~l~~~~~l~-~~~is~y~l~~~pgT~l~------~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.++. ||. +.+++++.++++.+++ +.++.+-++.+.++.+.. +......|+.++.. .+.+.+.+.|.
T Consensus 168 ~~li-~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~----~~~~~~~~~g~ 242 (246)
T PRK11145 168 YVVV-PGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETME----RVKGILEQYGH 242 (246)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHH----HHHHHHHHcCC
Confidence 5553 665 4568999999998886 578888888776654321 11112345554432 34566777775
Q ss_pred c
Q psy2383 244 K 244 (391)
Q Consensus 244 ~ 244 (391)
.
T Consensus 243 ~ 243 (246)
T PRK11145 243 K 243 (246)
T ss_pred c
Confidence 4
No 107
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.25 E-value=1.9e-09 Score=105.90 Aligned_cols=180 Identities=21% Similarity=0.246 Sum_probs=129.1
Q ss_pred CCceeEeccC--CCCCCCCCCCCCcccccC-----cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHH
Q psy2383 15 PPLSLYIHFP--WCIKKCPYCDFHSYEIKK-----NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGL 87 (391)
Q Consensus 15 ~~~~lYihiP--fC~~~C~yC~~~~~~~~~-----~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l 87 (391)
+|+++.+-.. -|+.+|.||......... .......++.+++.+.... .....|.|.||.|.+.+.+.+
T Consensus 2 ~~~~~~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~-----~~~~~i~~~GGEPll~~~~~~ 76 (370)
T PRK13758 2 PPLSLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEA-----EGHCSFAFQGGEPTLAGLEFF 76 (370)
T ss_pred CceEEEEecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhcc-----CCceEEEEECCccccCChHHH
Confidence 4788887776 599999999865432110 1123445566665543221 134578899999998766777
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC----CCCCHHHHHHHHHHHH
Q psy2383 88 DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG----RTHDSKQAKYAIEIAK 163 (391)
Q Consensus 88 ~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~----R~~~~~~~~~~i~~~~ 163 (391)
.++++.+++.-.......+++.+|...++++.++.|++.|+ .|+|.+.+. +++-+... ...+.+.+.++++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~ 154 (370)
T PRK13758 77 EELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFK 154 (370)
T ss_pred HHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHH
Confidence 88888887652111224568899998899999999999998 999999997 45555554 3468899999999999
Q ss_pred hh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 164 QY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 164 ~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
+. ++ +.+-+++. ..+.+++.+.++++.+++++.+.+.+
T Consensus 155 ~~~~~-~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 155 KYKVE-FNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred HhCCC-ceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 88 64 55555554 46778888889999999998887654
No 108
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.25 E-value=2.8e-10 Score=105.01 Aligned_cols=218 Identities=17% Similarity=0.203 Sum_probs=153.2
Q ss_pred EeccCCCCCCCCCCCCCcccccC--ccc--H----HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHH
Q psy2383 20 YIHFPWCIKKCPYCDFHSYEIKK--NIS--E----KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLL 91 (391)
Q Consensus 20 YihiPfC~~~C~yC~~~~~~~~~--~~~--~----~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll 91 (391)
-.|.|=|...|+||......... ... + ..-++.+++-+-.....+++..+.+|..+ ..++ .+..++
T Consensus 35 t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p----~~~~--d~~~i~ 108 (339)
T COG2516 35 TTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYP----RALN--DLKLIL 108 (339)
T ss_pred eecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcccccccceeeccc----cccc--hhhhhh
Confidence 34668899999999876532211 100 0 11112222222221122344456666543 2222 345555
Q ss_pred HHHHHhCCCCCCcEEEEe--eCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC----CCCHHHHHHHHHHHHhh
Q psy2383 92 KNIKKLLLFKKNISITLE--ANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR----THDSKQAKYAIEIAKQY 165 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e--~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R----~~~~~~~~~~i~~~~~~ 165 (391)
+.++... ..++|+. +++... .+.+...+++|...++++++..++++++++.| .|+.+...+.++.+.++
T Consensus 109 ~~~~~~~----~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~ 183 (339)
T COG2516 109 ERLHIRL----GDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEA 183 (339)
T ss_pred hhhhhcc----CCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 5555332 3467776 677666 88999999999999999999999999998843 47899999999999998
Q ss_pred -c-ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 166 -F-NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 166 -~-~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
. .++++.+|+|+ |+|..+|.+++..+...+. .++++.+.|..||.+.++.+ |..+...+++.+ . +|.+.|-
T Consensus 184 ~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~~---~pve~Yrk~q~a-~-yli~~G~ 256 (339)
T COG2516 184 FGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRKP---PPVERYRKIQVA-R-YLIGNGE 256 (339)
T ss_pred hccCCcceeEEecc-CCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCCC---CcHHHHHHHHHH-H-HHHhcCc
Confidence 3 57999999997 8999999999999999886 48999999999999988754 555666666543 3 8899998
Q ss_pred ceecccccccCC
Q psy2383 244 KNYEISAYSKTG 255 (391)
Q Consensus 244 ~~ye~~~fa~~g 255 (391)
..++..-|.-.|
T Consensus 257 v~~~~~~fde~g 268 (339)
T COG2516 257 VDLEDFEFDEFG 268 (339)
T ss_pred cchhhccccccc
Confidence 887776665443
No 109
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.24 E-value=7.9e-10 Score=96.81 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=152.4
Q ss_pred ceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCC--CHHHHHHHHHHH
Q psy2383 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI--SDTGLDYLLKNI 94 (391)
Q Consensus 17 ~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l--~~~~l~~ll~~i 94 (391)
.++-|-=-||..+|..|+-.-... .+.-....|+++.... ...+.+.+.+.||.-+-. +-+.+...+.++
T Consensus 12 ~sISVTG~yC~lnC~HCg~~~L~~----Mi~vt~~~l~k~~~el----~kkGy~g~llSGGm~srg~VPl~kf~d~lK~l 83 (275)
T COG1856 12 ISISVTGAYCSLNCPHCGRHYLEH----MIKVTTKSLLKRCMEL----EKKGYEGCLLSGGMDSRGKVPLWKFKDELKAL 83 (275)
T ss_pred ceEEEeccceEecChHHHHHHHHH----hcccchHHHHHHHHHH----HhcCceeEEEeCCcCCCCCccHHHHHHHHHHH
Confidence 455566679999999997322111 1111113444443322 233578888888875543 344455555555
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
++. ..+.+.++.+.++++.++.+++.+++-+|+-+=+=|+.+.+-.+-..+.++..+.++.++++ +. |--++
T Consensus 84 ke~------~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~ir-vvpHi 156 (275)
T COG1856 84 KER------TGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIR-VVPHI 156 (275)
T ss_pred HHh------hCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCce-eceeE
Confidence 554 34678888888999999999999999999998664444444556667899999999999999 75 88999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
++||-+-...-=.+.++.+.+..||.+-+--|+|.|||.|...++ |+.++....+..|++.+.
T Consensus 157 tiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~p---p~~eE~i~v~~~AR~~f~ 219 (275)
T COG1856 157 TIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPP---PPVEEAIKVVKYARKKFP 219 (275)
T ss_pred EEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCC---cCHHHHHHHHHHHHHhCC
Confidence 999988777777788999999999999999999999999987654 888899999988887764
No 110
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.24 E-value=5.6e-09 Score=103.98 Aligned_cols=183 Identities=12% Similarity=0.118 Sum_probs=132.5
Q ss_pred CCceeEecc--CCCCCCCCCCCCCcccc-----cCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHH
Q psy2383 15 PPLSLYIHF--PWCIKKCPYCDFHSYEI-----KKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGL 87 (391)
Q Consensus 15 ~~~~lYihi--PfC~~~C~yC~~~~~~~-----~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l 87 (391)
.|+++.+.. .-|+.+|.||....... .........++.+++++... .+.+.-.+.|.||.|.+.+...+
T Consensus 11 ~p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~----~~~~~v~i~f~GGEPlL~~~~~~ 86 (412)
T PRK13745 11 KPLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINS----QTMPQVLFTWHGGETLMRPLSFY 86 (412)
T ss_pred cceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHc----CCCCeEEEEEEccccCCCcHHHH
Confidence 467777773 36999999998743211 01112345556666666432 12234556778899998776677
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC----CCCHHHHHHHHHHHH
Q psy2383 88 DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR----THDSKQAKYAIEIAK 163 (391)
Q Consensus 88 ~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R----~~~~~~~~~~i~~~~ 163 (391)
+++++.+++... ...+.+++.+|...+|++.++.+++.|+ .|+|.+++. +++-+...+ ..+.+.+.++++.++
T Consensus 87 ~~~~~~~~~~~~-~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~ 163 (412)
T PRK13745 87 KKALELQKKYAR-GRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLK 163 (412)
T ss_pred HHHHHHHHHHcC-CCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHH
Confidence 888877665432 3356888999999999999999999998 999999986 455454432 358999999999999
Q ss_pred hh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 164 QY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 164 ~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
++ +. +++-..+ -.++.+...+.++++.++|++++.+.++.+
T Consensus 164 ~~gi~-~~i~~vv--~~~n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 164 KHGVE-WNAMAVV--NDFNADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HcCCC-EEEEEEE--cCCccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 98 65 5554444 467888889999999999999999988776
No 111
>KOG4355|consensus
Probab=99.21 E-value=1.4e-10 Score=108.69 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=81.6
Q ss_pred EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 130 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 130 risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
-+.+.|||.+|.+|-.|+|.+...+....++.+.+. ...|..|+|.|+|+||.+|+.++++.+.+.+.+.+-+..+.|
T Consensus 300 flhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyP 379 (547)
T KOG4355|consen 300 FLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYP 379 (547)
T ss_pred EEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCC
Confidence 356789999999999999999999999999999998 345889999999999999999999999999999999999999
Q ss_pred cCCCcccCCCC
Q psy2383 208 EPNTYFFKYPP 218 (391)
Q Consensus 208 ~pgT~l~~~~~ 218 (391)
.||||.++...
T Consensus 380 RpGTPAAkmkk 390 (547)
T KOG4355|consen 380 RPGTPAAKMKK 390 (547)
T ss_pred CCCChHHhhhc
Confidence 99999887653
No 112
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.21 E-value=8.4e-09 Score=100.17 Aligned_cols=211 Identities=15% Similarity=0.148 Sum_probs=138.6
Q ss_pred CceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc--CCCeeEE-EEeCCCCCCCCHHHHHHHH
Q psy2383 16 PLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL--NRKIHTI-FIGGGTPSLISDTGLDYLL 91 (391)
Q Consensus 16 ~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~i-~~gGGtps~l~~~~l~~ll 91 (391)
..+++|..-- |+.+|.||.-....... .-.++.++++|......+. +.++..| +.|+|.|.+ +.+.+.+++
T Consensus 108 ~~t~ciSsqvGC~~~C~FC~t~~~~~~r----~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLl-n~~~v~~~l 182 (356)
T PRK14455 108 GNSVCVTTQVGCRIGCTFCASTLGGLKR----DLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFD-NYDNVMDFL 182 (356)
T ss_pred CceEEEECCCCCCCCCCcCCCCCCCCCc----cCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccC-CHHHHHHHH
Confidence 3455555543 99999999866443221 2234455555554222221 2345555 566699975 677888888
Q ss_pred HHHHHhCCCC-CCcEEEEeeCCCCCCHHHHHHhHHCCC-CEEEEecCCCCHHHHHH---hCCCCCHHHHHHHHHHHHhh-
Q psy2383 92 KNIKKLLLFK-KNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNI---LGRTHDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 92 ~~i~~~~~~~-~~~eit~e~~p~~l~~e~l~~l~~~Gv-~risiGvqS~~~~~l~~---l~R~~~~~~~~~~i~~~~~~- 165 (391)
+.+.+..++. ....++++++.- .+ .+..+.+.++ ..+.+.+.+.|++..++ ++|+++.+++.++++.+.+.
T Consensus 183 ~~l~~~~g~~~s~r~itvsT~G~--~~-~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~ 259 (356)
T PRK14455 183 RIINDDKGLAIGARHITVSTSGI--AP-KIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKT 259 (356)
T ss_pred HHHhcccCcccCCCceEEEecCc--hH-hHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhc
Confidence 8887642221 123778887652 23 4555556554 35779999999999986 56788999999999987665
Q ss_pred cccceE-eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 166 FNNFNL-DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 166 ~~~v~~-dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
...+.+ .++++-...+.+++.+..+++..++ .+|.+-|+++.++..+. .|+.+...+ ..+.|.++|+.
T Consensus 260 ~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky~------~ps~e~l~~----f~~~L~~~gi~ 328 (356)
T PRK14455 260 NRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDYV------RTPKEDIFA----FEDTLKKNGVN 328 (356)
T ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCCc------CCCHHHHHH----HHHHHHHCCCc
Confidence 444555 4455445788899999999998887 57888899888776432 355544333 34678888876
Q ss_pred e
Q psy2383 245 N 245 (391)
Q Consensus 245 ~ 245 (391)
.
T Consensus 329 v 329 (356)
T PRK14455 329 C 329 (356)
T ss_pred E
Confidence 4
No 113
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.20 E-value=1.3e-09 Score=97.00 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=110.2
Q ss_pred EeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCC
Q psy2383 20 YIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 99 (391)
Q Consensus 20 YihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~ 99 (391)
-+..--|+.+|.||..+....... .....++.+.++++.... .++.|.|.||.|.+ .++ +..+++.+++.
T Consensus 20 ~~~t~~Cnl~C~~C~~~~~~~~~~-~~~~~~~~i~~~i~~~~~-----~~~~i~~sGGEPll-~~~-l~~li~~~~~~-- 89 (191)
T TIGR02495 20 TIFFQGCNLKCPYCHNPELIDREG-SGEIEVEFLLEFLRSRQG-----LIDGVVITGGEPTL-QAG-LPDFLRKVREL-- 89 (191)
T ss_pred EEEcCCCCCCCCCCCCccccCCCC-CCcCCHHHHHHHHHHhcC-----CCCeEEEECCcccC-cHh-HHHHHHHHHHC--
Confidence 345667999999998753321111 112234566666654311 25778899999976 454 88888888773
Q ss_pred CCCCcEEEEeeCCCCCCHHHHHHhHHCC-CCEEEEecCCCCHHHHHHhCCCCCHH-HHHHHHHHHHhh-cccceEeEecC
Q psy2383 100 FKKNISITLEANPSTFEIEKFHSYSIIG-INRLSIGIQSFNNKYLNILGRTHDSK-QAKYAIEIAKQY-FNNFNLDLIYA 176 (391)
Q Consensus 100 ~~~~~eit~e~~p~~l~~e~l~~l~~~G-v~risiGvqS~~~~~l~~l~R~~~~~-~~~~~i~~~~~~-~~~v~~dlI~G 176 (391)
+..+.+.+|.. +++.++.+.++| ++.|++++++.++...+..++..+.+ ++.++++.+++. +. +.+-.++-
T Consensus 90 ---g~~v~i~TNg~--~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~-~~i~~~v~ 163 (191)
T TIGR02495 90 ---GFEVKLDTNGS--NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIP-FELRTTVH 163 (191)
T ss_pred ---CCeEEEEeCCC--CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCC-EEEEEEEe
Confidence 34677777763 678899999998 69999999997666667778776665 899999999998 54 44443332
Q ss_pred CCCC-CHHHHHHHHHHHHhcC
Q psy2383 177 LPNQ-TLSELMLDLNYAIQYS 196 (391)
Q Consensus 177 lPgq-t~e~~~~~l~~~~~l~ 196 (391)
|+- ..+++.+.++++.+.+
T Consensus 164 -~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 164 -RGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred -CCCCCHHHHHHHHHHhccCC
Confidence 332 2567888888887776
No 114
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=99.20 E-value=3.1e-11 Score=88.19 Aligned_cols=65 Identities=23% Similarity=0.405 Sum_probs=54.8
Q ss_pred cCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHH-HHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 315 IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKI-IESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 315 l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~-~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
||+++++.|++|++||+..|+|.+.|.++||.++.. +.+.++.+++.||++.+++++++|++|++
T Consensus 1 Ls~~d~~~e~i~~~LR~~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~~l~lT~~G~l 66 (66)
T PF06969_consen 1 LSPEDRLREYIMLGLRCNEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDGGRLRLTEKGRL 66 (66)
T ss_dssp --HHHHHHHHHHHHHHHHSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-SSEEEE-TTTGG
T ss_pred CCHHHHHHHHHHHHHHhHCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeCCEEEECcccCc
Confidence 578899999999999999999999999999998755 47889999999999999999999999985
No 115
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.17 E-value=7.4e-09 Score=100.48 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=136.6
Q ss_pred CCCCceeEeccCC-CCCCCCCCCCCcccc-cCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHH
Q psy2383 13 KLPPLSLYIHFPW-CIKKCPYCDFHSYEI-KKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYL 90 (391)
Q Consensus 13 ~~~~~~lYihiPf-C~~~C~yC~~~~~~~-~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~l 90 (391)
...|..+.+.++. |+.+|.||....... ... ...+....++.++... +. +..+.|+||.|.+. ..+.++
T Consensus 15 ~~~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~e-l~~~~~~~~~~~~~~~-----g~-~~~v~~~gGEPll~--~d~~ei 85 (347)
T COG0535 15 KKPPLVVGIELTNRCNLACKHCYAEAGKKLPGE-LSTEEDLRVIDELAEL-----GE-IPVVIFTGGEPLLR--PDLLEI 85 (347)
T ss_pred ccCCcEEEEeeccccCCcCcccccccCCCCccc-cCHHHHHHHHHHHHHc-----CC-eeEEEEeCCCcccc--ccHHHH
Confidence 3357777887765 999999998666542 112 1222222344444322 12 78899999999885 467777
Q ss_pred HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHH-HHHhCCCCCHHHHHHHHHHHHhh-ccc
Q psy2383 91 LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKY-LNILGRTHDSKQAKYAIEIAKQY-FNN 168 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~-l~~l~R~~~~~~~~~~i~~~~~~-~~~ 168 (391)
++.+++. ....+++.+|...++++.++.++++|++.|++.+++.+++. ...-|+....+.+.++++.+++. +.
T Consensus 86 ~~~~~~~----~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~- 160 (347)
T COG0535 86 VEYARKK----GGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL- 160 (347)
T ss_pred HHHHhhc----CCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCe-
Confidence 7777654 23577888887567899999999999999999999999999 66667788899999999999987 54
Q ss_pred ceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC
Q psy2383 169 FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 169 v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
+-+.+.+++.+.+++.+.++.+.+++++.+.++++.+..
T Consensus 161 --~~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 161 --VVINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred --eeEEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeecc
Confidence 334445678999999999999999999989999987653
No 116
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.13 E-value=5e-09 Score=101.03 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 103 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~ 103 (391)
--|+..|.||.-..............++.+++.+.. ..++..|.|.||.|.+++.+.+..+++.+++.-. .
T Consensus 121 ~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~------~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~---~ 191 (331)
T TIGR00238 121 GGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAE------HPEIIEILISGGDPLMAKDHELEWLLKRLEEIPH---L 191 (331)
T ss_pred CCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHh------CCCcCEEEEECCccccCCHHHHHHHHHHHHhcCC---c
Confidence 349999999986433321111113344555555542 2357889999999998887779999999886422 2
Q ss_pred cEEEEee-----CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecC
Q psy2383 104 ISITLEA-----NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYA 176 (391)
Q Consensus 104 ~eit~e~-----~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~G 176 (391)
..+.+.+ .|..+|++.++.|+++|+..+.++.-...+++ .+++.++++.++++ +. .+..-++-|
T Consensus 192 ~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvLl~g 262 (331)
T TIGR00238 192 VRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVLLRG 262 (331)
T ss_pred cEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecceECC
Confidence 2344433 36668999999999999988877755444332 26788999999998 54 133445555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 177 LPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 177 lPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
. ..+.+.+.+..+.+.++++....+|.+.+.+|+.-+. .+.++..+++..+...+.
T Consensus 263 v-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~------~~~~~~~~i~~~l~~~~s 318 (331)
T TIGR00238 263 V-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFL------VPDAEAAQIVKELARLTS 318 (331)
T ss_pred c-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCccccc------CCHHHHHHHHHHHHhcCC
Confidence 4 6788889999999999999888899988888873221 345666777776666654
No 117
>KOG2535|consensus
Probab=99.12 E-value=2e-09 Score=99.86 Aligned_cols=146 Identities=24% Similarity=0.371 Sum_probs=115.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCC-----------------CCCCcEEEEeeCCCCCCHHHHHHhHHCCCCE
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL-----------------FKKNISITLEANPSTFEIEKFHSYSIIGINR 130 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~-----------------~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~r 130 (391)
+++.|.. |||+-.|+.+.-..++..++..+. ...-+-||+|++|+.--...|..|-..||+|
T Consensus 171 KVE~i~M-GGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTR 249 (554)
T KOG2535|consen 171 KVEFIVM-GGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTR 249 (554)
T ss_pred eeEEEEe-cceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeecCcccchhhhHHHHHhcCCce
Confidence 4555554 568888888765555555544321 1223579999999998888999999999999
Q ss_pred EEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHh---cCCCeEEEeccc
Q psy2383 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ---YSPPHLSLYSLT 206 (391)
Q Consensus 131 isiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~---l~~~~is~y~l~ 206 (391)
+.|||||.-++|-+-.||+||...+-+....++++ ++ |-..+|-.||.-..+--.+......+ +.+|.+.+||-.
T Consensus 250 lEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~K-vV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DGLKiYPTL 328 (554)
T KOG2535|consen 250 LEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFK-VVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDGLKIYPTL 328 (554)
T ss_pred EEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCce-eehhhCCCCCCCchhhhHHHHHHHhcCcCcCCCcceecceE
Confidence 99999999999999999999999999999999999 87 88999999998665543333333333 358999999999
Q ss_pred ccCCCcccC
Q psy2383 207 IEPNTYFFK 215 (391)
Q Consensus 207 ~~pgT~l~~ 215 (391)
+..||-+++
T Consensus 329 VIrGTGLyE 337 (554)
T KOG2535|consen 329 VIRGTGLYE 337 (554)
T ss_pred EEecccHHH
Confidence 999997654
No 118
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.12 E-value=8e-09 Score=100.71 Aligned_cols=215 Identities=16% Similarity=0.127 Sum_probs=138.7
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcE
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS 105 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~e 105 (391)
|+.+|.||.+.............-++..++-+... ..... -++.|-||.|++......+.+....++.-. .....
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~---~~~~~-v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~-~~~i~ 92 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAA---SNGDK-VTFTWQGGEPLLAGLDFYRKAVALQQKYAN-GKTIS 92 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhh---CCCCe-eEEEEECCccccchHHHHHHHHHHHHHHhc-CCeeE
Confidence 99999999876655422212233333333333322 22223 456667789999876665555554444433 55566
Q ss_pred EEEeeCCCCCCHHHHHHhHHCCCCEEEEec---CCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 106 ITLEANPSTFEIEKFHSYSIIGINRLSIGI---QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 106 it~e~~p~~l~~e~l~~l~~~Gv~risiGv---qS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
.++.+|...+|++..+.+++.|+ .|.+.+ +..+|..+...+-..|.+.+.++++.+++. .+ +++ ++-+..++
T Consensus 93 ~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~-~~~--~~vv~~~n 168 (378)
T COG0641 93 NALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVD-FNT--LTVVNRQN 168 (378)
T ss_pred EEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCc-EEE--EEEEchhH
Confidence 77899999999999999999999 777744 555666665555667899999999999997 55 555 33378999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccccc
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~f 251 (391)
.+...+.++++.+.+..++++.++....++.- .......+ .++..+......+...+.+.....+-.|
T Consensus 169 ~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~-~~~~~~~~-~~~~~~fl~~~~~~~~~~~~~~i~i~~f 236 (378)
T COG0641 169 VLHPEEIYHFLKSEGSKFIQFIPLVESDNRGD-SLLEFSVT-AEEYGQFLIAIFDEWVRHDVGRIFIQNF 236 (378)
T ss_pred hhCHHHHHHHHHHcccceEEEEecccCCCCCc-cccccccC-HHHHHHHHHHHHHHHHHhcCCeeeehhH
Confidence 99999999999999999999988775444321 00111122 2333344444445555555444444443
No 119
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=4.4e-08 Score=95.06 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=138.4
Q ss_pred CCCCCCceeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHH
Q psy2383 11 IKKLPPLSLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLD 88 (391)
Q Consensus 11 ~~~~~~~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~ 88 (391)
++.....++.|.. --|+.+|.||.-......... ..+.+++++...... ....+..|.|-| |.|.+ +.+.+.
T Consensus 95 ~~~~~~~t~cissq~GC~l~C~fC~tg~~g~~r~l----t~~EI~~qv~~~~~~-~~~~v~~Vvf~GmGEPLl-n~d~v~ 168 (343)
T PRK14469 95 LFHPDRITACISTQVGCPVKCIFCATGQSGFVRNL----TTGEIVSQILAMEKE-EKKKVGNVVYMGMGEPLL-NYENVI 168 (343)
T ss_pred EecCCCeEEEEEecCCCCCcCcCCCCCCCCccccC----CHHHHHHHHHHHHHh-ccCCcCeEEEEccChhhh-hHHHHH
Confidence 4444456777777 569999999975432211111 234455555332111 123577888888 99975 666777
Q ss_pred HHHHHHHHh--CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCC-EEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHH
Q psy2383 89 YLLKNIKKL--LLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIA 162 (391)
Q Consensus 89 ~ll~~i~~~--~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~-risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~ 162 (391)
++++.+.+. ++++ ...+++.++.. .+.++.|.+.|++ ++.+.+.+.+++..+.+ +|..+.+++.++++..
T Consensus 169 ~~i~~l~~~~~~~~g-~~~itisTnG~---~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~ 244 (343)
T PRK14469 169 KSIKILNHKKMKNIG-IRRITISTVGI---PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIY 244 (343)
T ss_pred HHHHHHhchhcccCC-CCeEEEECCCC---hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHH
Confidence 777777643 2222 23788887762 5788889999998 89999999999998875 5778999999988866
Q ss_pred Hhh-cccceEe--EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 163 KQY-FNNFNLD--LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 163 ~~~-~~~v~~d--lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
.+. ...+.+- +|-|+ ..+.+++.+..+.+..++. +|.+-++.+.++. ...|+.+...+ ..+.|.
T Consensus 245 ~~~~~~~v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~~-------~~~ps~e~l~~----f~~~l~ 311 (343)
T PRK14469 245 QKKTGNRVTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVPG-------LEKPSRERIER----FKEILL 311 (343)
T ss_pred HHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCcc-------CCCCCHHHHHH----HHHHHH
Confidence 554 3334433 44443 5778899988888888764 6888888765541 12455443332 346678
Q ss_pred HCCCce
Q psy2383 240 NNYYKN 245 (391)
Q Consensus 240 ~~Gy~~ 245 (391)
+.|...
T Consensus 312 ~~gi~v 317 (343)
T PRK14469 312 KNGIEA 317 (343)
T ss_pred HCCCeE
Confidence 888654
No 120
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.10 E-value=5.9e-08 Score=94.13 Aligned_cols=215 Identities=12% Similarity=0.118 Sum_probs=142.6
Q ss_pred CCCCCCceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcc-------cCCCeeEEEEeC-CCCCC
Q psy2383 11 IKKLPPLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII-------LNRKIHTIFIGG-GTPSL 81 (391)
Q Consensus 11 ~~~~~~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-------~~~~~~~i~~gG-Gtps~ 81 (391)
|+.....++.|..-- |+.+|.||.-...... +.-..+.+++++......+ .+.++..|.|-| |.|.+
T Consensus 115 i~~~~~~tlCvSsQvGC~m~C~FCatg~~g~~----RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl 190 (373)
T PRK14459 115 MRYPDRATLCISSQAGCGMACPFCATGQGGLT----RNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA 190 (373)
T ss_pred EEEcCCceEEEEecCCCCCcCCCCCCCCCCCC----CccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh
Confidence 333334455665553 9999999985433211 1222334444444322111 123588899999 99964
Q ss_pred CCHHHHHHHHHHHHHh----CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCC-EEEEecCCCCHHHHHHhC---CCCCHH
Q psy2383 82 ISDTGLDYLLKNIKKL----LLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNILG---RTHDSK 153 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~----~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~-risiGvqS~~~~~l~~l~---R~~~~~ 153 (391)
+.+.+.++++.+.+. +++++ ..+|+++.. +. ..++.|.+.+.. ++.+.+-|.|++..+++- |.++.+
T Consensus 191 -N~d~V~~~i~~l~~~~~~g~gis~-r~ITvST~G--l~-~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~ 265 (373)
T PRK14459 191 -NYKRVVAAVRRITAPAPEGLGISA-RNVTVSTVG--LV-PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVD 265 (373)
T ss_pred -hHHHHHHHHHHHhCcccccCCccC-CEEEEECcC--ch-hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHH
Confidence 677788888888762 44433 378888653 22 367778887875 899999999999998884 458889
Q ss_pred HHHHHHHHHHhh--cc-cceEeEecCCCCCCHHHHHHHHHHHHhcC--CCeEEEecccccCCCcccCCCCCCCCCHHHHH
Q psy2383 154 QAKYAIEIAKQY--FN-NFNLDLIYALPNQTLSELMLDLNYAIQYS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENA 228 (391)
Q Consensus 154 ~~~~~i~~~~~~--~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~ 228 (391)
++.++++...+. .+ .+..-+|=|+ ..+.++..+..+.+..++ +-+|.+-++.+.++..+. .|+.+...
T Consensus 266 ~ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~------~~~~~~~~ 338 (373)
T PRK14459 266 EVLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWT------ASPPEVER 338 (373)
T ss_pred HHHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCc------CCCHHHHH
Confidence 988887665533 21 2455566666 688999999999988885 568999999998877542 35544333
Q ss_pred HHHHHHHHHHHHCCCce
Q psy2383 229 VMQDKITSLLKNNYYKN 245 (391)
Q Consensus 229 ~~~~~~~~~L~~~Gy~~ 245 (391)
...+.|.++|+..
T Consensus 339 ----~F~~~L~~~gi~~ 351 (373)
T PRK14459 339 ----EFVRRLRAAGVPC 351 (373)
T ss_pred ----HHHHHHHHCCCeE
Confidence 3357788899764
No 121
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.09 E-value=5.8e-08 Score=93.41 Aligned_cols=216 Identities=12% Similarity=0.051 Sum_probs=139.2
Q ss_pred ccccCC-CCCCceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCC
Q psy2383 7 NNLYIK-KLPPLSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLIS 83 (391)
Q Consensus 7 ~~~~~~-~~~~~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~ 83 (391)
+.+.++ ...+.++.|.-. -|+.+|.||.-......+.... ..+++++....... ..+++.|.|-| |.|.+ +
T Consensus 86 E~V~ip~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~----~EI~~qi~~~~~~~-~~~i~nIvfmGmGEPll-N 159 (336)
T PRK14470 86 EAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRS----WEIVAQLLAVRADS-ERPITGVVFMGQGEPFL-N 159 (336)
T ss_pred EEEeccccCCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCH----HHHHHHHHHHHHhc-CCCCCEEEEEecCcccc-C
Confidence 344455 234566666655 3999999998765332212222 33444443322211 23578888888 99976 6
Q ss_pred HHHHHHHHHHHHHh--CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC-CEEEEecCCCCHHHHHHhCC---CCCHHHHHH
Q psy2383 84 DTGLDYLLKNIKKL--LLFKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILGR---THDSKQAKY 157 (391)
Q Consensus 84 ~~~l~~ll~~i~~~--~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv-~risiGvqS~~~~~l~~l~R---~~~~~~~~~ 157 (391)
.+.+.+++..+.+. ++++ ...++++++.- .+ .++.+.+.|. .+|.+.+.+.+++..+++.+ ..+.+++.+
T Consensus 160 ~d~v~~~i~~l~~~~~~~~~-~~~ItVsTnG~--~p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ 235 (336)
T PRK14470 160 YDEVLRAAYALCDPAGARID-GRRISISTAGV--VP-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVE 235 (336)
T ss_pred HHHHHHHHHHHhCccccccC-CCceEEEecCC--hH-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHH
Confidence 67788888888753 2332 46899998763 33 4445555554 78999999999999999954 568889989
Q ss_pred HHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHH
Q psy2383 158 AIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKIT 235 (391)
Q Consensus 158 ~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~ 235 (391)
+++...+. .. .+..-+|-|+ ..|.+++.+-.+.+..+.. ++.+-++.+.++ . +..|+.++..+. .
T Consensus 236 ai~~~~~~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~-~------~~~p~~~~i~~f----~ 302 (336)
T PRK14470 236 AIREHAALRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG-R------YRPPDEDEWNAF----R 302 (336)
T ss_pred HHHHHHHhCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC-C------ccCCCHHHHHHH----H
Confidence 88888776 32 2344556666 4778889888888887644 788888887554 2 234665544333 3
Q ss_pred HHHH--HCCCce
Q psy2383 236 SLLK--NNYYKN 245 (391)
Q Consensus 236 ~~L~--~~Gy~~ 245 (391)
+.|. ++|...
T Consensus 303 ~~l~~~~~g~~~ 314 (336)
T PRK14470 303 DALARELPGTPV 314 (336)
T ss_pred HHHHHccCCeEE
Confidence 5663 566653
No 122
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.08 E-value=1.4e-08 Score=99.72 Aligned_cols=210 Identities=14% Similarity=0.104 Sum_probs=131.6
Q ss_pred CCCC---CCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCC
Q psy2383 25 WCIK---KCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 101 (391)
Q Consensus 25 fC~~---~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~ 101 (391)
.|.. .|.||.-......+ ....++.+++|+......+....-...+.|||.|+. . +.+.++++.+++. +
T Consensus 31 ~C~~~~~~C~yC~~~~~e~~g---~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~-~-~~l~eLl~~lk~~-g-- 102 (404)
T TIGR03278 31 NCPPGTKGCDYCTRSVWEING---DFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSC-Y-PELEELTKGLSDL-G-- 102 (404)
T ss_pred cCCCCCCCCCCCCchhhhhcC---CcCCHHHHHHHHHHHHHHhcCCCCEEEEECCccccc-C-HHHHHHHHHHHhC-C--
Confidence 3744 88888543222111 122356666777654433322222334566666654 3 4789999999874 2
Q ss_pred CCcEEEEe-eCCC-CCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 102 KNISITLE-ANPS-TFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 102 ~~~eit~e-~~p~-~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
..+.++ +|.. ..+++.++.++++|++.|.+.|.+.|+++.+++-.....+.+.+.++.+.+.+. +.+-+ +=+||
T Consensus 103 --i~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~~~-v~~~i-vlIPG 178 (404)
T TIGR03278 103 --LPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESCE-VHAAS-VIIPG 178 (404)
T ss_pred --CCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhcCC-EEEEE-EEeCC
Confidence 356776 6654 348999999999999999999999999999986444455888888888877632 43333 23577
Q ss_pred CCH-HHHHHHHHHHHhcCCCeEEEecccccCCCc--ccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q psy2383 180 QTL-SELMLDLNYAIQYSPPHLSLYSLTIEPNTY--FFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 180 qt~-e~~~~~l~~~~~l~~~~is~y~l~~~pgT~--l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 246 (391)
-+. +++.++++++.++++..+.+.++....... +...+...-.......++.+.+.++.++.|+..+
T Consensus 179 iND~eel~~ti~~L~~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~ 248 (404)
T TIGR03278 179 VNDGDVLWKTCADLESWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVT 248 (404)
T ss_pred ccCcHHHHHHHHHHHHCCCCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 776 666799999999999988888876432221 1111100001122334455555666677776654
No 123
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=1.3e-07 Score=91.72 Aligned_cols=212 Identities=11% Similarity=0.117 Sum_probs=134.4
Q ss_pred CCCCCCceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHH
Q psy2383 11 IKKLPPLSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLD 88 (391)
Q Consensus 11 ~~~~~~~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~ 88 (391)
++.....+++|.+- -|+..|.||.-...... +.-..+.+++++..... ..+++.|.|-| |.|.+ +.+.+.
T Consensus 97 ~~~~~~~t~cvSsq~GC~~~C~FC~tg~~~~~----r~lt~~EI~~qv~~~~~---~~~i~~IvfmG~GEPl~-n~~~vi 168 (349)
T PRK14463 97 IPDEDRNTLCISSQVGCAMGCAFCLTGTFRLT----RNLTTAEIVNQVCAVKR---DVPVRNIVFMGMGEPLA-NLDNVI 168 (349)
T ss_pred EEecCCcEEEEEecCCcCCCCccCCCCCCCCC----CCCCHHHHHHHHHHHHh---cCCccEEEEecCCcchh-cHHHHH
Confidence 33333456666664 49999999975432211 12234455555554322 12356665555 99985 655666
Q ss_pred HHHHHHHH--hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHH
Q psy2383 89 YLLKNIKK--LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAK 163 (391)
Q Consensus 89 ~ll~~i~~--~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~ 163 (391)
+.++.+.+ .++++ ...++++++. +.+ .+..+....-..+.+.+.|.+++..+++ +|..+.+++.+++....
T Consensus 169 ~~l~~l~~~~gl~~s-~r~itVsTnG--l~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~ 244 (349)
T PRK14463 169 PALQILTDPDGLQFS-TRKVTVSTSG--LVP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFP 244 (349)
T ss_pred HHHHHhhcccccCcC-CceEEEECCC--chH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 66666643 22332 2478888765 333 3444444333356789999999999997 78899999988887666
Q ss_pred hh-cccceE-eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 164 QY-FNNFNL-DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 164 ~~-~~~v~~-dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
.. ...+.+ .++++-+.+|.+++.+..+++..++. +|.+-|+.+.+|..+ ..|+.+...+ ..+.|.++
T Consensus 245 ~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~~~------~~ps~e~i~~----f~~~L~~~ 313 (349)
T PRK14463 245 LPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGCDF------RSPTQEAIDR----FHKYLLDK 313 (349)
T ss_pred HhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCCCC------CCCCHHHHHH----HHHHHHHC
Confidence 54 333544 34444458899999999999998865 788888887766422 3466554333 34678888
Q ss_pred CCce
Q psy2383 242 YYKN 245 (391)
Q Consensus 242 Gy~~ 245 (391)
|...
T Consensus 314 gi~v 317 (349)
T PRK14463 314 HVTV 317 (349)
T ss_pred CceE
Confidence 8765
No 124
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.05 E-value=8.6e-08 Score=93.14 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=129.7
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcc--cCCCeeEEEEeC-CCCCCCCHHHHHHHHHHHHHh--CCC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII--LNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKL--LLF 100 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~--~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i~~~--~~~ 100 (391)
|+.+|.||.-......+.. ..+.+++++......+ .+.++..|.|-| |.|.+ +.+.+.++++.+.+. +++
T Consensus 115 C~l~C~fC~t~~~g~~r~l----t~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLl-n~d~v~~~l~~l~~~~g~~i 189 (355)
T TIGR00048 115 CALGCTFCATAKGGFNRNL----EASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLL-NLNEVVKAMEIMNDDFGLGI 189 (355)
T ss_pred CCCcCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhh-CHHHHHHHHHHhhcccccCc
Confidence 9999999986543211112 2233334433221111 123466565544 99976 677788888888653 334
Q ss_pred CCCcEEEEeeCCCCCCHHHHHHhHHCCCC-EEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHH-Hhh-cc-cceEeE
Q psy2383 101 KKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIA-KQY-FN-NFNLDL 173 (391)
Q Consensus 101 ~~~~eit~e~~p~~l~~e~l~~l~~~Gv~-risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~-~~~-~~-~v~~dl 173 (391)
+. ..++++++.- .+.++.|.+.+.+ .+.+.+-+.+++..+++ +|..+.+++.++++.. ++. .+ .+..-+
T Consensus 190 ~~-~~itisT~G~---~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvL 265 (355)
T TIGR00048 190 SK-RRITISTSGV---VPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVL 265 (355)
T ss_pred CC-CeEEEECCCc---hHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEE
Confidence 32 3789988763 2567788776765 78899999999999887 5667889888888754 333 21 255666
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
|=|+ .++.+++.+..+.+..+++ +|.+-++.+.++..+ ..|+.+.. ....+.|.++|+..
T Consensus 266 I~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~------~~ps~e~i----~~f~~~L~~~gi~v 325 (355)
T TIGR00048 266 LDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADY------ERPSNEQI----DRFAKTLMSYGFTV 325 (355)
T ss_pred ECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCC------CCCCHHHH----HHHHHHHHHCCCeE
Confidence 6665 5778999999999988864 788888887766543 23554433 23456788888775
No 125
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.05 E-value=3e-08 Score=97.26 Aligned_cols=190 Identities=14% Similarity=0.172 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCCCcccccC-cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKK-NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 102 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~ 102 (391)
--|+..|.||......+.. ......-++.+++.|+. ...+..|.|.||.|.+++.+.|+.+++.+++. ..
T Consensus 116 ~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~------~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~I---ph 186 (417)
T TIGR03820 116 NTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRN------TPQIRDVLLSGGDPLLLSDDYLDWILTELRAI---PH 186 (417)
T ss_pred CCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHh------cCCCCEEEEeCCccccCChHHHHHHHHHHhhc---CC
Confidence 4699999999865433211 11122334444444442 13588999999999999998888888988873 22
Q ss_pred CcEEEEeeC-----CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEec
Q psy2383 103 NISITLEAN-----PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIY 175 (391)
Q Consensus 103 ~~eit~e~~-----p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~ 175 (391)
...+.+-++ |..+|++.++.|++++...|++-+ -.++.+ .+++.+|++.++++ ++ ....-|+=
T Consensus 187 V~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~--nhp~Ei--------t~~a~~Al~~L~~aGI~l~nQsVLLk 256 (417)
T TIGR03820 187 VEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHF--NHPREI--------TASSKKALAKLADAGIPLGNQSVLLA 256 (417)
T ss_pred CceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeC--CChHhC--------hHHHHHHHHHHHHcCCEEEeeceEEC
Confidence 234778777 888999999999999864554444 344332 58899999999999 65 23355777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
|. ..+.+.+.+-.+.+.++++.--.+|.+.+.+|+.-++ .+.++..++++.++..+.
T Consensus 257 GV-ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFr------v~~~~g~~I~~~lr~~~s 313 (417)
T TIGR03820 257 GV-NDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFR------TPVGKGIEIIESLIGHTS 313 (417)
T ss_pred Cc-CCCHHHHHHHHHHHHHCCCeeceeeeccCCCCccccc------CcHHHHHHHHHHHHHhCC
Confidence 86 7899999999999999998777888888888886554 234667777777766654
No 126
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.04 E-value=1.5e-07 Score=90.99 Aligned_cols=214 Identities=13% Similarity=0.134 Sum_probs=135.7
Q ss_pred CCCCCCceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcc--cCCCeeEEEEeC-CCCCCCCHHH
Q psy2383 11 IKKLPPLSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII--LNRKIHTIFIGG-GTPSLISDTG 86 (391)
Q Consensus 11 ~~~~~~~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~--~~~~~~~i~~gG-Gtps~l~~~~ 86 (391)
++.....+++|..- =|+.+|.||........+.. ..+.+++++....... ...+++.|.|.| |.|.+ +.+.
T Consensus 87 i~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~L----t~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll-n~~~ 161 (343)
T PRK14468 87 MPYLDRKTICVSTMVGCPAGCAFCATGAMGFGRNL----TAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL-NYEN 161 (343)
T ss_pred EEecCCCEEEEEecCCCCCcCCCCCCCCCCCCCCC----CHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc-CHHH
Confidence 33333455565554 39999999985443211111 2334444444322111 123578898888 99987 6666
Q ss_pred HHHHHHHHHHh--CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCC-EEEEecCCCCHHHHHHhC---CCCCHHHHHHHHH
Q psy2383 87 LDYLLKNIKKL--LLFKKNISITLEANPSTFEIEKFHSYSIIGIN-RLSIGIQSFNNKYLNILG---RTHDSKQAKYAIE 160 (391)
Q Consensus 87 l~~ll~~i~~~--~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~-risiGvqS~~~~~l~~l~---R~~~~~~~~~~i~ 160 (391)
+.+.++.+... ++++. ..+++.++. + ...++.|.+.+.. ++.+.+-+.|++..+++. +..+.+++.++++
T Consensus 162 v~~~i~~l~~~~g~~l~~-r~itvST~G--~-~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~ 237 (343)
T PRK14468 162 VLKAARIMLHPQALAMSP-RRVTLSTVG--I-PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVR 237 (343)
T ss_pred HHHHHHHhcccccccccC-ceEEEECCC--C-hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHH
Confidence 66655555321 23332 368888776 2 4577778887765 799999999999999985 5668889988887
Q ss_pred HHHhh-cccceE--eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 161 IAKQY-FNNFNL--DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 161 ~~~~~-~~~v~~--dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
...+. ...+.+ -+|=|+ .++.+++.+..+.+..+. .+|.+-++.+.++..+ ..|+.+... ...+.
T Consensus 238 ~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~~~------~~ps~e~i~----~f~~~ 305 (343)
T PRK14468 238 HYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGSPF------QSSPRAQIL----AFADV 305 (343)
T ss_pred HHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCCCC------CCCCHHHHH----HHHHH
Confidence 55444 333444 444444 578888999999988885 4788888887655322 346654332 34567
Q ss_pred HHHCCCce
Q psy2383 238 LKNNYYKN 245 (391)
Q Consensus 238 L~~~Gy~~ 245 (391)
|.++|+..
T Consensus 306 L~~~Gi~v 313 (343)
T PRK14468 306 LERRGVPV 313 (343)
T ss_pred HHHCCCeE
Confidence 88888875
No 127
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.03 E-value=7.6e-08 Score=92.34 Aligned_cols=197 Identities=12% Similarity=0.034 Sum_probs=130.9
Q ss_pred CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHHHHHHHHHHhC--CCC
Q psy2383 25 WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLL--LFK 101 (391)
Q Consensus 25 fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i~~~~--~~~ 101 (391)
=|+.+|.||.-...... +.-..+.++.++...... .+++.|.|-| |.|. ++.+.+.+.++.+.+.. +++
T Consensus 112 GC~~~C~FC~Tg~~g~~----rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL-~N~d~vi~al~~l~~~~g~~~s 183 (345)
T PRK14466 112 GCKMNCLFCMTGKQGFT----GNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPL-DNLDEVLKALEILTAPYGYGWS 183 (345)
T ss_pred CCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCc-ccHHHHHHHHHHHhhccccCcC
Confidence 39999999985543211 112355566666544211 2578899999 9998 45555655555554432 233
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC---CCHHHHHHHHHHHHhh-cc--cceEeEec
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT---HDSKQAKYAIEIAKQY-FN--NFNLDLIY 175 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~---~~~~~~~~~i~~~~~~-~~--~v~~dlI~ 175 (391)
...++++++. +.+..-+.+.+.. .++.+.+-|.+++.++++-+. ++.+++.++++.-.+. .. .+..-||=
T Consensus 184 -~r~ItVsT~G--~~~~i~~l~~~~~-~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~ 259 (345)
T PRK14466 184 -PKRITVSTVG--LKKGLKRFLEESE-CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFK 259 (345)
T ss_pred -CceEEEEcCC--CchHHHHHhhccC-cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeC
Confidence 3589999875 3333333333344 478899999999999998754 6788888888774433 22 25566677
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
|+ ..+.++..+-.+.+..++ .+|.+-++.|.||.++ ..|+.+...+ ..+.|.++|...
T Consensus 260 gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~~------~~~s~~~~~~----F~~~L~~~gi~~ 317 (345)
T PRK14466 260 GL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVDL------EGSDMARMEA----FRDYLTSHGVFT 317 (345)
T ss_pred CC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCCC------cCCCHHHHHH----HHHHHHHCCCcE
Confidence 76 789999999999998876 7899999999888643 2355544333 346788888653
No 128
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.02 E-value=3e-08 Score=95.12 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=131.7
Q ss_pred eeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q psy2383 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKL 97 (391)
Q Consensus 18 ~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~ 97 (391)
.+-+-.+.|+.+|.||.-..............++.+++.|+.. .++..|.|.||.|.+.+...|.++++.+...
T Consensus 98 ~l~~~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~------~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i 171 (321)
T TIGR03821 98 VLLIVTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQH------PEINEVILSGGDPLMAKDHRLDWLLNLLEQI 171 (321)
T ss_pred EEEEeCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc------CCCCEEEEeCcccccCCchHHHHHHHHHHhC
Confidence 3444456699999999754332211112233455555555432 3578899999999988777788888887753
Q ss_pred CCCCCCcEEEE---eeCCCCCCHHHHHHhHHCCCCEEE-EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 98 LLFKKNISITL---EANPSTFEIEKFHSYSIIGINRLS-IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 98 ~~~~~~~eit~---e~~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
+-.....+.. -..|..++++.++.|+++|+..+. +.+.+.. ++ .+++.++++.++++ +. +...
T Consensus 172 -~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~Gi~-v~~q 239 (321)
T TIGR03821 172 -PHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKLRNAGIT-LLNQ 239 (321)
T ss_pred -CCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHHHHcCCE-EEec
Confidence 1111223322 235667899999999999987663 4555542 22 14588899999998 65 4333
Q ss_pred E--ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2383 173 L--IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 173 l--I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
. +=|+ ..+.+++.+..+.+.++++....+|.+.+..|+.-+ ..+.++..++++.+...+..
T Consensus 240 tvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f------~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 240 SVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF------DVDDERARALMAELLARLPG 302 (321)
T ss_pred ceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc------cCCHHHHHHHHHHHHHhCCC
Confidence 3 3343 478999999999999999998989998888876521 23456777778777776653
No 129
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.95 E-value=1.5e-07 Score=91.03 Aligned_cols=199 Identities=12% Similarity=0.135 Sum_probs=133.7
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccC---CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHh--CCC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILN---RKIHTIFIGGGTPSLISDTGLDYLLKNIKKL--LLF 100 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~---~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~--~~~ 100 (391)
|+.+|.||.-..... .+.-.++.+++|+......+.. ..-..++.|||.|.. +.+.+.++++.+++. +++
T Consensus 120 C~~~C~FCatg~~g~----~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~-N~d~v~~~l~~l~~~~Gl~~ 194 (356)
T PRK14462 120 CKVGCAFCLTAKGGF----VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLD-NLDNVSKAIKIFSENDGLAI 194 (356)
T ss_pred CCCCCccCCCCCCCC----cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccccc-CHHHHHHHHHHhcCccCCCc
Confidence 999999997543321 1222345566666543222211 123667888999965 888888888888874 333
Q ss_pred CCCcEEEEeeCCCCCCHHHHHHhHHCCC-CEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHH-hhcc--cceEeE
Q psy2383 101 KKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAK-QYFN--NFNLDL 173 (391)
Q Consensus 101 ~~~~eit~e~~p~~l~~e~l~~l~~~Gv-~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~-~~~~--~v~~dl 173 (391)
+. ..+|+++..- . +.++.|...+. ..+.+.+-+.|++..+++ ++.++.+++.++++... +.-. .+..=|
T Consensus 195 ~~-r~itVsTsG~--~-~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvL 270 (356)
T PRK14462 195 SP-RRQTISTSGL--A-SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLV 270 (356)
T ss_pred CC-CceEEECCCC--h-HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 32 3678887542 2 46666777665 578888999999999887 45567788888886433 3311 255666
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
|=|+ ..+.+++.+..+++..++ .+|.+-|+.+.+++.+ ..|+.+...+ ..+.|.++|...
T Consensus 271 I~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~------~~ps~e~i~~----f~~~l~~~gi~v 330 (356)
T PRK14462 271 IKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF------ERPSLEDMIK----FQDYLNSKGLLC 330 (356)
T ss_pred ECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC------CCCCHHHHHH----HHHHHHHCCCcE
Confidence 6676 689999999999999886 5899999998887654 2366554333 346688888654
No 130
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.93 E-value=6e-07 Score=86.77 Aligned_cols=208 Identities=13% Similarity=0.124 Sum_probs=134.3
Q ss_pred CceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHHHHHHH
Q psy2383 16 PLSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKN 93 (391)
Q Consensus 16 ~~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~ 93 (391)
..++.|.-. -|+.+|.||.-...... +.-..+.+++|+......+ +..+..|.|-| |.|.+ +.+.+.+.++.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~----rnlt~~EIv~qv~~~~~~~-~~~~~~IvfmGmGEPll-n~~~v~~~i~~ 173 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLK----RSLKAHEIVDQVLTVQEDM-QRRVSHVVFMGMGEPLL-NIDEVLAAIRC 173 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCc----cccCHHHHHHHHHHHHHHh-cCCCCEEEEEecCcccc-CHHHHHHHHHH
Confidence 344444432 49999999975433211 1123455666665443322 23477888888 99986 66667777777
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC-------CEEEEecCCCCHHHHHHhC---CCCCHHHHHHHHHH-H
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGI-------NRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEI-A 162 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv-------~risiGvqS~~~~~l~~l~---R~~~~~~~~~~i~~-~ 162 (391)
+.+.++++. ..+|+++.. ..+.++.|.+.++ ..+.+.+-+.|++..+++. +..+.+++.+++.. +
T Consensus 174 l~~~~~i~~-r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~ 249 (345)
T PRK14457 174 LNQDLGIGQ-RRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYV 249 (345)
T ss_pred HhcccCCcc-CceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 765455433 367887643 2345677776662 3688999999999999994 44567777766644 3
Q ss_pred Hhhccc--ceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2383 163 KQYFNN--FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 163 ~~~~~~--v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
.+.-.. +.+=+|=|+ ..+.+++.+..+++..+++ +|.+-|+.+.++..+ ..|+.+...+ ..+.|.+
T Consensus 250 ~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~------~~ps~e~i~~----f~~~L~~ 317 (345)
T PRK14457 250 AITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF------QRPSPKRIQA----FQRVLEQ 317 (345)
T ss_pred HHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC------CCCCHHHHHH----HHHHHHH
Confidence 333222 455566665 6788999999999998865 899999888776543 2455544333 3467888
Q ss_pred CCCce
Q psy2383 241 NYYKN 245 (391)
Q Consensus 241 ~Gy~~ 245 (391)
+|+..
T Consensus 318 ~Gi~v 322 (345)
T PRK14457 318 RGVAV 322 (345)
T ss_pred CCCeE
Confidence 88764
No 131
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.91 E-value=2.4e-07 Score=89.48 Aligned_cols=217 Identities=12% Similarity=0.155 Sum_probs=136.6
Q ss_pred cccCCCCCCceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHH
Q psy2383 8 NLYIKKLPPLSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDT 85 (391)
Q Consensus 8 ~~~~~~~~~~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~ 85 (391)
.+.++.....+++|.--- |+.+|.||.-......+. -..+.+++|+......+...++..|.|.| |.|.. +.+
T Consensus 90 ~V~i~~~~~~t~cvSsq~GC~l~C~FC~t~~~G~~rn----lt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~-N~d 164 (348)
T PRK14467 90 TVLIKERDHLTLCVSSQVGCAVGCKFCATAKDGLIRN----LRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLA-NYE 164 (348)
T ss_pred EEEEEeCCCcEEEEEcCCCCCCcCcCCCCCCCCCcCC----CCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhc-CHH
Confidence 333444344566666654 999999998654321111 22344555554332222233567788888 99975 788
Q ss_pred HHHHHHHHHHHh--CCCCCCcEEEEeeCCCCCCHHHHHHhHHC----CCCEEEEecCCCCHHHHHHhCCC---CCHHHHH
Q psy2383 86 GLDYLLKNIKKL--LLFKKNISITLEANPSTFEIEKFHSYSII----GINRLSIGIQSFNNKYLNILGRT---HDSKQAK 156 (391)
Q Consensus 86 ~l~~ll~~i~~~--~~~~~~~eit~e~~p~~l~~e~l~~l~~~----Gv~risiGvqS~~~~~l~~l~R~---~~~~~~~ 156 (391)
.+.++++.+.+. ++++. ..+|++++.- + ..++.+... .+ .+.+.+-+.|++..+++-+. .+.+++.
T Consensus 165 ~v~~~l~~l~~~~gl~~~~-r~itvsT~G~-~--~~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~ 239 (348)
T PRK14467 165 NVRKAVQIMTSPWGLDLSK-RRITISTSGI-I--HQIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELM 239 (348)
T ss_pred HHHHHHHHHcChhccCcCC-CcEEEECCCC-h--hHHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHH
Confidence 888888888643 33332 3788887642 2 233344332 34 67799999999999988654 5667777
Q ss_pred HHHHHHHhh-cccceEeEecCCCC--CCHHHHHHHHHHHHhcC-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHH
Q psy2383 157 YAIEIAKQY-FNNFNLDLIYALPN--QTLSELMLDLNYAIQYS-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQD 232 (391)
Q Consensus 157 ~~i~~~~~~-~~~v~~dlI~GlPg--qt~e~~~~~l~~~~~l~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~ 232 (391)
++++..... ...+.+-.++ +|| .+.+++.+..+++..++ +.+|.+-|+.+.|++.+ ..|+.++..
T Consensus 240 ~~~~~~~~~~g~~V~ieyvL-IpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~------~~ps~e~i~---- 308 (348)
T PRK14467 240 EVLKQYPLPPGRRIMLEYVL-IKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY------ERPELERVY---- 308 (348)
T ss_pred HHHHHHHHhcCCeEEEEEEE-ECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC------CCCCHHHHH----
Confidence 777544333 3334444443 455 67999999999998884 67899999988777654 235554433
Q ss_pred HHHHHHHHCCCce
Q psy2383 233 KITSLLKNNYYKN 245 (391)
Q Consensus 233 ~~~~~L~~~Gy~~ 245 (391)
.+.+.|.++|+..
T Consensus 309 ~f~~~L~~~gi~v 321 (348)
T PRK14467 309 KFQKILWDNGIST 321 (348)
T ss_pred HHHHHHHHCCCcE
Confidence 3456788888764
No 132
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.86 E-value=1.7e-07 Score=85.02 Aligned_cols=215 Identities=12% Similarity=0.119 Sum_probs=139.6
Q ss_pred CceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC---CCHHHHHHHHH
Q psy2383 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL---ISDTGLDYLLK 92 (391)
Q Consensus 16 ~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~---l~~~~l~~ll~ 92 (391)
....-|-=+-|..+|.||+.....+.. .-..-...|.+-++.. +++.+.+.+-+=.- -.+..+.+.+.
T Consensus 70 tATFmImG~~CTR~C~FC~V~~g~P~~--lD~~EP~rvAeaV~~m-------gLkyVViTsVdRDDL~DGGA~hfa~~i~ 140 (306)
T COG0320 70 TATFMILGDICTRRCRFCDVKTGRPNP--LDPDEPERVAEAVKDM-------GLKYVVITSVDRDDLPDGGAQHFAECIR 140 (306)
T ss_pred ceEEeeccchhccCCCccccCCCCCCC--CCCchHHHHHHHHHHh-------CCCeEEEEeeccccccccchHHHHHHHH
Confidence 334445556799999999977665321 1111223333333321 12333322111000 13667899999
Q ss_pred HHHHhCCCCCCcEEEEee-CCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh---cc
Q psy2383 93 NIKKLLLFKKNISITLEA-NPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY---FN 167 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~-~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~---~~ 167 (391)
+|++.- | ..++|+ .|+.- .++.++.+.++|.+-+.-.+||. ++....+.++.+.+.-.+.++.+++. +.
T Consensus 141 ~Ire~~---P--~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~ 214 (306)
T COG0320 141 AIRELN---P--QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIP 214 (306)
T ss_pred HHHhhC---C--CceEEEeCccccCCHHHHHHHHhcCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCcc
Confidence 999863 3 357777 56544 68899999999999999999985 55667777888999999999999997 33
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceec
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYE 247 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye 247 (391)
....+|+|| |||.+++.++++.+.+.++|.+++-++. .| |.-+-... ..-.+ + -|....+.-.+.||.+..
T Consensus 215 -TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYl-qP-S~~HlpV~-ryv~P-e---eF~~~~~~a~~~GF~~v~ 285 (306)
T COG0320 215 -TKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYL-QP-SRKHLPVQ-RYVTP-E---EFDELEEVAEEMGFLHVA 285 (306)
T ss_pred -cccceeeec-CCcHHHHHHHHHHHHHcCCCEEEecccc-CC-ccccCCce-eccCH-H---HHHHHHHHHHHccchhhc
Confidence 567899999 9999999999999999999999988765 23 21111110 11122 2 233444555678998765
Q ss_pred ccccccC
Q psy2383 248 ISAYSKT 254 (391)
Q Consensus 248 ~~~fa~~ 254 (391)
.+-+.|.
T Consensus 286 sgPlvRS 292 (306)
T COG0320 286 SGPLVRS 292 (306)
T ss_pred cCccccc
Confidence 5555553
No 133
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.80 E-value=6.8e-07 Score=86.41 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=129.3
Q ss_pred ceeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCe-eEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 17 LSLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKI-HTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 17 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~-~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
.+++|..-- |+.+|.||.-...... +.-.++.+++++......+. ..+ .-|++|||.|.+ +.+.+.++++.+
T Consensus 101 ~t~cvSsqvGC~~~C~FC~tg~~G~~----rnlt~~EI~~qv~~~~~~~~-~~~~gvV~mggGEPLl-n~d~v~~~l~~l 174 (342)
T PRK14454 101 NSICVSTQVGCRMGCKFCASTIGGMV----RNLTAGEMLDQILAAQNDIG-ERISNIVLMGSGEPLD-NYENVMKFLKIV 174 (342)
T ss_pred CEEEEEcCCCCCCcCCcCCCCCCCCc----ccCCHHHHHHHHHHHHHHhc-CCCCCEEEECCchhhc-CHHHHHHHHHHH
Confidence 445544432 9999999975433211 12234455556554332222 123 348899999976 788888999988
Q ss_pred HHh--CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC-CEEEEecCCCCHHHHHHhCC---CCCHHHHHHHHHH-HHhh-c
Q psy2383 95 KKL--LLFKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEI-AKQY-F 166 (391)
Q Consensus 95 ~~~--~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv-~risiGvqS~~~~~l~~l~R---~~~~~~~~~~i~~-~~~~-~ 166 (391)
++. ++++. ..++++++. +.+. +..+.+.+. ..+.+.+-+.|++..+++-. ....+++.++++. +.+. .
T Consensus 175 ~~~~gi~~~~-r~itvsTsG--~~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~ 250 (342)
T PRK14454 175 NSPYGLNIGQ-RHITLSTCG--IVPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNR 250 (342)
T ss_pred hcccccCcCC-CceEEECcC--ChhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCC
Confidence 863 33332 367888754 2233 555655532 24899999999999988864 3455666655544 2232 2
Q ss_pred c-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 167 N-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 167 ~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+ .+..=+|=|+ ..+.+++.+..+.+..+ +-+|.+-|+.+.++..+ ..|+.+... ...+.|.++|+..
T Consensus 251 rv~iey~LI~gv-NDs~eda~~La~llk~l-~~~VnLiPyn~~~~~~~------~~ps~e~l~----~f~~~l~~~gi~v 318 (342)
T PRK14454 251 RITFEYALVKGV-NDSKEDAKELGKLLKGM-LCHVNLIPVNEVKENGF------KKSSKEKIK----KFKNILKKNGIET 318 (342)
T ss_pred EEEEEEEeECCC-CCCHHHHHHHHHHHhcC-CceEEEEecCCCCCCCC------CCCCHHHHH----HHHHHHHHCCCcE
Confidence 2 1344456555 57899999999988877 45899989888766533 245554433 2356788888765
No 134
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.77 E-value=5.1e-07 Score=84.23 Aligned_cols=174 Identities=19% Similarity=0.225 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCCCcccccCcccHHH--HHHHHHHHHHhccCccc--CCCeeEEEEeC-CCCCCCCHHHHHHHHHHHHHhC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKK--YLEALLIDVELSLPIIL--NRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLL 98 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~--y~~~l~~Ei~~~~~~~~--~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i~~~~ 98 (391)
.+|.++|.||-....... .....+ ..+.+.++++......+ +..++.+-|.| |.|++.+ .|.++++.+++.-
T Consensus 32 ~~Cs~~CvyC~~G~~~~~-~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~--~L~elI~~~k~~g 108 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKG-TPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYP--NLGELIEEIKKRG 108 (296)
T ss_pred hhhcCCCeEEecccCCCC-CCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCccccc--CHHHHHHHHHhcC
Confidence 479999999986322211 111222 23566777776554322 24678886654 8999854 6899999999862
Q ss_pred CCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC---CHHHHHHHHHHHHhh---cccceEe
Q psy2383 99 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH---DSKQAKYAIEIAKQY---FNNFNLD 172 (391)
Q Consensus 99 ~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~---~~~~~~~~i~~~~~~---~~~v~~d 172 (391)
. ....+=+|.. + ++.++.|. -++-|++.+++.|++..++++|++ +.+.+.+.++.+++. -.-+-+-
T Consensus 109 ~----~~tflvTNgs-l-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~t 180 (296)
T COG0731 109 K----KTTFLVTNGS-L-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTT 180 (296)
T ss_pred C----ceEEEEeCCC-h-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEE
Confidence 1 2444445553 3 77777776 579999999999999999999997 567788888887773 1124555
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
++=|+ ..+.+++.+-.+.+....|+.|.+-..+..|
T Consensus 181 lvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~rpg 216 (296)
T COG0731 181 LVKGI-NDDEEELEEYAELLERINPDFVELKTYMRPG 216 (296)
T ss_pred Eeccc-cCChHHHHHHHHHHHhcCCCeEEEecCccCC
Confidence 66666 4566668888888889999999988877443
No 135
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.76 E-value=4.6e-06 Score=81.31 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=125.6
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc------CCCe-eEEEEeCCCCCCCCHHHHHHHHHHHHHhC
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL------NRKI-HTIFIGGGTPSLISDTGLDYLLKNIKKLL 98 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~------~~~~-~~i~~gGGtps~l~~~~l~~ll~~i~~~~ 98 (391)
|+.+|.||.-+....... -..+.+++|+......+. +.++ ..|+.|+|.|.+ +.+.+.+.+..+.+..
T Consensus 113 C~~~C~FC~t~~~g~~rn----Lt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~-N~d~v~~al~~l~~~~ 187 (372)
T PRK11194 113 CALECKFCSTAQQGFNRN----LRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL-NLNNVVPAMEIMLDDF 187 (372)
T ss_pred CCCcCCCCCCCCCCCCCc----CCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcccc-CHHHHHHHHHHHhhhh
Confidence 999999998554322111 223445555543322221 1223 347888899975 7777777777777543
Q ss_pred --CCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC---CCCCHHHHHHHHHHHHhh-c---cc-
Q psy2383 99 --LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAKQY-F---NN- 168 (391)
Q Consensus 99 --~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~---R~~~~~~~~~~i~~~~~~-~---~~- 168 (391)
+++. ..+++++.. +.+ .++.|.+..--.+.+.+-+.|++..+++- +....+++.++++.-.+. - ..
T Consensus 188 g~~i~~-r~itVsTsG--~~~-~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI 263 (372)
T PRK11194 188 GFGLSK-RRVTLSTSG--VVP-ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRV 263 (372)
T ss_pred ccCcCC-CeEEEECCC--Cch-HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeE
Confidence 3433 378998765 223 45555554434677789999999998775 345667776555443221 1 11
Q ss_pred -ceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 169 -FNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 169 -v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+..=+|=|+ ..+.+++.+..+++..++. +|.+-|+.+.++..+ ..|+.+... ...+.|.++|+..
T Consensus 264 ~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~~~~~~~------~~ps~e~v~----~f~~~L~~~Gi~v 329 (372)
T PRK11194 264 TVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY------GRSSNSRID----RFSKVLMEYGFTV 329 (372)
T ss_pred EEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCCCCCCCC------CCCCHHHHH----HHHHHHHHCCCeE
Confidence 445566666 5799999999999988864 899999998887654 235554432 2356788888765
No 136
>KOG2900|consensus
Probab=98.70 E-value=5.7e-08 Score=86.66 Aligned_cols=188 Identities=11% Similarity=0.133 Sum_probs=132.2
Q ss_pred eEeccCCCCCCCCCCCCCcccccC-cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCC-CCCHHHHHHHHHHHHH
Q psy2383 19 LYIHFPWCIKKCPYCDFHSYEIKK-NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPS-LISDTGLDYLLKNIKK 96 (391)
Q Consensus 19 lYihiPfC~~~C~yC~~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps-~l~~~~l~~ll~~i~~ 96 (391)
|-|.-.=|.-.|.||...+....+ ....--.+|.+++|.+..... +-..+..|..--. .-....+.++++.|++
T Consensus 87 lsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~----GSTRFCmGaAWRD~~GRk~~fk~IlE~ike 162 (380)
T KOG2900|consen 87 LSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN----GSTRFCMGAAWRDMKGRKSAFKRILEMIKE 162 (380)
T ss_pred EEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc----CCceeecchhhhhhccchhHHHHHHHHHHH
Confidence 344555699999999987776543 112223567777777654321 2233333321000 0123467889999888
Q ss_pred hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec
Q psy2383 97 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 97 ~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~ 175 (391)
.-++ +.|+.+. -+.++.+..+.|+++|++...-.+.+..+-.-+.+ -..+.++-.+.++.++++ +. ++..-|+
T Consensus 163 vr~M--gmEvCvT--LGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvI-tTRtYDdRL~Ti~nvr~aGik-vCsGGIl 236 (380)
T KOG2900|consen 163 VRDM--GMEVCVT--LGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVI-TTRTYDDRLQTIKNVREAGIK-VCSGGIL 236 (380)
T ss_pred HHcC--Cceeeee--eccccHHHHHHHHhccceecccCccchhhhhcccc-eecchHHHHHHHHHHHHhcce-ecccccc
Confidence 6544 3454443 45689999999999999999999988655554444 345778899999999999 76 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC--CCeEEEecccccCCCcccCCC
Q psy2383 176 ALPNQTLSELMLDLNYAIQYS--PPHLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~ 217 (391)
|| ||+.++-.--+..+..+. |+.+-+..|.+.+|||+....
T Consensus 237 GL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~ 279 (380)
T KOG2900|consen 237 GL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEK 279 (380)
T ss_pred cc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchhh
Confidence 99 999998877777777664 678889999999999998743
No 137
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.70 E-value=2.2e-06 Score=82.47 Aligned_cols=205 Identities=13% Similarity=0.085 Sum_probs=127.3
Q ss_pred eeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHHHHHHHHH
Q psy2383 18 SLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 18 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i~ 95 (391)
++-|.--- |+..|.||.-......+.. ....+++++......++ .++..|.|-| |.|.+ +-+.+.+.++.++
T Consensus 106 t~CvSsQvGC~m~C~FC~tg~~g~~rnl----ta~EI~~qv~~~~~~~~-~~~~niVFmGmGEPL~-N~d~V~~~~~~l~ 179 (342)
T PRK14465 106 TICISSQIGCTLNCKFCATAKLEFQGNL----KAHEIVDQVLQVEKIVG-DRATNVVFMGMGEPMH-NYFNVIRAASILH 179 (342)
T ss_pred EEEEEecCCCCCCCCCCcCCCCCccCCC----CHHHHHHHHHHHHHhcC-CCceEEEEEcCCcchh-hHHHHHHHHHHHh
Confidence 34444333 9999999986553322222 22333334332222122 2355555555 89964 6677777777776
Q ss_pred Hh--CCCCCCcEEEEeeCCCCCCHHHHHHhH-HCCCCEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhh-ccc
Q psy2383 96 KL--LLFKKNISITLEANPSTFEIEKFHSYS-IIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNN 168 (391)
Q Consensus 96 ~~--~~~~~~~eit~e~~p~~l~~e~l~~l~-~~Gv~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~~~-~~~ 168 (391)
+. ++++. ..||+.++. +-+. +..|. ...--.++|.+.+.+++.+.++ ++.++.+++.++++...+. -..
T Consensus 180 ~~~~~~~~~-r~itvST~G--~~~~-i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~ 255 (342)
T PRK14465 180 DPDAFNLGA-KRITISTSG--VVNG-IRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRR 255 (342)
T ss_pred ChhhhcCCC-CeEEEeCCC--chHH-HHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCE
Confidence 54 34433 478888765 2343 44444 3333489999999999999988 6788889999999865533 222
Q ss_pred ce--EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 169 FN--LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 169 v~--~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+. .-+|=|+ ..+.+++.+..+.+..++ -+|.+-++.+. +.. ...|+.+...+ ..+.|.++|+..
T Consensus 256 v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~~-~~~------~~~ps~e~i~~----F~~~L~~~Gi~v 321 (342)
T PRK14465 256 ITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNTE-FFG------WRRPTDDEVAE----FIMLLEPAGVPI 321 (342)
T ss_pred EEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCCC-CCC------CCCCCHHHHHH----HHHHHHHCCCeE
Confidence 44 4444454 468899999999998886 56888888772 321 23466654443 345788888764
No 138
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.65 E-value=1.2e-05 Score=77.77 Aligned_cols=208 Identities=14% Similarity=0.102 Sum_probs=130.5
Q ss_pred ceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHHHHHHHH
Q psy2383 17 LSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 17 ~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i 94 (391)
.++-|.-- -|+.+|.||.-......+.. ..+.+++++..... .+.+++.|.|-| |.|.+ +. .+.+.++.+
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~g~~rnL----t~~EIv~qv~~~~~--~~~~i~~IvfmGmGEPLl-n~-~v~~~i~~l 171 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSIGLKRNL----TADEITDQLLYFYL--NGHRLDSISFMGMGEALA-NP-ELFDALKIL 171 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCCCCcccC----CHHHHHHHHHHHHh--cCCCcceEEEeecCCccC-CH-HHHHHHHHH
Confidence 45555543 39999999986644222112 33445555543321 134588899999 99986 44 466777777
Q ss_pred HH--hCCCCCCcEEEEeeCCCCCCHHHHHHhHH-CCCCEEEEecCCCCHHHHHHhC---CCCCHHHHHHHHHHHHhh--c
Q psy2383 95 KK--LLLFKKNISITLEANPSTFEIEKFHSYSI-IGINRLSIGIQSFNNKYLNILG---RTHDSKQAKYAIEIAKQY--F 166 (391)
Q Consensus 95 ~~--~~~~~~~~eit~e~~p~~l~~e~l~~l~~-~Gv~risiGvqS~~~~~l~~l~---R~~~~~~~~~~i~~~~~~--~ 166 (391)
.+ .++++ ...++++++.- +. .++.+.+ ..-..+.+.+-+.+++..+++- +....+++.++++...+. .
T Consensus 172 ~~~~~~~~~-~r~itVsT~G~-~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~ 247 (347)
T PRK14453 172 TDPNLFGLS-QRRITISTIGI-IP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGR 247 (347)
T ss_pred hcccccCCC-CCcEEEECCCC-ch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Confidence 66 23333 24689988652 21 2333333 2335777899999999988773 456677776666554332 1
Q ss_pred c-cceEeEecCCCCCCHHHHHHHHHHHHhcC----CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 167 N-NFNLDLIYALPNQTLSELMLDLNYAIQYS----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 167 ~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~----~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
+ .+.+=+|=|+ ..+.+++.+.++++..++ +.+|.+-|+.+.++.+. ....|+.+... ...+.|.++
T Consensus 248 ~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~----~~~~ps~e~v~----~f~~~L~~~ 318 (347)
T PRK14453 248 KVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPF----KFQSSSAGQIK----QFCSTLKSA 318 (347)
T ss_pred cEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCc----cCCCCCHHHHH----HHHHHHHHC
Confidence 1 2556667676 678889999999999874 67899999998776431 12345554433 334678888
Q ss_pred CCce
Q psy2383 242 YYKN 245 (391)
Q Consensus 242 Gy~~ 245 (391)
|+..
T Consensus 319 Gi~v 322 (347)
T PRK14453 319 GISV 322 (347)
T ss_pred CCcE
Confidence 9764
No 139
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.59 E-value=2e-05 Score=76.05 Aligned_cols=204 Identities=11% Similarity=0.094 Sum_probs=129.8
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHH---HHHhcc------CcccCCCeeEEEE-eCCCCCCCCHHHHHHHHHHHH
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLI---DVELSL------PIILNRKIHTIFI-GGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~---Ei~~~~------~~~~~~~~~~i~~-gGGtps~l~~~~l~~ll~~i~ 95 (391)
|+..|.||.-......+.....+.++.+.. +++... ......++..|.| |=|.|-. +.+.+.+.++.+.
T Consensus 117 C~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~-NydnV~~ai~il~ 195 (371)
T PRK14461 117 CGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFA-NYDRWWQAVERLH 195 (371)
T ss_pred ccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchh-hHHHHHHHHHHhc
Confidence 999999998655443333334444444321 111100 0000123555555 4488854 5566666666664
Q ss_pred H--hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC-CEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhh-ccc
Q psy2383 96 K--LLLFKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNN 168 (391)
Q Consensus 96 ~--~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv-~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~~~-~~~ 168 (391)
. .++++. -.||+.+.. +. ..++.|.+-+. .++.+.+-+.++++++++ +|.++.+++.++++.-.+. -..
T Consensus 196 d~~g~~is~-R~ITVST~G--iv-p~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rr 271 (371)
T PRK14461 196 DPQGFNLGA-RSMTVSTVG--LV-KGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRR 271 (371)
T ss_pred CccccCcCC-CceEEEeec--ch-hHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCE
Confidence 3 344443 367777543 33 35556666443 489999999999999887 7888999998888776544 322
Q ss_pred --ceEeEecCCCCCCHHHHHHHHHHHHhcC-----CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 169 --FNLDLIYALPNQTLSELMLDLNYAIQYS-----PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 169 --v~~dlI~GlPgqt~e~~~~~l~~~~~l~-----~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
+..-||=|+ ..++++..+-.+.+..++ +-+|.+-++.+.||+++.+ |+.+... ...+.|.++
T Consensus 272 it~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~------ps~~~i~----~F~~~L~~~ 340 (371)
T PRK14461 272 VSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGR------SERERVT----TFQRILTDY 340 (371)
T ss_pred EEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCC------CCHHHHH----HHHHHHHHC
Confidence 445566676 789999999988888773 4589999999999987543 5544333 334678888
Q ss_pred CCce
Q psy2383 242 YYKN 245 (391)
Q Consensus 242 Gy~~ 245 (391)
|...
T Consensus 341 gi~v 344 (371)
T PRK14461 341 GIPC 344 (371)
T ss_pred CceE
Confidence 8763
No 140
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.2e-05 Score=73.12 Aligned_cols=177 Identities=16% Similarity=0.322 Sum_probs=120.4
Q ss_pred CCCC-ceeEeccCCCCCCCCCCCCCccccc-CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHH
Q psy2383 13 KLPP-LSLYIHFPWCIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYL 90 (391)
Q Consensus 13 ~~~~-~~lYihiPfC~~~C~yC~~~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~l 90 (391)
.-+| ..+.|..-=|+.+|.||.-+..... ...........++.++... ....+.|.|.||.|++ ..+.+.++
T Consensus 31 d~~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~-----~~~~~gvt~SGGEP~~-q~e~~~~~ 104 (260)
T COG1180 31 DGPGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFY-----SESGGGVTFSGGEPTL-QAEFALDL 104 (260)
T ss_pred CCCCcEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhh-----cCCCCEEEEECCcchh-hHHHHHHH
Confidence 3355 6777777779999999986655431 1111222223333333322 2357889999999987 56788888
Q ss_pred HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccc
Q psy2383 91 LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNF 169 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v 169 (391)
+..+++. +..+.+++|. .++++.++.|.+. ++.+.+-+=.++++..+.+. +.+.+.+.+.++.+.+. .. +
T Consensus 105 ~~~ake~-----Gl~~~l~TnG-~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~g~~-v 175 (260)
T COG1180 105 LRAAKER-----GLHVALDTNG-FLPPEALEELLPL-LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVH-V 175 (260)
T ss_pred HHHHHHC-----CCcEEEEcCC-CCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcCCCe-E
Confidence 8888875 4578888886 5788888777777 89999999999999666554 23338899999999997 43 3
Q ss_pred eEeEecCCCCC--CHHHHHHHHHHHHhcCC-CeEEEecc
Q psy2383 170 NLDLIYALPNQ--TLSELMLDLNYAIQYSP-PHLSLYSL 205 (391)
Q Consensus 170 ~~dlI~GlPgq--t~e~~~~~l~~~~~l~~-~~is~y~l 205 (391)
-+-..+ .||+ ..+++++-++++.++.+ ..+.+-++
T Consensus 176 e~r~lv-iPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~f 213 (260)
T COG1180 176 EIRTLV-IPGYNDDEEEIRELAEFIADLGPEIPIHLLRF 213 (260)
T ss_pred EEEEEE-ECCCCCCHHHHHHHHHHHHhcCCcccEEEecc
Confidence 222221 4765 78999999999998643 33444443
No 141
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.53 E-value=1.1e-05 Score=77.82 Aligned_cols=221 Identities=10% Similarity=0.088 Sum_probs=145.1
Q ss_pred CCceeEeccCC------CCCC---CCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc-CCCeeEEEEeCCCCCCCCH
Q psy2383 15 PPLSLYIHFPW------CIKK---CPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL-NRKIHTIFIGGGTPSLISD 84 (391)
Q Consensus 15 ~~~~lYihiPf------C~~~---C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~i~~gGGtps~l~~ 84 (391)
.+.-..++||. |..- |.||.......... . .....+.+|...-.. +. .......-=+||.++..+
T Consensus 20 e~~~~l~~Vn~~~~~~~c~~~~~~C~~cy~~v~~~~~~-~--~~~~~v~~e~~~~lg-~~~e~~~~~~~~~~~d~~c~p- 94 (414)
T COG1625 20 EEGDYLLKVNPGFGCKDCIPYRFGCDDCYLSVNELDTG-F--IPPLMVEKEPDEDLG-LEFEEVLGAKQCGNGDTFCYP- 94 (414)
T ss_pred cccceeeecCCCCCCCcCCCccccccceeeEEecccCC-C--CCHhHhhcccccccc-cccccccceeecCCCCcccCc-
Confidence 34445567773 6555 77886544432211 1 112233444432111 11 011122333455554432
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy2383 85 TGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK 163 (391)
Q Consensus 85 ~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~ 163 (391)
+++......+.++. .++..++.-. +-- .+.+..+.+.++|++-|++.|+|.+|++++++=|...+++..+.+++..
T Consensus 95 -~le~~~~r~~~~~~-d~~~rL~~tsG~~~-~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~ 171 (414)
T COG1625 95 -DLEPRGRRARLYYK-DDDIRLSFTSGSGF-TLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFA 171 (414)
T ss_pred -chhhhhhHHHhhcC-Cccceeeeeeccce-eccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 56777777777653 2334555543 332 3445666688999999999999999999999999999999999999999
Q ss_pred hh-cccceEeEecCCCCCC-HHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 164 QY-FNNFNLDLIYALPNQT-LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 164 ~~-~~~v~~dlI~GlPgqt-~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
+. +. +.++++. .||-+ -+++.+|++.+.++++..+.+....|.--|.+.+. -...+..++...+.....+...+.
T Consensus 172 ~~~~~-v~a~iVl-~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~-~i~~~t~~~l~~~k~i~re~~~E~ 248 (414)
T COG1625 172 ERCIE-VHAQIVL-CPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRP-GIRPPTPHELEEFKEIVREFDREL 248 (414)
T ss_pred Hhhhh-eeeEEEE-cCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCCC-CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 98 66 8898877 69988 99999999999999999888886334333443332 224566778888888888888888
Q ss_pred C-Ccee
Q psy2383 242 Y-YKNY 246 (391)
Q Consensus 242 G-y~~y 246 (391)
| |..-
T Consensus 249 ~~~~V~ 254 (414)
T COG1625 249 GSIRVT 254 (414)
T ss_pred CceEEe
Confidence 8 6543
No 142
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.49 E-value=1.3e-05 Score=75.89 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCcccccC-cc-----cHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCC
Q psy2383 26 CIKKCPYCDFHSYEIKK-NI-----SEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLL 99 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~-~~-----~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~ 99 (391)
|.+.|.||......... .. .....++.+.+|+... +.+...|.+|.-|..+.+.+.-.++...+.+...
T Consensus 39 C~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~-----~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~ 113 (297)
T COG1533 39 CSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKP-----GPKRTVIAISSVTDPYQPIEKEYRLTRKILEILL 113 (297)
T ss_pred CCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhc-----cCCceEEEEecCCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999865444321 11 1233566666666532 2356788999888888775554444444443221
Q ss_pred CCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhh-cccceEeEec
Q psy2383 100 FKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 100 ~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~-~~~~~~~~~i~~~~~~-~~~v~~dlI~ 175 (391)
..+..+++.+.-..+ |-+.+..++.-+-.+|.+.|-|.++++.+.+-.. -+.++-.++++.+.++ ++ +.+-+-=
T Consensus 114 -~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~-~~v~v~P 191 (297)
T COG1533 114 -KYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIP-VGLFVAP 191 (297)
T ss_pred -HcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCe-EEEEEec
Confidence 123467777643222 5677877878887799999999998898888654 5888899999999998 76 4433322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc
Q psy2383 176 ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
=+|+.|.+++.+.+..+.+.++.++....+...
T Consensus 192 IiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~ 224 (297)
T COG1533 192 IIPGLNDEELERILEAAAEAGARVVVYGTLRLR 224 (297)
T ss_pred ccCCCChHHHHHHHHHHHHcCCCeeEeeeeecc
Confidence 279999999999999999999999877666543
No 143
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.48 E-value=1.5e-05 Score=76.79 Aligned_cols=204 Identities=10% Similarity=0.094 Sum_probs=127.8
Q ss_pred eeEeccCC-CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeC-CCCCCCCHHHHHHHHHHHH
Q psy2383 18 SLYIHFPW-CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG-GTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 18 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i~ 95 (391)
+++|..-- |+..|.||.-......+.. ..+.+++++....+ ...++.|.|-| |.|.. +.+.+.+.++.+.
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~~g~~RnL----s~~EI~~Qv~~~~~---~~~i~nIVfmGmGEPl~-N~d~vl~ai~~l~ 168 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGRSGLLRQL----GSAEIVAQVVLARR---RRAVKKVVFMGMGEPAH-NLDNVLEAIDLLG 168 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCCCCCCCCC----CHHHHHHHHHHHHh---cCCCCEEEEeccCcccC-CHHHHHHHHHHhh
Confidence 56666653 9999999975443221111 23344455543322 24588999999 99985 4454545444554
Q ss_pred HhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC-CEEEEecCCCCHHHHHHhCC---CCCHHHHHHHHHHHHhh-cccc-
Q psy2383 96 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGI-NRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEIAKQY-FNNF- 169 (391)
Q Consensus 96 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv-~risiGvqS~~~~~l~~l~R---~~~~~~~~~~i~~~~~~-~~~v- 169 (391)
+.++++. ..+++.+- . ..+.++.|.+.++ ..+.+.+.+.+++.++.+.+ ..+.+++.++++...+. ...+
T Consensus 169 ~~~~i~~-r~itiST~-G--~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~ 244 (344)
T PRK14464 169 TEGGIGH-KNLVFSTV-G--DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQ 244 (344)
T ss_pred chhcCCC-ceEEEecc-c--CchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEE
Confidence 4334432 45666432 1 2334566665443 36667899999999998865 45888888877665544 2222
Q ss_pred -eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 170 -NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 170 -~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
..-||=|+ ..+.++..+-.+.+..+. -+|.+-|+.+.+|+.+.+ |+.+...+ ..+.|.++|...
T Consensus 245 ~EyvLl~GV-NDs~e~a~~L~~~l~~~~-~~vNLIPyN~v~g~~~~r------p~~~~i~~----f~~~L~~~gi~~ 309 (344)
T PRK14464 245 YQWTLLEGV-NDSDEEMDGIVRLLKGKY-AVMNLIPYNSVDGDAYRR------PSGERIVA----MARYLHRRGVLT 309 (344)
T ss_pred EEEEEeCCC-CCCHHHHHHHHHHHhccc-cccceecCCccCCCCccC------CCHHHHHH----HHHHHHHCCceE
Confidence 34455566 689999998888887664 468899999888876533 55443333 446788888654
No 144
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.47 E-value=5.5e-06 Score=76.04 Aligned_cols=210 Identities=16% Similarity=0.218 Sum_probs=138.5
Q ss_pred CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhc-cCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELS-LPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 102 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~-~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~ 102 (391)
-||-+.|.||--.+.... ++.++ -.+||..+ ...+...=|+-+|+..|.--- +...++++++.++. +.+..
T Consensus 62 N~CiyDC~YCINr~s~~~---pra~f---tp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~DyTmE~mi~var~-LRle~ 133 (404)
T COG4277 62 NFCIYDCAYCINRSSNDT---PRARF---TPEEIVDLTLNFYRRNYIEGLFLSSGVIKN-PDYTMEEMIEVARI-LRLEH 133 (404)
T ss_pred hhHHHhhHHHhccccCCC---ccccc---CHHHHHHHHHHHHHHhhhhhheeccccccC-cchHHHHHHHHHHH-Hhhcc
Confidence 579999999975333221 11121 11333321 122222236777877764221 22345555555543 22221
Q ss_pred --CcEEEEeeCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-------------
Q psy2383 103 --NISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY------------- 165 (391)
Q Consensus 103 --~~eit~e~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~------------- 165 (391)
..-|.+-+-|+ .+++.+ +++| ++|+||.||.-.++-|+.+....+..++.+.+.+++..
T Consensus 134 ~f~GYIHlK~IPg-as~~li---~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~ 209 (404)
T COG4277 134 KFRGYIHLKIIPG-ASPDLI---KEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRH 209 (404)
T ss_pred ccCcEEEEEecCC-CCHHHH---HHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhcc
Confidence 23466666664 455555 4455 68999999999999999999888888999888887761
Q ss_pred ---c-c-cceEeEecCCCCCCHHHHHHHHHHHH-hcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 166 ---F-N-NFNLDLIYALPNQTLSELMLDLNYAI-QYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 166 ---~-~-~v~~dlI~GlPgqt~e~~~~~l~~~~-~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
| + .-+..+|+|--|+|.+++......+. ..+..+|-+..++|.|+|++-... .|+.-...++| .|...|.
T Consensus 210 tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~---~pplmRehRLY-QADwLlr 285 (404)
T COG4277 210 TPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDD---KPPLMREHRLY-QADWLLR 285 (404)
T ss_pred CccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCccc---CCchhHHHHHH-HHHHHHH
Confidence 1 1 15689999999999999998888777 467899988899999999875432 34444556666 4677788
Q ss_pred HCCCceeccc
Q psy2383 240 NNYYKNYEIS 249 (391)
Q Consensus 240 ~~Gy~~ye~~ 249 (391)
-.||.+-|+.
T Consensus 286 fYgF~~~Ei~ 295 (404)
T COG4277 286 FYGFSADEIL 295 (404)
T ss_pred HhCCCHHHHH
Confidence 8999887764
No 145
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.29 E-value=5.9e-07 Score=73.39 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=43.4
Q ss_pred eEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC-CCHHHHHHHHHHHHHh
Q psy2383 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL-ISDTGLDYLLKNIKKL 97 (391)
Q Consensus 19 lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~-l~~~~l~~ll~~i~~~ 97 (391)
+|++...|+.+|.||........ ........+.+.+.|+.... .......|.|+||.|.+ ++.+.+.++++.+++.
T Consensus 1 ~F~~t~~Cnl~C~~C~~~~~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~ 77 (119)
T PF13394_consen 1 VFVRTSGCNLRCSYCYNKSSWSP-KKGEEMSIEELEEIIDELKE--KGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKER 77 (119)
T ss_dssp -----S--S---TTTS-TTTSST--GGGS--HHHHHHHHHHHHH--TT----EEEEESSSGGGSTTHHHHHHHHCTSTT-
T ss_pred CCCccCCcCCCCccCCcCccCCC-ccCCcccHhHHHHHHHHHHh--cCCceEEEEEECCCCccccCHHHHHHHHHHHHhh
Confidence 57888999999999996443221 11111222333333332111 12234679999999996 5677788888887776
Q ss_pred CCCCCCcEEEEeeCCCCCCHHH
Q psy2383 98 LLFKKNISITLEANPSTFEIEK 119 (391)
Q Consensus 98 ~~~~~~~eit~e~~p~~l~~e~ 119 (391)
. +...+++++|.....+..
T Consensus 78 ~---~~~~i~i~TNg~~~~~~~ 96 (119)
T PF13394_consen 78 G---PEIKIRIETNGTLPTEEK 96 (119)
T ss_dssp -------EEEEEE-STTHHHHH
T ss_pred C---CCceEEEEeCCeeccccc
Confidence 4 457899999865444433
No 146
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.28 E-value=6.3e-05 Score=71.60 Aligned_cols=151 Identities=12% Similarity=0.076 Sum_probs=106.3
Q ss_pred HHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCE
Q psy2383 51 EALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINR 130 (391)
Q Consensus 51 ~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~r 130 (391)
+.+.+++......+ ......|.|.||.|++ .++.+.++++.+++. +..+++++|.. +..+.++.+.. .++.
T Consensus 109 eel~~~i~~~~~~~-~~~~~~V~~sGGEPll-~~~~l~~l~~~~k~~-----g~~~~i~TnG~-~~~~~~~~ll~-~~d~ 179 (295)
T TIGR02494 109 EEVMRVVLRDSIFY-RNSGGGVTLSGGEPLL-QPEFALALLQACHER-----GIHTAVETSGF-TPWETIEKVLP-YVDL 179 (295)
T ss_pred HHHHHHHHHHHHhc-ccCCCcEEeeCcchhc-hHHHHHHHHHHHHHc-----CCcEeeeCCCC-CCHHHHHHHHh-hCCE
Confidence 44555554332211 1124578899999986 676778889888764 24678888875 44566666654 4678
Q ss_pred EEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE--ecCCCCCCHHHHHHHHHHHHhcC--CCeEEEecc
Q psy2383 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL--IYALPNQTLSELMLDLNYAIQYS--PPHLSLYSL 205 (391)
Q Consensus 131 isiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl--I~GlPgqt~e~~~~~l~~~~~l~--~~~is~y~l 205 (391)
+.+.+.+.+++..+++.. .+.+.+.+.++.+.+. .+ +.+-. |-|+ ..+.+++.+.++++.+++ +..+.+.++
T Consensus 180 ~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~-~~i~~~~v~~~-n~~~~ei~~l~~~~~~~~~~v~~v~l~~~ 256 (295)
T TIGR02494 180 FLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKN-VVIRIPVIPGF-NDSEENIEAIAAFLRKLEPGVDEIDLLPY 256 (295)
T ss_pred EEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCc-EEEEeceeCCc-CCCHHHHHHHHHHHHHhccCCceEEecCC
Confidence 899999999999888744 4678888999998887 54 44443 4333 357789999999999998 678888888
Q ss_pred cccCCCcc
Q psy2383 206 TIEPNTYF 213 (391)
Q Consensus 206 ~~~pgT~l 213 (391)
.+.+.+++
T Consensus 257 ~~~g~~~~ 264 (295)
T TIGR02494 257 HRLGENKY 264 (295)
T ss_pred CchhHHHH
Confidence 87665543
No 147
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.25 E-value=4.5e-05 Score=70.25 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=83.3
Q ss_pred eeEeccCCCCCCCCCCCCCcccccC-c-ccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHH
Q psy2383 18 SLYIHFPWCIKKCPYCDFHSYEIKK-N-ISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 18 ~lYihiPfC~~~C~yC~~~~~~~~~-~-~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~ 95 (391)
++.|...-|+.+|.||+........ . ....-..+.+++++.... ...+..|.|.||.|.+- ..+.++++.++
T Consensus 24 ~~FvR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~----~~~~~~V~lTGGEPll~--~~l~~li~~l~ 97 (238)
T TIGR03365 24 TMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALG----GGTPLHVSLSGGNPALQ--KPLGELIDLGK 97 (238)
T ss_pred EEEEEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHh----CCCCCeEEEeCCchhhh--HhHHHHHHHHH
Confidence 4555556699999999864322111 1 111123455555555432 22468899999999873 37889999887
Q ss_pred HhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEec
Q psy2383 96 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIY 175 (391)
Q Consensus 96 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~ 175 (391)
+. +..+++|+|...+++ . ++. ++.+++.+-..+. +.....+...++++.+++. ..+.+-+++
T Consensus 98 ~~-----g~~v~leTNGtl~~~-~---l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~~-~~~~vK~Vv 159 (238)
T TIGR03365 98 AK-----GYRFALETQGSVWQD-W---FRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDDG-PQTSLKVVV 159 (238)
T ss_pred HC-----CCCEEEECCCCCcHH-H---Hhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhhc-CceEEEEEE
Confidence 64 357899999865443 2 333 4578888776554 2233466667777777653 235555666
Q ss_pred C
Q psy2383 176 A 176 (391)
Q Consensus 176 G 176 (391)
+
T Consensus 160 ~ 160 (238)
T TIGR03365 160 F 160 (238)
T ss_pred C
Confidence 6
No 148
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.17 E-value=0.00043 Score=66.09 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=119.7
Q ss_pred CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCccc---CCCeeEEEEeC-CCCCCCCHHHHHHHHHHHHHhCC--
Q psy2383 26 CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIIL---NRKIHTIFIGG-GTPSLISDTGLDYLLKNIKKLLL-- 99 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~---~~~~~~i~~gG-Gtps~l~~~~l~~ll~~i~~~~~-- 99 (391)
|+..|+||+-...... +.-....++.++....+.++ +.++..|.|-| |.|.+ +-+.....++.+....+
T Consensus 111 C~~~C~FCaTg~~G~~----RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~-N~dnV~~a~~i~~~~~G~~ 185 (349)
T COG0820 111 CPVGCTFCATGQGGLN----RNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLL-NLDNVVKALEIINDDEGLG 185 (349)
T ss_pred cCCCCCeeccccccce----eccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhh-hHHHHHHHHHhhcCccccc
Confidence 9999999986544322 22233445555554333332 34566665555 88864 66666666666664433
Q ss_pred CCCCcEEEEeeCCCCCCHHHHHHhH-HCCCCEEEEecCCCCHHHHHHh---CCCCCHHHHHHHHHHHHhh-cccce--Ee
Q psy2383 100 FKKNISITLEANPSTFEIEKFHSYS-IIGINRLSIGIQSFNNKYLNIL---GRTHDSKQAKYAIEIAKQY-FNNFN--LD 172 (391)
Q Consensus 100 ~~~~~eit~e~~p~~l~~e~l~~l~-~~Gv~risiGvqS~~~~~l~~l---~R~~~~~~~~~~i~~~~~~-~~~v~--~d 172 (391)
++. ..+|+.+.. +.+...+... ..++ .+.+.+.+.+++.++.+ ++..+.++..++++.-.+. -..|. .-
T Consensus 186 ls~-R~iTvSTsG--i~~~I~~l~~~~~~v-~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~ 261 (349)
T COG0820 186 LSK-RRITVSTSG--IVPRIRKLADEQLGV-ALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYV 261 (349)
T ss_pred ccc-eEEEEecCC--CchhHHHHHhhcCCe-EEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEee
Confidence 332 456776543 5554444442 3344 89999999999999877 6677888777777665544 22233 33
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
|+=|.- .+.++..+-++.+.... -||.+-|+.|.||+.+ +. |+.+.. +.| .+.|.++|+.-
T Consensus 262 Ll~~VN-D~~e~A~~L~~ll~~~~-~~VNLIP~Np~~~~~y-~r-----~~~~~i-~~F---~~~L~~~gv~~ 322 (349)
T COG0820 262 LLDGVN-DSLEHAKELAKLLKGIP-CKVNLIPYNPVPGSDY-ER-----SSKERI-RKF---LKILKKAGVLV 322 (349)
T ss_pred eccccc-CCHHHHHHHHHHhcCCC-ceEEEeecCCCCCCCc-cC-----CcHHHH-HHH---HHHHHhCCeeE
Confidence 555553 34666665555555443 4999999999999883 32 333333 333 35666777653
No 149
>KOG2672|consensus
Probab=98.13 E-value=2.4e-05 Score=71.13 Aligned_cols=172 Identities=11% Similarity=0.123 Sum_probs=116.6
Q ss_pred eEeccCCCCCCCCCCCCCcccccCc-ccHHHHHHHHHHHHHhccCcccCCCeeEEEEe----CCCCCCCCHHHHHHHHHH
Q psy2383 19 LYIHFPWCIKKCPYCDFHSYEIKKN-ISEKKYLEALLIDVELSLPIILNRKIHTIFIG----GGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 19 lYihiPfC~~~C~yC~~~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~g----GGtps~l~~~~l~~ll~~ 93 (391)
+-+-=--|...|.||+......... .+. -.+...+.|..+ +++.|.+. ++-|. .....|++.+..
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~--EPeNTAeAIasW-------gl~YiVlTSVDRDDlpD-gGa~HiAkTVq~ 183 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPN--EPENTAEAIASW-------GLDYIVLTSVDRDDLPD-GGANHIAKTVQK 183 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCC--CcccHHHHHHHc-------CCCeEEEEecccccCcC-cchHHHHHHHHH
Confidence 3333345999999999755433211 111 112233344432 23444332 12222 246688898998
Q ss_pred HHHhCCCCCCcEEEEee-CCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcc--cc
Q psy2383 94 IKKLLLFKKNISITLEA-NPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN--NF 169 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~-~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~--~v 169 (391)
|++.. -++-+|+ .|+.- +-+.++.++..|.+-..-.|||...-.----.|+.+..|-..+++.+++.-+ -.
T Consensus 184 iK~k~-----p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~lit 258 (360)
T KOG2672|consen 184 IKEKA-----PEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLIT 258 (360)
T ss_pred HHhhC-----cccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCcee
Confidence 88763 3678887 56543 6788999999999988888888654443344577788999999999998821 13
Q ss_pred eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 170 NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 170 ~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
...+|.|+ |+|.+++.++++.+.+.++|-+++-.++
T Consensus 259 ktsiMlgl-getdeei~~tl~dLr~~~vdv~t~gqym 294 (360)
T KOG2672|consen 259 KTSIMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYM 294 (360)
T ss_pred hhhhhhcc-CCCHHHHHHHHHHHHHcCCcEEeccccc
Confidence 46678898 9999999999999999999988777665
No 150
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=98.11 E-value=0.00074 Score=61.01 Aligned_cols=182 Identities=10% Similarity=0.092 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC
Q psy2383 49 YLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGI 128 (391)
Q Consensus 49 y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv 128 (391)
.++.|++++......+.. .=..|-|.||.|++ .++.+.++++.+++. +..+.+++|. .++.+.++.+.. -+
T Consensus 20 t~eel~~~~~~~~~f~~~-sggGVt~SGGEPll-q~~fl~~l~~~~k~~-----gi~~~leTnG-~~~~~~~~~l~~-~~ 90 (213)
T PRK10076 20 TLDALEREVMKDDIFFRT-SGGGVTLSGGEVLM-QAEFATRFLQRLRLW-----GVSCAIETAG-DAPASKLLPLAK-LC 90 (213)
T ss_pred CHHHHHHHHHhhhHhhcC-CCCEEEEeCchHHc-CHHHHHHHHHHHHHc-----CCCEEEECCC-CCCHHHHHHHHH-hc
Confidence 467777777765433321 12468999999987 577888999888763 4578899886 467777777765 48
Q ss_pred CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 129 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 129 ~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+.+.+-+=++|++..+++.. .+.+.+.+.++.+.+. .. .+.+=+|=|+ ..+.+++++..+++.+++++.+.+-++.
T Consensus 91 D~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~~~~~~llpyh 168 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLGIKQIHLLPFH 168 (213)
T ss_pred CEEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEecCC
Confidence 89999999999999887754 5678888989888887 43 1445455443 3678999999999999988888777776
Q ss_pred ccCCCcc---c---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 207 IEPNTYF---F---KYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 207 ~~pgT~l---~---~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+.--... . +......|+.+.. ..+.+.+.+.|...
T Consensus 169 ~~g~~Ky~~lg~~y~~~~~~~~~~~~l----~~~~~~~~~~gl~~ 209 (213)
T PRK10076 169 QYGEPKYRLLGKTWSMKEVPAPSSADV----ATMREMAERAGFQV 209 (213)
T ss_pred ccchhHHHHcCCcCccCCCCCcCHHHH----HHHHHHHHHcCCeE
Confidence 5422111 1 1111123444332 33456677778764
No 151
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00051 Score=65.30 Aligned_cols=198 Identities=15% Similarity=0.136 Sum_probs=130.7
Q ss_pred ceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHH
Q psy2383 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKK 96 (391)
Q Consensus 17 ~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~ 96 (391)
..|-+=.-.|+..|.||--....+..... ...+.+-+-++..+ ....+..|.|.||.|-.++++.|+.|++.|++
T Consensus 112 rvLll~t~~C~vyCRyCfRr~~~~~~~~~--~~~~~~~~al~YIa---~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~ 186 (369)
T COG1509 112 RVLLLVTGVCAVYCRYCFRRRFVGQDNQG--FNKEEWDKALDYIA---AHPEIREVLLSGGDPLSLSDKKLEWLLKRLRA 186 (369)
T ss_pred eEEEEecCcccceeeeccccccccccccc--CCHHHHHHHHHHHH---cCchhheEEecCCCccccCHHHHHHHHHHHhc
Confidence 34555556799999999655444332111 01112222222222 23468999999999999999999999999987
Q ss_pred hCCCCCCcEEEEee-----CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccce
Q psy2383 97 LLLFKKNISITLEA-----NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFN 170 (391)
Q Consensus 97 ~~~~~~~~eit~e~-----~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~ 170 (391)
. ....-+.+-+ .|..+|++..+.|++.+. .|.+-..-=.+.. -..++.+|++.++++ +.-.|
T Consensus 187 I---pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~-~v~~~tH~NHp~E--------it~e~~~A~~~L~~aGv~l~N 254 (369)
T COG1509 187 I---PHVKIIRIGTRLPVVLPQRITDELCEILGKSRK-PVWLVTHFNHPNE--------ITPEAREACAKLRDAGVPLLN 254 (369)
T ss_pred C---CceeEEEeecccceechhhccHHHHHHHhccCc-eEEEEcccCChhh--------cCHHHHHHHHHHHHcCceeec
Confidence 4 2223444443 588899999999988653 4444332212211 124588899999998 54222
Q ss_pred -EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 171 -LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 171 -~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
.-|+=|. ..+.+.+.+-++.+...++.---+|.+.+.+|+.=++ .+.++..+++...+..+
T Consensus 255 QsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr------~~i~~~~~i~~~lr~~~ 316 (369)
T COG1509 255 QSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR------VPIAEGLQIVEELRGRT 316 (369)
T ss_pred chheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee------ccHHHHHHHHHHHHHhC
Confidence 2266777 7899999999999999998777788888888876433 23456666666655554
No 152
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.01 E-value=0.00014 Score=67.85 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=107.4
Q ss_pred CCCCCCCCCCCCCcccccCcc--cHHH---HHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNI--SEKK---YLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLL 98 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~--~~~~---y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~ 98 (391)
--|+..|.||..+........ ...+ ..+.+++|+... + ..-+-+.||.|.+ .-+...++++.+++.|
T Consensus 36 G~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~----~---a~GasiTGGdPl~-~ieR~~~~ir~LK~ef 107 (353)
T COG2108 36 GLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLM----D---ALGASITGGDPLL-EIERTVEYIRLLKDEF 107 (353)
T ss_pred cccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHh----c---cccccccCCChHH-HHHHHHHHHHHHHHhh
Confidence 469999999987655431110 0112 234555555443 1 1334566888865 3344455556666665
Q ss_pred CCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCC
Q psy2383 99 LFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALP 178 (391)
Q Consensus 99 ~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlP 178 (391)
+ .+.-+.+.+++...+++.++.|.++|++-|-+-.-..+. ...+...+.+..++++..++.+.+ =.+|
T Consensus 108 G--~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~---------~~~e~~i~~l~~A~~~g~dvG~Ei-Paip 175 (353)
T COG2108 108 G--EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS---------KSSEKYIENLKIAKKYGMDVGVEI-PAIP 175 (353)
T ss_pred c--cceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccc---------cccHHHHHHHHHHHHhCccceeec-CCCc
Confidence 4 456788899999999999999999999988776521111 234567788888888843477754 4567
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeccccc
Q psy2383 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
|. .+.+.+-++.+.+.+.+.+.+.-|.+-
T Consensus 176 g~-e~~i~e~~~~~~~~~~~FlNiNELE~s 204 (353)
T COG2108 176 GE-EEAILEFAKALDENGLDFLNINELEFS 204 (353)
T ss_pred ch-HHHHHHHHHHHHhcccceeeeeeeeec
Confidence 64 344567778888899999988887653
No 153
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.95 E-value=0.00015 Score=71.29 Aligned_cols=116 Identities=9% Similarity=0.092 Sum_probs=86.9
Q ss_pred CCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCH-HHHHHHHHH
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTL-SELMLDLNY 191 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~-e~~~~~l~~ 191 (391)
.++++.++.+.+.++..+.+.|+|.||+++++|=+.-...++.+.++++.++ +. +++.++. .||-+. +++.+|++.
T Consensus 125 Nl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~-~h~qiVl-cPGiNDg~~L~~Ti~d 202 (433)
T TIGR03279 125 NLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQ-LHAQVVV-CPGINDGKHLERTLRD 202 (433)
T ss_pred CCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCe-EEEEEEE-cCCcCCHHHHHHHHHH
Confidence 6899999999999999999999999999998887677889999999999999 87 8887765 699866 799999999
Q ss_pred HHhc----CC--CeEEEecccccCCCcccCCC-CCCCCCHHHHHHHHHHH
Q psy2383 192 AIQY----SP--PHLSLYSLTIEPNTYFFKYP-PLSMPSNDENAVMQDKI 234 (391)
Q Consensus 192 ~~~l----~~--~~is~y~l~~~pgT~l~~~~-~~~~p~~~~~~~~~~~~ 234 (391)
+.++ .| .++++-|.- =|.+.+.. +..+.+.++..+..+.+
T Consensus 203 L~~~~~~~~P~v~S~avVPVG---lTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 203 LAQFHDGDWPTVLSVAVVPVG---LTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHhhcccCCCceeEEEEEccc---cccCCCCCCCCccCCHHHHHHHHHHH
Confidence 9998 33 344444432 24332221 22345555555554443
No 154
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=97.59 E-value=0.00018 Score=60.21 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=50.5
Q ss_pred CceeEeccCCCCCCCCCCCCCcccccC--cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCC-CCHHHHHHHHH
Q psy2383 16 PLSLYIHFPWCIKKCPYCDFHSYEIKK--NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSL-ISDTGLDYLLK 92 (391)
Q Consensus 16 ~~~lYihiPfC~~~C~yC~~~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~-l~~~~l~~ll~ 92 (391)
++.+-+...-|+.+|.||......... .......++.+++++. ..++..|.|.||.|.+ -..+.+.++++
T Consensus 5 g~~~~~~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~-------~~~~~~i~l~GGEPll~~~~~~l~~i~~ 77 (139)
T PF13353_consen 5 GIRVVLFTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELK-------NYGIKGIVLTGGEPLLHENYDELLEILK 77 (139)
T ss_dssp SCEEEEEEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHC-------CCCCCEEEEECSTGGGHHSHHHHHHHHH
T ss_pred CEEEEEEcCcccccCcCcCCcccCcccccccccchhhhhhhhHHh-------cCCceEEEEcCCCeeeeccHhHHHHHHH
Confidence 334434466799999999754433211 1122233333333332 3457889999999976 25678899999
Q ss_pred HHHHhCCCCCCcEEEEeeCCCCCCHH
Q psy2383 93 NIKKLLLFKKNISITLEANPSTFEIE 118 (391)
Q Consensus 93 ~i~~~~~~~~~~eit~e~~p~~l~~e 118 (391)
.+++.+. ..+.+..|...+++.
T Consensus 78 ~~k~~~~----~~~~~~tng~~~~~~ 99 (139)
T PF13353_consen 78 YIKEKFP----KKIIILTNGYTLDEL 99 (139)
T ss_dssp HHHHTT-----SEEEEEETT--HHHH
T ss_pred HHHHhCC----CCeEEEECCCchhHH
Confidence 9998754 366777787666544
No 155
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=97.45 E-value=0.00069 Score=58.02 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=55.0
Q ss_pred CCccccccccCCCCCCceeEeccCCCCCCCCCCCCCccccc--CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCC
Q psy2383 1 MKYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIK--KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT 78 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~lYihiPfC~~~C~yC~~~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGt 78 (391)
|.+..+...++..-+....-|.+--|+.+|.||.-+..... +.......++.+++++.... .....|.|.||.
T Consensus 1 m~~~~~~~~~~~~GpG~r~~if~~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~~~~-----~~~~gvt~sGGE 75 (154)
T PRK11121 1 MNYHQYYPVDVVNGPGTRCTLFVSGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLNDTR-----IKRQGLSLSGGD 75 (154)
T ss_pred CeeeeeEECCeecCCCcEEEEEcCCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHHHhC-----CCCCcEEEECCC
Confidence 55555555555444555556677889999999976543211 11112334566666655321 123678889999
Q ss_pred CCCC-CHHHHHHHHHHHHHhC
Q psy2383 79 PSLI-SDTGLDYLLKNIKKLL 98 (391)
Q Consensus 79 ps~l-~~~~l~~ll~~i~~~~ 98 (391)
|.+- +.+.+.+++..+++.+
T Consensus 76 Pl~~~~~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 76 PLHPQNVPDILKLVQRVKAEC 96 (154)
T ss_pred ccchhhHHHHHHHHHHHHHHC
Confidence 9541 2356777777777654
No 156
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.40 E-value=0.0049 Score=57.46 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=104.6
Q ss_pred CeeEEEEeCCCCC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGTPS----LISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGtps----~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+|+.|-+|++.+. .. +...++++.+++.. ++..+.+-+++. .+.++.++++|+.+|.+.+-+.+....
T Consensus 32 GV~~IEvg~~~~~~~~p~~--~~~~~~i~~l~~~~---~~~~~~~l~~~~---~~~i~~a~~~g~~~i~i~~~~s~~~~~ 103 (265)
T cd03174 32 GVDSIEVGSGASPKAVPQM--EDDWEVLRAIRKLV---PNVKLQALVRNR---EKGIERALEAGVDEVRIFDSASETHSR 103 (265)
T ss_pred CCCEEEeccCcCccccccC--CCHHHHHHHHHhcc---CCcEEEEEccCc---hhhHHHHHhCCcCEEEEEEecCHHHHH
Confidence 5899999998875 21 23456666666653 245676555443 788999999999999999866554444
Q ss_pred HHhCCCC--CHHHHHHHHHHHHhh-cccceEeEecCC-CCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCC
Q psy2383 144 NILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYAL-PNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPL 219 (391)
Q Consensus 144 ~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~Gl-Pgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~ 219 (391)
..++|.. ..+.+.++++.+++. +. +.+.++.-. |..+++.+.+.++.+.+++++.|.+-...
T Consensus 104 ~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~------------- 169 (265)
T cd03174 104 KNLNKSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV------------- 169 (265)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhc-------------
Confidence 5556654 677888999999999 75 888775544 24899999999999999999988754321
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy2383 220 SMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 220 ~~p~~~~~~~~~~~~~~~L 238 (391)
....+++..+++....+.+
T Consensus 170 G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 170 GLATPEEVAELVKALREAL 188 (265)
T ss_pred CCcCHHHHHHHHHHHHHhC
Confidence 1234556666666555444
No 157
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.39 E-value=0.0082 Score=51.23 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCccccc----CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCC
Q psy2383 26 CIKKCPYCDFHSYEIK----KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 101 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~----~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~ 101 (391)
|...|.||-.+..... +......-+..=+.||. +..+.+.+-+.|+.|.+ .++.+.++++.+
T Consensus 51 Cnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~------K~~g~d~vRiSG~EP~l-~~EHvlevIeLl------- 116 (228)
T COG5014 51 CNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEIS------KKRGCDLVRISGAEPIL-GREHVLEVIELL------- 116 (228)
T ss_pred cceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHH------HhcCCcEEEeeCCCccc-cHHHHHHHHHhc-------
Confidence 9999999964322211 11111222222224443 23467889999999987 466777777665
Q ss_pred CCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHH---HHHHHHHHhh-cccceEeEec
Q psy2383 102 KNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQA---KYAIEIAKQY-FNNFNLDLIY 175 (391)
Q Consensus 102 ~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~---~~~i~~~~~~-~~~v~~dlI~ 175 (391)
++-.+-+|+|.-.+ |+...+.|...----|-+.+-..||+...+|.- .+.+-+ .++++.+.+. .. +..-.++
T Consensus 117 ~~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~-asp~~F~~QL~aLr~L~~~g~r-f~pA~~~ 194 (228)
T COG5014 117 VNNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITG-ASPEYFRYQLKALRHLHGKGHR-FWPAVVY 194 (228)
T ss_pred cCceEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhc-CChHHHHHHHHHHHHHHhcCce-eeehhhh
Confidence 24578999998766 899999887643335667778999999988852 333333 4555555555 32 5555666
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy2383 176 ALPNQTLSELMLDLNYAI 193 (391)
Q Consensus 176 GlPgqt~e~~~~~l~~~~ 193 (391)
++- .|+..+.|...+
T Consensus 195 ~f~---~Ed~~k~Lak~L 209 (228)
T COG5014 195 DFF---REDGLKELAKRL 209 (228)
T ss_pred ccc---hhhhHHHHHHHh
Confidence 662 344444344433
No 158
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=97.28 E-value=0.0024 Score=54.22 Aligned_cols=103 Identities=18% Similarity=0.103 Sum_probs=64.4
Q ss_pred CceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHH
Q psy2383 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIK 95 (391)
Q Consensus 16 ~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~ 95 (391)
.+++=|.+.-|+.+|.||+.+....... ...-..+.+.++|+.... .+..|.|.||. +..+.+.++++.++
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~~~~~-g~~lt~eel~~~I~~~~~-----~~~gVt~SGGE---l~~~~l~~ll~~lk 85 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESWHLSE-GTKLTPEYLTKTLDKYRS-----LISCVLFLGGE---WNREALLSLLKIFK 85 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHcCCCC-CcCCCHHHHHHHHHHhCC-----CCCEEEEechh---cCHHHHHHHHHHHH
Confidence 3456666778999999998765432110 111234556666665432 24689999998 56778999999988
Q ss_pred HhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 96 KLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 96 ~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+. +..+.++++. .-++..+.+.+ -++-+.+|.
T Consensus 86 ~~-----Gl~i~l~Tg~--~~~~~~~~il~-~iD~l~~g~ 117 (147)
T TIGR02826 86 EK-----GLKTCLYTGL--EPKDIPLELVQ-HLDYLKTGR 117 (147)
T ss_pred HC-----CCCEEEECCC--CCHHHHHHHHH-hCCEEEECh
Confidence 75 3567888862 23233333322 267777775
No 159
>KOG2876|consensus
Probab=97.22 E-value=0.00022 Score=64.71 Aligned_cols=182 Identities=14% Similarity=0.217 Sum_probs=123.8
Q ss_pred eeEeccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 18 SLYIHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 18 ~lYihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
.-|+.|.- |..+|.||....... -.+..+.+ ++ .|+-..++.+....++.+-+-||.|++- .++..+...+
T Consensus 10 htyLrislte~cnlrc~ycMpsegv~--l~pk~~~l-av-~eilrl~~~F~~qgv~knrLtggeptIr--~di~~i~~g~ 83 (323)
T KOG2876|consen 10 HTYLRISLTEKCNLRCQYCMPSEGVP--LKPKRKLL-AV-SEILRLAGLFAPQGVDKNRLTGGEPLIR--QDIVPIVAGL 83 (323)
T ss_pred hhhhhhhhhhccccccceechhcCCc--Cccchhhc-ch-hhhHHhhhhhhHhhhhhhhhcCCCCccc--ccccchhhhh
Confidence 34777765 999999998654432 12222322 22 2343344555556788899999999985 4566666665
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc--cceE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN--NFNL 171 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~--~v~~ 171 (391)
.+. +...++.++.|-- +....+-.+.++|.+.+.+.+.+..++-...+-|......+...++.+.+. .. .+++
T Consensus 84 ~~l---~gLks~~ITtng~-vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~ 159 (323)
T KOG2876|consen 84 SSL---PGLKSIGITTNGL-VLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNC 159 (323)
T ss_pred hcc---cchhhhceeccch-hhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceee
Confidence 554 3334666766543 566788889999999999999999999999999999999999999999977 32 3677
Q ss_pred eEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcc
Q psy2383 172 DLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYF 213 (391)
Q Consensus 172 dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 213 (391)
-+|=|+-|.-.-| +-.+-+.+|-.+.+-.+++.-|-.+
T Consensus 160 v~~k~~n~~ev~D----fv~~tr~~p~DVrfIe~mpf~gn~~ 197 (323)
T KOG2876|consen 160 VVMKGLNEDEVFD----FVLLTRMRPLDVRFIEFMPFDGNKW 197 (323)
T ss_pred EEEeccCCCcccc----eeeecCCCCcceEEEEecccCCCcc
Confidence 7777775533222 2223344555566777777766543
No 160
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=97.20 E-value=0.003 Score=54.09 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=51.8
Q ss_pred ceeEeccCCCCCCCCCCCCCcccc--cCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCC-CHHHHHHHHHH
Q psy2383 17 LSLYIHFPWCIKKCPYCDFHSYEI--KKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLI-SDTGLDYLLKN 93 (391)
Q Consensus 17 ~~lYihiPfC~~~C~yC~~~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l-~~~~l~~ll~~ 93 (391)
+..=|.+.-|+.+|.||..+.... .+.......++.+++++.... .+..|.|.||.|.+- +.+.+.+++..
T Consensus 16 ~r~~if~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~------~~~gVt~sGGEPllq~~~~~l~~ll~~ 89 (154)
T TIGR02491 16 IRVSLFVAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP------LIDGLTLSGGDPLYPRNVEELIELVKK 89 (154)
T ss_pred cEEEEEECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC------CcCeEEEeChhhCCCCCHHHHHHHHHH
Confidence 333344567999999998654422 122333455677777775431 256799999999874 34789999999
Q ss_pred HHHhCCC
Q psy2383 94 IKKLLLF 100 (391)
Q Consensus 94 i~~~~~~ 100 (391)
+++.+++
T Consensus 90 ~k~~~~~ 96 (154)
T TIGR02491 90 IKAEFPE 96 (154)
T ss_pred HHHhCCC
Confidence 9876543
No 161
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0016 Score=58.77 Aligned_cols=84 Identities=27% Similarity=0.388 Sum_probs=56.8
Q ss_pred ceeEeccCCCCCCCCCCCCCccccc--CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHH
Q psy2383 17 LSLYIHFPWCIKKCPYCDFHSYEIK--KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNI 94 (391)
Q Consensus 17 ~~lYihiPfC~~~C~yC~~~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i 94 (391)
.+++|..--|+.+|.+|+-...... +.......++.|+++++... .....|-+.||.| + -...+..|++.+
T Consensus 23 ~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-----~~~~~V~lTGGEP-~-~~~~l~~Ll~~l 95 (212)
T COG0602 23 PSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-----YKARGVSLTGGEP-L-LQPNLLELLELL 95 (212)
T ss_pred eeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-----CCcceEEEeCCcC-C-CcccHHHHHHHH
Confidence 4788888889999999995422211 01123345677777776532 1245899999999 3 344688999998
Q ss_pred HHhCCCCCCcEEEEeeCC
Q psy2383 95 KKLLLFKKNISITLEANP 112 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p 112 (391)
++. +.++.+|+|-
T Consensus 96 ~~~-----g~~~~lETng 108 (212)
T COG0602 96 KRL-----GFRIALETNG 108 (212)
T ss_pred HhC-----CceEEecCCC
Confidence 864 3578888764
No 162
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=96.86 E-value=0.062 Score=49.88 Aligned_cols=199 Identities=12% Similarity=0.111 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCCCccccc--CcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIK--KNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFK 101 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~ 101 (391)
-.|.++|-||.-.-+... +.....+++..++.+.+.. +.+.|-|.||.|+- .+-.++++++.. .
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~-------GakNvN~Vgg~Ptp----~lp~Ile~l~~~---~ 191 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRH-------GAKNVNFVGGDPTP----HLPFILEALRYA---S 191 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHh-------cCcceeecCCCCCC----chHHHHHHHHHH---h
Confidence 349999999975433322 3344566777777776543 46778888988875 233444444432 1
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEe-cCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhh-cccceEeEecCCC
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIG-IQSFNNKYLNILGRTH-DSKQAKYAIEIAKQY-FNNFNLDLIYALP 178 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiG-vqS~~~~~l~~l~R~~-~~~~~~~~i~~~~~~-~~~v~~dlI~GlP 178 (391)
..+.+--.+|- .+|.|.++.|. |+-.|-++ +-=+|++--.+.-+-. -++-+.+++..+.+. ..-+-=. .-+|
T Consensus 192 ~~iPvvwNSnm-Y~s~E~l~lL~--gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRH--LVlP 266 (335)
T COG1313 192 ENIPVVWNSNM-YMSEETLKLLD--GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRH--LVLP 266 (335)
T ss_pred cCCCEEEecCC-ccCHHHHHHhh--ccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEE--EecC
Confidence 12333333343 57999999984 77777776 4455777766665544 345566666666665 2111112 2379
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC---C-CCCCCHHHHHHHHHHHHHHHHHCCCceec
Q psy2383 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP---P-LSMPSNDENAVMQDKITSLLKNNYYKNYE 247 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~---~-~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye 247 (391)
|.-..--..-++++.+.-++++-+.-..- -.|-++.. + .+.+..+ -++.|.++..+.|+....
T Consensus 267 ghlecCTkpI~~wiae~~g~~~~vNiM~Q--Y~P~ykA~eypeI~R~lt~e----E~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 267 GHLECCTKPILRWIAENLGNDVRVNIMFQ--YRPEYKAEEYPEINRRLTRE----EYEKALEYAEKLGLTNIL 333 (335)
T ss_pred CchhhccHHHHHHHHHhCCCCeeEEehhh--ccchhhhhhchhhcccCCHH----HHHHHHHHHHHcCCceee
Confidence 86555467788999988776665543211 11222221 1 1233333 345666777788887643
No 163
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.67 E-value=0.0082 Score=44.93 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=42.5
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i 384 (391)
..+.....+....+.+...+..-|..|++.||++.+++.+++|++|.-+++.+
T Consensus 17 ~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l~~l 69 (77)
T PF14947_consen 17 KGGAKKTEIMYKANLNYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFLEEL 69 (77)
T ss_dssp TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHHHHH
Confidence 46677788877777777778899999999999999999999999999999877
No 164
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.36 E-value=0.14 Score=47.87 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q psy2383 83 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 162 (391)
Q Consensus 83 ~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~ 162 (391)
+.+.++++....+ ++..+..-++|...+.+.++...+.|+..|.+.+ +....+.+.++++.+
T Consensus 57 ~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~------------~~~~~~~~~~~i~~a 118 (266)
T cd07944 57 DDEFLRRLLGDSK------GNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF------------HKHEFDEALPLIKAI 118 (266)
T ss_pred CHHHHHHHHhhhc------cCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec------------ccccHHHHHHHHHHH
Confidence 3455555554321 2468888889988888899999999999887765 224678899999999
Q ss_pred Hhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 163 KQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 163 ~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
++. +. +.+.++... +-+++.+.+.++.+.+.+++.|.+-
T Consensus 119 k~~G~~-v~~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 119 KEKGYE-VFFNLMAIS-GYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred HHCCCe-EEEEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 999 65 888877765 6789999999999999999987543
No 165
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=95.80 E-value=0.064 Score=52.69 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=87.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNI 145 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~ 145 (391)
+...|-|.||.||+ +++|-+|+...++. + -..|++.+|.-.+ +.+..+.|+.+|++.|-+.....+++...+
T Consensus 110 ~~~aIq~tGGEPTv--r~DL~eiv~~a~e~-g---~~hVqinTnGirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~ 183 (475)
T COG1964 110 GANAVQFTGGEPTL--RDDLIEIIKIAREE-G---YDHVQLNTNGIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWK 183 (475)
T ss_pred CCceeEecCCCccc--hhhHHHHHHHHhhc-C---ccEEEEccCceeeccCHHHHHHHHhcCCcEEEEecCCCCCCchhh
Confidence 45789999999998 67888998888774 2 2356776665544 689999999999999999999999988665
Q ss_pred hCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC-CCCHHHHHHHHHHHHhc
Q psy2383 146 LGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP-NQTLSELMLDLNYAIQY 195 (391)
Q Consensus 146 l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP-gqt~e~~~~~l~~~~~l 195 (391)
. .-++..+++.++++ .. ++-|+-++- |-+..++-.-++++...
T Consensus 184 ~-----~~eIk~alen~r~~g~~--svVLVptl~rgvNd~~lG~iirfa~~n 228 (475)
T COG1964 184 N-----HWEIKQALENCRKAGLP--SVVLVPTLIRGVNDHELGAIIRFALNN 228 (475)
T ss_pred H-----hhhhHHHHHHHHhcCCC--cEEEEeehhcccChHHHHHHHHHHHhc
Confidence 5 44666699999998 65 334454442 45677777888888853
No 166
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.62 E-value=0.097 Score=44.01 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=45.6
Q ss_pred hhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE-cCCeEEeCcchHHHHHHH
Q psy2383 330 RLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR-NNKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~-~~~~~~lT~~G~~~~~~i 384 (391)
........+.+.+..+++...+...++.|.+.|||.. ....+.||++|+.+...+
T Consensus 18 ~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~~~~~i~LT~~G~~~a~~~ 73 (142)
T PRK03902 18 EEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKRL 73 (142)
T ss_pred hcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEecCceEEECHHHHHHHHHH
Confidence 3344567778888999988888899999999999985 568999999999887665
No 167
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.30 E-value=0.48 Score=45.85 Aligned_cols=109 Identities=8% Similarity=0.091 Sum_probs=80.1
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
...+++-..|..-+.+.++...+.|++.|.+..-- ...+.+.+.++.+++. .. +.+.++.. +.-|
T Consensus 76 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~------------~e~d~~~~~i~~ak~~G~~-v~~~l~~s-~~~~ 141 (333)
T TIGR03217 76 RAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHC------------TEADVSEQHIGMARELGMD-TVGFLMMS-HMTP 141 (333)
T ss_pred CCEEEEEeccCccCHHHHHHHHHCCCCEEEEEecc------------chHHHHHHHHHHHHHcCCe-EEEEEEcc-cCCC
Confidence 46788777887778889999999999988887621 1224578899999999 65 77777776 4789
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
++.+.+.++.+.+.+++.|.+- .|. ....+++..+++...++.+
T Consensus 142 ~e~l~~~a~~~~~~Ga~~i~i~------DT~-------G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 142 PEKLAEQAKLMESYGADCVYIV------DSA-------GAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred HHHHHHHHHHHHhcCCCEEEEc------cCC-------CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999976443 221 1234556667776666554
No 168
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.98 E-value=0.84 Score=42.47 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=79.8
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+++.|=+| -|.. .+... +.+..+.+. .....+..-+++ +.+.++...+.|++.|.+.+=.-+....+.++
T Consensus 33 Gv~~iE~g--~p~~-~~~~~-e~~~~l~~~---~~~~~~~~~~r~---~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~ 102 (259)
T cd07939 33 GVDEIEVG--IPAM-GEEER-EAIRAIVAL---GLPARLIVWCRA---VKEDIEAALRCGVTAVHISIPVSDIHLAHKLG 102 (259)
T ss_pred CCCEEEEe--cCCC-CHHHH-HHHHHHHhc---CCCCEEEEeccC---CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC
Confidence 57777775 4554 33332 344555442 223555555444 46678888899999999988444444556777
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
+.. ..+.+.++++.+++. +. +.+.++..- .-+++.+.+-++.+.+.|++.|++
T Consensus 103 ~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 103 KDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDAS-RADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCC-CCCHHHHHHHHHHHHHCCCCEEEe
Confidence 542 334566777788877 54 665555442 457999999999999999998744
No 169
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.98 E-value=0.59 Score=45.33 Aligned_cols=109 Identities=8% Similarity=0.074 Sum_probs=79.8
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
+..++.-..|..-+.+.++...+.|++.|.+..-. ...+.+.+.++.+++. .. +.+.++.. +.-+
T Consensus 77 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~------------~e~~~~~~~i~~ak~~G~~-v~~~l~~a-~~~~ 142 (337)
T PRK08195 77 QAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHC------------TEADVSEQHIGLARELGMD-TVGFLMMS-HMAP 142 (337)
T ss_pred CCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEec------------chHHHHHHHHHHHHHCCCe-EEEEEEec-cCCC
Confidence 46777777787777888999999999988877521 1234578899999999 65 88878776 5789
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
++.+.+-++.+.+.+++.|.+- .|. ....++...+++..+.+.+
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i~------DT~-------G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYVV------DSA-------GALLPEDVRDRVRALRAAL 186 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEeC------CCC-------CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999976433 221 1234556667776666554
No 170
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=94.96 E-value=0.82 Score=41.73 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=82.4
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEE-----ee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITL-----EA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~-----e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
|+.+=||+||.++.+.+.+++.++..+++ + +.+.. |. -....=++.++..++.|++.|.++-=|++
T Consensus 25 ID~lKfg~Gt~~l~~~~~l~eki~la~~~-~----V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--- 96 (237)
T TIGR03849 25 ITFVKFGWGTSALIDRDIVKEKIEMYKDY-G----IKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSME--- 96 (237)
T ss_pred eeeEEecCceEeeccHHHHHHHHHHHHHc-C----CeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccC---
Confidence 78899999999999988999999988764 2 22221 11 11122356777999999999888655533
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC----CCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP----NQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP----gqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+.++..+.|+.+++. +. +-..+=.-.| -.+.+++.+.++..++.|+++|-+=
T Consensus 97 -------i~~~~~~rlI~~~~~~g~~-v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiE 154 (237)
T TIGR03849 97 -------ISLEERCNLIERAKDNGFM-VLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIE 154 (237)
T ss_pred -------CCHHHHHHHHHHHHhCCCe-EeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 4566777888899887 54 3322211122 2477889889999999999988544
No 171
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=94.95 E-value=0.17 Score=39.07 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=46.7
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~~ 387 (391)
..++....+.+.++.+...+...+..|++.|+++...+ .+.||++|+.+...+...
T Consensus 22 ~~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~~~~~~ 84 (101)
T smart00347 22 EGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEA 84 (101)
T ss_pred cCCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHHHHHHH
Confidence 45688888989898887778899999999999987644 689999999988876543
No 172
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=94.89 E-value=0.16 Score=41.13 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=51.2
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
++..+....++....+.+..+.+...+...++.|++.|||+... -.+.||++|.-+...+...
T Consensus 33 iL~~l~~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~~~~~ 102 (118)
T TIGR02337 33 ILRILAEQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYASLSPQ 102 (118)
T ss_pred HHHHHHHcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHhhHH
Confidence 33445556789999999999998777889999999999999742 3699999999999887543
No 173
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=94.66 E-value=1.2 Score=41.77 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=80.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCC----CCEEEEecCCCCHH-H
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIG----INRLSIGIQSFNNK-Y 142 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G----v~risiGvqS~~~~-~ 142 (391)
+|+.|=+| .|.. +++.. +.++.+.+.. ++.++..-+++. .+.++...++| ++.|.+-+ |.+|. .
T Consensus 33 Gv~~iEvg--~~~~-~~~~~-~~~~~l~~~~---~~~~~~~l~r~~---~~~v~~a~~~~~~~~~~~i~i~~-~~s~~~~ 101 (268)
T cd07940 33 GVDVIEAG--FPAA-SPGDF-EAVKRIAREV---LNAEICGLARAV---KKDIDAAAEALKPAKVDRIHTFI-ATSDIHL 101 (268)
T ss_pred CCCEEEEe--CCCC-CHHHH-HHHHHHHHhC---CCCEEEEEccCC---HhhHHHHHHhCCCCCCCEEEEEe-cCCHHHH
Confidence 57777765 2432 44444 4455555542 356777776654 45566666777 99888877 55554 4
Q ss_pred HHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 143 LNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 143 l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+.+++.. ..+.+.++++.+++. +. +.+..+.+ +.-+++.+.+.++.+.++|++.|++-
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~i~l~ 163 (268)
T cd07940 102 KYKLKKTREEVLERAVEAVEYAKSHGLD-VEFSAEDA-TRTDLDFLIEVVEAAIEAGATTINIP 163 (268)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEeeecC-CCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 45666543 345677788888887 54 66555544 24589999999999999999987543
No 174
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=94.61 E-value=0.068 Score=38.46 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=35.1
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcch
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFG 377 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G 377 (391)
.........+.+.++.+...+...++.|++.||++.. + ..+.||++|
T Consensus 15 ~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 15 SDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp -TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3456788899999999887888999999999999654 2 359999998
No 175
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.51 E-value=1.4 Score=41.23 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=77.9
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHH-HHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL-NIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l-~~l 146 (391)
+|+.|=+|. |.. .+ +..+..+.+.+. ... ..+..-++| +.+-++...++|++.|.+-+ +.++..+ ..+
T Consensus 35 Gv~~IEvG~--P~~-~~-~~~~~~~~l~~~-~~~--~~v~~~~r~---~~~di~~a~~~g~~~i~i~~-~~S~~~~~~~~ 103 (262)
T cd07948 35 GVDYIELTS--PAA-SP-QSRADCEAIAKL-GLK--AKILTHIRC---HMDDARIAVETGVDGVDLVF-GTSPFLREASH 103 (262)
T ss_pred CCCEEEEEC--CCC-CH-HHHHHHHHHHhC-CCC--CcEEEEecC---CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHh
Confidence 578888874 655 33 334444555432 222 344443444 56678888899999988887 4555444 455
Q ss_pred CCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 147 GRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 147 ~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
++.. ..+.+.++++.+++. +. +.+.++-.+ +-+++.+.+.++.+.+++++.|.+
T Consensus 104 ~~~~~e~~~~~~~~i~~a~~~G~~-v~~~~eda~-r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 104 GKSITEIIESAVEVIEFVKSKGIE-VRFSSEDSF-RSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeeC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5442 345567777888888 54 766664333 334788888999999999997644
No 176
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.47 E-value=0.21 Score=45.76 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=93.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHH-HHHhHHCCCCEEEEecCCCCHHHHHHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEK-FHSYSIIGINRLSIGIQSFNNKYLNIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~-l~~l~~~Gv~risiGvqS~~~~~l~~l 146 (391)
+++.|=+| .|. .+++..+.+-. +.+..+ ..++..-+++..-+-+. ++.+++.|++.+.+-+-.-+......+
T Consensus 27 Gv~~iEvg--~~~-~~~~~~~~v~~-~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~ 99 (237)
T PF00682_consen 27 GVDYIEVG--FPF-ASEDDFEQVRR-LREALP---NARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNL 99 (237)
T ss_dssp TTSEEEEE--HCT-SSHHHHHHHHH-HHHHHH---SSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHT
T ss_pred CCCEEEEc--ccc-cCHHHHHHhhh-hhhhhc---ccccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhh
Confidence 47778777 222 35555444433 333221 15666666665444444 666778999999998755555666666
Q ss_pred CCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCC
Q psy2383 147 GRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 223 (391)
Q Consensus 147 ~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~ 223 (391)
++.. ..+.+.++++.+++. .. +.+.++.. +.-+++.+.+-.+.+.+++++.|.+-- |. ....
T Consensus 100 ~~~~~~~~~~~~~~v~~ak~~g~~-v~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~i~l~D------t~-------G~~~ 164 (237)
T PF00682_consen 100 NKSREEALERIEEAVKYAKELGYE-VAFGCEDA-SRTDPEELLELAEALAEAGADIIYLAD------TV-------GIMT 164 (237)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSE-EEEEETTT-GGSSHHHHHHHHHHHHHHT-SEEEEEE------TT-------S-S-
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCc-eEeCcccc-ccccHHHHHHHHHHHHHcCCeEEEeeC------cc-------CCcC
Confidence 6432 345566777778877 54 65655544 356899999999999999999885543 21 1334
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2383 224 NDENAVMQDKITSLLKN 240 (391)
Q Consensus 224 ~~~~~~~~~~~~~~L~~ 240 (391)
++...+++..+.+.+.+
T Consensus 165 P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 165 PEDVAELVRALREALPD 181 (237)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhccC
Confidence 56667777766666554
No 177
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=94.47 E-value=0.18 Score=45.46 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=49.9
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----CCeEEeCcchHHHHHHHHHHc
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----NKNIKPTSFGRYFLNDLQQIF 388 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~~~~~lT~~G~~~~~~i~~~f 388 (391)
.+.-..++..+.+.+..+.+...+...++.|++.||++.. +..++||++|+-+...+..++
T Consensus 15 ~l~~~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll~~~~~d~ 79 (217)
T PRK14165 15 AVNNTVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVLYNEYADY 79 (217)
T ss_pred ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHHHHHHHHH
Confidence 3443446778899999999888888999999999999875 678999999999887776543
No 178
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.36 E-value=0.27 Score=41.30 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=47.6
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
+....|+...++.+..+.+...+-..++.|++.|||+... -.+.||++|+-+...+.
T Consensus 49 l~~~~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~~~~ 112 (144)
T PRK11512 49 IRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCH 112 (144)
T ss_pred HHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHHHHH
Confidence 4445789999999999999888889999999999998752 35889999999877653
No 179
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.34 E-value=0.37 Score=41.03 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=50.9
Q ss_pred HHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHHH
Q psy2383 323 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 323 e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i~ 385 (391)
+.++..+....++....+.+.++++...+...++.|++.|++... +..+.||++|..+...+.
T Consensus 40 ~~I~~~l~~~~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~~~~v~LT~~G~~l~~~~~ 103 (152)
T PRK11050 40 ELIADLIAEVGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRPYRGVFLTPEGEKLAQESR 103 (152)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCceEECchHHHHHHHHH
Confidence 344434444567889999999999988889999999999999875 468999999999877664
No 180
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=94.24 E-value=0.8 Score=43.07 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=78.8
Q ss_pred CCeeEEEEeCCC-----CCCCCHHHHHHHHHHHHHhCCCCCCcEEEE----------eeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 67 RKIHTIFIGGGT-----PSLISDTGLDYLLKNIKKLLLFKKNISITL----------EANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 67 ~~~~~i~~gGGt-----ps~l~~~~l~~ll~~i~~~~~~~~~~eit~----------e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
.+++.|=+|++. +-.++.+.. +.++.+++..+ +..+.. +..|.++.++.++...+.|+..|
T Consensus 33 ~Gv~~iE~G~~a~~~~~~~~~~~~~~-e~i~~~~~~~~---~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~i 108 (275)
T cd07937 33 AGFFSLEVWGGATFDVCMRFLNEDPW-ERLRELRKAMP---NTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIF 108 (275)
T ss_pred cCCCEEEccCCcchhhhccccCCCHH-HHHHHHHHhCC---CCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEE
Confidence 368888888643 112333332 33344444322 223332 33466678889999999999988
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe--cCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI--YALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI--~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+.+-.-+ .+.+.++++.+++. .. +.+.++ .+ +.-+++.+.+.++.+.+.|++.|++-
T Consensus 109 ri~~~~~~------------~~~~~~~i~~ak~~G~~-v~~~i~~~~~-~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 109 RIFDALND------------VRNLEVAIKAVKKAGKH-VEGAICYTGS-PVHTLEYYVKLAKELEDMGADSICIK 169 (275)
T ss_pred EEeecCCh------------HHHHHHHHHHHHHCCCe-EEEEEEecCC-CCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 88663322 56788999999988 54 544443 34 67889999999999999999987554
No 181
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.96 E-value=0.32 Score=40.77 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=46.3
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
.|.....+.+.++.+...+-..++.|++.|||+... -.+.||++|.-+...+..
T Consensus 45 ~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 105 (144)
T PRK03573 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISEVEA 105 (144)
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHHHHH
Confidence 467889999999999888889999999999999753 368999999998887654
No 182
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=93.86 E-value=0.12 Score=42.05 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHH
Q psy2383 341 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 383 (391)
Q Consensus 341 ~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~ 383 (391)
.+..+.+++++.+.++.++-.||++..+|.+.||+.|+-|.+.
T Consensus 4 a~~l~~eiDdL~p~~eAaelLgf~~~~~Gdi~LT~~G~~f~~a 46 (120)
T PF09821_consen 4 ADELHLEIDDLLPIVEAAELLGFAEVEEGDIRLTPLGRRFAEA 46 (120)
T ss_pred HHHhCCcHHHHHHHHHHHHHcCCeeecCCcEEeccchHHHHHC
Confidence 3445667778899999999999999999999999999999864
No 183
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=93.81 E-value=0.22 Score=37.47 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=43.7
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----CC----eEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----NK----NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~~----~~~lT~~G~~~~~~i~~ 386 (391)
|-..+.++...+.+..|.+...+...|+.|+++|+|+.+ ++ .++||++|+-....-..
T Consensus 9 L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~ 74 (80)
T PF13601_consen 9 LYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVA 74 (80)
T ss_dssp HHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHH
Confidence 444567888999999998877788999999999999865 23 39999999987766543
No 184
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=93.81 E-value=1.1 Score=40.10 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=83.8
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHh-CCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKL-LLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~-~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
|+-|-||+||.++++.+.+++-++..++. ..+.++-..+.-+..+.-=++.++.+++.|++.|.|.=-+.
T Consensus 44 VDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i--------- 114 (258)
T COG1809 44 VDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTI--------- 114 (258)
T ss_pred eeeeeecccccccccHHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEecCCee---------
Confidence 78899999999999999999999998873 11122221221123333346899999999999888753332
Q ss_pred CCCCHHHHHHHHHHHHhh-cccceEeEecCCC----CCCHHHHHHHHHHHHhcCCCeE
Q psy2383 148 RTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP----NQTLSELMLDLNYAIQYSPPHL 200 (391)
Q Consensus 148 R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP----gqt~e~~~~~l~~~~~l~~~~i 200 (391)
..+.++-.+.|+++.+. |. +-..+=--.| -++++++.+.+...++.|.+.+
T Consensus 115 -~m~~eek~~lIe~a~d~Gf~-vlsEvGkk~~e~~~~l~~~d~~k~i~~dvdaGa~~v 170 (258)
T COG1809 115 -PMSTEEKCRLIERAVDEGFM-VLSEVGKKDPESDSALSPDDRVKLINDDVDAGAEYV 170 (258)
T ss_pred -ecchHHHHHHHHHHHhcccE-EehhhcccCcchhhhcChHHHHHHHHHHHHcchHHh
Confidence 24566777888888888 65 3333311223 3689999999999999988755
No 185
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=93.80 E-value=1.8 Score=42.41 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=85.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+|+.|=+| .|.. +++.. +.+..+.+. ....++..-+++ ..+.++...++|+..|.+-+=+.+-.....++
T Consensus 35 Gv~~IEvG--~p~~-~~~~~-e~i~~i~~~---~~~~~v~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~ 104 (363)
T TIGR02090 35 GVDVIEAG--FPIA-SEGEF-EAIKKISQE---GLNAEICSLARA---LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK 104 (363)
T ss_pred CCCEEEEe--CCCC-ChHHH-HHHHHHHhc---CCCcEEEEEccc---CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC
Confidence 56766664 5654 44443 334444432 335677766654 46778889999999888877555555556677
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
+.. ..+.+.++++.+++. +. +.+.+.-. +.-+++.+.+.++.+.+.+++.|.+-.
T Consensus 105 ~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda-~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 105 KSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDA-TRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCE-EEEEEeec-CCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 552 456677888888888 64 77766544 456799999999999999999876543
No 186
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=93.62 E-value=0.3 Score=37.79 Aligned_cols=49 Identities=27% Similarity=0.315 Sum_probs=41.5
Q ss_pred hHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHHH
Q psy2383 338 NLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~~ 386 (391)
..+.+.+|++...+...++.|++.||+.... ..+.||++|.-+...+..
T Consensus 3 ~ela~~l~is~stvs~~l~~L~~~glI~r~~~~~~~lT~~g~~~~~~~~~ 52 (96)
T smart00529 3 SEIAERLNVSPPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLR 52 (96)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCEEEcCCCceEechhHHHHHHHHHH
Confidence 4567788888778889999999999999887 599999999998877643
No 187
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.60 E-value=2 Score=42.10 Aligned_cols=122 Identities=10% Similarity=0.085 Sum_probs=80.8
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+|+.|=+| -|+. ++... +.++.+.+. .+..+++.-+++ +.+.++...++|++.|.+-+=+.+-.....++
T Consensus 36 Gv~~IEvG--~p~~-~~~~~-e~i~~i~~~---~~~~~i~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~ 105 (365)
T TIGR02660 36 GVDELEVG--IPAM-GEEER-AVIRAIVAL---GLPARLMAWCRA---RDADIEAAARCGVDAVHISIPVSDLQIEAKLR 105 (365)
T ss_pred CCCEEEEe--CCCC-CHHHH-HHHHHHHHc---CCCcEEEEEcCC---CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC
Confidence 57777765 5664 44443 344555543 223566665555 57788899999999999988444445556676
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEE
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLS 201 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is 201 (391)
+.. ..+.+.++++.+++. .. +.+.+..+ +.-+++.+.+.++.+.+.|++.|.
T Consensus 106 ~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~-~r~~~~~l~~~~~~~~~~Ga~~i~ 160 (365)
T TIGR02660 106 KDRAWVLERLARLVSFARDRGLF-VSVGGEDA-SRADPDFLVELAEVAAEAGADRFR 160 (365)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCE-EEEeecCC-CCCCHHHHHHHHHHHHHcCcCEEE
Confidence 553 234455777878877 54 66665544 345688889999999999998764
No 188
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.60 E-value=1.5 Score=41.58 Aligned_cols=106 Identities=9% Similarity=0.066 Sum_probs=72.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh
Q psy2383 88 DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY 165 (391)
Q Consensus 88 ~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~ 165 (391)
.+.+..|.+. ++..+..-+ | +.+-++...++|++.|.+.+-+.+....+.+++.. ..+.+.++++.+++.
T Consensus 61 ~e~~~~l~~~----~~~~~~~l~-~---~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~ 132 (287)
T PRK05692 61 AEVMAGIQRR----PGVTYAALT-P---NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQA 132 (287)
T ss_pred HHHHHhhhcc----CCCeEEEEe-c---CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 3455555431 234555433 3 56677888899999999987554544556666552 345578888889888
Q ss_pred -cccceEeE--ecCCCCC---CHHHHHHHHHHHHhcCCCeEEE
Q psy2383 166 -FNNFNLDL--IYALPNQ---TLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 166 -~~~v~~dl--I~GlPgq---t~e~~~~~l~~~~~l~~~~is~ 202 (391)
+. +.+.+ .+|-|.. +++.+.+.++.+.+.|++.|.+
T Consensus 133 g~~-v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (287)
T PRK05692 133 GVR-VRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL 174 (287)
T ss_pred CCE-EEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 54 54444 4576766 7889999999999999997754
No 189
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.52 E-value=2 Score=42.44 Aligned_cols=146 Identities=17% Similarity=0.097 Sum_probs=93.1
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+|+.|=+| .|.. +++.. +.++.+.+. + ....+..-++. ..+.++...++|+++|.+.+-+.+....+.++
T Consensus 39 GV~~IE~G--~p~~-~~~~~-e~i~~i~~~-~--~~~~i~~~~r~---~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~ 108 (378)
T PRK11858 39 GVDQIEAG--FPAV-SEDEK-EAIKAIAKL-G--LNASILALNRA---VKSDIDASIDCGVDAVHIFIATSDIHIKHKLK 108 (378)
T ss_pred CCCEEEEe--CCCc-ChHHH-HHHHHHHhc-C--CCeEEEEEccc---CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC
Confidence 57777665 6765 44443 344555442 2 23455554333 46678888899999999999666666777777
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN 224 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~ 224 (391)
+.. ..+.+.++++.+++. .. +.+....+- .-+++.+.+.++.+.+.|++.|.+- .|. ....+
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~-r~~~~~l~~~~~~~~~~Ga~~I~l~------DT~-------G~~~P 173 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGLY-VSFSAEDAS-RTDLDFLIEFAKAAEEAGADRVRFC------DTV-------GILDP 173 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCC-CCCHHHHHHHHHHHHhCCCCEEEEe------ccC-------CCCCH
Confidence 542 334455677777777 54 666655443 4678999999999999999987554 332 12344
Q ss_pred HHHHHHHHHHHHHH
Q psy2383 225 DENAVMQDKITSLL 238 (391)
Q Consensus 225 ~~~~~~~~~~~~~L 238 (391)
.+..+++....+.+
T Consensus 174 ~~v~~lv~~l~~~~ 187 (378)
T PRK11858 174 FTMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666665555443
No 190
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.15 Score=41.99 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=42.3
Q ss_pred hhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 330 RLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
+...|.-...|..-.| .-.+..|++|++.||+....+.=++|++|+-++|.++.+..
T Consensus 80 ~k~rG~rP~~~~~gsg---sI~RkilqqLE~~G~V~k~~~GR~ltp~GrsllD~~a~ei~ 136 (147)
T COG2238 80 RKNRGSRPEKFRKGSG---SIIRKVLQQLEKAGLVEKTPKGRVLTPKGRSLLDRIATEIK 136 (147)
T ss_pred cccCCCCchhhhcCCc---hHHHHHHHHHHHCCceeecCCCceeCccchhHHHHHHHHHH
Confidence 3344554444444332 22477899999999999999888999999999999987654
No 191
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.15 E-value=1.8 Score=45.26 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred CeeEEEEeCC-CCC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-TPS----LISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-tps----~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.+|=++|| |+- +++++.++++ +.+++.. ++..+.+-++ |+++-+..++...++|++.|.
T Consensus 39 G~~~iE~~ggatfd~~~rfl~edp~e~l-~~l~~~~---~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~ir 114 (592)
T PRK09282 39 GFWSLEVWGGATFDVCIRYLNEDPWERL-RKLKKAL---PNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFR 114 (592)
T ss_pred CCCEEEecCCccchhhcccCCccHHHHH-HHHHHhC---CCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEE
Confidence 5677766665 432 3566655554 5566553 3456666544 556667788899999999877
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE--ecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL--IYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl--I~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+-. +.|+- ..+..+++.+++. .. +...+ ..+ |-.|++.+.+.++.+.+.|++.|.+-
T Consensus 115 if~-~lnd~-----------~n~~~~i~~ak~~G~~-v~~~i~~t~~-p~~t~~~~~~~a~~l~~~Gad~I~i~ 174 (592)
T PRK09282 115 IFD-ALNDV-----------RNMEVAIKAAKKAGAH-VQGTISYTTS-PVHTIEKYVELAKELEEMGCDSICIK 174 (592)
T ss_pred EEE-ecChH-----------HHHHHHHHHHHHcCCE-EEEEEEeccC-CCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 764 33332 4677888889888 43 44333 344 88899999999999999999977543
No 192
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.14 E-value=2 Score=40.33 Aligned_cols=95 Identities=8% Similarity=0.095 Sum_probs=69.1
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC--CCHHHHHHHHHHHHhh-cccceEeEe--cCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT--HDSKQAKYAIEIAKQY-FNNFNLDLI--YAL 177 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~--~~~~~~~~~i~~~~~~-~~~v~~dlI--~Gl 177 (391)
+.+++.-+ | +.+-++...+.|+..|.+.+-+.+....+.+++. ...+.+.++++.+++. .. +.+.++ +|.
T Consensus 66 ~~~~~~~~-~---~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~-v~~~i~~~f~~ 140 (274)
T cd07938 66 GVRYSALV-P---NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLR-VRGYVSTAFGC 140 (274)
T ss_pred CCEEEEEC-C---CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeEecC
Confidence 45666654 3 5667888889999999998877666666777766 3456677888888888 43 544444 666
Q ss_pred CCC---CHHHHHHHHHHHHhcCCCeEEE
Q psy2383 178 PNQ---TLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 178 Pgq---t~e~~~~~l~~~~~l~~~~is~ 202 (391)
|-+ +++.+.+.++.+.+.|++.|.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 141 PYEGEVPPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 654 6788888899999999987754
No 193
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.14 E-value=2.1 Score=41.62 Aligned_cols=86 Identities=10% Similarity=0.068 Sum_probs=63.6
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHH-HhCCCC--CHHHHHHHHHHHHhh-cccce--EeEecCCCCC---CHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLN-ILGRTH--DSKQAKYAIEIAKQY-FNNFN--LDLIYALPNQ---TLSELM 186 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~-~l~R~~--~~~~~~~~i~~~~~~-~~~v~--~dlI~GlPgq---t~e~~~ 186 (391)
+.+-++...++|+..|.+.+ |.+|..++ .+++.. ..+.+.++++.+++. .. +. +...||.|.. +++.+.
T Consensus 123 n~~die~A~~~g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~-v~~~is~~fg~p~~~r~~~~~l~ 200 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKHSIP-VRGYVSCVVGCPIEGPVPPSKVA 200 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeeecCCccCCCCHHHHH
Confidence 67788888899999999999 66666554 455442 344455788888888 54 55 4446888866 577888
Q ss_pred HHHHHHHhcCCCeEEEe
Q psy2383 187 LDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~y 203 (391)
+.++.+.+.|++.|++-
T Consensus 201 ~~~~~~~~~Gad~I~l~ 217 (347)
T PLN02746 201 YVAKELYDMGCYEISLG 217 (347)
T ss_pred HHHHHHHHcCCCEEEec
Confidence 88899999999987554
No 194
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=92.90 E-value=0.59 Score=43.23 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+.-+.+++....+++...+.+.++.|.+.||+..+++.++||+.|..++..+-
T Consensus 25 gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv~km~ 77 (260)
T COG4742 25 GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIVEKME 77 (260)
T ss_pred CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHHHHHH
Confidence 55788999999999888899999999999999999999999999999988764
No 195
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=92.71 E-value=0.85 Score=38.92 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE-cCCeEEeCcchHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR-NNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~-~~~~~~lT~~G~~~~~~i~ 385 (391)
..+....+++..++.+..+...++.|.+.||+.. ..+.+.||++|.-....++
T Consensus 23 ~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a~~~~ 76 (154)
T COG1321 23 GFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKAKELL 76 (154)
T ss_pred CcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEecCCCeEEChhhHHHHHHHH
Confidence 3366777888899988888899999999999998 5699999999997666554
No 196
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=92.56 E-value=0.63 Score=41.01 Aligned_cols=71 Identities=15% Similarity=0.043 Sum_probs=53.5
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..+....|+....+++..+.+...+-..++.|++.|||+.. | -.+.||++|+-+.+.+..
T Consensus 42 gLt~~q~---~iL~~L~~~~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~~l~~ 118 (185)
T PRK13777 42 DLNINEH---HILWIAYHLKGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLLETME 118 (185)
T ss_pred CCCHHHH---HHHHHHHhCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 3555442 23334555678999999998888776778899999999999964 2 458899999999988754
Q ss_pred H
Q psy2383 387 I 387 (391)
Q Consensus 387 ~ 387 (391)
.
T Consensus 119 ~ 119 (185)
T PRK13777 119 E 119 (185)
T ss_pred H
Confidence 3
No 197
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=92.38 E-value=6.3 Score=36.71 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=64.6
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
+.++.+-++|.....+.++...+.|++.|.+.+ +.++ ...+.++++.+++. +. +.+.++-.. .-+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~G~~-v~~~~~~~~-~~~ 139 (263)
T cd07943 74 QAKLGVLLLPGIGTVDDLKMAADLGVDVVRVAT-HCTE-----------ADVSEQHIGAARKLGMD-VVGFLMMSH-MAS 139 (263)
T ss_pred CCEEEEEecCCccCHHHHHHHHHcCCCEEEEEe-chhh-----------HHHHHHHHHHHHHCCCe-EEEEEEecc-CCC
Confidence 467776666666667888999999999888755 3332 23578899999998 64 777765543 468
Q ss_pred HHHHHHHHHHHHhcCCCeEEE
Q psy2383 182 LSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~ 202 (391)
++.+.+.++.+.+.|++.|++
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 140 PEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999998753
No 198
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=92.36 E-value=0.22 Score=42.56 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCeEEcC--CeEEeCcchHHHHHHHHHHcc
Q psy2383 351 IESKLKNAEKLGLLKRNN--KNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~~--~~~~lT~~G~~~~~~i~~~f~ 389 (391)
++..|++|++.||++.+. +.=+||++|+-++|.|+....
T Consensus 122 iR~~LQqLE~~glVek~~~~~GR~lT~~Gr~~LD~iA~~v~ 162 (169)
T PTZ00095 122 LRWICQQLEKLGLVEQGPKKKGRRLTRKGCNFANAFARQVT 162 (169)
T ss_pred HHHHHHHHHHCCCEEecCCCCCCEECHhHHHHHHHHHHHHH
Confidence 578899999999999772 344999999999999987653
No 199
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.21 E-value=2.2 Score=43.47 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCeeEEEEeCC-CCCC----CCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEE
Q psy2383 67 RKIHTIFIGGG-TPSL----ISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 67 ~~~~~i~~gGG-tps~----l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ri 131 (391)
.++.+|=++|| |+-. ++.+..++ ++.+++.. ++..+.+-++ |+.+-+..++...++|++.+
T Consensus 39 ~G~~siE~~GGatfd~~~rfl~Edpwer-lr~lr~~~---~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~ 114 (499)
T PRK12330 39 AGYWSVECWGGATFDACIRFLNEDPWER-LRTFRKLM---PNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVF 114 (499)
T ss_pred cCCCEEEecCCcchhhhhcccCCCHHHH-HHHHHHhC---CCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEE
Confidence 35666755554 4443 45555444 45666653 3466776665 44555678888888999987
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+..-. |+- .....+++.++++ .. ...+-+.. -|-.|.+.+.+..+.+.+.|++.|.+=
T Consensus 115 RIfd~l-ndv-----------~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 115 RVFDAL-NDP-----------RNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred EEEecC-ChH-----------HHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 776432 222 5566777777777 32 12222233 378899999999999999999987543
No 200
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=92.02 E-value=0.38 Score=40.48 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHcc
Q psy2383 351 IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
++..|++|++.||++.+.+.=+||++|+-++|.|+...+
T Consensus 98 iR~~LqqLE~~glVek~~~GR~lT~~G~~~LD~iA~~i~ 136 (150)
T PRK09333 98 IRKILQQLEKAGLVEKTKKGRVITPKGRSLLDNLAAEVK 136 (150)
T ss_pred HHHHHHHHHHCCCeeeCCCCCEeCHHHHHHHHHHHHHHH
Confidence 578899999999999887777799999999999987654
No 201
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=91.93 E-value=0.59 Score=41.82 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-----CCe----EEeCcchHHHH
Q psy2383 324 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-----NKN----IKPTSFGRYFL 381 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-----~~~----~~lT~~G~~~~ 381 (391)
.++..|....+++...+.+.+|++...+...|+.|++.|||+.. .++ ++||++|....
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 34445555677999999999999988899999999999999865 233 79999997643
No 202
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=91.84 E-value=1.1 Score=32.43 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=42.8
Q ss_pred HHHHHhhhhcCC--CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCc
Q psy2383 323 EFMLNALRLKDG--FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTS 375 (391)
Q Consensus 323 e~~~~~lr~~~g--~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~ 375 (391)
+.++..|+...+ +...++.+..|++...+...|..|++.|+|..++ ..|.++.
T Consensus 9 ~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 9 EKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 445555666555 9999999999999888899999999999999854 6677764
No 203
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=91.84 E-value=3.8 Score=41.54 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=78.4
Q ss_pred CeeEEEEeCC-C----CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-T----PSLISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-t----ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.+|=+||| | -++++++.. +.++.+++.. ++..+.+-++ |+++-+..++...++|++.|.
T Consensus 38 Gv~~IE~~ggatfd~~~~Fl~e~p~-e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~ir 113 (467)
T PRK14041 38 GFYSMEVWGGATFDVCVRFLNENPW-ERLKEIRKRL---KNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIR 113 (467)
T ss_pred CCCEEEecCCccchhhhcccCCCHH-HHHHHHHHhC---CCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEE
Confidence 5677766555 3 234555543 4455566542 3456655333 344445567888899999888
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+.. +.|+ .+.+..+++.+++. .. ..+++..++ |-.|.+.+.+..+.+.+.|++.|.+-
T Consensus 114 if~-~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~-p~~t~e~~~~~a~~l~~~Gad~I~i~ 173 (467)
T PRK14041 114 IFD-ALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVS-PVHTLEYYLEFARELVDMGVDSICIK 173 (467)
T ss_pred EEE-eCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccC-CCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 766 4454 24577888888888 43 234555566 88899999999999999999977543
No 204
>COG4754 Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.49 Score=39.31 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=45.9
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~ 383 (391)
..-|+-.+++..+++++++.+....+...||++.+++.|.+|++|+.+.++
T Consensus 27 GraDl~~L~~e~~vdidDL~piv~ta~~Lglv~~e~GDiilT~~Gk~~v~~ 77 (157)
T COG4754 27 GRADLPYLEKEMEVDIDDLMPIVETASLLGLVTAESGDIILTDEGKEYVES 77 (157)
T ss_pred CcccchhHHHHhCCChhhHHHHHHHHHhcCceeccCCCEEEehhhHHHHhC
Confidence 346788888888999999999999999999999999999999999998864
No 205
>PRK00915 2-isopropylmalate synthase; Validated
Probab=91.73 E-value=4 Score=42.03 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=79.9
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 146 (391)
+|+.|=+| .|.. ++...+.+ ..+.+. .++.+++.-+++..-+ +..++.++++|+.+|.+-+=+.+-.+...+
T Consensus 39 Gv~~IE~G--~p~~-s~~d~~~v-~~i~~~---~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l 111 (513)
T PRK00915 39 GVDVIEAG--FPAS-SPGDFEAV-KRIART---VKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKL 111 (513)
T ss_pred CCCEEEEc--CCCC-ChHHHHHH-HHHHhh---CCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHh
Confidence 57777664 5544 55555444 444433 2346777776554222 123444557899999999877677677777
Q ss_pred CCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 147 GRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 147 ~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
++.. ..+.+.++++.+++. .. +.++...+. .-+++-+.+.++.+.+.+++.|.+
T Consensus 112 ~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 112 KMSREEVLEMAVEAVKYARSYTDD-VEFSAEDAT-RTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 7542 333455777778777 54 655555443 345788889999999999987644
No 206
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=91.66 E-value=0.47 Score=36.76 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=37.7
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC----eEEeCcchHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK----NIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~----~~~lT~~G~~~~~~i~ 385 (391)
..|+....+.-..+.+......-++.|++.|++..+++ .+.+|++|..++...-
T Consensus 29 ~~~~~~Tri~y~aNlny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~y~ 86 (95)
T COG3432 29 EGGIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLEKYS 86 (95)
T ss_pred CCCCCceeeeeecCcCHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHHHHH
Confidence 34455555433334444456778999999997776654 4999999999988764
No 207
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=91.63 E-value=0.81 Score=35.35 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=39.4
Q ss_pred CCCChhH-HHHHhCCCHHHHHHHHHHHHHCCCeEEcCCe---------------------EEeCcchHHHHHH
Q psy2383 333 DGFSPNL-FFERTGINIKIIESKLKNAEKLGLLKRNNKN---------------------IKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~-~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~---------------------~~lT~~G~~~~~~ 383 (391)
-|.|-.. +..+.+.+++.+...++.|++.||++..++. +.||.+|..++..
T Consensus 19 ~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~g~~iK~~~~k~K~~~e~~~hHtYY~LTr~G~~llR~ 91 (92)
T PF10007_consen 19 AGPDYAKSIARRLKIPLEEVREALEKLEEMGLLERVEGKTIKRSEAKFKPKKEVHKHHTYYRLTREGELLLRE 91 (92)
T ss_pred HCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecCcccchhhhhcccchhhhcCCceeeecHhHHHHHhc
Confidence 3666554 6778899999999999999999999876554 5577777766543
No 208
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=91.42 E-value=1.1 Score=35.61 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=47.5
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----CC---eEEeCcchHHHHHHHHHHc
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----NK---NIKPTSFGRYFLNDLQQIF 388 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~~---~~~lT~~G~~~~~~i~~~f 388 (391)
.++....+....+.+...+-..++.|++.||+... |. .+.||++|.-..+.+...+
T Consensus 42 ~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~ 104 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKIESLISEI 104 (109)
T ss_pred CcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHHHHHHHHH
Confidence 56999999999999988888999999999999853 33 3779999999999887654
No 209
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=91.18 E-value=0.94 Score=29.73 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
.+...++.+..|.+...+...+..|++.|++..+++.+.+|
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~~~~~i~ 48 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLISREGGRIVIL 48 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCEEEEC
Confidence 35567788888888878889999999999999988888876
No 210
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.80 E-value=4.3 Score=42.51 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=78.4
Q ss_pred CeeEEEEeCC-CCCC----CCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-TPSL----ISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-tps~----l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.+|=++|| |+-. ++.+..++ ++.+++.. +++.+.+-++ |+.+-+..++...++|++.|.
T Consensus 40 G~~siE~~GGatf~~~~~~~~e~p~e~-lr~l~~~~---~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~r 115 (593)
T PRK14040 40 GYWSLESWGGATFDACIRFLGEDPWER-LRELKKAM---PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFR 115 (593)
T ss_pred CCCEEEecCCcchhhhccccCCCHHHH-HHHHHHhC---CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEE
Confidence 5677766555 4332 45555444 45566653 3456655444 444556678889999999888
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+.. +.++ .+.+..+++.+++. .. ..++-+. +-|..|.+-+.+.++.+.+.|++.|.+-
T Consensus 116 ifd-~lnd-----------~~~~~~ai~~ak~~G~~~~~~i~yt-~~p~~~~~~~~~~a~~l~~~Gad~i~i~ 175 (593)
T PRK14040 116 VFD-AMND-----------PRNLETALKAVRKVGAHAQGTLSYT-TSPVHTLQTWVDLAKQLEDMGVDSLCIK 175 (593)
T ss_pred Eee-eCCc-----------HHHHHHHHHHHHHcCCeEEEEEEEe-eCCccCHHHHHHHHHHHHHcCCCEEEEC
Confidence 874 4444 25688899999988 43 1223222 3588899999999999999999977543
No 211
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.69 E-value=6 Score=39.94 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=79.1
Q ss_pred CeeEEEEeCC-CC----CCCCHHHHHHHHHHHHHhCCCCCCcEEEEee----------CCCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-TP----SLISDTGLDYLLKNIKKLLLFKKNISITLEA----------NPSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-tp----s~l~~~~l~~ll~~i~~~~~~~~~~eit~e~----------~p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.+|=++|| |+ ++++++.. +.++.+++.. ++..+.+-+ .|+++-++.++...++|++.|.
T Consensus 39 Gv~~IE~~ggatf~~~~~f~~e~p~-e~l~~l~~~~---~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~ir 114 (448)
T PRK12331 39 GYHSLEMWGGATFDACLRFLNEDPW-ERLRKIRKAV---KKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIR 114 (448)
T ss_pred CCCEEEecCCccchhhhccCCCCHH-HHHHHHHHhC---CCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEE
Confidence 5677766655 33 33555543 3446666543 345665433 3555667888899999999888
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+-. +.|+- ..+.++++.+++. .. .+++....+ |--|.+-+.+..+.+.+.|++.|.+-
T Consensus 115 if~-~lnd~-----------~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 115 IFD-ALNDV-----------RNLETAVKATKKAGGHAQVAISYTTS-PVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred EEE-ecCcH-----------HHHHHHHHHHHHcCCeEEEEEEeecC-CCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 776 33332 1366788889888 43 244555555 78899999999999999999977543
No 212
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=90.66 E-value=0.4 Score=39.86 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHHHHHcc
Q psy2383 351 IESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
++..|++|++.||++.+ ++.=.||++|+-.+|.|+...+
T Consensus 97 iR~~LqqLE~~glv~k~~~~GR~lT~~G~~~lD~iA~~v~ 136 (139)
T PF01090_consen 97 IRKILQQLEKAGLVEKDPKGGRRLTPKGQRDLDRIAGQVA 136 (139)
T ss_dssp HHHHHHHHHHTTSEEEETTTEEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEecCCCCCEECHHHHHHHHHHHHHHH
Confidence 57889999999999988 5555899999999999987764
No 213
>PRK09389 (R)-citramalate synthase; Provisional
Probab=90.53 E-value=6.5 Score=40.19 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=80.8
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+|+.|=+| .|.. ++...+. +..+.+. ....++..-+++. .+.++...++|+++|.+.+=+.+-.....++
T Consensus 37 Gv~~IE~G--~p~~-~~~d~e~-v~~i~~~---~~~~~i~a~~r~~---~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~ 106 (488)
T PRK09389 37 GVDVIEAG--SAIT-SEGEREA-IKAVTDE---GLNAEICSFARAV---KVDIDAALECDVDSVHLVVPTSDLHIEYKLK 106 (488)
T ss_pred CCCEEEEe--CCcC-CHHHHHH-HHHHHhc---CCCcEEEeecccC---HHHHHHHHhCCcCEEEEEEccCHHHHHHHhC
Confidence 57777665 4554 4544433 3444432 2246777666552 5568888899999999998555555556666
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
+.. ..+.+.++++.+++. .. +.++..-+ +.-+++-+.+.++.+.+.+++.|.+
T Consensus 107 ~s~~e~l~~~~~~v~~ak~~g~~-v~~~~ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 107 KTREEVLETAVEAVEYAKDHGLI-VELSGEDA-SRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCE-EEEEEeeC-CCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 542 334456666777777 44 67777654 4567888889999999999998754
No 214
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=90.35 E-value=1.1 Score=34.28 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=37.5
Q ss_pred CChhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 335 FSPNLFFERT-GINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 335 ~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
....++.+.. |++...+...|..|++.|++.... -.+.||++|.-+...+.
T Consensus 19 ~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~~l~ 77 (90)
T PF01638_consen 19 MRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLPVLE 77 (90)
T ss_dssp EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHHHHH
T ss_pred CcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHHHHH
Confidence 4456666666 666666788999999999998752 25999999999987764
No 215
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.33 E-value=1.3 Score=38.75 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcchHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G~~~~~~i~~ 386 (391)
.++....+.+.++.+...+...++.|++.|||+.. | -.+.||++|+-+...+..
T Consensus 70 ~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~~i~~ 130 (176)
T PRK10870 70 HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLP 130 (176)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 35777899999999888888999999999999974 2 367899999999988753
No 216
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=90.08 E-value=9.8 Score=35.68 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=80.1
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCC--CCC---CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANP--STF---EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p--~~l---~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
+|+.|=+|- |.. ++... +.++.+.+.. . ++.++...+.+ ..+ ++..++.+.+.|++.|.+.+=+.+...
T Consensus 33 Gv~~IE~G~--~~~-~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~ 106 (273)
T cd07941 33 GVDYIEGGW--PGS-NPKDT-EFFARAKKLK-L-KHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHV 106 (273)
T ss_pred CCCEEEecC--CcC-CHHHH-HHHHHHHHcC-C-CCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHHHH
Confidence 577777743 332 44443 3344444431 1 23456655532 222 345788889999999888775555556
Q ss_pred HHHhCCC--CCHHHHHHHHHHHHhh-cccceEeEecCC---CCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 143 LNILGRT--HDSKQAKYAIEIAKQY-FNNFNLDLIYAL---PNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 143 l~~l~R~--~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl---Pgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
.+.+|+. ...+.+.++++.+++. +. +.+..+ .+ +.-+++.+.+-++.+.+.+++.|.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~-~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l 170 (273)
T cd07941 107 TEALGTTLEENLAMIRDSVAYLKSHGRE-VIFDAE-HFFDGYKANPEYALATLKAAAEAGADWLVL 170 (273)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEeEE-eccccCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 6777766 4566678888888888 64 666433 22 2346888888899999999997643
No 217
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=90.06 E-value=1.1 Score=41.16 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee-------CCCCCCHHH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA-------NPSTFEIEK 119 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~-------~p~~l~~e~ 119 (391)
.++++.+++-.-. -|+.+=||+||..+.+.+.+++.++..+++ ++.+..-. .++. -++.
T Consensus 24 ~~~~~dlLe~ag~--------yID~~K~g~Gt~~l~~~~~l~eki~l~~~~-----gV~v~~GGtl~E~a~~q~~-~~~y 89 (244)
T PF02679_consen 24 LRYLEDLLESAGD--------YIDFLKFGWGTSALYPEEILKEKIDLAHSH-----GVYVYPGGTLFEVAYQQGK-FDEY 89 (244)
T ss_dssp HHHHHHHHHHHGG--------G-SEEEE-TTGGGGSTCHHHHHHHHHHHCT-----T-EEEE-HHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHhhh--------hccEEEecCceeeecCHHHHHHHHHHHHHc-----CCeEeCCcHHHHHHHhcCh-HHHH
Confidence 4556665544332 278899999999999999999999998864 23343321 2333 3679
Q ss_pred HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC--C----CCCHHHHHHHHHHH
Q psy2383 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL--P----NQTLSELMLDLNYA 192 (391)
Q Consensus 120 l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl--P----gqt~e~~~~~l~~~ 192 (391)
++.+++.|++.|.+.-=|.+ .+.++-.+.|+.+++. |. |-..+ |- | ..|++.|.+.++..
T Consensus 90 l~~~k~lGf~~IEiSdGti~----------l~~~~r~~~I~~~~~~Gf~-v~~Ev--G~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 90 LEECKELGFDAIEISDGTID----------LPEEERLRLIRKAKEEGFK-VLSEV--GKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp HHHHHHCT-SEEEE--SSS-------------HHHHHHHHHHHCCTTSE-EEEEE--S-SSHHHHTT--CCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCcee----------CCHHHHHHHHHHHHHCCCE-Eeecc--cCCCchhcccCCHHHHHHHHHHH
Confidence 99999999998877544321 3445566778888888 75 44433 42 1 13577889999999
Q ss_pred HhcCCCeEEEe
Q psy2383 193 IQYSPPHLSLY 203 (391)
Q Consensus 193 ~~l~~~~is~y 203 (391)
++.|.+.|-+=
T Consensus 157 LeAGA~~ViiE 167 (244)
T PF02679_consen 157 LEAGADKVIIE 167 (244)
T ss_dssp HHHTECEEEE-
T ss_pred HHCCCCEEEEe
Confidence 99999988543
No 218
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=89.79 E-value=1.7 Score=30.21 Aligned_cols=50 Identities=28% Similarity=0.338 Sum_probs=41.3
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
++.-|....-+..+++.+.|+++...+..-|..|++.|++....|.+.+-
T Consensus 5 Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~~~ 54 (57)
T PF08220_consen 5 ILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAVLN 54 (57)
T ss_pred HHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEEeC
Confidence 33345556678899999999999888999999999999999888777664
No 219
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=89.76 E-value=1.2 Score=39.89 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=41.8
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCcch
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTSFG 377 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~~G 377 (391)
+....++....+.+.++.+...+...++.|++.|++...+ ..+.||++|
T Consensus 152 l~~~g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~r~~~~~lT~~G 203 (203)
T TIGR01884 152 LKAEGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGRKGKRYSLTKLG 203 (203)
T ss_pred HHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCCccEEEeCCCC
Confidence 3434578899999999998888889999999999999874 679999998
No 220
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.56 E-value=1.3 Score=41.28 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=51.0
Q ss_pred cCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHH
Q psy2383 315 IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 383 (391)
Q Consensus 315 l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~ 383 (391)
.+-.++..|.++..+-..+ |.-.+......++..+...+..|+++|++..+.+.+.+|++|.-+...
T Consensus 17 ~pi~~R~Ve~vl~ail~~~--d~wkIvd~s~~plp~v~~i~~~l~~egiv~~~~g~v~~TekG~E~~e~ 83 (354)
T COG1568 17 IPIYDRSVENVLSAILATN--DFWKIVDYSDLPLPLVASILEILEDEGIVKIEEGGVELTEKGEELAEE 83 (354)
T ss_pred CcHHHHHHHHHHHHHHcCc--chHhhhhhccCCchHHHHHHHHHHhcCcEEEecCcEeehhhhHHHHHH
Confidence 4444667777766543222 666666766777777788899999999999999999999999987754
No 221
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=89.52 E-value=1.5 Score=31.13 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCc
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTS 375 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~ 375 (391)
..+...++.+..|.+...+...++.|++.|++..++ +.+.+|+
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence 357788899999998888889999999999999988 8898875
No 222
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.51 E-value=7.5 Score=40.63 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=79.9
Q ss_pred CeeEEEEeCC-CC----CCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-TP----SLISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-tp----s~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.+|=+||| |+ ++++++.. +.++.+++.. ++..+..-++ |+++-++.++...++|++.+.
T Consensus 34 Gv~~IE~~GGatfd~~~~f~~e~~~-e~l~~l~~~~---~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~ir 109 (582)
T TIGR01108 34 GYWSLEVWGGATFDACIRFLNEDPW-ERLRELKKAL---PNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFR 109 (582)
T ss_pred CCCEEEecCCcccccccccCCCCHH-HHHHHHHHhC---CCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEE
Confidence 5777766655 33 33555554 4446666643 3456666543 555667788889999999877
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe-cCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI-YALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI-~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+.. +.++ ...+..+++.+++. .. +.+.+- .+-|-.|.+.+.+.++.+.+.|++.|.+-
T Consensus 110 if~-~lnd-----------~~n~~~~i~~ak~~G~~-v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~ 169 (582)
T TIGR01108 110 IFD-ALND-----------PRNLQAAIQAAKKHGAH-AQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK 169 (582)
T ss_pred EEE-ecCc-----------HHHHHHHHHHHHHcCCE-EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 764 3333 14578888999988 43 444322 22577899999999999999999977543
No 223
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=89.05 E-value=20 Score=36.97 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=89.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCC---CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTF---EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l---~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
+|+.|=+| .|.. ++... +.++.+.+. .+ .+.+++..++ ...+ ++..++.+.++|+++|.+-+-+.+-..
T Consensus 40 Gvd~IEvG--~p~a-s~~d~-~~~~~i~~~-~l-~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~ 113 (524)
T PRK12344 40 GVDYIEGG--WPGS-NPKDT-EFFKRAKEL-KL-KHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHV 113 (524)
T ss_pred CCCEEEEc--CCcC-ChhHH-HHHHHHHHh-CC-CCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHH
Confidence 56777664 4443 34433 334444431 11 2345555542 2223 456788899999999999987766666
Q ss_pred HHHhCCC--CCHHHHHHHHHHHHhh-cccceEeEe--cCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC
Q psy2383 143 LNILGRT--HDSKQAKYAIEIAKQY-FNNFNLDLI--YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 143 l~~l~R~--~~~~~~~~~i~~~~~~-~~~v~~dlI--~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~ 217 (391)
.+.+++. ...+.+.++++.+++. .. +.+..+ +.-+-.+++-+.+-++.+.+.+++.|. .+.|.
T Consensus 114 ~~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~------l~DTv----- 181 (524)
T PRK12344 114 TEALRTTLEENLAMIRDSVAYLKAHGRE-VIFDAEHFFDGYKANPEYALATLKAAAEAGADWVV------LCDTN----- 181 (524)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEccccccccccCCHHHHHHHHHHHHhCCCCeEE------EccCC-----
Confidence 6777754 2445566777777777 43 444332 111234577788888999999999875 33443
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q psy2383 218 PLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 218 ~~~~p~~~~~~~~~~~~~~~L 238 (391)
....+.+..++.....+.+
T Consensus 182 --G~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 182 --GGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred --CCcCHHHHHHHHHHHHHhc
Confidence 1234455566665555444
No 224
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=89.05 E-value=1.2 Score=45.45 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=50.3
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCcchHHHHHHHH
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~~G~~~~~~i~ 385 (391)
++..|....+++...+++..|.+...+...++.|++.|||+.++ ..+.||++|+-++..+.
T Consensus 11 vL~~L~~~~~~s~~eLA~~l~l~~~tVt~~i~~Le~kGlV~~~~~~~~~i~LTeeG~~~~~~g~ 74 (489)
T PRK04172 11 VLKALKELKEATLEELAEKLGLPPEAVMRAAEWLEEKGLVKVEERVEEVYVLTEEGKKYAEEGL 74 (489)
T ss_pred HHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEEEeeeEEEEEECHHHHHHHHhcC
Confidence 34445555678899999999999888899999999999999876 44999999999888653
No 225
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.83 E-value=3.2 Score=39.11 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEec-CCC-CCCHHHHHHHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLIY-ALP-NQTLSELMLDLNY 191 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~-GlP-gqt~e~~~~~l~~ 191 (391)
..-++...++|+++|.+.+=+.+....+.+++.. ..+++.+.++.+++. .. +.+.+.- |-| .-+++.+.+.++.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 4468888899999999999555556667777653 445577778888887 54 6666653 323 4578899999999
Q ss_pred HHhcCCCeEEEe
Q psy2383 192 AIQYSPPHLSLY 203 (391)
Q Consensus 192 ~~~l~~~~is~y 203 (391)
+.++|++.|++-
T Consensus 156 ~~~~G~~~i~l~ 167 (280)
T cd07945 156 LSDLPIKRIMLP 167 (280)
T ss_pred HHHcCCCEEEec
Confidence 999999987554
No 226
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=88.31 E-value=0.68 Score=32.51 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=33.9
Q ss_pred hhcCCCChhHHHHHhCC---CHHHHHHHHHHHHHCCCeEEcCCeEEe
Q psy2383 330 RLKDGFSPNLFFERTGI---NIKIIESKLKNAEKLGLLKRNNKNIKP 373 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~---~~~~~~~~l~~l~~~gl~~~~~~~~~l 373 (391)
.+..|++.+++..++.. +...+...++.|+++|.+..+++.++|
T Consensus 13 Plr~G~~keeLrsrl~~~~l~~k~~~~ll~~l~~~g~l~~~g~~v~L 59 (59)
T PF09106_consen 13 PLRPGMPKEELRSRLFKPRLPPKLFNALLEALVAEGRLKVEGDWVRL 59 (59)
T ss_dssp TTSS-EEHHHHHHHCST-TS-HCCHHHHHHHHHHTTSEEEESSEEEE
T ss_pred cCccCcCHHHHHHHHhhccCCHHHHHHHHHHHHHCCCeeeECCEeeC
Confidence 44578888988877743 333467889999999999999999886
No 227
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=87.89 E-value=1.3 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE----cCCeEEeCcchHHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR----NNKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~----~~~~~~lT~~G~~~~~~i~~~ 387 (391)
-+++.+.+..+.|.+.......|.+|++.|+++. +|.-+.+|++|+.++-+...+
T Consensus 18 ~~~t~~ela~~l~~S~qta~R~l~~le~~~~I~R~~~~~Gq~i~iTekG~~~L~~~~~d 76 (214)
T COG1339 18 VKVTSSELAKRLGVSSQTAARKLKELEDEGYITRTISKRGQLITITEKGIDLLYKEYED 76 (214)
T ss_pred ccccHHHHHHHhCcCcHHHHHHHHhhccCCcEEEEecCCCcEEEehHhHHHHHHHHHHH
Confidence 3488889999999887777888999999999984 578899999999988876544
No 228
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=87.87 E-value=3.4 Score=31.30 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=44.4
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCeEEeCcchHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~~~lT~~G~~~~~~i~ 385 (391)
.++...++.+..|.+...+...+..|++.|++..+ ++.+.++++..-+.....
T Consensus 19 ~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~ 73 (91)
T smart00346 19 GGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYL 73 (91)
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHH
Confidence 46889999999999888889999999999999986 567999988777665543
No 229
>PRK15452 putative protease; Provisional
Probab=87.72 E-value=3.4 Score=41.59 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=65.7
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC-CHHHHHHHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ-TLSELMLDLNYAI 193 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq-t~e~~~~~l~~~~ 193 (391)
+.+.++..-++|.+.|-+|.++|+-+.. ....+.+++.++++.+++. .+ +.+- +--+|.+ ..+.+.+.++.+.
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~k-vyvt-~n~i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGKK-FYVV-VNIAPHNAKLKTFIRDLEPVI 86 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCCE-EEEE-ecCcCCHHHHHHHHHHHHHHH
Confidence 6788888889999999999999987653 3566889999999999987 44 4331 1234544 4667778888999
Q ss_pred hcCCCeEEEeccc
Q psy2383 194 QYSPPHLSLYSLT 206 (391)
Q Consensus 194 ~l~~~~is~y~l~ 206 (391)
++++|.|-+-.+-
T Consensus 87 ~~gvDgvIV~d~G 99 (443)
T PRK15452 87 AMKPDALIMSDPG 99 (443)
T ss_pred hCCCCEEEEcCHH
Confidence 9999988776543
No 230
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=87.72 E-value=2.9 Score=31.59 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=47.9
Q ss_pred cCHhh-HHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCcchHHHH
Q psy2383 315 IEKKC-LIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTSFGRYFL 381 (391)
Q Consensus 315 l~~~~-~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~~G~~~~ 381 (391)
++.++ +....+-++++-.+=|..+.+.+..+.+...+...|..|...+|+..+. +.++||-.|-.++
T Consensus 4 L~~~d~rvL~aiE~gmk~hE~VP~~~I~~~s~l~~~~~~~~L~~L~~~kLv~~~~~~Y~GYrLT~~GYD~L 74 (82)
T PF09202_consen 4 LSKEDFRVLRAIEMGMKNHEWVPLELIEKISGLSEGEVEKRLKRLVKLKLVSRRNKPYDGYRLTFLGYDYL 74 (82)
T ss_dssp --HHHHHHHHHHHTTTTT-SSEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEE-SSS-EEEE-HHHHHHH
T ss_pred CCHHHHHHHHHHHHcccCCccCCHHHHHHHhCcCHHHHHHHHHHHHhcCCccccCCCcceEEEeecchhHH
Confidence 45555 3445566778888889999999999988777888999999999999987 8899999996543
No 231
>PF09114 MotA_activ: Transcription factor MotA, activation domain; InterPro: IPR015198 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the N-terminal (activation) domain of MotA factors that binds sigma70. The N-terminal domain adopts an almost completely alpha-helical topology, with five alpha-helices and a short, two-stranded, beta-ribbon. Four alpha helices (alpha1, alpha3, alpha4 and alpha5) are amphipathic and pack their hydrophobic surfaces around the central helix alpha2 [].; PDB: 1BJA_B 1I1S_A.
Probab=87.26 E-value=1.9 Score=32.74 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=38.5
Q ss_pred CChhHHHHHh--CCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHc
Q psy2383 335 FSPNLFFERT--GINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388 (391)
Q Consensus 335 ~~~~~~~~~~--~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f 388 (391)
+..+...+.. ...-..+.+.+..|++.||++.+|+.+.+|.+|+-.+......|
T Consensus 31 it~~ev~e~l~~~~~~~~V~SNIGvLIKkglIEKSGDGlv~T~~g~~Ii~~AA~l~ 86 (96)
T PF09114_consen 31 ITASEVREALATEMNKASVNSNIGVLIKKGLIEKSGDGLVITEEGMDIIIQAAELW 86 (96)
T ss_dssp B-HHHHHH-T-TTS-HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhHHHHhHHHHHHcCcccccCCceEEechHHHHHHHHHHHH
Confidence 4555555532 12223467789999999999999999999999999888876554
No 232
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=86.66 E-value=2.4 Score=41.82 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=59.2
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE--------eEecCCCC--CCHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL--------DLIYALPN--QTLSE 184 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~--------dlI~GlPg--qt~e~ 184 (391)
++-.|+.+++.|++.|...+-...+ |..=+.+++.+.-+.+.++ +. +++ |+..|.|+ +-.+.
T Consensus 12 d~v~l~~irQ~G~~giV~al~~~p~------gevW~~~~i~~~k~~ie~~GL~-~~vvEs~pv~e~Ik~g~~~rd~~Ien 84 (394)
T TIGR00695 12 DPVSLEDVRQAGATGIVTALHHIPN------GEVWEKEEIRKRKEYIESAGLH-WSVVESVPVHEAIKTGTGNYGRWIEN 84 (394)
T ss_pred CcchHHHHhhcCCcceeecCCCCCC------CCCCCHHHHHHHHHHHHHcCCe-EEEEeCCCccHHHHcCCCcHHHHHHH
Confidence 3345666777888888876644432 3345777777777777777 54 444 77888876 45777
Q ss_pred HHHHHHHHHhcCCCeEEEeccccc
Q psy2383 185 LMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
++++|+-+.+.|++-| +|.++|.
T Consensus 85 yk~~irNla~~GI~vi-cYNFMPv 107 (394)
T TIGR00695 85 YKQTLRNLAQCGIKTV-CYNFMPV 107 (394)
T ss_pred HHHHHHHHHHcCCCEE-EEEeccc
Confidence 7888888888888755 7888763
No 233
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=86.65 E-value=5.6 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=42.0
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----CeEEeCcchHHHHHHHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~~G~~~~~~i~ 385 (391)
++..++.+.++.+...+...++.|++.|++.... ..+.+|+ |.-+.+.+.
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~-g~~~~~~~~ 74 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD-AERLLALLE 74 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC-chHHHHHHH
Confidence 8888899999998777889999999999998643 6688998 888777664
No 234
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=86.55 E-value=24 Score=36.46 Aligned_cols=128 Identities=18% Similarity=0.101 Sum_probs=82.4
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCC--CC---CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPS--TF---EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~--~l---~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
+|+.|=.| -|.. ++.+...+ ..+.+. ++ .+.++..-+++. .+ .+..++.+.++|..+|.+-+=+.+-..
T Consensus 36 GVd~IE~G--~p~~-s~~d~~~v-~~i~~~-~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~ 109 (526)
T TIGR00977 36 GIHYIEGG--WPGA-NPKDVQFF-WQLKEM-NF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHV 109 (526)
T ss_pred CCCEEEEe--CCCC-ChHHHHHH-HHHHHh-CC-CCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHH
Confidence 56776654 4443 55554433 333321 22 235777665432 22 255788899999999999887777777
Q ss_pred HHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEe---cCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 143 LNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLI---YALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 143 l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI---~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
...+++.. ..+.+.++++.+++. .. +.++.+ -|. --+++-+.+.++.+.+.+++.|.+-
T Consensus 110 ~~~l~~s~ee~l~~~~~~v~~ak~~g~~-V~~~~e~f~D~~-r~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 110 LEALQTTLEENLAMIYDTVAYLKRQGDE-VIYDAEHFFDGY-KANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeeeecc-cCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 77887542 444566677888887 43 544333 333 2468888999999999999988554
No 235
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=86.51 E-value=15 Score=34.79 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhH
Q psy2383 45 SEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYS 124 (391)
Q Consensus 45 ~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~ 124 (391)
.++.+.+-+++|++.-..- ...+...|=++|+.|.+ ++...+.|..+.+... .....++.-+...++-.|.++.+.
T Consensus 111 ~i~~~ae~~v~ei~~Gi~g-T~ikAGiIk~~~~~~~i-Tp~Eek~lrAaA~A~~--~Tg~Pi~tHt~~gt~g~eq~~il~ 186 (316)
T COG1735 111 PIEELAEFVVKEIEEGIAG-TGIKAGIIKEAGGSPAI-TPLEEKSLRAAARAHK--ETGAPISTHTPAGTMGLEQLRILA 186 (316)
T ss_pred CHHHHHHHHHHHHHhcccC-CccccceeeeccCcccC-CHHHHHHHHHHHHHhh--hcCCCeEEeccchhhhHHHHHHHH
Confidence 3577888888998853221 13356678888999984 6655555544444432 235677777777788999999999
Q ss_pred HCCCC--EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy2383 125 IIGIN--RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 161 (391)
Q Consensus 125 ~~Gv~--risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~ 161 (391)
+-|++ +|+||= +++.++.....+.+..
T Consensus 187 ~egvdl~~v~igH----------~d~n~dd~~y~~~l~~ 215 (316)
T COG1735 187 EEGVDLRKVSIGH----------MDPNTDDVYYQKKLAD 215 (316)
T ss_pred HcCCChhHeeEec----------cCCCCChHHHHHHHHh
Confidence 99985 899984 5566666655555544
No 236
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=86.42 E-value=3.9 Score=32.48 Aligned_cols=54 Identities=28% Similarity=0.390 Sum_probs=42.5
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
..+.....+.+..+++...+-..++.|++.|||.... -.+.||++|.-....+.
T Consensus 34 ~~~~~~~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~~~ 94 (126)
T COG1846 34 AGGITVKELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQLL 94 (126)
T ss_pred hCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHHhc
Confidence 3344337788889998888889999999999998652 35889999998877653
No 237
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=85.74 E-value=4.7 Score=27.71 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=39.9
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----CeEEeCc-chHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----KNIKPTS-FGRYFLND 383 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~-~G~~~~~~ 383 (391)
...+....+.+.++.+...+...++.|.+.|++.... ..+.+|+ .|.-+.+.
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 64 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSLTDEKVADLLEE 64 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEEchHHHHHHHHh
Confidence 4567788889999988878889999999999998543 4566777 66655543
No 238
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=84.47 E-value=5.7 Score=36.13 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=43.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-eEEeCcchHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-NIKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-~~~lT~~G~~~~~~ 383 (391)
-.+...++.+..|+.+..+..-+..|+++||+...+. ++.+|++|.-|+-.
T Consensus 24 p~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~~gR~~Y~iTkkG~e~l~~ 75 (260)
T COG1497 24 PRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEKEGRGEYEITKKGAEWLLE 75 (260)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHhccceeecCCeeEEEehhHHHHHHH
Confidence 3477888999999998888889999999999998875 89999999877543
No 239
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=84.19 E-value=1.3 Score=32.41 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCeEEcCCe----EEeCcch
Q psy2383 342 ERTGINIKIIESKLKNAEKLGLLKRNNKN----IKPTSFG 377 (391)
Q Consensus 342 ~~~~~~~~~~~~~l~~l~~~gl~~~~~~~----~~lT~~G 377 (391)
+.||++...+...|..|.++|+++..... +.||++|
T Consensus 31 ~~~Gv~e~avR~alsRl~~~G~L~~~r~Gr~~~Y~Lt~~g 70 (70)
T PF07848_consen 31 AAFGVSESAVRTALSRLVRRGWLESERRGRRSYYRLTERG 70 (70)
T ss_dssp CCTT--HHHHHHHHHHHHHTTSEEEECCCTEEEEEE-HHH
T ss_pred HHcCCChHHHHHHHHHHHHcCceeeeecCccceEeeCCCC
Confidence 45677766788999999999999987644 9999987
No 240
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=7 Score=38.04 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=63.9
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHh
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~ 194 (391)
+-+.++..-++|++.|-+|.+.++-+... ...+.+++.++++.++++ .+ +-+=+=.-+.....+.+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk-~~V~~N~~~~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKK-VYVAVNTLLHNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCe-EEEEeccccccchhhHHHHHHHHHHH
Confidence 56677777788999999999866554433 457899999999999999 43 33322222334567779999999999
Q ss_pred cCCCeEEEecc
Q psy2383 195 YSPPHLSLYSL 205 (391)
Q Consensus 195 l~~~~is~y~l 205 (391)
+|+|.|-+--+
T Consensus 91 ~GvDaviv~Dp 101 (347)
T COG0826 91 LGVDAVIVADP 101 (347)
T ss_pred cCCCEEEEcCH
Confidence 99999876653
No 241
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=83.58 E-value=25 Score=36.06 Aligned_cols=126 Identities=15% Similarity=0.077 Sum_probs=75.1
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNI 145 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~ 145 (391)
+|+.|=.| .|.. ++.+.+.+ +.+.+.. ...++..-++ +..+ +..++.++.++..+|.+-+=+.+-.....
T Consensus 36 GV~~IEvG--~p~~-s~~d~e~v-~~i~~~~---~~~~i~al~r~~~~di-d~a~~al~~~~~~~v~i~~~~S~~h~~~~ 107 (494)
T TIGR00973 36 GVDIIEAG--FPVS-SPGDFEAV-QRIARTV---KNPRVCGLARCVEKDI-DAAAEALKPAEKFRIHTFIATSPIHLEHK 107 (494)
T ss_pred CCCEEEEE--CCCC-CHHHHHHH-HHHHHhC---CCCEEEEEcCCCHHhH-HHHHHhccccCCCEEEEEEccCHHHHHHH
Confidence 46666543 5654 44554444 5554432 2345665543 3323 22344555668899999887767777777
Q ss_pred hCCCC--CHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 146 LGRTH--DSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 146 l~R~~--~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
+++.. ..+.+.++++.+++....+.++...+. .-+++.+.+.++.+.+.+++.|.+
T Consensus 108 l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 108 LKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAG-RTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC-CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 77542 233455677777776222555554443 245788888999999999987643
No 242
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=83.34 E-value=4.1 Score=35.37 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=42.2
Q ss_pred hhhcCCC-ChhHHHHHh--CCCHHHHHHHHHHHHHCCCeEEcCC-eEEeCcchH
Q psy2383 329 LRLKDGF-SPNLFFERT--GINIKIIESKLKNAEKLGLLKRNNK-NIKPTSFGR 378 (391)
Q Consensus 329 lr~~~g~-~~~~~~~~~--~~~~~~~~~~l~~l~~~gl~~~~~~-~~~lT~~G~ 378 (391)
+.+..|- |...++++. +++.+++...|+.|++.||++.+++ .+..|.+..
T Consensus 33 ~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l 86 (171)
T PF14394_consen 33 LPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSL 86 (171)
T ss_pred hhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEeccee
Confidence 4555665 899999999 8888889999999999999999987 899887654
No 243
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.23 E-value=41 Score=31.65 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
|+..|.-.....+++|+.-+-++= -.+-..+|.+ .|.+++...++.+-++ +| |.+|+=-|+ |+ ....
T Consensus 23 pg~~d~~sA~la~~aGF~al~~sg----~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lP-v~vD~dtGf-G~-~~nv 95 (289)
T COG2513 23 PGAWDAGSALLAERAGFKALYLSG----AGVAASLGLPDLGITTLDEVLADARRITDAVDLP-VLVDIDTGF-GE-ALNV 95 (289)
T ss_pred cCCcCHHHHHHHHHcCCeEEEecc----HHHHHhcCCCccccccHHHHHHHHHHHHhhcCCc-eEEeccCCC-Cc-HHHH
Confidence 667888889999999998877641 2222366655 3688999999888888 88 999999999 77 9999
Q ss_pred HHHHHHHHhcCCCeEEEeccccc------CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIE------PNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~------pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.++++.+.+.|+.-|++=--... +|. .+.+.++..+....+.+.-....|
T Consensus 96 artV~~~~~aG~agi~iEDq~~pk~cgh~~gk--------~l~~~~e~v~rIkAa~~a~~~~~f 151 (289)
T COG2513 96 ARTVRELEQAGAAGIHIEDQVGPKRCGHLPGK--------ELVSIDEMVDRIKAAVEARRDPDF 151 (289)
T ss_pred HHHHHHHHHcCcceeeeeecccchhcCCCCCC--------CcCCHHHHHHHHHHHHHhccCCCe
Confidence 99999999999987766543321 222 356667777777776666544333
No 244
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=83.18 E-value=6.8 Score=25.81 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=33.1
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK 365 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~ 365 (391)
++..+.-..+++..++++..|.+...+...++.|++.|+++
T Consensus 8 Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 8 ILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 44455667789999999999999888899999999999985
No 245
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=83.08 E-value=12 Score=38.19 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+..+.+++... +++.|++.+ |-.++.|..+.+++..|++.++ ++..|.+=++ .+.-....++.+
T Consensus 154 ~e~~~~~a~~l~~~-------Gad~I~IkD-taGll~P~~~~~LV~~Lk~~~~--~~ipI~~H~Hnt~GlA~An~laAi- 222 (499)
T PRK12330 154 VEGFVEQAKRLLDM-------GADSICIKD-MAALLKPQPAYDIVKGIKEACG--EDTRINLHCHSTTGVTLVSLMKAI- 222 (499)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEeCC-CccCCCHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCcHHHHHHHHH-
Confidence 34555556666532 578999977 7888999999999999999864 2355666553 332244455544
Q ss_pred HCCCCEEEEecCCC
Q psy2383 125 IIGINRLSIGIQSF 138 (391)
Q Consensus 125 ~~Gv~risiGvqS~ 138 (391)
++|++.|...+-++
T Consensus 223 eAGad~vDtai~Gl 236 (499)
T PRK12330 223 EAGVDVVDTAISSM 236 (499)
T ss_pred HcCCCEEEeecccc
Confidence 68999999988776
No 246
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=82.95 E-value=5.5 Score=29.00 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.++.+.++...|.+...+...+..|.++|++..+++.+.+++.-.
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I~d~~~ 72 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIIILDPER 72 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESSHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEECCHHH
Confidence 356677778888888788899999999999999999999986543
No 247
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=82.47 E-value=15 Score=34.38 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~ 124 (391)
..++..+.+++... +++.|++.+ |-..+.|+++.+++..+++.++ ..+.+=+ +.+.-....+..+
T Consensus 148 ~~~~~~~~~~~~~~-------Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~aN~laA~- 214 (275)
T cd07937 148 LEYYVKLAKELEDM-------GADSICIKD-MAGLLTPYAAYELVKALKKEVG----LPIHLHTHDTSGLAVATYLAAA- 214 (275)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEEcC-CCCCCCHHHHHHHHHHHHHhCC----CeEEEEecCCCChHHHHHHHHH-
Confidence 34555566666432 478899976 7778899999999999998865 2333333 3333345556555
Q ss_pred HCCCCEEEEecCC
Q psy2383 125 IIGINRLSIGIQS 137 (391)
Q Consensus 125 ~~Gv~risiGvqS 137 (391)
++|++.|...+..
T Consensus 215 ~aGa~~vd~sv~G 227 (275)
T cd07937 215 EAGVDIVDTAISP 227 (275)
T ss_pred HhCCCEEEEeccc
Confidence 5799999877755
No 248
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=82.32 E-value=2.3 Score=30.83 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.3
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
++....++++++..+|+.+++.+...|+.|+..|.|...
T Consensus 9 l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 9 LRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 344566899999999999999999999999999999864
No 249
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=82.29 E-value=34 Score=31.91 Aligned_cols=52 Identities=6% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII 126 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~ 126 (391)
.+.+.|-+|++++..-..+.+..+++.+++.. +..+++. +.+.+.++.--++
T Consensus 37 ~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~----~~plsID----T~~~~v~eaaL~~ 88 (261)
T PRK07535 37 AGADYLDVNAGTAVEEEPETMEWLVETVQEVV----DVPLCID----SPNPAAIEAGLKV 88 (261)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHHHHHHhC----CCCEEEe----CCCHHHHHHHHHh
Confidence 36788999999764333445666666666543 2456664 5566666665554
No 250
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=82.03 E-value=5.9 Score=26.17 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=34.1
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeE
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNI 371 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~ 371 (391)
..+++...+.+.++.+...+...++.|.+.|++....+.+
T Consensus 12 ~~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~ 51 (53)
T smart00420 12 QGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51 (53)
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecCc
Confidence 4568899999999998888889999999999998776554
No 251
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=81.99 E-value=29 Score=32.69 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=72.5
Q ss_pred EEEEeCCCCCCC--CHH---------------HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEE
Q psy2383 71 TIFIGGGTPSLI--SDT---------------GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSI 133 (391)
Q Consensus 71 ~i~~gGGtps~l--~~~---------------~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risi 133 (391)
.+..|||.|.-+ +.. .+...++.+++..+ ...|.+|+. +.+.++...++|++.|-+
T Consensus 142 Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~---~~kIeVEv~----tleea~ea~~~GaDiI~l 214 (277)
T TIGR01334 142 AVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAP---ERKITVEAD----TIEQALTVLQASPDILQL 214 (277)
T ss_pred HHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCC---CCCEEEECC----CHHHHHHHHHcCcCEEEE
Confidence 345678877655 222 35666777776543 356777764 778888888999999988
Q ss_pred ecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 134 GIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 134 GvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
- +.+++++.++++.+++..+++-+..-= |=|++ ++....+.|+|.|++-.++
T Consensus 215 D--------------n~~~e~l~~~v~~l~~~~~~~~leasG---GI~~~----ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 215 D--------------KFTPQQLHHLHERLKFFDHIPTLAAAG---GINPE----NIADYIEAGIDLFITSAPY 266 (277)
T ss_pred C--------------CCCHHHHHHHHHHHhccCCCEEEEEEC---CCCHH----HHHHHHhcCCCEEEeCcce
Confidence 5 578889999999887543334343333 33444 4455677899999877654
No 252
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=81.99 E-value=6.2 Score=36.37 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=64.3
Q ss_pred eEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCC--CC--CHH-------HHHHhHHCCCCEEEEecCCC
Q psy2383 70 HTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPS--TF--EIE-------KFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 70 ~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~--~l--~~e-------~l~~l~~~Gv~risiGvqS~ 138 (391)
..+..||=|||+ .+++.+++... +++.+-++|. ++ |++ .++.++++|++.|.+|+-+-
T Consensus 29 ~~L~~GGlTPS~-------g~i~~~~~~~~----ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~ 97 (248)
T PRK11572 29 AAPKEGGLTPSL-------GVLKSVRERVT----IPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDV 97 (248)
T ss_pred cCcCCCCcCCCH-------HHHHHHHHhcC----CCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC
Confidence 445788889975 23344444432 4667777776 33 433 45667778999999999775
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeE
Q psy2383 139 NNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHL 200 (391)
Q Consensus 139 ~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~i 200 (391)
+.. .+.+...+.++.+... .. .--+|.+ .+..+.++.+.++|+++|
T Consensus 98 dg~--------vD~~~~~~Li~~a~~~~vTFHRAfD~~--------~d~~~al~~l~~lG~~rI 145 (248)
T PRK11572 98 DGH--------VDMPRMRKIMAAAGPLAVTFHRAFDMC--------ANPLNALKQLADLGVARI 145 (248)
T ss_pred CCC--------cCHHHHHHHHHHhcCCceEEechhhcc--------CCHHHHHHHHHHcCCCEE
Confidence 433 3555555666665443 11 0123332 245578899999999988
No 253
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=81.32 E-value=13 Score=30.63 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=48.9
Q ss_pred hHHCCCCEEEEecCCCCHHHHHHhCC------------CCCHHHHHHHHHHHHhh-cccceEeEecC-CCCCCHHHHHHH
Q psy2383 123 YSIIGINRLSIGIQSFNNKYLNILGR------------THDSKQAKYAIEIAKQY-FNNFNLDLIYA-LPNQTLSELMLD 188 (391)
Q Consensus 123 l~~~Gv~risiGvqS~~~~~l~~l~R------------~~~~~~~~~~i~~~~~~-~~~v~~dlI~G-lPgqt~e~~~~~ 188 (391)
|+.+|+.=+.+|++--.+++.+...+ +++...+.+.++.+++. ... +-+|+| -+.-..+++.++
T Consensus 23 L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~--v~vivGG~~~i~~~d~~~~ 100 (128)
T cd02072 23 FTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD--ILLYVGGNLVVGKQDFEDV 100 (128)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC--CeEEEECCCCCChhhhHHH
Confidence 44455555555555555555444322 35667788899999888 643 334555 333466778888
Q ss_pred HHHHHhcCCCeE
Q psy2383 189 LNYAIQYSPPHL 200 (391)
Q Consensus 189 l~~~~~l~~~~i 200 (391)
.+.+.++|++.+
T Consensus 101 ~~~L~~~Gv~~v 112 (128)
T cd02072 101 EKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHcCCCEE
Confidence 888999999866
No 254
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=80.59 E-value=11 Score=26.11 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=31.4
Q ss_pred hhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeC
Q psy2383 337 PNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPT 374 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT 374 (391)
...+.+.++++...+...+..|.+.|+++.. +..+++|
T Consensus 28 ~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~~~~~~l~ 66 (66)
T cd07377 28 ERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFVA 66 (66)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 6678889999888889999999999999865 4566665
No 255
>PRK03906 mannonate dehydratase; Provisional
Probab=80.52 E-value=6 Score=39.05 Aligned_cols=83 Identities=8% Similarity=0.131 Sum_probs=42.4
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE--------eEecCCCC--CCHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL--------DLIYALPN--QTLSE 184 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~--------dlI~GlPg--qt~e~ 184 (391)
++..|+.+++.|++.|.-.+-... .|..=+.+++.+.-+.+.++ +. +++ |+..|.|+ +-.+.
T Consensus 12 d~~~l~~~rQ~G~~~iv~~l~~~~------~g~~W~~~~i~~~~~~ie~~Gl~-~~vvEs~pv~~~Ik~g~~~rd~~ie~ 84 (385)
T PRK03906 12 DPVTLEDIRQPGATGIVTALHDIP------VGEVWPVEEILARKAEIEAAGLE-WSVVESVPVHEDIKTGTPNRDRYIEN 84 (385)
T ss_pred CcchHHHHhcCCCCceeecCCCCC------CCCCCCHHHHHHHHHHHHHcCCe-EEEEeCCCccHHHHcCCCCHHHHHHH
Confidence 344555566666666655443322 22334555555555555555 32 333 55566654 33455
Q ss_pred HHHHHHHHHhcCCCeEEEeccc
Q psy2383 185 LMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+.++++-+-+.+++-| +|.++
T Consensus 85 y~~sirnlg~~GI~~i-cYnfm 105 (385)
T PRK03906 85 YKQTLRNLAAAGIKVV-CYNFM 105 (385)
T ss_pred HHHHHHHHHhcCCcEE-EecCc
Confidence 5556666656666544 44444
No 256
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=80.44 E-value=2.6 Score=30.97 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEcCCe---------EEeCcchHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRNNKN---------IKPTSFGRYFL 381 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~~~~---------~~lT~~G~~~~ 381 (391)
.++...+.+.|..|++.|+|+..... +.+|++|+-.+
T Consensus 28 ~i~~g~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~~~l 73 (75)
T PF03551_consen 28 KISPGSLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGREEL 73 (75)
T ss_dssp ETTHHHHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHHHHH
T ss_pred ccChhHHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHHHHh
Confidence 34556688999999999999865433 89999998754
No 257
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=80.40 E-value=15 Score=37.21 Aligned_cols=81 Identities=14% Similarity=0.289 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+..+.+++... +++.|++.+ |..++.|..+.+++..+++.. +.++.+=++ .+.-....++.+
T Consensus 162 ~~y~~~~a~~l~~~-------Gad~I~IkD-taG~l~P~~v~~Lv~alk~~~----~~pi~~H~Hnt~GlA~An~laAi- 228 (468)
T PRK12581 162 LNYYLSLVKELVEM-------GADSICIKD-MAGILTPKAAKELVSGIKAMT----NLPLIVHTHATSGISQMTYLAAV- 228 (468)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEECC-CCCCcCHHHHHHHHHHHHhcc----CCeEEEEeCCCCccHHHHHHHHH-
Confidence 34556666666532 578999977 778899999999999998753 245555553 333345555555
Q ss_pred HCCCCEEEEecCCCCH
Q psy2383 125 IIGINRLSIGIQSFNN 140 (391)
Q Consensus 125 ~~Gv~risiGvqS~~~ 140 (391)
++|++.|...+-++.+
T Consensus 229 eAGad~vD~ai~g~g~ 244 (468)
T PRK12581 229 EAGADRIDTALSPFSE 244 (468)
T ss_pred HcCCCEEEeeccccCC
Confidence 7899999998876544
No 258
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=80.31 E-value=17 Score=36.84 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+..+.+++... +++.|++.+ |-.++.|..+.+++..+++.+++ .|.+=+ +.+.-....++.+ +
T Consensus 153 e~~~~~a~~l~~~-------Gad~I~i~D-t~G~l~P~~v~~Lv~~lk~~~~v----pI~~H~Hnt~GlA~AN~laAi-e 219 (467)
T PRK14041 153 EYYLEFARELVDM-------GVDSICIKD-MAGLLTPKRAYELVKALKKKFGV----PVEVHSHCTTGLASLAYLAAV-E 219 (467)
T ss_pred HHHHHHHHHHHHc-------CCCEEEECC-ccCCcCHHHHHHHHHHHHHhcCC----ceEEEecCCCCcHHHHHHHHH-H
Confidence 4555555666532 578899987 77888999999999999998653 344444 3333345555555 6
Q ss_pred CCCCEEEEecCCCCH
Q psy2383 126 IGINRLSIGIQSFNN 140 (391)
Q Consensus 126 ~Gv~risiGvqS~~~ 140 (391)
+|++.|...+-++.+
T Consensus 220 aGad~vD~sv~~~g~ 234 (467)
T PRK14041 220 AGADMFDTAISPFSM 234 (467)
T ss_pred hCCCEEEeeccccCC
Confidence 899999988875444
No 259
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=80.09 E-value=17 Score=36.72 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+..+.+++... +++.|++.+ |-.++.|..+.+++..+++.++ ..+.+=+ +.+.-....++.+ +
T Consensus 154 ~~~~~~a~~l~~~-------Gad~I~i~D-t~G~l~P~~v~~lv~alk~~~~----~pi~~H~Hnt~GlA~AN~laAi-e 220 (448)
T PRK12331 154 DYFVKLAKEMQEM-------GADSICIKD-MAGILTPYVAYELVKRIKEAVT----VPLEVHTHATSGIAEMTYLKAI-E 220 (448)
T ss_pred HHHHHHHHHHHHc-------CCCEEEEcC-CCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCCcHHHHHHHHH-H
Confidence 4555566666532 578899987 7788999999999999998865 2444444 3333345555555 6
Q ss_pred CCCCEEEEecCCCCH
Q psy2383 126 IGINRLSIGIQSFNN 140 (391)
Q Consensus 126 ~Gv~risiGvqS~~~ 140 (391)
+|++.|...+-++.+
T Consensus 221 aGad~vD~sv~glg~ 235 (448)
T PRK12331 221 AGADIIDTAISPFAG 235 (448)
T ss_pred cCCCEEEeeccccCC
Confidence 899999988875443
No 260
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=79.66 E-value=20 Score=33.53 Aligned_cols=100 Identities=9% Similarity=0.192 Sum_probs=66.2
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.+++.|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +.+..+..+++|++.+.+..-.+..
T Consensus 31 Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~--- 105 (281)
T cd00408 31 GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--GRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK--- 105 (281)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC---
Confidence 68889988844 566788888999998887643 34556665544333 3456667788899999996655332
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQ 180 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 180 (391)
.+.+++.+-.+.+.+..+ +-+ +||..|.-
T Consensus 106 ------~~~~~~~~~~~~ia~~~~-~pi-~iYn~P~~ 134 (281)
T cd00408 106 ------PSQEGIVAHFKAVADASD-LPV-ILYNIPGR 134 (281)
T ss_pred ------CCHHHHHHHHHHHHhcCC-CCE-EEEECccc
Confidence 456677777777666511 223 46777754
No 261
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=78.86 E-value=14 Score=30.05 Aligned_cols=50 Identities=30% Similarity=0.325 Sum_probs=37.4
Q ss_pred ChhHHHHHhC-CCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTG-INIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
-..++.+.-+ ++..-+-..|..|++.|++..+. -.+.||++|+-+...+.
T Consensus 38 RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~~vl~ 95 (120)
T COG1733 38 RFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLLPVLL 95 (120)
T ss_pred cHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHHHHHH
Confidence 4555555444 55445678899999999999774 36899999999887664
No 262
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=78.84 E-value=17 Score=34.34 Aligned_cols=102 Identities=10% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.+++.|.| ...|+.++-.++++.+.+... ....+-+-+...++ ..+..+..+++|++.+.+..-.+..
T Consensus 34 ~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~-- 109 (292)
T PRK03170 34 NGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN--GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNK-- 109 (292)
T ss_pred cCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC--CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCC--
Confidence 368999988744 556788888999998887632 33455554443333 3566677788999999997655321
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCC
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT 181 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 181 (391)
.+.+++.+-.+.+.+..+ +.+ ++|..|..|
T Consensus 110 -------~~~~~i~~~~~~ia~~~~-~pv-~lYn~P~~~ 139 (292)
T PRK03170 110 -------PTQEGLYQHFKAIAEATD-LPI-ILYNVPGRT 139 (292)
T ss_pred -------CCHHHHHHHHHHHHhcCC-CCE-EEEECcccc
Confidence 245667777766665521 223 467778644
No 263
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=78.62 E-value=8.8 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.5
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
+..++.+.++++...+...++.|++.|++....
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 677788999998888899999999999997554
No 264
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.58 E-value=31 Score=32.65 Aligned_cols=111 Identities=12% Similarity=0.188 Sum_probs=70.1
Q ss_pred eEEEEeCCCCCCCC--------HHH------HHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 70 HTIFIGGGTPSLIS--------DTG------LDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 70 ~~i~~gGGtps~l~--------~~~------l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
..+..|||.|--++ +.. +.+.+..+++.++. ...|.+|++ |.+.+....++|++.|-++
T Consensus 151 ~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~--~~~I~VEv~----tleea~eA~~~GaD~I~LD- 223 (288)
T PRK07428 151 YATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPY--PLTIEVETE----TLEQVQEALEYGADIIMLD- 223 (288)
T ss_pred HHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCC--CCEEEEECC----CHHHHHHHHHcCCCEEEEC-
Confidence 45677887743322 111 34455555665542 234555532 5666767778999999998
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 136 qS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
+.+.+++.++++.+++..+++-+-.+=|+ |.+ ++....+.|+|.|++-.++.
T Consensus 224 -------------n~~~e~l~~av~~~~~~~~~i~leAsGGI---t~~----ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 224 -------------NMPVDLMQQAVQLIRQQNPRVKIEASGNI---TLE----TIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred -------------CCCHHHHHHHHHHHHhcCCCeEEEEECCC---CHH----HHHHHHHcCCCEEEEchhhh
Confidence 56778888888887654333545444445 443 44556788999999887653
No 265
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=78.25 E-value=12 Score=34.88 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=44.8
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCeEEeCcchHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~~~lT~~G~~~~~~i 384 (391)
.++...++.+..|.+...+...|+.|++.||+..+ +++++||++...+...+
T Consensus 25 ~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l~~~~ 78 (263)
T PRK09834 25 GGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLSEGF 78 (263)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHHHHhh
Confidence 35889999999999888889999999999999875 68899999988776654
No 266
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=78.22 E-value=8.4 Score=25.97 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=31.2
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
..++...++.+..|.+...+...|..|++.|+++.++
T Consensus 16 ~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~dp 52 (52)
T PF09339_consen 16 GGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERDP 52 (52)
T ss_dssp BSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecCc
Confidence 3457889999999998878889999999999999864
No 267
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=78.02 E-value=35 Score=34.62 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=76.7
Q ss_pred CeeEEEEeCC-CCCC----CCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-TPSL----ISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-tps~----l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.++=++|| |+.. +..+..++ ++.+++..+ +..+.+-.+ |+++-+..++..++.|++.+-
T Consensus 48 G~~siE~wGGAtfd~~~rfl~edpwer-lr~~r~~~~---nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~R 123 (468)
T PRK12581 48 GYYSLECWGGATFDACIRFLNEDPWER-LRTLKKGLP---NTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFR 123 (468)
T ss_pred CCCEEEecCCcchhhhhcccCCCHHHH-HHHHHHhCC---CCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEE
Confidence 5677765555 5442 34444444 456666543 344444333 345556678888999998777
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+.- .+ ...+.+..+++.+++. .. .+++. .-+-|..|.+-+.+..+.+.+.|++.|.+-
T Consensus 124 ifd---------~l---nd~~n~~~ai~~ak~~G~~~~~~i~-yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik 183 (468)
T PRK12581 124 IFD---------AL---NDPRNIQQALRAVKKTGKEAQLCIA-YTTSPVHTLNYYLSLVKELVEMGADSICIK 183 (468)
T ss_pred Ecc---------cC---CCHHHHHHHHHHHHHcCCEEEEEEE-EEeCCcCcHHHHHHHHHHHHHcCCCEEEEC
Confidence 642 22 2567788899999988 43 12222 224688899999999999999999987553
No 268
>PRK09875 putative hydrolase; Provisional
Probab=77.85 E-value=65 Score=30.58 Aligned_cols=178 Identities=11% Similarity=0.072 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHhccCcccCCCeeEE-EEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHh
Q psy2383 45 SEKKYLEALLIDVELSLPIILNRKIHTI-FIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSY 123 (391)
Q Consensus 45 ~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l 123 (391)
..+...+.+++||..-.+. .+.+...| =+|-+.+. +++.. ++++++..+.- ...++.|++=+.+.+...+.++.+
T Consensus 97 ~~e~la~~~i~ei~~Gi~g-t~ikaGvIGeiG~~~~~-it~~E-~kvl~Aaa~a~-~~TG~pi~~Ht~~~~~g~e~l~il 172 (292)
T PRK09875 97 SVQELAQEMVDEIEQGIDG-TELKAGIIAEIGSSEGK-ITPLE-EKVFIAAALAH-NQTGRPISTHTSFSTMGLEQLALL 172 (292)
T ss_pred CHHHHHHHHHHHHHHhhcc-CCCcccEEEEEecCCCC-CCHHH-HHHHHHHHHHH-HHHCCcEEEcCCCccchHHHHHHH
Confidence 3466777888888765321 11112223 33433222 34433 45555544321 233566776665666778899999
Q ss_pred HHCCC--CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC-CCHHHHHHHHHHHHhcC-CCe
Q psy2383 124 SIIGI--NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN-QTLSELMLDLNYAIQYS-PPH 199 (391)
Q Consensus 124 ~~~Gv--~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg-qt~e~~~~~l~~~~~l~-~~~ 199 (391)
++.|+ +||.||=-. +..+.+...+.+ +..-.+..| .+|... ...+...+.+..+.+.| .++
T Consensus 173 ~e~Gvd~~rvvi~H~d----------~~~d~~~~~~l~----~~G~~l~fD-~~g~~~~~pd~~r~~~i~~L~~~Gy~dr 237 (292)
T PRK09875 173 QAHGVDLSRVTVGHCD----------LKDNLDNILKMI----DLGAYVQFD-TIGKNSYYPDEKRIAMLHALRDRGLLNR 237 (292)
T ss_pred HHcCcCcceEEEeCCC----------CCCCHHHHHHHH----HcCCEEEec-cCCCcccCCHHHHHHHHHHHHhcCCCCe
Confidence 99999 899998322 234444333333 341125565 446543 45567788888888989 999
Q ss_pred EEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecc
Q psy2383 200 LSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEI 248 (391)
Q Consensus 200 is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~ 248 (391)
|-+.. ..-+.+.+.... -+ -....+......|.++|+.+=.+
T Consensus 238 ilLS~-D~~~~~~~~~~g---g~---G~~~i~~~~ip~L~~~Gvse~~I 279 (292)
T PRK09875 238 VMLSM-DITRRSHLKANG---GY---GYDYLLTTFIPQLRQSGFSQADV 279 (292)
T ss_pred EEEeC-CCCCcccccccC---CC---ChhHHHHHHHHHHHHcCCCHHHH
Confidence 97632 221111111111 11 12334556677888889875443
No 269
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=77.74 E-value=23 Score=32.95 Aligned_cols=65 Identities=6% Similarity=0.124 Sum_probs=43.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|++.+ |-..+.|+++.+++..+++.++. .++.+=+ +.+.-....+..+ ++|++.|.-.+-.
T Consensus 154 G~d~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hn~~GlA~AN~laAi-~aGa~~vd~s~~G 220 (263)
T cd07943 154 GADCVYVTD-SAGAMLPDDVRERVRALREALDP---TPVGFHGHNNLGLAVANSLAAV-EAGATRIDGSLAG 220 (263)
T ss_pred CCCEEEEcC-CCCCcCHHHHHHHHHHHHHhCCC---ceEEEEecCCcchHHHHHHHHH-HhCCCEEEeeccc
Confidence 467888866 77778899999999999887653 2334333 3332344555555 5799888776644
No 270
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=77.69 E-value=14 Score=25.92 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=31.5
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
...+....+++.+++++..+-..+..|.+.||+..+.
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 3567888899999999888999999999999998765
No 271
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=77.54 E-value=13 Score=29.08 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCeEEc------C---CeEEeCcchHHHHHHHHHH
Q psy2383 349 KIIESKLKNAEKLGLLKRN------N---KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 349 ~~~~~~l~~l~~~gl~~~~------~---~~~~lT~~G~~~~~~i~~~ 387 (391)
..+.+.|..|++.|||+.. + ..+.+|++|+-..+.....
T Consensus 40 gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l~~~~~~ 87 (100)
T TIGR03433 40 GSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQLAAETES 87 (100)
T ss_pred CcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 3578999999999999872 1 3489999999988876543
No 272
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=77.31 E-value=66 Score=30.37 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred CeeEEEEeC-----CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGG-----GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gG-----Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+-|-+|| |.+.+-..+++++++..|+..-. ..++.+++ +|...+.++..-++|++-|
T Consensus 51 GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~-~~~~~ISI----DT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 51 GATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQ-RFEVWISV----DTSKPEVIRESAKAGAHII 114 (282)
T ss_pred CCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEE----ECCCHHHHHHHHHcCCCEE
Confidence 567888885 33333344577776655544321 01345666 4678888888778897654
No 273
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=76.84 E-value=9.6 Score=26.63 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=35.9
Q ss_pred HHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 324 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
.++..|....+....++.+.+|.+...+...|+.|++.|||+..
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEe
Confidence 34445556788999999999999888888999999999999864
No 274
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=76.83 E-value=39 Score=31.93 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=69.1
Q ss_pred eEEEEeCCCCCCCCHH-----------------HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEE
Q psy2383 70 HTIFIGGGTPSLISDT-----------------GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 70 ~~i~~gGGtps~l~~~-----------------~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ris 132 (391)
..+..|||.|--++-. .+...+..+++..+ ...|.+|+. +.+.++...++|++.|-
T Consensus 142 ~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~---~~kIeVEv~----tleqa~ea~~agaDiI~ 214 (284)
T PRK06096 142 QAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAP---EKKIVVEAD----TPKEAIAALRAQPDVLQ 214 (284)
T ss_pred HHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCC---CCCEEEECC----CHHHHHHHHHcCCCEEE
Confidence 4567788887633221 23445555565543 345777754 67788888899999999
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+ -+.+++++.++++.+++..+++-+..==| =|+ +++....+.|+|.|++-.++
T Consensus 215 L--------------Dn~~~e~l~~av~~~~~~~~~~~leaSGG---I~~----~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 215 L--------------DKFSPQQATEIAQIAPSLAPHCTLSLAGG---INL----NTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred E--------------CCCCHHHHHHHHHHhhccCCCeEEEEECC---CCH----HHHHHHHhcCCCEEEECccc
Confidence 8 24567778888887764423343433333 344 35566678899999887764
No 275
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=76.71 E-value=25 Score=36.08 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=49.2
Q ss_pred hHHCCCCEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCC---CHHHHHHHHHHHHhcC
Q psy2383 123 YSIIGINRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ---TLSELMLDLNYAIQYS 196 (391)
Q Consensus 123 l~~~Gv~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq---t~e~~~~~l~~~~~l~ 196 (391)
++.+|+.+|.+-+=+.+-.....+++.. ..+.+.++++.+++. .. .+.||.|.. +++-+.+.++.+.+.|
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~----~v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFH----DIQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCc----eEEeccccccccCHHHHHHHHHHHHhcC
Confidence 3445888999887666666666777542 334455666666666 32 245666543 3555677888899999
Q ss_pred CCeEEE
Q psy2383 197 PPHLSL 202 (391)
Q Consensus 197 ~~~is~ 202 (391)
++.|.+
T Consensus 253 ad~I~l 258 (503)
T PLN03228 253 ATSVGI 258 (503)
T ss_pred CCEEEE
Confidence 998744
No 276
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=76.60 E-value=20 Score=31.29 Aligned_cols=113 Identities=8% Similarity=0.061 Sum_probs=69.8
Q ss_pred HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc--cceEeEecCCCC-----CC------HHHH
Q psy2383 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN--NFNLDLIYALPN-----QT------LSEL 185 (391)
Q Consensus 120 l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~--~v~~dlI~GlPg-----qt------~e~~ 185 (391)
++.++++|++.|.+......+.... ...+.+..+.++++ +. .++.......+. .. .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Confidence 4678999999999987766655544 55677777778887 54 233434333332 22 7888
Q ss_pred HHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
.+.++.+..++++.+.+.+-....+.. .. .....+...+.+..+.+...+.|..
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~----~~-~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPE----DD-TEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTT----SS-HHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCceeecCcccccccC----CC-HHHHHHHHHHHHHHHHhhhhhhcce
Confidence 999999999999998877531000000 00 0011234455666777777777743
No 277
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=76.59 E-value=15 Score=28.38 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=37.6
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC--CeEEeC
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN--KNIKPT 374 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~--~~~~lT 374 (391)
...++...++.+..|.+.+.+...|+.|++.|+|..++ +.+.++
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 45678888999999999888899999999999999887 666654
No 278
>KOG3411|consensus
Probab=76.51 E-value=5.8 Score=32.39 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=39.3
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHHHHcc
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~~~f~ 389 (391)
.|+-.+.|....| .-.+..|+.|+..|+++.+. +.=+||+.|+.-+|.|+....
T Consensus 85 rGvrPsh~~~as~---~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~ 139 (143)
T KOG3411|consen 85 RGVRPSHFCDASG---GIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIR 139 (143)
T ss_pred CCCCChhhhcccc---HHHHHHHHHHHhCCceeeCCCCcceeCcccchhHHHHHHHHH
Confidence 4454454444322 22477899999999999874 567899999999999987654
No 279
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.45 E-value=34 Score=33.15 Aligned_cols=66 Identities=5% Similarity=0.116 Sum_probs=46.2
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|++.+ |...+.|+++.+++..+++.++ +++++.+=++ ...-....+..+ ++|+++|.-.+-.
T Consensus 157 Ga~~i~i~D-T~G~~~P~~v~~~v~~l~~~l~--~~i~ig~H~HnnlGla~ANslaAi-~aGa~~iD~Sl~G 224 (337)
T PRK08195 157 GAQCVYVVD-SAGALLPEDVRDRVRALRAALK--PDTQVGFHGHNNLGLGVANSLAAV-EAGATRIDGSLAG 224 (337)
T ss_pred CCCEEEeCC-CCCCCCHHHHHHHHHHHHHhcC--CCCeEEEEeCCCcchHHHHHHHHH-HhCCCEEEecChh
Confidence 578899987 6777899999999999998863 3455655553 322234455555 6899988765543
No 280
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=76.13 E-value=7.7 Score=26.89 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=32.1
Q ss_pred hhhcCC--CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 329 LRLKDG--FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 329 lr~~~g--~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
+....+ +...++.+.++.+...+...++.|++.|||+..
T Consensus 14 l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 14 LARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 444455 888999999999888888999999999999875
No 281
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=76.08 E-value=22 Score=37.30 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+..+.+++... +++.|++.+ |..++.|..+.+++..|++.++ .+|.+=++ .+.-....++.+
T Consensus 153 ~e~~~~~ak~l~~~-------Gad~I~IkD-taG~l~P~~v~~lv~alk~~~~----ipi~~H~Hnt~Gla~an~laAi- 219 (596)
T PRK14042 153 LDNFLELGKKLAEM-------GCDSIAIKD-MAGLLTPTVTVELYAGLKQATG----LPVHLHSHSTSGLASICHYEAV- 219 (596)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEeCC-cccCCCHHHHHHHHHHHHhhcC----CEEEEEeCCCCCcHHHHHHHHH-
Confidence 34555566676542 578899977 7788999999999999998764 35555553 332234455554
Q ss_pred HCCCCEEEEecCCCCH
Q psy2383 125 IIGINRLSIGIQSFNN 140 (391)
Q Consensus 125 ~~Gv~risiGvqS~~~ 140 (391)
++|++.|...+-++..
T Consensus 220 eaGad~iD~ai~glGg 235 (596)
T PRK14042 220 LAGCNHIDTAISSFSG 235 (596)
T ss_pred HhCCCEEEeccccccC
Confidence 7899999988877544
No 282
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=75.54 E-value=11 Score=36.37 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCCeeEEEEeCCCCCCCCHHHH--------HHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 66 NRKIHTIFIGGGTPSLISDTGL--------DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 66 ~~~~~~i~~gGGtps~l~~~~l--------~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
..+++.|++++.+.++++++.+ +++++.+++.-. . ..-+.+. .-+...++.+++.|++-++++-..
T Consensus 193 ~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~-~-~~~lH~c----G~~~~~~~~l~~~g~d~~~~~~~~ 266 (343)
T PF01208_consen 193 EAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAGK-D-PVILHIC----GNTTPILDDLADLGADVLSVDEKV 266 (343)
T ss_dssp HTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHET-E--EEEEET----THG-GGHHHHHTSS-SEEEE-TTS
T ss_pred HhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCC-C-ceEEEEC----CchHHHHHHHHhcCCCEEEEcCCC
Confidence 4467889888899999999875 555566655411 0 1222222 224458999999999988874211
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHH-hh--cccceEeEecCCCCCCHHHHHHHHHHHHh
Q psy2383 138 FNNKYLNILGRTHDSKQAKYAIEIAK-QY--FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194 (391)
Q Consensus 138 ~~~~~l~~l~R~~~~~~~~~~i~~~~-~~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~ 194 (391)
++.++.+.+. +. .-+++. .--|. -|.+++.+.++.+++
T Consensus 267 ----------------~~~~~~~~~~~~~~l~Gni~~--~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 267 ----------------DLAEAKRKLGDKIVLMGNIDP--VSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp -----------------HHHHHHHHTTSSEEEEEB-G---GGGG-S-HHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHhCCCeEEECCCCc--ccccc-CCHHHHHHHHHHHHH
Confidence 2223333332 22 223333 22233 688999988888887
No 283
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=75.52 E-value=54 Score=33.62 Aligned_cols=114 Identities=10% Similarity=0.003 Sum_probs=72.8
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCC-HHHHHH
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFN-NKYLNI 145 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~-~~~l~~ 145 (391)
.+.+-|-+|++... -.++.+..+++.+++.++ ..+++ ++.+.+.++.--++|..-|. .+..++ ++++..
T Consensus 177 ~GADIIDIG~~st~-p~~~~v~~~V~~l~~~~~----~pISI----DT~~~~v~eaAL~aGAdiIN-sVs~~~~d~~~~l 246 (499)
T TIGR00284 177 DGADMVALGTGSFD-DDPDVVKEKVKTALDALD----SPVIA----DTPTLDELYEALKAGASGVI-MPDVENAVELASE 246 (499)
T ss_pred CCCCEEEECCCcCC-CcHHHHHHHHHHHHhhCC----CcEEE----eCCCHHHHHHHHHcCCCEEE-ECCccchhHHHHH
Confidence 46788999987432 245567788888876532 45666 46777788777777865443 333332 344332
Q ss_pred hCC------------CCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHH
Q psy2383 146 LGR------------THDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAI 193 (391)
Q Consensus 146 l~R------------~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~ 193 (391)
+.+ ....+...+.++.+.++ +..+-+|-++|.++ ..+.++++.+.
T Consensus 247 ~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~---~~l~~sL~~l~ 304 (499)
T TIGR00284 247 KKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSPPL---LGLLESIIRFR 304 (499)
T ss_pred HHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCcch---HHHHHHHHHHH
Confidence 222 12346788899999999 86789999998642 23666666665
No 284
>PRK15452 putative protease; Provisional
Probab=75.26 E-value=79 Score=31.96 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=40.8
Q ss_pred CeeEEEEeCCCCCC------CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHH------HHHHhHHCCCCEEEEe
Q psy2383 68 KIHTIFIGGGTPSL------ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIE------KFHSYSIIGINRLSIG 134 (391)
Q Consensus 68 ~~~~i~~gGGtps~------l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e------~l~~l~~~Gv~risiG 134 (391)
+++.||+||..+++ ++.+.+++.++.+++. +.++-+-+|.-.-+.+ .++.+.++|++.|-++
T Consensus 23 GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~-----g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 23 GADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL-----GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred CCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc-----CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 58999999875543 4557788888877664 3456555442212333 3677778999988875
No 285
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.18 E-value=59 Score=30.14 Aligned_cols=122 Identities=6% Similarity=0.059 Sum_probs=68.3
Q ss_pred CCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE---e----EecCCCC---
Q psy2383 112 PSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL---D----LIYALPN--- 179 (391)
Q Consensus 112 p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~---d----lI~GlPg--- 179 (391)
|..++ ++.++.++++|++.|.+.+-..++... .-..+.+++.+..+.++++ +. ++. + +-++-|.
T Consensus 13 ~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~Gl~-i~~~~~~~~~~~~~~~~d~~~ 88 (284)
T PRK13210 13 PKHLSWEERLVFAKELGFDFVEMSVDESDERLA---RLDWSKEERLSLVKAIYETGVR-IPSMCLSGHRRFPFGSRDPAT 88 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEecCCcccccc---cccCCHHHHHHHHHHHHHcCCC-ceEEecccccCcCCCCCCHHH
Confidence 44454 789999999999999997644222110 0112445566666677777 65 332 1 0112222
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 180 --QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 180 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
++.+.+++.++.+..+|++.|.+... +.... .. .....+...+.+..+.+...+.|-.
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~-----~~~~~-~~-~~~~~~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGY-----DVYYE-EK-SEETRQRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCc-----ccccc-cc-cHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 14566788888999999999875321 11111 00 0011133345566677777788863
No 286
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=74.86 E-value=40 Score=30.84 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=67.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC-CHHHHHHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF-NNKYLNIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~-~~~~l~~l 146 (391)
+++.+|+-+=+-..-.... ..++..|.+... .++.+- ..-=|.|.++.+-.+|+.++.+|-..+ ||+.++
T Consensus 45 g~~~l~ivDLd~~~g~~~n-~~~i~~i~~~~~----~pv~vg--GGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~-- 115 (241)
T PRK14024 45 GAEWIHLVDLDAAFGRGSN-RELLAEVVGKLD----VKVELS--GGIRDDESLEAALATGCARVNIGTAALENPEWCA-- 115 (241)
T ss_pred CCCEEEEEeccccCCCCcc-HHHHHHHHHHcC----CCEEEc--CCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHH--
Confidence 4566666552211111122 255555555432 234443 333478899999999999999997765 334433
Q ss_pred CCCCCHHHHHHHHHHHHhhcccceEeEe---cCCCCC--CHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 147 GRTHDSKQAKYAIEIAKQYFNNFNLDLI---YALPNQ--TLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 147 ~R~~~~~~~~~~i~~~~~~~~~v~~dlI---~GlPgq--t~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
+.++...+.+. +++|+- +-..|. +..+..+-++.+.+.+++.+.+...+.
T Consensus 116 ----------~i~~~~~~~i~-vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~ 170 (241)
T PRK14024 116 ----------RVIAEHGDRVA-VGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTK 170 (241)
T ss_pred ----------HHHHHhhhhEE-EEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecC
Confidence 33333333322 445551 111232 344556677778899999998887653
No 287
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=74.53 E-value=9.8 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=30.1
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
+...-++..+++...+. ..|+.....-|+..+++.+.||+.|+
T Consensus 15 s~~~AA~~l~is~~~vs~~i~~LE~~lg~~Lf~r~~~~~~lT~~G~ 60 (60)
T PF00126_consen 15 SISAAAEELGISQSAVSRQIKQLEEELGVPLFERSGRGLRLTEAGE 60 (60)
T ss_dssp SHHHHHHHCTSSHHHHHHHHHHHHHHHTS-SEEECSSSEEE-HHHH
T ss_pred CHHHHHHHhhccchHHHHHHHHHHHHhCCeEEEECCCCeeEChhhC
Confidence 45566677777765553 45566666789999999999999995
No 288
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=74.47 E-value=15 Score=26.31 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.1
Q ss_pred CChhHHHHHhCCC-HHHHHHHHHHHHHCCCeEEcCCe
Q psy2383 335 FSPNLFFERTGIN-IKIIESKLKNAEKLGLLKRNNKN 370 (391)
Q Consensus 335 ~~~~~~~~~~~~~-~~~~~~~l~~l~~~gl~~~~~~~ 370 (391)
-...++.+.+|.. ...+...|+.|++.|+|..+.+.
T Consensus 26 Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~~~ 62 (65)
T PF01726_consen 26 PTVREIAEALGLKSTSTVQRHLKALERKGYIRRDPGK 62 (65)
T ss_dssp --HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGCCS
T ss_pred CCHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCCCC
Confidence 3456788999986 77788999999999999988763
No 289
>PF13730 HTH_36: Helix-turn-helix domain
Probab=74.30 E-value=17 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.6
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCe
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLL 364 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~ 364 (391)
+.+.+++..|.+...+...++.|++.|++
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 56788899999877899999999999986
No 290
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=73.91 E-value=23 Score=26.46 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=35.6
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~ 375 (391)
++.+++.++.+.+...+.+.++.|.+.|+++.. ++.+.|+.
T Consensus 26 ~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~ 69 (83)
T PF02082_consen 26 VSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLAR 69 (83)
T ss_dssp BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecC
Confidence 888999999999988889999999999999876 58899875
No 291
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=73.83 E-value=47 Score=31.13 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=60.6
Q ss_pred cEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 104 ISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 104 ~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
..+.+.....+. -.+.++.+.++|++-|.+.+-+-+....+.+ ..+.+.+.+.++.+++. ++ +.+-+- |+
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~--~~~~~~~~eiv~~vr~~~~~p-v~vKl~---~~ 172 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQL--GQDPEAVANLLKAVKAAVDIP-LLVKLS---PY 172 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCccc--ccCHHHHHHHHHHHHHccCCC-EEEEeC---CC
Confidence 345554433222 1345667777899988888765443221111 23567777888888776 33 333332 35
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEecc
Q psy2383 180 QTLSELMLDLNYAIQYSPPHLSLYSL 205 (391)
Q Consensus 180 qt~e~~~~~l~~~~~l~~~~is~y~l 205 (391)
.+.+++.+.++.+.+.++|.|.+..-
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 67889999999999999999988653
No 292
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=73.69 E-value=3.6 Score=39.82 Aligned_cols=83 Identities=11% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHhHHC-CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-------cceEeEecCCCC--CCHHHHH
Q psy2383 118 EKFHSYSII-GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-------NFNLDLIYALPN--QTLSELM 186 (391)
Q Consensus 118 e~l~~l~~~-Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-------~v~~dlI~GlPg--qt~e~~~ 186 (391)
..+..+++. |++.|...+-.... +..-+.+++.+..+.+.++ +. .+.=|+..|.|+ +-.|.++
T Consensus 15 v~l~~irQ~~Gv~giV~al~~~p~------g~~W~~e~i~~~k~~ie~~GL~~~vIEsvpv~e~IklG~~~RD~~Ieny~ 88 (351)
T PF03786_consen 15 VTLWDIRQQPGVTGIVTALHDIPN------GEVWDYEEIRALKERIEAAGLTLSVIESVPVHEDIKLGLPGRDEEIENYK 88 (351)
T ss_dssp S-HHHHCTSTTEEEEEE--SSS-T------TS---HHHHHHHHHHHHCTT-EEEEEES----HHHHCT-TTHHHHHHHHH
T ss_pred chHHHHHHhcCCCCeeeCCCCCCC------CCCCCHHHHHHHHHHHHHcCCeEEEEecCChHHHHhcCCCcHHHHHHHHH
Confidence 345556665 88777776644333 4555777777777777776 43 122256677776 4567778
Q ss_pred HHHHHHHhcCCCeEEEecccc
Q psy2383 187 LDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~y~l~~ 207 (391)
++|+-+.++|++.| +|.++|
T Consensus 89 ~~Irnlg~~GI~vv-cYNFMP 108 (351)
T PF03786_consen 89 QTIRNLGKAGIKVV-CYNFMP 108 (351)
T ss_dssp HHHHHHHHTT--EE-EEE--S
T ss_pred HHHHHHHhcCCCEE-EEEeee
Confidence 88888888888755 777765
No 293
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=73.62 E-value=81 Score=29.65 Aligned_cols=100 Identities=15% Similarity=0.012 Sum_probs=63.4
Q ss_pred HHHHHhHHC-CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcC
Q psy2383 118 EKFHSYSII-GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYS 196 (391)
Q Consensus 118 e~l~~l~~~-Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~ 196 (391)
..++.+.+. |++.|.++--|+.-- .-|.++-.+.++.+.++.. -.+-+|+|....+.++..+..+.+.+.|
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~-------~Lt~~Er~~~~~~~~~~~~-~~~~viagv~~~~~~~ai~~a~~a~~~G 96 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGF-------LLSVEERKQIAEIVAEAAK-GKVTLIAHVGSLNLKESQELAKHAEELG 96 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcc-------cCCHHHHHHHHHHHHHHhC-CCCeEEeccCCCCHHHHHHHHHHHHHcC
Confidence 355556667 888887654332111 1356666677776666622 1356788987788888888889999999
Q ss_pred CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 197 PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 197 ~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
++.+-+.+ |++- .|++++..+.|..+.+.
T Consensus 97 ad~v~~~~-------P~y~-----~~~~~~i~~~~~~v~~a 125 (288)
T cd00954 97 YDAISAIT-------PFYY-----KFSFEEIKDYYREIIAA 125 (288)
T ss_pred CCEEEEeC-------CCCC-----CCCHHHHHHHHHHHHHh
Confidence 98886554 2221 24566666666655544
No 294
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=73.39 E-value=52 Score=30.61 Aligned_cols=83 Identities=10% Similarity=0.141 Sum_probs=45.7
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccce-EeE------ecCCCCC-----CHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFN-LDL------IYALPNQ-----TLS 183 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~-~dl------I~GlPgq-----t~e 183 (391)
.+.++.++++|++.|.+++...+... ..+ ..+.++..+..+.+.++ +. ++ +.+ -++-|.. ..+
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~gl~-i~~~~~~~~~~~~l~~~~~~~r~~~~~ 94 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRL-SRL--DWSREQRLALVNAIIETGVR-IPSMCLSAHRRFPLGSKDKAVRQQGLE 94 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchh-hcc--CCCHHHHHHHHHHHHHcCCC-ceeeecCCCccCcCCCcCHHHHHHHHH
Confidence 56777888888888888765543221 111 12455566666666666 54 32 111 1111111 233
Q ss_pred HHHHHHHHHHhcCCCeEEEe
Q psy2383 184 ELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 184 ~~~~~l~~~~~l~~~~is~y 203 (391)
.+++.++.+.++|.+.|.+.
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~ 114 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLA 114 (279)
T ss_pred HHHHHHHHHHHhCCCEEEec
Confidence 45667777778888777553
No 295
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=73.29 E-value=29 Score=36.47 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+..+.+++... +++.|++-+ |..++.|..+.+++..+++.++ ..|.+=+ +.+.-....+..+ +
T Consensus 155 ~~~~~~a~~l~~~-------Gad~i~i~D-t~G~l~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~GlA~An~laAi-e 221 (593)
T PRK14040 155 QTWVDLAKQLEDM-------GVDSLCIKD-MAGLLKPYAAYELVSRIKKRVD----VPLHLHCHATTGLSTATLLKAI-E 221 (593)
T ss_pred HHHHHHHHHHHHc-------CCCEEEECC-CCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCchHHHHHHHHH-H
Confidence 4555555666532 478899977 7788899999999999998864 3444444 3433355556555 7
Q ss_pred CCCCEEEEecCCCCH
Q psy2383 126 IGINRLSIGIQSFNN 140 (391)
Q Consensus 126 ~Gv~risiGvqS~~~ 140 (391)
+|++.|...+-++..
T Consensus 222 AGa~~vD~ai~glG~ 236 (593)
T PRK14040 222 AGIDGVDTAISSMSM 236 (593)
T ss_pred cCCCEEEeccccccc
Confidence 899999988877554
No 296
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=73.24 E-value=9.1 Score=26.30 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=34.0
Q ss_pred HhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 327 NALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 327 ~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
..+.-..|+...++.+.++.+...+-..++.|++.||++..
T Consensus 10 ~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 10 RILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 34556778999999999999887888999999999999864
No 297
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=73.17 E-value=72 Score=28.85 Aligned_cols=145 Identities=12% Similarity=0.189 Sum_probs=83.8
Q ss_pred HHHHHHHHh-CCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-
Q psy2383 89 YLLKNIKKL-LLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 89 ~ll~~i~~~-~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~- 165 (391)
.+++.+++. -++ ..++.+.+ +| +..++.+.++|++.|++=+|+. .+..+.++.+++.
T Consensus 47 ~~i~~i~~~~~~~--~~dvHLMv~~p----~~~i~~~~~~gad~i~~H~Ea~--------------~~~~~~l~~ik~~g 106 (220)
T PRK08883 47 PICKALRDYGITA--PIDVHLMVKPV----DRIIPDFAKAGASMITFHVEAS--------------EHVDRTLQLIKEHG 106 (220)
T ss_pred HHHHHHHHhCCCC--CEEEEeccCCH----HHHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHcC
Confidence 345556654 222 24566655 34 5688999999999999999973 2356778888887
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK- 244 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~- 244 (391)
.. +.+.+. |+...+.+..-+. .+|.|.+. ++.||+.-.+. .| ...+....+++...++|+.
T Consensus 107 ~k---~Glaln-P~Tp~~~i~~~l~-----~~D~vlvM--tV~PGfgGq~f----i~---~~lekI~~l~~~~~~~~~~~ 168 (220)
T PRK08883 107 CQ---AGVVLN-PATPLHHLEYIMD-----KVDLILLM--SVNPGFGGQSF----IP---HTLDKLRAVRKMIDESGRDI 168 (220)
T ss_pred Cc---EEEEeC-CCCCHHHHHHHHH-----hCCeEEEE--EecCCCCCcee----cH---hHHHHHHHHHHHHHhcCCCe
Confidence 54 444444 6666666654433 46777664 56777652221 12 2333455666777777763
Q ss_pred eecccccccCCccchhhhh-hh-cCCcEEEeCcC
Q psy2383 245 NYEISAYSKTGYESQHNLN-YW-KFGDYLGIGAG 276 (391)
Q Consensus 245 ~ye~~~fa~~g~~~~~n~~-yw-~~~~~lG~G~g 276 (391)
..++. |--...|.. .+ .+.|.+-.|.+
T Consensus 169 ~I~vd-----GGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 169 RLEID-----GGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred eEEEE-----CCCCHHHHHHHHHcCCCEEEEeHH
Confidence 22222 222233432 22 36777777743
No 298
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=72.84 E-value=5.3 Score=34.63 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=41.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+++.|.+-- +++++++++++.++...+ . +.+|+.. .++.+.+..+++.|++.||+|-
T Consensus 100 g~d~I~lD~-----~~~~~~~~~v~~l~~~~~---~--v~ie~SG-GI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 100 GADIIMLDN-----MSPEDLKEAVEELRELNP---R--VKIEASG-GITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp T-SEEEEES------CHHHHHHHHHHHHHHTT---T--SEEEEES-SSSTTTHHHHHHTT-SEEEECH
T ss_pred CCCEEEecC-----cCHHHHHHHHHHHhhcCC---c--EEEEEEC-CCCHHHHHHHHhcCCCEEEcCh
Confidence 467777743 367899999999877633 2 5566554 5899999999999999999984
No 299
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=72.74 E-value=7.7 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=26.6
Q ss_pred CCCH--HHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHH
Q psy2383 345 GINI--KIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYF 380 (391)
Q Consensus 345 ~~~~--~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~ 380 (391)
|.++ ..+...|..|++.||+...+ ..-.+|++|.-+
T Consensus 27 g~~~se~avRrrLr~me~~Glt~~~g~~G~~iT~~G~~~ 65 (66)
T PF08461_consen 27 GEELSEEAVRRRLRAMERDGLTRKVGRQGRIITEKGLDE 65 (66)
T ss_pred ChhhhHHHHHHHHHHHHHCCCccccCCcccccCHHHHhh
Confidence 4444 45788999999999887654 345799999754
No 300
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=72.36 E-value=7.1 Score=37.12 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 381 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~ 381 (391)
..+.+++.++.|.+.......|+.|...|+++.+++++++|+.+..+.
T Consensus 23 p~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l 70 (306)
T TIGR02716 23 PKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMF 70 (306)
T ss_pred CCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhc
Confidence 467788888888887778889999999999999999999999987554
No 301
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=72.32 E-value=88 Score=29.51 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=48.7
Q ss_pred HHHHhHHCC-CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 119 KFHSYSIIG-INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 119 ~l~~l~~~G-v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
.++.+.+.| ++-|.++=-++.-- ..|.++-.+.++.+.+... -.+.+|+|.-+-+.++..+-.+.+.++|+
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~-------~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~~~t~~~i~la~~a~~~Ga 97 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENF-------MLSTEEKKEIFRIAKDEAK-DQIALIAQVGSVNLKEAVELGKYATELGY 97 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccc-------cCCHHHHHHHHHHHHHHhC-CCCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 445556678 88887763222111 1244455555555555511 13557888766778888888888888998
Q ss_pred CeEEEec
Q psy2383 198 PHLSLYS 204 (391)
Q Consensus 198 ~~is~y~ 204 (391)
|.|.+.+
T Consensus 98 d~v~v~~ 104 (290)
T TIGR00683 98 DCLSAVT 104 (290)
T ss_pred CEEEEeC
Confidence 8887754
No 302
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=72.20 E-value=25 Score=32.12 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN 167 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~ 167 (391)
.++..+++..+ .++. ++.+--+.+.++.+.+.|++.+.+|-..+ .+++.+.+.++...+. +.
T Consensus 61 ~~i~~i~~~~~----~pv~--~~GGI~s~~d~~~~l~~G~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~~i~ 123 (243)
T cd04731 61 DVVERVAEEVF----IPLT--VGGGIRSLEDARRLLRAGADKVSINSAAV-----------ENPELIREIAKRFGSQCVV 123 (243)
T ss_pred HHHHHHHHhCC----CCEE--EeCCCCCHHHHHHHHHcCCceEEECchhh-----------hChHHHHHHHHHcCCCCEE
Confidence 44555555432 2334 44444477888888889999999994433 1334455555554432 33
Q ss_pred cceEeEecC-----------CCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 168 NFNLDLIYA-----------LPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 168 ~v~~dlI~G-----------lPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+++|+-.+ -+.+|..+..+-++.+.+.+++.|.+....
T Consensus 124 -~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~ 172 (243)
T cd04731 124 -VSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 172 (243)
T ss_pred -EEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccC
Confidence 56765433 345566667777788889999999887744
No 303
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=72.05 E-value=16 Score=32.54 Aligned_cols=101 Identities=21% Similarity=0.297 Sum_probs=54.1
Q ss_pred EEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCC--C--CHH-------HHHHhHHCCCCEEEEecCCCCHH
Q psy2383 73 FIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPST--F--EIE-------KFHSYSIIGINRLSIGIQSFNNK 141 (391)
Q Consensus 73 ~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~--l--~~e-------~l~~l~~~Gv~risiGvqS~~~~ 141 (391)
..||=|||+ .++..+++.. .+++.+-.+|.. + |++ .++.++++|++.+-+|+-+-|..
T Consensus 31 ~~GGlTPS~-------g~i~~~~~~~----~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~ 99 (201)
T PF03932_consen 31 EVGGLTPSL-------GLIRQAREAV----DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGE 99 (201)
T ss_dssp GGT-B---H-------HHHHHHHHHT----TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSS
T ss_pred cCCCcCcCH-------HHHHHHHhhc----CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCC
Confidence 457778865 2334444432 357888888753 2 443 45667789999999999765543
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhh---cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEE
Q psy2383 142 YLNILGRTHDSKQAKYAIEIAKQY---FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLS 201 (391)
Q Consensus 142 ~l~~l~R~~~~~~~~~~i~~~~~~---~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is 201 (391)
.+.+...+.++.++.. |. -.+|.+ .+..+.++.+.++|+++|-
T Consensus 100 --------iD~~~~~~Li~~a~~~~~tFH-RAfD~~--------~d~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 100 --------IDEEALEELIEAAGGMPVTFH-RAFDEV--------PDPEEALEQLIELGFDRVL 145 (201)
T ss_dssp --------B-HHHHHHHHHHHTTSEEEE--GGGGGS--------STHHHHHHHHHHHT-SEEE
T ss_pred --------cCHHHHHHHHHhcCCCeEEEe-CcHHHh--------CCHHHHHHHHHhcCCCEEE
Confidence 3555566666666543 21 223333 2266788999999999883
No 304
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=71.89 E-value=54 Score=31.02 Aligned_cols=116 Identities=13% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCeeEEEEeCC--CCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGG--TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGG--tps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.|+++|. ....|+.++-.++++.+.+.. .....+-+-+...+. +-+..+..++.|++.+.+..-.+.
T Consensus 33 ~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~--~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~--- 107 (294)
T TIGR02313 33 GGSHAISVGGTSGEPGSLTLEERKQAIENAIDQI--AGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYN--- 107 (294)
T ss_pred cCCCEEEECccCcccccCCHHHHHHHHHHHHHHh--CCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCC---
Confidence 46889999884 466678888889988877653 233455444433222 234556677789999988764322
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH-HHHHHHHHh
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL-MLDLNYAIQ 194 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~-~~~l~~~~~ 194 (391)
..+.+++.+-.+.+.++.+.+.+ ++|..|+.|--++ .+.+..+.+
T Consensus 108 ------~~~~~~l~~~f~~ia~a~~~lpv-~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 108 ------KPNQEALYDHFAEVADAVPDFPI-IIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred ------CCCHHHHHHHHHHHHHhccCCCE-EEEeCchhcCcCCCHHHHHHHHh
Confidence 12445666666666555312444 6889997654333 334455543
No 305
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.77 E-value=25 Score=31.92 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.++..+.+.+... +++.|++.+ |...+.|..+.+++..+++.++- +++.+-+ +...-....+..+ +
T Consensus 137 ~~~~~~~~~~~~~-------g~~~i~l~D-t~G~~~P~~v~~lv~~~~~~~~~---~~l~~H~Hnd~Gla~An~laA~-~ 204 (237)
T PF00682_consen 137 EELLELAEALAEA-------GADIIYLAD-TVGIMTPEDVAELVRALREALPD---IPLGFHAHNDLGLAVANALAAL-E 204 (237)
T ss_dssp HHHHHHHHHHHHH-------T-SEEEEEE-TTS-S-HHHHHHHHHHHHHHSTT---SEEEEEEBBTTS-HHHHHHHHH-H
T ss_pred HHHHHHHHHHHHc-------CCeEEEeeC-ccCCcCHHHHHHHHHHHHHhccC---CeEEEEecCCccchhHHHHHHH-H
Confidence 4444555555433 478899987 77888999999999999998762 4555555 3443355566665 5
Q ss_pred CCCCEEEEecCC
Q psy2383 126 IGINRLSIGIQS 137 (391)
Q Consensus 126 ~Gv~risiGvqS 137 (391)
+|+++|...+-.
T Consensus 205 aGa~~id~t~~G 216 (237)
T PF00682_consen 205 AGADRIDGTLGG 216 (237)
T ss_dssp TT-SEEEEBGGG
T ss_pred cCCCEEEccCcc
Confidence 899999887755
No 306
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=71.65 E-value=14 Score=33.30 Aligned_cols=55 Identities=25% Similarity=0.307 Sum_probs=44.4
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---------CCeEEeCcchHH
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---------NKNIKPTSFGRY 379 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---------~~~~~lT~~G~~ 379 (391)
++..|-...++...++.+.-|++...+..-|+.|++.|++... .-.++||++|.-
T Consensus 16 il~lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 16 ILELLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 3334444678999999999999988899999999999999865 145899999864
No 307
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.48 E-value=19 Score=29.93 Aligned_cols=72 Identities=6% Similarity=-0.120 Sum_probs=48.4
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC-CCCCCHHHHHHHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA-LPNQTLSELMLDLNYAI 193 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G-lPgqt~e~~~~~l~~~~ 193 (391)
.++.++...+.+++-|.++.=+ .++...+.+.++.+++. .+.+ -+++| -+--..+++.++.+.+.
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~-----------~~~~~~~~~~~~~L~~~~~~~~--~i~vGG~~~~~~~~~~~~~~~l~ 109 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLY-----------GHGEIDCRGLREKCIEAGLGDI--LLYVGGNLVVGKHDFEEVEKKFK 109 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcc-----------ccCHHHHHHHHHHHHhcCCCCC--eEEEECCCCCCccChHHHHHHHH
Confidence 3666677777777777665322 35666788888888888 6544 34555 33335566777888889
Q ss_pred hcCCCeE
Q psy2383 194 QYSPPHL 200 (391)
Q Consensus 194 ~l~~~~i 200 (391)
++|++.+
T Consensus 110 ~~G~~~v 116 (137)
T PRK02261 110 EMGFDRV 116 (137)
T ss_pred HcCCCEE
Confidence 9998765
No 308
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=71.46 E-value=82 Score=28.74 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=80.7
Q ss_pred cEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 104 ISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 104 ~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
.++.+.+ || +..++.+.++|++.|++-+|+. .+..++++.+++. .. +.+.+.+. |+..
T Consensus 71 ~DvHLMv~~P----~~~i~~~~~aGad~It~H~Ea~--------------~~~~~~l~~Ik~~g~~-~kaGlaln-P~Tp 130 (228)
T PRK08091 71 KDVHLMVRDQ----FEVAKACVAAGADIVTLQVEQT--------------HDLALTIEWLAKQKTT-VLIGLCLC-PETP 130 (228)
T ss_pred EEEEeccCCH----HHHHHHHHHhCCCEEEEcccCc--------------ccHHHHHHHHHHCCCC-ceEEEEEC-CCCC
Confidence 4666665 44 5689999999999999999974 1355788888888 52 56767776 7777
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-eecccccccCCccchh
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK-NYEISAYSKTGYESQH 260 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~ye~~~fa~~g~~~~~ 260 (391)
.+.+..-+. .+|.|.+- ++.||.. .+.- . +...+....+++.+.++||. ..++. |--...
T Consensus 131 ~~~i~~~l~-----~vD~VLiM--tV~PGfg--GQ~f--~---~~~l~KI~~lr~~~~~~~~~~~IeVD-----GGI~~~ 191 (228)
T PRK08091 131 ISLLEPYLD-----QIDLIQIL--TLDPRTG--TKAP--S---DLILDRVIQVENRLGNRRVEKLISID-----GSMTLE 191 (228)
T ss_pred HHHHHHHHh-----hcCEEEEE--EECCCCC--Cccc--c---HHHHHHHHHHHHHHHhcCCCceEEEE-----CCCCHH
Confidence 777755544 36777655 4566643 1110 1 22344445566777778874 23333 222233
Q ss_pred hhhh--hcCCcEEEeCc
Q psy2383 261 NLNY--WKFGDYLGIGA 275 (391)
Q Consensus 261 n~~y--w~~~~~lG~G~ 275 (391)
|... -.+.|.+=.|.
T Consensus 192 ti~~l~~aGaD~~V~GS 208 (228)
T PRK08091 192 LASYLKQHQIDWVVSGS 208 (228)
T ss_pred HHHHHHHCCCCEEEECh
Confidence 3322 23677776663
No 309
>PLN02321 2-isopropylmalate synthase
Probab=71.16 E-value=90 Score=33.08 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=44.1
Q ss_pred CEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCC---CCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 129 NRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPN---QTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 129 ~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg---qt~e~~~~~l~~~~~l~~~~is~ 202 (391)
.+|.+-+=+.+-...+.+++.. ..+.+.++++.+++. .. ++.|+.|. -+++-+.+.++.+.+.|++.|.+
T Consensus 184 ~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~----~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 184 PRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCE----DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI 259 (632)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCc----eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4788777555555566776532 333355566666665 32 34555553 35777788889999999987744
No 310
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=71.00 E-value=19 Score=34.87 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=40.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.||+.+ |...+.|+++.+++..+++.++ +++++.+=++ ...-....+..+ ++|+++|.-.+-.
T Consensus 156 Ga~~i~i~D-T~G~~~P~~v~~~v~~l~~~l~--~~i~ig~H~HnnlGla~ANslaAi-~aGa~~iD~Sl~G 223 (333)
T TIGR03217 156 GADCVYIVD-SAGAMLPDDVRDRVRALKAVLK--PETQVGFHAHHNLSLAVANSIAAI-EAGATRIDASLRG 223 (333)
T ss_pred CCCEEEEcc-CCCCCCHHHHHHHHHHHHHhCC--CCceEEEEeCCCCchHHHHHHHHH-HhCCCEEEeeccc
Confidence 467788876 5666778888888888887653 3344544442 221133344444 5788887766544
No 311
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.88 E-value=35 Score=32.06 Aligned_cols=115 Identities=10% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.+++.| |....|+.++-.++++.+.+... ....+-+-+...+. +-+..+..+++|++.|.+-...+-
T Consensus 31 ~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~--- 105 (285)
T TIGR00674 31 NGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN--GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYN--- 105 (285)
T ss_pred cCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCC---
Confidence 3688899877 44566788888899988877632 33455555443333 334666677889999999766542
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH-HHHHHHHHh
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL-MLDLNYAIQ 194 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~-~~~l~~~~~ 194 (391)
+ .+.+++.+-.+.+.++.+ +.+ +||..|.-|--.+ .+++..+.+
T Consensus 106 -----~-~~~~~i~~~~~~i~~~~~-~pi-~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 106 -----K-PTQEGLYQHFKAIAEEVD-LPI-ILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred -----C-CCHHHHHHHHHHHHhcCC-CCE-EEEECcHHhcCCCCHHHHHHHHc
Confidence 1 355677777777666521 223 6788885331111 334455554
No 312
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=70.84 E-value=37 Score=27.44 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=44.5
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CC--eEEeCcchHHHHHHHHHHc
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NK--NIKPTSFGRYFLNDLQQIF 388 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~--~~~lT~~G~~~~~~i~~~f 388 (391)
.|...++....++.+.++.+...+..-|..|.+.|||..+ |. .+++.+....|...+...+
T Consensus 24 ~L~~~~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~~~~~~~~~~~~~ 88 (117)
T PRK10141 24 LLRESGELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIEQA 88 (117)
T ss_pred HHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECchHHHHHHHHHHHH
Confidence 3433356788899999999888888999999999999743 33 2677776666666654444
No 313
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.83 E-value=81 Score=29.36 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
+.++.+.+.|++.|.+.=-|+.-. ..|.++-.+.++.+.+... -.+-+|+|..+.+.++..+-.+.+.++|+
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~-------~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~Ga 93 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAP-------TLTDEERKEVIEAVVEAVA-GRVPVIAGVGANSTREAIELARHAEEAGA 93 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHHHHHcCC
Confidence 355556667888877654332111 1355666677777666621 23557888877788888888888888888
Q ss_pred CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 198 PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 198 ~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
+.+.+.+ |.+- .++++...+.|..+.+
T Consensus 94 d~v~v~p-------P~y~-----~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 94 DGVLVVP-------PYYN-----KPSQEGIVAHFKAVAD 120 (281)
T ss_pred CEEEECC-------CcCC-----CCCHHHHHHHHHHHHh
Confidence 8886643 1111 2455666666655444
No 314
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.58 E-value=32 Score=32.26 Aligned_cols=116 Identities=9% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.+++.|.| ...++.+.-.++++.+.+... ....+-+-+...+. +.+..+..+++|++.|.+..-.+.
T Consensus 33 ~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~--- 107 (284)
T cd00950 33 NGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN--GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYN--- 107 (284)
T ss_pred cCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC--CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccC---
Confidence 368899988743 456788888999998887643 33455554443333 456677778899999988755431
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH-HHHHHHHHhc
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL-MLDLNYAIQY 195 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~-~~~l~~~~~l 195 (391)
..+.+++.+-.+.+.+... +-+ ++|..|+-|--.+ .+++..+.+.
T Consensus 108 ------~~~~~~l~~~~~~ia~~~~-~pi-~lYn~P~~~g~~ls~~~~~~L~~~ 153 (284)
T cd00950 108 ------KPSQEGLYAHFKAIAEATD-LPV-ILYNVPGRTGVNIEPETVLRLAEH 153 (284)
T ss_pred ------CCCHHHHHHHHHHHHhcCC-CCE-EEEEChhHhCCCCCHHHHHHHhcC
Confidence 1245667777766666511 223 4677775331111 2344555543
No 315
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=70.35 E-value=94 Score=29.02 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=61.9
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
..++.+.+.|++-|-++=-+. +- -..|.++-.+.++.+.+... -.+.+|.|.-+.+.++..+..+.+.++|+
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstG-E~------~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTG-ES------PTLSDEEHEAVIEAVVEAVN-GRVPVIAGTGSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCc-ch------hhCCHHHHHHHHHHHHHHhC-CCCcEEeccCCccHHHHHHHHHHHHHcCC
Confidence 455566677888887652221 11 12356666777777776621 23567888877788888888888888998
Q ss_pred CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 198 PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 198 ~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
+.|.+.+ | .+ ..+++++..+.|..+.+.
T Consensus 97 d~v~~~~----P---~~-----~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 97 DAALVVT----P---YY-----NKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred CEEEEcc----c---cc-----CCCCHHHHHHHHHHHHhc
Confidence 8876653 1 11 124556666666555443
No 316
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=70.29 E-value=1e+02 Score=29.33 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHH-----
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHS----- 122 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~----- 122 (391)
..+..+.+++... ..+..+.++ ..|..++.+.++.+ ..+++. ++.+.++...++.+++.++.
T Consensus 94 ~~L~~l~~~i~~~------~~~~~isi~-trpd~l~~e~l~~L-~~l~~~-----G~~~~i~lGlQS~~d~~L~~i~Rg~ 160 (302)
T TIGR01212 94 EVLKEMYEQALSY------DDVVGLSVG-TRPDCVPDEVLDLL-AEYVER-----GYEVWVELGLQTAHDKTLKKINRGH 160 (302)
T ss_pred HHHHHHHHHHhCC------CCEEEEEEE-ecCCcCCHHHHHHH-HHhhhC-----CceEEEEEccCcCCHHHHHHHcCcC
Confidence 3445555555431 134556664 36888877654333 333321 22344555555665555544
Q ss_pred -----------hHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC----------
Q psy2383 123 -----------YSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ---------- 180 (391)
Q Consensus 123 -----------l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq---------- 180 (391)
++++|+. ++..+=-+- .+.+.+++.+.++.+.+. ...+.+....=+||-
T Consensus 161 t~~~~~~ai~~l~~~gi~-v~~~lI~Gl--------Pget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~ 231 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIK-VCSHVILGL--------PGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGE 231 (302)
T ss_pred hHHHHHHHHHHHHHcCCE-EEEeEEECC--------CCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCC
Confidence 4455653 443322111 146889999999999998 777888877778873
Q ss_pred ----CHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 181 ----TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 181 ----t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+.++..+.+..+++.=+..+.++.++-...-.+.-.+ .+| .....+...+.+.|++.|-.|
T Consensus 232 ~~~~~~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~~~~~l~~--~~~--~~k~~~l~~i~~~l~~~~~~q 296 (302)
T TIGR01212 232 LKTLSLEEYISLACDFLEHLPPEVVIHRISGDAPRETLIAP--EWC--KNKWEIMNKISEELERRGTYQ 296 (302)
T ss_pred CCCCCHHHHHHHHHHHHHhCCcCeEEEEecCCCCccceEcc--ccc--ccHHHHHHHHHHHHHHcCCcc
Confidence 3344344444444443444557766543211110001 122 456778888888888877554
No 317
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=70.23 E-value=30 Score=32.73 Aligned_cols=116 Identities=13% Similarity=0.200 Sum_probs=69.8
Q ss_pred CC-eeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHH
Q psy2383 67 RK-IHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNK 141 (391)
Q Consensus 67 ~~-~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~ 141 (391)
.+ ++.|+.+|.| ...|+.+.-.++++.+.+... ....+-+-+...+. +-+..+..+++|++-|.+..-.+.
T Consensus 33 ~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~-- 108 (290)
T TIGR00683 33 KMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK--DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYY-- 108 (290)
T ss_pred CCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC--
Confidence 35 8889998844 556788888899988877632 33444444432222 345666677889999998654432
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH-HHHHHHHHh
Q psy2383 142 YLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL-MLDLNYAIQ 194 (391)
Q Consensus 142 ~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~-~~~l~~~~~ 194 (391)
..+.+++.+-.+.+.++-+.+.+ +||..|+.|--++ .+++..+.+
T Consensus 109 -------~~~~~~i~~yf~~v~~~~~~lpv-~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 109 -------KFSFPEIKHYYDTIIAETGGLNM-IVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred -------CCCHHHHHHHHHHHHhhCCCCCE-EEEeCccccccCcCHHHHHHHhc
Confidence 23456666666665544111334 5789997654443 234445544
No 318
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=70.07 E-value=20 Score=32.47 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=66.2
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+++.+++-+=+...-....-..++..+.+..+ ..+.+- ..--+.+.++.+.+.|+++|.+|-..+.+
T Consensus 42 g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~----~pv~~~--GgI~~~e~~~~~~~~Gad~vvigs~~l~d------- 108 (234)
T cd04732 42 GAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG----IPVQVG--GGIRSLEDIERLLDLGVSRVIIGTAAVKN------- 108 (234)
T ss_pred CCCEEEEECCCccccCCCCCHHHHHHHHHhcC----CCEEEe--CCcCCHHHHHHHHHcCCCEEEECchHHhC-------
Confidence 45666665433221101111334444555432 244443 33347888999889999999998766532
Q ss_pred CCCCHHHHHHHHHHHHhh-cccceEeEecC------CCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 148 RTHDSKQAKYAIEIAKQY-FNNFNLDLIYA------LPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 148 R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G------lPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
++.+.++.+...+. +. +++|+-.| .-..+..+..+.++.+.+.+++.+.+....
T Consensus 109 ----p~~~~~i~~~~g~~~i~-~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~ 169 (234)
T cd04732 109 ----PELVKELLKEYGGERIV-VGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDIS 169 (234)
T ss_pred ----hHHHHHHHHHcCCceEE-EEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 33344444444332 22 45554322 112234455566777888999999887654
No 319
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.97 E-value=1e+02 Score=29.27 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.|++.|.| ...|+.+.-.++++.+.+.. .....+-+-+.. ++ +-+..+..+++|++.+.+-.-.+.
T Consensus 40 ~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~--~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~--- 113 (303)
T PRK03620 40 YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETT--AGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLT--- 113 (303)
T ss_pred cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh--CCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 368999998844 56678888889998887753 233455554433 22 345666677789999988443321
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHH
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAI 193 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~ 193 (391)
+ .+.+++.+-.+.+.++.+ +.+ ++|..||-+.. .+++..+.
T Consensus 114 -----~-~~~~~i~~~f~~va~~~~-lpi-~lYn~~g~~l~--~~~l~~L~ 154 (303)
T PRK03620 114 -----E-APQEGLAAHVEAVCKSTD-LGV-IVYNRDNAVLT--ADTLARLA 154 (303)
T ss_pred -----C-CCHHHHHHHHHHHHHhCC-CCE-EEEcCCCCCCC--HHHHHHHH
Confidence 2 245667666666666521 223 45667774332 23444454
No 320
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=69.89 E-value=12 Score=26.33 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=27.7
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK 369 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~ 369 (391)
+...+.++||++...+...+..|.+.|++....+
T Consensus 26 s~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~ 59 (64)
T PF00392_consen 26 SERELAERYGVSRTTVREALRRLEAEGLIERRPG 59 (64)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred CHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECC
Confidence 6677889999988888999999999999987643
No 321
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=69.79 E-value=96 Score=32.62 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCeeEEEEeCC-CCC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEee----------CCCCCCHHHHHHhHHCCCCEE
Q psy2383 67 RKIHTIFIGGG-TPS----LISDTGLDYLLKNIKKLLLFKKNISITLEA----------NPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 67 ~~~~~i~~gGG-tps----~l~~~~l~~ll~~i~~~~~~~~~~eit~e~----------~p~~l~~e~l~~l~~~Gv~ri 131 (391)
.++.++=++|| |+. ++..+.+++ ++.+++..+ +..+.+-. -|+.+-+..++..++.|++.+
T Consensus 38 ~g~~siE~~gGatfd~~~rfl~edpwer-l~~~r~~~p---nt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~ 113 (596)
T PRK14042 38 VGFWAMEVWGGATFDACLRFLKEDPWSR-LRQLRQALP---NTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVF 113 (596)
T ss_pred cCCCEEEeeCCcccceeecccCCCHHHH-HHHHHHhCC---CCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEE
Confidence 35666754444 331 233333333 456666643 44555444 355555668888889999987
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
-+.- +. .+......+++.++++ .. ..++-++ +-|--|++.+.+.++.+.+.|++.|++-
T Consensus 114 Rifd-~l-----------nd~~n~~~~i~~~k~~G~~~~~~i~yt-~sp~~t~e~~~~~ak~l~~~Gad~I~Ik 174 (596)
T PRK14042 114 RVFD-AL-----------NDARNLKVAIDAIKSHKKHAQGAICYT-TSPVHTLDNFLELGKKLAEMGCDSIAIK 174 (596)
T ss_pred EEcc-cC-----------cchHHHHHHHHHHHHcCCEEEEEEEec-CCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 7752 22 2445566788888887 32 1222233 4688999999999999999999877553
No 322
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=69.76 E-value=26 Score=31.64 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=66.1
Q ss_pred CCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH
Q psy2383 67 RKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN 144 (391)
Q Consensus 67 ~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~ 144 (391)
.+++.+++-+ |+..- .... .+++..+.+..+ .++.+- ..--+.+.++.+.++|++.+.+|-..+++.
T Consensus 42 ~g~~~i~v~dld~~~~g-~~~~-~~~i~~i~~~~~----~pv~~~--GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~--- 110 (233)
T PRK00748 42 QGAKWLHLVDLDGAKAG-KPVN-LELIEAIVKAVD----IPVQVG--GGIRSLETVEALLDAGVSRVIIGTAAVKNP--- 110 (233)
T ss_pred cCCCEEEEEeCCccccC-Cccc-HHHHHHHHHHCC----CCEEEc--CCcCCHHHHHHHHHcCCCEEEECchHHhCH---
Confidence 3567777766 33211 1122 233444444322 344443 333478889999999999999997665432
Q ss_pred HhCCCCCHHHHHHHHHHHHhhcccceEeEe------cCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQYFNNFNLDLI------YALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI------~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+.+.+.++...+.+. +++|+- .|.-..+..+..+.++.+.++++++|.+...+
T Consensus 111 --------~~l~ei~~~~~~~i~-vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~ 169 (233)
T PRK00748 111 --------ELVKEACKKFPGKIV-VGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDIS 169 (233)
T ss_pred --------HHHHHHHHHhCCCce-eeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeec
Confidence 223344444333332 456641 22212234445666777888899988777644
No 323
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=69.73 E-value=53 Score=31.03 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~ 124 (391)
..++..+.+++... +++.|++.+ |-..+.|.++.+++..+++.++ +.++.+-+ +...-....+..+
T Consensus 154 ~~~~~~~~~~~~~~-------G~d~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~i~~H~Hn~~Gla~AN~laA~- 221 (287)
T PRK05692 154 PEAVADVAERLFAL-------GCYEISLGD-TIGVGTPGQVRAVLEAVLAEFP---AERLAGHFHDTYGQALANIYASL- 221 (287)
T ss_pred HHHHHHHHHHHHHc-------CCcEEEecc-ccCccCHHHHHHHHHHHHHhCC---CCeEEEEecCCCCcHHHHHHHHH-
Confidence 34555566666432 478899987 6677899999999999998864 23444444 3333345566665
Q ss_pred HCCCCEEEEecCCC
Q psy2383 125 IIGINRLSIGIQSF 138 (391)
Q Consensus 125 ~~Gv~risiGvqS~ 138 (391)
++|+++|...+-.+
T Consensus 222 ~aG~~~id~s~~Gl 235 (287)
T PRK05692 222 EEGITVFDASVGGL 235 (287)
T ss_pred HhCCCEEEEEcccc
Confidence 68999998877653
No 324
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=69.49 E-value=71 Score=29.78 Aligned_cols=156 Identities=11% Similarity=0.111 Sum_probs=77.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC------CHHHHHHhHHCCCCEEEEecCCCCHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF------EIEKFHSYSIIGINRLSIGIQSFNNK 141 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l------~~e~l~~l~~~Gv~risiGvqS~~~~ 141 (391)
+++.|++.-- -+++.....++.+.+.+.-. .-..+++ ++|-.- +.+.++.+.++=...+. -.. .++
T Consensus 71 G~~~V~VQpl--hiipG~Ey~~l~~~v~~~~~--~F~~i~~-g~PLL~~~g~~~~~~D~~~va~aL~~~~~--~~~-~~~ 142 (262)
T PF06180_consen 71 GYTEVVVQPL--HIIPGEEYEKLRATVEAYKH--DFKKIVL-GRPLLYTMGQENSPEDYEAVAEALAEEFP--KKR-KDE 142 (262)
T ss_dssp T--EEEEEE----SCSSHHHHHHHHHHHHHCC--CSSEEEE-E--SCSS-----SHHHHHHHHHHHHCCS---TT--TTE
T ss_pred CCCEEEEeec--ceeCcHhHHHHHHHHHHhhc--cCCeEEe-cccccccccccCChHHHHHHHHHHHHhcc--ccC-CCC
Confidence 4556655431 23456677888888766422 1234544 345333 24444443332100000 000 111
Q ss_pred HHHHhC--CCCCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC
Q psy2383 142 YLNILG--RTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP 217 (391)
Q Consensus 142 ~l~~l~--R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~ 217 (391)
.+-.|| =.|.....+.+++..-+. .+++-+-.+=|.|. +.+.+..+.+.++..|.+.||++..|.=..+..
T Consensus 143 a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~-----~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDm 217 (262)
T PF06180_consen 143 AVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPS-----LEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDM 217 (262)
T ss_dssp EEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSB-----HHHHHHHHHHHT-SEEEEEEESSS--HHHHCCC
T ss_pred EEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCC-----HHHHHHHHHhcCCCeEEEEecccccchhhhhhh
Confidence 111222 234555677777665544 57788888888875 445556677789999999999998886444432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 218 PLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 218 ~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
. -+ +++.| ...|+++||..
T Consensus 218 a--Gd-e~dSW------ks~L~~~G~~v 236 (262)
T PF06180_consen 218 A--GD-EEDSW------KSRLEAAGFEV 236 (262)
T ss_dssp C--SS-STTSH------HHHHHHTT-EE
T ss_pred c--CC-CcchH------HHHHHHCCCEE
Confidence 1 11 22222 35688899874
No 325
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=69.26 E-value=87 Score=29.60 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC-HHHHHHhHHCCCCEEEE-----e----cCCCCHHHHHHhCCCC
Q psy2383 81 LISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE-IEKFHSYSIIGINRLSI-----G----IQSFNNKYLNILGRTH 150 (391)
Q Consensus 81 ~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~-~e~l~~l~~~Gv~risi-----G----vqS~~~~~l~~l~R~~ 150 (391)
..+++.+.++++.+++..+ ..+.+-.+|+.-+ .+.++.+.++|++-|.+ | +.+..+..-...+ +.
T Consensus 139 ~~~~~~~~eiv~~vr~~~~----~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~g-g~ 213 (301)
T PRK07259 139 GTDPELAYEVVKAVKEVVK----VPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTG-GL 213 (301)
T ss_pred ccCHHHHHHHHHHHHHhcC----CCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcC-cc
Confidence 3467788999999998753 4566666664222 35677788999988765 1 1111110000001 01
Q ss_pred C----HHHHHHHHHHHHhhcccceEeEecCCCC-CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHH
Q psy2383 151 D----SKQAKYAIEIAKQYFNNFNLDLIYALPN-QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSND 225 (391)
Q Consensus 151 ~----~~~~~~~i~~~~~~~~~v~~dlI~GlPg-qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~ 225 (391)
+ .....+.+..+++.. ++.+| |.=| .|.++..+-+ ..|.+-|++..-.+. ++.
T Consensus 214 sg~~~~p~~l~~v~~i~~~~---~ipvi-~~GGI~~~~da~~~l----~aGAd~V~igr~ll~--------------~P~ 271 (301)
T PRK07259 214 SGPAIKPIALRMVYQVYQAV---DIPII-GMGGISSAEDAIEFI----MAGASAVQVGTANFY--------------DPY 271 (301)
T ss_pred CCcCcccccHHHHHHHHHhC---CCCEE-EECCCCCHHHHHHHH----HcCCCceeEcHHHhc--------------CcH
Confidence 1 111344445555542 23333 2223 4666665544 568888887763322 123
Q ss_pred HHHHHHHHHHHHHHHCCCcee
Q psy2383 226 ENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 226 ~~~~~~~~~~~~L~~~Gy~~y 246 (391)
...++.+...++|.++||...
T Consensus 272 ~~~~i~~~l~~~~~~~g~~~i 292 (301)
T PRK07259 272 AFPKIIEGLEAYLDKYGIKSI 292 (301)
T ss_pred HHHHHHHHHHHHHHHcCCCCH
Confidence 344555666788999998754
No 326
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=69.14 E-value=17 Score=37.04 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=46.9
Q ss_pred HHhhhh-cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCcchHHHHHH
Q psy2383 326 LNALRL-KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTSFGRYFLND 383 (391)
Q Consensus 326 ~~~lr~-~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~G~~~~~~ 383 (391)
+..|.. ...++...+.+..|.+...+...+..|.+.|+++.+ ...+.||++|.-++..
T Consensus 12 L~~l~~~~~~~~~~~la~~~~~~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~~~~ 73 (494)
T PTZ00326 12 LSKLESENEIVNSLALAESLNIDHQKVVGAIKSLESANYITTEMKKSNTWTLTEEGEDYLKN 73 (494)
T ss_pred HHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHc
Confidence 334443 346888899999999888889999999999999765 5889999999988764
No 327
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=68.96 E-value=44 Score=35.02 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+..+.+++... +++.|++.+ |-.++.|..+.+++..+++.+++ .+.+=+ +.+.-....+..+ +
T Consensus 149 ~~~~~~~~~~~~~-------Gad~I~i~D-t~G~~~P~~v~~lv~~lk~~~~~----pi~~H~Hnt~Gla~An~laAv-e 215 (582)
T TIGR01108 149 ETYLDLAEELLEM-------GVDSICIKD-MAGILTPKAAYELVSALKKRFGL----PVHLHSHATTGMAEMALLKAI-E 215 (582)
T ss_pred HHHHHHHHHHHHc-------CCCEEEECC-CCCCcCHHHHHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHH-H
Confidence 4555566666542 468899977 77888999999999999998752 344444 3333345556555 6
Q ss_pred CCCCEEEEecCCCCH
Q psy2383 126 IGINRLSIGIQSFNN 140 (391)
Q Consensus 126 ~Gv~risiGvqS~~~ 140 (391)
+|++.|...+-++..
T Consensus 216 aGa~~vd~ai~GlG~ 230 (582)
T TIGR01108 216 AGADGIDTAISSMSG 230 (582)
T ss_pred hCCCEEEeccccccc
Confidence 899999988776554
No 328
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.96 E-value=23 Score=33.52 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=45.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|.++- ++++.+++.++.+++.. ..+.+|+.. .++.+.+..+++.|++.||+|--+
T Consensus 216 GaD~I~LDn-----~~~e~l~~av~~~~~~~-----~~i~leAsG-GIt~~ni~~ya~tGvD~Isvgsl~ 274 (288)
T PRK07428 216 GADIIMLDN-----MPVDLMQQAVQLIRQQN-----PRVKIEASG-NITLETIRAVAETGVDYISSSAPI 274 (288)
T ss_pred CCCEEEECC-----CCHHHHHHHHHHHHhcC-----CCeEEEEEC-CCCHHHHHHHHHcCCCEEEEchhh
Confidence 567787762 57788999988876542 245677755 589999999999999999998543
No 329
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.95 E-value=13 Score=35.08 Aligned_cols=60 Identities=10% Similarity=0.201 Sum_probs=45.8
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
+++.|.+-. ++++.+++.+..+++.. ..+.+|+.. .++.+.+..+++.|++.||+|-=+.
T Consensus 219 gaDiI~LDn-----m~~e~vk~av~~~~~~~-----~~v~ieaSG-GI~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 219 GAELVLLDN-----FPVWQTQEAVQRRDARA-----PTVLLESSG-GLTLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CCCEEEeCC-----CCHHHHHHHHHHHhccC-----CCEEEEEEC-CCCHHHHHHHHhcCCCEEEeChhhc
Confidence 467777632 46888999888776542 246777765 5999999999999999999996554
No 330
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=68.63 E-value=14 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=28.4
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
....+.+.++++|++........+++|++.|+|...+
T Consensus 18 ~~~~S~S~lQR~~rIGynrAariid~LE~~GiVs~~~ 54 (65)
T PF09397_consen 18 EGKASISLLQRKFRIGYNRAARIIDQLEEEGIVSPAN 54 (65)
T ss_dssp CTCECHHHHHHHHT--HHHHHHHHHHHHHCTSBE---
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCC
Confidence 4568899999999998777788899999999997654
No 331
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=68.25 E-value=40 Score=31.18 Aligned_cols=80 Identities=6% Similarity=0.092 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII 126 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~ 126 (391)
..++..+.+++... +++.|++.+ |-..+.|+++.+++..+++.+++ ..++.+=-+...-....+..+ ++
T Consensus 138 ~~~~~~~~~~~~~~-------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~--~l~~H~Hn~~Gla~An~laAi-~a 206 (259)
T cd07939 138 PDFLIEFAEVAQEA-------GADRLRFAD-TVGILDPFTTYELIRRLRAATDL--PLEFHAHNDLGLATANTLAAV-RA 206 (259)
T ss_pred HHHHHHHHHHHHHC-------CCCEEEeCC-CCCCCCHHHHHHHHHHHHHhcCC--eEEEEecCCCChHHHHHHHHH-Hh
Confidence 34555555555432 467888877 66778899999999999987652 223333223433345566666 68
Q ss_pred CCCEEEEecCC
Q psy2383 127 GINRLSIGIQS 137 (391)
Q Consensus 127 Gv~risiGvqS 137 (391)
|+++|.-.+-.
T Consensus 207 G~~~vd~s~~G 217 (259)
T cd07939 207 GATHVSVTVNG 217 (259)
T ss_pred CCCEEEEeccc
Confidence 99988876654
No 332
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=67.85 E-value=35 Score=31.25 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=44.0
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 383 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~ 383 (391)
..++...++.+..|.+...+...|..|++.||+..++++++|.++=..+...
T Consensus 22 ~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~~~lg~~ 73 (248)
T TIGR02431 22 RPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGRLFWLTPRVLRLGYA 73 (248)
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEecHHHHHHHHH
Confidence 4578899999999998888889999999999999999999999865544443
No 333
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=67.49 E-value=51 Score=34.21 Aligned_cols=140 Identities=10% Similarity=0.005 Sum_probs=83.0
Q ss_pred CCeeEEEEeCCCCCC---CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCH---------HHHHHhHHCCCCEEEEe
Q psy2383 67 RKIHTIFIGGGTPSL---ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEI---------EKFHSYSIIGINRLSIG 134 (391)
Q Consensus 67 ~~~~~i~~gGGtps~---l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~---------e~l~~l~~~Gv~risiG 134 (391)
.+++.+.|-+=|.+. ...+...++++.+.+... +.+++-..-.++.+ |.++.+-++|+++|+||
T Consensus 279 ~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~----ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~ 354 (538)
T PLN02617 279 DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVF----VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIG 354 (538)
T ss_pred cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCC----CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEC
Confidence 456777776644321 122223455555555432 46787777777655 88999999999999999
Q ss_pred cCCCC-HHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC----------------------------------C
Q psy2383 135 IQSFN-NKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL----------------------------------P 178 (391)
Q Consensus 135 vqS~~-~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl----------------------------------P 178 (391)
-..+. ++..-.-++..+++-+.++.+..-+. +- +++|.--|. -
T Consensus 355 s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~iv-vsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~ 433 (538)
T PLN02617 355 SDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVV-VSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGR 433 (538)
T ss_pred hHHHhChhhhhccccccCHHHHHHHHHHcCCceEE-EEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCc
Confidence 65553 23333344666677677766665443 43 566643221 1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccccCCCc
Q psy2383 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTY 212 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 212 (391)
..|.-+..+-++.+.++|+..|-+.. .-..||.
T Consensus 434 ~~~~~~~~~~~~~~~~~Gageil~t~-id~DGt~ 466 (538)
T PLN02617 434 EGRPIGAYELAKAVEELGAGEILLNC-IDCDGQG 466 (538)
T ss_pred ccCCCCHHHHHHHHHhcCCCEEEEee-ccccccc
Confidence 12344556667788888988884443 3345653
No 334
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=67.01 E-value=1.2e+02 Score=28.75 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=66.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CCC--EEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GIN--RLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv~--risiGvqS~~~~~l 143 (391)
+|+.|=+| .|.. ++.. .+.+..|.+.-...++.++..-++. ..+.++...++ |++ +|.+-+=+.+-...
T Consensus 36 Gv~~IE~g--fP~~-~~~e-~e~~~~i~~~~~~~~~~~~~al~r~---~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~ 108 (284)
T cd07942 36 GFKEIEVG--FPSA-SQTD-FDFVRELIEEDLIPDDVTIQVLTQA---REDLIERTFEALRGAKKAIVHLYNATSPLQRR 108 (284)
T ss_pred CCCEEEEe--CCCC-CHHH-HHHHHHHHHccCCCCCCEEEEEcCC---ChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHH
Confidence 57778776 6876 3333 3455555332111234566555433 23334444444 665 68887755555566
Q ss_pred HHhCCCC--CHHHHHHHHHHHHhh-cccceE--eEecCCCC---CCHHHHHHHHHHHHhc
Q psy2383 144 NILGRTH--DSKQAKYAIEIAKQY-FNNFNL--DLIYALPN---QTLSELMLDLNYAIQY 195 (391)
Q Consensus 144 ~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~--dlI~GlPg---qt~e~~~~~l~~~~~l 195 (391)
+.+++.. ..+.+.++++.+++. ...+++ ..-|+... -.++-+.+.++.+.+.
T Consensus 109 ~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 109 VVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 6777653 344466677777776 543333 34444321 2356677777777776
No 335
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=66.85 E-value=68 Score=30.17 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCC--CCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANP--STFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p--~~l~~e~l~~l~~ 125 (391)
.|+..+++++... +++.|++.+ |-..+.|.++.+++..+++.++ +.++.+=++- +.-....+..+ +
T Consensus 147 ~~~~~~~~~~~~~-------G~~~i~l~D-T~G~~~P~~v~~l~~~l~~~~~---~~~i~~H~Hnd~Gla~AN~laA~-~ 214 (280)
T cd07945 147 DYVFQLVDFLSDL-------PIKRIMLPD-TLGILSPFETYTYISDMVKRYP---NLHFDFHAHNDYDLAVANVLAAV-K 214 (280)
T ss_pred HHHHHHHHHHHHc-------CCCEEEecC-CCCCCCHHHHHHHHHHHHhhCC---CCeEEEEeCCCCCHHHHHHHHHH-H
Confidence 4566666666432 478899977 7778899999999999988753 3455555432 22244455554 5
Q ss_pred CCCCEEEEecCCCC
Q psy2383 126 IGINRLSIGIQSFN 139 (391)
Q Consensus 126 ~Gv~risiGvqS~~ 139 (391)
+|+++|.-.+-.+-
T Consensus 215 aGa~~vd~s~~GlG 228 (280)
T cd07945 215 AGIKGLHTTVNGLG 228 (280)
T ss_pred hCCCEEEEeccccc
Confidence 79999987776544
No 336
>PLN02433 uroporphyrinogen decarboxylase
Probab=66.77 E-value=1.3e+02 Score=29.17 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHH--------HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEe
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYL--------LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIG 134 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~l--------l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiG 134 (391)
.+++.+.+.+..+++++++.++++ ++.+++.. +...+.+-.. .-+ ..++.+++.|++-+|++
T Consensus 191 aGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~---~~~~~ilh~c--G~~-~~~~~~~~~~~~~i~~d 260 (345)
T PLN02433 191 AGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARH---PDVPLILYAN--GSG-GLLERLAGTGVDVIGLD 260 (345)
T ss_pred cCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEeC--CCH-HHHHHHHhcCCCEEEcC
Confidence 356777777778889999887644 44444321 1122222111 112 67899999999977764
No 337
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=66.49 E-value=17 Score=33.65 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=43.2
Q ss_pred HHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 322 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 322 ~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
.+.++..|+...-+...++.+.|+++...+++-|..|+++|++.+.-|...++
T Consensus 7 ~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l~r~~Gga~~~ 59 (256)
T PRK10434 7 QAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLN 59 (256)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEcC
Confidence 45566667776779999999999999888999999999999998776665543
No 338
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=66.27 E-value=39 Score=32.58 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=34.7
Q ss_pred CCeeEEEEeCC--CCCCCCHHHHHHH--------HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEe
Q psy2383 67 RKIHTIFIGGG--TPSLISDTGLDYL--------LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIG 134 (391)
Q Consensus 67 ~~~~~i~~gGG--tps~l~~~~l~~l--------l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiG 134 (391)
.+++.|++.+. ++++++++.++++ ++.+++. ....-+.+..+ +...+..+++.|++-+|+.
T Consensus 192 ~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~---g~~~ilH~CG~----~~~~~~~l~~~g~d~ls~d 262 (340)
T TIGR01463 192 AGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI---GGITVLHICGF----TQPILRDIANNGCFGFSVD 262 (340)
T ss_pred cCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc---CCceEEEECCC----chhhHHHHHHhCCCEEeec
Confidence 45676766653 3457888765544 3344332 11122333332 3457888999999988754
No 339
>PRK12999 pyruvate carboxylase; Reviewed
Probab=66.20 E-value=93 Score=35.55 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=75.3
Q ss_pred CeeEEEEeCC-CCC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEEE
Q psy2383 68 KIHTIFIGGG-TPS----LISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGG-tps----~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ris 132 (391)
++.+|=+||| |+. ++..+..++ ++.+++.. +++.+.+-++ |+.+..+.++...+.|++.+.
T Consensus 570 g~~siE~~ggatfd~~~r~l~e~p~er-l~~~r~~~---~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~r 645 (1146)
T PRK12999 570 NLFSLEMWGGATFDVAYRFLKEDPWER-LAELREAA---PNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFR 645 (1146)
T ss_pred CCCEEEeeCCcchhhhccccCCCHHHH-HHHHHHhC---CCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEE
Confidence 5677766664 322 233333333 45566653 3456666665 667777789999999999888
Q ss_pred EecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-c-ccceEeEe---c--CCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F-NNFNLDLI---Y--ALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 133 iGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~-~~v~~dlI---~--GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+. .+.|+ .+.+..+++.++++ . ..+.+... . .-|--|++-+.+..+.+.++|++.|.+-
T Consensus 646 if-d~lnd-----------~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ik 711 (1146)
T PRK12999 646 IF-DSLNW-----------VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIK 711 (1146)
T ss_pred Ee-ccCCh-----------HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 76 34444 33466777777777 2 22333322 0 0122488888899999999999877543
No 340
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=66.15 E-value=28 Score=25.94 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=39.7
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE---cCCeEEeCcchHHHHH
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR---NNKNIKPTSFGRYFLN 382 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~---~~~~~~lT~~G~~~~~ 382 (391)
..+.|--..+.+..+.+...++..+..|++.||++- ..+...+|.+|-.+++
T Consensus 20 ~~~PVgSk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~s~GriPT~~aYr~~~ 74 (78)
T PF03444_consen 20 TGEPVGSKTIAEELGRSPATIRNEMADLEELGLVESQPHPSGGRIPTDKAYRALN 74 (78)
T ss_pred cCCCcCHHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCCCCCCCcCHHHHHHHc
Confidence 344566666667777777778999999999999974 3578899999976654
No 341
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=65.89 E-value=1.2e+02 Score=28.51 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.++.+.+.|++-|-+.=-++.- -..|.++-.+.++.+.+... -.+.+|.|.-+.+.++..+..+.+.++|++
T Consensus 27 ~i~~l~~~Gv~gi~~~Gs~GE~-------~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 27 LVDYLIANGTDGLVVVGTTGES-------PTLTHEEHEELIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred HHHHHHHcCCCEEEECCcCCcc-------ccCCHHHHHHHHHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHHHHcCCC
Confidence 4455556677777654222111 12355555566666655521 124567777666777777777777777777
Q ss_pred eEEEe
Q psy2383 199 HLSLY 203 (391)
Q Consensus 199 ~is~y 203 (391)
.+.+.
T Consensus 99 ~v~~~ 103 (292)
T PRK03170 99 GALVV 103 (292)
T ss_pred EEEEC
Confidence 76554
No 342
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=65.84 E-value=18 Score=33.57 Aligned_cols=53 Identities=25% Similarity=0.236 Sum_probs=42.5
Q ss_pred HHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 322 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 322 ~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
.+.++..|+-..-+..+++.+.|+++...+++-|..|+++|++....|...++
T Consensus 7 ~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R~hGGa~~~ 59 (253)
T COG1349 7 HQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLLRVHGGAVLP 59 (253)
T ss_pred HHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEEEEeCCEecC
Confidence 34455556666668999999999999888999999999999999866555554
No 343
>COG1695 Predicted transcriptional regulators [Transcription]
Probab=65.72 E-value=10 Score=31.30 Aligned_cols=40 Identities=30% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCCCeEEc---------CCeEEeCcchHHHHHHHHHH
Q psy2383 348 IKIIESKLKNAEKLGLLKRN---------NKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 348 ~~~~~~~l~~l~~~gl~~~~---------~~~~~lT~~G~~~~~~i~~~ 387 (391)
...+.+.|..|++.||++.. ...+++|++|+-.+......
T Consensus 44 ~gtiYp~L~~Le~~Gli~~~~~~~~~g~~rk~Y~lTe~G~~~l~~~~~~ 92 (138)
T COG1695 44 PGTIYPLLKRLEKEGLIESRWEESGGGPPRKYYRLTEKGKEELAELREE 92 (138)
T ss_pred CCcHHHHHHHHHHCCCeEEEecccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 34578999999999999853 25689999999988866543
No 344
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=65.62 E-value=43 Score=38.09 Aligned_cols=79 Identities=15% Similarity=0.287 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+..+.+++... +++.|.+.+ |-.++.|..+.+++..|++.++ ..+.+=++ .+.-....++.+
T Consensus 688 l~y~~~~ak~l~~~-------Gad~I~ikD-t~Gll~P~~~~~Lv~~lk~~~~----~pi~~H~Hdt~Gla~an~laA~- 754 (1143)
T TIGR01235 688 LKYYTNLAVELEKA-------GAHILGIKD-MAGLLKPAAAKLLIKALREKTD----LPIHFHTHDTSGIAVASMLAAV- 754 (1143)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEECC-CcCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCCcHHHHHHHHH-
Confidence 45777777887643 478899977 7788999999999999999864 34555553 332244455554
Q ss_pred HCCCCEEEEecCCC
Q psy2383 125 IIGINRLSIGIQSF 138 (391)
Q Consensus 125 ~~Gv~risiGvqS~ 138 (391)
++|++.|...+-++
T Consensus 755 eaGad~vD~ai~gl 768 (1143)
T TIGR01235 755 EAGVDVVDVAVDSM 768 (1143)
T ss_pred HhCCCEEEecchhh
Confidence 78999999888765
No 345
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=65.51 E-value=38 Score=31.14 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC--CeEEeCcchHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN--KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~--~~~~lT~~G~~~~~~i 384 (391)
.++..+++.+..|.+...+...|..|++.||++.++ ++++|+++=..+....
T Consensus 18 ~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~lg~~~ 71 (246)
T COG1414 18 GGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLELGAAA 71 (246)
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHHHHHHH
Confidence 346799999999999888899999999999999987 5799998755554443
No 346
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=65.39 E-value=21 Score=36.36 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=45.9
Q ss_pred HhhhhcCC-CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCcchHHHHHH
Q psy2383 327 NALRLKDG-FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTSFGRYFLND 383 (391)
Q Consensus 327 ~~lr~~~g-~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~G~~~~~~ 383 (391)
..|..... ++...+.+..|.+...+...+..|.+.|+++.+ ...+.||++|..++..
T Consensus 10 ~~l~~~~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~l~~ 70 (492)
T PLN02853 10 GALSNNEEISDSGQFAASHGLDHNEVVGVIKSLHGFRYVDAQDIKRETWVLTEEGKKYAAE 70 (492)
T ss_pred HHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHc
Confidence 33433343 788889999999888889999999999999765 5889999999988763
No 347
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=65.31 E-value=92 Score=29.92 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=63.2
Q ss_pred CCeeEEEEeCCC--CCCCCHHHHHHHH-HHHHHhCC-CCC-CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHH
Q psy2383 67 RKIHTIFIGGGT--PSLISDTGLDYLL-KNIKKLLL-FKK-NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNK 141 (391)
Q Consensus 67 ~~~~~i~~gGGt--ps~l~~~~l~~ll-~~i~~~~~-~~~-~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~ 141 (391)
.+++.|++.+.. .++++++.++++. ..+++.+. +.. ..-+.+..+ +...++.+++.|++-+|+.-. .
T Consensus 192 aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~----~~~~l~~~~~~g~d~~~~d~~-~--- 263 (339)
T PRK06252 192 AGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGD----LTSILEEMADCGFDGISIDEK-V--- 263 (339)
T ss_pred cCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCC----chHHHHHHHhcCCCeeccCCC-C---
Confidence 357777776643 3478888776553 22222211 111 112333221 356789999999988775421 1
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHh-h--cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCccc
Q psy2383 142 YLNILGRTHDSKQAKYAIEIAKQ-Y--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFF 214 (391)
Q Consensus 142 ~l~~l~R~~~~~~~~~~i~~~~~-~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 214 (391)
+.. ++.+.+.. . ..|+ |-.--+...|.+++++.++.+++.+..-++. ...+.|+||..
T Consensus 264 ---------dl~---~~~~~~g~~~~i~Gni--dp~~~l~~gt~eeI~~~v~~~l~~g~~Il~~-gcgi~~~tp~e 324 (339)
T PRK06252 264 ---------DVK---TAKENVGDRAALIGNV--STSFTLLNGTPEKVKAEAKKCLEDGVDILAP-GCGIAPKTPLE 324 (339)
T ss_pred ---------CHH---HHHHHhCCCeEEEecc--CcHHHhcCCCHHHHHHHHHHHHHcCCCEEcC-CCCCCCCCCHH
Confidence 222 22222211 2 2222 2211233457788888888887765442322 34455666643
No 348
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=65.21 E-value=41 Score=31.29 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~ 124 (391)
..|+..+.+++... +++.|++.+ |-..+.|+++.+++..+++.++- .++.+.+=+ +...-....+..+
T Consensus 142 ~~~~~~~~~~~~~~-------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~-~~i~l~~H~Hn~~GlA~An~laAi- 211 (268)
T cd07940 142 LDFLIEVVEAAIEA-------GATTINIPD-TVGYLTPEEFGELIKKLKENVPN-IKVPISVHCHNDLGLAVANSLAAV- 211 (268)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEECC-CCCCCCHHHHHHHHHHHHHhCCC-CceeEEEEecCCcchHHHHHHHHH-
Confidence 45666666666432 467888877 66778899999999999987641 013333333 3333345566666
Q ss_pred HCCCCEEEEecCC
Q psy2383 125 IIGINRLSIGIQS 137 (391)
Q Consensus 125 ~~Gv~risiGvqS 137 (391)
++|+++|.-.+-.
T Consensus 212 ~aG~~~iD~s~~G 224 (268)
T cd07940 212 EAGARQVECTING 224 (268)
T ss_pred HhCCCEEEEEeec
Confidence 5799988876654
No 349
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=65.20 E-value=44 Score=27.11 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCcchHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTSFGRYF 380 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~G~~~ 380 (391)
.++.+++.+..+.+...+...++.|...|++... ++.+.|+......
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~~i 74 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPEEI 74 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHHHC
Confidence 6899999999999988889999999999999864 3578998776544
No 350
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=65.11 E-value=8.3 Score=27.57 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=33.7
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK 369 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~ 369 (391)
...+....++.+..|.+-..+...|+.|.+.||+...++
T Consensus 19 ~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 19 KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 346688899999999998888999999999999987753
No 351
>PRK07329 hypothetical protein; Provisional
Probab=64.84 E-value=67 Score=29.49 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHHhc--cCcccCCCeeEEEEeCCCCCCCC-HHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC------
Q psy2383 45 SEKKYLEALLIDVELS--LPIILNRKIHTIFIGGGTPSLIS-DTGLDYLLKNIKKLLLFKKNISITLEANPSTF------ 115 (391)
Q Consensus 45 ~~~~y~~~l~~Ei~~~--~~~~~~~~~~~i~~gGGtps~l~-~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l------ 115 (391)
....|.+.+++-++.. -..++....-.-+++-+....-+ .+.+.++++++++. .+.+|.|...+
T Consensus 122 ~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~lEiNt~~~~~~~~~ 194 (246)
T PRK07329 122 LLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDN-------DLAFELNTKSMYLYGNE 194 (246)
T ss_pred HHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHc-------CCeEEEECcccccCCCC
Confidence 3567888887766632 12222111101122211111100 34556777777764 23444443222
Q ss_pred --CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-ccc
Q psy2383 116 --EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNN 168 (391)
Q Consensus 116 --~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~ 168 (391)
..+.++..++.|+..|.+|-.+=.++.+.. .+.++++.++++ ++.
T Consensus 195 ~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~--------~~~~a~~~l~~~g~~~ 242 (246)
T PRK07329 195 GLYRYAIELYKQLGGKLFSIGSDAHKLEHYRY--------NFDDAQKLLKEHGIKE 242 (246)
T ss_pred cchHHHHHHHHHcCCeEEEecCCCCCHHHHHH--------HHHHHHHHHHHcCCce
Confidence 255789999999988999988865554321 355677777777 653
No 352
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=64.79 E-value=30 Score=31.29 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=41.4
Q ss_pred CCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 66 NRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 66 ~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
..+++.|.++. + -++..+++.+ ++.++.+...-...+...++.|++.|+.++.+..|-
T Consensus 13 ~~g~dgi~v~~-------~----g~~~~~k~~~---~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 13 ELGVDGILVSN-------P----GLLELLKELG---PDLKIIADYSLNVFNSESARFLKELGASRITLSPEL 70 (233)
T ss_pred hCCCCEEEEcC-------H----HHHHHHHHhC---CCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccC
Confidence 44688888753 1 3345566653 345666666566679999999999999999998664
No 353
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.36 E-value=45 Score=30.05 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=55.2
Q ss_pred EEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHH-hhcccceEeEec------CC
Q psy2383 105 SITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK-QYFNNFNLDLIY------AL 177 (391)
Q Consensus 105 eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~-~~~~~v~~dlI~------Gl 177 (391)
.+.+- ..--+.+.++.+.++|++++.+|-..+.+ .+.+.+.++... +.+. +++|+-- |.
T Consensus 74 pi~~g--gGI~~~ed~~~~~~~Ga~~vvlgs~~l~d-----------~~~~~~~~~~~g~~~i~-~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 74 PVQVG--GGIRSLEDVEKLLDLGVDRVIIGTAAVEN-----------PDLVKELLKEYGPERIV-VSLDARGGEVAVKGW 139 (230)
T ss_pred CEEEe--CCcCCHHHHHHHHHcCCCEEEEChHHhhC-----------HHHHHHHHHHhCCCcEE-EEEEEECCEEEEcCC
Confidence 44443 33347889999999999999988655432 344555555554 2232 5566542 22
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 178 PNQTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
-.++..+..+.++.+.+.+++.+.+...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~ 169 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISR 169 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecC
Confidence 112234455667778899999998877653
No 354
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=64.29 E-value=1.2e+02 Score=29.96 Aligned_cols=62 Identities=6% Similarity=-0.119 Sum_probs=35.7
Q ss_pred EEEEeCCCCCCCCHHHHHHH--------HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCC
Q psy2383 71 TIFIGGGTPSLISDTGLDYL--------LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFN 139 (391)
Q Consensus 71 ~i~~gGGtps~l~~~~l~~l--------l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~ 139 (391)
.+....+++++++++.++++ ++.+++. +..+.+ +...-+...++.+++.|.+.+..-.++.|
T Consensus 233 ~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~-----g~~~il--h~cG~~~~~l~~l~~~g~~~v~~~~~~~d 302 (378)
T cd03308 233 FTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAAR-----GQRIFL--FFEGDWERYLEYLQELPKGKTVGLFEYGD 302 (378)
T ss_pred EEEecccccCccCHHHHHHHHHHHHHHHHHHHHhc-----CCCEEE--EcCCCcHHHHHHHHhcCCCcEEEcCCCCC
Confidence 45555668899999987655 3333321 111222 23333556799999999985444344433
No 355
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=63.97 E-value=31 Score=32.57 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=44.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvq 136 (391)
+++.|.+.- ++++.+++....+++.. + .+.+|+.. .++.+.++.+++.|++.||+|-=
T Consensus 209 gaDiI~LDn-----~~~e~l~~av~~~~~~~---~--~~~leaSG-GI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 209 QPDVLQLDK-----FSPQQATEIAQIAPSLA---P--HCTLSLAG-GINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred CCCEEEECC-----CCHHHHHHHHHHhhccC---C--CeEEEEEC-CCCHHHHHHHHhcCCCEEEECcc
Confidence 577888742 57888888888775431 2 45677665 59999999999999999999964
No 356
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=63.77 E-value=98 Score=26.77 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q psy2383 87 LDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF 166 (391)
Q Consensus 87 l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~ 166 (391)
+.+.+..+++.++. ..+|.+|+. +.+.++...++|++.|-+- ..+++++.++++.+++..
T Consensus 66 i~~av~~~~~~~~~--~~~I~VEv~----~~ee~~ea~~~g~d~I~lD--------------~~~~~~~~~~v~~l~~~~ 125 (169)
T PF01729_consen 66 IEEAVKAARQAAPE--KKKIEVEVE----NLEEAEEALEAGADIIMLD--------------NMSPEDLKEAVEELRELN 125 (169)
T ss_dssp HHHHHHHHHHHSTT--TSEEEEEES----SHHHHHHHHHTT-SEEEEE--------------S-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC--CceEEEEcC----CHHHHHHHHHhCCCEEEec--------------CcCHHHHHHHHHHHhhcC
Confidence 46667777777653 234777754 3566777778999988873 236788899999887764
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+++.+-.==|+.-++.+++. +.++|.|++-.++
T Consensus 126 ~~v~ie~SGGI~~~ni~~ya-------~~gvD~isvg~~~ 158 (169)
T PF01729_consen 126 PRVKIEASGGITLENIAEYA-------KTGVDVISVGSLT 158 (169)
T ss_dssp TTSEEEEESSSSTTTHHHHH-------HTT-SEEEECHHH
T ss_pred CcEEEEEECCCCHHHHHHHH-------hcCCCEEEcChhh
Confidence 45666665667666655554 6689999886654
No 357
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.72 E-value=67 Score=33.77 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+-.+.+++... +++.|++.+ |-..+.|..+.+++..+++.+++ .|.+=+ +.+.-....++.+ +
T Consensus 154 ~~~~~~a~~l~~~-------Gad~I~i~D-t~G~~~P~~~~~lv~~lk~~~~~----pi~~H~Hnt~Gla~An~laAv-~ 220 (592)
T PRK09282 154 EKYVELAKELEEM-------GCDSICIKD-MAGLLTPYAAYELVKALKEEVDL----PVQLHSHCTSGLAPMTYLKAV-E 220 (592)
T ss_pred HHHHHHHHHHHHc-------CCCEEEECC-cCCCcCHHHHHHHHHHHHHhCCC----eEEEEEcCCCCcHHHHHHHHH-H
Confidence 4555555666432 478899977 77888999999999999998752 344444 3333345555555 7
Q ss_pred CCCCEEEEecCCCCH
Q psy2383 126 IGINRLSIGIQSFNN 140 (391)
Q Consensus 126 ~Gv~risiGvqS~~~ 140 (391)
+|++.|...+-.+.+
T Consensus 221 aGad~vD~ai~g~g~ 235 (592)
T PRK09282 221 AGVDIIDTAISPLAF 235 (592)
T ss_pred hCCCEEEeeccccCC
Confidence 899999988876443
No 358
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=63.63 E-value=18 Score=28.20 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=31.8
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
....+|+....+.++++.+..++...++.|..+|+|.-+
T Consensus 60 ~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 60 PNSEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp ---TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEES
T ss_pred CCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecc
Confidence 344689999999999988888899999999999999754
No 359
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=63.49 E-value=16 Score=25.77 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=22.8
Q ss_pred HhCCCHHHHHHHHHHHHHCCCeEEcCCeEEe
Q psy2383 343 RTGINIKIIESKLKNAEKLGLLKRNNKNIKP 373 (391)
Q Consensus 343 ~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~l 373 (391)
.++.+.+++...|+.++++|.++.+++.++|
T Consensus 30 ~~~~s~~eL~~fL~~lv~e~~L~~~~G~YkL 60 (60)
T PF08672_consen 30 GYDISLEELQEFLDRLVEEGKLECSGGSYKL 60 (60)
T ss_dssp -TT--HHHHHHHHHHHHHTTSEE--TTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEecCCEEeC
Confidence 4455667788999999999999999999886
No 360
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=63.33 E-value=1.3e+02 Score=28.18 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=52.7
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
+.++.+.+.|++.|.++--++.-. ..|.++-.+.++.+.+... -.+-+|.|..+.+.++..+-.+.+.++|+
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~-------~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFY-------SLTDEERKELLEIVVEAAA-GRVPVIAGVGANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGG-------GS-HHHHHHHHHHHHHHHT-TSSEEEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCEEEECCCCcccc-------cCCHHHHHHHHHHHHHHcc-CceEEEecCcchhHHHHHHHHHHHhhcCc
Confidence 455556678999988864332211 1345566666666666521 23557889888899999999999999999
Q ss_pred CeEEEec
Q psy2383 198 PHLSLYS 204 (391)
Q Consensus 198 ~~is~y~ 204 (391)
|.+.+-+
T Consensus 98 d~v~v~~ 104 (289)
T PF00701_consen 98 DAVLVIP 104 (289)
T ss_dssp SEEEEEE
T ss_pred eEEEEec
Confidence 9886653
No 361
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.30 E-value=24 Score=33.22 Aligned_cols=62 Identities=11% Similarity=0.305 Sum_probs=46.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
+++.|.+-. ++++.+++....+++.. .. ..+.+|+.. .++.+.++.+++.|++.||+|-=+.
T Consensus 202 gaDiI~LDn-----~~~e~l~~~v~~l~~~~-~~--~~~~leaSG-GI~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 202 GADIIMLDN-----MTPEEIREVIEALKREG-LR--ERVKIEVSG-GITPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CcCEEEECC-----CCHHHHHHHHHHHHhcC-cC--CCEEEEEEC-CCCHHHHHHHHHcCCCEEEeChhhc
Confidence 467776633 36888999998887642 11 246778765 4899999999999999999996544
No 362
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.24 E-value=56 Score=30.49 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=42.9
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|++.+ |-..+.|+++.+++..+++.++ +++.+.+=+ +...-....+..+ ++|++.|.-.+--
T Consensus 151 g~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~--~~~~i~~H~Hn~~Gla~AN~laA~-~aGa~~vd~s~~G 218 (266)
T cd07944 151 KPDVFYIVD-SFGSMYPEDIKRIISLLRSNLD--KDIKLGFHAHNNLQLALANTLEAI-ELGVEIIDATVYG 218 (266)
T ss_pred CCCEEEEec-CCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeCCCccHHHHHHHHHH-HcCCCEEEEeccc
Confidence 467888876 6677788888899888887754 223444433 2332344555555 5788888776654
No 363
>TIGR02277 PaaX_trns_reg phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription.
Probab=62.95 E-value=16 Score=34.41 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=37.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCeEEcC----CeEEeCcchHHHHHHHHHH
Q psy2383 341 FERTGINIKIIESKLKNAEKLGLLKRNN----KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 341 ~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~~G~~~~~~i~~~ 387 (391)
.+.+|++-..+...|..|+++|+++... ..++||++|+-........
T Consensus 27 ~~~~gi~~~~vr~al~RL~~~G~l~~~~~grr~~Y~LT~~g~~~l~~~~~r 77 (280)
T TIGR02277 27 LAGLGINERLVRTAVSRLVAQGWLQSERKGRRSFYSLTDKGRRRFAAAAQR 77 (280)
T ss_pred HHhcCCCcchHHHHHHHHHHCCCEEeeecCCCCEEEECHHHHHHHHHHhhh
Confidence 3456766566889999999999998764 5899999999888776543
No 364
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=62.89 E-value=1.3e+02 Score=29.09 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeCCCC----CCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHH
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEANPST----FEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAI 159 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~----l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i 159 (391)
-++..++.+++.. ..-.+-+++..+..+ .-+|..+.+++++ ++-|.+.+-+-+..-.. -..+.+.+.+.+
T Consensus 123 g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~---~~~~~~~~~eiv 198 (344)
T PRK05286 123 GADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLR---DLQYGEALDELL 198 (344)
T ss_pred hHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcc---cccCHHHHHHHH
Confidence 4566666666543 221234555444322 2356677777766 88888887554433111 134666677777
Q ss_pred HHHHhh-cc---cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecc
Q psy2383 160 EIAKQY-FN---NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSL 205 (391)
Q Consensus 160 ~~~~~~-~~---~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l 205 (391)
+.+++. -. .+-+-+=+. |+.|.+++.+..+.+.+.|+|.|++..=
T Consensus 199 ~aVr~~~~~~~~~~PV~vKls-p~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 199 AALKEAQAELHGYVPLLVKIA-PDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred HHHHHHHhccccCCceEEEeC-CCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 777765 21 011212223 5678888999999999999999998873
No 365
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=62.74 E-value=44 Score=27.82 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceec
Q psy2383 190 NYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYE 247 (391)
Q Consensus 190 ~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye 247 (391)
+.+.+++++.|-+||+...-. .+.+++...++...+.+.|.+.||..+.
T Consensus 65 ~~a~kv~~~~ivlyPyAHLSs---------~La~P~~A~~iL~~le~~L~~~g~eV~r 113 (138)
T PF08915_consen 65 WVAKKVKAKRIVLYPYAHLSS---------SLASPDVAVEILKKLEERLKSRGFEVYR 113 (138)
T ss_dssp HHHHHTT-SEEEEEE-GGGSS---------SB--HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHhcCCCEEEEeCcccccC---------CcCChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 445578999999999886532 3566788899999999999999998763
No 366
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=62.59 E-value=25 Score=32.91 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 322 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 322 ~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
...++..|+....+...++.+.|+++...+++-|..|+++|++.+..+...+.
T Consensus 19 ~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~r~~GGa~~~ 71 (269)
T PRK09802 19 REQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALIC 71 (269)
T ss_pred HHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeEEEeCCEEec
Confidence 44556667777779999999999999888999999999999998876666543
No 367
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.58 E-value=20 Score=33.63 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=42.4
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|.+- + ++++.++++++.++... + .+.+|+.. .++++.++.+.+.|++.||+|-=+
T Consensus 202 GaDiI~LD--n---~~~e~l~~~v~~~~~~~---~--~~~ieAsG-gIt~~ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 202 GADIVMCD--N---MSVEEIKEVVAYRNANY---P--HVLLEASG-NITLENINAYAKSGVDAISSGSLI 260 (273)
T ss_pred CCCEEEEC--C---CCHHHHHHHHHHhhccC---C--CeEEEEEC-CCCHHHHHHHHHcCCCEEEeChhh
Confidence 46767662 2 37788888887664332 2 35667665 469999999999999999999543
No 368
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=62.51 E-value=26 Score=32.43 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 322 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 322 ~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
.+.++..|+....+...++.+.|+++...+++-|..|++.|++.+.-|...+.
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~r~~GGa~~~ 59 (252)
T PRK10906 7 HDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALP 59 (252)
T ss_pred HHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCEEec
Confidence 34455556666679999999999999888999999999999998875555443
No 369
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=62.46 E-value=69 Score=26.58 Aligned_cols=71 Identities=6% Similarity=-0.134 Sum_probs=42.1
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC-CCCCCHHHHHHHHHHHHh
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA-LPNQTLSELMLDLNYAIQ 194 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G-lPgqt~e~~~~~l~~~~~ 194 (391)
++.++..++.+++-|.++.=. +++.+.+.+.++.+++. ...+- +|+| -|.-..+++.+..+.+.+
T Consensus 42 e~~v~aa~~~~adiVglS~l~-----------~~~~~~~~~~~~~l~~~gl~~~~--vivGG~~vi~~~d~~~~~~~l~~ 108 (134)
T TIGR01501 42 EEFIKAAIETKADAILVSSLY-----------GHGEIDCKGLRQKCDEAGLEGIL--LYVGGNLVVGKQDFPDVEKRFKE 108 (134)
T ss_pred HHHHHHHHHcCCCEEEEeccc-----------ccCHHHHHHHHHHHHHCCCCCCE--EEecCCcCcChhhhHHHHHHHHH
Confidence 445555555555555443211 45667788888888888 65332 4555 233345566555667778
Q ss_pred cCCCeE
Q psy2383 195 YSPPHL 200 (391)
Q Consensus 195 l~~~~i 200 (391)
+|++.+
T Consensus 109 ~Gv~~v 114 (134)
T TIGR01501 109 MGFDRV 114 (134)
T ss_pred cCCCEE
Confidence 888765
No 370
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=62.29 E-value=18 Score=28.18 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHCCCeEEcCC-----eEEeCcchHHHHHH
Q psy2383 349 KIIESKLKNAEKLGLLKRNNK-----NIKPTSFGRYFLND 383 (391)
Q Consensus 349 ~~~~~~l~~l~~~gl~~~~~~-----~~~lT~~G~~~~~~ 383 (391)
..+...+.+|+..|++..+.+ .+.+|++|+-+++.
T Consensus 57 ~~~~~li~~Li~~g~L~~~~~~~~~~~l~~~~~~~~~l~g 96 (106)
T PF09382_consen 57 DDWERLIRQLILEGYLSEDNGGFAYPYLKLTPKGKELLNG 96 (106)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCCCTEEEEE-GGGHHHHCT
T ss_pred HHHHHHHHHHHHcCCceecCCcccccEEEECHHHHHHHCC
Confidence 457889999999999988877 89999999988753
No 371
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=62.22 E-value=95 Score=29.61 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=69.8
Q ss_pred CCeeEEEEeCC--CCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGG--TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGG--tps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.|++.|. ....|+.++-.++++...+.. ...+.+-+-+...+. +-+..+..+++|++.+.+-.-.+-
T Consensus 41 ~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~--~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~--- 115 (309)
T cd00952 41 AGVDGILTMGTFGECATLTWEEKQAFVATVVETV--AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL--- 115 (309)
T ss_pred cCCCEEEECcccccchhCCHHHHHHHHHHHHHHh--CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC---
Confidence 46899999884 466678888899998887763 233445544433222 345666677789999888654421
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH-HHHHHHHHh
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL-MLDLNYAIQ 194 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~-~~~l~~~~~ 194 (391)
+ .+.+++.+-.+.+.++.+.+-+ +||..|..|--++ .+++..+.+
T Consensus 116 -----~-~~~~~l~~yf~~va~a~~~lPv-~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 116 -----P-LDVDTAVQFYRDVAEAVPEMAI-AIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred -----C-CCHHHHHHHHHHHHHhCCCCcE-EEEcCchhcCCCCCHHHHHHHhc
Confidence 1 2446666666665554211334 6788887643222 334455543
No 372
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.02 E-value=1.4e+02 Score=28.03 Aligned_cols=139 Identities=11% Similarity=0.114 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEE-----e----cCCCCHHHHHHhCC---
Q psy2383 82 ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINRLSI-----G----IQSFNNKYLNILGR--- 148 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risi-----G----vqS~~~~~l~~l~R--- 148 (391)
-+++.+.++++.+++..+ ..+.+-.+|+.- ..+.++.+.++|++-|.+ | .++..+..-...+-
T Consensus 137 ~~~~~~~eiv~~vr~~~~----~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg 212 (296)
T cd04740 137 TDPEAVAEIVKAVKKATD----VPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG 212 (296)
T ss_pred CCHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC
Confidence 356778889999988643 456666666532 235567788899988865 1 11111110000000
Q ss_pred CCCHHHHHHHHHHHHhhcccceEeEecCCCC-CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHH
Q psy2383 149 THDSKQAKYAIEIAKQYFNNFNLDLIYALPN-QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDEN 227 (391)
Q Consensus 149 ~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg-qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~ 227 (391)
........+.+..+++.. ++.+|. -=| .|.++..+ +++.|.+-|.++.-.+. ++...
T Consensus 213 ~~~~~~~~~~i~~i~~~~---~ipii~-~GGI~~~~da~~----~l~~GAd~V~igra~l~--------------~p~~~ 270 (296)
T cd04740 213 PAIKPIALRMVYQVYKAV---EIPIIG-VGGIASGEDALE----FLMAGASAVQVGTANFV--------------DPEAF 270 (296)
T ss_pred cccchHHHHHHHHHHHhc---CCCEEE-ECCCCCHHHHHH----HHHcCCCEEEEchhhhc--------------ChHHH
Confidence 001112344555555532 233333 223 35555544 44678999988763322 22344
Q ss_pred HHHHHHHHHHHHHCCCcee
Q psy2383 228 AVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 228 ~~~~~~~~~~L~~~Gy~~y 246 (391)
.++.+...++|.++||...
T Consensus 271 ~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 271 KEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HHHHHHHHHHHHHcCCCCH
Confidence 5566667788999998754
No 373
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.97 E-value=1.3e+02 Score=27.76 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=51.5
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC-CCCHHHHHHHHHHHHhh-cccceEeEe-------cCCCC-----CCH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGR-THDSKQAKYAIEIAKQY-FNNFNLDLI-------YALPN-----QTL 182 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R-~~~~~~~~~~i~~~~~~-~~~v~~dlI-------~GlPg-----qt~ 182 (391)
++.++.++++|++.|.+.+...+... .. ..+.+++.+..+.++++ +. +..-.. ++-|. +..
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~gl~-i~~~~~~~~~~~~~~~~~~~~r~~~~ 98 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERL----ARLDWSREQRLALVNALVETGFR-VNSMCLSAHRRFPLGSEDDAVRAQAL 98 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccch----hccCCCHHHHHHHHHHHHHcCCc-eeEEecccccccCCCCCCHHHHHHHH
Confidence 68999999999999999877644322 11 12556666666667776 54 322111 11111 123
Q ss_pred HHHHHHHHHHHhcCCCeEEEe
Q psy2383 183 SELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y 203 (391)
+.+++.++.+.++++++|.+.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~ 119 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLA 119 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 456778889999999998753
No 374
>PRK15447 putative protease; Provisional
Probab=61.47 E-value=44 Score=31.79 Aligned_cols=77 Identities=9% Similarity=-0.041 Sum_probs=54.0
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC--CHHHHHHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ--TLSELMLDLNYA 192 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq--t~e~~~~~l~~~ 192 (391)
-+.....+++.|+++|-+|.+.++.+. ..+.+++.++++.++++ .+ +-+ -+|.= ..+++ +.+..+
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R~------~f~~~~l~e~v~~~~~~gkk-vyv----a~p~i~~~~~e~-~~l~~~ 84 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKRR------ELKVGDWLELAERLAAAGKE-VVL----STLALVEAPSEL-KELRRL 84 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCcc------CCCHHHHHHHHHHHHHcCCE-EEE----EecccccCHHHH-HHHHHH
Confidence 356777888889999999998888764 57999999999999998 44 333 33442 23344 345556
Q ss_pred HhcCCCeEEEec
Q psy2383 193 IQYSPPHLSLYS 204 (391)
Q Consensus 193 ~~l~~~~is~y~ 204 (391)
++.+++.|-+..
T Consensus 85 l~~~~~~v~v~d 96 (301)
T PRK15447 85 VENGEFLVEAND 96 (301)
T ss_pred HhcCCCEEEEeC
Confidence 666777665544
No 375
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=61.46 E-value=1.4e+02 Score=27.73 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=31.9
Q ss_pred CeeEEEEeCC-C-CC---CCCHHHHHHHH---HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGGG-T-PS---LISDTGLDYLL---KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gGG-t-ps---~l~~~~l~~ll---~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+-|-+||- | |. .-..+.++++. +.+++.+ ++.+++ ++.+.+.++..-++|+.-|
T Consensus 37 GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSI----DT~~~~v~e~al~~G~~iI 100 (257)
T cd00739 37 GADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----DVLISV----DTFRAEVARAALEAGADII 100 (257)
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEE----eCCCHHHHHHHHHhCCCEE
Confidence 4677888762 2 22 22344566654 5454433 345666 4667777777667786443
No 376
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=61.43 E-value=38 Score=31.85 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecC
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvq 136 (391)
.+++.|.+-. ++++++.+..+.+++. . ..+.+|+.. .++.+.+..+++.|++.||+|-=
T Consensus 207 ~GaDiI~lDn-----~~~e~l~~~v~~l~~~---~--~~~~leasG-GI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 207 ASPDILQLDK-----FTPQQLHHLHERLKFF---D--HIPTLAAAG-GINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred cCcCEEEECC-----CCHHHHHHHHHHHhcc---C--CCEEEEEEC-CCCHHHHHHHHhcCCCEEEeCcc
Confidence 3577787753 5788889988888643 1 245677654 59999999999999999999864
No 377
>PRK12999 pyruvate carboxylase; Reviewed
Probab=61.32 E-value=56 Score=37.27 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+-.+.+++... +++.|++-+ |-.++.|....+++..+++.++ ..|.+=++ .+.-....++.+
T Consensus 690 ~~~~~~~a~~l~~~-------Ga~~i~ikD-t~G~l~P~~~~~lv~~lk~~~~----ipi~~H~Hnt~Gla~an~laA~- 756 (1146)
T PRK12999 690 LDYYVDLAKELEKA-------GAHILAIKD-MAGLLKPAAAYELVSALKEEVD----LPIHLHTHDTSGNGLATYLAAA- 756 (1146)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEECC-ccCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCCCchHHHHHHHHH-
Confidence 34555667777643 468899977 7788999999999999999864 34444443 333345555555
Q ss_pred HCCCCEEEEecCCCCH
Q psy2383 125 IIGINRLSIGIQSFNN 140 (391)
Q Consensus 125 ~~Gv~risiGvqS~~~ 140 (391)
++|++.|...+-++..
T Consensus 757 ~aGad~vD~av~glg~ 772 (1146)
T PRK12999 757 EAGVDIVDVAVASMSG 772 (1146)
T ss_pred HhCCCEEEecchhhcC
Confidence 6899999998876543
No 378
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=61.10 E-value=24 Score=26.32 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.4
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
|++..-.+...+...|+.+.+.+.+.|+.|+..|-++.-
T Consensus 11 l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 11 LALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 344556889999999999988899999999999999854
No 379
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=61.04 E-value=49 Score=35.21 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeeCC-CCCCHHHHHHhHHCCCCEEEEecCCC-----CHHHHHHh--CCCCCHHHHHHH
Q psy2383 87 LDYLLKNIKKLLLFKKNISITLEANP-STFEIEKFHSYSIIGINRLSIGIQSF-----NNKYLNIL--GRTHDSKQAKYA 158 (391)
Q Consensus 87 l~~ll~~i~~~~~~~~~~eit~e~~p-~~l~~e~l~~l~~~Gv~risiGvqS~-----~~~~l~~l--~R~~~~~~~~~~ 158 (391)
+.+..+.|++..+. +..+-+-| +..+...++.++++|. ++.+..+.+ ++..+.++ ....+.+.+.+.
T Consensus 230 L~~s~~~Ie~~tG~----~p~~FayPyG~~n~~~~~iakeaGY-~~afT~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~ 304 (671)
T PRK14582 230 AVKMTEYIRTKAGK----NPRVWVWPYGEANGIALEELKKLGY-DMAFTLESGLANASQLDSIPRVLIANNPSLKEFAQQ 304 (671)
T ss_pred HHHHHHHHHHHhCC----CCcEEecCCCCCCHHHHHHHHHCCC-eEEEEeCCCCCCCCCcCccceEEecCCCCHHHHHHH
Confidence 33444455555443 22333445 3568999999999998 455554333 22222222 234577777777
Q ss_pred HHHHHhh--cc--cceEeEec-CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCC---CCCCCHHHHHHH
Q psy2383 159 IEIAKQY--FN--NFNLDLIY-ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVM 230 (391)
Q Consensus 159 i~~~~~~--~~--~v~~dlI~-GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~---~~~p~~~~~~~~ 230 (391)
+....+- +. .+.+|.|+ .=|.|+.+.+..-|+.+.+.|+.+|-+-.+.-..|+.++...- ..+|- ....
T Consensus 305 v~~~~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~---r~d~ 381 (671)
T PRK14582 305 IITVQEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM---RADL 381 (671)
T ss_pred HhcccCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc---ccCC
Confidence 7544332 22 24556677 4678999999999999999999999887776555666554321 12333 3444
Q ss_pred HHHHHHHH-HHCCCceec
Q psy2383 231 QDKITSLL-KNNYYKNYE 247 (391)
Q Consensus 231 ~~~~~~~L-~~~Gy~~ye 247 (391)
|....-.| .++|.+.|.
T Consensus 382 f~~~aw~l~~r~~v~v~A 399 (671)
T PRK14582 382 FNRVAWQLRTRAGVNVYA 399 (671)
T ss_pred cCHHHHHHHHhhCCEEEE
Confidence 55433333 356876663
No 380
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=60.87 E-value=77 Score=24.85 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 160 EIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 160 ~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
+.+++. ..++.+-+|=|- -++.+.++.+.+.++.+|.+.||...+|.=..+. +|.++ .+--+..|
T Consensus 23 ~~l~~~~~~~v~~~~lE~~-----P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~D----ipge~-----~~SW~~~l 88 (103)
T cd03413 23 YVLREEDPANVFVGTVEGY-----PGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHND----MAGDE-----PDSWKSIL 88 (103)
T ss_pred HHHHhcCCCcEEEEEEcCC-----CCHHHHHHHHHHcCCCEEEEEehhheecccchhc----CCCCC-----chhHHHHH
Confidence 334443 233544454343 3477788888999999999999999998755543 34432 11234678
Q ss_pred HHCCCce
Q psy2383 239 KNNYYKN 245 (391)
Q Consensus 239 ~~~Gy~~ 245 (391)
.++||..
T Consensus 89 ~~~g~~v 95 (103)
T cd03413 89 EAAGIKV 95 (103)
T ss_pred HHCCCee
Confidence 8889875
No 381
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=60.82 E-value=1.5e+02 Score=27.83 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=59.1
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
..++.+.+.|++.|.+.=-|+.- -..|.++-.+.++.+.+... -.+.+|.|.-..+.++..+-.+.+.+.|+
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~-------~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGES-------PTLSHEEHKKVIEFVVDLVN-GRVPVIAGTGSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHHHHcCCCEEEECccCccc-------ccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCCccHHHHHHHHHHHHHcCC
Confidence 34555566788887763222210 12355666666666666521 13557788877778888888888888888
Q ss_pred CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 198 PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 198 ~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
|.+.+.+ |.+- .|++++..+.|..+.+.
T Consensus 95 d~v~v~p-------P~y~-----~~~~~~i~~~~~~i~~~ 122 (285)
T TIGR00674 95 DGFLVVT-------PYYN-----KPTQEGLYQHFKAIAEE 122 (285)
T ss_pred CEEEEcC-------CcCC-----CCCHHHHHHHHHHHHhc
Confidence 8876654 2111 24555666666555443
No 382
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=60.37 E-value=1.4e+02 Score=27.52 Aligned_cols=86 Identities=8% Similarity=0.152 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
|+..|.-..+.+.++|++-|-+|= -..-..+|.+ .+.+++...++.+.+. ..-+.+|+=+|. |+++++.
T Consensus 17 ~~ayD~~sA~i~e~aG~dai~v~~----s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~ 91 (240)
T cd06556 17 LTAYDYSMAKQFADAGLNVMLVGD----SQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAA 91 (240)
T ss_pred ecCCCHHHHHHHHHcCCCEEEECh----HHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHH
Confidence 455677788889999999988862 1122233433 4788888888888876 223899999997 6798999
Q ss_pred HHHHHHHHhcCCCeEEE
Q psy2383 186 MLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~ 202 (391)
.++++.+.+.|++-|.+
T Consensus 92 ~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 92 FELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 99999999999987755
No 383
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=59.99 E-value=1.5e+02 Score=27.83 Aligned_cols=140 Identities=9% Similarity=0.008 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEEe--cC--CCCHHH----HHHhCCCCCH
Q psy2383 82 ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINRLSIG--IQ--SFNNKY----LNILGRTHDS 152 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risiG--vq--S~~~~~----l~~l~R~~~~ 152 (391)
-+++.+.++++.+++..+ ..+++-.+|+.- ..+..+.+.++|++-|.+. +- ..+.+. +..-..+.+.
T Consensus 140 ~~~~~~~eiv~~vr~~~~----~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg 215 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTD----VPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG 215 (300)
T ss_pred cCHHHHHHHHHHHHHhcC----CCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc
Confidence 467788999999988643 456776666432 2466777889999999872 11 111000 0000001121
Q ss_pred HH----HHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHH
Q psy2383 153 KQ----AKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENA 228 (391)
Q Consensus 153 ~~----~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~ 228 (391)
.. ..+.+..+++. +++.+|..===.|.++..+-+ +.|.+-|.+..-.+.. | ....
T Consensus 216 ~~~~~~~l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l----~~GAd~V~igr~~l~~------------p--~~~~ 274 (300)
T TIGR01037 216 PAIKPIALRMVYDVYKM---VDIPIIGVGGITSFEDALEFL----MAGASAVQVGTAVYYR------------G--FAFK 274 (300)
T ss_pred hhhhHHHHHHHHHHHhc---CCCCEEEECCCCCHHHHHHHH----HcCCCceeecHHHhcC------------c--hHHH
Confidence 11 23444455543 234444221124666655444 5788888777533221 2 2345
Q ss_pred HHHHHHHHHHHHCCCcee
Q psy2383 229 VMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 229 ~~~~~~~~~L~~~Gy~~y 246 (391)
++.....++|.++||...
T Consensus 275 ~i~~~l~~~~~~~g~~~~ 292 (300)
T TIGR01037 275 KIIEGLIAFLKAEGFTSI 292 (300)
T ss_pred HHHHHHHHHHHHcCCCCH
Confidence 566677888999999754
No 384
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=59.93 E-value=76 Score=29.92 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHhccCcccC-CCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCC
Q psy2383 54 LIDVELSLPIILN-RKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGI 128 (391)
Q Consensus 54 ~~Ei~~~~~~~~~-~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv 128 (391)
.+.++...+.+-. .+++.|++.| |....|+.+.-.++++.+.+. ....+.+-+-+...+. +-+..+..+++|+
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~--~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE--AKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH--hCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Q ss_pred CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCC
Q psy2383 129 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT 181 (391)
Q Consensus 129 ~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 181 (391)
+.+.+-.=.+.+- +.+++.+-.+.+.++.+ +-+ ++|..|..|
T Consensus 101 d~v~v~~P~y~~~---------~~~~l~~~f~~va~a~~-lPv-~iYn~P~~t 142 (293)
T PRK04147 101 DAISAVTPFYYPF---------SFEEICDYYREIIDSAD-NPM-IVYNIPALT 142 (293)
T ss_pred CEEEEeCCcCCCC---------CHHHHHHHHHHHHHhCC-CCE-EEEeCchhh
No 385
>PF10711 DUF2513: Hypothetical protein (DUF2513); InterPro: IPR019650 The function of this family is not known.
Probab=59.74 E-value=18 Score=28.36 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEEcCCeE----------EeCcchHHHHHHHH
Q psy2383 346 INIKIIESKLKNAEKLGLLKRNNKNI----------KPTSFGRYFLNDLQ 385 (391)
Q Consensus 346 ~~~~~~~~~l~~l~~~gl~~~~~~~~----------~lT~~G~~~~~~i~ 385 (391)
.+.+.+.-.+..|.++||+....... .||..|.-|+++|-
T Consensus 32 y~~~~i~YHl~lL~eagli~~~~~~~~~~~~~~~i~~LT~~GHdFLd~IR 81 (102)
T PF10711_consen 32 YSKEEIAYHLKLLDEAGLIEGSVSGTMNGPYSFIIKRLTWSGHDFLDAIR 81 (102)
T ss_pred CCHHHHHHHHHHHHHCCCeeeccccccCCccchhhcccChhHHHHHHHhc
Confidence 34455667799999999998765333 89999999999873
No 386
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=59.61 E-value=1.6e+02 Score=27.82 Aligned_cols=134 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCE
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINR 130 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~r 130 (391)
.+.++...+.+-+.+++.++++| |....|+.++-.++++.+.+. ......+-+-+...+- +-+..+..+++|++.
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~--~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST--AKGKVPVYTGVGGNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH--hCCCCcEEEecCccHHHHHHHHHHHHHhCCCE
Q ss_pred EEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 131 isiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
+.+-.-.+.+ .+.+++.+-.+.+.++.+ +.+ ++|..+|.+.. .+++..+.+-.+.-+-+
T Consensus 103 v~~~pP~y~~---------~s~~~i~~~f~~v~~a~~-~pv-ilYn~~g~~l~--~~~~~~La~~~~nvvgi 161 (296)
T TIGR03249 103 YLLLPPYLIN---------GEQEGLYAHVEAVCESTD-LGV-IVYQRDNAVLN--ADTLERLADRCPNLVGF 161 (296)
T ss_pred EEECCCCCCC---------CCHHHHHHHHHHHHhccC-CCE-EEEeCCCCCCC--HHHHHHHHhhCCCEEEE
No 387
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=59.01 E-value=19 Score=26.56 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 350 IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 350 ~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+....++.|-+.||+..-+++ +||+.|.-.....-
T Consensus 35 ~~i~a~~RLheKGLI~~pdGg-yLT~~G~~~aEhaq 69 (77)
T TIGR02647 35 AAVAAAARLHEKGLTTQPDGG-YLTSLGLEAAEHAQ 69 (77)
T ss_pred HHHHHHHHHHHcCCccCCCCC-EecHHHHHHHHHHH
Confidence 456889999999999987777 99999998777653
No 388
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=58.90 E-value=66 Score=29.45 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH-HhCCCCCHHHHHHHHH
Q psy2383 82 ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN-ILGRTHDSKQAKYAIE 160 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~-~l~R~~~~~~~~~~i~ 160 (391)
+..+++..|.+.++ .++.+|+.| +++.++...+.--+++.+-.+.=.+-+=+ =++=....+.+...++
T Consensus 52 I~d~Dv~~L~~~~~--------~~lNlE~a~---~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~ 120 (239)
T PRK05265 52 IRDRDVRLLRETLK--------TELNLEMAA---TEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIA 120 (239)
T ss_pred CCHHHHHHHHHhcC--------CCEEeccCC---CHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHH
Q ss_pred HHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 161 IAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 161 ~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+++. +. |++ || +--.+.++.+.++|.+.|.+|
T Consensus 121 ~L~~~gIr-VSL-Fi--------dP~~~qi~~A~~~GAd~VELh 154 (239)
T PRK05265 121 RLKDAGIR-VSL-FI--------DPDPEQIEAAAEVGADRIELH 154 (239)
T ss_pred HHHHCCCE-EEE-Ee--------CCCHHHHHHHHHhCcCEEEEe
No 389
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=58.90 E-value=51 Score=25.89 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcE-EEEeeCCCCCCHHHHHHhHHCCCCEEEEe
Q psy2383 71 TIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNIS-ITLEANPSTFEIEKFHSYSIIGINRLSIG 134 (391)
Q Consensus 71 ~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~e-it~e~~p~~l~~e~l~~l~~~Gv~risiG 134 (391)
.+++|-|++.-- .+.+..+.+.+++..+ ..++ -++|+.|. + ++.++.+.+.|+++|.+=
T Consensus 3 illvgHGSr~~~-~~~~~~l~~~l~~~~~--~~v~~~~lE~~P~-i-~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 3 VVFMGHGTDHPS-NAVYAALEYVLREEDP--ANVFVGTVEGYPG-L-DDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred EEEEECCCCchh-hhHHHHHHHHHHhcCC--CcEEEEEEcCCCC-H-HHHHHHHHHcCCCEEEEE
Confidence 367888887643 4567777777766532 2333 45676664 3 678888888999998763
No 390
>TIGR02719 repress_PhaQ poly-beta-hydroxybutyrate-responsive repressor. Members of this family are transcriptional regulatory proteins found in the vicinity of poly-beta-hydroxybutyrate (PHB) operons in several species of Bacillus. This protein appears to have repressor activity modulated by PHB itself. This protein belongs to the larger PadR family (see pfam03551).
Probab=58.90 E-value=21 Score=29.86 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCeEEc----C-----CeEEeCcchHHHHHHHHHH
Q psy2383 349 KIIESKLKNAEKLGLLKRN----N-----KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 349 ~~~~~~l~~l~~~gl~~~~----~-----~~~~lT~~G~~~~~~i~~~ 387 (391)
..+.+.|..|++.|||+.. + ..++||+.|+-........
T Consensus 58 GtLYp~L~RLE~~GlI~~~~~~~~~gp~RK~Y~LTe~Gr~~L~~~~~~ 105 (138)
T TIGR02719 58 GNVYRTLRKLEKDNLISSQWDTSAEGPAKRIYSLTDAGEQYLSMCANS 105 (138)
T ss_pred ChHHHHHHHHHHCCCEEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 4578999999999999852 2 2377999999877766443
No 391
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=58.76 E-value=10 Score=29.06 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCeEE-cCCeEEeCcchHHHHH
Q psy2383 352 ESKLKNAEKLGLLKR-NNKNIKPTSFGRYFLN 382 (391)
Q Consensus 352 ~~~l~~l~~~gl~~~-~~~~~~lT~~G~~~~~ 382 (391)
.=.+..|...|+++. ..+.++||++|+-++.
T Consensus 58 ~Wa~~~L~~aGli~~~~rG~~~iT~~G~~~l~ 89 (92)
T PF14338_consen 58 RWARSYLKKAGLIERPKRGIWRITEKGRKALA 89 (92)
T ss_pred HHHHHHHHHCCCccCCCCCceEECHhHHHHHh
Confidence 335788999999987 4688999999998764
No 392
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.33 E-value=1.1e+02 Score=28.82 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=66.6
Q ss_pred eEEEEeCCCCCCCCHH--------------HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 70 HTIFIGGGTPSLISDT--------------GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 70 ~~i~~gGGtps~l~~~--------------~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
..+..|||.|--++.. .+...+..+++.++. ...|.+|+. +.|.+....++|++.|. +
T Consensus 137 ~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~--~~~I~VEv~----tleea~~A~~~GaDiI~--L 208 (273)
T PRK05848 137 YSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPF--TAKIEIECE----SLEEAKNAMNAGADIVM--C 208 (273)
T ss_pred HHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCC--CceEEEEeC----CHHHHHHHHHcCCCEEE--E
Confidence 4567888875443322 234555666665442 245666643 56677777789999776 3
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 136 qS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
+.+ +.+++.++++.++...+++-+-. -| |=|++ ++....++|+|.|++-.++.
T Consensus 209 Dn~------------~~e~l~~~v~~~~~~~~~~~ieA-sG--gIt~~----ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 209 DNM------------SVEEIKEVVAYRNANYPHVLLEA-SG--NITLE----NINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CCC------------CHHHHHHHHHHhhccCCCeEEEE-EC--CCCHH----HHHHHHHcCCCEEEeChhhc
Confidence 443 56667777776543344443322 22 33554 44666789999999877653
No 393
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=58.11 E-value=1.1e+02 Score=26.82 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee---CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA---NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN 144 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~---~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~ 144 (391)
+++.|=+ |||.. ...=.+.+..+++.++ +..+-+.. +|+ ...++.+.++|.+.|++-..+..
T Consensus 24 ~v~~iev--~~~l~--~~~g~~~i~~l~~~~~---~~~i~~d~k~~d~~---~~~~~~~~~~Gad~i~vh~~~~~----- 88 (206)
T TIGR03128 24 YVDIIEI--GTPLI--KNEGIEAVKEMKEAFP---DRKVLADLKTMDAG---EYEAEQAFAAGADIVTVLGVADD----- 88 (206)
T ss_pred CeeEEEe--CCHHH--HHhCHHHHHHHHHHCC---CCEEEEEEeeccch---HHHHHHHHHcCCCEEEEeccCCH-----
Confidence 3555555 34432 2222456677777653 23344333 343 23588899999999998776521
Q ss_pred HhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
..+.+.++.+++. .+ +.++++ + |.. ..+.++.+.+++++.+.++
T Consensus 89 --------~~~~~~i~~~~~~g~~-~~~~~~-~-~~t----~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 89 --------ATIKGAVKAAKKHGKE-VQVDLI-N-VKD----KVKRAKELKELGADYIGVH 133 (206)
T ss_pred --------HHHHHHHHHHHHcCCE-EEEEec-C-CCC----hHHHHHHHHHcCCCEEEEc
Confidence 3455677777776 54 333221 1 333 3334455677899988664
No 394
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=58.06 E-value=50 Score=30.42 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=42.9
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCeEEeCcchHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKNIKPTSFGRYFLND 383 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~~~lT~~G~~~~~~ 383 (391)
..++..+++.+..|.+...+...|..|++.||+..+ +++++|+++=..+...
T Consensus 26 ~~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~~lg~~ 79 (257)
T PRK15090 26 EREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGAK 79 (257)
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHHHHHHH
Confidence 346889999999999888888999999999999875 4789999776555543
No 395
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=58.04 E-value=1e+02 Score=28.22 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEE---EEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHH
Q psy2383 82 ISDTGLDYLLKNIKKLLLFKKNISI---TLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYA 158 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~~~~~~~ei---t~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~ 158 (391)
+++..++.+++....+.+. ..+ |.-..|..+=+++++..+++|| .++.| -|+-+..+.+ ..+.+-
T Consensus 9 l~~~~~~d~Le~~g~yID~---lKfg~Gt~~l~~~~~l~eki~la~~~~V-~v~~G-Gtl~E~~~~q-------~~~~~Y 76 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDYITF---VKFGWGTSALIDRDIVKEKIEMYKDYGI-KVYPG-GTLFEIAHSK-------GKFDEY 76 (237)
T ss_pred CCHHHHHHHHHHhhhheee---EEecCceEeeccHHHHHHHHHHHHHcCC-eEeCC-ccHHHHHHHh-------hhHHHH
Confidence 4788999999988887553 233 2223465566789999999999 89999 5555554422 467778
Q ss_pred HHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 159 IEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 159 i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
++.+++. |.. +.+--|.=.=+.+++.+-++.+.+.+..
T Consensus 77 l~~~k~lGf~~--IEiS~G~~~i~~~~~~rlI~~~~~~g~~ 115 (237)
T TIGR03849 77 LNECDELGFEA--VEISDGSMEISLEERCNLIERAKDNGFM 115 (237)
T ss_pred HHHHHHcCCCE--EEEcCCccCCCHHHHHHHHHHHHhCCCe
Confidence 8889999 863 4445565456778899999999988754
No 396
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.00 E-value=37 Score=29.49 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhccCcccCCCeeEEEEeCC---CC-CCCCHHHHHHHHHHHHHhCCCC--CCcEEEEeeCCCCCC---
Q psy2383 46 EKKYLEALLIDVELSLPIILNRKIHTIFIGGG---TP-SLISDTGLDYLLKNIKKLLLFK--KNISITLEANPSTFE--- 116 (391)
Q Consensus 46 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGG---tp-s~l~~~~l~~ll~~i~~~~~~~--~~~eit~e~~p~~l~--- 116 (391)
+.+.++.+.+.++.... + +++.+.+..| .+ .....+.+..+.+.+++..... .++.+.+|..|....
T Consensus 66 r~~~~~~~~~~i~~a~~-l---g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~ 141 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKR-L---GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETP 141 (213)
T ss_dssp HHHHHHHHHHHHHHHHH-H---TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEE
T ss_pred hHHHHHHHHHHHHHHHH-h---CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccch
Confidence 55666666666654322 2 4566666655 22 2223345555555555433221 257899998777664
Q ss_pred ---HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceE
Q psy2383 117 ---IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL 171 (391)
Q Consensus 117 ---~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~ 171 (391)
++..+.+++.+-..+.+-+.+.+--.- .++..+.++.+.+.+..+++
T Consensus 142 ~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~--------~~~~~~~i~~~~~~i~~vHi 191 (213)
T PF01261_consen 142 FSVEEIYRLLEEVDSPNVGICFDTGHLIMA--------GEDPDEAIKRLAPRIKHVHI 191 (213)
T ss_dssp SSHHHHHHHHHHHTTTTEEEEEEHHHHHHT--------THHHHHHHHHHHHGEEEEEE
T ss_pred hhHHHHHHHHhhcCCCcceEEEehHHHHHc--------CCCHHHHHHHhhcceeEEEE
Confidence 888999999987777776665433222 45666777777776444665
No 397
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=57.89 E-value=33 Score=31.73 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=34.6
Q ss_pred hhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 337 PNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
...-++..+.....+- +.|+....--|+.+++.+++||+.|..+.+.+.
T Consensus 18 ~s~AA~~L~isqpavS~~I~~LE~~lG~~LF~R~~r~~~lT~~G~~l~~~a~ 69 (275)
T PRK03601 18 FGRAAESLYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTAAGERLLPYAE 69 (275)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhCCceEEECCCceEECHhHHHHHHHHH
Confidence 4444555666554443 445555557799999999999999999887764
No 398
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.75 E-value=1.7e+02 Score=27.55 Aligned_cols=133 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCC
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGIN 129 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~ 129 (391)
.+.++...+++-..+++.|+..| |....|+.+.-.++++.+.+. ......+-+-+.. +. +-+..+..+++|++
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~--~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEE--TAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH--hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Q ss_pred EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 130 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 130 risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
-+.+-.-.+. ..+.+.+.+-.+.+.++.+ +.+ ++|..||-+.. .+.+..+.+-.|.-+.+
T Consensus 97 ~v~~~pP~y~---------~~~~~~i~~~f~~v~~~~~-~pi-~lYn~~g~~l~--~~~l~~L~~~~pnivgi 156 (289)
T cd00951 97 GILLLPPYLT---------EAPQEGLYAHVEAVCKSTD-LGV-IVYNRANAVLT--ADSLARLAERCPNLVGF 156 (289)
T ss_pred EEEECCCCCC---------CCCHHHHHHHHHHHHhcCC-CCE-EEEeCCCCCCC--HHHHHHHHhcCCCEEEE
No 399
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=57.51 E-value=42 Score=27.07 Aligned_cols=65 Identities=11% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCC
Q psy2383 49 YLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPST 114 (391)
Q Consensus 49 y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~ 114 (391)
..+++++-+...++..+..+|..|.+.=|-.|..+++.++.-++.+.+.- +..++++.+|.-|..
T Consensus 6 la~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~FaFev~~egT-~aega~l~Ie~~p~~ 70 (115)
T COG0375 6 LAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFAFEVVAEGT-IAEGAELHIEEEPAE 70 (115)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHHHHHHhccC-cccCCEEEEEEeccE
Confidence 45566666665555455667999999999999999999999999998753 346678888876643
No 400
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=57.51 E-value=65 Score=30.95 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=64.5
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHH--------HHHHHHhCCCCCCc-EEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYL--------LKNIKKLLLFKKNI-SITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~l--------l~~i~~~~~~~~~~-eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
.+++.|.+.+.+.++++++.++++ ++.+++.- ++. -+.+.. + +...++.+++.|++-+|++-.
T Consensus 189 aGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~---~~~~ilh~cg--~--~~~~~~~~~~~~~~~~s~d~~- 260 (335)
T cd00717 189 AGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRL---PGVPVILFAK--G--AGGLLEDLAQLGADVVGLDWR- 260 (335)
T ss_pred hCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcC--C--CHHHHHHHHhcCCCEEEeCCC-
Confidence 467778777777789999887654 33444421 111 122222 2 347899999999988877632
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHh-h--cccceEeEecCCCCCCHHHHHHHHHHHHhcCCC---eEEEecccccCCC
Q psy2383 138 FNNKYLNILGRTHDSKQAKYAIEIAKQ-Y--FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP---HLSLYSLTIEPNT 211 (391)
Q Consensus 138 ~~~~~l~~l~R~~~~~~~~~~i~~~~~-~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~---~is~y~l~~~pgT 211 (391)
.+ +.++.+.+.+ . .-|+.-++++ + |.+++.+..+.+++...+ .|---...+.|+|
T Consensus 261 ------------~d---l~e~k~~~g~~~~i~Gni~p~~l~---~-~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~t 321 (335)
T cd00717 261 ------------VD---LDEARKRLGPKVALQGNLDPALLY---A-PKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDT 321 (335)
T ss_pred ------------CC---HHHHHHHhCCCeEEEeCCChhhhc---C-CHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCc
Confidence 12 2233333332 2 2233333333 2 346677666666653322 2322234456677
Q ss_pred ccc
Q psy2383 212 YFF 214 (391)
Q Consensus 212 ~l~ 214 (391)
|..
T Consensus 322 p~e 324 (335)
T cd00717 322 PPE 324 (335)
T ss_pred CHH
Confidence 654
No 401
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=57.41 E-value=34 Score=32.09 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=38.5
Q ss_pred hhhcCCC-ChhHHHHHhC--CCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcc
Q psy2383 329 LRLKDGF-SPNLFFERTG--INIKIIESKLKNAEKLGLLKRNN-KNIKPTSF 376 (391)
Q Consensus 329 lr~~~g~-~~~~~~~~~~--~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~ 376 (391)
+.+..|- |.+.++++.+ ++.+++...|+.|++.||++.++ +.+..|.+
T Consensus 131 ~~~~~~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~~g~y~~t~~ 182 (271)
T TIGR02147 131 LGVMPFADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNEDGFYKQTDK 182 (271)
T ss_pred hhcCCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECCCCcEEeecc
Confidence 4555665 8888999888 56677899999999999999875 46888865
No 402
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=57.32 E-value=63 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=38.0
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~ 379 (391)
++...++...|...+.+...++.|++.|++...+ +++.+.+.-++
T Consensus 180 lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~I~D~~~L 225 (230)
T PRK09391 180 MSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGARQIELRNRQAL 225 (230)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEEEcCHHHH
Confidence 5567889999999888899999999999999876 78999875543
No 403
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=57.31 E-value=85 Score=26.11 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-----------------CCeEEEecccccCCCcccCCCCC-CCCCHHHHHHHHHHHHHHHH
Q psy2383 178 PNQTLSELMLDLNYAIQYS-----------------PPHLSLYSLTIEPNTYFFKYPPL-SMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~-----------------~~~is~y~l~~~pgT~l~~~~~~-~~p~~~~~~~~~~~~~~~L~ 239 (391)
++.|.+++....++++.+. -.-+++..+++...|.-.+++.+ ....++...++|+...+.|.
T Consensus 35 ~~Dt~~~a~~l~~Ki~~lRiF~D~~gKmN~sv~di~G~iL~VSQFTL~adt~kG~RPsFs~aa~p~~A~~lYe~f~~~lr 114 (145)
T COG1490 35 HDDTEEDADYLAEKILNLRIFEDEEGKMNLSVQDVGGEILVVSQFTLYADTKKGRRPSFSKAAKPDQAEELYEYFVELLR 114 (145)
T ss_pred CCCCHHHHHHHHHHHhceEeecCcccccccCHHHcCCcEEEEEEEEEeecccCCCCCCccccCChHHHHHHHHHHHHHHH
Confidence 4556666666666666542 24467788888888876666653 23456778899999999999
Q ss_pred HCCCc
Q psy2383 240 NNYYK 244 (391)
Q Consensus 240 ~~Gy~ 244 (391)
+.|..
T Consensus 115 ~~~~~ 119 (145)
T COG1490 115 ELGIK 119 (145)
T ss_pred hcCCc
Confidence 98843
No 404
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=57.23 E-value=76 Score=30.93 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.++..+.+++... +++.|++.+ |-..+.|.++.+++..+++.++. .++.+=+ +.+.-....+..+ +
T Consensus 197 ~~l~~~~~~~~~~-------Gad~I~l~D-T~G~a~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~lAA~-~ 264 (347)
T PLN02746 197 SKVAYVAKELYDM-------GCYEISLGD-TIGVGTPGTVVPMLEAVMAVVPV---DKLAVHFHDTYGQALANILVSL-Q 264 (347)
T ss_pred HHHHHHHHHHHHc-------CCCEEEecC-CcCCcCHHHHHHHHHHHHHhCCC---CeEEEEECCCCChHHHHHHHHH-H
Confidence 4555666666432 478899877 77788999999999999987652 2344444 2332244555555 5
Q ss_pred CCCCEEEEecCCC
Q psy2383 126 IGINRLSIGIQSF 138 (391)
Q Consensus 126 ~Gv~risiGvqS~ 138 (391)
+|+++|...+-.+
T Consensus 265 aGa~~vd~sv~Gl 277 (347)
T PLN02746 265 MGISTVDSSVAGL 277 (347)
T ss_pred hCCCEEEEecccc
Confidence 7999998877653
No 405
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=57.20 E-value=1.7e+02 Score=27.48 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=67.6
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHH-HHhC
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL-NILG 147 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l-~~l~ 147 (391)
|+.|=+ |++ .....+.+...+... +. ...++...+| +.+-++...++|++.|.+-+ |.++..+ +.+|
T Consensus 40 v~~IE~----~s~-~~~d~~~v~~~~~~~--~~-~~~v~~~~r~---~~~die~A~~~g~~~v~i~~-s~S~~~~~~~~~ 107 (279)
T cd07947 40 IRQTEF----FLY-TEKDREAVEACLDRG--YK-FPEVTGWIRA---NKEDLKLVKEMGLKETGILM-SVSDYHIFKKLK 107 (279)
T ss_pred cceEEe----cCc-ChHHHHHHHHHHHcC--CC-CCEEEEEecC---CHHHHHHHHHcCcCEEEEEE-cCCHHHHHHHhC
Confidence 566655 233 345556666555432 11 1345555555 45667888889999999977 6666655 5777
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHH--------HHHHHHHHHHhcCCC-eEEEe
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLS--------ELMLDLNYAIQYSPP-HLSLY 203 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e--------~~~~~l~~~~~l~~~-~is~y 203 (391)
+.. ..+.+.++++.+++. .. +.+.+ -+-+.. -+.+-++.+.+.|++ .|++-
T Consensus 108 ~t~~e~l~~~~~~v~~a~~~g~~-v~~~~----ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~ 170 (279)
T cd07947 108 MTREEAMEKYLEIVEEALDHGIK-PRCHL----EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC 170 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCe-EEEEE----EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec
Confidence 653 445566677777776 43 44444 232322 233334444558888 56543
No 406
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=57.16 E-value=1.8e+02 Score=27.82 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHH---hHHCCCCEEEEecCCCCHHHHH
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHS---YSIIGINRLSIGIQSFNNKYLN 144 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~---l~~~Gv~risiGvqS~~~~~l~ 144 (391)
+..+-++--+|...+..-..++++.+++. +. ..-+++++ +|..++++.++. ++++|+ .+++|+. +++
T Consensus 168 v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~--~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi---~v~~q~v---Ll~ 238 (321)
T TIGR03822 168 VKIVRFHTRVPVADPARVTPALIAALKTS-GK--TVYVALHANHARELTAEARAACARLIDAGI---PMVSQSV---LLR 238 (321)
T ss_pred ccEEEEeCCCcccChhhcCHHHHHHHHHc-CC--cEEEEecCCChhhcCHHHHHHHHHHHHcCC---EEEEEee---EeC
Confidence 55566664333222221224555555543 21 24567776 466666655554 555675 5666552 111
Q ss_pred HhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC-----CCHHHHHHHHHHHHhc
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN-----QTLSELMLDLNYAIQY 195 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-----qt~e~~~~~l~~~~~l 195 (391)
|-..+.+++.+.++.+.+. +....+..+.-.|| -+.++..+.++.+.+.
T Consensus 239 --gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~ 293 (321)
T TIGR03822 239 --GVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGR 293 (321)
T ss_pred --CCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHh
Confidence 1135667778888888887 65466666666666 3556667777766653
No 407
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=56.91 E-value=54 Score=34.63 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=81.3
Q ss_pred EEEEeeCCCCC-------------CHHHHHHhHHCCCCEEEEec--CC---------CC-H---HHHH-HhC-CCCCHHH
Q psy2383 105 SITLEANPSTF-------------EIEKFHSYSIIGINRLSIGI--QS---------FN-N---KYLN-ILG-RTHDSKQ 154 (391)
Q Consensus 105 eit~e~~p~~l-------------~~e~l~~l~~~Gv~risiGv--qS---------~~-~---~~l~-~l~-R~~~~~~ 154 (391)
.+.+.++|.++ ++...+.|++.||+-|-++. +| -. | ++.. .+. +-.|.++
T Consensus 52 ~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eD 131 (688)
T TIGR02455 52 SVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEE 131 (688)
T ss_pred CeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHH
Confidence 45555666554 56788899999999988763 23 11 1 1111 222 3458999
Q ss_pred HHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHH
Q psy2383 155 AKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDK 233 (391)
Q Consensus 155 ~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~ 233 (391)
+.+.++.+++. +. |-+||+.+--+...+ |+.. ..-..+.-.+|...-.|-.-..-.+. .|+.-....+-..
T Consensus 132 f~~L~~~Ah~~G~~-vi~DlVpnHTs~ghd-F~lA----r~~~~~Y~g~Y~mvei~~~~W~vwpd--~~~~~~~~~l~~~ 203 (688)
T TIGR02455 132 LIQLSRMAAAHNAI-TIDDIIPAHTGKGAD-FRLA----ELAHGDYPGLYHMVEIREEDWALLPE--VPAGRDAVNLLPA 203 (688)
T ss_pred HHHHHHHHHHCCCE-EEEEeCCCCCCCCcc-hHHH----hhcCCCCCCceeeccccccccccCCC--CCcccccccccHH
Confidence 99999999999 76 999999887665555 5432 22233444577655444322211111 1222222334456
Q ss_pred HHHHHHHCCCceec
Q psy2383 234 ITSLLKNNYYKNYE 247 (391)
Q Consensus 234 ~~~~L~~~Gy~~ye 247 (391)
+.+.|.++||..|.
T Consensus 204 ~~~~L~~~g~i~~~ 217 (688)
T TIGR02455 204 QCDELKAKHYIVGQ 217 (688)
T ss_pred HHHHHhhccCcccc
Confidence 77889999998885
No 408
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.77 E-value=8.4 Score=32.76 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=21.2
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCCc
Q psy2383 12 KKLPPLSLYIHFPWCIKKCPYCDFHS 37 (391)
Q Consensus 12 ~~~~~~~lYihiPfC~~~C~yC~~~~ 37 (391)
++..|-.=|+-+-|=...|.||..-+
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~K 61 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFK 61 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHH
Confidence 46667788999999999999997443
No 409
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=56.72 E-value=29 Score=33.53 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=75.8
Q ss_pred CCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC----------CC----C
Q psy2383 115 FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA----------LP----N 179 (391)
Q Consensus 115 l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G----------lP----g 179 (391)
...+.++.||++|+|.|.+-| =-||.. +-..+.+.+.+..++++++ +. +-+||-|- +| +
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRv-wv~P~~----~g~~~~~~~~~~akrak~~Gm~-vlldfHYSD~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRV-WVNPYD----GGYNDLEDVIALAKRAKAAGMK-VLLDFHYSDFWADPGKQNKPAAWAN 98 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE--SS-TT----TTTTSHHHHHHHHHHHHHTT-E-EEEEE-SSSS--BTTB-B--TTCTS
T ss_pred CCCCHHHHHHhcCCCeEEEEe-ccCCcc----cccCCHHHHHHHHHHHHHCCCe-EEEeecccCCCCCCCCCCCCccCCC
Confidence 357799999999999777766 223333 4456889999999999999 76 99999883 22 3
Q ss_pred CCHHHHHH--------HHHHHHhcC--CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccc
Q psy2383 180 QTLSELML--------DLNYAIQYS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249 (391)
Q Consensus 180 qt~e~~~~--------~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~ 249 (391)
.+.+++.+ +|+.+.+.| |+.|++=. .+-.|-. .... ...+-+....+...+.+..++.+=..--+-
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGN-Ein~Gml-wp~g--~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGN-EINNGML-WPDG--KPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESS-SGGGEST-BTTT--CTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCc-ccccccc-CcCC--CccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 46666653 445555555 67676654 1122211 1111 134556677788777787777444333345
Q ss_pred ccccCCc
Q psy2383 250 AYSKTGY 256 (391)
Q Consensus 250 ~fa~~g~ 256 (391)
|.+.++.
T Consensus 175 H~~~~~~ 181 (332)
T PF07745_consen 175 HLANGGD 181 (332)
T ss_dssp EES-TTS
T ss_pred EECCCCc
Confidence 5666554
No 410
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=56.71 E-value=95 Score=28.99 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=39.8
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|++.+ |-..+.|+.+.+++..+++.++ +..+.+=++ ...-....+..+ ++|+++|.-.+-.
T Consensus 164 g~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~l~~H~Hnd~Gla~An~laA~-~aGa~~id~s~~G 230 (273)
T cd07941 164 GADWLVLCD-TNGGTLPHEIAEIVKEVRERLP---GVPLGIHAHNDSGLAVANSLAAV-EAGATQVQGTING 230 (273)
T ss_pred CCCEEEEec-CCCCCCHHHHHHHHHHHHHhCC---CCeeEEEecCCCCcHHHHHHHHH-HcCCCEEEEeccc
Confidence 456777766 5666778888888888887653 233444332 322245555555 4688887765543
No 411
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=56.49 E-value=28 Score=30.67 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=36.2
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
+....++...|.....+...+..|+++|++..+++.|.++.
T Consensus 169 ~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~~~i~i~~ 209 (211)
T PRK11753 169 ITRQEIGRIVGCSREMVGRVLKMLEDQGLISAHGKTIVVYG 209 (211)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEec
Confidence 45577888999988888899999999999999999999875
No 412
>PRK15447 putative protease; Provisional
Probab=56.44 E-value=1.8e+02 Score=27.57 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.6
Q ss_pred CeeEEEEeCCCCCC---CCHHHHHHHHHHHHHhCCCCCCcEEEEee
Q psy2383 68 KIHTIFIGGGTPSL---ISDTGLDYLLKNIKKLLLFKKNISITLEA 110 (391)
Q Consensus 68 ~~~~i~~gGGtps~---l~~~~l~~ll~~i~~~~~~~~~~eit~e~ 110 (391)
+++.||+|+...+. ++.+.+.+.++.+++. +.++.+.+
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~-----gkkvyva~ 68 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAA-----GKEVVLST 68 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHc-----CCEEEEEe
Confidence 58999999866553 6788889998888764 45777644
No 413
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=56.32 E-value=60 Score=28.93 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-c
Q psy2383 89 YLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 166 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~ 166 (391)
++++.|++..++ ..++.+.+ +| ...++.++++|+++|++=+|+.++ ..+.++.++++ .
T Consensus 47 ~~i~~i~~~~~~--~~DvHLMv~~P----~~~i~~~~~~g~~~i~~H~E~~~~--------------~~~~i~~ik~~g~ 106 (201)
T PF00834_consen 47 DIIKAIRKITDL--PLDVHLMVENP----ERYIEEFAEAGADYITFHAEATED--------------PKETIKYIKEAGI 106 (201)
T ss_dssp HHHHHHHTTSSS--EEEEEEESSSG----GGHHHHHHHHT-SEEEEEGGGTTT--------------HHHHHHHHHHTTS
T ss_pred HHHHHHhhcCCC--cEEEEeeeccH----HHHHHHHHhcCCCEEEEcccchhC--------------HHHHHHHHHHhCC
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
. +.+.+. |+...+.+..-+. .+|.|.+- ++.||.. ..+-.+...+....+++...++|+.
T Consensus 107 k---~Gialn-P~T~~~~~~~~l~-----~vD~VlvM--sV~PG~~-------Gq~f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 107 K---AGIALN-PETPVEELEPYLD-----QVDMVLVM--SVEPGFG-------GQKFIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp E---EEEEE--TTS-GGGGTTTGC-----CSSEEEEE--SS-TTTS-------SB--HGGHHHHHHHHHHHHHHHTCG
T ss_pred C---EEEEEE-CCCCchHHHHHhh-----hcCEEEEE--EecCCCC-------cccccHHHHHHHHHHHHHHHhcCCc
No 414
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=56.29 E-value=71 Score=24.29 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=37.1
Q ss_pred EEEeCCCCCC-CCHHHHHHHHHHHHHhCCCCCCcEEEE-ee-CCCCCCHHHHHHhHHCCCCEEEE
Q psy2383 72 IFIGGGTPSL-ISDTGLDYLLKNIKKLLLFKKNISITL-EA-NPSTFEIEKFHSYSIIGINRLSI 133 (391)
Q Consensus 72 i~~gGGtps~-l~~~~l~~ll~~i~~~~~~~~~~eit~-e~-~p~~l~~e~l~~l~~~Gv~risi 133 (391)
|+.+=|+|.- -..+.+.++.+.+++.++. ....+.+ +. .|. -++.++.|++.|+++|-+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~-~~v~~a~~~~~~P~--i~~~l~~l~~~g~~~vvv 64 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPD-FPYYVGFQSGLGPD--TEEAIRELAEEGYQRVVI 64 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCC--HHHHHHHHHHcCCCeEEE
Confidence 4556677643 2345778888888877542 2233333 33 342 467889999999988665
No 415
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=56.28 E-value=46 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK 365 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~ 365 (391)
+..|.. ......++.+.+|.+...+..-|..|.+.|+++
T Consensus 8 l~~L~~-~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 8 LKLLSE-GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHTT-SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHh-CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 334443 557888999999998888889999999999986
No 416
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=55.91 E-value=80 Score=28.90 Aligned_cols=94 Identities=12% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-c--ccceEeEecCCCC-------
Q psy2383 111 NPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F--NNFNLDLIYALPN------- 179 (391)
Q Consensus 111 ~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~--~~v~~dlI~GlPg------- 179 (391)
-|..++ .|+|...|++|++-|.+.|.-.|++. .++ .-+.++....++.+.+. + ++.++.--=-+|-
T Consensus 14 lp~~~sW~erl~~AK~~GFDFvEmSvDEsDeRL-aRL--DWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~ 90 (287)
T COG3623 14 LPNGFSWLERLALAKELGFDFVEMSVDESDERL-ARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEAT 90 (287)
T ss_pred ccCCCCHHHHHHHHHHcCCCeEEEeccchHHHH-Hhc--CCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHH
Confidence 466676 78999999999999999997766543 333 24777888888888887 4 3333322112331
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 180 --QTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 180 --qt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
|..+-+...++.+.++|+..|++-.+.+
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQLAGYDV 120 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQLAGYDV 120 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEeecccee
Confidence 3345566677788889999998877664
No 417
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=55.80 E-value=80 Score=29.11 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=52.1
Q ss_pred EEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHH-hhcccceEeEecC---------
Q psy2383 107 TLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK-QYFNNFNLDLIYA--------- 176 (391)
Q Consensus 107 t~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~-~~~~~v~~dlI~G--------- 176 (391)
.+.+..+--+.+.++.+..+|++++.+|-..+.+ ++.+.+..+..- +.+- +++|+-=|
T Consensus 76 pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~-----------p~~~~~~~~~~~~~~iv-~slD~~~g~~~~~~~~~ 143 (254)
T TIGR00735 76 PLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN-----------PELIYELADRFGSQCIV-VAIDAKRVYVNSYCWYE 143 (254)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC-----------hHHHHHHHHHcCCCCEE-EEEEeccCCCCCCccEE
Confidence 3334344347888888889999999999655421 222333333322 2222 55665211
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCCeEEEecc
Q psy2383 177 -----LPNQTLSELMLDLNYAIQYSPPHLSLYSL 205 (391)
Q Consensus 177 -----lPgqt~e~~~~~l~~~~~l~~~~is~y~l 205 (391)
-...+..+..+.++.+.+.+++.|.+...
T Consensus 144 v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i 177 (254)
T TIGR00735 144 VYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSM 177 (254)
T ss_pred EEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCc
Confidence 12234566677778888999999988664
No 418
>PLN02417 dihydrodipicolinate synthase
Probab=55.77 E-value=1.8e+02 Score=27.24 Aligned_cols=98 Identities=8% Similarity=-0.003 Sum_probs=58.7
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.++.+.+.|++.|.++=-|+.-.. .|.++-.+.++.+.+... -.+-+|.|.-..+.++..+-.+.+.++|+|
T Consensus 27 ~i~~l~~~Gv~Gi~~~GstGE~~~-------ls~~Er~~~~~~~~~~~~-~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 27 LVNMQIENGAEGLIVGGTTGEGQL-------MSWDEHIMLIGHTVNCFG-GKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred HHHHHHHcCCCEEEECccCcchhh-------CCHHHHHHHHHHHHHHhC-CCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 445555678888877544332111 245555666666555521 124567888777788888888888888888
Q ss_pred eEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 199 HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 199 ~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
.+.+-+ |.+. .|++++..+.|..+.+
T Consensus 99 av~~~~-------P~y~-----~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 99 AALHIN-------PYYG-----KTSQEGLIKHFETVLD 124 (280)
T ss_pred EEEEcC-------CccC-----CCCHHHHHHHHHHHHh
Confidence 775543 2221 2455666666655444
No 419
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=55.76 E-value=37 Score=24.20 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.4
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
....+.+.++++|.+........+++|++.|++...+
T Consensus 17 ~~~~S~S~lQR~~~IGynrAariid~lE~~GiV~p~~ 53 (63)
T smart00843 17 TQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPAN 53 (63)
T ss_pred hCCCChHHHHHHHhcchhHHHHHHHHHHHCcCCCCCC
Confidence 3557889999999887777778899999999997543
No 420
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=55.73 E-value=60 Score=29.31 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=54.8
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC---
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN--- 179 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg--- 179 (391)
.++.+-..+. +.+.++.+.+.|++.+-+|-..+. +++.+.++++...+. +. +++|+--|+++
T Consensus 75 ~pv~~~ggi~--~~~d~~~~~~~G~~~vilg~~~l~-----------~~~~~~~~~~~~~~~~i~-vsld~~~~~~~~~~ 140 (232)
T TIGR03572 75 MPLTVGGGIR--SLEDAKKLLSLGADKVSINTAALE-----------NPDLIEEAARRFGSQCVV-VSIDVKKELDGSDY 140 (232)
T ss_pred CCEEEECCCC--CHHHHHHHHHcCCCEEEEChhHhc-----------CHHHHHHHHHHcCCceEE-EEEEeccCCCCCcE
Confidence 3455555554 566777788899999999943322 223344444443333 44 67776554321
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 180 ---------QTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 180 ---------qt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+|..+..+.++.+.+.+++.+.+....
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~ 176 (232)
T TIGR03572 141 KVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSID 176 (232)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 234445667788888999999888754
No 421
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=55.73 E-value=44 Score=31.11 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=43.3
Q ss_pred hHHHHHHHHh---hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeC
Q psy2383 319 CLIFEFMLNA---LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374 (391)
Q Consensus 319 ~~~~e~~~~~---lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT 374 (391)
++++.++-.. |+....-+.+.+++.||.+-..+..+|-.|.++|++..++..+.|.
T Consensus 228 q~Il~yL~~~gG~mpf~DKSsPEdIk~~FgiSKg~FKrAiGgL~K~g~I~q~g~~t~l~ 286 (287)
T COG2996 228 QMILTYLESNGGFMPFNDKSSPEDIKATFGISKGQFKRAIGGLMKAGKIKQDGDGTELI 286 (287)
T ss_pred HHHHHHHHHcCCccccCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCeEEEcCceEEec
Confidence 4455554322 4555556789999999999888899999999999999988877764
No 422
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.59 E-value=26 Score=33.13 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=44.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
+++.|.+-- ++++.+++..+.++. .+.+|+.. .++.+.++.+++.||+.||+|-=+.
T Consensus 217 gaDiImLDn-----mspe~l~~av~~~~~--------~~~leaSG-GI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 217 GADIIMLDN-----MSLEQIEQAITLIAG--------RSRIECSG-NIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred CCCEEEECC-----CCHHHHHHHHHHhcC--------ceEEEEEC-CCCHHHHHHHHhcCCCEEEeCcccc
Confidence 467777632 478888888876642 45677765 5999999999999999999997554
No 423
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=55.43 E-value=2e+02 Score=27.65 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=65.5
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHH--------HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYL--------LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~l--------l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
.+++.+.+.+.++++++++.++++ ++.+++..+ ...-+.+..+ +...++.+++.|++-+|++- +
T Consensus 192 aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~--~~~ilh~cg~----~~~~~~~~~~~~~~~~s~d~-~- 263 (338)
T TIGR01464 192 AGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLP--NVPVILFAKG----AGHLLEELAETGADVVGLDW-T- 263 (338)
T ss_pred cCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEeCC----cHHHHHHHHhcCCCEEEeCC-C-
Confidence 356777777767789999887544 444444311 1112333332 34678999999999998863 1
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHh--h-cccceEeEecCCCCCCHHHHHHHHHHHHhcCC---CeEEEecccccCCCc
Q psy2383 139 NNKYLNILGRTHDSKQAKYAIEIAKQ--Y-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSP---PHLSLYSLTIEPNTY 212 (391)
Q Consensus 139 ~~~~l~~l~R~~~~~~~~~~i~~~~~--~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~---~~is~y~l~~~pgT~ 212 (391)
.+ +.++.+.+.+ . .-|+.-++++ | |.+++++..+.+++-.. .+|---...+.|+||
T Consensus 264 -----------~d---l~e~~~~~~~~~~i~Gni~p~~l~---g-t~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp 325 (338)
T TIGR01464 264 -----------VD---LKEARKRVGPGVAIQGNLDPAVLY---A-PEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTP 325 (338)
T ss_pred -----------CC---HHHHHHHhCCCeeEEeCCChHHhc---C-CHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcC
Confidence 12 2233333332 1 2334333333 3 67778777777776421 133222344556666
Q ss_pred c
Q psy2383 213 F 213 (391)
Q Consensus 213 l 213 (391)
.
T Consensus 326 ~ 326 (338)
T TIGR01464 326 P 326 (338)
T ss_pred H
Confidence 4
No 424
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=55.22 E-value=43 Score=27.28 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=24.7
Q ss_pred CCCcEEEEeeCCCCCC---HHHHHHhHHCCCCEEEEec
Q psy2383 101 KKNISITLEANPSTFE---IEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 101 ~~~~eit~e~~p~~l~---~e~l~~l~~~Gv~risiGv 135 (391)
.++..+.+.++.+.-- -+.++.++++|+.+|++..
T Consensus 91 ~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~t 128 (129)
T TIGR02801 91 NPDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLIT 128 (129)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEee
Confidence 3455678877665332 3577889999999999864
No 425
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=55.09 E-value=1.7e+02 Score=29.27 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=83.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHH----hHHC-CCCEEEEecCCCCHHHHHHhCCCCCH
Q psy2383 79 PSLISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHS----YSII-GINRLSIGIQSFNNKYLNILGRTHDS 152 (391)
Q Consensus 79 ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~----l~~~-Gv~risiGvqS~~~~~l~~l~R~~~~ 152 (391)
...++.+.+.++++.|++...+ .+|.+.. +|=.++++.|+. +++. ++.+|.+|--+ +-++ .-..|
T Consensus 135 ~~~ls~eei~~~i~yI~~~p~I---~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~--pvv~---P~RIT- 205 (417)
T TIGR03820 135 DSIPSKEQILEGIEYIRNTPQI---RDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRV--PVVL---PQRIT- 205 (417)
T ss_pred cccCCHHHHHHHHHHHHhcCCC---CEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecc--cccc---ccccC-
Confidence 3556788999999999885333 4677775 787777766554 4444 78888887431 1111 00112
Q ss_pred HHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHH
Q psy2383 153 KQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQD 232 (391)
Q Consensus 153 ~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~ 232 (391)
.+.++.++++-. +.+.+=++-|.|..++..+.++.+.+.|+.-. ....+..| .. -+.+...+
T Consensus 206 ---~ell~~Lk~~~~-~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~--nQsVLLkG------VN---D~~~~l~~--- 267 (417)
T TIGR03820 206 ---DELVAILKKHHP-VWLNTHFNHPREITASSKKALAKLADAGIPLG--NQSVLLAG------VN---DCPRIMKK--- 267 (417)
T ss_pred ---HHHHHHHHhcCC-eEEEEeCCChHhChHHHHHHHHHHHHcCCEEE--eeceEECC------cC---CCHHHHHH---
Confidence 134444455411 33444457788988899999999999996421 11122222 11 12233333
Q ss_pred HHHHHHHHCCCceecccc
Q psy2383 233 KITSLLKNNYYKNYEISA 250 (391)
Q Consensus 233 ~~~~~L~~~Gy~~ye~~~ 250 (391)
..+.|.+.|-.+|-+..
T Consensus 268 -L~~~L~~~gV~PYYl~~ 284 (417)
T TIGR03820 268 -LVHKLVANRVRPYYLYQ 284 (417)
T ss_pred -HHHHHHHCCCeeceeee
Confidence 34667789999985543
No 426
>PRK09416 lstR lineage-specific thermal regulator protein; Provisional
Probab=55.08 E-value=23 Score=29.39 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCCeEEc-----CCeEEeCcchHHHHHHHH
Q psy2383 349 KIIESKLKNAEKLGLLKRN-----NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 349 ~~~~~~l~~l~~~gl~~~~-----~~~~~lT~~G~~~~~~i~ 385 (391)
..+.+.|..|++.|||+.. -..+++|++|+-.+....
T Consensus 78 GtIYp~L~RLE~~GlI~s~~~~~~RK~Y~ITe~Gre~L~e~~ 119 (135)
T PRK09416 78 GSLYTLLHRLEQNRFIQSSWDHEGAKYYQLTDKGNKMLRKAE 119 (135)
T ss_pred ccHHHHHHHHHHCCCeEEeecCCCceEEEECHHHHHHHHHHH
Confidence 4578999999999999853 255889999998877654
No 427
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=55.07 E-value=52 Score=33.47 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=41.9
Q ss_pred CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 103 NISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 103 ~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
..+|-+..-|.+-+++.|+.|-++|+|=+-+.+=. .+.++-.+.++.+|++ ..+..+-++.++||
T Consensus 6 kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSH------------G~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkG 72 (477)
T COG0469 6 KTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSH------------GDHEEHKKRIDNVREAAEKLGRPVAILLDLKG 72 (477)
T ss_pred cceEEEEECCCCCCHHHHHHHHHccCcEEEEecCC------------CChHHHHHHHHHHHHHHHHhCCceEEEEcCCC
Confidence 35677777899999999999999998855444322 2444444555555554 22345566666665
No 428
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.98 E-value=78 Score=29.34 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=60.6
Q ss_pred eCCCCC-CHHHHHHhHHCCCCEEEEecCCCCH---------HHHHHhCCCCCHHHHHHHHHHHHhh-cccceE-eEecCC
Q psy2383 110 ANPSTF-EIEKFHSYSIIGINRLSIGIQSFNN---------KYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL-DLIYAL 177 (391)
Q Consensus 110 ~~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~---------~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~-dlI~Gl 177 (391)
..|+.= +.+.++.|.++|++-|.+|+=..|| ...+++..+.+.+++.+.++.+++. .. +-+ -|+|-=
T Consensus 19 G~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~-~plv~m~Y~N 97 (256)
T TIGR00262 19 GDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN-IPIGLLTYYN 97 (256)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCEEEEEecc
Confidence 355422 4566777888889999998855443 3456677888999999999999864 22 222 444433
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 178 PNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
|=- .-.+.+-++.+.+.|++.+.+..
T Consensus 98 pi~-~~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 98 LIF-RKGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred HHh-hhhHHHHHHHHHHcCCCEEEECC
Confidence 310 11234557888899999886654
No 429
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.92 E-value=69 Score=30.08 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=70.7
Q ss_pred CeeEEEEeCC--CCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGG--TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGG--tps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.++++|. ....|+.++-.++++.+.+..+ ..+.+-+-+...+. .-+..+..+++|++.+.+..=.+.
T Consensus 35 Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~--~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~---- 108 (289)
T PF00701_consen 35 GVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA--GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYF---- 108 (289)
T ss_dssp TSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT--TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSS----
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc--CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccc----
Confidence 5899999884 4666788888999998887643 34566666544443 456777788899999987643321
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCC---CCCHHHHHHHHHHHHh
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALP---NQTLSELMLDLNYAIQ 194 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlP---gqt~e~~~~~l~~~~~ 194 (391)
..+.+++.+-.+.+.++-+ +.+ +||..| |-... .+++..+.+
T Consensus 109 -----~~s~~~l~~y~~~ia~~~~-~pi-~iYn~P~~tg~~ls--~~~l~~L~~ 153 (289)
T PF00701_consen 109 -----KPSQEELIDYFRAIADATD-LPI-IIYNNPARTGNDLS--PETLARLAK 153 (289)
T ss_dssp -----SCCHHHHHHHHHHHHHHSS-SEE-EEEEBHHHHSSTSH--HHHHHHHHT
T ss_pred -----cchhhHHHHHHHHHHhhcC-CCE-EEEECCCccccCCC--HHHHHHHhc
Confidence 3567777777777776621 223 467777 33221 234555666
No 430
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.83 E-value=72 Score=28.93 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=51.4
Q ss_pred EEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe------cCC
Q psy2383 105 SITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI------YAL 177 (391)
Q Consensus 105 eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI------~Gl 177 (391)
.+.+ +.+--+.+.++.+.++|+++|.+|-..+.+ .+.+.++.+....- +. +++|.. -|.
T Consensus 78 ~l~v--~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~-----------~~~~~~i~~~~g~~~i~-~sid~~~~~v~~~g~ 143 (241)
T PRK13585 78 PVQL--GGGIRSAEDAASLLDLGVDRVILGTAAVEN-----------PEIVRELSEEFGSERVM-VSLDAKDGEVVIKGW 143 (241)
T ss_pred cEEE--cCCcCCHHHHHHHHHcCCCEEEEChHHhhC-----------hHHHHHHHHHhCCCcEE-EEEEeeCCEEEECCC
Confidence 4454 333337788888889999999998766421 23334444443221 21 455542 232
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 178 PNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
-.++..+..+..+.+.+.+++.|.+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~ 172 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVD 172 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 22232355666677788999999776654
No 431
>PLN02321 2-isopropylmalate synthase
Probab=54.67 E-value=86 Score=33.20 Aligned_cols=113 Identities=8% Similarity=0.055 Sum_probs=57.7
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcC
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYS 196 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~ 196 (391)
+.++.|.++||+.|.+|.=+.++.- .+.+....+.+... .....+--|.++---..+++...++.+...+
T Consensus 112 ~Ia~~L~~lGVd~IEvGfP~~Sp~D---------~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~ 182 (632)
T PLN02321 112 DIARQLAKLGVDIIEAGFPIASPDD---------LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAK 182 (632)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCccH---------HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCC
Confidence 3556677789999999875555542 12211221211111 1112223345552234566655555433444
Q ss_pred CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 197 PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 197 ~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
...|.+|. +-++++.+... -.+.++..++...+.++..+.|..
T Consensus 183 ~~~I~i~~----stSd~h~~~~l-~~t~ee~l~~~~~~V~~Ak~~G~~ 225 (632)
T PLN02321 183 RPRIHTFI----ATSEIHMEHKL-RKTPDEVVEIARDMVKYARSLGCE 225 (632)
T ss_pred CCEEEEEE----cCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCc
Confidence 44566663 33444332221 135667777777777888887764
No 432
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=54.51 E-value=39 Score=31.79 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=48.2
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCH------
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNN------ 140 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~------ 140 (391)
-+.+.|| .|.+-+.+.++++.+.++ .++ .+.++--.....+|. +.|+++|+++|+.|+=++.-
T Consensus 178 AGAD~if----~~al~~~e~i~~f~~av~--~pl--~~N~t~~g~tp~~~~---~~L~~~Gv~~V~~~~~~~raa~~a~~ 246 (289)
T COG2513 178 AGADAIF----PEALTDLEEIRAFAEAVP--VPL--PANITEFGKTPLLTV---AELAELGVKRVSYGLTAFRAALKAAE 246 (289)
T ss_pred cCCcEEc----cccCCCHHHHHHHHHhcC--CCe--eeEeeccCCCCCcCH---HHHHhcCceEEEECcHHHHHHHHHHH
Confidence 4567777 466667788888877775 222 223333322223443 67889999999999866542
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q psy2383 141 KYLNILGRTHDSKQAKYAIEI 161 (391)
Q Consensus 141 ~~l~~l~R~~~~~~~~~~i~~ 161 (391)
.+++.+.+..+.......+..
T Consensus 247 ~~~~~i~~~gt~~~~~d~m~~ 267 (289)
T COG2513 247 QAAREIRREGTQANVLDKMQT 267 (289)
T ss_pred HHHHHHHhcCchhhHHHHHHH
Confidence 233344444444444444433
No 433
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=53.84 E-value=98 Score=28.80 Aligned_cols=62 Identities=8% Similarity=0.195 Sum_probs=37.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+++.|++.+ |-..+.|+++.+++..+++.++ .++.+=+ +...-....+..+ ++|+++|...+
T Consensus 154 g~~~i~l~D-t~G~~~P~~v~~~~~~~~~~~~----~~i~~H~Hn~~Gla~an~~~a~-~aG~~~vd~s~ 217 (262)
T cd07948 154 GVNRVGIAD-TVGIATPRQVYELVRTLRGVVS----CDIEFHGHNDTGCAIANAYAAL-EAGATHIDTTV 217 (262)
T ss_pred CCCEEEECC-cCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCCCChHHHHHHHHH-HhCCCEEEEec
Confidence 456677765 5666777888888888877654 2343333 2222244455555 57887776654
No 434
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=53.79 E-value=2.7e+02 Score=28.79 Aligned_cols=161 Identities=10% Similarity=0.040 Sum_probs=91.7
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHH----------------HHHhHHCCCCEEE
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEK----------------FHSYSIIGINRLS 132 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~----------------l~~l~~~Gv~ris 132 (391)
+..+-+.- .|..++++.+..+. + +++ ..++....+++++. ++.++++|+ .|+
T Consensus 192 ~vgitiEt-RPD~i~~e~L~~L~----~-~G~-----~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~-~v~ 259 (522)
T TIGR01211 192 CVGLTIET-RPDYCREEHIDRML----K-LGA-----TRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGL-KVV 259 (522)
T ss_pred eEEEEEEE-cCCcCCHHHHHHHH----H-cCC-----CEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eEE
Confidence 34444433 68888876654443 3 222 13333344454443 445566777 355
Q ss_pred EecCCCCHHHHHHhC-CCCCHHHHHHHHHHHHh---h-cccceEeEecCCCC--------------CCHHHHHHHHHHHH
Q psy2383 133 IGIQSFNNKYLNILG-RTHDSKQAKYAIEIAKQ---Y-FNNFNLDLIYALPN--------------QTLSELMLDLNYAI 193 (391)
Q Consensus 133 iGvqS~~~~~l~~l~-R~~~~~~~~~~i~~~~~---~-~~~v~~dlI~GlPg--------------qt~e~~~~~l~~~~ 193 (391)
+-+= .| -+.|.++..+.++.+.+ . .+.+.+.-..=.|| -|.++..+.+..+.
T Consensus 260 ~~LM---------~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~ 330 (522)
T TIGR01211 260 YHIM---------PGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIK 330 (522)
T ss_pred EEee---------cCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4321 12 23466777777777654 3 33344443332333 36677777777777
Q ss_pred hcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-------eec--ccccccCCcc
Q psy2383 194 QYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK-------NYE--ISAYSKTGYE 257 (391)
Q Consensus 194 ~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~-------~ye--~~~fa~~g~~ 257 (391)
+.-|+.+.++.+.- .-+ ...++.......+.+.+.+.|.++||. ... ..+|++|+..
T Consensus 331 ~~lp~~i~v~R~qr--dip-----~~~l~ag~~k~~l~~li~~~l~~~G~~~~~ir~reig~~~~~~~~~~~~ 396 (522)
T TIGR01211 331 RMMPKWVRIQRIQR--DIP-----APLIVAGVKKSNLRELVYRRMKEHGITCRCIRCREVGHQMVKPVQPEEE 396 (522)
T ss_pred HhCCcceEEEeecc--CCC-----hhhccCccchHHHHHHHHHHHHHCCCeeccccchhcCcccccccCCCch
Confidence 77677787887631 111 012344446678899999999999999 444 5678888643
No 435
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=53.72 E-value=20 Score=35.06 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeC-CCC------------CCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEAN-PST------------FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGR 148 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~-p~~------------l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R 148 (391)
.|+++++.++.. .+.+.+|.- |.. +.+..++.+++.|++.=.+=||||+++.|+.+.|
T Consensus 152 TL~Evl~lv~~~-----~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~ 222 (356)
T cd08560 152 THKESIALFKSL-----GVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIK 222 (356)
T ss_pred CHHHHHHHHHhc-----CceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHH
Confidence 367788777652 256777773 332 3457888999999861134489999999987744
No 436
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.68 E-value=1.8e+02 Score=27.75 Aligned_cols=103 Identities=9% Similarity=-0.009 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEeeC----CCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHH
Q psy2383 83 SDTGLDYLLKNIKKLLLFKKNISITLEAN----PSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY 157 (391)
Q Consensus 83 ~~~~l~~ll~~i~~~~~~~~~~eit~e~~----p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~ 157 (391)
+++.+.++++.+++..++ .+++-.+ +... ..+.++.+.++|++.|.+.--+-. + ..+.....+
T Consensus 115 ~~~~~~ei~~~vr~~~~~----pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~-------~-~~~~~~~~~ 182 (319)
T TIGR00737 115 DPDLIGKIVKAVVDAVDI----PVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA-------Q-GYSGEANWD 182 (319)
T ss_pred CHHHHHHHHHHHHhhcCC----CEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc-------c-cCCCchhHH
Confidence 677888999999887553 3444443 2222 356778899999999988432211 0 111112345
Q ss_pred HHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 158 AIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 158 ~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.++.+++.. ++-+|..=-=.|.+++.+-++ ..+.|.|.+-
T Consensus 183 ~i~~i~~~~---~ipvi~nGgI~~~~da~~~l~---~~gad~Vmig 222 (319)
T TIGR00737 183 IIARVKQAV---RIPVIGNGDIFSPEDAKAMLE---TTGCDGVMIG 222 (319)
T ss_pred HHHHHHHcC---CCcEEEeCCCCCHHHHHHHHH---hhCCCEEEEC
Confidence 566666642 233333211246666555443 3578877664
No 437
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.47 E-value=88 Score=28.62 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.++..+.+++... +++.|++.+ |-..+.|+++.+++..+++.++ ++.+.+-+ +...-....+..+ +
T Consensus 146 ~~l~~~~~~~~~~-------g~~~i~l~D-t~G~~~P~~v~~li~~l~~~~~---~~~~~~H~Hn~~gla~an~laA~-~ 213 (265)
T cd03174 146 EYVLEVAKALEEA-------GADEISLKD-TVGLATPEEVAELVKALREALP---DVPLGLHTHNTLGLAVANSLAAL-E 213 (265)
T ss_pred HHHHHHHHHHHHc-------CCCEEEech-hcCCcCHHHHHHHHHHHHHhCC---CCeEEEEeCCCCChHHHHHHHHH-H
Confidence 3445555555432 367777765 4556788888999998888754 13444433 3333345566665 5
Q ss_pred CCCCEEEEecCC
Q psy2383 126 IGINRLSIGIQS 137 (391)
Q Consensus 126 ~Gv~risiGvqS 137 (391)
+|+++|.-.+--
T Consensus 214 aG~~~id~s~~G 225 (265)
T cd03174 214 AGADRVDGSVNG 225 (265)
T ss_pred cCCCEEEecccc
Confidence 788888766544
No 438
>PRK08005 epimerase; Validated
Probab=53.39 E-value=1.2e+02 Score=27.21 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-c
Q psy2383 89 YLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-F 166 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~ 166 (391)
.+++.+++..++ ...+.+.+ +| +..++.+.++|++.|++-+|+. ....++++.+|+. .
T Consensus 48 ~~i~~l~~~t~~--~~DvHLMv~~P----~~~i~~~~~~gad~It~H~Ea~--------------~~~~~~l~~Ik~~G~ 107 (210)
T PRK08005 48 KTIQAVAQQTRH--PLSFHLMVSSP----QRWLPWLAAIRPGWIFIHAESV--------------QNPSEILADIRAIGA 107 (210)
T ss_pred HHHHHHHhcCCC--CeEEEeccCCH----HHHHHHHHHhCCCEEEEcccCc--------------cCHHHHHHHHHHcCC
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHH
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYA 192 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~ 192 (391)
. +.+-+. |+...+.+..-+..+
T Consensus 108 k---~GlAln-P~Tp~~~i~~~l~~v 129 (210)
T PRK08005 108 K---AGLALN-PATPLLPYRYLALQL 129 (210)
T ss_pred c---EEEEEC-CCCCHHHHHHHHHhc
No 439
>PF14277 DUF4364: Domain of unknown function (DUF4364)
Probab=53.36 E-value=31 Score=29.72 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCeEEc-----CCeEEeCcchHHHHHHH
Q psy2383 350 IIESKLKNAEKLGLLKRN-----NKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 350 ~~~~~l~~l~~~gl~~~~-----~~~~~lT~~G~~~~~~i 384 (391)
.++..+.+|++.|++..+ ...+.+|++|.-.+...
T Consensus 35 ~lqq~l~eL~es~~i~~~~~~~~~~~y~iTe~G~~tl~~F 74 (163)
T PF14277_consen 35 TLQQALSELVESGLITLETDSDNKTRYSITEKGKETLEFF 74 (163)
T ss_pred HHHHHHHHHHHCCCEEEeeccCCCcEEEECHhhHHHHHHH
Confidence 467899999999999964 37999999998866544
No 440
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.30 E-value=29 Score=32.89 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=44.4
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~ 140 (391)
+++.|.+-. ++++.+++.+..++. .+.+|+.. .++.+.+..+++.||+.||+|-=+.+-
T Consensus 225 GaDiImLDn-----mspe~l~~av~~~~~--------~~~lEaSG-GIt~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 225 GAQSVLLDN-----FTLDMMREAVRVTAG--------RAVLEVSG-GVNFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred CCCEEEECC-----CCHHHHHHHHHhhcC--------CeEEEEEC-CCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 567787743 467788887776532 35677765 599999999999999999999765443
No 441
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=52.72 E-value=1.1e+02 Score=25.48 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=54.4
Q ss_pred CCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCC-cEEEEeeCCC-CCCHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 66 NRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN-ISITLEANPS-TFEIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 66 ~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~-~eit~e~~p~-~l~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
..+++.+|+|-.+| + +++.+.+.+. .++ +-+|+-.... ..-.+.++.|++.|...+.+.+=- ...
T Consensus 29 ~~G~eVi~LG~~vp----~---e~i~~~a~~~---~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG-~~~-- 95 (137)
T PRK02261 29 EAGFEVINLGVMTS----Q---EEFIDAAIET---DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGG-NLV-- 95 (137)
T ss_pred HCCCEEEECCCCCC----H---HHHHHHHHHc---CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEEC-CCC--
Confidence 34689999997754 3 4555555553 222 2223222211 124678888988877544432211 000
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHH
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAI 193 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~ 193 (391)
...++++ +..+.+++ .++|-+|+ ||.+.+++...++...
T Consensus 96 ---~~~~~~~---~~~~~l~~----~G~~~vf~-~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 96 ---VGKHDFE---EVEKKFKE----MGFDRVFP-PGTDPEEAIDDLKKDL 134 (137)
T ss_pred ---CCccChH---HHHHHHHH----cCCCEEEC-cCCCHHHHHHHHHHHh
Confidence 0112222 23333443 33567787 7888888887776654
No 442
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=52.62 E-value=40 Score=20.50 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=22.9
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCe
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLL 364 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~ 364 (391)
...++.+..|...+.+...+..|++.|++
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 45667788888888888999999999986
No 443
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=52.60 E-value=56 Score=29.89 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCH
Q psy2383 83 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 83 ~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~ 140 (391)
..+.+..++..+++ .++++|+=++| +.+.++.-++.|.++|.+--..+-+
T Consensus 108 ~~~~l~~~i~~l~~-----~gI~VSLFiDP---~~~qi~~A~~~GAd~VELhTG~YA~ 157 (237)
T TIGR00559 108 LKDKLCELVKRFHA-----AGIEVSLFIDA---DKDQISAAAEVGADRIEIHTGPYAN 157 (237)
T ss_pred CHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhc
Confidence 34456666666654 36789998888 4899999999999999997666544
No 444
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=52.48 E-value=38 Score=31.46 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=34.3
Q ss_pred hhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 337 PNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
.+.-++..+++...+- ..|+.-...-|+.+++.++.||+.|..+...+-
T Consensus 18 ~s~AA~~L~isqsavS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~~~ 69 (296)
T PRK11242 18 FTRAAEALHVSQPTLSQQIRQLEESLGVQLFDRSGRTVRLTDAGEVYLRYAR 69 (296)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhCCeeEeEcCCceeechhHHHHHHHHH
Confidence 3444455555544443 445555567799999999999999999988764
No 445
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=52.31 E-value=62 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=37.8
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.....+++..|...+.+...|.+|.+.|++...++++.+.+.-.
T Consensus 170 ~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I~d~~~ 213 (226)
T PRK10402 170 EKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLIKNRKQ 213 (226)
T ss_pred chHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEEeCHHH
Confidence 35677889999998889999999999999999999999976433
No 446
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=51.90 E-value=66 Score=25.96 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=41.9
Q ss_pred ccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC
Q psy2383 64 ILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF 115 (391)
Q Consensus 64 ~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l 115 (391)
.+..+|..|.+.=|.-|-..++.|...++.+.+.-++..++++.++.-|..+
T Consensus 21 ~~~~~V~~V~l~IG~ls~V~pe~L~faf~~~~~~T~~~ega~L~Ie~vp~~~ 72 (117)
T PRK00564 21 NQAHKIEKVVVGIGERSGMDKSLFVSAFETFREESLVCKDAILDIVDEKVEL 72 (117)
T ss_pred cCCCeEEEEEEEEccccCcCHHHHHHHHHHHhcCCcccCCCEEEEEecCCEE
Confidence 3456799999988899999999999999999876535678899988766544
No 447
>TIGR02036 dsdC D-serine deaminase transcriptional activator. This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including E. coli, Vibrio cholerae, and Colwellia psychrerythraea.
Probab=51.88 E-value=47 Score=31.18 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=35.3
Q ss_pred hhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHH
Q psy2383 337 PNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~ 387 (391)
.+.-++..+++-..+. ..|+.....-|+++++.++.||+.|..++..+...
T Consensus 25 ~s~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~~ 78 (302)
T TIGR02036 25 FSLAAEELSLTPSAISHRINQLEEELGIQLFVRSHRKVELTHEGKRIYWALKSS 78 (302)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCceEEECCCceeECHhHHHHHHHHHHH
Confidence 3444455566544443 44555555779999999999999999998876543
No 448
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=51.86 E-value=56 Score=30.84 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=55.5
Q ss_pred ecCHhh-HHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE---cCCeEEeCcchHHHH
Q psy2383 314 KIEKKC-LIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR---NNKNIKPTSFGRYFL 381 (391)
Q Consensus 314 ~l~~~~-~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~---~~~~~~lT~~G~~~~ 381 (391)
.+++++ +....+-.++|..+=|..+.+.++.+.+.++....|..|...||+.. .-..++||..|-..+
T Consensus 10 ~l~~~D~rlLraiE~~mR~~e~VP~~~i~~~ar~~~~~~~~~L~~L~~l~lv~r~~~~y~Gy~lT~~GyD~L 81 (304)
T COG0478 10 KLSKEDFRLLRAIEGGMRSHEWVPLELIKKRARMDEEELLYRLKRLDKLKLVSRRTISYEGYQLTFSGYDAL 81 (304)
T ss_pred hcCHHHHHHHHHHHhcccccccccHHHHHHHcCCCHHHHHHHHHHHHhcCceeccCCcceeEEEEecchhHH
Confidence 467666 44556667788888899999999999988777788999999999998 568899999996543
No 449
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=51.79 E-value=2e+02 Score=26.61 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCC--CCCCHHHHHHHHHHHHHhCCC--CCCcEEEEeeCCCCC--C-HH
Q psy2383 46 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP--SLISDTGLDYLLKNIKKLLLF--KKNISITLEANPSTF--E-IE 118 (391)
Q Consensus 46 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtp--s~l~~~~l~~ll~~i~~~~~~--~~~~eit~e~~p~~l--~-~e 118 (391)
+++.++.+.+-|+... .+ +.+.|.++|+.. .-...+....+.+.+++..+. ..++.+.+|..+..+ + .+
T Consensus 89 r~~~~~~~~~~i~~a~-~l---G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~ 164 (279)
T TIGR00542 89 RQQGLEIMEKAIQLAR-DL---GIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISK 164 (279)
T ss_pred HHHHHHHHHHHHHHHH-Hh---CCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHH
Confidence 3444445544444332 22 345565665432 112344555565555554332 235788899743322 3 45
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceE-eEe----cCCC-CCCHHHHHHHHHHH
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL-DLI----YALP-NQTLSELMLDLNYA 192 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~-dlI----~GlP-gqt~e~~~~~l~~~ 192 (391)
.++.+++.|-..+.+-+...+- ...+ .+. .+.++.....+..+++ |.. -.+| |+-.-+|...++.+
T Consensus 165 ~~~li~~v~~~~v~~~~D~~h~---~~~~--~~~---~~~i~~~~~~i~~vHikD~~~~~~~~~p~G~G~id~~~~~~aL 236 (279)
T TIGR00542 165 WLKWDHYLNSPWFTLYPDIGNL---SAWD--NDV---QMELQLGIDKIVAIHLKDTKPGQFKDVPFGEGCVDFERCFKTL 236 (279)
T ss_pred HHHHHHHcCCCceEEEeCcChh---hhcc--CCH---HHHHHHhhhhEEEEEeCCCCCCccCCcCCCCCccCHHHHHHHH
Confidence 6667777777777776666642 1122 232 2334333333322333 221 1234 88888999999999
Q ss_pred HhcCCCe
Q psy2383 193 IQYSPPH 199 (391)
Q Consensus 193 ~~l~~~~ 199 (391)
.+.+.+.
T Consensus 237 ~~~gy~G 243 (279)
T TIGR00542 237 KQLNYRG 243 (279)
T ss_pred HHhCCce
Confidence 9999874
No 450
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=51.65 E-value=71 Score=28.62 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=37.1
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcch
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFG 377 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G 377 (391)
+..+.++...|...+.+...++.|.++|++...++.+.+.+.-
T Consensus 185 lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 227 (235)
T PRK11161 185 MTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENND 227 (235)
T ss_pred ccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCHH
Confidence 5567788888988888888999999999999999999998643
No 451
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=51.38 E-value=16 Score=38.42 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHhh-cccceEeE----ecCCCCC
Q psy2383 147 GRTHDSKQAKYAIEIAKQY-FNNFNLDL----IYALPNQ 180 (391)
Q Consensus 147 ~R~~~~~~~~~~i~~~~~~-~~~v~~dl----I~GlPgq 180 (391)
+|-.+.++...||+.+++. +. +-.|. ||+||||
T Consensus 641 tKYGs~~dL~~AikALH~~Giq-viaDwVpdQiYnLpg~ 678 (809)
T PF02324_consen 641 TKYGSVEDLRNAIKALHAAGIQ-VIADWVPDQIYNLPGK 678 (809)
T ss_dssp BTTB-HHHHHHHHHHHHHTT-E-EEEEE-TSEE---SEE
T ss_pred CCCCCHHHHHHHHHHHHHcCcc-hhhhhchHhhhCCCCc
Confidence 3556999999999999999 65 55554 8999986
No 452
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=51.35 E-value=48 Score=30.45 Aligned_cols=120 Identities=7% Similarity=0.008 Sum_probs=81.3
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
|+.-|.-..+.+.++|+.-+-++ +-.+-..+|.+ .+.+++.+.++.+.+. +| +.+|+=-|+ |.++..+
T Consensus 14 p~~~D~~SAr~~e~~Gf~ai~~s----g~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iP-v~vD~d~Gy-G~~~~~v 87 (238)
T PF13714_consen 14 PNVWDALSARLAERAGFDAIATS----GAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIP-VIVDADTGY-GNDPENV 87 (238)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEH----HHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSE-EEEE-TTTS-SSSHHHH
T ss_pred CCCcCHHHHHHHHHcCCCEEEec----hHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCc-EEEEccccc-CchhHHH
Confidence 44457777788888899887654 12222334544 3788999999888887 77 999999999 8899999
Q ss_pred HHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
.++++.+.+.|+.-|.+=-- .-| +... .+.+.++..+....+.+...+.+|.
T Consensus 88 ~~tv~~~~~aG~agi~IEDq--~~~---~~~~--~l~~~ee~~~kI~Aa~~a~~~~~~~ 139 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQ--RCG---HGGK--QLVSPEEMVAKIRAAVDARRDPDFV 139 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESB--STT---TSTT---B--HHHHHHHHHHHHHHHSSTTSE
T ss_pred HHHHHHHHHcCCcEEEeecc--ccC---CCCC--ceeCHHHHHHHHHHHHHhccCCeEE
Confidence 99999999999988866554 111 1111 2446677777788888888777754
No 453
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=50.94 E-value=2.6e+02 Score=28.66 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHH--------
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEK-------- 119 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~-------- 119 (391)
..+..|++.+..... ....+..+.+-.|.|..++++.+ +.+++. ++. .+..+|.+++++.
T Consensus 235 ~~L~~Ll~~i~~~f~--~~~~~~EiTvE~grPd~it~e~L----~~Lk~~-Gv~-----RISIGvQS~~d~vLk~igR~h 302 (488)
T PRK08207 235 EELERLLEEIYENFP--DVKNVKEFTVEAGRPDTITEEKL----EVLKKY-GVD-----RISINPQTMNDETLKAIGRHH 302 (488)
T ss_pred HHHHHHHHHHHHhcc--ccCCceEEEEEcCCCCCCCHHHH----HHHHhc-CCC-----eEEEcCCcCCHHHHHHhCCCC
Confidence 445555555543211 11235567777788988887554 444432 321 3344455555544
Q ss_pred --------HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC
Q psy2383 120 --------FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN 179 (391)
Q Consensus 120 --------l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg 179 (391)
++.++++|++.|++.+=.+- .+.+.+++.+.++.+.+. .+.+++....=.||
T Consensus 303 t~e~v~~ai~~ar~~Gf~~In~DLI~GL--------PgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 303 TVEDIIEKFHLAREMGFDNINMDLIIGL--------PGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEEEeCC--------CCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 44556678876665432211 257889999999999999 87788776665555
No 454
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=50.89 E-value=2.3e+02 Score=27.00 Aligned_cols=77 Identities=4% Similarity=-0.090 Sum_probs=39.5
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.++.+.+.||+-|.++=-|+.-. ..|.++-.+.++.+.+... =.+-+|+|.-..+.++..+..+.+.+.|+|
T Consensus 34 lv~~li~~Gv~Gi~v~GstGE~~-------~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 34 LVERLIAAGVDGILTMGTFGECA-------TLTWEEKQAFVATVVETVA-GRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHHHcCCCEEEECcccccch-------hCCHHHHHHHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 34444556777666532111110 1244455555555544411 113356666556666666677777777777
Q ss_pred eEEEe
Q psy2383 199 HLSLY 203 (391)
Q Consensus 199 ~is~y 203 (391)
.+.+.
T Consensus 106 ~vlv~ 110 (309)
T cd00952 106 GTMLG 110 (309)
T ss_pred EEEEC
Confidence 66544
No 455
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=50.64 E-value=2.7e+02 Score=27.88 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=72.4
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYA 192 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~ 192 (391)
.+..++.+.++|+.+|.+=+-+.+-.+...++... ..+.+.++++.+++. .. +..+..-.. .-.++.+.+.++.+
T Consensus 78 ~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~-~~~~~Ed~~-rt~~~~l~~~~~~~ 155 (409)
T COG0119 78 IKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLE-VRFSAEDAT-RTDPEFLAEVVKAA 155 (409)
T ss_pred HHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeccc-cCCHHHHHHHHHHH
Confidence 34578899999999999888777777767776332 344466677777777 54 555554444 66788888999999
Q ss_pred HhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 193 IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 193 ~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
.+.|++.|.+ |.|. ....+.+..++.......+.
T Consensus 156 ~~~ga~~i~l------~DTv-------G~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 156 IEAGADRINL------PDTV-------GVATPNEVADIIEALKANVP 189 (409)
T ss_pred HHcCCcEEEE------CCCc-------CccCHHHHHHHHHHHHHhCC
Confidence 9888887754 3332 12334555666655555543
No 456
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=50.53 E-value=43 Score=28.86 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=38.6
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
+..++++...|...+.+...|+.|.++|++....++|.+.+.-.+
T Consensus 144 ~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I~d~~~L 188 (193)
T TIGR03697 144 LSHQAIAEAIGSTRVTITRLLGDLRKKKLISIHKKKITVHDPIAL 188 (193)
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHH
Confidence 467788888999888889999999999999999999998865443
No 457
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=50.44 E-value=1.3e+02 Score=27.37 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=65.2
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC----CH-------HHHHHhHHCCCCEEEEecCC
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF----EI-------EKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l----~~-------e~l~~l~~~Gv~risiGvqS 137 (391)
...+-.||=|||+ -++..+.+.. ++.+..-++|..= ++ +.++..+++|+..|.+|.=+
T Consensus 28 C~~La~GG~TPSy-------G~~k~a~~~~----~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt 96 (241)
T COG3142 28 CDALAEGGLTPSY-------GVIKEAVELS----KIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALT 96 (241)
T ss_pred hhccccCCCCCCH-------HHHHHHHhhc----CCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeec
Confidence 3566788989986 2233333332 3567777777643 33 35666778999999999877
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 138 ~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
-|.++ +.+...+.++.+... . +.++.-|-. +.+ -.+.|+.+.++++.+|-.
T Consensus 97 ~dg~i--------D~~~le~Li~aA~gL-~-vTFHrAFD~---~~d-~~~ale~li~~Gv~RILT 147 (241)
T COG3142 97 ADGNI--------DMPRLEKLIEAAGGL-G-VTFHRAFDE---CPD-PLEALEQLIELGVERILT 147 (241)
T ss_pred CCCcc--------CHHHHHHHHHHccCC-c-eeeehhhhh---cCC-HHHHHHHHHHCCCcEEec
Confidence 66543 334444455444432 1 223222221 111 567889999999998833
No 458
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.39 E-value=2.2e+02 Score=26.69 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=66.5
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.+++.|.| ...|+.++-.++++...+... ....+-+-+...++ .-+..+..+++|++-+.+-.=.+
T Consensus 35 Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~--~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y----- 107 (288)
T cd00954 35 GVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK--GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFY----- 107 (288)
T ss_pred CCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-----
Confidence 57888888843 555788888888887776532 23444444433222 24566677888999887654322
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH-HHHHHHHHh
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL-MLDLNYAIQ 194 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~-~~~l~~~~~ 194 (391)
.+ .+.+++.+-.+.+.++.+.+-+ ++|..|.-|--.+ .+++..+.+
T Consensus 108 ---~~-~~~~~i~~~~~~v~~a~~~lpi-~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 108 ---YK-FSFEEIKDYYREIIAAAASLPM-IIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred ---CC-CCHHHHHHHHHHHHHhcCCCCE-EEEeCccccCCCCCHHHHHHHhc
Confidence 11 3456666666666555312444 5688886542222 234444444
No 459
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=50.31 E-value=1.5e+02 Score=30.18 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=76.4
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHh-
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNIL- 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l- 146 (391)
+++.|.+-- +- -.+....++++.|++.++ ++.+-+ -+..|.+..+.|.++|++-|.+|+-+++--..+..
T Consensus 237 GVd~i~~D~-a~--g~~~~~~~~i~~i~~~~~---~~~vi~---g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~ 307 (475)
T TIGR01303 237 GVDVLVIDT-AH--GHQVKMISAIKAVRALDL---GVPIVA---GNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMT 307 (475)
T ss_pred CCCEEEEeC-CC--CCcHHHHHHHHHHHHHCC---CCeEEE---eccCCHHHHHHHHHhCCCEEEECCcCCccccCcccc
Confidence 466666622 21 345678888899988763 345544 23469999999999999999999988776655433
Q ss_pred --CCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 147 --GRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 147 --~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
+++ +..-+.++.+.+++. ++ +-.|= |+ .+. .++-+++.+|.+.+-+-.
T Consensus 308 ~~g~~-~~~a~~~~~~~~~~~~~~-viadG--gi--~~~----~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 308 GVGRP-QFSAVLECAAEARKLGGH-VWADG--GV--RHP----RDVALALAAGASNVMVGS 358 (475)
T ss_pred CCCCc-hHHHHHHHHHHHHHcCCc-EEEeC--CC--CCH----HHHHHHHHcCCCEEeech
Confidence 222 344566677667766 44 43443 22 333 356677789998876544
No 460
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=50.28 E-value=52 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=31.9
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
...+.+.+.+++.-+.+-..+...|+.|.+.|++.++
T Consensus 39 ~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Re 75 (126)
T COG3355 39 ENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVERE 75 (126)
T ss_pred hcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeee
Confidence 4567889999998888777789999999999999875
No 461
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=50.19 E-value=34 Score=31.42 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=37.2
Q ss_pred CCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 66 NRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 66 ~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
.-+.+.||+-|. .+.++++++.+.+. ..+.+-..|.+++ ++.|+++|+++|++|...
T Consensus 166 eAGAD~ifi~~~----~~~~~i~~~~~~~~--------~Pl~v~~~~~~~~---~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 166 EAGADMIFIPGL----QSEEEIERIVKAVD--------GPLNVNPGPGTLS---AEELAELGVKRVSYGNSL 222 (238)
T ss_dssp HTT-SEEEETTS----SSHHHHHHHHHHHS--------SEEEEETTSSSS----HHHHHHTTESEEEETSHH
T ss_pred HcCCCEEEeCCC----CCHHHHHHHHHhcC--------CCEEEEcCCCCCC---HHHHHHCCCcEEEEcHHH
Confidence 356888997553 46667777766662 2455554566554 556788899999999754
No 462
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=50.15 E-value=77 Score=26.25 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=34.3
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~ 375 (391)
++.+.+.+.+|++...+.+.+..|..+||++... +.+.|+.
T Consensus 26 ~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~ 69 (141)
T PRK11014 26 TSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGK 69 (141)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecC
Confidence 6778899999999878899999999999998664 4677764
No 463
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=49.94 E-value=48 Score=30.91 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=35.4
Q ss_pred ChhHHHHHhCCCHHHHHHH---HHHHHHCCCeEEcCCeEEeCcchHHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIESK---LKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~---l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~ 386 (391)
+.+.-+++.++....+... |+.-...-|+.+++.+++||+.|..++..+..
T Consensus 22 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~r~l~lT~~G~~l~~~~~~ 75 (297)
T PRK11139 22 SFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRRNRSLLLTEEGQRYFLDIRE 75 (297)
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHhCchheEecCCceeECHhHHHHHHHHHH
Confidence 3445556666665555444 44444467899999999999999999887643
No 464
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=49.89 E-value=36 Score=32.34 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=41.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|.+-- ++++.++++++.++. .+.+|+.. .++.+.++.+++.|++.||+|-=+
T Consensus 228 gaDiI~LDn-----~s~e~~~~av~~~~~--------~~~ieaSG-GI~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 228 GADIIMLDN-----FTTEQMREAVKRTNG--------RALLEVSG-NVTLETLREFAETGVDFISVGALT 283 (296)
T ss_pred CCCEEEeCC-----CChHHHHHHHHhhcC--------CeEEEEEC-CCCHHHHHHHHhcCCCEEEeCccc
Confidence 456676632 356778887775531 45677765 599999999999999999999533
No 465
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=49.79 E-value=1.8e+02 Score=25.92 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=51.6
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHH
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYA 192 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~ 192 (391)
+..+.++++|++.|.+.+=+-.....+ =+.+ ...+.+.+.++.+++. ...+.+++=.|...+ ++..+-++.+
T Consensus 71 ~aa~~~~~aG~d~ieln~g~p~~~~~~-~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~--~~~~~~~~~l 147 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTK-GGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE--EETLELAKAL 147 (231)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHHHHhC-CCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc--hHHHHHHHHH
Confidence 355566677988888765443222211 0000 2556677788888777 222666665443211 5777788888
Q ss_pred HhcCCCeEEEecc
Q psy2383 193 IQYSPPHLSLYSL 205 (391)
Q Consensus 193 ~~l~~~~is~y~l 205 (391)
.+.+++.|++..-
T Consensus 148 ~~~Gvd~i~v~~~ 160 (231)
T cd02801 148 EDAGASALTVHGR 160 (231)
T ss_pred HHhCCCEEEECCC
Confidence 8899999987653
No 466
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.68 E-value=34 Score=32.27 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=44.1
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~ 140 (391)
+++.|.+-- ++++.+++....++.. ..+|+.. .++.+.+..+++.||+.||+|-=+.+-
T Consensus 213 gaDiImLDn-----~s~e~l~~av~~~~~~--------~~leaSG-gI~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 213 GVDTIMLDN-----FSLDDLREGVELVDGR--------AIVEASG-NVNLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred CCCEEEECC-----CCHHHHHHHHHHhCCC--------eEEEEEC-CCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 467777632 4788888888876532 3577765 599999999999999999999655443
No 467
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=49.65 E-value=2.5e+02 Score=27.18 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCC-------C--
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTF-------E-- 116 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l-------~-- 116 (391)
...+..|++.|..... .+. .+.+- .+|..++++.++. +++. ++. .+.+.+++ ++..+ +
T Consensus 67 ~~~l~~ll~~i~~~~~--~~~---eitiE-~nP~~~~~e~l~~----l~~~-Gvn-RiSiGvQS~~~~~L~~lgR~~~~~ 134 (350)
T PRK08446 67 AKFYEPIFEIISPYLS--KDC---EITTE-ANPNSATKAWLKG----MKNL-GVN-RISFGVQSFNEDKLKFLGRIHSQK 134 (350)
T ss_pred HHHHHHHHHHHHHhcC--CCc---eEEEE-eCCCCCCHHHHHH----HHHc-CCC-EEEEecccCCHHHHHHcCCCCCHH
Confidence 4566777777765411 111 22222 2677777655444 3332 221 24444443 33221 1
Q ss_pred --HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC----------C-H
Q psy2383 117 --IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ----------T-L 182 (391)
Q Consensus 117 --~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq----------t-~ 182 (391)
.+.++.++++|+..|++-+=-.= .++|.+++.+.++.+.+. .+.+++.-+.=.||. + .
T Consensus 135 ~~~~ai~~lr~~g~~~v~iDli~Gl--------Pgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~ 206 (350)
T PRK08446 135 QIIKAIENAKKAGFENISIDLIYDT--------PLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDE 206 (350)
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCC--------CCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHH
Confidence 23566677788877665331111 247889999999999988 766776554444441 2 2
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 183 SELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+.+....+.+.+.|-.+..+..+.
T Consensus 207 ~~~~~~~~~l~~~Gy~~yeis~fa 230 (350)
T PRK08446 207 NLAKFFIEQLEELGFKQYEISNFG 230 (350)
T ss_pred HHHHHHHHHHHHCCCcEEEeehhh
Confidence 333445566667787777776654
No 468
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=49.46 E-value=33 Score=30.99 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=38.2
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGR 378 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~ 378 (391)
|+--..++-..+.+.||++..-++..|..|...|||+... ..+.+++-..
T Consensus 34 l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~p~rG~~V~~~~~ 84 (230)
T COG1802 34 LAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIEPNRGAFVAPLSL 84 (230)
T ss_pred CCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEecCCCCCeeCCCCH
Confidence 4434458888899999998767899999999999999874 3555554433
No 469
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=49.43 E-value=2.1e+02 Score=26.34 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=28.6
Q ss_pred CeeEEEEeCCCCCC----C-CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCC
Q psy2383 68 KIHTIFIGGGTPSL----I-SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGI 128 (391)
Q Consensus 68 ~~~~i~~gGGtps~----l-~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv 128 (391)
+.+-|-+|++...- . ..+.++++...++..-.. .+..+++ ++.+.+.++..-++|.
T Consensus 37 GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~-~~~piSI----DT~~~~v~~aaL~~g~ 97 (258)
T cd00423 37 GADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGE-PDVPISV----DTFNAEVAEAALKAGA 97 (258)
T ss_pred CCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc-CCCeEEE----eCCcHHHHHHHHHhCC
Confidence 46778888865311 1 123444444444432111 1345665 3566677776666664
No 470
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=49.37 E-value=55 Score=29.90 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=33.5
Q ss_pred hhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 337 PNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 337 ~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
...-++..+++...+- +.|+.-...-|+.+++.+++||+.|..+....-
T Consensus 14 ~~~AA~~L~isqsavS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 65 (279)
T TIGR03339 14 FTRAAERLGLSQPTVTDQVRKLEERYGVELFHRNGRRLELTDAGHRLLPIVE 65 (279)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhCCccEEEcCCeEEEChhHHHHHHHHH
Confidence 3444455555443343 445555557799999999999999999887653
No 471
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=49.29 E-value=2.3e+02 Score=26.52 Aligned_cols=134 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
.+.++...+++-..+++-|++.| |....|+.++-.++++.+.+..+- +-+.+.++-..-+-+..+..+++|++-+
T Consensus 19 ~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~---vi~gvg~~~~~~ai~~a~~a~~~Gad~v 95 (279)
T cd00953 19 KEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK---VIFQVGSLNLEESIELARAAKSFGIYAI 95 (279)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC---EEEEeCcCCHHHHHHHHHHHHHcCCCEE
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCC-HHHHHHHHHHHHhcCCCeEEE
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT-LSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt-~e~~~~~l~~~~~l~~~~is~ 202 (391)
.+-.-.+ -+..+.+.+.+-.+.+.+ .+-+ ++|..|..| .+-=.+++..+.+..+.-+.+
T Consensus 96 ~v~~P~y--------~~~~~~~~i~~yf~~v~~---~lpv-~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgi 155 (279)
T cd00953 96 ASLPPYY--------FPGIPEEWLIKYFTDISS---PYPT-FIYNYPKATGYDINARMAKEIKKAGGDIIGV 155 (279)
T ss_pred EEeCCcC--------CCCCCHHHHHHHHHHHHh---cCCE-EEEeCccccCCCCCHHHHHHHHhcCCCEEEE
No 472
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=49.23 E-value=92 Score=23.13 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.5
Q ss_pred CChhHHHHHhCCCHHHHHHHHHH-HHHCCCeEEcCCeEEeCcchHHHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKN-AEKLGLLKRNNKNIKPTSFGRYFL 381 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~-l~~~gl~~~~~~~~~lT~~G~~~~ 381 (391)
+-++.++..-|.+.+.+....+. |++.||+.++...=.+|++|+.++
T Consensus 26 vGl~tlA~~l~ed~~Tie~v~EPyLiq~G~I~RT~rGR~~T~~a~~~l 73 (76)
T PF05491_consen 26 VGLDTLAAALGEDKETIEDVIEPYLIQIGFIQRTPRGRVATPKAYEHL 73 (76)
T ss_dssp B-HHHHHHHTTS-HHHHHHTTHHHHHHTTSEEEETTEEEE-HHHHHHT
T ss_pred eeHHHHHHHHCCCHhHHHHHhhHHHHHhhhHhhCccHHHhHHHHHHHh
Confidence 56677777777766556555554 788999999988879999998654
No 473
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.20 E-value=1.6e+02 Score=27.20 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=54.4
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC---
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN--- 179 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg--- 179 (391)
.++.+...+. +.+.++.+.++|+.++.+|-..+ .+.+.+.+.++...+. +. +++|+=-|..|
T Consensus 75 ~pv~~gGGi~--s~~d~~~l~~~G~~~vvigs~~~-----------~~~~~~~~~~~~~~~~~i~-vsiD~k~g~~~~~~ 140 (258)
T PRK01033 75 MPLCYGGGIK--TLEQAKKIFSLGVEKVSINTAAL-----------EDPDLITEAAERFGSQSVV-VSIDVKKNLGGKFD 140 (258)
T ss_pred CCEEECCCCC--CHHHHHHHHHCCCCEEEEChHHh-----------cCHHHHHHHHHHhCCCcEE-EEEEEecCCCCcEE
Confidence 4566665554 45677777889999999993222 1233444555444323 43 77786544211
Q ss_pred --------CCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 180 --------QTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 180 --------qt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
.+..+..+-++.+.+++++.+.+....
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~ 175 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSID 175 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccC
Confidence 233445666777889999999777654
No 474
>PF11313 DUF3116: Protein of unknown function (DUF3116); InterPro: IPR021464 This family of proteins with unknown function appears to be restricted to Bacillales.
Probab=49.11 E-value=38 Score=25.68 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCeEEc----CCeEEeCcchHHHHHHHH
Q psy2383 350 IIESKLKNAEKLGLLKRN----NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 350 ~~~~~l~~l~~~gl~~~~----~~~~~lT~~G~~~~~~i~ 385 (391)
++.-.+=.|+..|+|.++ +.++.+|++|..+++.+-
T Consensus 43 elL~~vYWLE~ngyI~R~~~~~~~rY~~T~kG~~ll~~~~ 82 (85)
T PF11313_consen 43 ELLYTVYWLEENGYIFRDNNNNEKRYSLTEKGKELLAEIK 82 (85)
T ss_pred HHHHHHHHHhhcCeeEeecCCCcceeEEeccHHHHHHHHH
Confidence 345567889999999876 478999999999988764
No 475
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=48.68 E-value=2.2e+02 Score=26.31 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=33.7
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GI 128 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv 128 (391)
+.+-|-+|++.+..-..+.+.+++..+++.. ++.+++. +.+.+.++.--+. |.
T Consensus 39 GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~----~~piSID----T~~~~v~e~aL~~~~G~ 93 (252)
T cd00740 39 GAQILDLNVDYGGLDGVSAMKWLLNLLATEP----TVPLMLD----STNWEVIEAGLKCCQGK 93 (252)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCcEEee----CCcHHHHHHHHhhCCCC
Confidence 5788888887543334567888888887653 3456664 5566666654443 64
No 476
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=48.65 E-value=38 Score=32.58 Aligned_cols=86 Identities=7% Similarity=0.094 Sum_probs=54.2
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc-------cceEeEecCCCC--CCHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN-------NFNLDLIYALPN--QTLSEL 185 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~-------~v~~dlI~GlPg--qt~e~~ 185 (391)
++..++.++++|++.|.=.+--... |..=+.+++.+.-+.+.++ +. .|+=|+.+|.|. +-.+.+
T Consensus 12 D~v~l~~irQ~Gv~gIV~aLh~iP~------g~~W~~~~I~~~k~~ie~~Gl~~~vvESvPvhedIK~g~~~rd~~Ieny 85 (362)
T COG1312 12 DPVTLEDIRQAGVKGVVTALHHIPA------GEVWPVEEILKRKEEIESAGLTWSVVESVPVHEDIKLGTPTRDRYIENY 85 (362)
T ss_pred CCccHHHHHHhCccceeccCCCCCC------CCcCcHHHHHHHHHHHHHcCceEEeecCCCHHHHHHhcCCcHHHHHHHH
Confidence 4445666777788777654432222 3334566666665556555 31 134466777775 357788
Q ss_pred HHHHHHHHhcCCCeEEEeccccc
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
+++++.+.+.|++.| +|.++|.
T Consensus 86 ~~tirnLa~~GI~vv-CYNfMpv 107 (362)
T COG1312 86 KQTIRNLARAGIKVV-CYNFMPV 107 (362)
T ss_pred HHHHHHHHhcCCcEE-Eeccccc
Confidence 889999999998855 8888843
No 477
>PRK06247 pyruvate kinase; Provisional
Probab=48.32 E-value=80 Score=32.17 Aligned_cols=64 Identities=8% Similarity=0.115 Sum_probs=40.9
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+.|-+...|.+-+.+.|+.|.++|+|-+-+..=.. +.++..+.++.+|++ -.+..+-++.-+||
T Consensus 7 tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg------------~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~G 72 (476)
T PRK06247 7 VKILATLGPASSSEDMIRKLVEAGADVFRLNFSHG------------DHDDHRELYKRIREVEDETGRPIGILADLQG 72 (476)
T ss_pred ceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCC------------CHHHHHHHHHHHHHHHHHcCCCeeEEEeCCC
Confidence 56777778998899999999999998655554333 344445555555544 11133445555555
No 478
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=48.31 E-value=96 Score=27.40 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=34.6
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGR 378 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~ 378 (391)
++-..+.+.||++-..+...|..|+..|||+.. +..+.+++...
T Consensus 35 L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~~~~~G~~V~~~~~ 79 (212)
T TIGR03338 35 LNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNRGVFVREISL 79 (212)
T ss_pred ecHHHHHHHhCCChHHHHHHHHHHHHCCCEEEecCCCeEEecCCH
Confidence 555678889999877889999999999999865 45566665444
No 479
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=48.21 E-value=48 Score=31.25 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=35.6
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+...-+++.+++-..+. ..|+.-...-|+.+++.++.||+.|..++..+-
T Consensus 23 s~s~AA~~L~iSQpavS~~I~~LE~~lg~~LF~R~~r~~~lT~~G~~l~~~a~ 75 (312)
T PRK10341 23 SIGSAAKELGLTQPAVSKIINDIEDYFGVELIVRKNTGVTLTPAGQVLLSRSE 75 (312)
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHhCCeEEEEcCCCceEChhHHHHHHHHH
Confidence 34555566666654444 445555556799999999999999999998653
No 480
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=48.15 E-value=2.4e+02 Score=26.56 Aligned_cols=78 Identities=14% Similarity=-0.019 Sum_probs=41.4
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.++.+.+.|++.|.++=-|+.-. ..|.++-.+.++.+.+... =.+.+|.|.-..+.++..+-.+.+.++|+|
T Consensus 26 lv~~~~~~Gv~gi~v~GstGE~~-------~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 26 LIEFQIEGGSHAISVGGTSGEPG-------SLTLEERKQAIENAIDQIA-GRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred HHHHHHHcCCCEEEECccCcccc-------cCCHHHHHHHHHHHHHHhC-CCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 44444556777666542221111 1244555555555544411 124456777666666666777777777777
Q ss_pred eEEEec
Q psy2383 199 HLSLYS 204 (391)
Q Consensus 199 ~is~y~ 204 (391)
.+.+.+
T Consensus 98 ~v~v~p 103 (294)
T TIGR02313 98 AAMVIV 103 (294)
T ss_pred EEEEcC
Confidence 665443
No 481
>PRK05638 threonine synthase; Validated
Probab=48.04 E-value=54 Score=33.05 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=38.2
Q ss_pred CCCChhHHHHHhC--CCHHHHHHHHHHHHHCCCeEEc---C--CeEEeCcchHHHHHH
Q psy2383 333 DGFSPNLFFERTG--INIKIIESKLKNAEKLGLLKRN---N--KNIKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~~~~~~~--~~~~~~~~~l~~l~~~gl~~~~---~--~~~~lT~~G~~~~~~ 383 (391)
......++.+.++ .+...+.+.|+.|++.|||+.. + -.++||++|+.+...
T Consensus 383 ~~~~~~el~~~l~~~~s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l~~ 440 (442)
T PRK05638 383 REMYGYEIWKALGKPLKYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLLEN 440 (442)
T ss_pred CCccHHHHHHHHcccCCcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHHHh
Confidence 3455667778877 4445678999999999999753 2 237899999988765
No 482
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=47.93 E-value=57 Score=31.16 Aligned_cols=122 Identities=7% Similarity=0.046 Sum_probs=57.3
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCC-CCCCH-----HH---HHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYAL-PNQTL-----SE---LML 187 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~Gl-Pgqt~-----e~---~~~ 187 (391)
.+.++.+.+.|.|..--+..+ |+-.+.+-...++.+++.+ ++.+.+.-...+++|++|+ ||... ++ +.+
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKd-Dpyhr~~Wre~Yp~~el~~-l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~ 95 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKD-DPYHRSKWREPYPEEELAE-LKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKA 95 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT--TTTTTTTTS---HHHHHH-HHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCC-ChHHHhhhcccCCHHHHHH-HHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHH
Confidence 467778888888888877654 3333334444456665544 3333333122668888886 77764 34 445
Q ss_pred HHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q psy2383 188 DLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241 (391)
Q Consensus 188 ~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~ 241 (391)
-++.+.++|+.++.+.-=. .+++...............+..+...+.+.|.+.
T Consensus 96 K~~ql~~lGvr~FailfDD-i~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~~ 148 (306)
T PF07555_consen 96 KFDQLYDLGVRSFAILFDD-IDGDLWHCDKDDFNSLAQAQARLLNRVNKELIKK 148 (306)
T ss_dssp HHHHHHCTT--EEEEE-TS--SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCEEEEeecC-CCCccccccccccchHHHHHHHHHHHHHHHHhcc
Confidence 5667778899988776322 2222111111101122344556666665555543
No 483
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=47.71 E-value=76 Score=28.97 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCH
Q psy2383 83 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 83 ~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~ 140 (391)
+.+.+..++..+++. ++++|+=++| +.+.++.-++.|.++|.+--..+-+
T Consensus 108 ~~~~l~~~i~~l~~~-----gI~VSLFiDP---d~~qi~~A~~~GAd~VELhTG~Ya~ 157 (234)
T cd00003 108 QAEKLKPIIERLKDA-----GIRVSLFIDP---DPEQIEAAKEVGADRVELHTGPYAN 157 (234)
T ss_pred CHHHHHHHHHHHHHC-----CCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhc
Confidence 445666666666643 5788988888 5899999999999999987655544
No 484
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=47.71 E-value=6.9 Score=38.72 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=12.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEe--e-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCH
Q psy2383 76 GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLE--A-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDS 152 (391)
Q Consensus 76 GGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e--~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~ 152 (391)
-|+|.+++. ..|---+|..-.++ .+|+-+. + ..+.+...-++.|.+.||+.+++|.|+.|.+.+..+.+....
T Consensus 44 RGEPAi~dK--w~RA~~AL~~GaDL--ViELP~~~a~qsA~~FA~gaV~lL~~lgvd~l~FGsE~~~~~~l~~~a~~~~~ 119 (388)
T PF05636_consen 44 RGEPAIIDK--WTRAEMALKNGADL--VIELPVVYALQSAEYFARGAVSLLNALGVDYLSFGSESGDIEDLQKIAEILIE 119 (388)
T ss_dssp TSSB-SS-H--HHHHHHHHHHT-SE--EEE---G----------------------------------------------
T ss_pred CCCeeeCCH--HHHHHHHHHcCCCE--EEECCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 389999875 34555556553222 1222111 1 355567788999999999999999999999888887765433
Q ss_pred H--HHHHHHHH
Q psy2383 153 K--QAKYAIEI 161 (391)
Q Consensus 153 ~--~~~~~i~~ 161 (391)
+ ++.+.++.
T Consensus 120 ~~~~~~~~l~~ 130 (388)
T PF05636_consen 120 EPEEFKEALKE 130 (388)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 3 45555544
No 485
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.65 E-value=2.3e+02 Score=26.09 Aligned_cols=124 Identities=11% Similarity=0.037 Sum_probs=68.2
Q ss_pred CeeEEEEeCCCCC--CCCHHHHHHHHHHHHHhCCC--CCCcEEEEeeCCCCC--C-HHHHHHhHHCCCCEEEEecCCCCH
Q psy2383 68 KIHTIFIGGGTPS--LISDTGLDYLLKNIKKLLLF--KKNISITLEANPSTF--E-IEKFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 68 ~~~~i~~gGGtps--~l~~~~l~~ll~~i~~~~~~--~~~~eit~e~~p~~l--~-~e~l~~l~~~Gv~risiGvqS~~~ 140 (391)
+++.|.+.|++.. .-+.+.++++.+.+++..+. ..++.+.+|..+... + ++.++.+++.+-..+.+-+.+.+-
T Consensus 107 G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~ 186 (284)
T PRK13210 107 GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNL 186 (284)
T ss_pred CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCCceeEEecCChh
Confidence 4566666654321 11234445555554443222 235789999866543 2 456677777776667666555542
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEec-----------CC-CCCCHHHHHHHHHHHHhcCCCe
Q psy2383 141 KYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIY-----------AL-PNQTLSELMLDLNYAIQYSPPH 199 (391)
Q Consensus 141 ~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~-----------Gl-Pgqt~e~~~~~l~~~~~l~~~~ 199 (391)
...+ .+ ..+.++...+.+..+++.=.. .+ ||+..-+|.+.++.+.+.+.+.
T Consensus 187 ---~~~~--~~---~~~~l~~~~~~i~~vHikD~~~~~~~~~g~~~~~p~G~G~id~~~~~~~L~~~gy~G 249 (284)
T PRK13210 187 ---SAWG--ND---VWSELKLGIDHIAAIHLKDTYAVTETSKGQFRDVPFGEGCVDFVGIFKTLKELNYRG 249 (284)
T ss_pred ---hhcC--CC---HHHHHHHhcCeEEEEEeccccccccCCCCccccccCCCcccCHHHHHHHHHHcCCCc
Confidence 1222 23 334444444443224331111 13 4888889999999999998873
No 486
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=47.64 E-value=1.9e+02 Score=28.58 Aligned_cols=82 Identities=9% Similarity=0.072 Sum_probs=56.2
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCC--CCCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHHHHHHHHH
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGR--THDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELMLDLNYAI 193 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R--~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~~~l~~~~ 193 (391)
+.++.+.++|++-|.+.+=+-+-..++.++- .++.+.+.+.++.+++. ++ +++=|+- ...++.+..+.+.
T Consensus 131 ~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iP-----v~vKLsP-n~t~i~~ia~aa~ 204 (385)
T PLN02495 131 EIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVP-----VWAKMTP-NITDITQPARVAL 204 (385)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCc-----eEEEeCC-ChhhHHHHHHHHH
Confidence 4666777889999999986655433333321 36778888888888776 44 3444432 3345888888899
Q ss_pred hcCCCeEEEecc
Q psy2383 194 QYSPPHLSLYSL 205 (391)
Q Consensus 194 ~l~~~~is~y~l 205 (391)
+.+++-|++..-
T Consensus 205 ~~Gadgi~liNT 216 (385)
T PLN02495 205 KSGCEGVAAINT 216 (385)
T ss_pred HhCCCEEEEecc
Confidence 999999988763
No 487
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.21 E-value=58 Score=29.95 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=65.8
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC-CHHHHHH
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF-NNKYLNI 145 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~-~~~~l~~ 145 (391)
.+++.+|+-+=+.+.-....-..+++.|.+.. .++++- ..-=+.+.++.+-++|+.|+.+|-.++ |++.++.
T Consensus 42 ~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-----~~v~vG--GGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~ 114 (241)
T PRK14114 42 EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-----EHIQIG--GGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKF 114 (241)
T ss_pred CCCCEEEEEECCCcccCCcchHHHHHHHHhhc-----CcEEEe--cCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHH
Confidence 35677777664433322222244555555432 133433 333378899999999999999998887 5555554
Q ss_pred hCCCCCHHHHHHHHHHHHhhcccceEeEecC------CCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCC
Q psy2383 146 LGRTHDSKQAKYAIEIAKQYFNNFNLDLIYA------LPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNT 211 (391)
Q Consensus 146 l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~G------lPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT 211 (391)
+.+ +. +.+ -+++|.-=| .-.+|.-+..+-++.+.++++..+-+-... ..||
T Consensus 115 ~~~-~~------------~~i-vvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~-rdGt 171 (241)
T PRK14114 115 LKE-ID------------VEP-VFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIE-KDGT 171 (241)
T ss_pred HHH-hC------------CCE-EEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeec-hhhc
Confidence 421 10 112 256665222 111233344555666677777776443332 3444
No 488
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=47.14 E-value=1.4e+02 Score=27.97 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~ 125 (391)
.++..+.+++... +++.|++-+ |-..+.|..+.+++..+++.++ +.++.+-++ ...-....+..+ +
T Consensus 149 ~~~~~~~~~~~~~-------Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~i~~H~Hnd~GlA~AN~laA~-~ 216 (274)
T cd07938 149 ERVAEVAERLLDL-------GCDEISLGD-TIGVATPAQVRRLLEAVLERFP---DEKLALHFHDTRGQALANILAAL-E 216 (274)
T ss_pred HHHHHHHHHHHHc-------CCCEEEECC-CCCccCHHHHHHHHHHHHHHCC---CCeEEEEECCCCChHHHHHHHHH-H
Confidence 4555555555432 468888877 6677889999999999998764 345555553 322244455555 6
Q ss_pred CCCCEEEEecC
Q psy2383 126 IGINRLSIGIQ 136 (391)
Q Consensus 126 ~Gv~risiGvq 136 (391)
+|+++|...+-
T Consensus 217 aGa~~id~t~~ 227 (274)
T cd07938 217 AGVRRFDSSVG 227 (274)
T ss_pred hCCCEEEEecc
Confidence 79998886554
No 489
>PHA00738 putative HTH transcription regulator
Probab=46.91 E-value=83 Score=25.05 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred HHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 323 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 323 e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
..++..|+..++.....+.+.++.+...+..-|..|+++|||...
T Consensus 15 r~IL~lL~~~e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~sr 59 (108)
T PHA00738 15 RKILELIAENYILSASLISHTLLLSYTTVLRHLKILNEQGYIELY 59 (108)
T ss_pred HHHHHHHHHcCCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEE
Confidence 334444544345778889999999888888999999999999754
No 490
>KOG2900|consensus
Probab=46.83 E-value=92 Score=28.75 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=65.2
Q ss_pred HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 120 l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.+..++.|-+|+.+| ...++..||..+...+.+.|+.++.. .. +++-| |+-.| +.+.+++-.
T Consensus 126 Ak~AK~~GSTRFCmG-----aAWRD~~GRk~~fk~IlE~ikevr~MgmE-vCvTL--GMv~~---------qQAkeLKdA 188 (380)
T KOG2900|consen 126 AKEAKRNGSTRFCMG-----AAWRDMKGRKSAFKRILEMIKEVRDMGME-VCVTL--GMVDQ---------QQAKELKDA 188 (380)
T ss_pred HHHHHhcCCceeecc-----hhhhhhccchhHHHHHHHHHHHHHcCCce-eeeee--ccccH---------HHHHHHHhc
Confidence 344566799999999 46788899999999999999999999 65 77755 54322 344455544
Q ss_pred eEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 199 HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 199 ~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
.++.|.-.+.-.-..+.+.. .--..|+.. ...+.+.++|...
T Consensus 189 GLTAYNHNlDTSREyYskvI-tTRtYDdRL----~Ti~nvr~aGikv 230 (380)
T KOG2900|consen 189 GLTAYNHNLDTSREYYSKVI-TTRTYDDRL----QTIKNVREAGIKV 230 (380)
T ss_pred cceecccCccchhhhhcccc-eecchHHHH----HHHHHHHHhccee
Confidence 56677655543333333322 112223322 2345667777664
No 491
>COG2469 Uncharacterized conserved protein [Function unknown]
Probab=46.72 E-value=35 Score=31.73 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=59.9
Q ss_pred hHHHHHHHhcCCCcceeeecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE--cCCeEEe
Q psy2383 296 PNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR--NNKNIKP 373 (391)
Q Consensus 296 ~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~--~~~~~~l 373 (391)
+..|++.+... .......+++.|. +.++ -+..|++...+....|.+-.++....+.|++.||++. ....+.|
T Consensus 196 l~~~lq~~~eK-~ik~~~~LsE~E~--qiLv---alYSg~~~~sl~~~lGv~~~el~~l~drlI~~gl~~iV~iRk~iel 269 (284)
T COG2469 196 LYSYLQNIKEK-EIKEKETLSEIEK--QILV---ALYSGGDSASLELFLGVDTDELEILYDRLIDKGLLKIVKIRKEIEL 269 (284)
T ss_pred HHHHHHHHHHh-hhccccccchhhh--eeee---eEecCCCchhhhhHhCCcHHHHHHHHHHHHHhchhheEeeehheec
Confidence 55666665321 1223345666542 2222 2367888888999999998888888999999998864 4678999
Q ss_pred CcchHHHHHHHHH
Q psy2383 374 TSFGRYFLNDLQQ 386 (391)
Q Consensus 374 T~~G~~~~~~i~~ 386 (391)
|+.|+-..+.++.
T Consensus 270 t~~Gr~~vse~ik 282 (284)
T COG2469 270 TPRGRAIVSEIIK 282 (284)
T ss_pred chhHHHHHHHHhh
Confidence 9999998887764
No 492
>smart00642 Aamy Alpha-amylase domain.
Probab=46.60 E-value=48 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC
Q psy2383 148 RTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ 180 (391)
Q Consensus 148 R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq 180 (391)
+-.+.+++.+.++.+++. +. |-+|+++..-+.
T Consensus 65 ~~Gt~~d~~~lv~~~h~~Gi~-vilD~V~NH~~~ 97 (166)
T smart00642 65 RFGTMEDFKELVDAAHARGIK-VILDVVINHTSD 97 (166)
T ss_pred ccCCHHHHHHHHHHHHHCCCE-EEEEECCCCCCC
Confidence 345889999999999999 86 899999876554
No 493
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=46.58 E-value=66 Score=29.66 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=40.0
Q ss_pred HHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEE
Q psy2383 323 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIK 372 (391)
Q Consensus 323 e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~ 372 (391)
+.++..|+....+...++.+.+|++...++.-|..|++.|++....+...
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~r~~gga~ 57 (251)
T PRK13509 8 QILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAE 57 (251)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCcc
Confidence 34555566666799999999999998888899999999999987655543
No 494
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=46.40 E-value=57 Score=30.13 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=35.5
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+...-++..++....+. +.|+.-...-|+.+.+.++.||+.|..+.+.+-
T Consensus 19 s~t~AA~~L~isqpavS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~ 71 (290)
T PRK10837 19 STTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGRLLYPRAL 71 (290)
T ss_pred CHHHHHHHhCCCccHHHHHHHHHHHHhCCccEeecCCeEEECHhHHHHHHHHH
Confidence 44555556666544443 455555667899999999999999999887654
No 495
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=46.32 E-value=2.6e+02 Score=26.43 Aligned_cols=76 Identities=8% Similarity=-0.078 Sum_probs=41.2
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.++.+.+.||+.|.++=-|+-- -..|.++-.+.++.+.+... -.+-+|.|.-+ +.++..+..+.+.++|++
T Consensus 33 li~~l~~~Gv~Gi~~~GstGE~-------~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 33 HLEWLAPYGAAALFAAGGTGEF-------FSLTPDEYSQVVRAAVETTA-GRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred HHHHHHHcCCCEEEECcCCcCc-------ccCCHHHHHHHHHHHHHHhC-CCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 4444555677776653211110 11245555555655555411 12345667643 667777777777777877
Q ss_pred eEEEe
Q psy2383 199 HLSLY 203 (391)
Q Consensus 199 ~is~y 203 (391)
.+.+.
T Consensus 104 av~~~ 108 (303)
T PRK03620 104 GILLL 108 (303)
T ss_pred EEEEC
Confidence 77553
No 496
>PRK08392 hypothetical protein; Provisional
Probab=46.22 E-value=1.5e+02 Score=26.45 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy2383 84 DTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEI 161 (391)
Q Consensus 84 ~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~ 161 (391)
.+.+.++++.+.+. .+.+|.| ....+.+.++.+++.|+ +|++|=.+=.++- +|+ +.++++.
T Consensus 136 ~~~~~~i~~~~~~~-------g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~---vg~------~~~a~~~ 198 (215)
T PRK08392 136 EEELKEILDLAEAY-------GKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPED---VGN------VSWSLKV 198 (215)
T ss_pred HHHHHHHHHHHHHh-------CCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHH---CCc------HHHHHHH
Confidence 45778888888775 2334433 44557889999999997 7999977644433 231 3456777
Q ss_pred HHhh-cc
Q psy2383 162 AKQY-FN 167 (391)
Q Consensus 162 ~~~~-~~ 167 (391)
++++ ++
T Consensus 199 ~~~~g~~ 205 (215)
T PRK08392 199 FKKAGGK 205 (215)
T ss_pred HHHcCCC
Confidence 7777 54
No 497
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional
Probab=46.19 E-value=44 Score=31.46 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=36.3
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+.+.-++..++....+. +.|+.-...-|+.+++.++.||+.|..+...+-
T Consensus 20 S~s~AAe~L~isqsavS~~Ik~LE~~lg~~Lf~R~~~~v~LT~~G~~l~~~a~ 72 (309)
T PRK11013 20 SLTEAARLLHTSQPTVSRELARFEKVIGLKLFERVRGRLHPTVQGLRLFEEVQ 72 (309)
T ss_pred cHHHHHHHHCCCcHHHHHHHHHHHHHhCceeeeecCCCcccCHHHHHHHHHHH
Confidence 55566666676654444 445555556799999999999999999988664
No 498
>PRK12423 LexA repressor; Provisional
Probab=46.19 E-value=84 Score=27.87 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=29.1
Q ss_pred ChhHHHHHhCC-CHHHHHHHHHHHHHCCCeEEcCC
Q psy2383 336 SPNLFFERTGI-NIKIIESKLKNAEKLGLLKRNNK 369 (391)
Q Consensus 336 ~~~~~~~~~~~-~~~~~~~~l~~l~~~gl~~~~~~ 369 (391)
+..++.+.+|. +...+...|+.|++.|++..+.+
T Consensus 27 s~~eia~~~g~~s~~~v~~~l~~L~~~G~l~~~~~ 61 (202)
T PRK12423 27 SLAEIAQAFGFASRSVARKHVQALAEAGLIEVVPN 61 (202)
T ss_pred CHHHHHHHhCCCChHHHHHHHHHHHHCCCEEecCC
Confidence 77889999994 66678899999999999998754
No 499
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.13 E-value=37 Score=31.98 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=42.1
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
+++.|.+-- ++++++++.++.++.. .-+|+.. .++.+.++.+++.||+.||+|-=+.
T Consensus 214 gaDiI~LDn-----~s~e~l~~av~~~~~~--------~~leaSG-GI~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 214 GVDAVLLDN-----MTPDTLREAVAIVAGR--------AITEASG-RITPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CCCEEEeCC-----CCHHHHHHHHHHhCCC--------ceEEEEC-CCCHHHHHHHHhcCCCEEEeChhhc
Confidence 467777732 4678888888766432 1266654 5999999999999999999996554
No 500
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=45.82 E-value=3.8e+02 Score=28.76 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=94.4
Q ss_pred HHHHHHhCCCCCCcEEEEeeCC-CCCCHHHHHHhHHCCCCEEEEecCCC-----CHHHHHHh--CCCCCHHHHHHHHHHH
Q psy2383 91 LKNIKKLLLFKKNISITLEANP-STFEIEKFHSYSIIGINRLSIGIQSF-----NNKYLNIL--GRTHDSKQAKYAIEIA 162 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p-~~l~~e~l~~l~~~Gv~risiGvqS~-----~~~~l~~l--~R~~~~~~~~~~i~~~ 162 (391)
-+.|++..+. +...-+-| +..+...++.++++|.. +.+..+.+ ++-.+.++ ....+.+++...+...
T Consensus 234 ~~~Ie~~lG~----~p~~FayPyG~yn~~~~~iak~aGy~-~afTt~~G~~~~~d~~~LpRi~I~~~~sl~~F~~~l~~~ 308 (672)
T PRK14581 234 TQRIVQATGK----QPRVWVWPYGAPNGTVLNILRQHGYQ-LAMTLDPGVANINDLMNIPRILISNNPSLKDFALTVTSV 308 (672)
T ss_pred HHHHHHHhCC----CCCEEEcCCCCcCHHHHHHHHHCCCc-EEEECCCCCCCCCCCCcCceEEeCCCCCHHHHHHHHhhc
Confidence 3445555442 22333445 35689999999999984 55554433 22222222 3445777888777665
Q ss_pred Hhh----cccceEeEecC-CCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCC---CCCCCCCHHHHHHHHHHH
Q psy2383 163 KQY----FNNFNLDLIYA-LPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKY---PPLSMPSNDENAVMQDKI 234 (391)
Q Consensus 163 ~~~----~~~v~~dlI~G-lPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~---~~~~~p~~~~~~~~~~~~ 234 (391)
.+. +..|.+|.||. =|.|..+.+-.-++.+.++++++|-+-.+.=..|.-.... +...+| -.+++|..+
T Consensus 309 ~~~~~~r~~~vdld~vyd~dp~q~~~nl~~l~~ri~~~~~~~VyLqafadp~gdg~~~~lYFpnr~lP---mraDlfnrv 385 (672)
T PRK14581 309 QEKNIMRVAHVDLDYLYDPDPAQEKENLDKLVQRISDLRVTHVFLQAFSDPKGDGNIRQVYFPNRWIP---MRQDLFNRV 385 (672)
T ss_pred cccCCceEEEeccccccCCCHHHHhhhHHHHHHHHHhcCCCEEEEEeeeCCCCCCceeeEEecCCccc---HHHhhhhHH
Confidence 533 22466777887 4678888888889999999999998888864434321111 011344 456778777
Q ss_pred HHHHH-HCCCcee---ccccccc
Q psy2383 235 TSLLK-NNYYKNY---EISAYSK 253 (391)
Q Consensus 235 ~~~L~-~~Gy~~y---e~~~fa~ 253 (391)
.-.|. .+|-..| .+..|..
T Consensus 386 awql~tR~~v~vyAWmpvl~~~l 408 (672)
T PRK14581 386 VWQLASRPDVEVYAWMPVLAFDM 408 (672)
T ss_pred HHHHHhhhCceEEEeeehhhccC
Confidence 55565 5587776 3445544
Done!