Query psy2383
Match_columns 391
No_of_seqs 289 out of 2209
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olt_A Oxygen-independent copr 100.0 1E-74 3.4E-79 580.9 36.3 373 14-390 50-442 (457)
2 1r30_A Biotin synthase; SAM ra 100.0 1.2E-30 4E-35 254.7 18.7 253 18-307 68-333 (369)
3 2qgq_A Protein TM_1862; alpha- 100.0 1.9E-29 6.4E-34 239.7 18.4 210 15-237 2-223 (304)
4 3t7v_A Methylornithine synthas 99.9 6E-25 2.1E-29 212.7 15.5 239 17-276 59-303 (350)
5 3iix_A Biotin synthetase, puta 99.9 1.5E-23 5.1E-28 202.7 19.2 201 24-240 61-262 (348)
6 3c8f_A Pyruvate formate-lyase 99.8 2.7E-17 9.4E-22 150.1 19.1 219 11-245 14-243 (245)
7 2yx0_A Radical SAM enzyme; pre 99.7 1.6E-16 5.5E-21 153.0 18.1 202 25-238 80-306 (342)
8 1tv8_A MOAA, molybdenum cofact 99.7 1E-15 3.5E-20 147.2 21.6 182 18-215 15-206 (340)
9 2z2u_A UPF0026 protein MJ0257; 99.4 1E-12 3.5E-17 124.5 14.5 210 16-245 50-288 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.3 3.4E-11 1.1E-15 118.6 18.4 171 24-215 123-302 (416)
11 3rfa_A Ribosomal RNA large sub 99.1 5.3E-09 1.8E-13 101.7 21.0 217 9-245 107-341 (404)
12 3can_A Pyruvate-formate lyase- 98.8 2.1E-07 7E-12 80.7 16.3 132 70-212 5-141 (182)
13 4fhd_A Spore photoproduct lyas 97.5 0.0003 1E-08 67.2 9.4 154 26-194 117-282 (368)
14 1r7j_A Conserved hypothetical 96.3 0.022 7.5E-07 43.3 8.7 51 334-384 20-70 (95)
15 2x4h_A Hypothetical protein SS 95.9 0.055 1.9E-06 43.7 9.9 57 330-386 27-83 (139)
16 1tbx_A ORF F-93, hypothetical 95.7 0.026 8.8E-07 42.9 6.8 59 329-387 17-83 (99)
17 1on2_A Transcriptional regulat 95.6 0.068 2.3E-06 43.4 9.5 63 323-385 11-74 (142)
18 3hrs_A Metalloregulator SCAR; 95.6 0.059 2E-06 47.4 9.6 55 332-386 18-73 (214)
19 2qvo_A Uncharacterized protein 95.5 0.026 8.8E-07 42.7 6.1 53 335-387 31-87 (95)
20 2cw6_A Hydroxymethylglutaryl-C 95.5 0.053 1.8E-06 50.3 9.2 108 116-237 82-197 (298)
21 2xvc_A ESCRT-III, SSO0910; cel 95.4 0.04 1.4E-06 37.0 5.6 39 329-367 19-58 (59)
22 1bja_A Transcription regulator 95.3 0.069 2.4E-06 40.4 7.6 59 329-387 25-84 (95)
23 1qwg_A PSL synthase;, (2R)-pho 95.2 0.46 1.6E-05 42.4 13.7 131 47-203 25-168 (251)
24 3nrv_A Putative transcriptiona 95.2 0.052 1.8E-06 44.1 7.3 71 314-387 37-114 (148)
25 1ydn_A Hydroxymethylglutaryl-C 95.2 0.21 7E-06 46.1 12.1 97 102-204 71-176 (295)
26 3g3z_A NMB1585, transcriptiona 95.1 0.075 2.6E-06 43.1 8.2 60 327-386 38-104 (145)
27 1jgs_A Multiple antibiotic res 95.1 0.061 2.1E-06 43.1 7.4 59 329-387 43-108 (138)
28 2h09_A Transcriptional regulat 95.0 0.12 4.2E-06 42.5 9.3 64 322-385 42-106 (155)
29 2fbh_A Transcriptional regulat 95.0 0.11 3.8E-06 41.8 8.9 57 330-386 48-111 (146)
30 2hr3_A Probable transcriptiona 95.0 0.094 3.2E-06 42.5 8.3 60 327-386 42-109 (147)
31 3ech_A MEXR, multidrug resista 94.9 0.042 1.5E-06 44.4 6.0 71 314-387 34-111 (142)
32 2pg4_A Uncharacterized protein 94.9 0.067 2.3E-06 40.3 6.7 59 329-387 24-89 (95)
33 3bro_A Transcriptional regulat 94.9 0.071 2.4E-06 42.8 7.3 53 334-386 50-109 (141)
34 3oop_A LIN2960 protein; protei 94.9 0.074 2.5E-06 43.0 7.5 71 314-387 34-111 (143)
35 3s2w_A Transcriptional regulat 94.9 0.069 2.4E-06 44.1 7.4 59 329-387 59-124 (159)
36 3e6m_A MARR family transcripti 94.9 0.062 2.1E-06 44.5 7.0 60 328-387 61-127 (161)
37 3cdh_A Transcriptional regulat 94.8 0.11 3.7E-06 42.6 8.3 61 326-386 49-116 (155)
38 3bj6_A Transcriptional regulat 94.8 0.093 3.2E-06 42.7 7.9 58 329-386 49-113 (152)
39 3k0l_A Repressor protein; heli 94.7 0.071 2.4E-06 44.2 7.1 71 314-387 43-120 (162)
40 4hbl_A Transcriptional regulat 94.7 0.063 2.2E-06 43.9 6.6 60 328-387 49-115 (149)
41 4aik_A Transcriptional regulat 94.6 0.22 7.7E-06 40.9 9.8 58 330-387 42-106 (151)
42 1lj9_A Transcriptional regulat 94.6 0.084 2.9E-06 42.6 7.1 58 329-386 38-102 (144)
43 2gxg_A 146AA long hypothetical 94.6 0.13 4.4E-06 41.5 8.2 58 328-386 45-109 (146)
44 3eco_A MEPR; mutlidrug efflux 94.6 0.099 3.4E-06 41.9 7.4 55 333-387 46-107 (139)
45 3df8_A Possible HXLR family tr 94.6 0.14 4.7E-06 39.9 7.9 54 332-385 38-97 (111)
46 3b73_A PHIH1 repressor-like pr 94.5 0.085 2.9E-06 41.3 6.5 59 324-382 17-78 (111)
47 3hsr_A HTH-type transcriptiona 94.5 0.083 2.8E-06 42.6 6.7 71 314-387 33-110 (140)
48 3deu_A Transcriptional regulat 94.4 0.14 4.9E-06 42.7 8.3 56 332-387 66-128 (166)
49 2hzt_A Putative HTH-type trans 94.4 0.12 4.3E-06 39.8 7.3 53 332-384 25-85 (107)
50 2rdp_A Putative transcriptiona 94.4 0.12 4.1E-06 42.0 7.6 59 329-387 51-116 (150)
51 2p8t_A Hypothetical protein PH 94.4 0.13 4.5E-06 44.5 8.0 54 333-386 29-82 (200)
52 3bpv_A Transcriptional regulat 94.3 0.091 3.1E-06 42.0 6.6 59 328-386 37-102 (138)
53 2a61_A Transcriptional regulat 94.3 0.12 4.1E-06 41.6 7.4 58 329-386 42-106 (145)
54 2nnn_A Probable transcriptiona 94.3 0.1 3.4E-06 41.8 6.8 70 314-386 35-111 (140)
55 3fm5_A Transcriptional regulat 94.3 0.13 4.6E-06 41.8 7.7 56 332-387 52-114 (150)
56 2fa5_A Transcriptional regulat 94.2 0.13 4.3E-06 42.5 7.4 58 329-386 58-122 (162)
57 3cjn_A Transcriptional regulat 94.1 0.13 4.3E-06 42.6 7.2 59 328-386 60-125 (162)
58 2eth_A Transcriptional regulat 93.9 0.15 5.2E-06 41.7 7.3 59 329-387 53-118 (154)
59 1s3j_A YUSO protein; structura 93.9 0.1 3.5E-06 42.6 6.3 58 329-386 46-110 (155)
60 2fxa_A Protease production reg 93.9 0.13 4.3E-06 44.9 7.1 59 329-387 57-122 (207)
61 4a5n_A Uncharacterized HTH-typ 93.9 0.17 5.9E-06 40.8 7.3 54 332-385 37-98 (131)
62 2fbi_A Probable transcriptiona 93.8 0.11 3.7E-06 41.7 6.1 60 328-387 44-110 (142)
63 3f3x_A Transcriptional regulat 93.8 0.12 4E-06 41.8 6.3 58 329-387 46-110 (144)
64 2qww_A Transcriptional regulat 93.6 0.17 5.9E-06 41.2 7.2 58 329-386 50-116 (154)
65 2f2e_A PA1607; transcription f 93.6 0.21 7.3E-06 40.9 7.6 53 332-384 35-93 (146)
66 2bv6_A MGRA, HTH-type transcri 93.6 0.062 2.1E-06 43.3 4.3 58 328-385 45-109 (142)
67 2nyx_A Probable transcriptiona 93.6 0.15 5E-06 42.6 6.7 58 329-386 54-118 (168)
68 2frh_A SARA, staphylococcal ac 93.4 0.088 3E-06 42.0 4.9 55 333-387 52-113 (127)
69 1yyv_A Putative transcriptiona 93.4 0.16 5.5E-06 40.9 6.4 58 327-385 42-107 (131)
70 3bja_A Transcriptional regulat 93.3 0.096 3.3E-06 41.9 5.0 58 329-386 42-106 (139)
71 2fsw_A PG_0823 protein; alpha- 93.3 0.16 5.5E-06 39.1 6.0 54 332-385 36-97 (107)
72 1xmk_A Double-stranded RNA-spe 93.2 0.25 8.6E-06 36.0 6.4 58 322-379 13-74 (79)
73 1ub9_A Hypothetical protein PH 93.2 0.17 5.9E-06 37.9 5.9 55 332-386 28-89 (100)
74 1z7u_A Hypothetical protein EF 93.1 0.21 7.2E-06 38.8 6.5 53 333-385 34-94 (112)
75 3boq_A Transcriptional regulat 93.0 0.088 3E-06 43.4 4.4 56 331-386 59-121 (160)
76 1ydo_A HMG-COA lyase; TIM-barr 93.0 0.61 2.1E-05 43.3 10.5 96 102-203 73-177 (307)
77 3bdd_A Regulatory protein MARR 92.9 0.25 8.5E-06 39.5 6.9 54 328-381 39-99 (142)
78 3nqo_A MARR-family transcripti 92.9 0.32 1.1E-05 41.5 7.9 56 332-387 55-117 (189)
79 2ftp_A Hydroxymethylglutaryl-C 92.8 1.2 4E-05 41.2 12.1 97 102-203 75-179 (302)
80 1fx7_A Iron-dependent represso 92.8 0.38 1.3E-05 42.5 8.5 53 333-385 21-76 (230)
81 1y0u_A Arsenical resistance op 92.7 0.48 1.6E-05 35.5 7.9 48 332-379 41-88 (96)
82 2pex_A Transcriptional regulat 92.6 0.13 4.5E-06 42.0 4.9 57 328-384 55-118 (153)
83 3jw4_A Transcriptional regulat 92.6 0.085 2.9E-06 42.9 3.7 55 333-387 56-117 (148)
84 3ble_A Citramalate synthase fr 92.5 0.72 2.5E-05 43.4 10.5 151 68-238 55-211 (337)
85 3tgn_A ADC operon repressor AD 92.4 0.42 1.4E-05 38.4 7.7 68 314-385 35-109 (146)
86 4b8x_A SCO5413, possible MARR- 92.2 0.34 1.2E-05 39.5 6.9 54 333-386 50-110 (147)
87 3cta_A Riboflavin kinase; stru 92.2 0.21 7.1E-06 44.2 6.0 56 332-387 25-84 (230)
88 3u2r_A Regulatory protein MARR 92.2 0.16 5.6E-06 42.3 5.0 55 333-387 61-122 (168)
89 2qq9_A Diphtheria toxin repres 92.0 0.36 1.2E-05 42.6 7.3 53 334-386 22-77 (226)
90 4fx0_A Probable transcriptiona 91.6 0.3 1E-05 39.9 5.9 53 334-386 52-110 (148)
91 3kp7_A Transcriptional regulat 91.5 0.3 1E-05 39.6 5.8 56 331-386 48-112 (151)
92 1sfx_A Conserved hypothetical 91.2 0.69 2.3E-05 34.9 7.3 59 329-387 29-93 (109)
93 2wte_A CSA3; antiviral protein 91.1 0.61 2.1E-05 41.7 7.8 56 329-384 161-218 (244)
94 1z91_A Organic hydroperoxide r 91.0 0.071 2.4E-06 43.2 1.4 57 328-384 48-111 (147)
95 1u83_A Phosphosulfolactate syn 90.9 3.3 0.00011 37.3 12.3 129 46-202 51-191 (276)
96 3l7w_A Putative uncharacterize 90.7 0.47 1.6E-05 36.6 5.9 45 343-387 35-87 (108)
97 3cuo_A Uncharacterized HTH-typ 90.6 0.79 2.7E-05 34.1 7.1 61 326-386 30-94 (99)
98 2xzm_T RPS19E; ribosome, trans 90.4 1.3 4.5E-05 36.2 8.3 58 332-389 71-148 (155)
99 2obp_A Putative DNA-binding pr 89.8 1.2 4.2E-05 33.6 7.3 51 334-384 36-91 (96)
100 3i71_A Ethanolamine utilizatio 89.6 1.4 4.8E-05 29.5 6.4 44 332-375 16-59 (68)
101 2co5_A Viral protein F93; vira 89.3 1.2 4E-05 33.9 7.0 49 339-387 33-87 (99)
102 2oqg_A Possible transcriptiona 89.3 1.3 4.4E-05 33.9 7.5 53 332-384 32-88 (114)
103 1qbj_A Protein (double-strande 89.2 2.3 7.8E-05 31.0 8.2 63 315-377 5-73 (81)
104 3ewb_X 2-isopropylmalate synth 89.0 1.6 5.6E-05 40.0 9.1 148 68-237 40-191 (293)
105 1p4x_A Staphylococcal accessor 88.7 0.69 2.4E-05 41.5 6.2 71 314-387 155-234 (250)
106 3iz6_S 40S ribosomal protein S 88.5 0.52 1.8E-05 38.3 4.6 39 351-389 103-142 (146)
107 1xn7_A Hypothetical protein YH 88.2 1.2 4.1E-05 32.3 6.0 44 324-367 6-49 (78)
108 2v7f_A RPS19, RPS19E SSU ribos 88.2 1.1 3.9E-05 36.8 6.6 52 338-389 71-137 (150)
109 1nvm_A HOA, 4-hydroxy-2-oxoval 87.8 3 0.0001 39.2 10.3 99 89-204 71-170 (345)
110 3f6v_A Possible transcriptiona 87.6 1.1 3.7E-05 36.9 6.2 66 324-390 62-131 (151)
111 2fbk_A Transcriptional regulat 87.5 0.31 1E-05 41.2 2.9 53 334-386 86-145 (181)
112 3f8b_A Transcriptional regulat 87.4 3 0.0001 32.4 8.5 43 345-387 44-95 (116)
113 2yci_X 5-methyltetrahydrofolat 87.3 8 0.00027 34.9 12.4 57 68-132 47-105 (271)
114 3n9k_A Glucan 1,3-beta-glucosi 87.3 3 0.0001 40.1 10.1 118 114-245 73-220 (399)
115 3u5c_T 40S ribosomal protein S 87.3 0.49 1.7E-05 38.4 3.7 39 351-389 101-140 (144)
116 2o0m_A Transcriptional regulat 86.9 0.12 4.2E-06 48.8 0.0 60 325-384 25-84 (345)
117 1hsj_A Fusion protein consisti 86.6 0.72 2.5E-05 45.3 5.4 63 326-388 410-481 (487)
118 3ivs_A Homocitrate synthase, m 86.2 3.3 0.00011 40.1 9.6 124 68-203 74-200 (423)
119 4esf_A PADR-like transcription 86.2 3.8 0.00013 31.9 8.4 43 345-387 41-92 (117)
120 1okr_A MECI, methicillin resis 85.9 0.93 3.2E-05 35.3 4.8 53 332-384 22-83 (123)
121 2nx9_A Oxaloacetate decarboxyl 85.6 3.3 0.00011 40.6 9.4 141 67-238 42-200 (464)
122 3eeg_A 2-isopropylmalate synth 85.5 2.7 9.3E-05 39.1 8.5 126 68-202 41-170 (325)
123 1fob_A Beta-1,4-galactanase; B 85.1 23 0.00079 32.8 14.8 127 117-254 30-183 (334)
124 3jth_A Transcription activator 85.1 4.8 0.00016 29.8 8.3 61 326-387 29-93 (98)
125 1yg2_A Gene activator APHA; vi 85.1 2.8 9.7E-05 35.2 7.8 43 345-387 34-85 (179)
126 3hhh_A Transcriptional regulat 84.9 3.9 0.00013 31.9 7.9 43 345-387 43-94 (116)
127 2k02_A Ferrous iron transport 84.6 1.4 4.9E-05 32.6 4.8 43 325-367 7-49 (87)
128 1aj0_A DHPS, dihydropteroate s 84.4 14 0.00049 33.5 12.6 59 68-131 51-114 (282)
129 2heo_A Z-DNA binding protein 1 83.6 4 0.00014 28.2 6.7 42 333-374 24-66 (67)
130 1rqb_A Transcarboxylase 5S sub 83.5 3.2 0.00011 41.5 8.4 141 67-238 59-217 (539)
131 3rmj_A 2-isopropylmalate synth 83.5 5 0.00017 38.1 9.5 127 68-203 47-177 (370)
132 1xma_A Predicted transcription 83.2 3.2 0.00011 33.8 7.0 43 345-387 73-124 (145)
133 1qgp_A Protein (double strande 82.8 3.6 0.00012 29.5 6.3 51 325-375 19-75 (77)
134 1p4x_A Staphylococcal accessor 82.5 1.2 4.1E-05 39.9 4.5 55 333-387 49-110 (250)
135 4esb_A Transcriptional regulat 81.7 3.3 0.00011 32.2 6.3 42 346-387 40-90 (115)
136 2b0l_A GTP-sensing transcripti 81.5 3.1 0.00011 31.6 5.9 50 336-385 45-97 (102)
137 3aaf_A Werner syndrome ATP-dep 81.4 1.9 6.4E-05 34.7 4.8 37 348-384 67-109 (134)
138 1hjs_A Beta-1,4-galactanase; 4 81.3 26 0.00088 32.5 13.4 127 117-255 30-183 (332)
139 1oyi_A Double-stranded RNA-bin 81.1 3.1 0.00011 30.4 5.4 53 323-376 20-75 (82)
140 3ri2_A Transcriptional regulat 80.8 3.2 0.00011 32.8 5.9 44 344-387 48-99 (123)
141 2g7u_A Transcriptional regulat 80.4 5.6 0.00019 35.5 8.2 50 333-382 28-77 (257)
142 2jt1_A PEFI protein; solution 80.1 5.1 0.00018 28.7 6.3 36 333-368 23-58 (77)
143 2ztj_A Homocitrate synthase; ( 80.0 15 0.00052 34.8 11.5 124 68-204 38-165 (382)
144 1mkm_A ICLR transcriptional re 79.7 9.2 0.00032 33.8 9.4 52 333-384 22-74 (249)
145 2dql_A PEX protein; circadian 79.4 2.6 8.9E-05 32.8 4.9 43 345-387 53-105 (115)
146 2bdq_A Copper homeostasis prot 79.1 9.2 0.00031 33.4 8.8 109 72-203 31-153 (224)
147 1eye_A DHPS 1, dihydropteroate 78.8 19 0.00067 32.5 11.3 58 68-131 42-104 (280)
148 3lmz_A Putative sugar isomeras 78.8 13 0.00046 32.5 10.2 76 117-203 33-109 (257)
149 1u2w_A CADC repressor, cadmium 78.4 11 0.00039 29.2 8.5 52 328-379 50-105 (122)
150 2htj_A P fimbrial regulatory p 78.3 5.6 0.00019 28.4 6.2 48 328-375 8-61 (81)
151 1twd_A Copper homeostasis prot 77.9 7.4 0.00025 34.8 7.9 104 72-203 31-148 (256)
152 3pqk_A Biofilm growth-associat 77.3 13 0.00043 27.6 8.2 54 333-386 35-93 (102)
153 2d1h_A ST1889, 109AA long hypo 76.8 11 0.00038 27.8 7.9 53 332-384 34-96 (109)
154 2lkp_A Transcriptional regulat 75.4 11 0.00038 28.8 7.7 51 333-383 44-96 (119)
155 3f6o_A Probable transcriptiona 75.0 6.5 0.00022 30.4 6.2 54 332-385 29-86 (118)
156 3dv8_A Transcriptional regulat 74.5 14 0.00046 31.2 8.8 46 334-379 169-214 (220)
157 2esh_A Conserved hypothetical 74.0 8.1 0.00028 29.9 6.5 42 346-387 46-96 (118)
158 1tx2_A DHPS, dihydropteroate s 73.8 34 0.0012 31.2 11.5 56 68-131 76-139 (297)
159 1r1u_A CZRA, repressor protein 73.8 16 0.00056 27.3 8.1 48 332-379 37-88 (106)
160 2kko_A Possible transcriptiona 73.4 6.5 0.00022 29.8 5.7 47 333-379 37-87 (108)
161 3tva_A Xylose isomerase domain 72.9 35 0.0012 30.2 11.6 108 117-244 24-154 (290)
162 2e1n_A PEX, period extender; c 72.5 6.5 0.00022 31.6 5.7 42 345-386 65-116 (138)
163 3dp7_A SAM-dependent methyltra 72.4 7.7 0.00026 36.3 7.1 50 333-382 49-98 (363)
164 2xrn_A HTH-type transcriptiona 72.1 11 0.00038 33.1 7.7 51 333-383 20-72 (241)
165 1h4p_A Glucan 1,3-beta-glucosi 72.1 22 0.00074 34.0 10.3 120 114-243 73-221 (408)
166 2dqw_A Dihydropteroate synthas 71.6 60 0.002 29.5 12.6 58 68-131 65-127 (294)
167 3elk_A Putative transcriptiona 70.2 2.7 9.1E-05 32.9 2.8 38 347-384 46-92 (117)
168 2y75_A HTH-type transcriptiona 70.1 21 0.00072 27.7 8.2 45 333-377 25-72 (129)
169 2o0y_A Transcriptional regulat 70.0 15 0.0005 32.8 8.1 53 332-384 36-89 (260)
170 3cyv_A URO-D, UPD, uroporphyri 69.8 21 0.00073 33.2 9.6 62 68-133 200-269 (354)
171 3u1d_A Uncharacterized protein 69.7 22 0.00076 29.0 8.3 49 335-383 46-107 (151)
172 2zfw_A PEX; five alpha-helices 69.2 5.3 0.00018 32.6 4.5 41 346-386 76-126 (148)
173 2y5s_A DHPS, dihydropteroate s 68.7 34 0.0011 31.2 10.3 72 68-146 59-136 (294)
174 2qm3_A Predicted methyltransfe 68.6 13 0.00046 34.9 7.9 79 296-383 25-103 (373)
175 3vni_A Xylose isomerase domain 68.5 30 0.001 30.7 10.1 110 117-244 20-147 (294)
176 2ia2_A Putative transcriptiona 68.4 8.6 0.00029 34.4 6.2 51 333-383 35-85 (265)
177 2q02_A Putative cytoplasmic pr 67.6 61 0.0021 28.1 11.9 19 117-135 22-40 (272)
178 3mcz_A O-methyltransferase; ad 67.1 10 0.00034 35.2 6.6 49 333-381 55-103 (352)
179 2gau_A Transcriptional regulat 67.1 23 0.00077 30.2 8.6 45 334-378 180-224 (232)
180 2jsc_A Transcriptional regulat 67.0 13 0.00044 28.6 6.2 47 333-379 33-83 (118)
181 3qr3_A Endoglucanase EG-II; TI 66.8 16 0.00054 34.1 7.9 114 115-244 44-175 (340)
182 2zcw_A TTHA1359, transcription 66.7 25 0.00084 29.2 8.6 45 335-379 147-191 (202)
183 3la7_A Global nitrogen regulat 66.6 24 0.00083 30.4 8.7 45 334-378 193-237 (243)
184 2v9v_A Selenocysteine-specific 66.3 20 0.00067 28.1 7.4 46 330-375 83-130 (135)
185 1f6y_A 5-methyltetrahydrofolat 66.0 20 0.00067 32.1 8.0 56 68-131 38-95 (262)
186 2v79_A DNA replication protein 65.6 10 0.00035 30.3 5.5 63 314-376 29-102 (135)
187 3b02_A Transcriptional regulat 65.3 20 0.00068 29.7 7.6 45 335-379 140-184 (195)
188 2oz6_A Virulence factor regula 65.2 17 0.00059 30.2 7.3 41 335-375 165-205 (207)
189 3kfw_X Uncharacterized protein 65.1 11 0.00037 33.6 6.0 44 341-384 30-73 (247)
190 1ku9_A Hypothetical protein MJ 64.9 21 0.00072 27.9 7.4 52 332-383 39-95 (152)
191 1stz_A Heat-inducible transcri 64.8 15 0.00053 34.2 7.3 57 329-385 31-92 (338)
192 3cqj_A L-ribulose-5-phosphate 64.7 39 0.0013 30.0 10.0 97 104-203 17-128 (295)
193 3iwz_A CAP-like, catabolite ac 64.1 26 0.0009 29.6 8.4 41 335-375 188-228 (230)
194 3d0s_A Transcriptional regulat 64.1 24 0.00081 29.9 8.1 45 334-378 177-221 (227)
195 3ryp_A Catabolite gene activat 63.9 23 0.00079 29.5 7.9 41 335-375 168-208 (210)
196 3qfe_A Putative dihydrodipicol 63.7 34 0.0012 31.4 9.5 116 68-194 45-166 (318)
197 1j93_A UROD, uroporphyrinogen 63.5 76 0.0026 29.3 12.1 60 68-134 206-274 (353)
198 3o0f_A Putative metal-dependen 63.3 13 0.00044 34.1 6.3 38 116-165 215-252 (301)
199 3p6l_A Sugar phosphate isomera 62.7 21 0.00072 31.2 7.6 97 104-203 10-111 (262)
200 3lst_A CALO1 methyltransferase 62.6 12 0.00042 34.7 6.2 48 334-381 55-102 (348)
201 3e97_A Transcriptional regulat 62.5 25 0.00086 29.8 8.0 45 334-378 175-219 (231)
202 1r1t_A Transcriptional repress 62.1 38 0.0013 26.1 8.2 46 333-378 58-107 (122)
203 3c7j_A Transcriptional regulat 62.1 32 0.0011 30.0 8.6 47 332-378 47-94 (237)
204 3bdk_A D-mannonate dehydratase 62.0 13 0.00044 35.4 6.3 85 115-207 31-127 (386)
205 1tvn_A Cellulase, endoglucanas 61.5 44 0.0015 29.8 9.7 122 112-245 36-163 (293)
206 3dx5_A Uncharacterized protein 61.2 38 0.0013 29.8 9.2 115 117-244 18-138 (286)
207 3e6c_C CPRK, cyclic nucleotide 61.2 35 0.0012 29.4 8.8 45 334-378 177-221 (250)
208 2fmy_A COOA, carbon monoxide o 61.1 26 0.00091 29.5 7.8 46 333-378 166-212 (220)
209 3iwp_A Copper homeostasis prot 61.1 33 0.0011 31.1 8.5 108 70-202 67-185 (287)
210 2hl0_A Threonyl-tRNA synthetas 61.0 35 0.0012 27.4 7.6 48 190-246 66-113 (143)
211 2esn_A Probable transcriptiona 60.9 18 0.0006 32.2 6.9 50 336-385 26-78 (310)
212 3r4k_A Transcriptional regulat 60.9 23 0.00077 31.5 7.5 52 333-384 20-73 (260)
213 3dkw_A DNR protein; CRP-FNR, H 60.6 17 0.00059 30.7 6.5 43 334-376 178-220 (227)
214 4hty_A Cellulase; (alpha/beta) 60.5 59 0.002 30.2 10.7 123 115-245 86-223 (359)
215 1zyb_A Transcription regulator 60.5 30 0.001 29.6 8.1 42 335-376 187-228 (232)
216 2ijl_A AGR_C_4647P, molybdenum 60.4 24 0.00081 28.2 6.7 49 336-384 40-96 (135)
217 1wi9_A Protein C20ORF116 homol 60.0 9.3 0.00032 26.9 3.6 51 326-376 13-67 (72)
218 3szp_A Transcriptional regulat 59.7 24 0.00082 30.7 7.5 50 336-385 17-69 (291)
219 4ev0_A Transcription regulator 59.6 19 0.00064 30.2 6.5 46 334-379 163-208 (216)
220 2ze3_A DFA0005; organic waste 58.4 45 0.0015 30.0 9.0 118 112-243 21-144 (275)
221 2r3s_A Uncharacterized protein 58.3 15 0.00053 33.5 6.1 45 333-377 38-82 (335)
222 3lfk_A MSCTV, MARR like protei 57.6 18 0.00063 26.8 5.0 66 314-385 33-104 (129)
223 1vpq_A Hypothetical protein TM 57.4 27 0.00092 31.5 7.3 103 68-176 119-251 (273)
224 3ewb_X 2-isopropylmalate synth 56.8 86 0.0029 28.3 10.7 83 48-139 150-234 (293)
225 3kcc_A Catabolite gene activat 56.8 39 0.0013 29.5 8.3 41 335-375 218-258 (260)
226 4ay7_A Methylcobalamin\: coenz 56.4 1.2E+02 0.0042 27.8 12.6 139 68-237 203-346 (348)
227 3fxq_A LYSR type regulator of 56.2 27 0.00091 31.0 7.2 50 336-385 18-70 (305)
228 3e49_A Uncharacterized protein 56.1 54 0.0018 30.1 9.2 67 68-137 47-116 (311)
229 3ble_A Citramalate synthase fr 55.9 62 0.0021 29.9 9.8 80 48-139 169-250 (337)
230 3bg3_A Pyruvate carboxylase, m 55.8 89 0.0031 32.2 11.7 97 116-238 199-303 (718)
231 1bm9_A RTP, TER, replication t 55.5 21 0.00071 28.0 5.4 54 334-387 34-106 (122)
232 3mq0_A Transcriptional repress 54.7 33 0.0011 30.7 7.5 52 333-384 44-96 (275)
233 3vnd_A TSA, tryptophan synthas 54.7 55 0.0019 29.3 8.9 115 86-204 4-131 (267)
234 2eja_A URO-D, UPD, uroporphyri 54.1 1.3E+02 0.0045 27.4 13.9 59 68-133 192-258 (338)
235 2vn2_A DNAD, chromosome replic 54.0 38 0.0013 26.4 6.9 34 334-367 51-84 (128)
236 1i60_A IOLI protein; beta barr 53.8 29 0.00098 30.4 7.0 79 117-203 17-104 (278)
237 1j5y_A Transcriptional regulat 53.7 34 0.0012 28.6 7.0 52 325-376 26-79 (187)
238 3qc0_A Sugar isomerase; TIM ba 53.6 55 0.0019 28.4 8.8 106 117-244 21-138 (275)
239 1xg4_A Probable methylisocitra 53.3 91 0.0031 28.3 10.2 86 112-204 22-115 (295)
240 3obe_A Sugar phosphate isomera 53.2 31 0.0011 31.2 7.2 116 117-244 39-165 (305)
241 2cfx_A HTH-type transcriptiona 52.8 30 0.001 27.4 6.3 42 325-366 10-51 (144)
242 1tw3_A COMT, carminomycin 4-O- 52.1 30 0.001 31.9 7.1 49 333-381 51-100 (360)
243 1ixc_A CBNR, LYSR-type regulat 51.6 14 0.00047 32.6 4.4 50 336-385 17-69 (294)
244 1vjz_A Endoglucanase; TM1752, 51.4 57 0.0019 29.8 8.8 122 114-243 36-181 (341)
245 3l09_A Putative transcriptiona 51.3 16 0.00055 32.8 4.7 51 335-385 43-100 (266)
246 2w25_A Probable transcriptiona 51.1 28 0.00095 27.8 5.8 42 325-366 12-53 (150)
247 3cpr_A Dihydrodipicolinate syn 50.9 71 0.0024 29.0 9.2 97 68-179 50-152 (304)
248 2ehh_A DHDPS, dihydrodipicolin 50.8 66 0.0022 29.0 8.9 98 67-179 33-136 (294)
249 2ip2_A Probable phenazine-spec 50.8 23 0.00079 32.3 5.9 49 333-381 40-89 (334)
250 1ylf_A RRF2 family protein; st 50.7 31 0.001 27.7 6.0 43 334-376 30-74 (149)
251 4exq_A UPD, URO-D, uroporphyri 50.6 68 0.0023 30.0 9.3 63 68-133 210-279 (368)
252 2qul_A D-tagatose 3-epimerase; 50.5 1.3E+02 0.0043 26.3 11.5 76 117-202 20-107 (290)
253 4ham_A LMO2241 protein; struct 50.5 30 0.001 27.2 5.8 39 336-374 40-79 (134)
254 3r0a_A Putative transcriptiona 50.5 47 0.0016 25.6 6.9 36 332-367 38-75 (123)
255 2dbb_A Putative HTH-type trans 50.4 26 0.0009 27.9 5.6 42 325-366 14-55 (151)
256 2p0o_A Hypothetical protein DU 50.1 30 0.001 32.6 6.5 71 118-202 21-98 (372)
257 3e02_A Uncharacterized protein 50.1 78 0.0027 29.0 9.2 68 68-138 47-117 (311)
258 2cg4_A Regulatory protein ASNC 50.1 25 0.00086 28.1 5.4 42 325-366 13-54 (152)
259 3tqn_A Transcriptional regulat 50.1 29 0.00098 26.4 5.5 42 336-377 35-77 (113)
260 1x19_A CRTF-related protein; m 49.9 29 0.001 32.1 6.6 44 333-376 63-106 (359)
261 3flu_A DHDPS, dihydrodipicolin 49.7 57 0.002 29.5 8.3 97 68-179 41-143 (297)
262 3dxi_A Putative aldolase; TIM 49.6 17 0.00059 33.6 4.7 88 102-203 72-163 (320)
263 1h1n_A Endo type cellulase ENG 49.5 1.4E+02 0.0049 26.6 13.6 115 114-243 31-158 (305)
264 2bgc_A PRFA; bacterial infecti 49.5 27 0.00091 30.0 5.9 46 334-379 169-215 (238)
265 2qf7_A Pyruvate carboxylase pr 49.4 19 0.00064 39.6 5.7 99 115-238 646-751 (1165)
266 1egz_A Endoglucanase Z, EGZ, C 49.2 41 0.0014 30.0 7.3 116 114-244 38-160 (291)
267 2inf_A URO-D, UPD, uroporphyri 48.8 81 0.0028 29.2 9.5 103 67-197 205-317 (359)
268 2p5v_A Transcriptional regulat 48.8 35 0.0012 27.6 6.2 42 325-366 15-56 (162)
269 3hhg_A Transcriptional regulat 48.8 24 0.00082 31.1 5.6 51 336-386 19-72 (306)
270 2ek5_A Predicted transcription 48.6 37 0.0013 26.6 6.0 42 336-377 30-72 (129)
271 3kws_A Putative sugar isomeras 48.5 1.1E+02 0.0037 26.8 10.1 105 117-244 41-161 (287)
272 2fu4_A Ferric uptake regulatio 48.5 40 0.0014 23.6 5.8 35 333-367 32-71 (83)
273 1nvm_A HOA, 4-hydroxy-2-oxoval 48.3 1.5E+02 0.005 27.4 11.1 81 48-139 149-231 (345)
274 2p0o_A Hypothetical protein DU 48.2 31 0.001 32.6 6.2 116 85-245 50-174 (372)
275 3ndz_A Endoglucanase D; cellot 48.2 26 0.0009 32.5 5.9 124 114-243 42-186 (345)
276 3sxy_A Transcriptional regulat 48.1 59 0.002 27.6 7.9 48 335-382 36-84 (218)
277 3qze_A DHDPS, dihydrodipicolin 47.9 96 0.0033 28.3 9.6 97 68-179 57-159 (314)
278 2pn6_A ST1022, 150AA long hypo 47.7 26 0.00087 27.9 5.1 42 325-366 8-49 (150)
279 1ft9_A Carbon monoxide oxidati 47.5 37 0.0013 28.6 6.4 42 335-376 164-206 (222)
280 3k2z_A LEXA repressor; winged 47.4 40 0.0014 28.3 6.5 55 315-369 3-59 (196)
281 3i53_A O-methyltransferase; CO 47.4 31 0.001 31.5 6.2 49 333-381 37-86 (332)
282 2r8w_A AGR_C_1641P; APC7498, d 47.3 94 0.0032 28.6 9.5 113 50-179 54-170 (332)
283 2hs5_A Putative transcriptiona 47.1 82 0.0028 27.3 8.7 45 335-379 52-97 (239)
284 2ia0_A Putative HTH-type trans 46.7 41 0.0014 27.7 6.3 42 325-366 22-63 (171)
285 1o4u_A Type II quinolic acid p 46.5 1E+02 0.0035 27.8 9.4 92 88-206 180-271 (285)
286 3ihu_A Transcriptional regulat 46.3 78 0.0027 26.9 8.4 45 334-378 39-84 (222)
287 1q1h_A TFE, transcription fact 46.3 23 0.00077 26.6 4.3 34 334-367 33-66 (110)
288 3aof_A Endoglucanase; glycosyl 45.9 48 0.0016 29.9 7.2 112 114-242 33-161 (317)
289 3f4w_A Putative hexulose 6 pho 45.8 99 0.0034 25.9 8.9 90 89-203 42-134 (211)
290 3t8r_A Staphylococcus aureus C 45.8 79 0.0027 25.1 7.7 43 334-376 28-73 (143)
291 3b8i_A PA4872 oxaloacetate dec 45.6 93 0.0032 28.1 8.9 85 112-204 26-118 (287)
292 2hjp_A Phosphonopyruvate hydro 45.5 48 0.0017 30.1 7.0 86 112-204 20-111 (290)
293 3l21_A DHDPS, dihydrodipicolin 45.2 56 0.0019 29.7 7.5 97 68-179 49-151 (304)
294 1i1g_A Transcriptional regulat 45.2 18 0.00063 28.4 3.8 39 328-366 12-50 (141)
295 3tak_A DHDPS, dihydrodipicolin 45.1 1.1E+02 0.0037 27.5 9.5 111 50-179 21-137 (291)
296 3rmj_A 2-isopropylmalate synth 45.1 1.1E+02 0.0039 28.6 9.8 84 47-139 156-241 (370)
297 3daq_A DHDPS, dihydrodipicolin 44.7 51 0.0017 29.8 7.1 97 68-179 36-138 (292)
298 3s5o_A 4-hydroxy-2-oxoglutarat 44.7 1.8E+02 0.0061 26.3 11.6 82 114-203 31-116 (307)
299 3lwf_A LIN1550 protein, putati 44.6 1.2E+02 0.004 24.7 8.7 42 334-375 44-88 (159)
300 3nav_A Tryptophan synthase alp 44.6 58 0.002 29.2 7.3 85 116-202 36-131 (271)
301 1xky_A Dihydrodipicolinate syn 44.4 66 0.0023 29.2 7.9 97 68-179 46-148 (301)
302 1yx1_A Hypothetical protein PA 44.4 23 0.00078 31.1 4.6 75 117-204 26-105 (264)
303 3eb2_A Putative dihydrodipicol 44.3 30 0.001 31.5 5.5 117 54-181 24-142 (300)
304 1r3s_A URO-D, uroporphyrinogen 44.3 1.1E+02 0.0039 28.3 9.8 64 68-134 210-283 (367)
305 3neu_A LIN1836 protein; struct 44.2 31 0.0011 26.8 4.9 42 336-377 39-81 (125)
306 2yxg_A DHDPS, dihydrodipicolin 44.2 62 0.0021 29.1 7.6 113 54-179 20-136 (289)
307 1qzz_A RDMB, aclacinomycin-10- 44.1 32 0.0011 31.9 5.8 48 333-380 48-98 (374)
308 1xd7_A YWNA; structural genomi 44.1 67 0.0023 25.5 7.1 40 336-375 25-66 (145)
309 2qw5_A Xylose isomerase-like T 44.0 66 0.0022 29.2 8.0 78 118-200 35-126 (335)
310 3ctl_A D-allulose-6-phosphate 43.9 39 0.0013 29.5 6.0 159 74-277 33-198 (231)
311 2dk5_A DNA-directed RNA polyme 43.8 47 0.0016 24.3 5.5 50 313-365 16-67 (91)
312 3l9f_A Putative uncharacterize 43.6 31 0.0011 29.5 5.2 42 346-387 69-119 (204)
313 3aam_A Endonuclease IV, endoiv 43.5 59 0.002 28.3 7.3 45 86-133 15-68 (270)
314 3f8m_A GNTR-family protein tra 43.5 74 0.0025 27.8 7.9 48 328-375 29-77 (248)
315 3na8_A Putative dihydrodipicol 43.5 48 0.0016 30.4 6.8 97 68-179 58-160 (315)
316 3i4p_A Transcriptional regulat 43.5 41 0.0014 27.3 5.8 42 324-365 7-48 (162)
317 3s1x_A Probable transaldolase; 43.5 46 0.0016 28.9 6.2 97 78-204 28-133 (223)
318 3cqj_A L-ribulose-5-phosphate 43.4 1.5E+02 0.005 26.0 10.1 175 46-243 103-291 (295)
319 2dh2_A 4F2 cell-surface antige 43.4 68 0.0023 30.6 8.1 52 150-202 79-141 (424)
320 2y8k_A Arabinoxylanase, carboh 43.3 1E+02 0.0035 30.0 9.6 128 115-245 40-174 (491)
321 3l23_A Sugar phosphate isomera 43.2 1E+02 0.0036 27.5 9.1 109 117-244 32-159 (303)
322 3m5v_A DHDPS, dihydrodipicolin 42.9 78 0.0027 28.7 8.1 97 68-179 41-144 (301)
323 2whl_A Beta-mannanase, baman5; 42.9 1.8E+02 0.006 25.7 13.9 112 116-245 33-152 (294)
324 3ugs_B Undecaprenyl pyrophosph 42.7 51 0.0017 28.7 6.4 52 179-240 33-84 (225)
325 2cw6_A Hydroxymethylglutaryl-C 42.5 1.1E+02 0.0039 27.4 9.2 77 48-136 156-234 (298)
326 3inp_A D-ribulose-phosphate 3- 42.5 1.8E+02 0.006 25.6 13.6 134 69-244 56-195 (246)
327 2nx9_A Oxaloacetate decarboxyl 42.4 1.2E+02 0.0041 29.5 9.7 78 48-138 158-237 (464)
328 2d0j_A Galactosylgalactosylxyl 42.3 98 0.0034 27.3 8.2 85 78-165 9-93 (246)
329 2p4w_A Transcriptional regulat 42.2 49 0.0017 28.2 6.2 36 332-367 26-61 (202)
330 3lot_A Uncharacterized protein 42.2 1.2E+02 0.0041 27.7 9.2 66 68-138 47-119 (314)
331 2x7v_A Probable endonuclease 4 42.1 1.3E+02 0.0046 26.0 9.6 84 117-204 15-110 (287)
332 1hw1_A FADR, fatty acid metabo 42.0 55 0.0019 28.1 6.7 41 335-375 31-73 (239)
333 2p10_A MLL9387 protein; putati 42.0 1.9E+02 0.0067 26.0 11.2 103 90-204 81-191 (286)
334 1v84_A Galactosylgalactosylxyl 41.9 1.6E+02 0.0054 26.1 9.5 90 71-165 4-99 (253)
335 3by6_A Predicted transcription 41.7 36 0.0012 26.5 4.9 41 336-376 37-78 (126)
336 3nco_A Endoglucanase fncel5A; 41.6 91 0.0031 28.1 8.5 110 114-244 41-171 (320)
337 2e1c_A Putative HTH-type trans 41.4 30 0.001 28.5 4.7 42 325-366 32-73 (171)
338 1ece_A Endocellulase E1; glyco 41.3 1.8E+02 0.0061 26.4 10.6 121 117-243 47-194 (358)
339 2vp8_A Dihydropteroate synthas 41.0 1E+02 0.0035 28.3 8.5 57 68-131 78-141 (318)
340 3eeg_A 2-isopropylmalate synth 41.0 1.1E+02 0.0039 28.0 9.0 99 47-161 150-252 (325)
341 1sd4_A Penicillinase repressor 41.0 60 0.002 24.6 6.1 37 331-367 21-61 (126)
342 3k13_A 5-methyltetrahydrofolat 40.7 2.1E+02 0.0071 25.9 11.2 57 68-129 50-108 (300)
343 1vpy_A Protein (hypothetical p 40.6 95 0.0033 28.0 8.2 104 68-176 113-256 (289)
344 2lnb_A Z-DNA-binding protein 1 40.5 82 0.0028 22.4 5.9 54 321-374 20-75 (80)
345 1f6k_A N-acetylneuraminate lya 40.5 70 0.0024 28.8 7.4 111 54-179 23-140 (293)
346 2jtv_A Protein of unknown func 40.2 22 0.00075 23.7 2.7 28 352-379 28-60 (65)
347 1rqb_A Transcarboxylase 5S sub 40.1 1.5E+02 0.0053 29.3 10.2 79 48-137 175-255 (539)
348 3si9_A DHDPS, dihydrodipicolin 40.1 56 0.0019 29.9 6.7 97 68-179 56-158 (315)
349 2zj8_A DNA helicase, putative 39.9 1.3E+02 0.0044 30.7 10.1 33 350-382 455-488 (720)
350 2cyy_A Putative HTH-type trans 39.9 32 0.0011 27.5 4.5 42 325-366 12-53 (151)
351 2ftp_A Hydroxymethylglutaryl-C 39.9 1.3E+02 0.0044 27.1 9.1 77 48-136 159-237 (302)
352 2ve8_A FTSK, DNA translocase F 39.5 44 0.0015 23.5 4.4 35 333-367 23-57 (73)
353 1o5k_A DHDPS, dihydrodipicolin 39.4 67 0.0023 29.2 7.1 97 68-179 46-148 (306)
354 3tr9_A Dihydropteroate synthas 39.3 2.3E+02 0.0077 25.9 12.0 56 68-131 62-129 (314)
355 4hb7_A Dihydropteroate synthas 39.2 2.1E+02 0.0072 25.5 11.2 71 68-144 43-119 (270)
356 1jke_A O145, D-Tyr-trnaTyr dea 39.0 1.5E+02 0.0051 23.8 8.4 66 178-243 35-118 (145)
357 2cob_A LCOR protein; MLR2, KIA 38.9 5.9 0.0002 27.8 -0.2 40 148-187 12-52 (70)
358 1vzw_A Phosphoribosyl isomeras 38.9 83 0.0028 27.1 7.4 99 89-206 65-169 (244)
359 2qlz_A Transcription factor PF 38.8 32 0.0011 30.2 4.5 53 325-378 17-79 (232)
360 2h1v_A Ferrochelatase; rossman 38.6 94 0.0032 28.3 8.0 99 47-146 151-266 (310)
361 1ydo_A HMG-COA lyase; TIM-barr 38.4 69 0.0024 29.2 7.0 77 48-136 157-235 (307)
362 2dbo_A D-tyrosyl-tRNA(Tyr) dea 38.4 1.6E+02 0.0053 23.8 8.2 66 178-243 35-118 (148)
363 3pfi_A Holliday junction ATP-d 38.3 91 0.0031 28.1 8.0 50 333-382 278-328 (338)
364 3eoo_A Methylisocitrate lyase; 38.3 1.5E+02 0.0051 26.9 9.1 85 113-204 28-119 (298)
365 2wkj_A N-acetylneuraminate lya 38.2 82 0.0028 28.6 7.5 100 68-179 45-148 (303)
366 3vav_A 3-methyl-2-oxobutanoate 38.1 2.2E+02 0.0075 25.5 10.3 84 114-203 36-126 (275)
367 2xvy_A Chelatase, putative; me 38.0 1.4E+02 0.0048 26.2 8.9 17 82-98 123-139 (269)
368 2vef_A Dihydropteroate synthas 38.0 2.1E+02 0.0072 26.1 10.2 73 68-145 46-124 (314)
369 1qtw_A Endonuclease IV; DNA re 38.0 1.4E+02 0.0048 25.9 9.0 84 117-204 15-110 (285)
370 3bg3_A Pyruvate carboxylase, m 37.8 1.3E+02 0.0044 31.1 9.5 80 47-138 260-341 (718)
371 2ojp_A DHDPS, dihydrodipicolin 37.8 1.3E+02 0.0045 27.0 8.8 99 68-179 35-137 (292)
372 1x7f_A Outer surface protein; 37.5 30 0.001 32.8 4.4 86 106-202 29-122 (385)
373 1o66_A 3-methyl-2-oxobutanoate 37.3 2.1E+02 0.0072 25.6 9.7 87 113-203 23-115 (275)
374 2r91_A 2-keto-3-deoxy-(6-phosp 37.2 2.2E+02 0.0077 25.3 13.4 96 119-236 24-119 (286)
375 1x7f_A Outer surface protein; 36.9 33 0.0011 32.5 4.5 119 85-245 74-200 (385)
376 3gk0_A PNP synthase, pyridoxin 36.5 86 0.0029 28.1 6.8 88 104-204 95-184 (278)
377 1p6r_A Penicillinase repressor 36.4 61 0.0021 22.6 5.1 36 332-367 21-60 (82)
378 3l0g_A Nicotinate-nucleotide p 36.4 19 0.00066 32.8 2.8 56 68-137 227-282 (300)
379 2dqw_A Dihydropteroate synthas 36.4 2.4E+02 0.0083 25.4 11.5 69 171-246 124-194 (294)
380 3na8_A Putative dihydrodipicol 36.3 2.5E+02 0.0084 25.5 11.4 76 119-203 50-126 (315)
381 3erp_A Putative oxidoreductase 36.3 1.1E+02 0.0036 28.4 8.1 58 181-252 133-192 (353)
382 1ydn_A Hydroxymethylglutaryl-C 36.2 1.6E+02 0.0054 26.3 9.1 62 69-135 169-232 (295)
383 2vg0_A Short-chain Z-isoprenyl 36.2 61 0.0021 28.2 5.9 50 181-240 32-81 (227)
384 3aal_A Probable endonuclease 4 36.1 54 0.0019 29.3 5.9 17 118-134 57-73 (303)
385 2di3_A Bacterial regulatory pr 36.1 58 0.002 28.1 5.9 41 335-375 28-74 (239)
386 1o5l_A Transcriptional regulat 35.8 8 0.00027 32.8 0.1 43 335-377 165-207 (213)
387 1tz9_A Mannonate dehydratase; 35.8 1.1E+02 0.0037 28.3 8.1 78 116-202 23-114 (367)
388 1ccw_A Protein (glutamate muta 35.6 29 0.00097 27.5 3.4 72 117-200 44-116 (137)
389 2y88_A Phosphoribosyl isomeras 35.4 29 0.001 30.1 3.8 99 89-206 64-172 (244)
390 2bp1_A Aflatoxin B1 aldehyde r 35.2 1.6E+02 0.0055 27.2 9.2 60 179-252 114-175 (360)
391 3ovp_A Ribulose-phosphate 3-ep 35.1 1.2E+02 0.0042 26.1 7.8 110 69-211 33-147 (228)
392 2pfu_A Biopolymer transport EX 35.1 50 0.0017 24.1 4.6 61 71-137 31-94 (99)
393 2igp_A Retinoblastoma-associat 35.0 1.6E+02 0.0053 22.8 8.9 103 47-165 13-115 (120)
394 2nuw_A 2-keto-3-deoxygluconate 34.8 2.5E+02 0.0084 25.0 13.1 101 114-236 16-120 (288)
395 1ur4_A Galactanase; hydrolase, 34.8 51 0.0017 31.4 5.6 130 117-254 51-206 (399)
396 1w3i_A EDA, 2-keto-3-deoxy glu 34.8 2.5E+02 0.0085 25.1 13.0 71 122-203 28-98 (293)
397 1uly_A Hypothetical protein PH 34.7 89 0.0031 26.2 6.7 42 325-367 25-66 (192)
398 3daq_A DHDPS, dihydrodipicolin 34.6 2.5E+02 0.0085 25.1 12.1 99 119-238 28-127 (292)
399 1m3u_A 3-methyl-2-oxobutanoate 34.5 1.7E+02 0.0059 26.0 8.7 85 113-202 23-113 (264)
400 3i4e_A Isocitrate lyase; struc 34.4 1.2E+02 0.0041 29.2 8.0 66 68-140 283-358 (439)
401 2f6u_A GGGPS, (S)-3-O-geranylg 34.4 2.3E+02 0.0079 24.6 10.2 78 107-209 12-90 (234)
402 1s2w_A Phosphoenolpyruvate pho 34.3 1.1E+02 0.0037 27.8 7.5 85 113-204 25-115 (295)
403 4h8e_A Undecaprenyl pyrophosph 34.1 70 0.0024 28.4 6.0 30 180-209 52-81 (256)
404 2hk0_A D-psicose 3-epimerase; 34.0 2E+02 0.007 25.4 9.5 76 117-203 40-127 (309)
405 3eau_A Voltage-gated potassium 33.8 1.4E+02 0.0049 26.9 8.5 59 180-252 97-157 (327)
406 3cpr_A Dihydrodipicolinate syn 33.8 2.6E+02 0.009 25.1 12.9 102 114-236 33-139 (304)
407 3ezx_A MMCP 1, monomethylamine 33.8 76 0.0026 27.2 6.2 89 67-164 119-213 (215)
408 2ekc_A AQ_1548, tryptophan syn 33.7 2.4E+02 0.0083 24.7 11.2 87 117-205 34-131 (262)
409 2pjp_A Selenocysteine-specific 33.7 1E+02 0.0035 23.5 6.4 53 321-374 8-61 (121)
410 1lva_A Selenocysteine-specific 33.6 1.1E+02 0.0037 27.0 7.3 46 330-375 83-130 (258)
411 2v9d_A YAGE; dihydrodipicolini 33.6 2.9E+02 0.0098 25.4 12.4 51 151-203 82-133 (343)
412 2rfg_A Dihydrodipicolinate syn 33.4 63 0.0022 29.3 5.8 113 54-179 20-136 (297)
413 1sfu_A 34L protein; protein/Z- 33.2 1.2E+02 0.004 21.5 5.8 44 326-369 21-64 (75)
414 1vpx_A Protein (transaldolase 33.1 1E+02 0.0035 26.9 6.8 75 105-205 65-143 (230)
415 3l21_A DHDPS, dihydrodipicolin 33.1 2.7E+02 0.0093 25.0 12.2 81 114-203 32-117 (304)
416 2qiw_A PEP phosphonomutase; st 33.0 1.9E+02 0.0065 25.5 8.8 115 112-243 25-145 (255)
417 3gwz_A MMCR; methyltransferase 32.8 35 0.0012 31.8 4.1 47 334-380 71-119 (369)
418 3l55_A B-1,4-endoglucanase/cel 32.8 2.5E+02 0.0086 25.8 10.1 121 114-242 52-197 (353)
419 1z05_A Transcriptional regulat 32.8 67 0.0023 30.6 6.2 46 323-368 42-87 (429)
420 3chv_A Prokaryotic domain of u 32.7 2.7E+02 0.0093 24.9 10.0 90 68-165 49-141 (284)
421 1z6r_A MLC protein; transcript 32.7 64 0.0022 30.4 6.0 45 324-368 20-64 (406)
422 1qpo_A Quinolinate acid phosph 32.6 2.7E+02 0.0093 24.9 12.0 92 87-206 181-272 (284)
423 1mw9_X DNA topoisomerase I; de 32.4 46 0.0016 33.5 5.1 37 351-387 497-533 (592)
424 2v9d_A YAGE; dihydrodipicolini 32.4 88 0.003 29.0 6.7 97 68-179 65-167 (343)
425 3fzv_A Probable transcriptiona 32.2 36 0.0012 29.9 4.0 51 336-386 20-74 (306)
426 1qpo_A Quinolinate acid phosph 32.2 41 0.0014 30.4 4.2 57 68-135 214-270 (284)
427 2zkz_A Transcriptional repress 32.1 1.2E+02 0.0042 22.0 6.4 49 332-381 39-91 (99)
428 1xky_A Dihydrodipicolinate syn 31.9 2.8E+02 0.0096 24.9 13.2 81 114-203 29-114 (301)
429 2vg3_A Undecaprenyl pyrophosph 31.9 79 0.0027 28.6 6.0 28 181-208 84-111 (284)
430 2va8_A SSO2462, SKI2-type heli 31.9 1.3E+02 0.0044 30.6 8.6 33 350-382 472-504 (715)
431 1v4r_A Transcriptional repress 31.8 22 0.00076 26.4 2.0 41 336-376 37-78 (102)
432 2zvr_A Uncharacterized protein 31.8 1E+02 0.0035 27.1 7.0 15 120-134 74-88 (290)
433 2d2r_A Undecaprenyl pyrophosph 31.8 69 0.0024 28.3 5.5 28 181-208 44-71 (245)
434 1jub_A Dihydroorotate dehydrog 31.7 1.1E+02 0.0037 27.6 7.2 81 117-205 109-194 (311)
435 3edp_A LIN2111 protein; APC883 31.5 82 0.0028 27.3 6.1 41 336-376 35-76 (236)
436 3gnn_A Nicotinate-nucleotide p 31.5 46 0.0016 30.3 4.5 56 68-137 229-284 (298)
437 2k4b_A Transcriptional regulat 31.4 44 0.0015 24.9 3.6 36 332-367 47-86 (99)
438 2xsa_A Ogoga, hyaluronoglucosa 31.2 1.8E+02 0.0061 28.0 8.7 86 117-204 20-114 (447)
439 3mcm_A 2-amino-4-hydroxy-6-hyd 31.0 1.8E+02 0.0061 28.0 8.7 30 182-216 343-374 (442)
440 3ngf_A AP endonuclease, family 30.9 1.8E+02 0.0062 25.1 8.4 73 117-203 26-113 (269)
441 1vli_A Spore coat polysacchari 30.6 3.5E+02 0.012 25.5 10.7 92 82-202 98-190 (385)
442 3lmm_A Uncharacterized protein 30.5 68 0.0023 32.2 6.0 52 325-376 435-491 (583)
443 1o4u_A Type II quinolic acid p 30.4 31 0.001 31.3 3.1 57 68-135 213-269 (285)
444 3gk0_A PNP synthase, pyridoxin 30.3 1.5E+02 0.0051 26.5 7.4 88 82-185 139-231 (278)
445 3m5v_A DHDPS, dihydrodipicolin 30.3 3E+02 0.01 24.6 13.0 76 120-203 34-110 (301)
446 3tdu_C Cullin-1, CUL-1; E2:E3, 30.2 54 0.0018 23.3 3.7 29 342-370 41-69 (77)
447 2r91_A 2-keto-3-deoxy-(6-phosp 30.2 2E+02 0.0069 25.6 8.7 95 68-179 32-132 (286)
448 1lbq_A Ferrochelatase; rossman 30.1 1.6E+02 0.0056 27.4 8.2 93 46-143 171-282 (362)
449 3eet_A Putative GNTR-family tr 29.9 1.1E+02 0.0038 27.2 6.8 39 336-374 55-94 (272)
450 1q7z_A 5-methyltetrahydrofolat 29.9 3.3E+02 0.011 27.1 10.8 119 68-196 353-499 (566)
451 2qlz_A Transcription factor PF 29.9 76 0.0026 27.6 5.5 46 331-376 175-221 (232)
452 2vc6_A MOSA, dihydrodipicolina 29.9 79 0.0027 28.5 5.8 113 54-179 20-136 (292)
453 3qho_A Endoglucanase, 458AA lo 29.8 1.9E+02 0.0064 27.9 8.8 126 117-244 87-246 (458)
454 2b7n_A Probable nicotinate-nuc 29.8 41 0.0014 30.2 3.8 56 69-135 203-258 (273)
455 2gai_A DNA topoisomerase I; zi 29.5 50 0.0017 33.6 4.8 37 351-387 465-501 (633)
456 2ehh_A DHDPS, dihydrodipicolin 29.5 3E+02 0.01 24.5 13.2 73 122-203 29-102 (294)
457 3paj_A Nicotinate-nucleotide p 29.3 48 0.0016 30.6 4.2 54 68-135 251-304 (320)
458 3b4u_A Dihydrodipicolinate syn 29.2 3.1E+02 0.011 24.5 12.3 74 121-203 31-105 (294)
459 3l4g_A Phenylalanyl-tRNA synth 29.1 12 0.0004 37.1 0.0 49 334-382 20-72 (508)
460 3noy_A 4-hydroxy-3-methylbut-2 29.1 3.1E+02 0.011 25.5 9.6 79 101-204 29-113 (366)
461 2ojp_A DHDPS, dihydrodipicolin 28.8 3.1E+02 0.011 24.4 10.9 50 151-202 52-102 (292)
462 1o5k_A DHDPS, dihydrodipicolin 28.8 3.2E+02 0.011 24.5 11.6 30 173-202 84-113 (306)
463 1s2w_A Phosphoenolpyruvate pho 28.8 37 0.0013 30.9 3.4 61 67-138 182-242 (295)
464 3tqv_A Nicotinate-nucleotide p 28.7 37 0.0013 30.8 3.3 54 68-135 218-271 (287)
465 2w48_A Sorbitol operon regulat 28.7 1.3E+02 0.0043 27.3 7.1 41 329-369 16-57 (315)
466 1f8m_A Isocitrate lyase, ICL; 28.7 1.1E+02 0.0038 29.4 6.7 65 68-139 279-353 (429)
467 3cuq_B Vacuolar protein-sortin 28.7 97 0.0033 26.7 5.9 37 332-368 166-202 (218)
468 2kdx_A HYPA, hydrogenase/ureas 28.5 1.2E+02 0.004 23.2 5.9 63 50-112 9-71 (119)
469 1thf_D HISF protein; thermophI 28.5 95 0.0033 26.8 6.0 120 68-205 43-173 (253)
470 4dpp_A DHDPS 2, dihydrodipicol 28.5 3.6E+02 0.012 25.0 11.5 102 114-236 76-182 (360)
471 3si9_A DHDPS, dihydrodipicolin 28.4 3.3E+02 0.011 24.6 12.5 75 120-203 49-124 (315)
472 3a43_A HYPD, hydrogenase nicke 28.3 1.4E+02 0.0046 23.7 6.3 63 50-113 7-69 (139)
473 3d0c_A Dihydrodipicolinate syn 28.2 3.3E+02 0.011 24.5 10.3 80 114-203 29-113 (314)
474 1viz_A PCRB protein homolog; s 28.1 3E+02 0.01 23.9 9.2 48 107-165 12-60 (240)
475 1h5y_A HISF; histidine biosynt 28.0 39 0.0013 29.1 3.3 104 86-207 64-178 (253)
476 4ayb_P DNA-directed RNA polyme 28.0 21 0.00073 22.8 1.1 12 28-39 24-35 (48)
477 2rkh_A Putative APHA-like tran 27.9 29 0.00098 29.2 2.3 36 351-386 47-94 (180)
478 3qze_A DHDPS, dihydrodipicolin 27.8 3.4E+02 0.012 24.5 12.0 102 114-236 40-146 (314)
479 3u0h_A Xylose isomerase domain 27.8 34 0.0012 29.9 3.0 78 117-202 19-103 (281)
480 2pi2_A Replication protein A 3 27.8 13 0.00043 33.5 0.0 44 333-376 223-269 (270)
481 1fp2_A Isoflavone O-methyltran 27.7 49 0.0017 30.4 4.1 48 334-381 51-104 (352)
482 3fx3_A Cyclic nucleotide-bindi 27.7 1.4E+02 0.0046 25.1 6.8 44 335-379 179-222 (237)
483 2wv0_A YVOA, HTH-type transcri 27.7 1.2E+02 0.004 26.4 6.4 40 336-375 36-76 (243)
484 2g0w_A LMO2234 protein; putati 27.5 1E+02 0.0035 27.3 6.2 15 119-133 73-87 (296)
485 1m5w_A Pyridoxal phosphate bio 27.5 1.6E+02 0.0055 25.8 7.0 92 83-185 112-203 (243)
486 3flu_A DHDPS, dihydrodipicolin 27.4 3.3E+02 0.011 24.3 13.0 102 114-236 24-130 (297)
487 3p9c_A Caffeic acid O-methyltr 27.3 44 0.0015 31.1 3.7 48 334-381 56-117 (364)
488 2wkj_A N-acetylneuraminate lya 27.3 3.4E+02 0.012 24.3 12.7 103 114-237 28-135 (303)
489 2cc0_A Acetyl-xylan esterase; 27.3 1.6E+02 0.0055 24.3 7.0 82 114-206 105-186 (195)
490 3s5o_A 4-hydroxy-2-oxoglutarat 27.3 1.3E+02 0.0046 27.1 7.0 101 67-180 47-153 (307)
491 3bwg_A Uncharacterized HTH-typ 27.2 1.2E+02 0.004 26.3 6.3 39 336-374 31-70 (239)
492 3apt_A Methylenetetrahydrofola 27.2 3.5E+02 0.012 24.4 11.0 88 104-204 13-107 (310)
493 1ht6_A AMY1, alpha-amylase iso 27.2 50 0.0017 31.2 4.2 61 118-179 25-95 (405)
494 1hqc_A RUVB; extended AAA-ATPa 27.0 1.7E+02 0.0059 25.9 7.7 49 334-382 264-313 (324)
495 3b0p_A TRNA-dihydrouridine syn 27.0 3.7E+02 0.013 24.6 12.2 129 55-202 70-224 (350)
496 3sgv_B Undecaprenyl pyrophosph 26.9 62 0.0021 28.7 4.3 30 180-209 45-74 (253)
497 2g9w_A Conserved hypothetical 26.8 1.1E+02 0.0036 23.8 5.5 47 332-378 22-78 (138)
498 3u5c_K 40S ribosomal protein S 26.7 98 0.0034 23.4 4.7 34 351-384 42-79 (105)
499 3fa4_A 2,3-dimethylmalate lyas 26.6 2.5E+02 0.0086 25.4 8.5 120 114-242 25-152 (302)
500 3h5d_A DHDPS, dihydrodipicolin 26.6 1.2E+02 0.0043 27.5 6.6 112 55-179 28-144 (311)
No 1
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=100.00 E-value=1e-74 Score=580.92 Aligned_cols=373 Identities=22% Similarity=0.395 Sum_probs=338.1
Q ss_pred CCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHH
Q psy2383 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKN 93 (391)
Q Consensus 14 ~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~ 93 (391)
..++++|||||||+.+|.||++++........+.+|++.|++||+...+.+....+.+||||||||++++++.+.++++.
T Consensus 50 ~~~~~lYihIpfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~~~l~~ll~~ 129 (457)
T 1olt_A 50 ERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKL 129 (457)
T ss_dssp TSCEEEEEEECEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCHHHHHHHHHH
Confidence 45789999999999999999998765433345678999999999987665544569999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEe
Q psy2383 94 IKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLD 172 (391)
Q Consensus 94 i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~d 172 (391)
+++.|++.++.+|++|+||++++++.++.|+++|++|||+||||+++++|+.|+|+|+.+++.++++.++++ +.++++|
T Consensus 130 i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~d 209 (457)
T 1olt_A 130 LRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNID 209 (457)
T ss_dssp HHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 999988777789999999999999999999999999999999999999999999999999999999999999 8889999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP--PLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~--~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
+|+|+||||.++|.++++.+.+++|+||++|+|++.|||+..++. +..+|++++..+|+..+.+.|.++||.+|++++
T Consensus 210 lI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 289 (457)
T 1olt_A 210 LIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDH 289 (457)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEEETTE
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeEEEech
Confidence 999999999999999999999999999999999999999876532 235789999999999999999999999999999
Q ss_pred cccCCcc---ch-------hhhhhhc--CCcEEEeCcCccccccCCCceEEEeecCChHHHHHHHhcC-CCcceeeecCH
Q psy2383 251 YSKTGYE---SQ-------HNLNYWK--FGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSG-NSIAKSKKIEK 317 (391)
Q Consensus 251 fa~~g~~---~~-------~n~~yw~--~~~~lG~G~gA~s~~~~~~~~~r~~n~~~~~~y~~~~~~~-~~~~~~~~l~~ 317 (391)
||+|+.+ |+ ||..||. ..+|+|||+||+|++++ .+++|.+++++|++.++++ .|+...+.++.
T Consensus 290 fa~~~~~~~~~~~~~~~~r~~~~Y~~~~~~~~lG~G~gA~s~~~~----~~~~n~~~~~~Y~~~i~~~~~~~~~~~~l~~ 365 (457)
T 1olt_A 290 FARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD----CYAQNQKELKQYYQQVDEQGNALWRGIALTR 365 (457)
T ss_dssp EECTTSHHHHHHHHTCCEECSSCEESCCSCEEEEESTTCEEEETT----EEEEECSSHHHHHHHHHHHSCCEEEEEECCH
T ss_pred hcCCCchhhhHHhhcchhhcccccccCCCCeEEEEccceeecCCC----CEEEecCCHHHHHHHHhcCCCceeeeeeCCH
Confidence 9999986 44 4567885 68999999999999973 5889999999999999875 68888899999
Q ss_pred hhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHH-H---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHHccc
Q psy2383 318 KCLIFEFMLNALRLKDGFSPNLFFERTGINIKII-E---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 318 ~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~-~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
++++.|.+|++||+..|+|.+.|.++||.++.+. . +.|+.|++.||++.++++++||++|++++|+|+..|.+
T Consensus 366 ~~~~~~~~~~~Lr~~~g~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~gll~~~~~~~~lT~~G~~~~~~i~~~f~~ 442 (457)
T 1olt_A 366 DDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDT 442 (457)
T ss_dssp HHHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEEECSSEEEECTTTGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEECCEEEECHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997542 2 55789999999999999999999999999999998864
No 2
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.97 E-value=1.2e-30 Score=254.68 Aligned_cols=253 Identities=12% Similarity=0.080 Sum_probs=200.7
Q ss_pred eeEeccCCCCCCCCCCCCCcccccC-cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCC--CCCCCHHHHHHHHHHH
Q psy2383 18 SLYIHFPWCIKKCPYCDFHSYEIKK-NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT--PSLISDTGLDYLLKNI 94 (391)
Q Consensus 18 ~lYihiPfC~~~C~yC~~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGt--ps~l~~~~l~~ll~~i 94 (391)
.+||+.|+|+.+|.||+++.....+ ........+.++++++... ..+++.|+|+||+ |+.++.+.+.++++.+
T Consensus 68 ~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~----~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~i 143 (369)
T 1r30_A 68 LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAK----AAGSTRFCMGAAWKNPHERDMPYLEQMVQGV 143 (369)
T ss_dssp EEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHH----HTTCSEEEEEECCSSCCTTTHHHHHHHHHHH
T ss_pred EEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHH----HcCCcEEEEEeCCCCCCcCCHHHHHHHHHHH
Confidence 4677889999999999998753211 1111123455555555432 2357889998876 8888889999999999
Q ss_pred HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE
Q psy2383 95 KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL 173 (391)
Q Consensus 95 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl 173 (391)
++. +.+++ ++++.++++.++.|+++|++++++|+|| ++++++.++|.++.+++.++++.++++ +. +++++
T Consensus 144 k~~-----g~~i~--~t~G~l~~e~l~~L~~aGvd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~ 214 (369)
T 1r30_A 144 KAM-----GLEAC--MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIK-VCSGG 214 (369)
T ss_dssp HHT-----TSEEE--EECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHHHCE-EECCE
T ss_pred HHc-----CCeEE--EecCCCCHHHHHHHHHCCCCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCe-eeeee
Confidence 874 24666 4788899999999999999999999999 999999999999999999999999999 84 99999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcC--CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceeccccc
Q psy2383 174 IYALPNQTLSELMLDLNYAIQYS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251 (391)
Q Consensus 174 I~GlPgqt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~f 251 (391)
|+|+ |||.+++.++++++.+++ |++|+++.|.|.|||++.... .++.++..+++..++..|...+
T Consensus 215 I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~---~~~~~~~~~~~~~~r~~l~~~~--------- 281 (369)
T 1r30_A 215 IVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADND---DVDAFDFIRTIAVARIMMPTSY--------- 281 (369)
T ss_dssp EECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCC---CCCHHHHHHHHHHHHHHCTTSE---------
T ss_pred EeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCC---CCCHHHHHHHHHHHHHhCCCCc---------
Confidence 9999 999999999999999998 899999999999999998653 4788889999998888876543
Q ss_pred ccCCccchhhhhhhcC----CcEEEeCcCccccccCCCceEEEeec--CChHHHHHHHhc-CC
Q psy2383 252 SKTGYESQHNLNYWKF----GDYLGIGAGSHSKLSFPNYIIRQIRY--KNPNIYLKNIFS-GN 307 (391)
Q Consensus 252 a~~g~~~~~n~~yw~~----~~~lG~G~gA~s~~~~~~~~~r~~n~--~~~~~y~~~~~~-~~ 307 (391)
.|+..+|.. .+++|||+||.|.+.+ .++.++ .+.++|++.+.. |.
T Consensus 282 -------i~i~~~~~~l~~~~~~~~l~~Gan~~~~g----~~~~t~~~~~~~~~~~~i~~~g~ 333 (369)
T 1r30_A 282 -------VRLSAGREQMNEQTQAMCFMAGANSIFYG----CKLLTTPNPEEDKDLQLFRKLGL 333 (369)
T ss_dssp -------EEEESSGGGSCHHHHHHHHHHTCCEEECS----SBSSSSBCCCHHHHHHHHHHTTC
T ss_pred -------eEeecchhhcChHHHHHHhhCCCceEEeC----CeeeCCCCCCHHHHHHHHHHcCC
Confidence 123345542 4688999999998763 122222 567899999876 53
No 3
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.96 E-value=1.9e-29 Score=239.66 Aligned_cols=210 Identities=16% Similarity=0.230 Sum_probs=150.0
Q ss_pred CCceeEecc-CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCC-----HHHHH
Q psy2383 15 PPLSLYIHF-PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLIS-----DTGLD 88 (391)
Q Consensus 15 ~~~~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~-----~~~l~ 88 (391)
++..+||+| +.|+++|+||.++...++ .+.++++.+++|++...+ .+++.|.|.|++++... ...+.
T Consensus 2 ~~~~~~v~is~GC~~~C~fC~~~~~~g~---~r~r~~e~i~~ei~~l~~----~G~~ei~l~g~~~~~yG~~~~~~~~l~ 74 (304)
T 2qgq_A 2 ERPYAYVKISDGCDRGCTFCSIPSFKGS---LRSRSIEDITREVEDLLK----EGKKEIILVAQDTTSYGIDLYRKQALP 74 (304)
T ss_dssp CCSEEEEESBCCC-------------CC---CCBCCHHHHHHHHHHHHH----TTCCEEEEECTTGGGTTHHHHSSCCHH
T ss_pred CCEEEEEEECCCCCCcCccCCccccCCC---ceeeCHHHHHHHHHHHHH----CCCcEEEEEeEcccccCCCCCcHHHHH
Confidence 456899999 789999999998776432 245678899999987543 24677888776655432 24688
Q ss_pred HHHHHHHHhCCCCCCcEEEE-eeCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 89 YLLKNIKKLLLFKKNISITL-EANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~-e~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
+|++.+++..++ ..+.+ +++|..++++.++.|+++| +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 75 ~Ll~~l~~~~gi---~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~ 151 (304)
T 2qgq_A 75 DLLRRLNSLNGE---FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRER 151 (304)
T ss_dssp HHHHHHHTSSSS---CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---cEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Confidence 999998875332 23444 5799999999999999999 99999999999999999999999999999999999995
Q ss_pred ---cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 166 ---FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 166 ---~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
+ .+++|+|+|+||||.+++.++++++.+++++++.+|++++.|||++++... .++++...+.+....+.
T Consensus 152 ~~gi-~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~--~v~~~~~~~r~~~l~~~ 223 (304)
T 2qgq_A 152 FPDA-VLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKE--KVDPEMAKRRQEELLLL 223 (304)
T ss_dssp CTTC-EEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-------------CCCHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcC--CCCHHHHHHHHHHHHHH
Confidence 4 378999999999999999999999999999999999999999999987653 34455555555544443
No 4
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.92 E-value=6e-25 Score=212.73 Aligned_cols=239 Identities=12% Similarity=0.126 Sum_probs=178.9
Q ss_pred ceeEeccCC---CCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCC-CCCC-CHHHHHHHH
Q psy2383 17 LSLYIHFPW---CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT-PSLI-SDTGLDYLL 91 (391)
Q Consensus 17 ~~lYihiPf---C~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGt-ps~l-~~~~l~~ll 91 (391)
+.++.+|++ |+.+|.||.++.... .... ....+.++++++... ..+++.|.|.||. |... +.+.+.+++
T Consensus 59 v~~~~~i~~t~~C~~~C~fC~~~~~~~-~~~~-~ls~eei~~~~~~~~----~~G~~~i~l~gGe~p~~~~~~~~~~~l~ 132 (350)
T 3t7v_A 59 VFLNCFIYFSTYCKNQCSFCYYNCRNE-INRY-RLTMEEIKETCKTLK----GAGFHMVDLTMGEDPYYYEDPNRFVELV 132 (350)
T ss_dssp EEEEEEEEEECCCCCCCTTCTTCTTSC-CCCC-BCCHHHHHHHHHHHT----TSCCSEEEEEECCCHHHHHSTHHHHHHH
T ss_pred EEEEEeeecCCCcCCCCCcCCCcCcCC-CCce-eCCHHHHHHHHHHHH----HCCCCEEEEeeCCCCccccCHHHHHHHH
Confidence 455666766 999999999876541 1111 124566666766543 2357888877765 7543 467889999
Q ss_pred HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccce
Q psy2383 92 KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFN 170 (391)
Q Consensus 92 ~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~ 170 (391)
+.+++.+++ . ++++|+.++++.++.|+++|++++++|+||+++++++.++++++.++..++++.++++ +. ++
T Consensus 133 ~~ik~~~~i----~--i~~s~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 205 (350)
T 3t7v_A 133 QIVKEELGL----P--IMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYC-VE 205 (350)
T ss_dssp HHHHHHHCS----C--EEEECSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCE-EE
T ss_pred HHHHhhcCc----e--EEEeCCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe-Ec
Confidence 999877543 3 3457888999999999999999999999999999999999999999999999999999 87 99
Q ss_pred EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 171 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 171 ~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
+++|+|+ |||.+++.++++++.+++++++.++++.|.|||+++...+ ++.++..++...++-.|... +.. ..
T Consensus 206 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~---~~~~e~l~~ia~~Rl~lp~~---~I~-a~ 277 (350)
T 3t7v_A 206 DGILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRD---KSNLSELKIISVLRLMFPKR---LIP-AS 277 (350)
T ss_dssp EEEEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCC---CCCCCHHHHHHHHHHHSTTS---BCE-EE
T ss_pred cceEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCC---CChHHHHHHHHHHHHhCCCc---Ccc-cc
Confidence 9999999 9999999999999999999999999999999999987653 44455667777777666543 222 23
Q ss_pred cccCCccchhhhhhhcCCcEEEeCcC
Q psy2383 251 YSKTGYESQHNLNYWKFGDYLGIGAG 276 (391)
Q Consensus 251 fa~~g~~~~~n~~yw~~~~~lG~G~g 276 (391)
|...|.....-...+...|+-|.-+.
T Consensus 278 ~~~~g~~~~~~~l~~Gan~~~~~~~~ 303 (350)
T 3t7v_A 278 LDLEGIDGMVLRLNAGANIVTSILPP 303 (350)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred ccccChhHHHHHHhcCCceecCCCCC
Confidence 44433322222233444555555433
No 5
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.91 E-value=1.5e-23 Score=202.68 Aligned_cols=201 Identities=16% Similarity=0.213 Sum_probs=164.4
Q ss_pred CCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKN 103 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~ 103 (391)
..|+.+|.||.+.......... ....+.++++++...+ .+++.|+|+||++..++.+.+.++++.+++. +
T Consensus 61 ~~C~~~C~fC~~~~~~~~~~~~-~ls~eei~~~i~~~~~----~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~-----~ 130 (348)
T 3iix_A 61 NVCRKNCLYCGLRRDNKNLKRY-RMTPEEIVERARLAVQ----FGAKTIVLQSGEDPYXMPDVISDIVKEIKKM-----G 130 (348)
T ss_dssp CCCSCCCTTCTTCTTCCSSCCC-BCCHHHHHHHHHHHHH----TTCSEEEEEESCCGGGTTHHHHHHHHHHHTT-----S
T ss_pred CCcCCcCccCCCCCCCCCcCce-eCCHHHHHHHHHHHHH----CCCCEEEEEeCCCCCccHHHHHHHHHHHHhc-----C
Confidence 5599999999987654321110 1234556666654322 3578899999995566778899999999875 2
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCH
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTL 182 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~ 182 (391)
..++ +++..++++.++.|+++|++++++|+||+++++++.+++.++.+++.++++.++++ +. +++.+|+|+||||.
T Consensus 131 ~~i~--~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~G~p~et~ 207 (348)
T 3iix_A 131 VAVT--LSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYE-TGAGSMVGLPGQTI 207 (348)
T ss_dssp CEEE--EECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCE-EEECBEESCTTCCH
T ss_pred ceEE--EecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCe-eccceEEeCCCCCH
Confidence 3444 66788999999999999999999999999999999999999999999999999999 86 99999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2383 183 SELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
+++.++++++.+++++++.++++.|.|||+++.... ++.++..++...++..+..
T Consensus 208 e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~---~~~~e~~~~~a~~R~~lp~ 262 (348)
T 3iix_A 208 DDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKK---GDFTLTLKMVALTRILLPD 262 (348)
T ss_dssp HHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCC---CCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCC---CCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999987543 5677777777766666544
No 6
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.76 E-value=2.7e-17 Score=150.09 Aligned_cols=219 Identities=11% Similarity=0.117 Sum_probs=155.2
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHH
Q psy2383 11 IKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYL 90 (391)
Q Consensus 11 ~~~~~~~~lYihiPfC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~l 90 (391)
...-+...+.+...-|+.+|.||.......... .....++.++++++...... +..+..|.|+||+|++ .++.+.++
T Consensus 14 ~~~~pg~~~~i~t~~Cn~~C~~C~~~~~~~~~~-~~~~~~~~i~~~i~~~~~~~-~~~~~~i~~~GGEP~l-~~~~l~~l 90 (245)
T 3c8f_A 14 TVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHG-GKEVTVEDLMKEVVTYRHFM-NASGGGVTASGGEAIL-QAEFVRDW 90 (245)
T ss_dssp CTTSSSEEEEEEESCCSCCCTTCSCGGGCCTTC-SEEECHHHHHHHHGGGHHHH-TSTTCEEEEEESCGGG-GHHHHHHH
T ss_pred ccCCCCcEEEEEeCCCCCCCCCCCCchhccccc-CccCCHHHHHHHHHHhhhhh-cCCCCeEEEECCCcCC-CHHHHHHH
Confidence 333344555566667999999998764321111 11123466777776543322 2246789999999987 66668899
Q ss_pred HHHHHHhCCCCCCcEEEEeeCCCCC-CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-ccc
Q psy2383 91 LKNIKKLLLFKKNISITLEANPSTF-EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNN 168 (391)
Q Consensus 91 l~~i~~~~~~~~~~eit~e~~p~~l-~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~ 168 (391)
++.+++. +..+++.+|...+ +.+.++.|.+. +++|++++||+++++++.+++. +.+++.++++.++++ +.
T Consensus 91 ~~~~~~~-----~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~- 162 (245)
T 3c8f_A 91 FRACKKE-----GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVK- 162 (245)
T ss_dssp HHHHHTT-----TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHc-----CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCE-
Confidence 9999874 3478999987332 77888888887 9999999999999999999654 458999999999998 75
Q ss_pred ceEeEecCCCC--CCHHHHHHHHHHHHhcCC-CeEEEecccccCCCc---ccCC---CCCCCCCHHHHHHHHHHHHHHHH
Q psy2383 169 FNLDLIYALPN--QTLSELMLDLNYAIQYSP-PHLSLYSLTIEPNTY---FFKY---PPLSMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 169 v~~dlI~GlPg--qt~e~~~~~l~~~~~l~~-~~is~y~l~~~pgT~---l~~~---~~~~~p~~~~~~~~~~~~~~~L~ 239 (391)
+.+.+++ +|| ++.+++.+.++++.++++ ..+.+.++.+.+++. +.+. .....|+.++. ..+.+.+.
T Consensus 163 v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~ 237 (245)
T 3c8f_A 163 VWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETM----ERVKGILE 237 (245)
T ss_dssp EEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHH----HHHHHHHH
T ss_pred EEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHH----HHHHHHHH
Confidence 6666555 565 678999999999999996 888888888766542 2221 11235666553 34556778
Q ss_pred HCCCce
Q psy2383 240 NNYYKN 245 (391)
Q Consensus 240 ~~Gy~~ 245 (391)
++||..
T Consensus 238 ~~G~~v 243 (245)
T 3c8f_A 238 QYGHKV 243 (245)
T ss_dssp TTTCCB
T ss_pred hcCCee
Confidence 889864
No 7
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.72 E-value=1.6e-16 Score=153.00 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=142.9
Q ss_pred CCCCCCCCCCCCcccc------cCcccHHHHHHHHHHHHHhccCcccC------------CCeeEEEE-eCCCCCCCCHH
Q psy2383 25 WCIKKCPYCDFHSYEI------KKNISEKKYLEALLIDVELSLPIILN------------RKIHTIFI-GGGTPSLISDT 85 (391)
Q Consensus 25 fC~~~C~yC~~~~~~~------~~~~~~~~y~~~l~~Ei~~~~~~~~~------------~~~~~i~~-gGGtps~l~~~ 85 (391)
.|+.+|.||..+.... ......+..++.+.+........+.+ ..+..|.| |||.|.+.+
T Consensus 80 gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~-- 157 (342)
T 2yx0_A 80 WCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP-- 157 (342)
T ss_dssp CCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST--
T ss_pred hhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh--
Confidence 5999999998754321 11122334444444333322111111 24678999 699998853
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCC--CCEEEEecCCCCHHHHHHhCC---CCCHHHHHHHHH
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIG--INRLSIGIQSFNNKYLNILGR---THDSKQAKYAIE 160 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G--v~risiGvqS~~~~~l~~l~R---~~~~~~~~~~i~ 160 (391)
.+.++++.+++. +..+++.+|+.. ++.++.|+++| ++++++++++.++++++.+.+ ..+.+++.++++
T Consensus 158 ~l~~ll~~~~~~-----g~~i~l~TNG~~--~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~ 230 (342)
T 2yx0_A 158 YMGDLVEEFHKR-----GFTTFIVTNGTI--PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLE 230 (342)
T ss_dssp THHHHHHHHHHT-----TCEEEEEECSCC--HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-----CCcEEEEcCCCc--HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 689999998874 358999999864 88899999988 999999999999999999987 467899999999
Q ss_pred HHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 161 IAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 161 ~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
.+++. +. +.+.+++ +||++.+++.+.++.+.++++++|++.++.+.++++ .+......|+.++..+++..+.+.+
T Consensus 231 ~l~~~g~~-v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~-~~l~~~~~~~~e~~~~~~~~l~~~l 306 (342)
T 2yx0_A 231 LMRDLPTR-TVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR-NRLTINNMPSHQDIREFAEALVKHL 306 (342)
T ss_dssp HHTTCSSE-EEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC-------CCCCGGGSCCHHHHHHHHHHHHTTC
T ss_pred HHHhCCCC-EEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc-ccccccCCCCHHHHHHHHHHHHHhc
Confidence 99988 65 8888887 799988889999999999999999987777765543 1111123577777777666554443
No 8
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.70 E-value=1e-15 Score=147.23 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=139.8
Q ss_pred eeEeccC-CCCCCCCCCCCCcc----c---ccCcccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHH
Q psy2383 18 SLYIHFP-WCIKKCPYCDFHSY----E---IKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDY 89 (391)
Q Consensus 18 ~lYihiP-fC~~~C~yC~~~~~----~---~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ 89 (391)
.+.|++- -|+.+|.||..... . ........+.+..+++++.. .++..|.|.||.|.+.+ .+.+
T Consensus 15 ~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~-------~g~~~i~~tGGEPll~~--~l~~ 85 (340)
T 1tv8_A 15 DLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-------LGVKKIRITGGEPLMRR--DLDV 85 (340)
T ss_dssp EEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-------TTCCEEEEESSCGGGST--THHH
T ss_pred eEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH-------CCCCEEEEeCCCccchh--hHHH
Confidence 4555554 49999999986541 1 11111222334444444432 24678999999998753 4678
Q ss_pred HHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC-CHHHHHHHHHHHHhh-cc
Q psy2383 90 LLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH-DSKQAKYAIEIAKQY-FN 167 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~-~~~~~~~~i~~~~~~-~~ 167 (391)
+++.+++... ...+++.+|+..++ +.++.|+++|+++|+++++|.++++++.+++.. +.+++.++++.++++ +
T Consensus 86 li~~~~~~~~---~~~i~i~TNG~ll~-~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~- 160 (340)
T 1tv8_A 86 LIAKLNQIDG---IEDIGLTTNGLLLK-KHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL- 160 (340)
T ss_dssp HHHHHTTCTT---CCEEEEEECSTTHH-HHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhCCC---CCeEEEEeCccchH-HHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC-
Confidence 8888776422 23899999987665 589999999999999999999999999998888 999999999999999 8
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccC
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 215 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~ 215 (391)
.+.+.+++ +||++.+++.+.++++.+++++ +.+..++|.++++.+.
T Consensus 161 ~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~ 206 (340)
T 1tv8_A 161 NVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWD 206 (340)
T ss_dssp EEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBC
T ss_pred CEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccch
Confidence 48888777 7999999999999999999997 7788888888876543
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.44 E-value=1e-12 Score=124.53 Aligned_cols=210 Identities=14% Similarity=0.091 Sum_probs=124.0
Q ss_pred CceeEeccC--CCCCCCCCCCCCcccc----------cCcccHHHHHHHHHHHHHhccCccc-------------CCCee
Q psy2383 16 PLSLYIHFP--WCIKKCPYCDFHSYEI----------KKNISEKKYLEALLIDVELSLPIIL-------------NRKIH 70 (391)
Q Consensus 16 ~~~lYihiP--fC~~~C~yC~~~~~~~----------~~~~~~~~y~~~l~~Ei~~~~~~~~-------------~~~~~ 70 (391)
+..+-+.+- -|+.+|.||..+.... ......+..++.+.++++.....+. ...+.
T Consensus 50 ~~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~ 129 (311)
T 2z2u_A 50 HRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPK 129 (311)
T ss_dssp GGEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCC
T ss_pred CCeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCC
Confidence 445666776 4999999998553111 1112234444444444332211111 12356
Q ss_pred EEEEe-CCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC
Q psy2383 71 TIFIG-GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT 149 (391)
Q Consensus 71 ~i~~g-GGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~ 149 (391)
.|.|. ||.|.+. + .+.++++.+++. +..+++.+|... ++.++.| |+++|.+++++.++++.+.+.+.
T Consensus 130 ~i~~s~gGEPll~-~-~l~~li~~~~~~-----g~~~~l~TNG~~--~~~l~~L---~~~~v~isld~~~~~~~~~i~~~ 197 (311)
T 2z2u_A 130 HVAISLSGEPTLY-P-YLDELIKIFHKN-----GFTTFVVSNGIL--TDVIEKI---EPTQLYISLDAYDLDSYRRICGG 197 (311)
T ss_dssp EEEECSSSCGGGS-T-THHHHHHHHHHT-----TCEEEEEECSCC--HHHHHHC---CCSEEEEECCCSSTTTC----CC
T ss_pred EEEEeCCcCccch-h-hHHHHHHHHHHC-----CCcEEEECCCCC--HHHHHhC---CCCEEEEEeecCCHHHHHHHhCC
Confidence 78886 8999884 3 589999998875 347888888653 5555544 88999999999999999999887
Q ss_pred --CCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHH
Q psy2383 150 --HDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDEN 227 (391)
Q Consensus 150 --~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~ 227 (391)
++.+++.++++.+++.. .+.+.++ .+||.+. ++.+.++++.+++++.|.+.++++.++++.. ......|+.++.
T Consensus 198 ~~~~~~~v~~~i~~l~~~g-~v~i~~~-~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~-~~~~~~~~~~e~ 273 (311)
T 2z2u_A 198 KKEYWESILNTLDILKEKK-RTCIRTT-LIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQKR-LKKEDMLQHDEI 273 (311)
T ss_dssp CHHHHHHHHHHHHHHTTSS-SEEEEEE-ECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------------CCCCHHHH
T ss_pred ccchHHHHHHHHHHHHhcC-CEEEEEE-EECCcch-hHHHHHHHHHHcCCCEEEEEeeEEccccccc-cccccCCCHHHH
Confidence 67888999998888764 3545443 3477666 7888888999999999999999998887632 111135676665
Q ss_pred HHHHHHHHHHHHH-CCCce
Q psy2383 228 AVMQDKITSLLKN-NYYKN 245 (391)
Q Consensus 228 ~~~~~~~~~~L~~-~Gy~~ 245 (391)
.+.... +.+ .||..
T Consensus 274 ~~~~~~----l~~~~g~~~ 288 (311)
T 2z2u_A 274 LKLAKM----LDENSSYKL 288 (311)
T ss_dssp HHHHHH----HHTSSSEEE
T ss_pred HHHHHH----HHHhcCceE
Confidence 554433 333 56654
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.34 E-value=3.4e-11 Score=118.58 Aligned_cols=171 Identities=9% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCCCCCCCCCCCCcccccC-cccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q psy2383 24 PWCIKKCPYCDFHSYEIKK-NISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKK 102 (391)
Q Consensus 24 PfC~~~C~yC~~~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~ 102 (391)
..|+.+|.||......... .......+..+++++.. ..++..|.|.||.|.+.+.+.+.++++.+++.-++
T Consensus 123 ~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~------~~gi~~V~ltGGEPll~~d~~L~~il~~l~~~~~v-- 194 (416)
T 2a5h_A 123 DMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRN------TPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHV-- 194 (416)
T ss_dssp SCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHT------CTTCCEEEEEESCTTSSCHHHHHHHHHHHHTSTTC--
T ss_pred CCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHh------cCCCcEEEEECCCCCCCCHHHHHHHHHHHHhcCCc--
Confidence 5699999999765433211 12223334444455442 13578899999999998877899999999874222
Q ss_pred CcEEEEeeC-----CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE--e
Q psy2383 103 NISITLEAN-----PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL--I 174 (391)
Q Consensus 103 ~~eit~e~~-----p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl--I 174 (391)
..+++.+| |..+|++.++.|+++ .++.+++++.+++. + + +++.++++.++++ +. +.+.. +
T Consensus 195 -~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~~e---i----~-~~v~~ai~~L~~aGi~-v~i~~vll 262 (416)
T 2a5h_A 195 -EIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHPNE---I----T-EESTRACQLLADAGVP-LGNQSVLL 262 (416)
T ss_dssp -CEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSGGG---C----C-HHHHHHHHHHHHTTCC-EEEEEECC
T ss_pred -cEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCHHH---H----h-HHHHHHHHHHHHcCCE-EEEEEEEE
Confidence 35777664 467899999999998 78999999988832 2 2 8899999999999 64 55544 3
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccC
Q psy2383 175 YALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK 215 (391)
Q Consensus 175 ~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~ 215 (391)
-|+. ++.+++.+.++++.+++++...++.+.+.+||+.++
T Consensus 263 ~GvN-d~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 263 RGVN-DCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp TTTT-CSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGC
T ss_pred CCCC-CCHHHHHHHHHHHHHcCCceEEEeecCCCCCccccc
Confidence 4663 788899999999999998877677666678887543
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.12 E-value=5.3e-09 Score=101.73 Aligned_cols=217 Identities=12% Similarity=0.157 Sum_probs=140.5
Q ss_pred ccCCCCCCceeEeccC-CCCCCCCCCCCCcccccCcccHHHHHHHHHHHHHhccCcc------cCCCeeEEEEe-CCCCC
Q psy2383 9 LYIKKLPPLSLYIHFP-WCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII------LNRKIHTIFIG-GGTPS 80 (391)
Q Consensus 9 ~~~~~~~~~~lYihiP-fC~~~C~yC~~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~------~~~~~~~i~~g-GGtps 80 (391)
+-|+.....++.|..- =|+.+|.||.-......+.. ..+.+++++......+ ++.++..|.|- ||.|.
T Consensus 107 V~i~~~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~L----t~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPL 182 (404)
T 3rfa_A 107 VYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNL----RVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 182 (404)
T ss_dssp EEEECSSCEEEECCCEEECSSCCTTCGGGTTCEEEEC----CHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGG
T ss_pred EEEecCCCceEEEEeCCCCCCcCCCCCCCCCCCCCcC----CHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcc
Confidence 3344434455565553 39999999985533211111 2334444544332222 12457777775 79997
Q ss_pred CCCHHHHHHHHHHHHHhCCCC-CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC---CCCCHHHHH
Q psy2383 81 LISDTGLDYLLKNIKKLLLFK-KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG---RTHDSKQAK 156 (391)
Q Consensus 81 ~l~~~~l~~ll~~i~~~~~~~-~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~---R~~~~~~~~ 156 (391)
+ +.+.+.++++.+++..++. +...+++++|.- + +.++.|.+.+...+.+.+.+.+++..+.+. +..+.+++.
T Consensus 183 l-n~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~-~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl 258 (404)
T 3rfa_A 183 L-NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGV-V--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFL 258 (404)
T ss_dssp G-CHHHHHHHHHHHHSTTTTCCCGGGEEEEESCC-H--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHH
T ss_pred c-CHHHHHHHHHHHHhhcCcCcCCCceEEECCCc-H--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHH
Confidence 6 6778888999888743331 112688888763 3 456777776767899999999999998875 567899999
Q ss_pred HHHHHH-Hhh-c--ccceEe--EecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHH
Q psy2383 157 YAIEIA-KQY-F--NNFNLD--LIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVM 230 (391)
Q Consensus 157 ~~i~~~-~~~-~--~~v~~d--lI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~ 230 (391)
++++.. .+. . ..+.+. +|=|+ .++.+++.+..+++..+++ +|.+-++.|.+++.+ ..|+.+...
T Consensus 259 ~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~~------~~ps~e~i~-- 328 (404)
T 3rfa_A 259 AAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY------GRSSNSRID-- 328 (404)
T ss_dssp HHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCCC------CBCCHHHHH--
T ss_pred HHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCCC------CCCCHHHHH--
Confidence 999544 343 3 024443 44444 5789999999999988864 788889988877653 235554433
Q ss_pred HHHHHHHHHHCCCce
Q psy2383 231 QDKITSLLKNNYYKN 245 (391)
Q Consensus 231 ~~~~~~~L~~~Gy~~ 245 (391)
...+.|.++|+..
T Consensus 329 --~f~~iL~~~Gi~v 341 (404)
T 3rfa_A 329 --RFSKVLMSYGFTT 341 (404)
T ss_dssp --HHHHHHHHTTCEE
T ss_pred --HHHHHHHHcCCcE
Confidence 3446788888764
No 12
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=98.79 E-value=2.1e-07 Score=80.74 Aligned_cols=132 Identities=12% Similarity=0.094 Sum_probs=103.1
Q ss_pred eEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC
Q psy2383 70 HTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT 149 (391)
Q Consensus 70 ~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~ 149 (391)
..|.|.||.|.+ .++.+.++++.+++. +..+++.+|.. ++++.++.+.+. ++.|.+.+.+.+++..+.+..
T Consensus 5 ~~v~~tGGEPll-~~~~~~~l~~~~~~~-----g~~~~l~TNG~-l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g- 75 (182)
T 3can_A 5 GGVTFCGGEPLL-HPEFLIDILKRCGQQ-----GIHRAVDTTLL-ARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD- 75 (182)
T ss_dssp CCEEECSSTGGG-SHHHHHHHHHHHHHT-----TCCEEEECTTC-CCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-
T ss_pred CEEEEEcccccC-CHHHHHHHHHHHHHC-----CCcEEEECCCC-CCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-
Confidence 457889999987 566667899988874 35789999985 788999999888 899999999999999887743
Q ss_pred CCHHHHHHHHHHHHhh-cccceEeEecCCCC--CCHHHHHHHHHHHHhc-CC-CeEEEecccccCCCc
Q psy2383 150 HDSKQAKYAIEIAKQY-FNNFNLDLIYALPN--QTLSELMLDLNYAIQY-SP-PHLSLYSLTIEPNTY 212 (391)
Q Consensus 150 ~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg--qt~e~~~~~l~~~~~l-~~-~~is~y~l~~~pgT~ 212 (391)
.+.+.+.++++.+.+. +. +.+-..+ .|| ++.+++.+.++++.++ ++ ..+.+.++.+.....
T Consensus 76 ~~~~~i~~~i~~l~~~g~~-v~i~~~v-~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 76 VPNELILKNIRRVAEADFP-YYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp SCSHHHHHHHHHHHHTTCC-EEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred CCHHHHHHHHHHHHhCCCe-EEEEEEE-ECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 4468899999999887 54 5554433 355 7889999999999999 88 899999988765543
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.52 E-value=0.0003 Score=67.20 Aligned_cols=154 Identities=9% Similarity=0.068 Sum_probs=92.2
Q ss_pred CCCCCCCCCCCcccccCc-----ccHHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHH----HHHHHHHHHH
Q psy2383 26 CIKKCPYCDFHSYEIKKN-----ISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTG----LDYLLKNIKK 96 (391)
Q Consensus 26 C~~~C~yC~~~~~~~~~~-----~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~----l~~ll~~i~~ 96 (391)
|++.|.||......+.+. ....+.++.+.+++... ......|.+|.-|..+ +.+. .+++++.+.+
T Consensus 117 C~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~-----~~~~~~i~~g~~TDpy-p~E~~~~ltr~~le~l~~ 190 (368)
T 4fhd_A 117 CMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINER-----APEITRFEAACTSDIV-GIDHLTHSLKKAIEFIGA 190 (368)
T ss_dssp CSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHH-----TTSCEEEESCSSBCHH-HHHTTTCHHHHHHHHHHH
T ss_pred CCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhc-----CCCceEEEEEcCCCcc-hhhHHHhHHHHHHHHHHh
Confidence 999999997554443211 12344444444444322 1233456566555443 3332 3455555554
Q ss_pred hCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC-CCHHHHHHHHHHHHhh-cccceEeEe
Q psy2383 97 LLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT-HDSKQAKYAIEIAKQY-FNNFNLDLI 174 (391)
Q Consensus 97 ~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~-~~~~~~~~~i~~~~~~-~~~v~~dlI 174 (391)
. +...+++-+--..++ .|..++..|-.+|++.|-+ +++.+.+-.+ -+.++-.+|++.+.++ ++ +.+-+.
T Consensus 191 ~----~~~~v~i~TKs~lid--~L~~l~~~~~v~V~~Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~aGip-v~v~ia 261 (368)
T 4fhd_A 191 T----DYGRLRFVTKYEHVD--HLLDARHNGKTRFRFSINS--RYVINHFEPGTSSFDGRLAAARKVAGAGYK-LGFVVA 261 (368)
T ss_dssp C----SSEEEEEEESCCCCG--GGTTCCCTTCEEEEEEECC--HHHHHHHCTTSCCHHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred C----CCceEEEEeCCcCHH--HHHhcCcCCceEEEEEEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHCCCe-EEEEEe
Confidence 3 234677776444443 3444555566677777744 7777777654 5888999999999999 77 655554
Q ss_pred cCCCCCCH-HHHHHHHHHHHh
Q psy2383 175 YALPNQTL-SELMLDLNYAIQ 194 (391)
Q Consensus 175 ~GlPgqt~-e~~~~~l~~~~~ 194 (391)
==+|+.+. ++..+.++.+.+
T Consensus 262 PIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 262 PIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EECCCTTHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHH
Confidence 44788765 577777776665
No 14
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.29 E-value=0.022 Score=43.35 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=46.6
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i 384 (391)
|+....+....|.+...+...++.|++.||+...++.+.||++|.-++..+
T Consensus 20 ~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~l 70 (95)
T 1r7j_A 20 GSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLEDI 70 (95)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHHH
Confidence 478889999999998888999999999999999999999999999887765
No 15
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.055 Score=43.69 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=49.6
Q ss_pred hhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHH
Q psy2383 330 RLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~ 386 (391)
....++....+.+.++++...+...++.|++.||+..+...+.||++|..+...+..
T Consensus 27 ~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~~~~~~ 83 (139)
T 2x4h_A 27 DSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYLIK 83 (139)
T ss_dssp TTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHHHHHHH
Confidence 334678999999999999888899999999999999888899999999988776543
No 16
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.74 E-value=0.026 Score=42.93 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=48.0
Q ss_pred hhhcCCCChhHH----HHHhCCCHHHHHHHHHHHHHCCCeEEc----CCeEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLF----FERTGINIKIIESKLKNAEKLGLLKRN----NKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~----~~~~~~~~~~~~~~l~~l~~~gl~~~~----~~~~~lT~~G~~~~~~i~~~ 387 (391)
+....++....+ .+..+.+...+...++.|++.||++.. ...+.||++|+-+...+...
T Consensus 17 l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~~ 83 (99)
T 1tbx_A 17 LYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTA 83 (99)
T ss_dssp HTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHHH
Confidence 333567888888 788899888888999999999999873 45789999999998877543
No 17
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.63 E-value=0.068 Score=43.36 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=51.1
Q ss_pred HHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHHH
Q psy2383 323 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 323 e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i~ 385 (391)
+.++..+....++....+.+.+|++...+...++.|++.|||... +..+.||++|..+...+.
T Consensus 11 ~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~~ 74 (142)
T 1on2_A 11 EQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLV 74 (142)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHHH
Confidence 333333334567899999999999988888999999999999876 478999999999887654
No 18
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=95.60 E-value=0.059 Score=47.40 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=48.1
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~~ 386 (391)
..++....+++..+++...+...++.|++.||++... ..+.||++|+-....+..
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH
Confidence 4567888899999999888999999999999999876 789999999999887654
No 19
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.54 E-value=0.026 Score=42.72 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=44.9
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CC---eEEeCcchHHHHHHHHHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NK---NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~---~~~lT~~G~~~~~~i~~~ 387 (391)
+....+.+..+.+...+...++.|++.|||... +. .+.||++|+-+...+...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~ 87 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSI 87 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHH
Confidence 788999999999988888999999999999432 23 499999999999887654
No 20
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=95.48 E-value=0.053 Score=50.29 Aligned_cols=108 Identities=8% Similarity=-0.044 Sum_probs=78.0
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEe--cCCCC---CCHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLI--YALPN---QTLSELML 187 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI--~GlPg---qt~e~~~~ 187 (391)
+.+.++...++|++.|.+-+-+-+....+.+++.. ..+.+.++++.+++. .. +.++++ ||-|. -+++.+.+
T Consensus 82 ~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~-v~~~l~~~~~~~~~~~~~~~~~~~ 160 (298)
T 2cw6_A 82 NLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANIS-VRGYVSCALGCPYEGKISPAKVAE 160 (298)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCE-EEEEEETTTCBTTTBSCCHHHHHH
T ss_pred CHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEEEeeCCcCCCCCHHHHHH
Confidence 57789999999999999977544455567787753 556778888888888 65 777776 55553 37899999
Q ss_pred HHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 188 DLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 188 ~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
.++.+.++|++.|.+-. |. ....+.+..++.....+.
T Consensus 161 ~~~~~~~~Ga~~i~l~D------T~-------G~~~P~~~~~lv~~l~~~ 197 (298)
T 2cw6_A 161 VTKKFYSMGCYEISLGD------TI-------GVGTPGIMKDMLSAVMQE 197 (298)
T ss_dssp HHHHHHHTTCSEEEEEE------TT-------SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecC------CC-------CCcCHHHHHHHHHHHHHh
Confidence 99999999999887763 21 123455666666655444
No 21
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=95.36 E-value=0.04 Score=37.01 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=35.0
Q ss_pred hhhcCC-CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 329 LRLKDG-FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 329 lr~~~g-~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
+|...| +|.+.|.+.||++.+++...|..|++.||+..+
T Consensus 19 Ir~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 19 IVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 566677 799999999999999999999999999999875
No 22
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.31 E-value=0.069 Score=40.42 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=48.4
Q ss_pred hhhcCCCChhHHHH-HhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFE-RTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~-~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~ 387 (391)
+..........+.+ ..+.+-..+...++.|+..||++.+++.+.||++|+-........
T Consensus 25 L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~~~Dl~LT~~G~~~l~~a~~~ 84 (95)
T 1bja_A 25 IAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSGDGLIITGEAQDIISNAATL 84 (95)
T ss_dssp HHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEETTEEEECHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecCCCCeeeCHhHHHHHHHHHHH
Confidence 44445788889999 888887778899999999999997777799999999988776543
No 23
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=95.17 E-value=0.46 Score=42.41 Aligned_cols=131 Identities=17% Similarity=0.167 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC------CCCCCHHHH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN------PSTFEIEKF 120 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~------p~~l~~e~l 120 (391)
.++++.+++-.-. -|+.+=||+||.++.+.+.+++.++..+++ ++.+..-.. -...=++.+
T Consensus 25 ~~~~~d~Le~~g~--------yID~lKfg~Gt~~l~~~~~l~eki~l~~~~-----gV~v~~GGTl~E~~~~qg~~~~yl 91 (251)
T 1qwg_A 25 PKFVEDYLKVCGD--------YIDFVKFGWGTSAVIDRDVVKEKINYYKDW-----GIKVYPGGTLFEYAYSKGKFDEFL 91 (251)
T ss_dssp HHHHHHHHHHHGG--------GCSEEEECTTGGGGSCHHHHHHHHHHHHTT-----TCEEEECHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhh--------hcceEEecCceeeecCHHHHHHHHHHHHHc-----CCeEECCcHHHHHHHHcCcHHHHH
Confidence 4566666543322 278899999999999999999999998865 344444321 012346899
Q ss_pred HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC--C----CCCHHHHHHHHHHHH
Q psy2383 121 HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL--P----NQTLSELMLDLNYAI 193 (391)
Q Consensus 121 ~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl--P----gqt~e~~~~~l~~~~ 193 (391)
+.+++.|++.|.+.-=|.+ .+.++-.+.|+.+++. +. +-..+ |- | -.+++.|.+.++..+
T Consensus 92 ~~~k~lGf~~iEiS~G~i~----------l~~~~~~~~I~~~~~~G~~-v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~L 158 (251)
T 1qwg_A 92 NECEKLGFEAVEISDGSSD----------ISLEERNNAIKRAKDNGFM-VLTEV--GKKMPDKDKQLTIDDRIKLINFDL 158 (251)
T ss_dssp HHHHHHTCCEEEECCSSSC----------CCHHHHHHHHHHHHHTTCE-EEEEE--CCSSHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCccc----------CCHHHHHHHHHHHHHCCCE-Eeeec--cccCCcccCCCCHHHHHHHHHHHH
Confidence 9999999999888765543 4567778899999998 75 44433 43 2 258899999999999
Q ss_pred hcCCCeEEEe
Q psy2383 194 QYSPPHLSLY 203 (391)
Q Consensus 194 ~l~~~~is~y 203 (391)
+.|++.|-+=
T Consensus 159 eAGA~~ViiE 168 (251)
T 1qwg_A 159 DAGADYVIIE 168 (251)
T ss_dssp HHTCSEEEEC
T ss_pred HCCCcEEEEe
Confidence 9999988443
No 24
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.16 E-value=0.052 Score=44.14 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=54.5
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-------CCeEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-------NKNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-------~~~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..+....++....+.+..+.+...+...++.|++.|||+.. ...+.||++|+-+...+..
T Consensus 37 ~l~~~~~---~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~ 113 (148)
T 3nrv_A 37 GIGMTEW---RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
T ss_dssp TCCHHHH---HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHH
Confidence 4666542 23334445568999999999999988889999999999999865 4568999999999887754
Q ss_pred H
Q psy2383 387 I 387 (391)
Q Consensus 387 ~ 387 (391)
.
T Consensus 114 ~ 114 (148)
T 3nrv_A 114 F 114 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=95.15 E-value=0.21 Score=46.15 Aligned_cols=97 Identities=10% Similarity=0.064 Sum_probs=68.5
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHH-HHhCCCC--CHHHHHHHHHHHHhh-cccceEeEe--c
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL-NILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLI--Y 175 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l-~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI--~ 175 (391)
++..+.+-+ | +.+.++...++|++.|.+-+ +.++... ..+++.. +.+.+.++++.+++. .. +...+. +
T Consensus 71 ~~~~v~~l~-~---n~~~i~~a~~~G~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~-V~~~l~~~~ 144 (295)
T 1ydn_A 71 DGVRYSVLV-P---NMKGYEAAAAAHADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAINDGLA-IRGYVSCVV 144 (295)
T ss_dssp SSSEEEEEC-S---SHHHHHHHHHTTCSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSS
T ss_pred CCCEEEEEe-C---CHHHHHHHHHCCCCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 356676554 3 57888999999999998866 3455544 3455432 445566778888888 55 665555 5
Q ss_pred CCCC---CCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 176 ALPN---QTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 176 GlPg---qt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
|-|. -+++.+.+.++.+.+.|++.|.+..
T Consensus 145 ~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~D 176 (295)
T 1ydn_A 145 ECPYDGPVTPQAVASVTEQLFSLGCHEVSLGD 176 (295)
T ss_dssp EETTTEECCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cCCcCCCCCHHHHHHHHHHHHhcCCCEEEecC
Confidence 5553 4789999999999999999988773
No 26
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.13 E-value=0.075 Score=43.06 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=49.8
Q ss_pred HhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 327 NALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 327 ~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
..|....++....+.+..+.+...+...++.|++.|||+... -.+.||++|+-+...+..
T Consensus 38 ~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 104 (145)
T 3g3z_A 38 YTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTE 104 (145)
T ss_dssp HHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHH
Confidence 334445689999999999999888899999999999999743 259999999998877654
No 27
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.08 E-value=0.061 Score=43.08 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~~ 387 (391)
+....++....+.+..+.+...+...++.|++.||++...+ .+.||++|+.+...+...
T Consensus 43 l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 108 (138)
T 1jgs_A 43 IRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQL 108 (138)
T ss_dssp HHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHHH
Confidence 44456789999999999998888899999999999987522 389999999998876543
No 28
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.04 E-value=0.12 Score=42.50 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=51.5
Q ss_pred HHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHHH
Q psy2383 322 FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 322 ~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i~ 385 (391)
.+.+...+....++....+.+.+|++...+...++.|++.||+... +..+.||++|..+...+.
T Consensus 42 ~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 42 VELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHH
Confidence 3344434444467889999999999988889999999999999876 678999999998877654
No 29
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.02 E-value=0.11 Score=41.84 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=48.4
Q ss_pred hhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 330 RLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
....++....+.+..+.+...+...++.|++.|||....+ .+.||++|..+...+..
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 111 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEA 111 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHHH
Confidence 3456899999999999998888999999999999997642 39999999998877643
No 30
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.97 E-value=0.094 Score=42.46 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=49.2
Q ss_pred Hhhhh-cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 327 NALRL-KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 327 ~~lr~-~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
..+.. ..++....+.+..|++...+...++.|++.|||+...+ .+.||++|..+...+..
T Consensus 42 ~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 109 (147)
T 2hr3_A 42 GAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRA 109 (147)
T ss_dssp HHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHHH
Confidence 33444 57899999999999998888999999999999987532 38999999998887654
No 31
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.93 E-value=0.042 Score=44.45 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=50.4
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..|....++....+.+..+.+...+...++.|++.|||+...+ .+.||++|+-+...+..
T Consensus 34 ~lt~~~~---~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 34 DLTPPDV---HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp CCCHHHH---HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 4666542 2333344567899999999999987778899999999999986432 38899999998887754
Q ss_pred H
Q psy2383 387 I 387 (391)
Q Consensus 387 ~ 387 (391)
.
T Consensus 111 ~ 111 (142)
T 3ech_A 111 I 111 (142)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.91 E-value=0.067 Score=40.26 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=48.8
Q ss_pred hhhcC-CCChhHHHHHhCCCHHH-HHHHHHHHHHCCCeEEc-----CCeEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKD-GFSPNLFFERTGINIKI-IESKLKNAEKLGLLKRN-----NKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~-g~~~~~~~~~~~~~~~~-~~~~l~~l~~~gl~~~~-----~~~~~lT~~G~~~~~~i~~~ 387 (391)
+.... ++...++.+..+.+... +...++.|++.|||..+ ...+.||++|+-+...+...
T Consensus 24 l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~~ 89 (95)
T 2pg4_A 24 FEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEKC 89 (95)
T ss_dssp HHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHHH
Confidence 33444 79999999999999888 88999999999999844 13589999999999887654
No 33
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.91 E-value=0.071 Score=42.83 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=45.8
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
++....+.+..+.+...+...++.|++.|||+...+ .+.||++|..+...+..
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~ 109 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILS 109 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHHH
Confidence 789999999999998888899999999999987532 68999999988876643
No 34
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.90 E-value=0.074 Score=42.98 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=54.1
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..+....++....+.+..+++...+...++.|++.|||+... -.+.||++|+-+.+.+..
T Consensus 34 ~lt~~~~---~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 34 DVTPEQW---SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp SSCHHHH---HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHH
Confidence 3565542 222334444789999999999999888899999999999998752 358999999999887654
Q ss_pred H
Q psy2383 387 I 387 (391)
Q Consensus 387 ~ 387 (391)
.
T Consensus 111 ~ 111 (143)
T 3oop_A 111 I 111 (143)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.88 E-value=0.069 Score=44.11 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=49.1
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
|....++....+.+..+++...+...++.|++.|||+... -.+.||++|+-+...+...
T Consensus 59 l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 124 (159)
T 3s2w_A 59 LYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKI 124 (159)
T ss_dssp HHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4445788999999999999888899999999999998752 2589999999998876543
No 36
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.86 E-value=0.062 Score=44.55 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=49.8
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
.|....++....+.+..+++...+...++.|++.|||+... -.+.||++|+-+...+...
T Consensus 61 ~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 127 (161)
T 3e6m_A 61 SLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPL 127 (161)
T ss_dssp HHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHH
Confidence 34445688999999999999888899999999999999763 3599999999998877543
No 37
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.80 E-value=0.11 Score=42.61 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
+..|....++....+.+..+++...+...++.|++.|||+... -.+.||++|+.+...+..
T Consensus 49 L~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 49 LACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVA 116 (155)
T ss_dssp HHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHH
Confidence 3345555789999999999999888889999999999998753 249999999998887644
No 38
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.80 E-value=0.093 Score=42.75 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=48.6
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
+....++....+.+..+.+...+...++.|++.|||....+ .+.||++|+.+...+..
T Consensus 49 l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 113 (152)
T 3bj6_A 49 LSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRA 113 (152)
T ss_dssp HHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHHH
Confidence 44456788999999999998888899999999999998643 69999999998877643
No 39
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.75 E-value=0.071 Score=44.24 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=54.2
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..|....++....+.+..+++...+...++.|++.|||+... -.+.||++|+-+...+..
T Consensus 43 glt~~q~---~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 43 EISLPQF---TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp TCCHHHH---HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHH
Confidence 3555442 233344556789999999999998877889999999999998752 248999999999887754
Q ss_pred H
Q psy2383 387 I 387 (391)
Q Consensus 387 ~ 387 (391)
.
T Consensus 120 ~ 120 (162)
T 3k0l_A 120 V 120 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.71 E-value=0.063 Score=43.86 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=49.3
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
.|....++....+.+..+.+...+...++.|++.|||+... ..+.||++|+-+...+...
T Consensus 49 ~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 115 (149)
T 4hbl_A 49 TLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEA 115 (149)
T ss_dssp HHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHH
Confidence 34445789999999999999888899999999999998642 3589999999998877654
No 41
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.60 E-value=0.22 Score=40.87 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=47.1
Q ss_pred hhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 330 RLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
+...+.....+.+..+++...+-..++.|++.|||+... -.+.||++|+-+.+.+...
T Consensus 42 ~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 106 (151)
T 4aik_A 42 RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGV 106 (151)
T ss_dssp HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHH
Confidence 334567778899999999888889999999999998642 2599999999988877543
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.60 E-value=0.084 Score=42.60 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=48.1
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
+....++....+.+..+.+...+...++.|++.|||.... -.+.||++|..+.+.+..
T Consensus 38 l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 102 (144)
T 1lj9_A 38 VCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVR 102 (144)
T ss_dssp HHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHHH
Confidence 4445678899999999999888899999999999998752 138999999998887654
No 43
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.59 E-value=0.13 Score=41.52 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=48.8
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
.+. ..++....+.+..+.+...+...++.|++.||++...+ .+.||++|..+.+.+..
T Consensus 45 ~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~ 109 (146)
T 2gxg_A 45 ATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIE 109 (146)
T ss_dssp HHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 345 67899999999999998888999999999999987522 48999999998887654
No 44
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.58 E-value=0.099 Score=41.92 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=46.9
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
+++....+.+..+.+...+...++.|++.|||+... -.+.||++|+-+...+...
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 107 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSI 107 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHHH
Confidence 388999999999999888899999999999998752 3588999999998876543
No 45
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.58 E-value=0.14 Score=39.94 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=45.6
Q ss_pred cCCCC--hhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCcchHHHHHHHH
Q psy2383 332 KDGFS--PNLFFERT-GINIKIIESKLKNAEKLGLLKRN---NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 332 ~~g~~--~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~G~~~~~~i~ 385 (391)
..... ..++.+.. |++...+...|+.|++.|||+.. .-.+.||++|+-+...+.
T Consensus 38 ~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~ 97 (111)
T 3df8_A 38 NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLM 97 (111)
T ss_dssp SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHH
Confidence 34455 88999999 89988889999999999999987 568999999998877654
No 46
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=94.53 E-value=0.085 Score=41.28 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=47.6
Q ss_pred HHHHhhhhcCCCChhHHHHHh--CCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHH
Q psy2383 324 FMLNALRLKDGFSPNLFFERT--GINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLN 382 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~--~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~ 382 (391)
.++..|+....+....+.+.+ |.+...+...|+.|++.|||+..+ +.+.||++|+-++.
T Consensus 17 ~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 17 RILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 334445545678899999999 888888999999999999999764 46999999987764
No 47
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.46 E-value=0.083 Score=42.64 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=54.3
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..+....++....+.+..+.+...+...++.|++.|||+... -.+.||++|+-+...+..
T Consensus 33 glt~~q~---~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 109 (140)
T 3hsr_A 33 DLTYTGY---IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAE 109 (140)
T ss_dssp TCCHHHH---HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHH
T ss_pred CCCHHHH---HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHH
Confidence 3555442 233344445678899999999999888899999999999998752 368999999998887654
Q ss_pred H
Q psy2383 387 I 387 (391)
Q Consensus 387 ~ 387 (391)
.
T Consensus 110 ~ 110 (140)
T 3hsr_A 110 I 110 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.43 E-value=0.14 Score=42.71 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=47.6
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
..++....+.+..+++...+...++.|++.|||+... -.+.||++|+-+...+...
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 128 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEV 128 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4678999999999999888889999999999999763 3589999999998877543
No 49
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=94.40 E-value=0.12 Score=39.80 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=44.3
Q ss_pred cCCCChhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERT-GINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i 384 (391)
..+....++.+.. |++...+...|+.|++.|||+... -.+.||++|+-+...+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~~~ 85 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGIL 85 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHHHH
Confidence 4568889999998 999888899999999999998653 2589999998877655
No 50
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.40 E-value=0.12 Score=41.99 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=48.2
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----C---eEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----K---NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~---~~~lT~~G~~~~~~i~~~ 387 (391)
|....++....+.+..+.+...+...++.|++.|||.... . .+.||++|+.+.+.+...
T Consensus 51 l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 116 (150)
T 2rdp_A 51 LLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEK 116 (150)
T ss_dssp HHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 3335678999999999999888889999999999998742 2 389999999988876543
No 51
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=94.38 E-value=0.13 Score=44.49 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~ 386 (391)
..+....++++.|+....+...++.|.+.||++.+.+.+.||++|+-++..+..
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CEEECHHHHHHHHHHHT
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCeEECHHHHHHHHHHHH
Confidence 557778888899998888999999999999999988999999999999988764
No 52
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.34 E-value=0.091 Score=42.00 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=48.2
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----C---eEEeCcchHHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----K---NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~---~~~lT~~G~~~~~~i~~ 386 (391)
.+....++...++.+..+.+...+...++.|++.||++... . .+.||++|..+...+..
T Consensus 37 ~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~ 102 (138)
T 3bpv_A 37 RIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILK 102 (138)
T ss_dssp HHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHHH
Confidence 34445789999999999999888899999999999998742 2 28899999988876643
No 53
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.31 E-value=0.12 Score=41.65 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=48.1
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
+....++....+.+..+.+...+...++.|++.|||+... ..+.||++|..+...+..
T Consensus 42 l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~ 106 (145)
T 2a61_A 42 IYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIE 106 (145)
T ss_dssp HHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHHH
Confidence 3335689999999999999888889999999999998752 148899999998877643
No 54
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.29 E-value=0.1 Score=41.78 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=53.0
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---C----eEEeCcchHHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---K----NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~----~~~lT~~G~~~~~~i~~ 386 (391)
.++..+. .++..+....++....+.+..+.+...+...++.|++.||+.... + .+.||++|..+...+..
T Consensus 35 ~l~~~~~---~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 111 (140)
T 2nnn_A 35 GLTPTQW---AALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLA 111 (140)
T ss_dssp CCCHHHH---HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHHH
Confidence 4666542 222334345689999999999999888899999999999998741 1 38999999998877643
No 55
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.28 E-value=0.13 Score=41.80 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=45.7
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~~ 387 (391)
..++....+.+..+++...+...++.|++.|||+...+ .+.||++|+-+...+...
T Consensus 52 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 114 (150)
T 3fm5_A 52 AEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKAR 114 (150)
T ss_dssp TTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHH
Confidence 34689999999999998888999999999999986432 289999999998877543
No 56
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.16 E-value=0.13 Score=42.48 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=47.6
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
|....++....+.+..+++...+...++.|++.|||+... ..+.||++|+.+...+..
T Consensus 58 l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 122 (162)
T 2fa5_A 58 LALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAP 122 (162)
T ss_dssp HHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 4335689999999999999888889999999999998753 458999999998877643
No 57
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.07 E-value=0.13 Score=42.55 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=48.4
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
.|....++....+.+..+++...+...++.|++.|||+... ..+.||++|+.+...+..
T Consensus 60 ~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 125 (162)
T 3cjn_A 60 ILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWP 125 (162)
T ss_dssp HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 34445678899999999999888889999999999998752 238999999998877654
No 58
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.93 E-value=0.15 Score=41.74 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=48.5
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
|....++....+.+..+++...+...++.|++.|||+... -.+.||++|+.+...+...
T Consensus 53 l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 118 (154)
T 2eth_A 53 VALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSN 118 (154)
T ss_dssp HHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHHHH
Confidence 4445678999999999999888889999999999998752 2489999999998876543
No 59
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.92 E-value=0.1 Score=42.65 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=48.1
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
+....++....+.+..+.+...+...++.|++.|||+...+ .+.||++|..+...+..
T Consensus 46 l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 110 (155)
T 1s3j_A 46 LKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLA 110 (155)
T ss_dssp HHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHHH
Confidence 33346788999999999998888899999999999987633 48999999998877654
No 60
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.89 E-value=0.13 Score=44.94 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=50.2
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~~ 387 (391)
|....++....+.+..+++...+...++.|++.|||....+ .+.||++|+.+...+...
T Consensus 57 L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 57 AYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp HHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 43456889999999999998888899999999999998654 799999999999887643
No 61
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=93.88 E-value=0.17 Score=40.76 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=45.2
Q ss_pred cCCCChhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 332 KDGFSPNLFFERT-GINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 332 ~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
.......++.+.. |++...+...|+.|++.|||+... -.+.||++|+-+...+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~ 98 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVL 98 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHH
Confidence 4567889999998 888878889999999999998762 36899999998877664
No 62
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.78 E-value=0.11 Score=41.70 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=48.6
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
.+....++....+.+..+.+...+...++.|++.|||+... ..+.||++|..+...+...
T Consensus 44 ~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 110 (142)
T 2fbi_A 44 ILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGD 110 (142)
T ss_dssp HHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 34445678899999999999888889999999999998752 2388999999988876543
No 63
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=93.75 E-value=0.12 Score=41.79 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=47.3
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC--C-----eEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN--K-----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~--~-----~~~lT~~G~~~~~~i~~~ 387 (391)
+....+ ....+.+..+.+...+...++.|++.|||.... + .+.||++|+-+...+...
T Consensus 46 l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 110 (144)
T 3f3x_A 46 TSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEV 110 (144)
T ss_dssp HHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 444455 888999999999888899999999999998752 1 499999999998876543
No 64
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.64 E-value=0.17 Score=41.23 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=48.1
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE------cCC---eEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR------NNK---NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~------~~~---~~~lT~~G~~~~~~i~~ 386 (391)
|....++....+.+..+.+...+...++.|++.|||+. .+. .+.||++|..+.+.+..
T Consensus 50 l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~ 116 (154)
T 2qww_A 50 IYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTA 116 (154)
T ss_dssp HHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHh
Confidence 44456788999999999998888899999999999998 232 59999999998877643
No 65
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.62 E-value=0.21 Score=40.91 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=44.6
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC------eEEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK------NIKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~------~~~lT~~G~~~~~~i 384 (391)
..+....++.+..|++...+...|+.|++.|||+.... .+.||++|+-+...+
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l 93 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLL 93 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHH
Confidence 35688899999999998888899999999999987542 789999998776554
No 66
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.60 E-value=0.062 Score=43.33 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~ 385 (391)
.+....++....+.+..+.+...+...++.|++.||++...+ .+.||++|..+...+.
T Consensus 45 ~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 45 ILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred HHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 344456788899999999987778889999999999987644 6899999999887764
No 67
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.57 E-value=0.15 Score=42.63 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=47.6
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
|....++....+.+..+++...+...++.|++.|||+... -.+.||++|+.+...+..
T Consensus 54 L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 118 (168)
T 2nyx_A 54 LSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTE 118 (168)
T ss_dssp HHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 3335678899999999999888889999999999998742 238999999998877643
No 68
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.45 E-value=0.088 Score=41.95 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=46.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-------CCeEEeCcchHHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-------NKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-------~~~~~lT~~G~~~~~~i~~~ 387 (391)
.++....+.+..+.+...+...++.|++.|||... .-.+.||++|+-+...+...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 113 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSR 113 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 67889999999999877788999999999999863 24589999999998887654
No 69
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=93.42 E-value=0.16 Score=40.88 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=46.2
Q ss_pred HhhhhcCCCChhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHH
Q psy2383 327 NALRLKDGFSPNLFFERT-GINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 327 ~~lr~~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~ 385 (391)
..|. ..+....++.+.. |++...+...|+.|++.|||+.... .+.||++|+-+...+.
T Consensus 42 ~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 107 (131)
T 1yyv_A 42 VALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131)
T ss_dssp HHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred HHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHHH
Confidence 3444 4567888999998 7988888899999999999986532 5899999998776553
No 70
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.33 E-value=0.096 Score=41.85 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=46.9
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
+....++....+.+..+.+...+...++.|++.||+.... -.+.||++|+.+...+..
T Consensus 42 l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~ 106 (139)
T 3bja_A 42 LAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDV 106 (139)
T ss_dssp HHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHH
Confidence 4445678899999999988777888999999999998742 228899999998887654
No 71
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=93.30 E-value=0.16 Score=39.13 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=44.2
Q ss_pred cCCCChhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 332 KDGFSPNLFFERT-GINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 332 ~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
..+....++.+.. |++...+...|+.|++.|||+... -.+.||++|+-+...+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l~ 97 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHHHHH
Confidence 4567888999998 598888899999999999998653 24899999988776654
No 72
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=93.17 E-value=0.25 Score=35.99 Aligned_cols=58 Identities=19% Similarity=0.041 Sum_probs=47.7
Q ss_pred HHHHHHhhhhcCCCChhHHHHHhCCCHH-HHHHHHHHHHHCCCeEEcC---CeEEeCcchHH
Q psy2383 322 FEFMLNALRLKDGFSPNLFFERTGINIK-IIESKLKNAEKLGLLKRNN---KNIKPTSFGRY 379 (391)
Q Consensus 322 ~e~~~~~lr~~~g~~~~~~~~~~~~~~~-~~~~~l~~l~~~gl~~~~~---~~~~lT~~G~~ 379 (391)
.+.++.-|....+.....+.+..|++.. .+...|..|+++|+|...+ -.|.||++|.-
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHh
Confidence 4455555677788899999999999887 8899999999999998653 37999999964
No 73
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=93.15 E-value=0.17 Score=37.94 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=44.4
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
..++...++.+..|.+...+...++.|++.|++.... ..+.||++|.-....+..
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~ 89 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHH
Confidence 4568888999999999888899999999999998432 358899999876665543
No 74
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=93.11 E-value=0.21 Score=38.84 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCCChhHHHHHh-CCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHH
Q psy2383 333 DGFSPNLFFERT-GINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 333 ~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~ 385 (391)
.+....++.+.. |++...+...|+.|++.|||+...+ .+.||++|+-+...+.
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~~~ 94 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALS 94 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHHHH
Confidence 568899999999 9998888999999999999986532 4899999998776553
No 75
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.00 E-value=0.088 Score=43.39 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=45.7
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHH
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~ 386 (391)
...++....+.+..+.+...+...++.|++.|||+...+ .+.||++|+.+...+..
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 121 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASE 121 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHHH
Confidence 456788999999999886667889999999999987532 38999999998887654
No 76
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=92.96 E-value=0.61 Score=43.28 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHH-HHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeEe--c
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNK-YLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDLI--Y 175 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~-~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI--~ 175 (391)
++..+..-+ | +.+-++...++|++.|.+-+ +.++. ..+.+++.. ..+.+.++++.+++. .. +.+.++ |
T Consensus 73 ~~~~~~~l~-~---~~~~i~~a~~~g~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~i~~~~ 146 (307)
T 1ydo_A 73 KGVTYAALV-P---NQRGLENALEGGINEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKANLT-TRAYLSTVF 146 (307)
T ss_dssp TTCEEEEEC-C---SHHHHHHHHHHTCSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECTT
T ss_pred CCCeEEEEe-C---CHHhHHHHHhCCcCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEEEEe
Confidence 456666554 4 46678888899999999887 45554 445566542 345567788888888 54 655554 4
Q ss_pred CCCC---CCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 176 ALPN---QTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 176 GlPg---qt~e~~~~~l~~~~~l~~~~is~y 203 (391)
|-|. -+++.+.+.++.+.++|++.|.+-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 147 GCPYEKDVPIEQVIRLSEALFEFGISELSLG 177 (307)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred cCCcCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 5553 368889999999999999987665
No 77
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=92.90 E-value=0.25 Score=39.50 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=45.7
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFL 381 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~ 381 (391)
.+....++....+.+..+.+...+...++.|++.||+....+ .+.||++|..+.
T Consensus 39 ~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 39 TLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 344456799999999999998888999999999999987632 589999999887
No 78
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.86 E-value=0.32 Score=41.51 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=47.5
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~~ 387 (391)
..++....+.+..+++...+...++.|++.|||+... -.+.||++|+-+...+...
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 117 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRT 117 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4579999999999999888889999999999998742 3589999999988876543
No 79
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.77 E-value=1.2 Score=41.19 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=69.9
Q ss_pred CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC--CHHHHHHHHHHHHhh-cccceEeE--ecC
Q psy2383 102 KNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH--DSKQAKYAIEIAKQY-FNNFNLDL--IYA 176 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~--~~~~~~~~i~~~~~~-~~~v~~dl--I~G 176 (391)
++..+.+-+ | +.+.++...++|++.|.+-.=+.+-...+.+++.. ..+.+.++++.+++. .. +...+ ++|
T Consensus 75 ~~~~~~~l~-~---~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~-V~~~l~~~~~ 149 (302)
T 2ftp_A 75 PGVTYAALA-P---NLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVR-VRGYISCVLG 149 (302)
T ss_dssp TTSEEEEEC-C---SHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCE-EEEEEECTTC
T ss_pred CCCEEEEEe-C---CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEEEee
Confidence 455666554 3 67889888999999998876444555667777653 445677778888887 54 65555 455
Q ss_pred CCC---CCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 177 LPN---QTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 177 lPg---qt~e~~~~~l~~~~~l~~~~is~y 203 (391)
-|. -+++.+.+.++.+.+.|++.|.+-
T Consensus 150 ~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 150 CPYDGDVDPRQVAWVARELQQMGCYEVSLG 179 (302)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 553 368888999999999999988766
No 80
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=92.76 E-value=0.38 Score=42.54 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=45.7
Q ss_pred CCCCh--hHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHH
Q psy2383 333 DGFSP--NLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 333 ~g~~~--~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~ 385 (391)
.|+.. ..+.+..+++...+...++.|++.||++... ..+.||++|+-....+.
T Consensus 21 ~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~ 76 (230)
T 1fx7_A 21 EGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVM 76 (230)
T ss_dssp HTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHH
Confidence 36666 8899999999888899999999999999875 56999999999887664
No 81
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=92.72 E-value=0.48 Score=35.49 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=42.6
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
..++...++.+.+|++...+...|+.|++.|++....+.+.||+.|..
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~g~y~l~~~g~~ 88 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERWVVTDAGKI 88 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTTTCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCEEEECCCchH
Confidence 466899999999999988889999999999999876679999999865
No 82
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.64 E-value=0.13 Score=41.98 Aligned_cols=57 Identities=25% Similarity=0.195 Sum_probs=46.3
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDL 384 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i 384 (391)
.|....++....+.+..+++...+...++.|++.|||+...+ .+.||++|+.+...+
T Consensus 55 ~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 55 VLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred HHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 344456788999999999998888899999999999987532 599999999876543
No 83
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.59 E-value=0.085 Score=42.94 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=40.8
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcchHHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G~~~~~~i~~~ 387 (391)
.++....+.+..+.+...+...++.|++.|||+.. | -.+.||++|+-+...+...
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 117 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNI 117 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHHH
Confidence 68999999999998877788899999999999765 2 3578999999998876543
No 84
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=92.52 E-value=0.72 Score=43.37 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=90.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+++.|=+|++.-+--+.+.+..+.+... ....-++..+..-++.. + -++...++|++.|.+-+-+.+-...+.++
T Consensus 55 Gv~~IE~g~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~i~~l~~~~---~-~i~~a~~~g~~~v~i~~~~s~~~~~~~~~ 129 (337)
T 3ble_A 55 NVDRVEIASARVSKGELETVQKIMEWAA-TEQLTERIEILGFVDGN---K-TVDWIKDSGAKVLNLLTKGSLHHLEKQLG 129 (337)
T ss_dssp CCSEEEEEETTSCTTHHHHHHHHHHHHH-HTTCGGGEEEEEESSTT---H-HHHHHHHHTCCEEEEEEECSHHHHHHHTC
T ss_pred CCCEEEEeCCCCChhHHHHHHHHHhhhh-hhccCCCCeEEEEccch---h-hHHHHHHCCCCEEEEEEecCHHHHHHHhC
Confidence 5777777654321111134444444322 11111345666554321 2 68888889999999877666666677787
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEec---CCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCC
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIY---ALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSM 221 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~---GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~ 221 (391)
+.. ..+.+.++++.+++. .. +.+++.. + +.-+++.+.+.++.+.++|++.|++-- |. ..
T Consensus 130 ~s~~e~l~~~~~~v~~ak~~G~~-v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ga~~i~l~D------T~-------G~ 194 (337)
T 3ble_A 130 KTPKEFFTDVSFVIEYAIKSGLK-INVYLEDWSNG-FRNSPDYVKSLVEHLSKEHIERIFLPD------TL-------GV 194 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCE-EEEEEETHHHH-HHHCHHHHHHHHHHHHTSCCSEEEEEC------TT-------CC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCCC-CcCCHHHHHHHHHHHHHcCCCEEEEec------CC-------CC
Confidence 642 345566777777887 54 7777664 2 124678888999999999999876653 21 12
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy2383 222 PSNDENAVMQDKITSLL 238 (391)
Q Consensus 222 p~~~~~~~~~~~~~~~L 238 (391)
..+.+..+++....+.+
T Consensus 195 ~~P~~v~~lv~~l~~~~ 211 (337)
T 3ble_A 195 LSPEETFQGVDSLIQKY 211 (337)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 34556666666555443
No 85
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.44 E-value=0.42 Score=38.41 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=50.9
Q ss_pred ecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~ 385 (391)
.++..+. .++..|.... +....+.+..|.+...+...++.|++.|||+... -.+.||++|.-+...+.
T Consensus 35 ~lt~~~~---~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 35 ALTNTQE---HILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp CCCHHHH---HHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 4555442 2333344444 9999999999999888899999999999998643 35889999999888775
No 86
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.25 E-value=0.34 Score=39.52 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=45.5
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
.++....+.+..+++...+-..++.|++.|||+... -.+.||++|+-+.+.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 110 (147)
T 4b8x_A 50 GELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAATR 110 (147)
T ss_dssp GEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHHH
Confidence 358889999999999888889999999999998642 248999999998887654
No 87
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=92.24 E-value=0.21 Score=44.24 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=48.8
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----CCeEEeCcchHHHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----NKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~~~~~lT~~G~~~~~~i~~~ 387 (391)
..+++....++..+.+...+...++.|++.||+.++ ...+.||++|+.+...+...
T Consensus 25 ~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~~~~ 84 (230)
T 3cta_A 25 RAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFAD 84 (230)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHHHHH
Confidence 345778999999999988888999999999999998 89999999999998876543
No 88
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.21 E-value=0.16 Score=42.26 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i~~~ 387 (391)
.++....+.+..+++...+...++.|++.|||+...+ .+.||++|+-+...+...
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEEP 122 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHHH
Confidence 4788999999999876678889999999999987532 589999999998877543
No 89
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=91.96 E-value=0.36 Score=42.58 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=45.4
Q ss_pred CCCh--hHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHHH
Q psy2383 334 GFSP--NLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 334 g~~~--~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~~ 386 (391)
|+.. ..+.+..+++...+...++.|++.||+.... ..+.||++|+.....+..
T Consensus 22 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~ 77 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMR 77 (226)
T ss_dssp TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHHHH
Confidence 5555 8899999999888889999999999999875 569999999998877653
No 90
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=91.57 E-value=0.3 Score=39.94 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=41.3
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC------CeEEeCcchHHHHHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~------~~~~lT~~G~~~~~~i~~ 386 (391)
++...++.+..+++...+-..++.|++.|||...+ -.+.||++|+-+...+..
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~~~ 110 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVP 110 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 47889999999999888889999999999996432 248899999998877653
No 91
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=91.50 E-value=0.3 Score=39.65 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=46.8
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE----c--C---CeEEeCcchHHHHHHHHH
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR----N--N---KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~----~--~---~~~~lT~~G~~~~~~i~~ 386 (391)
...++....+.+..+.+...+...++.|++.|||.. + | -.+.||++|+-+...+..
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~ 112 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKA 112 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHH
Confidence 567899999999999987788899999999999985 2 2 348899999998887654
No 92
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.16 E-value=0.69 Score=34.86 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=47.8
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC------CeEEeCcchHHHHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~------~~~~lT~~G~~~~~~i~~~ 387 (391)
|....++....+.+..|.+...+...++.|++.|+|.... ..+.+|++|..+...+...
T Consensus 29 l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~ 93 (109)
T 1sfx_A 29 LLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSS 93 (109)
T ss_dssp HHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHH
Confidence 3334678999999999999888999999999999998642 3457899999988776543
No 93
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.08 E-value=0.61 Score=41.74 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=47.7
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCeEEeCcchHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~~~lT~~G~~~~~~i 384 (391)
|....++...++.+..|.+...+...++.|++.|+++.. ...+.||++|+.+....
T Consensus 161 L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~ 218 (244)
T 2wte_A 161 LYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLN 218 (244)
T ss_dssp HHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHH
Confidence 334568999999999999988889999999999999985 46899999999886543
No 94
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=91.00 E-value=0.071 Score=43.22 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=46.0
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-------eEEeCcchHHHHHHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-------NIKPTSFGRYFLNDL 384 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-------~~~lT~~G~~~~~~i 384 (391)
.+....++....+.+..+++...+...++.|++.|||+...+ .+.||++|..+...+
T Consensus 48 ~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 48 LLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp HHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 344446788899999999998888899999999999987532 389999999876544
No 95
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=90.93 E-value=3.3 Score=37.31 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee------CCCCCCHHH
Q psy2383 46 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA------NPSTFEIEK 119 (391)
Q Consensus 46 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~------~p~~l~~e~ 119 (391)
-.++++.+++-.-. -|+.+=||+||.++.+. +++.++..+++ ++.+..-. --...=++.
T Consensus 51 g~~~~~DlLe~ag~--------yID~lKfg~GTs~l~~~--l~ekI~l~~~~-----gV~v~~GGTlfE~~l~qg~~~~y 115 (276)
T 1u83_A 51 PLQFFKDAIAGASD--------YIDFVKFGWGTSLLTKD--LEEKISTLKEH-----DITFFFGGTLFEKYVSQKKVNEF 115 (276)
T ss_dssp CHHHHHHHHHHHGG--------GCCEEEECTTGGGGCTT--HHHHHHHHHHT-----TCEEEECHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHhhh--------hcceEEecCcchhhhHH--HHHHHHHHHHc-----CCeEeCCcHHHHHHHHcCcHHHH
Confidence 34666666543322 27889999999998776 99999988875 34444322 011134789
Q ss_pred HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCC--C----CCCHHHHHHHHHHHH
Q psy2383 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYAL--P----NQTLSELMLDLNYAI 193 (391)
Q Consensus 120 l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~Gl--P----gqt~e~~~~~l~~~~ 193 (391)
++.+++.|++.|.|.-=|.+ .+.++..+.|+.+++.|. |-..+ |- | -.+++.|.+.++..+
T Consensus 116 l~~~k~lGF~~IEISdGti~----------l~~~~~~~lI~~a~~~f~-Vl~Ev--G~K~~~~~~~~~~~~~I~~~~~dL 182 (276)
T 1u83_A 116 HRYCTYFGCEYIEISNGTLP----------MTNKEKAAYIADFSDEFL-VLSEV--GSKDAELASRQSSEEWLEYIVEDM 182 (276)
T ss_dssp HHHHHHTTCSEEEECCSSSC----------CCHHHHHHHHHHHTTTSE-EEEEC--SCCC------CCSTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCccc----------CCHHHHHHHHHHHHhhcE-Eeeec--cccCccccCCCCHHHHHHHHHHHH
Confidence 99999999998888655533 455666677777776632 22222 32 2 247799999999999
Q ss_pred hcCCCeEEE
Q psy2383 194 QYSPPHLSL 202 (391)
Q Consensus 194 ~l~~~~is~ 202 (391)
+.|++.|-+
T Consensus 183 eAGA~~Vii 191 (276)
T 1u83_A 183 EAGAEKVIT 191 (276)
T ss_dssp HHTEEEEEE
T ss_pred HCCCcEEEE
Confidence 999988743
No 96
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.71 E-value=0.47 Score=36.61 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=35.2
Q ss_pred HhCCCHHHHHHHHHHHHHCCCeEEc----CCe----EEeCcchHHHHHHHHHH
Q psy2383 343 RTGINIKIIESKLKNAEKLGLLKRN----NKN----IKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 343 ~~~~~~~~~~~~l~~l~~~gl~~~~----~~~----~~lT~~G~~~~~~i~~~ 387 (391)
.++.+...+.+.|..|++.|||+.. +++ +.||++|+-....+...
T Consensus 35 ~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 35 IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 3567777789999999999999753 333 77999999988776543
No 97
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=90.64 E-value=0.79 Score=34.09 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=45.2
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----CeEEeCcchHHHHHHHHH
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~~G~~~~~~i~~ 386 (391)
+..|....++...++.+.+|.+...+...|+.|++.|++.... ..+.+|++|..-.-..+.
T Consensus 30 l~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~ 94 (99)
T 3cuo_A 30 LCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLK 94 (99)
T ss_dssp HHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 3344444468899999999999888899999999999997642 237899998654443333
No 98
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=90.35 E-value=1.3 Score=36.24 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=43.8
Q ss_pred cCCCChhHHHHHhCC--------------CHHHHHHHHHHHHHCCCeEEcCC------eEEeCcchHHHHHHHHHHcc
Q psy2383 332 KDGFSPNLFFERTGI--------------NIKIIESKLKNAEKLGLLKRNNK------NIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~--------------~~~~~~~~l~~l~~~gl~~~~~~------~~~lT~~G~~~~~~i~~~f~ 389 (391)
..++-...+...||- +-.-++..|++|++.|+++.+.+ .=+||++|+-.+|.|+....
T Consensus 71 rg~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~LDriA~~i~ 148 (155)
T 2xzm_T 71 KPHTGISTLKHIFGSNKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTELNRIATQIA 148 (155)
T ss_dssp STTCCHHHHHHHTCCEECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHHHHHHHHHH
Confidence 445666777776652 12235788999999999998744 56899999999999987653
No 99
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=89.83 E-value=1.2 Score=33.62 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=42.5
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---C--CeEEeCcchHHHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---N--KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~--~~~~lT~~G~~~~~~i 384 (391)
.+...++.++.+.+-..+...+..|++.|||... + +.+.||++|+-.....
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~~ 91 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQL 91 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHHh
Confidence 4788899999999877788999999999999873 2 4589999998877654
No 100
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=89.55 E-value=1.4 Score=29.51 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=40.7
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
.+|....+...+||.+++.....|++|...|-+...+.++++.+
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKRsSRYrlkp 59 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKP 59 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCEEEECC
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhhccccccCc
Confidence 47888999999999999988999999999999999999999876
No 101
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=89.29 E-value=1.2 Score=33.86 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=37.2
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHHCCCeEEcC----CeEEeCcchHHHHHHHHHH
Q psy2383 339 LFFERTG--INIKIIESKLKNAEKLGLLKRNN----KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 339 ~~~~~~~--~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~~G~~~~~~i~~~ 387 (391)
.+.++++ .+...+.+.|..|+++|||+... ..+++|++|+-........
T Consensus 33 ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~ 87 (99)
T 2co5_A 33 EILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEF 87 (99)
T ss_dssp HHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHh
Confidence 4455665 45567899999999999998753 3599999999887766543
No 102
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=89.25 E-value=1.3 Score=33.93 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=43.2
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCe---EEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKN---IKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~---~~lT~~G~~~~~~i 384 (391)
..++...++.+.+|.+...+...|+.|++.|+|... +++ +.||++|.-.....
T Consensus 32 ~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~ 88 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTART 88 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHH
Confidence 466889999999999988889999999999999753 233 89999997655443
No 103
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.17 E-value=2.3 Score=30.97 Aligned_cols=63 Identities=16% Similarity=0.004 Sum_probs=44.7
Q ss_pred cCHhhHHHHHHHHhhhhcC---CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCcch
Q psy2383 315 IEKKCLIFEFMLNALRLKD---GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTSFG 377 (391)
Q Consensus 315 l~~~~~~~e~~~~~lr~~~---g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~~G 377 (391)
++..+...+.++..|+... ++...++++..|++-..+...|..|++.|+|...+ +.|.+++-.
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 4443333444555555555 68899999999999878899999999999998764 578877543
No 104
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=88.97 E-value=1.6 Score=40.04 Aligned_cols=148 Identities=16% Similarity=0.036 Sum_probs=85.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 146 (391)
+++.|=+|. |.. ++...+.+ ..+.+.. ++.+++.-++...-+ +..++.++.+|+.+|.+-+=+.+-...+.+
T Consensus 40 Gv~~IE~g~--p~~-~~~d~e~v-~~i~~~~---~~~~i~~l~~~~~~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl 112 (293)
T 3ewb_X 40 GIDVIEAGF--PIS-SPGDFECV-KAIAKAI---KHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATSDVHMEYKL 112 (293)
T ss_dssp TCSEEEEEC--GGG-CHHHHHHH-HHHHHHC---CSSEEEEEEESSHHHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTT
T ss_pred CCCEEEEeC--CCC-CccHHHHH-HHHHHhc---CCCEEEEEecCCHHHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHh
Confidence 466776664 443 45555543 4444432 356777766432101 223444555899999987744444445566
Q ss_pred CCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCC
Q psy2383 147 GRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPS 223 (391)
Q Consensus 147 ~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~ 223 (391)
++.. ..+.+.+.++.+++. .. +.+++..+ +.-+++.+.+.++.+.++|++.|++-- |. ....
T Consensus 113 ~~s~~e~l~~~~~~v~~a~~~g~~-v~~~~~d~-~~~~~~~~~~~~~~~~~~G~~~i~l~D------T~-------G~~~ 177 (293)
T 3ewb_X 113 KMSRAEVLASIKHHISYARQKFDV-VQFSPEDA-TRSDRAFLIEAVQTAIDAGATVINIPD------TV-------GYTN 177 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSC-EEEEEETG-GGSCHHHHHHHHHHHHHTTCCEEEEEC------SS-------SCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCE-EEEEeccC-CCCCHHHHHHHHHHHHHcCCCEEEecC------CC-------CCCC
Confidence 6532 334456667777777 44 66655543 235788889999999999999876543 32 1234
Q ss_pred HHHHHHHHHHHHHH
Q psy2383 224 NDENAVMQDKITSL 237 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (391)
+....+++....+.
T Consensus 178 P~~v~~lv~~l~~~ 191 (293)
T 3ewb_X 178 PTEFGQLFQDLRRE 191 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666554443
No 105
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=88.67 E-value=0.69 Score=41.52 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=53.2
Q ss_pred ecCHhhHHHHHHHHhhhhcC--CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcchHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKD--GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~--g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G~~~~~~i 384 (391)
.++..+. .++..|.... ++...++.+..+.+...+-..++.|++.|||+.. | -.+.||++|+-+...+
T Consensus 155 gLt~~q~---~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 155 TLSFVEF---TILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp SSCHHHH---HHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 4666542 2223344333 3889999999999988888999999999999874 2 3588999999998887
Q ss_pred HHH
Q psy2383 385 QQI 387 (391)
Q Consensus 385 ~~~ 387 (391)
...
T Consensus 232 ~~~ 234 (250)
T 1p4x_A 232 LAQ 234 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 106
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.54 E-value=0.52 Score=38.27 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHHHHcc
Q psy2383 351 IESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~~~f~ 389 (391)
++..|++|++.|+++.+. +.=+||++|+-.+|.|+...+
T Consensus 103 iR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~ 142 (146)
T 3iz6_S 103 SRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVD 142 (146)
T ss_dssp HHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHH
Confidence 477899999999999885 688999999999999987654
No 107
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=88.22 E-value=1.2 Score=32.25 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 324 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
.++..|+....++.+++.+.|+++...++..|+.|++.|++...
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34445666677999999999999998899999999999999887
No 108
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=88.17 E-value=1.1 Score=36.75 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=42.9
Q ss_pred hHHHHHhC--------------CCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHHHHHcc
Q psy2383 338 NLFFERTG--------------INIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 338 ~~~~~~~~--------------~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i~~~f~ 389 (391)
..+.+.|| ++-..+...|+.|+..|||+.. +....+|+.|.-.++.|...++
T Consensus 71 ~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~~i~ 137 (150)
T 2v7f_A 71 ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELK 137 (150)
T ss_dssp HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHHHHH
Confidence 66777777 5555578999999999999986 5589999999999999887654
No 109
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=87.80 E-value=3 Score=39.19 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=71.8
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN 167 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~ 167 (391)
+.++.+++.. ++..+.+-+.|..-..+.++...++|++.+.+-. +.++ .+.+.+.++.+++. +.
T Consensus 71 e~l~~i~~~~---~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~-~~s~-----------~~~~~~~i~~ak~~G~~ 135 (345)
T 1nvm_A 71 EYIEAVAGEI---SHAQIATLLLPGIGSVHDLKNAYQAGARVVRVAT-HCTE-----------ADVSKQHIEYARNLGMD 135 (345)
T ss_dssp HHHHHHHTTC---SSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEE-ETTC-----------GGGGHHHHHHHHHHTCE
T ss_pred HHHHHHHhhC---CCCEEEEEecCCcccHHHHHHHHhCCcCEEEEEE-eccH-----------HHHHHHHHHHHHHCCCE
Confidence 3455555542 3567877767766678899999999999888864 3332 24577888888888 65
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
+...+.-. |.-+++.+.+.++.+.+.|++.|++-.
T Consensus 136 -v~~~~~~a-~~~~~e~~~~ia~~~~~~Ga~~i~l~D 170 (345)
T 1nvm_A 136 -TVGFLMMS-HMIPAEKLAEQGKLMESYGATCIYMAD 170 (345)
T ss_dssp -EEEEEEST-TSSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred -EEEEEEeC-CCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 66665443 677899999999999999999776653
No 110
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=87.60 E-value=1.1 Score=36.88 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=51.2
Q ss_pred HHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--C--CeEEeCcchHHHHHHHHHHccc
Q psy2383 324 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--N--KNIKPTSFGRYFLNDLQQIFLN 390 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~--~~~~lT~~G~~~~~~i~~~f~~ 390 (391)
.++..|. ..+.....+.+.+|++...+..-|+.|++.|||+.. + ..++||+.|...+..++..|++
T Consensus 62 ~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~~~~ 131 (151)
T 3f6v_A 62 RLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDSFWI 131 (151)
T ss_dssp HHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHHHHH
Confidence 3444454 466888999999999888888999999999999754 3 2588999998877777666653
No 111
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=87.45 E-value=0.31 Score=41.16 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-------CeEEeCcchHHHHHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-------~~~~lT~~G~~~~~~i~~ 386 (391)
|+....+.+..+++...+...++.|++.|||+... -.+.||++|+.+...+..
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 145 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLP 145 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 38999999999988767778899999999998752 248999999999887654
No 112
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=87.35 E-value=3 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEc-----CC----eEEeCcchHHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRN-----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~-----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
+.+...+.+.|..|++.|||+.. ++ .+.||++|+-........
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 95 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 95 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 45566789999999999999854 22 378999999988876543
No 113
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=87.29 E-value=8 Score=34.95 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=38.4
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CCCEEE
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GINRLS 132 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv~ris 132 (391)
+.+-|-+||+.+..-..+.+..+++.+++.. ++.+++. +.+.+.++.--++ |..-|.
T Consensus 47 GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~----~~pisID----T~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 47 GAHYLDVNTGPTADDPVRVMEWLVKTIQEVV----DLPCCLD----STNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp TCSEEEEECCSCSSCHHHHHHHHHHHHHHHC----CCCEEEE----CSCHHHHHHHHHHCCSCCEEE
T ss_pred CCCEEEEcCCcCchhHHHHHHHHHHHHHHhC----CCeEEEe----CCCHHHHHHHHHhCCCCCEEE
Confidence 5788999998754434556666677777654 3467764 5578888876666 875553
No 114
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=87.26 E-value=3 Score=40.08 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCCHHHHHHhHHCCCC--EEEEecCCCCHHHHHHhCCC---CCHHHHHHHHHHHHhh-cccceEeEecCCCC--------
Q psy2383 114 TFEIEKFHSYSIIGIN--RLSIGIQSFNNKYLNILGRT---HDSKQAKYAIEIAKQY-FNNFNLDLIYALPN-------- 179 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~--risiGvqS~~~~~l~~l~R~---~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-------- 179 (391)
.++++.++.|+++|+| ||.|+-..+.+.- +.+ ...+.+.++|+.|+++ +. |-+|+- +.||
T Consensus 73 ~ite~D~~~ik~~G~N~VRipi~~~~~~~~~----~~py~~~~~~~ld~vV~~a~~~Gl~-VILDlH-~~pG~qng~~~s 146 (399)
T 3n9k_A 73 WITEQDFKQISNLGLNFVRIPIGYWAFQLLD----NDPYVQGQVQYLEKALGWARKNNIR-VWIDLH-GAPGSQNGFDNS 146 (399)
T ss_dssp HSCHHHHHHHHHTTCCEEEEEEEGGGTCCCT----TCCCCCCHHHHHHHHHHHHHHTTCE-EEEEEE-ECTTCSSCCGGG
T ss_pred cCcHHHHHHHHHcCCCEEEEcccHHHccCCC----CCccchhHHHHHHHHHHHHHHCCCE-EEEEec-CCCcccccccCC
Confidence 4689999999999999 5555534442110 111 1467788999999999 76 888874 4553
Q ss_pred -----------CCHHHHHHHHHHHHh-cC-C---CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 180 -----------QTLSELMLDLNYAIQ-YS-P---PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 180 -----------qt~e~~~~~l~~~~~-l~-~---~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.+.+.+.+-++.+.+ ++ . +.|..|.+.=+|..+ ..+.+.....+..+.+.+++.+=
T Consensus 147 G~~~~~~w~~~~~~~~~~~~w~~iA~ry~~~~y~~~V~~~el~NEP~~~--------~~~~~~~~~~~~~a~~~IR~~~p 218 (399)
T 3n9k_A 147 GLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLGP--------VLNMDKLKQFFLDGYNSLRQTGS 218 (399)
T ss_dssp SSTTCCCTTSTTHHHHHHHHHHHHHHHHSSGGGTTTEEEEESCSCCCGG--------GSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhcccCCCceEEEEeccCCCCC--------CCCHHHHHHHHHHHHHHHHhcCC
Confidence 134445555555554 22 2 457778877777543 12356667788888888888765
Q ss_pred ce
Q psy2383 244 KN 245 (391)
Q Consensus 244 ~~ 245 (391)
.+
T Consensus 219 ~~ 220 (399)
T 3n9k_A 219 VT 220 (399)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 115
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=87.26 E-value=0.49 Score=38.37 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHHHHHcc
Q psy2383 351 IESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDLQQIFL 389 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i~~~f~ 389 (391)
++..|++|++.|+++.+. +.=+||++|+-.+|.|+...+
T Consensus 101 iR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~~v~ 140 (144)
T 3u5c_T 101 NRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTL 140 (144)
T ss_dssp HHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHHHHH
Confidence 578899999999999874 677899999999999987654
No 116
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=86.86 E-value=0.12 Score=48.82 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHH
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i 384 (391)
++..|...+++...++.+.+|++...+...|+.|++.|+++..-..+.||++|.-+...+
T Consensus 25 iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~~gi~LT~~G~~~~~~~ 84 (345)
T 2o0m_A 25 ILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSKSGMTLTERGLEVYQGL 84 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecceEEcHHHHHHHHHH
Confidence 444456667899999999999987778999999999999986667899999998766443
No 117
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=86.56 E-value=0.72 Score=45.28 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=50.5
Q ss_pred HHhhhhc--CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcchHHHHHHHHHHc
Q psy2383 326 LNALRLK--DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFGRYFLNDLQQIF 388 (391)
Q Consensus 326 ~~~lr~~--~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G~~~~~~i~~~f 388 (391)
+..|... .++...++.++.+.+...+-+.++.|++.|||++. | -.+.||++|+-+...+...+
T Consensus 410 l~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~~~ 481 (487)
T 1hsj_A 410 LNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISEL 481 (487)
T ss_dssp HHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 3345445 67888999999999888888999999999999753 2 36999999999988876544
No 118
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=86.18 E-value=3.3 Score=40.07 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=74.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+++.|=.| .|.. ++... +.++.+.+. + ....+...++| +.+-++...++|+++|.+-+=+.+-.....++
T Consensus 74 Gv~~IEvG--~P~a-sp~d~-~~~~~i~~~-~--~~~~v~~~~r~---~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~ 143 (423)
T 3ivs_A 74 GVDYIELT--SPVA-SEQSR-QDCEAICKL-G--LKCKILTHIRC---HMDDARVAVETGVDGVDVVIGTSQYLRKYSHG 143 (423)
T ss_dssp TCSEEEEC--CTTS-CHHHH-HHHHHHHTS-C--CSSEEEEEEES---CHHHHHHHHHTTCSEEEEEEEC----------
T ss_pred CCCEEEEe--eccc-CHHHH-HHHHHHHhc-C--CCCEEEEeecc---ChhhHHHHHHcCCCEEEEEeeccHHHHHHHcC
Confidence 46666654 4654 44433 334444432 2 23455555555 45567888889999988876444433334444
Q ss_pred CCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 148 RTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
+.. ..+.+.++++.+++. .. +.+++.-++ .-+++.+.+.++.+.+.|++.|++-
T Consensus 144 ~s~~e~l~~~~~~v~~ak~~G~~-V~~~~eda~-r~d~~~~~~v~~~~~~~Ga~~i~l~ 200 (423)
T 3ivs_A 144 KDMTYIIDSATEVINFVKSKGIE-VRFSSEDSF-RSDLVDLLSLYKAVDKIGVNRVGIA 200 (423)
T ss_dssp ---CHHHHHHHHHHHHHHTTTCE-EEEEEESGG-GSCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCE-EEEEEccCc-CCCHHHHHHHHHHHHHhCCCccccC
Confidence 432 356677888888888 54 777776555 4678889999999999999977554
No 119
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=86.17 E-value=3.8 Score=31.94 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEc-----CC----eEEeCcchHHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRN-----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~-----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
+++...+.+.|..|++.|||+.. ++ .+.||++|+-.+......
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 92 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKK 92 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHH
Confidence 45556789999999999999864 11 378999999988775443
No 120
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=85.91 E-value=0.93 Score=35.32 Aligned_cols=53 Identities=21% Similarity=0.117 Sum_probs=41.6
Q ss_pred cCCCChhHHHHHhC----CCHHHHHHHHHHHHHCCCeEEc--CCe---EEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERTG----INIKIIESKLKNAEKLGLLKRN--NKN---IKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~~----~~~~~~~~~l~~l~~~gl~~~~--~~~---~~lT~~G~~~~~~i 384 (391)
..++....+.+..+ .+...+...++.|++.|||... +.+ +.||++|..+...+
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 46788888888877 4566788999999999999864 332 67999999987655
No 121
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=85.57 E-value=3.3 Score=40.63 Aligned_cols=141 Identities=9% Similarity=0.081 Sum_probs=88.1
Q ss_pred CCeeEEEEeCCCC-----CCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEE
Q psy2383 67 RKIHTIFIGGGTP-----SLISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 67 ~~~~~i~~gGGtp-----s~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ri 131 (391)
.++.+|=.|+|.- -+++++.. +.++.+++.. ++..+++-++ |+.+.+..++...++|++.|
T Consensus 42 ~Gv~~IE~g~~atF~~~~r~~~~d~~-e~l~~i~~~~---~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i 117 (464)
T 2nx9_A 42 IGYWSLECWGGATFDSCIRFLGEDPW-QRLRLLKQAM---PNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVF 117 (464)
T ss_dssp SCCSEEEEEETTHHHHHHHTTCCCHH-HHHHHHHHHC---SSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEeCcCccccchhhccCCCHH-HHHHHHHHhC---CCCeEEEEeccccccCcccccchhhHHHHHHHHhCCcCEE
Confidence 4678887776421 12234443 3345555543 3456676664 22233667888999999988
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeE--ecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDL--IYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dl--I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
.+-. +.++- +.+.++++.+++. .. +.+++ ..| |.-+++.+.+.++.+.+.|++.|.+--
T Consensus 118 ~if~-~~sd~-----------~ni~~~i~~ak~~G~~-v~~~i~~~~~-~~~~~e~~~~~a~~l~~~Gad~I~l~D---- 179 (464)
T 2nx9_A 118 RVFD-AMNDV-----------RNMQQALQAVKKMGAH-AQGTLCYTTS-PVHNLQTWVDVAQQLAELGVDSIALKD---- 179 (464)
T ss_dssp EECC-TTCCT-----------HHHHHHHHHHHHTTCE-EEEEEECCCC-TTCCHHHHHHHHHHHHHTTCSEEEEEE----
T ss_pred EEEE-ecCHH-----------HHHHHHHHHHHHCCCE-EEEEEEeeeC-CCCCHHHHHHHHHHHHHCCCCEEEEcC----
Confidence 8754 33322 4677899999998 54 65555 455 455899999999999999999876543
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 209 PNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 209 pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
|. ....+....++....++.+
T Consensus 180 --T~-------G~~~P~~v~~lv~~l~~~~ 200 (464)
T 2nx9_A 180 --MA-------GILTPYAAEELVSTLKKQV 200 (464)
T ss_dssp --TT-------SCCCHHHHHHHHHHHHHHC
T ss_pred --CC-------CCcCHHHHHHHHHHHHHhc
Confidence 21 1233455566665554443
No 122
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=85.49 E-value=2.7 Score=39.15 Aligned_cols=126 Identities=16% Similarity=0.065 Sum_probs=76.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 146 (391)
+++.|=.| .|.. ++.+.+.+ ..+.+.. ++.+++.-+++..-+ +..++.++.+|+.+|.+-+=+.+-...+.+
T Consensus 41 Gv~~IE~g--~p~~-~~~d~e~v-~~i~~~~---~~~~i~~l~r~~~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l 113 (325)
T 3eeg_A 41 GVDVIEAG--FPVS-SPGDFNSV-VEITKAV---TRPTICALTRAKEADINIAGEALRFAKRSRIHTGIGSSDIHIEHKL 113 (325)
T ss_dssp TCSEEEEE--CTTS-CHHHHHHH-HHHHHHC---CSSEEEEECCSCHHHHHHHHHHHTTCSSEEEEEEEECSHHHHC---
T ss_pred CCCEEEEe--CCCC-CHhHHHHH-HHHHHhC---CCCEEEEeecCCHHHHHHHHHhhcccCCCEEEEEecccHHHHHHHh
Confidence 45666555 4543 56666554 4455442 356777765443111 122344555599999887655554555666
Q ss_pred CCC--CCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 147 GRT--HDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 147 ~R~--~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
++. ...+.+.++++.+++. .. +.++..++- --+++.+.+.++.+.+.|++.|++
T Consensus 114 ~~s~~e~l~~~~~~v~~a~~~g~~-v~f~~~d~~-~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 114 RSTRENILEMAVAAVKQAKKVVHE-VEFFCEDAG-RADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp -CCCTTGGGTTHHHHHHHHTTSSE-EEEEEETGG-GSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCE-EEEEccccc-cchHHHHHHHHHHHHhcCCCEEEe
Confidence 654 4667788888889888 54 555555442 357888889999999999987644
No 123
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=85.12 E-value=23 Score=32.80 Aligned_cols=127 Identities=14% Similarity=0.029 Sum_probs=74.1
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC----CCC----------CC
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA----LPN----------QT 181 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G----lPg----------qt 181 (391)
.+.++.|+++|+|.|-+.|. .+|. +-..+.+.+.+.++.++++ +. +-+||-++ -|+ .+
T Consensus 30 ~~~~~ilk~~G~n~vRlri~-v~P~-----~g~~d~~~~~~~~~~ak~~Gl~-v~ld~hysd~wadP~~q~~p~~W~~~~ 102 (334)
T 1fob_A 30 QALETILADAGINSIRQRVW-VNPS-----DGSYDLDYNLELAKRVKAAGMS-LYLDLHLSDTWADPSDQTTPSGWSTTD 102 (334)
T ss_dssp CCHHHHHHHHTCCEEEEEEC-SCCT-----TCTTCHHHHHHHHHHHHHTTCE-EEEEECCSSSCCBTTBCBCCTTSCSSC
T ss_pred chHHHHHHHcCCCEEEEEEE-ECCC-----CCccCHHHHHHHHHHHHHCCCE-EEEEeccCCCCCCcccccCccccccCC
Confidence 45789999999998888764 3333 2235788999999999999 76 88887652 243 24
Q ss_pred HHHHH--------HHHHHHHhcC--CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCC--Cceeccc
Q psy2383 182 LSELM--------LDLNYAIQYS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNY--YKNYEIS 249 (391)
Q Consensus 182 ~e~~~--------~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~G--y~~ye~~ 249 (391)
.+++. +.++.+.+.+ |+.+++-. ++..-+. .++-.....+...+++..+.+..++.. -...-+.
T Consensus 103 ~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGN---E~~~G~l-wp~g~~~~~~~l~~~~~~a~~avr~~~~~p~~~v~~ 178 (334)
T 1fob_A 103 LGTLKWQLYNYTLEVCNTFAENDIDIEIISIGN---EIRAGLL-WPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMI 178 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESS---SGGGCSS-BTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee---cCccccc-CCCCcchhHHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 33433 2334444433 45454332 2211110 111112345677788888888888754 3323344
Q ss_pred ccccC
Q psy2383 250 AYSKT 254 (391)
Q Consensus 250 ~fa~~ 254 (391)
+++.+
T Consensus 179 h~~~~ 183 (334)
T 1fob_A 179 HLDDG 183 (334)
T ss_dssp EESCT
T ss_pred EcCCc
Confidence 55554
No 124
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=85.07 E-value=4.8 Score=29.79 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=45.7
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----CeEEeCcchHHHHHHHHHH
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~~G~~~~~~i~~~ 387 (391)
+..|.. .++...++.+..|++...+...|+.|++.|++.... -.+++|+.+..-.-..+..
T Consensus 29 l~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~ 93 (98)
T 3jth_A 29 LCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHS 93 (98)
T ss_dssp HHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence 334443 668899999999999888899999999999997652 3488999886544444333
No 125
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=85.06 E-value=2.8 Score=35.21 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEcC---------CeEEeCcchHHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRNN---------KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~~---------~~~~lT~~G~~~~~~i~~~ 387 (391)
+.+...+.+.|+.|++.|||+... ..+.||++|+-.....+..
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~ 85 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQ 85 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHS
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhC
Confidence 455667899999999999998542 2499999999877765544
No 126
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=84.91 E-value=3.9 Score=31.85 Aligned_cols=43 Identities=23% Similarity=0.054 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEc-----CC----eEEeCcchHHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRN-----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~-----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
+++...+.+.|..|++.|||+.. ++ .+.||++|+-.+......
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 34566789999999999999754 12 388999999988775543
No 127
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.55 E-value=1.4 Score=32.58 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=36.5
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
++..|+....++.+++.+.|+++...++..|+.|++.|++.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444555677999999999999998899999999999999875
No 128
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=84.43 E-value=14 Score=33.46 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=35.7
Q ss_pred CeeEEEEeC-CC-CCC---CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGG-GT-PSL---ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gG-Gt-ps~---l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+-|-+|| +| |.. -..+.++++...++..-.- .+..+++. +.+.+.++.--++|..-|
T Consensus 51 GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~-~~~piSID----T~~~~va~aAl~aGa~iI 114 (282)
T 1aj0_A 51 GATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQR-FEVWISVD----TSKPEVIRESAKVGAHII 114 (282)
T ss_dssp TCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEE----CCCHHHHHHHHHTTCCEE
T ss_pred CCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhh-cCCeEEEe----CCCHHHHHHHHHcCCCEE
Confidence 467888998 55 541 2256676666665543110 13566664 567778887777787554
No 129
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=83.57 E-value=4 Score=28.24 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=35.1
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeC
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPT 374 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT 374 (391)
..+...++.+.+|++...+...++.|++.|+|..+ .+.++|+
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 35889999999999988889999999999998753 3667665
No 130
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=83.55 E-value=3.2 Score=41.45 Aligned_cols=141 Identities=10% Similarity=0.099 Sum_probs=90.1
Q ss_pred CCeeEEEEeCCCC-----CCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC----------CCCCCHHHHHHhHHCCCCEE
Q psy2383 67 RKIHTIFIGGGTP-----SLISDTGLDYLLKNIKKLLLFKKNISITLEAN----------PSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 67 ~~~~~i~~gGGtp-----s~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~----------p~~l~~e~l~~l~~~Gv~ri 131 (391)
.++++|=.|+|.- -+++++.. +.++.+++.. ++..+++-++ |+.+.+..++...++|++.|
T Consensus 59 ~Gv~~IE~G~patF~~~~rfl~~d~~-e~lr~l~~~~---~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~v 134 (539)
T 1rqb_A 59 AGYWSVECWGGATYDSCIRFLNEDPW-ERLRTFRKLM---PNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVF 134 (539)
T ss_dssp TTCSEEEEEETTHHHHHHHTSCCCHH-HHHHHHHHHC---TTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEeCcccccccchhccCCCHH-HHHHHHHHhC---CCCEEEEEeccccccCcccCcccccHHHHHHHHhCCCCEE
Confidence 3688887776521 12233333 3345555543 3566776653 22345678899999999988
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccc--eEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccccc
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNF--NLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v--~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
.+-. +.++- +.+.++++.+++. .. + .++...| |.-+++.+.+.++.+.+.|++.|.+--
T Consensus 135 rIf~-s~sd~-----------~ni~~~i~~ak~~G~~-v~~~i~~~~~-~~~~~e~~~~~a~~l~~~Gad~I~L~D---- 196 (539)
T 1rqb_A 135 RVFD-AMNDP-----------RNMAHAMAAVKKAGKH-AQGTICYTIS-PVHTVEGYVKLAGQLLDMGADSIALKD---- 196 (539)
T ss_dssp EECC-TTCCT-----------HHHHHHHHHHHHTTCE-EEEEEECCCS-TTCCHHHHHHHHHHHHHTTCSEEEEEE----
T ss_pred EEEE-ehhHH-----------HHHHHHHHHHHHCCCe-EEEEEEeeeC-CCCCHHHHHHHHHHHHHcCCCEEEeCC----
Confidence 8754 33332 5578899999988 54 5 4555666 456899999999999999999776543
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 209 PNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 209 pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
|. ....+....++.....+.+
T Consensus 197 --T~-------G~~~P~~v~~lv~~l~~~~ 217 (539)
T 1rqb_A 197 --MA-------ALLKPQPAYDIIKAIKDTY 217 (539)
T ss_dssp --TT-------CCCCHHHHHHHHHHHHHHH
T ss_pred --CC-------CCcCHHHHHHHHHHHHHhc
Confidence 21 1234556666666665554
No 131
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=83.51 E-value=5 Score=38.07 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=73.5
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHh
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNIL 146 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 146 (391)
+++.|=.| .|.. ++...+.+.. +.+. .++..++.-+++..-+ +..++.++.+|+.+|.+-+=+.+-...+.+
T Consensus 47 Gv~~IE~g--~p~~-~~~d~e~v~~-i~~~---~~~~~i~~l~r~~~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l 119 (370)
T 3rmj_A 47 GVDIIEAG--FAAA-SPGDFEAVNA-IAKT---ITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKL 119 (370)
T ss_dssp TCSEEEEE--EGGG-CHHHHHHHHH-HHTT---CSSSEEEEEEESSHHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTT
T ss_pred CCCEEEEe--CCCC-CHHHHHHHHH-HHHh---CCCCeEEEEecCCHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHh
Confidence 35555444 2443 5556555543 3333 2346777666542111 123344555999999987755555556677
Q ss_pred CCCC--CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 147 GRTH--DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 147 ~R~~--~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
++.. ..+.+.++++.++++ .. +.++...+- --+++-+.+.++.+.+.|++.|.+-
T Consensus 120 ~~s~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~~-r~~~~~~~~~~~~~~~~Ga~~i~l~ 177 (370)
T 3rmj_A 120 KMKPKQVIEAAVKAVKIAREYTDD-VEFSCEDAL-RSEIDFLAEICGAVIEAGATTINIP 177 (370)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTCSC-EEEEEETGG-GSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCE-EEEecCCCC-ccCHHHHHHHHHHHHHcCCCEEEec
Confidence 6532 233344455666666 43 544444432 4578888999999999999977554
No 132
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=83.22 E-value=3.2 Score=33.76 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEc-----CC----eEEeCcchHHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRN-----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~-----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
+++...+.+.|+.|++.|||+.. ++ .+.||++|+-........
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 124 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 124 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 46666788999999999999754 12 479999999887766543
No 133
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=82.80 E-value=3.6 Score=29.49 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=40.3
Q ss_pred HHHhhhhcC---CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCc
Q psy2383 325 MLNALRLKD---GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTS 375 (391)
Q Consensus 325 ~~~~lr~~~---g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~ 375 (391)
++..|+... ++...++++..|++-..+...|..|++.|+|...+ +.|.+++
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 333455555 78899999999999888899999999999998765 5677664
No 134
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.53 E-value=1.2 Score=39.91 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=45.9
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C---CeEEeCcchHHHHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N---KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~---~~~~lT~~G~~~~~~i~~~ 387 (391)
+|+...++.+..+.+...+-+.++.|++.|||... | -.+.||++|+-..+.+...
T Consensus 49 ~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 110 (250)
T 1p4x_A 49 NTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTL 110 (250)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 47889999999999877788999999999999864 2 2588999999988777644
No 135
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=81.73 E-value=3.3 Score=32.17 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEc-----CC----eEEeCcchHHHHHHHHHH
Q psy2383 346 INIKIIESKLKNAEKLGLLKRN-----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 346 ~~~~~~~~~l~~l~~~gl~~~~-----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
++...+.+.|..|++.|||+.. ++ .++||++|+-........
T Consensus 40 is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 90 (115)
T 4esb_A 40 VSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS 90 (115)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 4556789999999999999753 12 278999999988776543
No 136
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=81.51 E-value=3.1 Score=31.59 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=40.9
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC---CeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRNN---KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~---~~~~lT~~G~~~~~~i~ 385 (391)
+...+.+.||++...+...|+.|+++|+|+... ..+.+++.+.-....+.
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 788899999999888999999999999998653 47888877766555554
No 137
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=81.40 E-value=1.9 Score=34.69 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHCCCeEEcCCe------EEeCcchHHHHHHH
Q psy2383 348 IKIIESKLKNAEKLGLLKRNNKN------IKPTSFGRYFLNDL 384 (391)
Q Consensus 348 ~~~~~~~l~~l~~~gl~~~~~~~------~~lT~~G~~~~~~i 384 (391)
...+...+.+|+..|++..+.+. ++||++|+-++..-
T Consensus 67 ~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~ 109 (134)
T 3aaf_A 67 ESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKA 109 (134)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCC
Confidence 34578899999999999987443 99999999887653
No 138
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=81.25 E-value=26 Score=32.46 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=75.5
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC----CCCC---------CH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA----LPNQ---------TL 182 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G----lPgq---------t~ 182 (391)
.+.++.|+++|+|.|.+.+ -.+|. +-..+.+.+.+++++++++ +. |-+||-++ -||. +.
T Consensus 30 ~d~~~ilk~~G~N~VRi~~-w~~P~-----~g~~~~~~~~~~~~~A~~~Glk-V~ld~Hysd~WadPg~Q~~p~~W~~~~ 102 (332)
T 1hjs_A 30 QPLENILAANGVNTVRQRV-WVNPA-----DGNYNLDYNIAIAKRAKAAGLG-VYIDFHYSDTWADPAHQTMPAGWPSDI 102 (332)
T ss_dssp CCHHHHHHHTTCCEEEEEE-CSSCT-----TCTTSHHHHHHHHHHHHHTTCE-EEEEECCSSSCCBTTBCBCCTTCCCSH
T ss_pred ccHHHHHHHCCCCEEEEee-eeCCC-----CCcCCHHHHHHHHHHHHHCCCE-EEEEeccCCCcCCccccCCccccccch
Confidence 3578999999999888887 34444 3345788999999999999 76 88997552 2532 22
Q ss_pred HHH--------HHHHHHHHhcC--CCeEEEecccccCCC-cccCCCCCCCCCHHHHHHHHHHHHHHHHHCC--Cceeccc
Q psy2383 183 SEL--------MLDLNYAIQYS--PPHLSLYSLTIEPNT-YFFKYPPLSMPSNDENAVMQDKITSLLKNNY--YKNYEIS 249 (391)
Q Consensus 183 e~~--------~~~l~~~~~l~--~~~is~y~l~~~pgT-~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~G--y~~ye~~ 249 (391)
+.+ .+.++.+.+.+ |+.+++ --+... .+.... ...+.+...+++..+.+..++.. -...-+.
T Consensus 103 ~~~~~~~~~yt~~vl~~l~~~g~~~~~v~v---GNEi~~g~~w~~g--~~~~~~~~~~l~~~~~~avR~~~~~p~~~v~i 177 (332)
T 1hjs_A 103 DNLSWKLYNYTLDAANKLQNAGIQPTIVSI---GNEIRAGLLWPTG--RTENWANIARLLHSAAWGIKDSSLSPKPKIMI 177 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSEEEE---SSSGGGEETBTTE--ETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEE---eecccccccCcCC--CccCHHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 222 34455555544 343322 111111 000000 12356777888888888888765 4434455
Q ss_pred ccccCC
Q psy2383 250 AYSKTG 255 (391)
Q Consensus 250 ~fa~~g 255 (391)
+++.+.
T Consensus 178 h~~~~~ 183 (332)
T 1hjs_A 178 HLDNGW 183 (332)
T ss_dssp EESCTT
T ss_pred EeCCcc
Confidence 666553
No 139
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.12 E-value=3.1 Score=30.36 Aligned_cols=53 Identities=6% Similarity=0.087 Sum_probs=42.0
Q ss_pred HHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC---eEEeCcc
Q psy2383 323 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK---NIKPTSF 376 (391)
Q Consensus 323 e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~---~~~lT~~ 376 (391)
+.++.-|+ ..|+...++.+..|++...+...|..|++.|+|...++ .|++|..
T Consensus 20 ~~IL~lL~-~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~ 75 (82)
T 1oyi_A 20 CEAIKTIG-IEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHS-SSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESCC-
T ss_pred HHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceeccC
Confidence 34445566 46788999999999998889999999999999998754 4777753
No 140
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=80.85 E-value=3.2 Score=32.76 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=34.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCeEEc----C----CeEEeCcchHHHHHHHHHH
Q psy2383 344 TGINIKIIESKLKNAEKLGLLKRN----N----KNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 344 ~~~~~~~~~~~l~~l~~~gl~~~~----~----~~~~lT~~G~~~~~~i~~~ 387 (391)
++.+...+.+.|..|++.|||+.. + ..++||++|+-........
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~ 99 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQ 99 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 355566789999999999999864 2 1477999999988776443
No 141
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=80.38 E-value=5.6 Score=35.48 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=44.3
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 382 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~ 382 (391)
.++...++.+..|.+...+...|..|++.|++..++++++|+++...+..
T Consensus 28 ~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~~~l~~ 77 (257)
T 2g7u_A 28 PNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQ 77 (257)
T ss_dssp SSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECGGGHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEEcHHHHHHHH
Confidence 46889999999999888888999999999999999999999998766554
No 142
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=80.11 E-value=5.1 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
..++..++.+.+|++...+..-|..|++.|+|..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 456788999999998777899999999999999873
No 143
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=79.98 E-value=15 Score=34.84 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=75.8
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+++.|=+|. |.. ++. ..+.++.+++. .....+..-+++ ..+-++...++|++.|.+-+ +.++-..+.++
T Consensus 38 Gv~~IE~g~--p~~-~~~-~~~~~~~i~~~---~~~~~v~~~~r~---~~~di~~a~~~g~~~v~i~~-~~s~~~~~~~~ 106 (382)
T 2ztj_A 38 GIEYIEVTT--PVA-SPQ-SRKDAEVLASL---GLKAKVVTHIQC---RLDAAKVAVETGVQGIDLLF-GTSKYLRAPHG 106 (382)
T ss_dssp TCSEEEECC--TTS-CHH-HHHHHHHHHTS---CCSSEEEEEEES---CHHHHHHHHHTTCSEEEEEE-CC--------C
T ss_pred CcCEEEEcC--CcC-CHH-HHHHHHHHHhc---CCCcEEEEEccc---ChhhHHHHHHcCCCEEEEEe-ccCHHHHHHhC
Confidence 467777764 554 333 33445555543 233566655554 35568888899999888866 55555444444
Q ss_pred CCC--CHHHHHHHHHHHHhhc--ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 148 RTH--DSKQAKYAIEIAKQYF--NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 148 R~~--~~~~~~~~i~~~~~~~--~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
+.. ..+.+.++++.+++.. ..+.+++.-+ +.-+++.+.+.++.+.+. ++.|.+-.
T Consensus 107 ~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~-~~~~~~~~~~~~~~~~~~-a~~i~l~D 165 (382)
T 2ztj_A 107 RDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDT-FRSEEQDLLAVYEAVAPY-VDRVGLAD 165 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTT-TTSCHHHHHHHHHHHGGG-CSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeC-CCCCHHHHHHHHHHHHHh-cCEEEecC
Confidence 332 1244677777777764 5577777654 467889999999999999 98776543
No 144
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=79.71 E-value=9.2 Score=33.79 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=44.8
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i 384 (391)
.++...++.+..|.+...+...|+.|++.|++..+ +++++|+++...+....
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l~~~~ 74 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFV 74 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHHHHHH
Confidence 36889999999999888888999999999999987 78899999877666554
No 145
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=79.37 E-value=2.6 Score=32.77 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEc--C----C----eEEeCcchHHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRN--N----K----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~--~----~----~~~lT~~G~~~~~~i~~~ 387 (391)
+++...+.+.|..|+++|||+.. . + .++||++|+-........
T Consensus 53 ~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 105 (115)
T 2dql_A 53 RLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARL 105 (115)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 35556789999999999999753 1 2 399999999887766543
No 146
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=79.13 E-value=9.2 Score=33.44 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=66.6
Q ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCC--C--CHH-------HHHHhHHCCCCEEEEecCCCCH
Q psy2383 72 IFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPST--F--EIE-------KFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 72 i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~--l--~~e-------~l~~l~~~Gv~risiGvqS~~~ 140 (391)
+..||=|||+ ..++.+.... +.. ++.+.+-.+|.. + |++ .++.++++|++.|.+|+-+-|-
T Consensus 31 L~~GGlTPS~---g~i~~~~~~~-~~~----~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg 102 (224)
T 2bdq_A 31 LAVGGTTPSY---GVIKEANQYL-HEK----GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNN 102 (224)
T ss_dssp GGGTCBCCCH---HHHHHHHHHH-HHT----TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS
T ss_pred cccCCcCCCH---HHHHHHHHhh-hhc----CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC
Confidence 3467778875 2333331001 332 357888888842 2 543 4556778999999999987543
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhh---cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 141 KYLNILGRTHDSKQAKYAIEIAKQY---FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 141 ~~l~~l~R~~~~~~~~~~i~~~~~~---~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
..+.+...+.++.+... |. --+|.+ | ..+..+.++++.++|+++|-..
T Consensus 103 --------~iD~~~~~~Li~~a~~~~vTFH-RAFD~~---~---~~d~~~ale~L~~lGv~rILTS 153 (224)
T 2bdq_A 103 --------HIDTEAIEQLLPATQGLPLVFH-MAFDVI---P---KSDQKKSIDQLVALGFTRILLH 153 (224)
T ss_dssp --------SBCHHHHHHHHHHHTTCCEEEC-GGGGGS---C---TTTHHHHHHHHHHTTCCEEEEC
T ss_pred --------CcCHHHHHHHHHHhCCCeEEEE-Cchhcc---C---CcCHHHHHHHHHHcCCCEEECC
Confidence 34666677777666543 21 123332 1 1445667999999999998433
No 147
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=78.82 E-value=19 Score=32.54 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=33.5
Q ss_pred CeeEEEEeC-----CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGG-----GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gG-----Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+.|-+|| |.+.+-..+.+++++..|+..-.. ++.+++ ++.+.+.++.--++|..-|
T Consensus 42 GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSI----DT~~~~va~aAl~aGa~iI 104 (280)
T 1eye_A 42 GAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSI----DTMRADVARAALQNGAQMV 104 (280)
T ss_dssp TCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEE----ECSCHHHHHHHHHTTCCEE
T ss_pred CCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEE----eCCCHHHHHHHHHcCCCEE
Confidence 467788888 333344466788887777764221 456676 4677888888778887555
No 148
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=78.79 E-value=13 Score=32.51 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=49.7
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhc
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQY 195 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l 195 (391)
++.++.++++|++.|.+....+ .-..+.+++.+..+.++++ +.-+++..-. .++.+.+.+.++.+.++
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~--------~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~---~~~~~~~~~~i~~A~~l 101 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHL--------PLNSTDEQIRAFHDKCAAHKVTGYAVGPIY---MKSEEEIDRAFDYAKRV 101 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTS--------CTTCCHHHHHHHHHHHHHTTCEEEEEEEEE---ECSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecccC--------CCCCCHHHHHHHHHHHHHcCCeEEEEeccc---cCCHHHHHHHHHHHHHh
Confidence 6788888888888888876521 1123556666666667776 5422222111 17788888888888888
Q ss_pred CCCeEEEe
Q psy2383 196 SPPHLSLY 203 (391)
Q Consensus 196 ~~~~is~y 203 (391)
|++.|.+.
T Consensus 102 Ga~~v~~~ 109 (257)
T 3lmz_A 102 GVKLIVGV 109 (257)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEec
Confidence 88888763
No 149
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=78.38 E-value=11 Score=29.17 Aligned_cols=52 Identities=13% Similarity=0.021 Sum_probs=41.3
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-C---eEEeCcchHH
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-K---NIKPTSFGRY 379 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~---~~~lT~~G~~ 379 (391)
.|....+....++.+..|.+...+...|..|++.|++.... + .+++|+.|..
T Consensus 50 ~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~ 105 (122)
T 1u2w_A 50 ALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIR 105 (122)
T ss_dssp HHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHH
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHH
Confidence 34334668889999999999888889999999999998653 2 5899998865
No 150
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=78.31 E-value=5.6 Score=28.42 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=37.3
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc------CCeEEeCc
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN------NKNIKPTS 375 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~------~~~~~lT~ 375 (391)
.|....++...++.+.+|++...+...|+.|++.|++... +..+.+++
T Consensus 8 ~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~ 61 (81)
T 2htj_A 8 FLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG 61 (81)
T ss_dssp HHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence 3444456899999999999988889999999999999853 23555554
No 151
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=77.94 E-value=7.4 Score=34.77 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=67.2
Q ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCC--C--CHH-------HHHHhHHCCCCEEEEecCCCCH
Q psy2383 72 IFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPST--F--EIE-------KFHSYSIIGINRLSIGIQSFNN 140 (391)
Q Consensus 72 i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~--l--~~e-------~l~~l~~~Gv~risiGvqS~~~ 140 (391)
+..||=|||+ .++..+++..+ +++.+-.+|.. + |++ .++.++++|++.|.+|+-+-|-
T Consensus 31 L~~GGlTPS~-------g~i~~~~~~~~----ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg 99 (256)
T 1twd_A 31 PKEGGLTPSL-------GVLKSVRQRVT----IPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDG 99 (256)
T ss_dssp GGGTCBCCCH-------HHHHHHHHHCC----SCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS
T ss_pred cccCCCCCCH-------HHHHHHHHHcC----CceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC
Confidence 4567778875 23344455433 57788888742 3 543 4556778999999999987543
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhh---cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 141 KYLNILGRTHDSKQAKYAIEIAKQY---FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 141 ~~l~~l~R~~~~~~~~~~i~~~~~~---~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
..+.+...+.++.+... |. --+|.+ .+..+.++.+.++|+++|-..
T Consensus 100 --------~iD~~~~~~Li~~a~~~~vTFH-RAfD~~--------~d~~~ale~L~~lG~~rILTS 148 (256)
T 1twd_A 100 --------NVDMPRMEKIMAAAGPLAVTFH-RAFDMC--------ANPLYTLNNLAELGIARVLTS 148 (256)
T ss_dssp --------SBCHHHHHHHHHHHTTSEEEEC-GGGGGC--------SCHHHHHHHHHHHTCCEEEEC
T ss_pred --------CcCHHHHHHHHHHhCCCcEEEE-Cchhcc--------CCHHHHHHHHHHcCCCEEECC
Confidence 34666677777766554 22 223333 245667999999999998443
No 152
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=77.26 E-value=13 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC----CeEEeCcchHHH-HHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN----KNIKPTSFGRYF-LNDLQQ 386 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~----~~~~lT~~G~~~-~~~i~~ 386 (391)
......++.+..|++...+...|+.|++.|++.... -.++||+.+..- .+.+..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~ 93 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYT 93 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHH
Confidence 558889999999998777889999999999998642 358999876553 344433
No 153
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=76.83 E-value=11 Score=27.84 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=41.1
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC----------eEEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK----------NIKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~----------~~~lT~~G~~~~~~i 384 (391)
..++...++.+.+|++...+...++.|++.|++....+ .+.+|+...-.....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~ 96 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRND 96 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHH
Confidence 56789999999999998888999999999999986521 256777555444433
No 154
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=75.38 E-value=11 Score=28.80 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=40.9
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE--cCCeEEeCcchHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR--NNKNIKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~--~~~~~~lT~~G~~~~~~ 383 (391)
.+....++.+..|++...+...|+.|++.|++.. ++..+.+|..|..+...
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~ 96 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQL 96 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHH
Confidence 4688999999999998888899999999999964 46667777766655443
No 155
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=74.97 E-value=6.5 Score=30.35 Aligned_cols=54 Identities=4% Similarity=-0.015 Sum_probs=43.3
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--C--CeEEeCcchHHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--N--KNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~--~~~~lT~~G~~~~~~i~ 385 (391)
..+.....+.+..|++...+...|+.|++.|+|... + ..++||+.|.-.+....
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 456788899999999988888999999999999754 3 35889999977665443
No 156
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=74.48 E-value=14 Score=31.23 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
.+..+.++...|.+.+.+...+..|.++|++..+++++.+.+.-.+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L 214 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRL 214 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHH
Confidence 5678889999999998899999999999999999999999875443
No 157
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=74.00 E-value=8.1 Score=29.87 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCH-HHHHHHHHHHHHCCCeEEc----CC----eEEeCcchHHHHHHHHHH
Q psy2383 346 INI-KIIESKLKNAEKLGLLKRN----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 346 ~~~-~~~~~~l~~l~~~gl~~~~----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
++. ..+.+.|+.|++.|||+.. ++ .+.||++|+-........
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 444 4578899999999999754 22 479999999887765443
No 158
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=73.81 E-value=34 Score=31.22 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=35.6
Q ss_pred CeeEEEEeCCC--C---CCCCHHHHHHHHH---HHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGGGT--P---SLISDTGLDYLLK---NIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gGGt--p---s~l~~~~l~~ll~---~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+-|-+||-. | ..-..+.+++++. .+++.+ ++.+++. +.+.+.++.--++|..-|
T Consensus 76 GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~----~vpiSID----T~~~~V~~aAl~aGa~iI 139 (297)
T 1tx2_A 76 GAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV----KLPISID----TYKAEVAKQAIEAGAHII 139 (297)
T ss_dssp TCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS----CSCEEEE----CSCHHHHHHHHHHTCCEE
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CceEEEe----CCCHHHHHHHHHcCCCEE
Confidence 57788888732 2 2334667888874 445443 3467764 567888887777787655
No 159
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=73.80 E-value=16 Score=27.28 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=39.6
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CC--eEEeCcchHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NK--NIKPTSFGRY 379 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~--~~~lT~~G~~ 379 (391)
..+....++.+..|.+...+...|+.|++.|++... +. .+++|+.+..
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~ 88 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVA 88 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHH
Confidence 456889999999999988888999999999999753 43 5778888754
No 160
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=73.41 E-value=6.5 Score=29.85 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=39.1
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CC--eEEeCcchHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NK--NIKPTSFGRY 379 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~--~~~lT~~G~~ 379 (391)
.++...++.+..|++...+...|+.|++.|+|... +. .+++|+.|..
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~ 87 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVA 87 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHH
Confidence 56788999999999988888999999999999743 33 4789998854
No 161
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=72.90 E-value=35 Score=30.20 Aligned_cols=108 Identities=11% Similarity=0.040 Sum_probs=66.1
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec-----------------CCC
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY-----------------ALP 178 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~-----------------GlP 178 (391)
++.++.++++|++.|.+...... ..+.+++.+..+.++++ +. +..- .. |.+
T Consensus 24 ~~~l~~~~~~G~~~vEl~~~~~~---------~~~~~~~~~~~~~l~~~gl~-~~~~-~~~~~g~~~~~~~~~~~~~~~~ 92 (290)
T 3tva_A 24 GVHLEVAQDLKVPTVQVHAPHPH---------TRTREHAQAFRAKCDAAGIQ-VTVI-FGGFDGESYADIPTTARTVGLV 92 (290)
T ss_dssp SBCHHHHHHTTCSEEEEECCCGG---------GCSHHHHHHHHHHHHHTTCE-EEEE-ECCCTTCCCSSHHHHHHHSSSC
T ss_pred HHHHHHHHHcCCCEEEecCCCCC---------cCCHHHHHHHHHHHHHcCCE-EEEE-eeccCCcccccccccccccCCC
Confidence 46899999999999999874321 13556667777777777 64 3321 11 221
Q ss_pred C-----CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 179 N-----QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 179 g-----qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
. ++.+.+.+.++.+.++|++.|.+.+ |.. +.......+...+.+..+.+...+.|..
T Consensus 93 ~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~-----G~~----~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 154 (290)
T 3tva_A 93 PLETRASRVAEMKEISDFASWVGCPAIGLHI-----GFV----PESSSPDYSELVRVTQDLLTHAANHGQA 154 (290)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHTCSEEEECC-----CCC----CCTTSHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcC-----CCC----cccchHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1 1346778888899999999987753 210 0000111234455566777777777864
No 162
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=72.45 E-value=6.5 Score=31.61 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEc------CC----eEEeCcchHHHHHHHHH
Q psy2383 345 GINIKIIESKLKNAEKLGLLKRN------NK----NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 345 ~~~~~~~~~~l~~l~~~gl~~~~------~~----~~~lT~~G~~~~~~i~~ 386 (391)
+.+...+.+.|..|++.|||+.. ++ .++||++|+-.......
T Consensus 65 ~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 116 (138)
T 2e1n_A 65 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 116 (138)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHH
Confidence 35556789999999999999753 12 29999999987776644
No 163
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=72.38 E-value=7.7 Score=36.34 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=44.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 382 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~ 382 (391)
.+++.+++.++.|.+...+...|..|...|+++.+++++.+|+.+.++..
T Consensus 49 ~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~L~~ 98 (363)
T 3dp7_A 49 EGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLN 98 (363)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecCCEEecccchHHhhC
Confidence 46888999999999987788999999999999999999999999987763
No 164
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=72.13 E-value=11 Score=33.14 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=43.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC--CeEEeCcchHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN--KNIKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~--~~~~lT~~G~~~~~~ 383 (391)
.++...++.+..|.+...+...|+.|++.||+..++ ++++|+++...+...
T Consensus 20 ~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~lg~~ 72 (241)
T 2xrn_A 20 HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQLINQ 72 (241)
T ss_dssp TCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHHHhh
Confidence 368899999999998888889999999999999874 789999987776543
No 165
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=72.08 E-value=22 Score=33.99 Aligned_cols=120 Identities=20% Similarity=0.133 Sum_probs=72.2
Q ss_pred CCCHHHHHHhHHCCCCEEEEec--CCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC----------
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGI--QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ---------- 180 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGv--qS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq---------- 180 (391)
.++++.++.|+++|+|-|-|.| ..+.+.--.-.......+.+.++|+.|+++ +. |-+|+-. .||-
T Consensus 73 ~~te~d~~~i~~~G~N~VRipi~~~~~~~~~~~py~~~~~l~~ld~vv~~a~~~Gi~-VilDlH~-~pG~qng~~~sG~~ 150 (408)
T 1h4p_A 73 FYQEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLK-VWVDLHG-AAGSQNGFDNSGLR 150 (408)
T ss_dssp HSCHHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCE-EEEEEEE-CTTCSSCCGGGSST
T ss_pred cCCHHHHHHHHHCCCCEEEccCCHHHcccCCCCCCccccHHHHHHHHHHHHHHCCCE-EEEECCC-CCCccCCccCCCCC
Confidence 3688999999999999555544 444221000000011456788999999999 76 7788753 3431
Q ss_pred ---------CHHHHHHHHHHHHh-cC-C---CeEEEecccccCCCcccCCCCCCCCCHHHHH-HHHHHHHHHHHHC-CC
Q psy2383 181 ---------TLSELMLDLNYAIQ-YS-P---PHLSLYSLTIEPNTYFFKYPPLSMPSNDENA-VMQDKITSLLKNN-YY 243 (391)
Q Consensus 181 ---------t~e~~~~~l~~~~~-l~-~---~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~-~~~~~~~~~L~~~-Gy 243 (391)
+.+.+.+.++.+.+ ++ . +.|..|.+.=+|..+- .+.+... ..+..+.+.+++. |=
T Consensus 151 ~~~~w~~~~~~~~~~~~w~~ia~ry~~~~y~~~Vi~~el~NEP~~~~--------~~~~~~~~~~~~~~~~~IR~~~~~ 221 (408)
T 1h4p_A 151 DSYKFLEDSNLAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPV--------LDMDKMKNDYLAPAYEYLRNNIKS 221 (408)
T ss_dssp TCCCTTSHHHHHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGG--------SCHHHHHHHTHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcccCCCCeEEEEEeccCCCCCC--------CCHHHHHHHHHHHHHHHHHhhcCC
Confidence 23444455555553 33 1 4676788777775421 2345555 7778888888876 43
No 166
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=71.55 E-value=60 Score=29.51 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=34.5
Q ss_pred CeeEEEEeC-----CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGG-----GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gG-----Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+-|-+|| |.+.+-..+.+++++..|+..-.. ++.+++. +.+.+.++.--++|..-|
T Consensus 65 GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSID----T~~~~Va~aAl~aGa~iI 127 (294)
T 2dqw_A 65 GADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVD----TRKPEVAEEALKLGAHLL 127 (294)
T ss_dssp TCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEE----CSCHHHHHHHHHHTCSEE
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEE----CCCHHHHHHHHHhCCCEE
Confidence 467788988 323333456778887777765321 4567764 667778777767786533
No 167
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=70.25 E-value=2.7 Score=32.85 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEcC-----C----eEEeCcchHHHHHHH
Q psy2383 347 NIKIIESKLKNAEKLGLLKRNN-----K----NIKPTSFGRYFLNDL 384 (391)
Q Consensus 347 ~~~~~~~~l~~l~~~gl~~~~~-----~----~~~lT~~G~~~~~~i 384 (391)
+...+.+.|..|++.|||+... + .+.||++|+-.....
T Consensus 46 ~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~ 92 (117)
T 3elk_A 46 PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDH 92 (117)
T ss_dssp CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHH
Confidence 3346789999999999998531 1 478999999877653
No 168
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=70.11 E-value=21 Score=27.74 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=37.8
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCcch
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTSFG 377 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~G 377 (391)
..+...++.+.+|++...+...+..|.+.|++... ++.++|+...
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 35888999999999988889999999999999875 3679998654
No 169
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=69.99 E-value=15 Score=32.76 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=45.0
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC-eEEeCcchHHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK-NIKPTSFGRYFLNDL 384 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~-~~~lT~~G~~~~~~i 384 (391)
..++...++.+..|.+...+...|..|++.||+..+.+ +++|+++...+....
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~lg~~~ 89 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYSLGPEMLRWVRLA 89 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHHHHHHH
Confidence 35789999999999988788899999999999998754 899998877766554
No 170
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=69.75 E-value=21 Score=33.17 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=35.5
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHH-HHHHHH---hCCCC---CCcE-EEEeeCCCCCCHHHHHHhHHCCCCEEEE
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYL-LKNIKK---LLLFK---KNIS-ITLEANPSTFEIEKFHSYSIIGINRLSI 133 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~l-l~~i~~---~~~~~---~~~e-it~e~~p~~l~~e~l~~l~~~Gv~risi 133 (391)
+++.|++.+...+.++++.++++ +..+++ .+.-. ++.. +.+. ... ...++.|.+.|++-+++
T Consensus 200 Gad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~---~g~-~~~l~~l~~~g~d~i~~ 269 (354)
T 3cyv_A 200 GAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFT---KGG-GQWLEAMAETGCDALGL 269 (354)
T ss_dssp TCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEEC---TTT-TTTHHHHHTTSCSEEEC
T ss_pred CCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEC---CCH-HHHHHHHHhcCCCEEEe
Confidence 56778777766678898766544 222222 22100 0122 2222 222 45788899999999985
No 171
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=69.67 E-value=22 Score=28.96 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=40.2
Q ss_pred CChhHHHHHhC-CCHHHHHHHHHHHHHCCCeEEc---C-----C----eEEeCcchHHHHHH
Q psy2383 335 FSPNLFFERTG-INIKIIESKLKNAEKLGLLKRN---N-----K----NIKPTSFGRYFLND 383 (391)
Q Consensus 335 ~~~~~~~~~~~-~~~~~~~~~l~~l~~~gl~~~~---~-----~----~~~lT~~G~~~~~~ 383 (391)
...+.+.+..+ ++...+...|+.|++.|+|... + + .+.||++|+-....
T Consensus 46 ~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 46 LSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp BCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 67788888777 7877889999999999999843 1 2 78999999988765
No 172
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=69.19 E-value=5.3 Score=32.60 Aligned_cols=41 Identities=15% Similarity=0.038 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEcC------C----eEEeCcchHHHHHHHHH
Q psy2383 346 INIKIIESKLKNAEKLGLLKRNN------K----NIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 346 ~~~~~~~~~l~~l~~~gl~~~~~------~----~~~lT~~G~~~~~~i~~ 386 (391)
.+...+.+.|..|+++|||+... + .++||++|+-.......
T Consensus 76 is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 126 (148)
T 2zfw_A 76 LSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 126 (148)
T ss_dssp CCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHH
T ss_pred CChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 44456889999999999998641 2 39999999987665543
No 173
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=68.75 E-value=34 Score=31.20 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=44.8
Q ss_pred CeeEEEEeC-----CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEE-EecCCCCHH
Q psy2383 68 KIHTIFIGG-----GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS-IGIQSFNNK 141 (391)
Q Consensus 68 ~~~~i~~gG-----Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~ 141 (391)
+.+.|-+|| |.+.+-..+.+++++..|+..-.. ++.+++ ++.+.+.++.--++|..-|+ +.-.. +++
T Consensus 59 GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~--~vpiSI----DT~~~~Va~aAl~aGa~iINdVsg~~-d~~ 131 (294)
T 2y5s_A 59 GADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL--NVPLSI----DTYKPAVMRAALAAGADLINDIWGFR-QPG 131 (294)
T ss_dssp TCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG--CSCEEE----ECCCHHHHHHHHHHTCSEEEETTTTC-STT
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC--CCeEEE----ECCCHHHHHHHHHcCCCEEEECCCCC-chH
Confidence 578899998 333344467888888888775321 456676 46677888877777875442 32222 555
Q ss_pred HHHHh
Q psy2383 142 YLNIL 146 (391)
Q Consensus 142 ~l~~l 146 (391)
++..+
T Consensus 132 m~~~~ 136 (294)
T 2y5s_A 132 AIDAV 136 (294)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 174
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=68.56 E-value=13 Score=34.90 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=57.7
Q ss_pred hHHHHHHHhcCCCcceeeecCHhhHHHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 296 PNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 296 ~~~y~~~~~~~~~~~~~~~l~~~~~~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
.+++++++... ..+++..+..+.++..| ..+.+..++.+..|.+...+...|+.|.+.|+++.+++ +++|+
T Consensus 25 ~~~~~~~~~~~------~~l~~~~~~~~~ll~~L--~~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~~-~~lt~ 95 (373)
T 2qm3_A 25 MKEIVERVKTK------TKIPVYERSVENVLSAV--LASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFEDG-VKLTE 95 (373)
T ss_dssp HHHHHHHHHTT------CSSCCCHHHHHHHHHHH--HHCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSSS-SEECH
T ss_pred HHHHHHHHHHh------cCccHhHHHHHHHHHHh--cCCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECCC-EEECH
Confidence 56788877532 13444444555555555 35688899999999987778889999999999998765 99999
Q ss_pred chHHHHHH
Q psy2383 376 FGRYFLND 383 (391)
Q Consensus 376 ~G~~~~~~ 383 (391)
.|..+...
T Consensus 96 ~~~~~l~~ 103 (373)
T 2qm3_A 96 KGEELVAE 103 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88766544
No 175
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=68.49 E-value=30 Score=30.67 Aligned_cols=110 Identities=5% Similarity=-0.098 Sum_probs=66.2
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC------C-------CCH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP------N-------QTL 182 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP------g-------qt~ 182 (391)
++.++.++++|++.|.+....+. ..+.+++.+..+.++++ +. +.. +.+.+ . ++.
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~~---------~~~~~~~~~~~~~l~~~gl~-i~~--~~~~~~~~~l~~~d~~~r~~~~ 87 (294)
T 3vni_A 20 KYYIEKVAKLGFDILEIAASPLP---------FYSDIQINELKACAHGNGIT-LTV--GHGPSAEQNLSSPDPDIRKNAK 87 (294)
T ss_dssp HHHHHHHHHHTCSEEEEESTTGG---------GCCHHHHHHHHHHHHHTTCE-EEE--EECCCGGGCTTCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCcccC---------CcCHHHHHHHHHHHHHcCCe-EEE--eecCCCCcCCCCCCHHHHHHHH
Confidence 68999999999999999876521 13556677777777777 65 433 22321 1 124
Q ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCc
Q psy2383 183 SELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN----DENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~----~~~~~~~~~~~~~L~~~Gy~ 244 (391)
+.+++.++.+.++|++.|.+. +.++.+..-. ...+. +...+.+..+.+...+.|..
T Consensus 88 ~~~~~~i~~a~~lG~~~v~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 147 (294)
T 3vni_A 88 AFYTDLLKRLYKLDVHLIGGA---LYSYWPIDYT---KTIDKKGDWERSVESVREVAKVAEACGVD 147 (294)
T ss_dssp HHHHHHHHHHHHHTCCEEEES---TTSCSSCCTT---SCCCHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCCeeecc---ccCCCCCcCC---CCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 567788899999999988631 1222210000 01222 23344556666777777864
No 176
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=68.38 E-value=8.6 Score=34.41 Aligned_cols=51 Identities=10% Similarity=-0.081 Sum_probs=43.9
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLND 383 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~ 383 (391)
.++...++.+..|.+...+...|..|++.||+..++++++|+++-..+...
T Consensus 35 ~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~~~lg~~ 85 (265)
T 2ia2_A 35 QRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYS 85 (265)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSSEEEECGGGGGTTHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCEEEEcHHHHHHHHH
Confidence 568899999999998888889999999999999999999999876555443
No 177
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=67.59 E-value=61 Score=28.09 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=9.3
Q ss_pred HHHHHHhHHCCCCEEEEec
Q psy2383 117 IEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGv 135 (391)
++.++.++++|++.|.+..
T Consensus 22 ~~~l~~~~~~G~~~vEl~~ 40 (272)
T 2q02_A 22 EAFFRLVKRLEFNKVELRN 40 (272)
T ss_dssp HHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHcCCCEEEeec
Confidence 3444555555555555543
No 178
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=67.13 E-value=10 Score=35.17 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=43.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 381 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~ 381 (391)
++++.+++.+..|.+...+...|..|...|+++.+++++.+|+.+..++
T Consensus 55 ~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~s~~~l 103 (352)
T 3mcz_A 55 TGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFRNTALTERYL 103 (352)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecCCeeecCHHHHhhc
Confidence 3788899999999998778899999999999999999999999987554
No 179
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=67.11 E-value=23 Score=30.16 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=39.6
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.+..+.++...|.+.+.+...+..|.++|+++.+++++.+.+.-.
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~ 224 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDR 224 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHHH
Confidence 467788999999998889999999999999999999999986543
No 180
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=67.02 E-value=13 Score=28.65 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=38.3
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CC--eEEeCcchHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NK--NIKPTSFGRY 379 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~--~~~lT~~G~~ 379 (391)
.+....++.+..|.+...+...|+.|++.|++... +. .++||+.+..
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLA 83 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHH
Confidence 45778899999999988888999999999999854 32 4889988753
No 181
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=66.85 E-value=16 Score=34.10 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=70.7
Q ss_pred CCHHHHHHhHHCCCCEEEEec--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhh-cccceEeEecCCC----------
Q psy2383 115 FEIEKFHSYSIIGINRLSIGI--QSFNNKYLNILGRTHD---SKQAKYAIEIAKQY-FNNFNLDLIYALP---------- 178 (391)
Q Consensus 115 l~~e~l~~l~~~Gv~risiGv--qS~~~~~l~~l~R~~~---~~~~~~~i~~~~~~-~~~v~~dlI~GlP---------- 178 (391)
.+.+.++.+++.|+|.|-|.| +.+.+. ..+...+ .+.+.++|+.+.+. +. +-+|+- ..|
T Consensus 44 ~t~~m~~~i~~~G~N~vRipi~w~~~~~~---~~~g~~~~~~l~~ld~vV~~a~~~Gi~-vIlDlH-~~~~~~g~~~~~~ 118 (340)
T 3qr3_A 44 GIGQMQHFVNEDGMTIFRLPVGWQYLVNN---NLGGNLDSTSISKYDQLVQGCLSLGAY-CIVDIH-NYARWNGGIIGQG 118 (340)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECHHHHTTT---CTTCCCCHHHHHHHHHHHHHHHHTTCE-EEEEEC-STTEETTEETTTT
T ss_pred cHHHHHHHHHHCCCCEEEEEeeHHHhCCC---CCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEec-CCcccCCcccCCC
Confidence 367888899999998555444 322110 0111122 45577888999988 65 667763 333
Q ss_pred CCCHHHHHHHHHHHHhc-C-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 179 NQTLSELMLDLNYAIQY-S-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
..+.+.+.+-.+.+.+. + -++| +|.+.=+|.. ++.+...+.++.+.+..++.|-.
T Consensus 119 ~~~~~~~~~~w~~iA~ryk~~~~V-i~el~NEP~~----------~~~~~w~~~~~~~i~aIR~~~~~ 175 (340)
T 3qr3_A 119 GPTNAQFTSLWSQLASKYASQSRV-WFGIMNEPHD----------VNINTWAATVQEVVTAIRNAGAT 175 (340)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTE-EEECCSCCCS----------SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcE-EEEecCCCCC----------CCHHHHHHHHHHHHHHHHhhCCC
Confidence 24677777766666542 2 3466 4777666642 23556677888888999888766
No 182
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=66.68 E-value=25 Score=29.25 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=39.7
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
+..+.++...|.+.+.+...+..|.+.|+++.++++|.+.+.-.+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L 191 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGL 191 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHHHH
Confidence 667889999999998899999999999999999999999875443
No 183
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=66.57 E-value=24 Score=30.44 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=38.5
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.+..+.++...|...+.+...+..|+++|++..++++|.+.+.-.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~ 237 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVT 237 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC---
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHH
Confidence 467788999999999889999999999999999999999986543
No 184
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=66.27 E-value=20 Score=28.09 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=37.8
Q ss_pred hhcCCCChhHHHHHhC--CCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 330 RLKDGFSPNLFFERTG--INIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~--~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
.+..|++++++..++. .+...+...|+.|++.|.+..+++.+.|..
T Consensus 83 P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~~~v~Lp~ 130 (135)
T 2v9v_A 83 PLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAG 130 (135)
T ss_dssp TTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSSEEEETT
T ss_pred CCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecCCEEECCC
Confidence 4568999999988764 344456788999999999999999999964
No 185
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=66.01 E-value=20 Score=32.13 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=38.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CCCEE
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GINRL 131 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv~ri 131 (391)
+.+-|-+|||.+..-..+.+++++..+++.. ++.+++- +.+.+.++.--++ |..=|
T Consensus 38 GAdiIDIg~g~~~v~~~ee~~rvv~~i~~~~----~~pisID----T~~~~v~~aAl~a~~Ga~iI 95 (262)
T 1f6y_A 38 GARALDLNVGPAVQDKVSAMEWLVEVTQEVS----NLTLCLD----STNIKAIEAGLKKCKNRAMI 95 (262)
T ss_dssp TCSEEEEBCC----CHHHHHHHHHHHHHTTC----CSEEEEE----CSCHHHHHHHHHHCSSCEEE
T ss_pred CCcEEEECCCCCCCChHHHHHHHHHHHHHhC----CCeEEEe----CCCHHHHHHHHhhCCCCCEE
Confidence 4688999998776667778999999998742 4577774 5677777776665 75433
No 186
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=65.57 E-value=10 Score=30.27 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=44.7
Q ss_pred ecCHhhHHHHHHHHhhhh--cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc----C-----CeEEeCcc
Q psy2383 314 KIEKKCLIFEFMLNALRL--KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN----N-----KNIKPTSF 376 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~--~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~----~-----~~~~lT~~ 376 (391)
.++..+..+-..+..... ..+.+.+.++++.|.+...+...++.|++.|++... . +.+.||+.
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL 102 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPL 102 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHH
Confidence 367776543322222211 345789999999999998999999999999999872 2 36667764
No 187
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=65.33 E-value=20 Score=29.71 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=39.6
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
+..+.++...|.+.+.+...+..|.+.|+++.+++++.+.+.-.+
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L 184 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLAAL 184 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHH
Confidence 677889999999998899999999999999999999999875443
No 188
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=65.24 E-value=17 Score=30.22 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=36.9
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
+..+.++...|.+.+.+...+..|.++|++..++++|.+.+
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d 205 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFG 205 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEEET
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEEe
Confidence 56788999999999889999999999999999999998764
No 189
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=65.13 E-value=11 Score=33.56 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=37.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHH
Q psy2383 341 FERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 341 ~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i 384 (391)
.+.||++...++..+..|.++|+++.+...++||+.|+-.....
T Consensus 30 ~~~~Gi~e~avRtAlsRL~~~G~L~~~~~GY~LT~~~~~~~~~~ 73 (247)
T 3kfw_X 30 TADFGIKETTLRVALTRMVGAGDLVRSADGYRLSDRLLARQRRQ 73 (247)
T ss_dssp HTTTTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHcCCeeccCCceeeCHHHHHHHHHH
Confidence 45778887778999999999999999888899999998765543
No 190
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=64.89 E-value=21 Score=27.88 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=40.9
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---C--CeEEeCcchHHHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---N--KNIKPTSFGRYFLND 383 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~--~~~~lT~~G~~~~~~ 383 (391)
..++...++.+..|.+...+...++.|++.|||+.. + ..+.++..|......
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~ 95 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKD 95 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHHH
Confidence 367889999999999988889999999999999974 2 346677676544443
No 191
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=64.78 E-value=15 Score=34.16 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=45.5
Q ss_pred hhhcCCCChhHHHHHh--CCCHHHHHHHHHHHHHCCCeEEcCCe--EEeCcch-HHHHHHHH
Q psy2383 329 LRLKDGFSPNLFFERT--GINIKIIESKLKNAEKLGLLKRNNKN--IKPTSFG-RYFLNDLQ 385 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~--~~~~~~~~~~l~~l~~~gl~~~~~~~--~~lT~~G-~~~~~~i~ 385 (391)
++..+.+....+.++| +++...++..|+.|++.|+++..-+. -.+|.+| ++|.+.+.
T Consensus 31 l~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~HgsAgript~~g~r~yvd~l~ 92 (338)
T 1stz_A 31 IENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLRFYYEEML 92 (338)
T ss_dssp HHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHHHHHHHHH
T ss_pred HHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccCcceecCCcccchhhhhhhh
Confidence 5667789999999999 78888899999999999999876432 2468778 66676654
No 192
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=64.71 E-value=39 Score=30.03 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=57.0
Q ss_pred cEEEEee--CCCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe-----
Q psy2383 104 ISITLEA--NPSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI----- 174 (391)
Q Consensus 104 ~eit~e~--~p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI----- 174 (391)
..+.+.. -+...+ ++.++.++++|++.|.+......+.. . ....+.+++.+..+.++++ +.-.++.+-
T Consensus 17 ~~~gi~~~~~~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~ 93 (295)
T 3cqj_A 17 IPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDERL-S--RLDWSREQRLALVNAIVETGVRVPSMCLSAHRRF 93 (295)
T ss_dssp CCEEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECCSSHHHH-G--GGGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTS
T ss_pred ccceeeeecCCCCCCHHHHHHHHHhcCCCEEEEecCCccccc-C--cccCCHHHHHHHHHHHHHcCCeEEEEecCcccCC
Confidence 3445543 233343 67889999999999999876543221 1 0123556666666777777 542222211
Q ss_pred -cCCCC-----CCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 175 -YALPN-----QTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 175 -~GlPg-----qt~e~~~~~l~~~~~l~~~~is~y 203 (391)
++-|. ++.+.+.+.++.+.++|++.|.+.
T Consensus 94 ~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~ 128 (295)
T 3cqj_A 94 PLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLA 128 (295)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 11111 124667888888899999988764
No 193
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=64.12 E-value=26 Score=29.60 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=36.9
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
+..+.++...|.+.+.+...+..|+++|++..++++|.+.+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d 228 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYG 228 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEEee
Confidence 56788999999999889999999999999999999998754
No 194
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=64.09 E-value=24 Score=29.91 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=39.8
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.+..+.++...|.+.+.+...+..|.++|++..+++++.+.+.-.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~ 221 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSER 221 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCHHH
Confidence 467888999999999889999999999999999999999986543
No 195
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=63.94 E-value=23 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=36.9
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
+..+.++...|...+.+...+..|.++|++..++++|.+.+
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d 208 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG 208 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEEEEe
Confidence 56788999999999889999999999999999999998764
No 196
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=63.75 E-value=34 Score=31.43 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=70.3
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.|+..|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+-.
T Consensus 45 Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~--- 119 (318)
T 3qfe_A 45 GLTGLVILGTNAEAFLLTREERAQLIATARKAVG--PDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFG--- 119 (318)
T ss_dssp TCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC--TTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC-----
T ss_pred CCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccC---
Confidence 68999998844 556788888889988877642 33455554433222 3345566677899999986655322
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCC-HHHH-HHHHHHHHh
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT-LSEL-MLDLNYAIQ 194 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt-~e~~-~~~l~~~~~ 194 (391)
|+.+.+.+.+-.+.+.++.+ +-+ ++|..|+-| --++ .+++..+.+
T Consensus 120 ----kp~~~~~l~~~f~~ia~a~~-lPi-ilYn~P~~t~g~~l~~~~~~~La~ 166 (318)
T 3qfe_A 120 ----KATTPPVIKSFFDDVSCQSP-LPV-VIYNFPGVCNGIDLDSDMITTIAR 166 (318)
T ss_dssp -----CCCHHHHHHHHHHHHHHCS-SCE-EEEECCC----CCCCHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHhhCC-CCE-EEEeCCcccCCCCCCHHHHHHHHh
Confidence 34566777777777766621 223 578889754 2211 345555555
No 197
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=63.53 E-value=76 Score=29.27 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=35.6
Q ss_pred CeeEEEEeCCCCCCCCHHHH--------HHHHHHHHHhCCCCCCcE-EEEeeCCCCCCHHHHHHhHHCCCCEEEEe
Q psy2383 68 KIHTIFIGGGTPSLISDTGL--------DYLLKNIKKLLLFKKNIS-ITLEANPSTFEIEKFHSYSIIGINRLSIG 134 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l--------~~ll~~i~~~~~~~~~~e-it~e~~p~~l~~e~l~~l~~~Gv~risiG 134 (391)
+++.|.+.+...++++++.+ +++++.+++..+ +.. +.+..+ . ...++.|.+.|++-+++.
T Consensus 206 Gad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~---~~~~ih~c~g---~-~~~l~~l~~~g~d~~~~d 274 (353)
T 1j93_A 206 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHP---NLPLILYASG---S-GGLLERLPLTGVDVVSLD 274 (353)
T ss_dssp TCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHST---TCCEEEECSS---C-TTTGGGGGGGCCSEEECC
T ss_pred CCCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhCC---CCCEEEECCC---h-HHHHHHHHhcCCCEEEeC
Confidence 56778777755567888765 445566655421 122 333222 1 246778889999977753
No 198
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=63.30 E-value=13 Score=34.14 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=18.4
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
+++.++.|+++|++.|.+- ...++.++.....+.++++
T Consensus 215 ~~~~l~~l~~~GldgIEv~------------~~~~~~~~~~~~~~lA~~~ 252 (301)
T 3o0f_A 215 SDEQLDAMIADGLDGLEVW------------HRGNPPEQRERLLTIAARH 252 (301)
T ss_dssp CHHHHHHHHHHTCCEEEEE------------STTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHCCCCEEEEe------------CCCCCHHHHHHHHHHHHHc
Confidence 4555555555555444332 1233445555555555554
No 199
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=62.69 E-value=21 Score=31.21 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=60.6
Q ss_pred cEEEEeeC-CCCCC-HHHHHHhHHCCCCEEEEecCCCCHHHH-HH-hCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC
Q psy2383 104 ISITLEAN-PSTFE-IEKFHSYSIIGINRLSIGIQSFNNKYL-NI-LGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP 178 (391)
Q Consensus 104 ~eit~e~~-p~~l~-~e~l~~l~~~Gv~risiGvqS~~~~~l-~~-l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP 178 (391)
..+.+.+. -...+ ++.++.++++|++.|.+......+.-. .. .....+.+++.+..+.++++ +. +..-- ..+
T Consensus 10 mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-i~~~~--~~~ 86 (262)
T 3p6l_A 10 WRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIK-IVGTG--VYV 86 (262)
T ss_dssp EEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCE-EEEEE--EEC
T ss_pred cEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCe-EEEEe--ccC
Confidence 45565542 11123 678999999999999998654211000 00 01234566677777777777 65 32211 123
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 179 NQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
..+.+.+.+.++.+.++|++.|.+.
T Consensus 87 ~~~~~~~~~~i~~A~~lGa~~v~~~ 111 (262)
T 3p6l_A 87 AEKSSDWEKMFKFAKAMDLEFITCE 111 (262)
T ss_dssp CSSTTHHHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHHHHcCCCEEEec
Confidence 4678889999999999999998775
No 200
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=62.57 E-value=12 Score=34.67 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=42.7
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFL 381 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~ 381 (391)
+++.+++.++.|.+...+...|..|...|+++.+++++.+|+.+..+.
T Consensus 55 ~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 55 PRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFALTDKGAALR 102 (348)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTTTGGGS
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEecCCEEecCHHHHHHh
Confidence 588899999999998778899999999999999999999999887653
No 201
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.53 E-value=25 Score=29.82 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.+..+.++...|.+.+.+...+..|.+.|++..+++++.+.+.-.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~ 219 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDLAA 219 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeCHHH
Confidence 467888999999999889999999999999999999999886544
No 202
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=62.14 E-value=38 Score=26.15 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCe--EEeCcchH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKN--IKPTSFGR 378 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~--~~lT~~G~ 378 (391)
.+....++.+..|.+...+...|+.|++.|++..+ +.. +++|+++.
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l 107 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHI 107 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHH
Confidence 46889999999999988888999999999999753 433 56777663
No 203
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=62.10 E-value=32 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=39.6
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGR 378 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~ 378 (391)
.+.++...+.+.||++...+...|..|...|+++.. +....+++...
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~~V~~~~~ 94 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAVVAPLIT 94 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECCCHH
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEecCCH
Confidence 344788889999999988899999999999999987 67788887654
No 204
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=61.99 E-value=13 Score=35.45 Aligned_cols=85 Identities=9% Similarity=0.152 Sum_probs=56.7
Q ss_pred CCHHHHHHhHHC-CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE--------eEecCCCC--CCH
Q psy2383 115 FEIEKFHSYSII-GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL--------DLIYALPN--QTL 182 (391)
Q Consensus 115 l~~e~l~~l~~~-Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~--------dlI~GlPg--qt~ 182 (391)
-+++.|+.++++ |++.|.+++.-..+ +-.-+.+++.+.-+.+.++ +. +++ |+..|.+. +..
T Consensus 31 ~d~~~L~~i~q~~G~~gIe~~l~~~~~------g~~w~~~~i~~lk~~l~~~GL~-i~~i~s~~~~~~i~~~~~~r~~~i 103 (386)
T 3bdk_A 31 KDPVTLEEIKAIPGMQGIVTAVYDVPV------GQAWPLENILELKKMVEEAGLE-ITVIESIPVHEDIKQGKPNRDALI 103 (386)
T ss_dssp TCSSCHHHHHTSTTCCEEEECCCSSCS------SSCCCHHHHHHHHHHHHTTTCE-EEEEECCCCCHHHHTTCTTHHHHH
T ss_pred CCHHHHHHHHhcCCCCEEEeCCcccCC------CCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccccccCcHHHHHHH
Confidence 356689999999 99999998754431 2234666777777777777 54 322 23333221 245
Q ss_pred HHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 183 SELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 183 e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
+.++++++.+.++|++.| +|.+++
T Consensus 104 e~~k~~i~~aa~lGi~~v-~~nf~p 127 (386)
T 3bdk_A 104 ENYKTSIRNVGAAGIPVV-CYNFMP 127 (386)
T ss_dssp HHHHHHHHHHHTTTCCEE-EECCCS
T ss_pred HHHHHHHHHHHHcCCCEE-EEcCcc
Confidence 778889999999999977 556553
No 205
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=61.52 E-value=44 Score=29.82 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHhHH-CCCC--EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHH
Q psy2383 112 PSTFEIEKFHSYSI-IGIN--RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELML 187 (391)
Q Consensus 112 p~~l~~e~l~~l~~-~Gv~--risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~ 187 (391)
|..++++.++.|++ +|+| |+.++.+.-.+.... .+.....+.+.++++.|.++ +. |-+|+-..-+++..+.+.+
T Consensus 36 ~~~~~~~di~~~~~~~G~N~vRi~~~~~~~~~~~~~-~~p~~~~~~ld~~v~~a~~~Gi~-vild~h~~~~~~~~~~~~~ 113 (293)
T 1tvn_A 36 EKFYTAETVAKAKTEFNATLIRAAIGHGTSTGGSLN-FDWEGNMSRLDTVVNAAIAEDMY-VIIDFHSHEAHTDQATAVR 113 (293)
T ss_dssp GGGCSHHHHHHHHHHHCCSEEEEEEECCTTSTTSTT-TCHHHHHHHHHHHHHHHHHTTCE-EEEEEECSCGGGCHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEeccccCCCCCccc-cChHHHHHHHHHHHHHHHHCCCE-EEEEcCCCCccccHHHHHH
Confidence 44568899999994 9998 555555310000000 00001124566788888888 65 6677643323345666666
Q ss_pred HHHHHHh-cC-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 188 DLNYAIQ-YS-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 188 ~l~~~~~-l~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
..+.+.+ ++ -++| +|.+.=+|...- .. +...+.+..+.+.+++.+=.+
T Consensus 114 ~~~~~a~r~~~~p~V-~~el~NEP~~~~-------~~--~~~~~~~~~~~~~IR~~d~~~ 163 (293)
T 1tvn_A 114 FFEDVATKYGQYDNV-IYEIYNEPLQIS-------WV--NDIKPYAETVIDKIRAIDPDN 163 (293)
T ss_dssp HHHHHHHHHTTCTTE-EEECCSCCCSCC-------TT--TTHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHhCCCCeE-EEEccCCCCCCc-------hH--HHHHHHHHHHHHHHHhhCCCC
Confidence 6666553 22 2357 488777776421 00 133456677777777766543
No 206
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=61.20 E-value=38 Score=29.82 Aligned_cols=115 Identities=7% Similarity=-0.035 Sum_probs=61.1
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC--C---CCHHHHHHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP--N---QTLSELMLDLN 190 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP--g---qt~e~~~~~l~ 190 (391)
++.++.++++|++.|.+-. +... .+ ...+.+.+.+..+.++++ +.-.++...+++| + +..+.+.+.++
T Consensus 18 ~~~l~~~~~~G~~~vEl~~----~~~~-~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (286)
T 3dx5_A 18 TDIVQFAYENGFEGIELWG----THAQ-NL-YMQEYETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAI 91 (286)
T ss_dssp HHHHHHHHHTTCCEEEEEH----HHHH-HH-HHHCHHHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcc----cccc-cc-cccCHHHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 5788889999999888732 1100 01 012345555666666666 5422221122333 2 13456777888
Q ss_pred HHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 191 YAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 191 ~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
.+.++|++.|.+++-...++ ... ....+...+.+..+.+...+.|..
T Consensus 92 ~A~~lG~~~v~~~~g~~~~~-----~~~--~~~~~~~~~~l~~l~~~a~~~Gv~ 138 (286)
T 3dx5_A 92 LANWFKTNKIRTFAGQKGSA-----DFS--QQERQEYVNRIRMICELFAQHNMY 138 (286)
T ss_dssp HHHHHTCCEEEECSCSSCGG-----GSC--HHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHhCCCEEEEcCCCCCcc-----cCc--HHHHHHHHHHHHHHHHHHHHhCCE
Confidence 88889998887754221110 000 001123345556666777777763
No 207
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.16 E-value=35 Score=29.43 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=39.8
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~ 378 (391)
.+..+.++...|...+.+...+..|.+.|++..+++++.+.+.-.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~~ 221 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGE 221 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEecHHH
Confidence 467888999999999889999999999999999999999886543
No 208
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=61.13 E-value=26 Score=29.46 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=39.6
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGR 378 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~ 378 (391)
..+..+.++...|.+.+.+...+..|.++|++..+ ++.+.+.+.-.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~d~~~ 212 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQK 212 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESCHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEEcCHHH
Confidence 35678889999999998899999999999999997 88998876543
No 209
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=61.07 E-value=33 Score=31.10 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=65.2
Q ss_pred eEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC----CH-------HHHHHhHHCCCCEEEEecCCC
Q psy2383 70 HTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF----EI-------EKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 70 ~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l----~~-------e~l~~l~~~Gv~risiGvqS~ 138 (391)
..++.||=|||. .+++.+++.. ++.+.+-++|..- ++ +.++.++++|++.|.+|+-+-
T Consensus 67 ~~l~~GGlTPS~-------g~i~~a~~~~----~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~ 135 (287)
T 3iwp_A 67 SGLSEGGTTPSM-------GVLQVVKQSV----QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTE 135 (287)
T ss_dssp BCGGGTCBCCCH-------HHHHHHHTTC----CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT
T ss_pred CCCCCCCCCCCH-------HHHHHHHHhc----CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCC
Confidence 345677778864 4455555543 3567887877642 32 467788889999999998553
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 139 NNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 139 ~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
|- ..+.+...+.++.+... . +.+.--|-. + .+..+.++.+.++++++|-.
T Consensus 136 dg--------~iD~~~~~~Li~~a~~l-~-vTFHRAFD~---~-~d~~~Ale~Li~lGvdrILT 185 (287)
T 3iwp_A 136 DG--------HIDKELCMSLMAICRPL-P-VTFHRAFDM---V-HDPMAALETLLTLGFERVLT 185 (287)
T ss_dssp TS--------CBCHHHHHHHHHHHTTS-C-EEECGGGGG---C-SCHHHHHHHHHHHTCSEEEE
T ss_pred CC--------CcCHHHHHHHHHHcCCC-c-EEEECchhc---c-CCHHHHHHHHHHcCCCEEEC
Confidence 31 23455555556555433 1 222222211 1 12457788889999998854
No 210
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=60.96 E-value=35 Score=27.43 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=38.0
Q ss_pred HHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCcee
Q psy2383 190 NYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 190 ~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 246 (391)
+.+.+++++.|-+||+...-. .+.+++...++...+.+.|.+.||..+
T Consensus 66 ~~a~kv~~~~ivlYPyAHLSs---------~La~P~~A~~iL~~le~~L~~~g~eV~ 113 (143)
T 2hl0_A 66 KVAEQVKAENVFVYPFAHLSS---------ELAKPSVAMDILNRVYQGLKERGFNVG 113 (143)
T ss_dssp HHHHHHTCCEEEEEECGGGCS---------SBCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhcCCCEEEEeccccccC---------ccCChHHHHHHHHHHHHHHHhCCCeEE
Confidence 344467999999999886532 356678889999999999999998765
No 211
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=60.94 E-value=18 Score=32.22 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred ChhHHHHHhCCCHHHHHHH---HHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIESK---LKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~---l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+...-+++.+++-..+-.. |+.-...-|+.+++..+.||+.|..++....
T Consensus 26 s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 78 (310)
T 2esn_A 26 NVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVA 78 (310)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHhhCCcceeecCCCccccHHHHHHHHHHH
Confidence 4455566667765555444 4445556899999999999999999988764
No 212
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=60.87 E-value=23 Score=31.49 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=44.3
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC--CeEEeCcchHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN--KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~--~~~~lT~~G~~~~~~i 384 (391)
.++...++.+..|.+...+...|..|++.||+..++ ++++|+++=..+....
T Consensus 20 ~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~lg~~~ 73 (260)
T 3r4k_A 20 LEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRLAALR 73 (260)
T ss_dssp SEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHHHHHHH
Confidence 468889999999999888889999999999999986 6999998866665544
No 213
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=60.60 E-value=17 Score=30.71 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcc
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSF 376 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~ 376 (391)
.+..+.++...|.+.+.+...+..|.+.|++..+++++.+.+.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 220 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDR 220 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCH
Confidence 3567889999999998899999999999999999999998754
No 214
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*
Probab=60.51 E-value=59 Score=30.16 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=72.3
Q ss_pred CCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC------------CC
Q psy2383 115 FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN------------QT 181 (391)
Q Consensus 115 l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg------------qt 181 (391)
..++.++.|+++|+|-|-+.+. +..+...+.....+.+.++++.|.++ +. |-+|+- +.|+ .+
T Consensus 86 ~~~~di~~ik~~G~N~VRi~~~---~~~~~~~~~~~~l~~ld~~v~~a~~~Gi~-Vild~H-~~~~~~~~~~~~~~~~~~ 160 (359)
T 4hty_A 86 FSKKHFEVIRSWGANVVRVPVH---PRAWKERGVKGYLELLDQVVAWNNELGIY-TILDWH-SIGNLKSEMFQNNSYHTT 160 (359)
T ss_dssp CSHHHHHHHHHTTCSEEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEEC-CEEETTTTEESSGGGCCC
T ss_pred cCHHHHHHHHhcCCCEEEEecc---HHHhhccCCHHHHHHHHHHHHHHHHCCCE-EEEEcC-CCCCCCcccccCCcchhH
Confidence 4578899999999995555432 22222111112345567888888888 65 666653 2221 35
Q ss_pred HHHHHHHHHHHHhc-C-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 182 LSELMLDLNYAIQY-S-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 182 ~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
.+.+.+.++.+.+- + -+.|-.|.+.=+|...-.... ..+.+.....+..+.+.+++.+-.+
T Consensus 161 ~~~~~~~~~~la~ryk~~p~Vi~~el~NEP~~~~~~~~---~~~~~~~~~~~~~~~~~IR~~dp~~ 223 (359)
T 4hty_A 161 KGETFDFWRRVSERYNGINSVAFYEIFNEPTVFNGRLG---IATWAEWKAINEEAITIIQAHNPKA 223 (359)
T ss_dssp HHHHHHHHHHHHHHTTTCTTEEEEESCSEECCGGGTTC---CCCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeccCCCCCCCCcC---CCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777777777643 2 334656777767754321111 1233455667777778887776654
No 215
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=60.49 E-value=30 Score=29.56 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=38.2
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSF 376 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~ 376 (391)
+..+.++...|.+.+.+...+..|.++|+++.+++++.+.+.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I~d~ 228 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDA 228 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEESCG
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEEeCh
Confidence 678889999999998899999999999999999999998764
No 216
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=60.43 E-value=24 Score=28.16 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=34.6
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHH---CCCeEEcC-----CeEEeCcchHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEK---LGLLKRNN-----KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~---~gl~~~~~-----~~~~lT~~G~~~~~~i 384 (391)
+...-++..+++...+...++.|++ .-|+.... ..+.||+.|..++...
T Consensus 40 S~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a 96 (135)
T 2ijl_A 40 SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERY 96 (135)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHH
Confidence 4555667778876666555555555 47898885 5899999999988765
No 217
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=59.96 E-value=9.3 Score=26.94 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE----EcCCeEEeCcc
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK----RNNKNIKPTSF 376 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~----~~~~~~~lT~~ 376 (391)
+.-++...-+.++.++..|+..-+..-..++.|++.|.++ ..|..|++|+.
T Consensus 13 i~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 13 INYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 3344555567888999999998877778999999988764 33567777764
No 218
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=59.68 E-value=24 Score=30.69 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=36.1
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+...-++..+++-..+. ..|+.-...-|+.+++.++.||+.|..+...+-
T Consensus 17 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 69 (291)
T 3szp_A 17 SYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCS 69 (291)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEEETTEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEeecCCCcccCHhHHHHHHHHH
Confidence 34455566666655443 445555567899999999999999999987653
No 219
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=59.55 E-value=19 Score=30.21 Aligned_cols=46 Identities=7% Similarity=0.084 Sum_probs=40.0
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
.+..+.++...|.+.+.+...+..|.++|++..+++++.+.+.-.+
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L 208 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALL 208 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHH
Confidence 3577889999999998899999999999999999999999875443
No 220
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=58.43 E-value=45 Score=30.03 Aligned_cols=118 Identities=9% Similarity=0.077 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
|+..|.-..+.+.++|+.-|-+|=-|.. ..+|.+ .|.+++...++.+.+. .+ |.+|+=+|+ |.++++.
T Consensus 21 ~~a~D~~sA~~~~~aG~~ai~vsg~s~a----~~~G~pD~~~vt~~em~~~~~~I~~~~~~p-viaD~d~Gy-g~~~~~~ 94 (275)
T 2ze3_A 21 PNAWDVASARLLEAAGFTAIGTTSAGIA----HARGRTDGQTLTRDEMGREVEAIVRAVAIP-VNADIEAGY-GHAPEDV 94 (275)
T ss_dssp CEESSHHHHHHHHHHTCSCEEECHHHHH----HHSCCCSSSSSCHHHHHHHHHHHHHHCSSC-EEEECTTCS-SSSHHHH
T ss_pred ecccCHHHHHHHHHcCCCEEEECcHHHH----HhCCCCCCCCCCHHHHHHHHHHHHhhcCCC-EEeecCCCC-CCCHHHH
Confidence 4556888888888999999888721211 135654 4889988888888877 67 999999996 7899999
Q ss_pred HHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.+++..+.+.|+.-|.+=.-...+| ..+-+.++..+....+.+.-...|-
T Consensus 95 ~~~v~~l~~aGaagv~iED~~~~~~--------k~l~~~~e~~~~I~aa~~a~~~~g~ 144 (275)
T 2ze3_A 95 RRTVEHFAALGVAGVNLEDATGLTP--------TELYDLDSQLRRIEAARAAIDASGV 144 (275)
T ss_dssp HHHHHHHHHTTCSEEEEECBCSSSS--------SCBCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEECCCcCCCC--------CccCCHHHHHHHHHHHHHhHhhcCC
Confidence 9999999999998886554322111 1345566666666666666554343
No 221
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=58.32 E-value=15 Score=33.46 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=40.4
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcch
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFG 377 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G 377 (391)
..++.+++.++.|.+...+...|..|...|+++.+++++.+|+.+
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~ 82 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDS 82 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHH
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCHHH
Confidence 457888999999998777888999999999999999999999988
No 222
>3lfk_A MSCTV, MARR like protein, TVG0766549; multiple antibiotic resistance regulator, transcriptional regulator, winged helix-turn-helix motif; HET: CIT; 1.60A {Thermoplasma volcanium}
Probab=57.65 E-value=18 Score=26.78 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=46.1
Q ss_pred ecCHhhHHHHHHHHhhhhcCC-CChhHHHHHhCC-CHHHHHHHHHHHHHCCCeEEc----CCeEEeCcchHHHHHHHH
Q psy2383 314 KIEKKCLIFEFMLNALRLKDG-FSPNLFFERTGI-NIKIIESKLKNAEKLGLLKRN----NKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 314 ~l~~~~~~~e~~~~~lr~~~g-~~~~~~~~~~~~-~~~~~~~~l~~l~~~gl~~~~----~~~~~lT~~G~~~~~~i~ 385 (391)
.++.++.. .+| -+....| +.+-+++...|+ |++ ..|..|..-|+...| ++.|.||.+|.++...|-
T Consensus 33 dms~dev~--ll~-f~k~hggkiplyriknesg~kdpe---~vlknl~dygfa~~dkerlgekiilt~egefv~qair 104 (129)
T 3lfk_A 33 DMSQDEVS--LLL-FLKTHGGKIPLYRIKNETGLKDPE---SVLKNLMDYGFALEDKERLGEKIVLTSEGEFVAQAIR 104 (129)
T ss_dssp GCCHHHHH--HHH-HHHHTTTEEEHHHHHHHSCCSSHH---HHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred ccchhhhh--hhh-hhhccCCccceEEeccccCCCCHH---HHHHHHHhccccccchHHhCCeeEEcccchhHHHHHH
Confidence 45555532 222 2444554 777888888886 443 457888889999776 678999999999988774
No 223
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=57.38 E-value=27 Score=31.45 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=63.7
Q ss_pred CeeEEEEeCCCCCC-CCHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEe-cC--------
Q psy2383 68 KIHTIFIGGGTPSL-ISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIG-IQ-------- 136 (391)
Q Consensus 68 ~~~~i~~gGGtps~-l~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiG-vq-------- 136 (391)
++..|.|.= -|++ .+++.++. ++.+.+.+ +..+.+|. +|.-.+++.++.|++.|+..|.+- .+
T Consensus 119 kLG~vL~Q~-Ppsf~~~~~~~~~-L~~l~~~l----~~~~AvE~Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~ 192 (273)
T 1vpq_A 119 RLKMTLAQF-PFSFKFSRKNVEY-LEKLRESY----PYELAVEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYR 192 (273)
T ss_dssp CEEEEEEEC-CTTCCCCHHHHHH-HHHHHHHC----CSCEEEECCBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCC
T ss_pred CEEEEEEEc-CCCCCCCHHHHHH-HHHHHHHc----CCCEEEEccCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCcc
Confidence 466677662 2333 23467777 66665554 35799999 577789999999999999998754 21
Q ss_pred ---CCCHHHHHHhCCC---------------CCHHHHHHHHHHHHhh-cccceEeEecC
Q psy2383 137 ---SFNNKYLNILGRT---------------HDSKQAKYAIEIAKQY-FNNFNLDLIYA 176 (391)
Q Consensus 137 ---S~~~~~l~~l~R~---------------~~~~~~~~~i~~~~~~-~~~v~~dlI~G 176 (391)
|.+-..++..||. .+.++..+..+.+++. -..-.+.++|.
T Consensus 193 ~~~t~~~~yvRlHG~~~~~w~~~~~~~y~~~Y~~~eL~~wa~~i~~~~~~~~~vyv~Fn 251 (273)
T 1vpq_A 193 PITTTDYAYFRFHGRNERWFEAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFN 251 (273)
T ss_dssp CCCSSSEEEEEECCCCTTTTTCCGGGTTCCCCCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred cccCCCceEEEEeCCCccccccccccccccCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 3333334444543 4666666666666654 22234445554
No 224
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=56.81 E-value=86 Score=28.33 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~ 125 (391)
.|+..+.+++... +++.|.+.+ |-..+.|..+.+++..+++.++-.+.+.+.+=++ ...-....+..+ +
T Consensus 150 ~~~~~~~~~~~~~-------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~-~ 220 (293)
T 3ewb_X 150 AFLIEAVQTAIDA-------GATVINIPD-TVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAI-E 220 (293)
T ss_dssp HHHHHHHHHHHHT-------TCCEEEEEC-SSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHc-------CCCEEEecC-CCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHH-H
Confidence 4555555555432 467899987 7777899999999999999875222244555553 222245555555 5
Q ss_pred CCCCEEEEecCCCC
Q psy2383 126 IGINRLSIGIQSFN 139 (391)
Q Consensus 126 ~Gv~risiGvqS~~ 139 (391)
+|+++|.-.+-.+-
T Consensus 221 aGa~~vd~sv~GlG 234 (293)
T 3ewb_X 221 NGARRVEGTINGIG 234 (293)
T ss_dssp TTCCEEEEBGGGCC
T ss_pred hCCCEEEeeccccc
Confidence 89999988776544
No 225
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=56.76 E-value=39 Score=29.49 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=36.3
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
+..+.++...|...+.+...+..|.+.|++..++++|.+.+
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d 258 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG 258 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEEC-
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEEEEe
Confidence 56778999999999889999999999999999999998764
No 226
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=56.39 E-value=1.2e+02 Score=27.81 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=69.7
Q ss_pred CeeEEEEeC--CCCCCCCHHHHHHHH-HHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH
Q psy2383 68 KIHTIFIGG--GTPSLISDTGLDYLL-KNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN 144 (391)
Q Consensus 68 ~~~~i~~gG--Gtps~l~~~~l~~ll-~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~ 144 (391)
+++.|++.+ ++..+++++.++++. ..+++.+.--.. +.+--.+.. ....++.+.+.|++-||+.- +.+
T Consensus 203 Gad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~--~~iih~~g~-~~~~l~~~~~~g~d~i~~d~-~~~----- 273 (348)
T 4ay7_A 203 GADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNS--VTVLHICGN-VNPILSDMADCGFEGLSVEE-KIG----- 273 (348)
T ss_dssp TCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSS--EEEEECCSC-CHHHHHHHHTSCCSEEECCG-GGC-----
T ss_pred CCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccC--CcEEEecCC-cHHHHHHHHHhccccccccc-hhh-----
Confidence 467777776 334578999887653 222222111111 222222332 35689999999999876431 111
Q ss_pred HhCCCCCHHHHHHHHHHHHh-h-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCC
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQ-Y-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 222 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~-~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p 222 (391)
+.+ ++-+.+.. . +. =|+|=..-|..-|.+++++.++.+++-+. +|---...+.|+||
T Consensus 274 ------~~~---~~k~~~g~~~~l~-Gnldp~~~l~~g~~e~i~~~v~~~l~~~g-~I~~~Ghgi~p~tp---------- 332 (348)
T 4ay7_A 274 ------SAK---KGKEVIGTRARLV-GNVSSPFTLLPGPVDKIKAEAKEALEGGI-DVLAPGCGIAPMTP---------- 332 (348)
T ss_dssp ------CHH---HHHHHHTTSSEEE-EEECCCCCCTTCCHHHHHHHHHHHHHTTC-SEEEESSSCCTTCC----------
T ss_pred ------HHH---HHHHHhCCCEEEE-cCCCChHhhcCCCHHHHHHHHHHHHhCCC-CEEeCCCccCCCCC----------
Confidence 111 11111111 1 21 23442222445688999998888888554 33111122333332
Q ss_pred CHHHHHHHHHHHHHH
Q psy2383 223 SNDENAVMQDKITSL 237 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~ 237 (391)
.+....|.+.++++
T Consensus 333 -~env~a~v~av~ey 346 (348)
T 4ay7_A 333 -LENVKALVAARDEF 346 (348)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 45566677666554
No 227
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=56.15 E-value=27 Score=31.00 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=37.0
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+...-+++.+++-..+. ..|+.....-|+.+++.++.||+.|..++..+-
T Consensus 18 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~ 70 (305)
T 3fxq_A 18 SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHAR 70 (305)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEEecCCCccCCHhHHHHHHHHH
Confidence 45555667777655553 445555567899999999999999999987653
No 228
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=56.11 E-value=54 Score=30.10 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=43.2
Q ss_pred CeeEEEEeC---CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGG---GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gG---Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
.+-+++.=+ |.||. +++.++++++.|++..+. .+.+|.......-.++.++.+.+..-.-.|+.+=|
T Consensus 47 aivHlHvRdp~dG~ps~-d~~~~~e~~~~IR~~~d~--iI~~TTgg~~~~~~eerla~~~~~~Pe~aSln~gs 116 (311)
T 3e49_A 47 AVIHLHARDPRDGRPTQ-DPAAFAEFLPRIKSNTDA--VINLTTGGSPHMTVEERLRPATHYMPELASLNMGS 116 (311)
T ss_dssp SEEEECEECTTTCCEEC-CHHHHTTHHHHHHHHCCC--EEEECSCSCTTSCHHHHHHHHHHHCCSEEEEECSC
T ss_pred cEEEEeecCCCCCCcCC-CHHHHHHHHHHHHHhCCc--EEEECCCCCCCCCHHHHHHHHHhcCCCeeeecCCC
Confidence 455666554 78886 888999999999987532 23334333333223567777777666666776656
No 229
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=55.91 E-value=62 Score=29.93 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~ 125 (391)
.|+..+.+++.. .+++.|++.+ |-..+.|..+.+++..+++.++ +..+.+=++ .+.-....+..+ +
T Consensus 169 ~~~~~~~~~~~~-------~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~p---~~~i~~H~Hnd~GlA~AN~laAv-~ 236 (337)
T 3ble_A 169 DYVKSLVEHLSK-------EHIERIFLPD-TLGVLSPEETFQGVDSLIQKYP---DIHFEFHGHNDYDLSVANSLQAI-R 236 (337)
T ss_dssp HHHHHHHHHHHT-------SCCSEEEEEC-TTCCCCHHHHHHHHHHHHHHCT---TSCEEEECBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHH-------cCCCEEEEec-CCCCcCHHHHHHHHHHHHHhcC---CCeEEEEecCCcchHHHHHHHHH-H
Confidence 344455555543 2578899987 7778899999999999999874 345555553 333345566666 5
Q ss_pred CCCCEEEEecCCCC
Q psy2383 126 IGINRLSIGIQSFN 139 (391)
Q Consensus 126 ~Gv~risiGvqS~~ 139 (391)
+|+++|.-.+-.+-
T Consensus 237 aGa~~vd~tv~GlG 250 (337)
T 3ble_A 237 AGVKGLHASINGLG 250 (337)
T ss_dssp TTCSEEEEBGGGCS
T ss_pred hCCCEEEEeccccc
Confidence 79999997765543
No 230
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=55.76 E-value=89 Score=32.22 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=65.7
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC----CCC---CCHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA----LPN---QTLSELML 187 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G----lPg---qt~e~~~~ 187 (391)
....++...++|++.|.+-. |.+ ..+.+..+++.+++. .. +..++.+. =|. -+++.+.+
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~-s~n-----------~l~~l~~~i~~ak~~G~~-v~~~i~~~~d~~dp~r~~~~~e~~~~ 265 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFD-SLN-----------YLPNMLLGMEAAGSAGGV-VEAAISYTGDVADPSRTKYSLQYYMG 265 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEEC-SSC-----------CHHHHHHHHHHHHTTTSE-EEEEEECCSCTTCTTCCTTCHHHHHH
T ss_pred hHHHHHHHHhcCcCEEEEEe-cHH-----------HHHHHHHHHHHHHHcCCe-EEEEEEeeccccCCCCCCCCHHHHHH
Confidence 46778888899999888764 333 356788888888888 43 66666554 343 27899999
Q ss_pred HHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 188 DLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 188 ~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
.++.+.+.|++.|.+-- |. ....+....++....++.+
T Consensus 266 ~a~~l~~~Ga~~I~l~D------T~-------G~~~P~~v~~lV~~lk~~~ 303 (718)
T 3bg3_A 266 LAEELVRAGTHILCIKD------MA-------GLLKPTACTMLVSSLRDRF 303 (718)
T ss_dssp HHHHHHHHTCSEEEEEC------TT-------SCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCEEEEcC------cC-------CCcCHHHHHHHHHHHHHhC
Confidence 99999999998775542 22 1233455566665555443
No 231
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=55.51 E-value=21 Score=28.00 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=36.1
Q ss_pred CCChhH-HHHH---hCCCH--HHHHHHHHHHHHCCCeEEcC------C-----eEEeCcchHH--HHHHHHHH
Q psy2383 334 GFSPNL-FFER---TGINI--KIIESKLKNAEKLGLLKRNN------K-----NIKPTSFGRY--FLNDLQQI 387 (391)
Q Consensus 334 g~~~~~-~~~~---~~~~~--~~~~~~l~~l~~~gl~~~~~------~-----~~~lT~~G~~--~~~~i~~~ 387 (391)
|.++.. +.+. ++.++ ..+.+.|..|++.|+++... . -+++|++|.. ........
T Consensus 34 GYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~~~ 106 (122)
T 1bm9_A 34 GLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVE 106 (122)
T ss_dssp STTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHHHH
Confidence 555443 4332 45443 45789999999999997432 2 2889999999 66655443
No 232
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=54.69 E-value=33 Score=30.73 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=42.4
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFLNDL 384 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~~~i 384 (391)
.++...++.+..|.+...+...|..|++.||+..++ ++++|+++=..+....
T Consensus 44 ~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~lg~~~ 96 (275)
T 3mq0_A 44 RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHSLRWANGF 96 (275)
T ss_dssp SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHHHHHHH
Confidence 468899999999998777889999999999999875 6899998866665544
No 233
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=54.69 E-value=55 Score=29.27 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeCCCC-CCHHHHHHhHHCCCCEEEEecCCCCH---------HHHHHhCCCCCHHHH
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEANPST-FEIEKFHSYSIIGINRLSIGIQSFNN---------KYLNILGRTHDSKQA 155 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~-l~~e~l~~l~~~Gv~risiGvqS~~~---------~~l~~l~R~~~~~~~ 155 (391)
.+.+.++.+++.-+. .-+.+-.-+.|+. -+.+.++.|.++|++-|.+|+--.|| ...+.+..+.+.+++
T Consensus 4 ri~~~f~~~~~~~~~-ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~ 82 (267)
T 3vnd_A 4 RYQAKFAALKAQDKG-AFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDC 82 (267)
T ss_dssp HHHHHHHHHHHHTCC-EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhcCCC-eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHH
Confidence 456666666543211 1122222235532 15678888999999999999554332 223455578899999
Q ss_pred HHHHHHHHhh-cccceEeEecCCCCCCHH--HHHHHHHHHHhcCCCeEEEec
Q psy2383 156 KYAIEIAKQY-FNNFNLDLIYALPNQTLS--ELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 156 ~~~i~~~~~~-~~~v~~dlI~GlPgqt~e--~~~~~l~~~~~l~~~~is~y~ 204 (391)
.+.++.+++. .. +-+-+| +.-+ ... .+.+-++.+.+.|++.+.+-.
T Consensus 83 ~~~v~~ir~~~~~-~Pivlm-~Y~n-pv~~~g~e~f~~~~~~aGvdgvii~D 131 (267)
T 3vnd_A 83 FDIITKVRAQHPD-MPIGLL-LYAN-LVFANGIDEFYTKAQAAGVDSVLIAD 131 (267)
T ss_dssp HHHHHHHHHHCTT-CCEEEE-ECHH-HHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHHhcCCC-CCEEEE-ecCc-HHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 9999999875 32 335454 2100 010 135567788888999886643
No 234
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=54.07 E-value=1.3e+02 Score=27.43 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=38.2
Q ss_pred CeeEEEEeCCCCCCCCHHHH--------HHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEE
Q psy2383 68 KIHTIFIGGGTPSLISDTGL--------DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSI 133 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l--------~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risi 133 (391)
+++.|.+.+...++++++.+ +++++.+++. + +..+..=+. + - ...++.+++.|++-+++
T Consensus 192 Gad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~---g~~~i~~~~-g-~-~~~l~~l~~~g~d~~~~ 258 (338)
T 2eja_A 192 GADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-S---DTPVIYFFR-G-S-SSFIDLAVDYRADALSV 258 (338)
T ss_dssp TCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-C---CCCEEEEES-S-H-HHHHHHHTTSCCSEEEC
T ss_pred CCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-C---CCCEEEEcC-C-c-HHHHHHHHHcCCCEEEe
Confidence 57778887776678888765 4556666654 1 222332221 2 2 67899999999997765
No 235
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=53.97 E-value=38 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=31.2
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
+++.+.++++.|.+...+...++.|++.|||+..
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4889999999999988899999999999999874
No 236
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=53.85 E-value=29 Score=30.36 Aligned_cols=79 Identities=9% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHhHHCCCCEEEEe-cCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCC--C-----CCHHHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIG-IQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP--N-----QTLSELML 187 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiG-vqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP--g-----qt~e~~~~ 187 (391)
++.++.++++|++.|.+. ..... .... ..+ ..+..+.++++ +.-.++..-+.+. . ++.+.+.+
T Consensus 17 ~~~l~~~~~~G~~~vEl~~~~~~~----~~~~-~~~---~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (278)
T 1i60_A 17 KLDLELCEKHGYDYIEIRTMDKLP----EYLK-DHS---LDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKG 88 (278)
T ss_dssp HHHHHHHHHTTCSEEEEETTTHHH----HHTT-SSC---HHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEccHHHHH----HHhc-cCC---HHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHH
Confidence 456677777777777776 43321 1111 122 22333344444 3311222222222 1 12445566
Q ss_pred HHHHHHhcCCCeEEEe
Q psy2383 188 DLNYAIQYSPPHLSLY 203 (391)
Q Consensus 188 ~l~~~~~l~~~~is~y 203 (391)
.++.+.++|++.|.+.
T Consensus 89 ~i~~a~~lG~~~v~~~ 104 (278)
T 1i60_A 89 MMETCKTLGVKYVVAV 104 (278)
T ss_dssp HHHHHHHHTCCEEEEE
T ss_pred HHHHHHHcCCCEEEEe
Confidence 6666777777776653
No 237
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=53.67 E-value=34 Score=28.59 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHhhhhc-CCCChhHHHHHhCCCHHHHHHHHHHHHHCCC-eEEcCCeEEeCcc
Q psy2383 325 MLNALRLK-DGFSPNLFFERTGINIKIIESKLKNAEKLGL-LKRNNKNIKPTSF 376 (391)
Q Consensus 325 ~~~~lr~~-~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl-~~~~~~~~~lT~~ 376 (391)
++..|+.. ..+..+++.+.+|++...+...++.|++.|+ +..+.+.+.++..
T Consensus 26 Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~~ 79 (187)
T 1j5y_A 26 IVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECCTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEECCEEEECCc
Confidence 34445533 3489999999999998888999999999999 8777778888754
No 238
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=53.57 E-value=55 Score=28.43 Aligned_cols=106 Identities=8% Similarity=-0.017 Sum_probs=60.7
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc--cceEeEecCCCC-----CCHHHHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN--NFNLDLIYALPN-----QTLSELMLD 188 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~--~v~~dlI~GlPg-----qt~e~~~~~ 188 (391)
++.++.++++|++.|.+.... . +..+..+..+.++++ +. .++...-+.-|. ++.+.+.+.
T Consensus 21 ~~~l~~~~~~G~~~vEl~~~~----~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 88 (275)
T 3qc0_A 21 AEAVDICLKHGITAIAPWRDQ----V--------AAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRA 88 (275)
T ss_dssp HHHHHHHHHTTCCEEECBHHH----H--------HHHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecccc----c--------cccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHH
Confidence 679999999999999986521 1 122344455555665 43 222211122222 134678888
Q ss_pred HHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCc
Q psy2383 189 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN----DENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 189 l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~----~~~~~~~~~~~~~L~~~Gy~ 244 (391)
++.+.++|++.|.+.+-...++ ..+. +...+.+..+.+..++.|..
T Consensus 89 i~~a~~lG~~~v~~~~g~~~~~----------~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 138 (275)
T 3qc0_A 89 VDEAAELGADCLVLVAGGLPGG----------SKNIDAARRMVVEGIAAVLPHARAAGVP 138 (275)
T ss_dssp HHHHHHTTCSCEEEECBCCCTT----------CCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCEEEEeeCCCCCC----------CcCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 9999999999998764211111 0122 22345556666677777764
No 239
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=53.26 E-value=91 Score=28.28 Aligned_cols=86 Identities=9% Similarity=0.043 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH--HhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN--ILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLS 183 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~--~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e 183 (391)
|+..|.-..+.+.++|+.-|-+| +--+. .+|.+ .|.+++...++.+.+. .+ +.+|+=+|+ |.+++
T Consensus 22 ~~a~D~~sA~~~~~aG~~ai~vs-----~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~P-viaD~d~Gy-g~~~~ 94 (295)
T 1xg4_A 22 VGTINANHALLAQRAGYQAIYLS-----GGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLP-LLVDADIGF-GSSAF 94 (295)
T ss_dssp EECSSHHHHHHHHHTTCSCEEEC-----HHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSC-EEEECTTCS-SSSHH
T ss_pred ecCcCHHHHHHHHHcCCCEEEEC-----chHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCC-EEecCCccc-CCCHH
Confidence 34467778888889999988876 22122 24554 4889998888888877 67 999999995 77999
Q ss_pred HHHHHHHHHHhcCCCeEEEec
Q psy2383 184 ELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 184 ~~~~~l~~~~~l~~~~is~y~ 204 (391)
++.++++.+.+.|+.-|.+=.
T Consensus 95 ~~~~~v~~l~~aGa~gv~iEd 115 (295)
T 1xg4_A 95 NVARTVKSMIKAGAAGLHIED 115 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEECC
Confidence 999999999999998886654
No 240
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=53.18 E-value=31 Score=31.17 Aligned_cols=116 Identities=6% Similarity=-0.123 Sum_probs=60.5
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCC---CCCHHHHHHHHHHHHhh-cccceEeEecCCC-------CCCHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGR---THDSKQAKYAIEIAKQY-FNNFNLDLIYALP-------NQTLSEL 185 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R---~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlP-------gqt~e~~ 185 (391)
++.++.++++|++.|.+.....+... ..+. ..+.+++.+.-+.+++. +.-+++..-+.+. .+..+.+
T Consensus 39 ~~~l~~aa~~G~~~VEl~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (305)
T 3obe_A 39 PNGLNRLAKAGYTDLEIFGYREDTGK--FGDYNPKNTTFIASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFW 116 (305)
T ss_dssp HHHHHHHHHHTCCEEEECCBCTTTCC--BCCC----CCCBCHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccccccc--ccCcCcccccccCHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHH
Confidence 46888999999999999864211000 0000 01111344444555666 5422232211111 1235678
Q ss_pred HHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
.+.++.+.++|.+.|.+. +.+- . . ....-+...+.+..+.+..+++|-.
T Consensus 117 ~~~i~~A~~lG~~~v~~~------~~~~--~-~-~~~~~~~~~~~l~~l~~~a~~~Gv~ 165 (305)
T 3obe_A 117 KKATDIHAELGVSCMVQP------SLPR--I-E-NEDDAKVVSEIFNRAGEITKKAGIL 165 (305)
T ss_dssp HHHHHHHHHHTCSEEEEC------CCCC--C-S-SHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHcCCCEEEeC------CCCC--C-C-CHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 888999999999998752 2110 0 0 0001123345566677777777864
No 241
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=52.81 E-value=30 Score=27.38 Aligned_cols=42 Identities=12% Similarity=0.315 Sum_probs=35.0
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 333455556789999999999998889999999999999974
No 242
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=52.12 E-value=30 Score=31.90 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=42.1
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE-cCCeEEeCcchHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR-NNKNIKPTSFGRYFL 381 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~-~~~~~~lT~~G~~~~ 381 (391)
...+.+++.+..|.+...+...|..|...|++.. +++++.+|+.+.++.
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l~ 100 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLA 100 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGS
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHHHh
Confidence 4578889999999987778889999999999987 678999999877654
No 243
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=51.64 E-value=14 Score=32.57 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=31.8
Q ss_pred ChhHHHHHhCCCHHHHHHH---HHHHHHCCCeEEcCCeEEeCcchHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIESK---LKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~---l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~ 385 (391)
+...-+++.+++-..+... |+.-...-|+.+++.++.||+.|..++..+.
T Consensus 17 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 69 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDAR 69 (294)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEEeCCCCeeECHhHHHHHHHHH
Confidence 4555666777775555444 4455556899999999999999999987654
No 244
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Probab=51.36 E-value=57 Score=29.81 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCHHHHHHhHHCCCCEEEEec--CCCCHHH-HHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC---------
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGI--QSFNNKY-LNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ--------- 180 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGv--qS~~~~~-l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq--------- 180 (391)
.++++.++.++++|+|.|-+.+ ..+.+.. --.. .....+.+.++++.|++. +. |-+|+-. .||.
T Consensus 36 ~~~~~d~~~i~~~G~n~vRi~i~~~~~~~~~~p~~~-~~~~~~~ld~~v~~a~~~Gi~-vildlh~-~pg~~~~~~~~~~ 112 (341)
T 1vjz_A 36 NFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFII-REDFFEKIDRVIFWGEKYGIH-ICISLHR-APGYSVNKEVEEK 112 (341)
T ss_dssp CCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCC-CGGGHHHHHHHHHHHHHHTCE-EEEEEEE-ETTEESCTTSCCS
T ss_pred CCCHHHHHHHHHcCCCEEEeeCCHHHhcCCCCCCcC-CHHHHHHHHHHHHHHHHcCCE-EEEEecC-CCCcccccCCCcc
Confidence 4689999999999999655543 3332210 0000 012456788999999999 75 7777643 3431
Q ss_pred -----C---HHHHHHHHHHHHh-cCC--CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 181 -----T---LSELMLDLNYAIQ-YSP--PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 181 -----t---~e~~~~~l~~~~~-l~~--~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
+ .+.+.+-.+.+.+ ++- +.+-.|.+.=+|...... ..+.+...+.+..+.+..++.+=
T Consensus 113 ~~~~~~~~~~~~~~~~~~~ia~ry~~~~~~v~~~el~NEP~~~~~~-----~~~~~~~~~~~~~~~~~IR~~~~ 181 (341)
T 1vjz_A 113 TNLWKDETAQEAFIHHWSFIARRYKGISSTHLSFNLINEPPFPDPQ-----IMSVEDHNSLIKRTITEIRKIDP 181 (341)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTTSCTTTEEEECSSCCCCCBTT-----TBCHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCCCCcc-----cccHHHHHHHHHHHHHHHHhhCC
Confidence 1 3344444444443 221 234467666566543110 11345556667777777776543
No 245
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=51.35 E-value=16 Score=32.82 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=40.6
Q ss_pred CChhH---HHHHhCCCHHHHHHHHHHHHHCCCeEEcC-C---eEEeCcchHHHHHHHH
Q psy2383 335 FSPNL---FFERTGINIKIIESKLKNAEKLGLLKRNN-K---NIKPTSFGRYFLNDLQ 385 (391)
Q Consensus 335 ~~~~~---~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~---~~~lT~~G~~~~~~i~ 385 (391)
+.... +.+.||++-..+...|..|+++|+++.+. + .++||+.|+-......
T Consensus 43 i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~~~~ 100 (266)
T 3l09_A 43 VSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTRAVA 100 (266)
T ss_dssp EEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHTTH
T ss_pred ccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHHHHH
Confidence 55554 56788998888899999999999998763 2 6999999998875443
No 246
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=51.11 E-value=28 Score=27.78 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=34.7
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 333455556789999999999998888999999999999964
No 247
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=50.89 E-value=71 Score=29.03 Aligned_cols=97 Identities=9% Similarity=0.156 Sum_probs=63.9
Q ss_pred CeeEEEEeCC--CCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGG--TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGG--tps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.++..|. ....|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 50 Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~---- 123 (304)
T 3cpr_A 50 GLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG--DRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYS---- 123 (304)
T ss_dssp TCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT--TTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSS----
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC----
Confidence 5888999884 4566788888899988887632 34556555543332 234556677789999988765543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ ++ + ++|..|+
T Consensus 124 ----~-~~~~~l~~~f~~ia~a~~lP---i-ilYn~P~ 152 (304)
T 3cpr_A 124 ----K-PSQEGLLAHFGAIAAATEVP---I-CLYDIPG 152 (304)
T ss_dssp ----C-CCHHHHHHHHHHHHHHCCSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhcCCC---E-EEEeCcc
Confidence 2 2566677766666665 44 3 4777775
No 248
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=50.79 E-value=66 Score=29.05 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.++..|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 33 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~--- 107 (294)
T 2ehh_A 33 NGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA--GRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYN--- 107 (294)
T ss_dssp TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSS---
T ss_pred CCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC---
Confidence 368899998854 555788888889888887632 23555555433322 234555667789999988766543
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 108 -----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 136 (294)
T 2ehh_A 108 -----K-PTQRGLYEHFKTVAQEVDIP---I-IIYNIPS 136 (294)
T ss_dssp -----C-CCHHHHHHHHHHHHHHCCSC---E-EEEECHH
T ss_pred -----C-CCHHHHHHHHHHHHHhcCCC---E-EEEeCCc
Confidence 2 3667777777766665 44 3 4677775
No 249
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=50.78 E-value=23 Score=32.34 Aligned_cols=49 Identities=8% Similarity=0.050 Sum_probs=41.8
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcchHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSFGRYFL 381 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~G~~~~ 381 (391)
.+++.+++.+..|.+...+...|..|...|++..++ +.+.+|+.+..+.
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~ 89 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR 89 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTS
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHh
Confidence 468889999999998877889999999999999865 7999998776543
No 250
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=50.69 E-value=31 Score=27.72 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=36.4
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCeEEeCcc
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKNIKPTSF 376 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~~~lT~~ 376 (391)
.+..+.+.++++++...+.+.+..|.+.||+.-. ++.++|+..
T Consensus 30 ~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~ 74 (149)
T 1ylf_A 30 LCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKD 74 (149)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSC
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEeCCC
Confidence 4888899999999988889999999999999865 577888854
No 251
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=50.62 E-value=68 Score=30.01 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=37.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHH-HHHHHHhCC-CCC-----CcEEEEeeCCCCCCHHHHHHhHHCCCCEEEE
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYL-LKNIKKLLL-FKK-----NISITLEANPSTFEIEKFHSYSIIGINRLSI 133 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~l-l~~i~~~~~-~~~-----~~eit~e~~p~~l~~e~l~~l~~~Gv~risi 133 (391)
+++.|++.+...++++++.++++ +..+++.+. +.. ...+..-+. . +...++.+++.|++-+++
T Consensus 210 Gad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~--g-~~~~l~~l~~~g~d~i~~ 279 (368)
T 4exq_A 210 GAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTK--G-GGLWLEDLAATGVDAVGL 279 (368)
T ss_dssp TCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEET--T-CGGGHHHHHTSSCSEEEC
T ss_pred CCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC--C-cHHHHHHHHHhCCCEEee
Confidence 56777776666778898887665 223333221 111 123322222 2 246788899999998876
No 252
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=50.51 E-value=1.3e+02 Score=26.25 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe--c--CCCCCC-------HHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI--Y--ALPNQT-------LSE 184 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI--~--GlPgqt-------~e~ 184 (391)
++.++.++++|++.|.+......+. ...++.+..+.++++ +. +....- + .+-... .+.
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~~~~---------~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~~l~~~d~~~r~~~~~~ 89 (290)
T 2qul_A 20 PATAKRIAGLGFDLMEISLGEFHNL---------SDAKKRELKAVADDLGLT-VMCCIGLKSEYDFASPDKSVRDAGTEY 89 (290)
T ss_dssp HHHHHHHHHTTCSEEEEESTTGGGS---------CHHHHHHHHHHHHHHTCE-EEEEEEECGGGCTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecCCcccc---------chhhHHHHHHHHHHcCCc-eEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 5789999999999999986542211 124555666666776 54 433211 1 121112 367
Q ss_pred HHHHHHHHHhcCCCeEEE
Q psy2383 185 LMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~ 202 (391)
+.+.++.+.++|++.|.+
T Consensus 90 ~~~~i~~a~~lG~~~v~~ 107 (290)
T 2qul_A 90 VKRLLDDCHLLGAPVFAG 107 (290)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 788899999999999874
No 253
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=50.49 E-value=30 Score=27.19 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=31.4
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeC
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPT 374 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT 374 (391)
+...+.+.||++...+...+..|+..||++.. +....++
T Consensus 40 ser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~ 79 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIA 79 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEEe
Confidence 45678899999988899999999999999865 4445554
No 254
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=50.49 E-value=47 Score=25.58 Aligned_cols=36 Identities=8% Similarity=0.284 Sum_probs=31.8
Q ss_pred cCC--CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 332 KDG--FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 332 ~~g--~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
..+ +....+.+..+.+...+...|+.|++.|+|...
T Consensus 38 ~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 38 EPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp STTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 445 889999999999988899999999999999864
No 255
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=50.39 E-value=26 Score=27.93 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=35.1
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 344455556789999999999998888999999999999974
No 256
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=50.14 E-value=30 Score=32.63 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=48.0
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHH------HHHH
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELM------LDLN 190 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~------~~l~ 190 (391)
+.++.++++|++||...+++..++. ....+.+.+.++.|++. +. +-+|+ +++.+. +++.
T Consensus 21 ~yi~~a~~~Gf~~IFTSL~~~e~~~------~~~~~~~~~l~~~a~~~g~~-vi~DI-------sp~~l~~Lg~s~~dl~ 86 (372)
T 2p0o_A 21 IYIKKMKALGFDGIFTSLHIPEDDT------SLYRQRLTDLGAIAKAEKMK-IMVDI-------SGEALKRAGFSFDELE 86 (372)
T ss_dssp HHHHHHHHTTCCEEEEEECCC-----------CHHHHHHHHHHHHHHHTCE-EEEEE-------CHHHHHTTTCBTTBCH
T ss_pred HHHHHHHHCCCCEEEccCCccCCCh------HHHHHHHHHHHHHHHHCCCE-EEEEC-------CHHHHHHcCCCHHHHH
Confidence 5799999999999999999875432 22345677888888888 65 76776 223332 2566
Q ss_pred HHHhcCCCeEEE
Q psy2383 191 YAIQYSPPHLSL 202 (391)
Q Consensus 191 ~~~~l~~~~is~ 202 (391)
.+.++|++.|.+
T Consensus 87 ~~~~lGi~glRL 98 (372)
T 2p0o_A 87 PLIELGVTGLRM 98 (372)
T ss_dssp HHHHHTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 777778877654
No 257
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=50.09 E-value=78 Score=29.01 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=42.9
Q ss_pred CeeEEEEeC---CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 68 KIHTIFIGG---GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 68 ~~~~i~~gG---Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
.+-+++.=+ |.||. +++.++++++.|++..+. .+.+|.......-.++.++.+.+..-.-.|+.+=|.
T Consensus 47 aivHlHvRdp~dG~ps~-d~~~~~e~~~~IR~~~d~--iI~~TTgg~~~~~~eerla~~~~~~Pe~aSln~gs~ 117 (311)
T 3e02_A 47 AMLHLHARDPLNGRPSQ-DPDLFMRFLPQLKERTDA--ILNITTGGGLGMSLDERLAPARAARPEVASMNMGSL 117 (311)
T ss_dssp SEEEECEECTTTCCEEC-CHHHHTTTHHHHHHHCCC--EEEECSSCSTTCCHHHHHHHHHHHCCSEEEEECSCE
T ss_pred cEEEEeecCCCCCCcCC-CHHHHHHHHHHHHHhCCc--EEEECCCCCCCCCHHHHHHHHHhcCCCeeeecCCCc
Confidence 455666554 78886 888999999999987532 233333333332235677777776666666665444
No 258
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=50.09 E-value=25 Score=28.12 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 344455556789999999999998889999999999999985
No 259
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=50.07 E-value=29 Score=26.43 Aligned_cols=42 Identities=7% Similarity=-0.023 Sum_probs=35.1
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcch
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFG 377 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G 377 (391)
+...+.+.||++...+...+..|+..|+++.. +....+++..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~~V~~~~ 77 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLGMLVKAGA 77 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECTTH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEeCCc
Confidence 56678899999988889999999999999864 6777887654
No 260
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=49.92 E-value=29 Score=32.10 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=39.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcc
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSF 376 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~ 376 (391)
.+++.+++.+..|.+...+...|..|...|+++.+++++.+|+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~ 106 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEF 106 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeCCeEecCHH
Confidence 56888999999999877788999999999999999999999985
No 261
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=49.72 E-value=57 Score=29.52 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=64.0
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.++..|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 41 Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~---- 114 (297)
T 3flu_A 41 GTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA--KRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYN---- 114 (297)
T ss_dssp TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS----
T ss_pred CCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC--CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCC----
Confidence 68899998844 555788888889888877643 23455554433222 345566677889999998766554
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 115 ----~-~~~~~l~~~f~~va~a~~lP---i-ilYn~P~ 143 (297)
T 3flu_A 115 ----K-PSQEGIYQHFKTIAEATSIP---M-IIYNVPG 143 (297)
T ss_dssp ----C-CCHHHHHHHHHHHHHHCCSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhCCCC---E-EEEECCc
Confidence 2 3566777777766665 44 3 4677775
No 262
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=49.63 E-value=17 Score=33.60 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=50.2
Q ss_pred CCcEEEEeeCCCCCCHHHHHHh---HHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC
Q psy2383 102 KNISITLEANPSTFEIEKFHSY---SIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL 177 (391)
Q Consensus 102 ~~~eit~e~~p~~l~~e~l~~l---~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl 177 (391)
++..+++-++......+-++.+ .+.|++.+.+-. +. +..+.+.++++.+++. .. +.+.+++.-
T Consensus 72 ~~~~~~~L~r~~~~~~~dv~~~~~a~~~Gvd~~ri~~---~~---------~nle~~~~~v~~ak~~G~~-v~~~~~~~~ 138 (320)
T 3dxi_A 72 STKKIAIMLNEKNTTPEDLNHLLLPIIGLVDMIRIAI---DP---------QNIDRAIVLAKAIKTMGFE-VGFNVMYMS 138 (320)
T ss_dssp CCSEEEEEEEGGGCCGGGHHHHHGGGTTTCSEEEEEE---CG---------GGHHHHHHHHHHHHTTTCE-EEEEECCTT
T ss_pred cCCeEEEEecCCCCChhhHHHHHHhhhcCCCEEEEEe---cH---------HHHHHHHHHHHHHHHCCCE-EEEEEEeCC
Confidence 3567777653322211223222 447998877763 11 2377888899999998 65 777777654
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 178 PNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
|-.+.+.+...+.. ++.|++.|++-
T Consensus 139 ~~~~~~~~l~~~~~-~~~G~~~i~l~ 163 (320)
T 3dxi_A 139 KWAEMNGFLSKLKA-IDKIADLFCMV 163 (320)
T ss_dssp TGGGSTTSGGGGGG-GTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHH-hhCCCCEEEEC
Confidence 44333333333333 35577766544
No 263
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=49.52 E-value=1.4e+02 Score=26.58 Aligned_cols=115 Identities=7% Similarity=0.003 Sum_probs=71.1
Q ss_pred CCCHHHHHHhHHCCCCEEEEecCCCCHHHHH-HhCCCCC---HHHHHHHHHHHHhh-cccceEeEecCCCC------CCH
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQSFNNKYLN-ILGRTHD---SKQAKYAIEIAKQY-FNNFNLDLIYALPN------QTL 182 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~-~l~R~~~---~~~~~~~i~~~~~~-~~~v~~dlI~GlPg------qt~ 182 (391)
..+++.++.|+++|+|-|.+.+.- +.+.. ......+ .+.+.++|+.+++. +. +-+|+- ..|+ .+.
T Consensus 31 ~~~~~di~~~~~~G~n~vRi~i~w--~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~gi~-vild~h-~~~~~~g~~~~~~ 106 (305)
T 1h1n_A 31 WPDPNTIDTLISKGMNIFRVPFMM--ERLVPNSMTGSPDPNYLADLIATVNAITQKGAY-AVVDPH-NYGRYYNSIISSP 106 (305)
T ss_dssp CCCHHHHHHHHHTTCCEEEEEECH--HHHSCSSTTSCCCHHHHHHHHHHHHHHHHTTCE-EEEEEC-CTTEETTEECCCH
T ss_pred CCCHHHHHHHHHCCCCEEEecccH--HHcCCCCCCCCcCHHHHHHHHHHHHHHHHCCCE-EEEecc-ccccccCCcCCcH
Confidence 347999999999999976666521 00000 0011112 34577888889888 65 666653 2332 246
Q ss_pred HHHHHHHHHHHhc-C-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 183 SELMLDLNYAIQY-S-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 183 e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
+.+.+-.+.+.+. + -++| .|.+.=+|... +.+.....++.+.+.+++.|=
T Consensus 107 ~~~~~~~~~ia~~~~~~~~V-~~~l~NEP~~~----------~~~~w~~~~~~~~~~IR~~~~ 158 (305)
T 1h1n_A 107 SDFETFWKTVASQFASNPLV-IFDTDNEYHDM----------DQTLVLNLNQAAIDGIRSAGA 158 (305)
T ss_dssp HHHHHHHHHHHHTSTTCTTE-EEECCSCCCSS----------CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCeE-EEeccCCCCCC----------CHHHHHHHHHHHHHHHHhcCC
Confidence 7777777666643 2 2378 78777676432 345666778888888887665
No 264
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=49.51 E-value=27 Score=29.99 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=40.0
Q ss_pred CCChhHHHHHhCCCH-HHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 334 GFSPNLFFERTGINI-KIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 334 g~~~~~~~~~~~~~~-~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
.+..+.++...|.+. +.+...+..|.+.|++..++++|.+.+.-.+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L 215 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYL 215 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHH
Confidence 567788999999998 7999999999999999999999999865443
No 265
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=49.38 E-value=19 Score=39.58 Aligned_cols=99 Identities=6% Similarity=-0.056 Sum_probs=65.5
Q ss_pred CCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCC----CC---CCHHHHHH
Q psy2383 115 FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYAL----PN---QTLSELML 187 (391)
Q Consensus 115 l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~Gl----Pg---qt~e~~~~ 187 (391)
+..+.++...++|++.+.+- -|.+ +.+.+..+++.+++....+..++.+.. |. -+++-+.+
T Consensus 646 ~~~~~i~~a~~~g~d~irif-~sl~-----------~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~ 713 (1165)
T 2qf7_A 646 VVKYFVRQAAKGGIDLFRVF-DCLN-----------WVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTN 713 (1165)
T ss_dssp HHHHHHHHHHHHTCCEEEEE-CTTC-----------CGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHH
T ss_pred hHHHHHHHHHhcCcCEEEEE-eeHH-----------HHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHH
Confidence 34577888889999987773 2332 355777888888888223666665542 33 48888999
Q ss_pred HHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 188 DLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 188 ~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
.++.+.+.|++.|.+-- |. ....+....++....++.+
T Consensus 714 ~~~~~~~~Ga~~i~l~D------T~-------G~~~P~~~~~lv~~l~~~~ 751 (1165)
T 2qf7_A 714 LAVELEKAGAHIIAVKD------MA-------GLLKPAAAKVLFKALREAT 751 (1165)
T ss_dssp HHHHHHHTTCSEEEEEE------TT-------CCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEeC------cc-------CCcCHHHHHHHHHHHHHhc
Confidence 99999999999776543 21 1233455566665554443
No 266
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=49.18 E-value=41 Score=29.97 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=63.5
Q ss_pred CCCHHHHHHhH-HCCCCE--EEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC-CCHHHHHHH
Q psy2383 114 TFEIEKFHSYS-IIGINR--LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN-QTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l~~l~-~~Gv~r--isiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-qt~e~~~~~ 188 (391)
.++++.++.|+ ++|+|- +.++.++..+.. .+.....+.+.++++.|.+. +. |-+|+ .+.|+ ...+.+.+-
T Consensus 38 ~~~~~d~~~l~~~~G~N~vR~~~~~~~~~~~~---~~~~~~~~~ld~~v~~a~~~Gi~-vild~-h~~~~~~~~~~~~~~ 112 (291)
T 1egz_A 38 FYTADTVASLKKDWKSSIVRAAMGVQESGGYL---QDPAGNKAKVERVVDAAIANDMY-AIIGW-HSHSAENNRSEAIRF 112 (291)
T ss_dssp GCSHHHHHHHHHTTCCCEEEEEEECSSTTSTT---TCHHHHHHHHHHHHHHHHHTTCE-EEEEE-ECSCGGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCEEEEeccccccCCCc---CCHHHHHHHHHHHHHHHHHCCCE-EEEEc-CCCCcchhHHHHHHH
Confidence 46889999999 899984 555543211000 00001134566788888888 65 66666 33443 345666666
Q ss_pred HHHHHh-cC-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 189 LNYAIQ-YS-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 189 l~~~~~-l~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
.+.+.+ ++ -++|- |.+.=+|...- .. +...+.+..+.+..++.+=.
T Consensus 113 ~~~ia~r~~~~p~V~-~el~NEP~~~~-------~~--~~~~~~~~~~~~~IR~~d~~ 160 (291)
T 1egz_A 113 FQEMARKYGNKPNVI-YEIYNEPLQVS-------WS--NTIKPYAEAVISAIRAIDPD 160 (291)
T ss_dssp HHHHHHHHTTSTTEE-EECCSCCCSCC-------TT--TTHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhCCCCcEE-EEecCCCCCCc-------hH--HHHHHHHHHHHHHHHhcCCC
Confidence 655543 22 23464 87776775421 01 12344556666666665543
No 267
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=48.84 E-value=81 Score=29.21 Aligned_cols=103 Identities=6% Similarity=0.021 Sum_probs=56.2
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHH--------HHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYL--------LKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~l--------l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
.+++.|.+.+...++++++.++++ ++.+++. +..+..=+. ++ ...++.|.+.|++-+++.- +.
T Consensus 205 aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~-----g~~~i~~~~-G~--~~~l~~l~~~g~d~~~~d~-~~ 275 (359)
T 2inf_A 205 AGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE-----NVPLIMFGV-GA--SHLAGDWHDLPLDVVGLDW-RL 275 (359)
T ss_dssp TTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGG-----CSCEEEECT-TC--GGGHHHHHTSSCSEEECCT-TS
T ss_pred hCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHc-----CCcEEEEcC-Cc--HHHHHHHHHhCCCEEEeCC-CC
Confidence 357788888766678888765443 4444432 122332222 22 4588889999999877631 22
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHh-h-cccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 139 NNKYLNILGRTHDSKQAKYAIEIAKQ-Y-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 139 ~~~~l~~l~R~~~~~~~~~~i~~~~~-~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
|.+.++..+ .+ . ..++...++ ..|.+++++.++.+++.+.
T Consensus 276 d~~~~~~~g---------------~~~~l~Gnldp~~l----~~t~e~I~~~v~~~l~~~~ 317 (359)
T 2inf_A 276 GIDEARSKG---------------ITKTVQGNLDPSIL----LAPWEVIEQKTKEILDQGM 317 (359)
T ss_dssp CHHHHHHTT---------------CCSEEECCBCGGGG----GSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHcC---------------CCEEEEecCChHHh----cCCHHHHHHHHHHHHHhCC
Confidence 333322221 11 1 223333222 4577888888877776544
No 268
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=48.83 E-value=35 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=34.8
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 334455556689999999999998888999999999999975
No 269
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=48.76 E-value=24 Score=31.11 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=37.3
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~ 386 (391)
+...-++..+++-..+. ..|+.-...-|+.+++.++.||+.|..++..+..
T Consensus 19 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~ 72 (306)
T 3hhg_A 19 SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQR 72 (306)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEeecCCCeeECHhHHHHHHHHHH
Confidence 45556667777655554 4455555578999999999999999999886543
No 270
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=48.63 E-value=37 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=34.8
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcch
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFG 377 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G 377 (391)
+...+.+.||++...+...+..|+..|+++.. +....+++..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~ 72 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVSAQA 72 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEEEecCc
Confidence 56678899999988889999999999999865 5577777654
No 271
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=48.52 E-value=1.1e+02 Score=26.82 Aligned_cols=105 Identities=7% Similarity=0.013 Sum_probs=61.2
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC-----------CCHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN-----------QTLSE 184 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-----------qt~e~ 184 (391)
++.++.++++|++.|.+....+ .+++.+..+.++++ +. +.. +-.+.++ ++.+.
T Consensus 41 ~~~l~~~~~~G~~~vEl~~~~~-------------~~~~~~~~~~l~~~gl~-v~~-~~~~~~~~l~~~d~~~r~~~~~~ 105 (287)
T 3kws_A 41 NEKLDFMEKLGVVGFEPGGGGL-------------AGRVNEIKQALNGRNIK-VSA-ICAGFKGFILSTDPAIRKECMDT 105 (287)
T ss_dssp HHHHHHHHHTTCCEEECBSTTC-------------GGGHHHHHHHHTTSSCE-ECE-EECCCCSCTTBSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCch-------------HHHHHHHHHHHHHcCCe-EEE-EecCCCCcCCCCCHHHHHHHHHH
Confidence 6789999999999999987642 12344444555555 44 221 1122222 13467
Q ss_pred HHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCc
Q psy2383 185 LMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSN----DENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~----~~~~~~~~~~~~~L~~~Gy~ 244 (391)
+.+.++.+.++|++.|.+.+ |..-... ..|+. +...+.+..+.+...+.|..
T Consensus 106 ~~~~i~~a~~lGa~~v~~~~-----g~~~~~~---~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~ 161 (287)
T 3kws_A 106 MKEIIAAAGELGSTGVIIVP-----AFNGQVP---ALPHTMETRDFLCEQFNEMGTFAAQHGTS 161 (287)
T ss_dssp HHHHHHHHHHTTCSEEEECS-----CCTTCCS---BCCSSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCEEEEec-----CcCCcCC---CCCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 78889999999999987753 2111100 01122 23345566666777777864
No 272
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.45 E-value=40 Score=23.64 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=30.3
Q ss_pred CCCChhHHHHHh-----CCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 333 DGFSPNLFFERT-----GINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 333 ~g~~~~~~~~~~-----~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
..++.+++.+.+ +++...+...|+.|++.|+|...
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 468888998888 78888899999999999999863
No 273
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=48.28 E-value=1.5e+02 Score=27.36 Aligned_cols=81 Identities=11% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCC-CC-CHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPS-TF-EIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~-~l-~~e~l~~l~~ 125 (391)
.|+..+.+++... ++..|++.| |-..+.|..+.++++.+++.++ ++..+.+=++-+ .+ ....+..+ +
T Consensus 149 e~~~~ia~~~~~~-------Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~--~~~pi~~H~Hn~~G~avAn~laA~-~ 217 (345)
T 1nvm_A 149 EKLAEQGKLMESY-------GATCIYMAD-SGGAMSMNDIRDRMRAFKAVLK--PETQVGMHAHHNLSLGVANSIVAV-E 217 (345)
T ss_dssp HHHHHHHHHHHHH-------TCSEEEEEC-TTCCCCHHHHHHHHHHHHHHSC--TTSEEEEECBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHC-------CCCEEEECC-CcCccCHHHHHHHHHHHHHhcC--CCceEEEEECCCccHHHHHHHHHH-H
Confidence 4555555555433 356788776 5556678888888888888763 245666655321 12 33344444 5
Q ss_pred CCCCEEEEecCCCC
Q psy2383 126 IGINRLSIGIQSFN 139 (391)
Q Consensus 126 ~Gv~risiGvqS~~ 139 (391)
+|+++|.-.+-.+-
T Consensus 218 aGa~~vd~tv~GlG 231 (345)
T 1nvm_A 218 EGCDRVDASLAGMG 231 (345)
T ss_dssp TTCCEEEEBGGGCS
T ss_pred cCCCEEEecchhcc
Confidence 78888877665544
No 274
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=48.24 E-value=31 Score=32.59 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC-----CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHH
Q psy2383 85 TGLDYLLKNIKKLLLFKKNISITLEANPSTF-----EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAI 159 (391)
Q Consensus 85 ~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l-----~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i 159 (391)
+.+.++++..++. +.++.+.++|..+ +.+.++.+++.|++.|-+-- +.+.+++.
T Consensus 50 ~~~~~l~~~a~~~-----g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lGi~glRLD~-------------Gf~~~eia--- 108 (372)
T 2p0o_A 50 QRLTDLGAIAKAE-----KMKIMVDISGEALKRAGFSFDELEPLIELGVTGLRMDY-------------GITIEQMA--- 108 (372)
T ss_dssp HHHHHHHHHHHHH-----TCEEEEEECHHHHHTTTCBTTBCHHHHHHTCCEEEECS-------------SCCHHHHH---
T ss_pred HHHHHHHHHHHHC-----CCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCEEEEcC-------------CCCHHHHH---
Confidence 4567777777664 5689999998765 44788889999998666532 22322222
Q ss_pred HHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCC---eEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHH
Q psy2383 160 EIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP---HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKIT 235 (391)
Q Consensus 160 ~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~---~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~ 235 (391)
+..++. +. +|+.-| |. +.++.+.+.+++ -+.++.+.|.|.|-+. .+.|...-
T Consensus 109 ~ls~nlkIe-LNASti------~~----~~l~~l~~~~~n~~~l~a~HNFYPr~~TGLs-------------~~~f~~~n 164 (372)
T 2p0o_A 109 HASHKIDIG-LNASTI------TL----EEVAELKAHQADFSRLEAWHNYYPRPETGIG-------------TTFFNEKN 164 (372)
T ss_dssp HHHTTSEEE-EETTTC------CH----HHHHHHHHTTCCGGGEEEECCCCCSTTCSBC-------------HHHHHHHH
T ss_pred HHhcCCEEE-EECccC------CH----HHHHHHHHcCCChHHeEEeeccCCCCCCCCC-------------HHHHHHHH
Confidence 122222 22 222221 33 345666777765 4588999999988653 24566677
Q ss_pred HHHHHCCCce
Q psy2383 236 SLLKNNYYKN 245 (391)
Q Consensus 236 ~~L~~~Gy~~ 245 (391)
+.|++.|..-
T Consensus 165 ~~~k~~Gi~t 174 (372)
T 2p0o_A 165 RWLKELGLQV 174 (372)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHHCCCcE
Confidence 8889999764
No 275
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=48.20 E-value=26 Score=32.47 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=67.1
Q ss_pred CCCHHHHHHhHHCCCCEEEEec--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhh-cccceEeEecCCCC-------C
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGI--QSFNNKYLNILGRTHD---SKQAKYAIEIAKQY-FNNFNLDLIYALPN-------Q 180 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGv--qS~~~~~l~~l~R~~~---~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-------q 180 (391)
.++++.++.+++.|+|.|-|.| +.+-+.. .+-..+ .+.+.++|+.+.+. +. +-+|+ ...|+ +
T Consensus 42 ~~t~~di~~i~~~G~n~vRipi~w~~~~~~~---~~~~~~~~~l~~l~~~v~~a~~~Gi~-vildl-H~~~~w~~~~~~~ 116 (345)
T 3ndz_A 42 MTTHAMINKIKEAGFNTLRLPVTWDGHMGAA---PEYTIDQTWMKRVEEIANYAFDNDMY-VIINL-HHENEWLKPFYAN 116 (345)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCCCTTSBCCT---TTCCBCHHHHHHHHHHHHHHHTTTCE-EEECC-CSCTTTCCCSTTT
T ss_pred CCcHHHHHHHHHCCCCEEEEeeehHHhCCCC---CCCccCHHHHHHHHHHHHHHHHCCCE-EEEec-CCccccccccccc
Confidence 4689999999999999666655 3221110 011112 35677888888888 64 65665 23342 1
Q ss_pred ---CHHHHHHHHHHHHh-cC--CCeEEEecccccCCCcc--cCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 181 ---TLSELMLDLNYAIQ-YS--PPHLSLYSLTIEPNTYF--FKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 181 ---t~e~~~~~l~~~~~-l~--~~~is~y~l~~~pgT~l--~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
+.+.+.+-.+.+.+ ++ ++++ .|.+.=+|..+- .........+.+...+.++.+.+..++.|-
T Consensus 117 ~~~~~~~~~~~w~~iA~~y~~~~~~v-~~el~NEP~~~~~~~~W~~~~~~~~~~l~~~~~~~i~aIR~~g~ 186 (345)
T 3ndz_A 117 EAQVKAQLTKVWTQIANNFKKYGDHL-IFETMNEPRPVGASLQWTGGSYENREVVNRYNLTAVNAIRATGG 186 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCTTE-EEESCSCCCCCSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCce-EEEeccCCCCCCcccccCCCCchhHHHHHHHHHHHHHHHHhcCC
Confidence 23334333344443 32 3444 777776775321 111110000123345677888888988864
No 276
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=48.10 E-value=59 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=37.5
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFLN 382 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~ 382 (391)
++-..+.+.||++-..+...|..|+..|||+.. +....+++...--..
T Consensus 36 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~ 84 (218)
T 3sxy_A 36 LNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIR 84 (218)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHHHH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHHHH
Confidence 666778899999988899999999999999865 566777765443333
No 277
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=47.91 E-value=96 Score=28.29 Aligned_cols=97 Identities=8% Similarity=0.107 Sum_probs=64.0
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.++..|.| ...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 57 Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~--grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~---- 130 (314)
T 3qze_A 57 GTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK--GRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYN---- 130 (314)
T ss_dssp TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS----
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCC----
Confidence 58889998844 555788888889888877643 23455555433322 345566677889999998766554
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 131 ----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 159 (314)
T 3qze_A 131 ----K-PTQEGMYQHFRHIAEAVAIP---Q-ILYNVPG 159 (314)
T ss_dssp ----C-CCHHHHHHHHHHHHHHSCSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhcCCC---E-EEEeCcc
Confidence 2 3566777777776665 44 3 4677774
No 278
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=47.66 E-value=26 Score=27.94 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|....++...++.+..|.+...+...++.|++.|++..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 344455556789999999999998888999999999999975
No 279
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=47.55 E-value=37 Score=28.59 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=36.2
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCe-EEeCcc
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKN-IKPTSF 376 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~-~~lT~~ 376 (391)
+..+.++...|.+.+.+...+..|.+.|++..++++ +.+.+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~~i~d~ 206 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNL 206 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCceEEEcCH
Confidence 677889999999998899999999999999999888 666443
No 280
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.35 E-value=40 Score=28.30 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=38.9
Q ss_pred cCHhh-HHHHHHHHhhhhcC-CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC
Q psy2383 315 IEKKC-LIFEFMLNALRLKD-GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK 369 (391)
Q Consensus 315 l~~~~-~~~e~~~~~lr~~~-g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~ 369 (391)
|+..+ ...+++...++... .....++++.+|.+...+...|+.|++.|++..+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC--
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCC
Confidence 45444 34555554444332 478899999999987678889999999999987654
No 281
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=47.35 E-value=31 Score=31.51 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=42.7
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRYFL 381 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~ 381 (391)
.+++.+++.+..|.+...+...|..|...|++..+ ++.+.+|+.+..+.
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR 86 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHh
Confidence 46889999999999987788999999999999986 68999999887763
No 282
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=47.33 E-value=94 Score=28.64 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHH
Q psy2383 50 LEALLIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSI 125 (391)
Q Consensus 50 ~~~l~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~ 125 (391)
.+++.+-++.+.+. +++.|+..| |....|+.++-.++++.+.+. ....+.+-+-+...+. +-+..+..++
T Consensus 54 ~~~l~~lv~~li~~----Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~--~~grvpViaGvg~~st~eai~la~~A~~ 127 (332)
T 2r8w_A 54 IEAFSALIARLDAA----EVDSVGILGSTGIYMYLTREERRRAIEAAATI--LRGRRTLMAGIGALRTDEAVALAKDAEA 127 (332)
T ss_dssp HHHHHHHHHHHHHH----TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH--HTTSSEEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCEEEECccccChhhCCHHHHHHHHHHHHHH--hCCCCcEEEecCCCCHHHHHHHHHHHHh
Q ss_pred CCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 126 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 126 ~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
+|++.+.+-.-.+.. .+.+.+.+-.+.+.++.+ +-+ ++|..|+
T Consensus 128 ~Gadavlv~~P~Y~~---------~s~~~l~~~f~~VA~a~~-lPi-ilYn~P~ 170 (332)
T 2r8w_A 128 AGADALLLAPVSYTP---------LTQEEAYHHFAAVAGATA-LPL-AIYNNPT 170 (332)
T ss_dssp HTCSEEEECCCCSSC---------CCHHHHHHHHHHHHHHCS-SCE-EEECCHH
T ss_pred cCCCEEEECCCCCCC---------CCHHHHHHHHHHHHHhcC-CCE-EEEeCcc
No 283
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=47.12 E-value=82 Score=27.27 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=36.8
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~~ 379 (391)
++-..+.+.||++-..+...|..|+..|||+.. +....+++...-
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~ 97 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAE 97 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCHH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEEeCCCHH
Confidence 667788999999988899999999999999876 456777765543
No 284
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=46.71 E-value=41 Score=27.69 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 344455556789999999999998889999999999999964
No 285
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=46.50 E-value=1e+02 Score=27.76 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcc
Q psy2383 88 DYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFN 167 (391)
Q Consensus 88 ~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~ 167 (391)
..-++.+++.++ +...+-+|++ |.+.++...++|++.|-++- .+.+++.++++.++..++
T Consensus 180 ~~av~~ar~~~~--~~~~I~VEV~----tleea~eA~~aGaD~I~LDn--------------~~~e~l~~av~~l~~~~~ 239 (285)
T 1o4u_A 180 ERAVQEVRKIIP--FTTKIEVEVE----NLEDALRAVEAGADIVMLDN--------------LSPEEVKDISRRIKDINP 239 (285)
T ss_dssp HHHHHHHHTTSC--TTSCEEEEES----SHHHHHHHHHTTCSEEEEES--------------CCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC--CCceEEEEeC----CHHHHHHHHHcCCCEEEECC--------------CCHHHHHHHHHHhhccCC
Confidence 445556666654 2244555543 35666666779999988875 466778888888776433
Q ss_pred cceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 168 NFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 168 ~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
.+-+-..=|+--+|. ..+.+.|+|.|++-.++
T Consensus 240 ~v~ieASGGIt~eni-------~~~a~tGVD~IsvGslt 271 (285)
T 1o4u_A 240 NVIVEVSGGITEENV-------SLYDFETVDVISSSRLT 271 (285)
T ss_dssp TSEEEEEECCCTTTG-------GGGCCTTCCEEEEGGGT
T ss_pred CceEEEECCCCHHHH-------HHHHHcCCCEEEEeHHH
Confidence 355555666644444 44456799999987765
No 286
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=46.34 E-value=78 Score=26.91 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=36.0
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcchH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFGR 378 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G~ 378 (391)
-+.-..+.+.||++-..++..|..|...|||+.. +...++++-..
T Consensus 39 ~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~ 84 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSL 84 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCH
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCH
Confidence 3666778999999988899999999999999875 45666665443
No 287
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=46.32 E-value=23 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
.++...+.+.+|++...+...|..|.+.|++...
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5888999999999988899999999999999865
No 288
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*
Probab=45.87 E-value=48 Score=29.85 Aligned_cols=112 Identities=10% Similarity=0.117 Sum_probs=62.4
Q ss_pred CCCHHHHHHhHHCCCCEEEEecC--CCCHHHHHHhCCCCC-----HHHHHHHHHHHHhh-cccceEeEecCCCC------
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQ--SFNNKYLNILGRTHD-----SKQAKYAIEIAKQY-FNNFNLDLIYALPN------ 179 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvq--S~~~~~l~~l~R~~~-----~~~~~~~i~~~~~~-~~~v~~dlI~GlPg------ 179 (391)
.++++.++.|+++|+|.|-+.+. .+.+. .-..+ .+.+.++++.|++. +. +-+|+- +.|+
T Consensus 33 ~~~~~d~~~l~~~G~n~vR~~i~w~~~~~~-----~~~~~~~~~~~~~~d~~v~~a~~~Gi~-vild~h-~~~~~~~~~~ 105 (317)
T 3aof_A 33 VIKDEFFDIIKEAGFSHVRIPIRWSTHAYA-----FPPYKIMDRFFKRVDEVINGALKRGLA-VVINIH-HYEELMNDPE 105 (317)
T ss_dssp CCCTHHHHHHHHHTCSEEEECCCGGGGBCS-----STTCCBCHHHHHHHHHHHHHHHHTTCE-EEEECC-CCHHHHHCHH
T ss_pred CCCHHHHHHHHHcCCCEEEEeccHHHhcCC-----CCCCcCCHHHHHHHHHHHHHHHHCCCE-EEEEec-CCccccCCcH
Confidence 35788999999999997777642 22110 00111 45577788888888 65 555552 2222
Q ss_pred CCHHHHHHHHHHHHh-cC--CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q psy2383 180 QTLSELMLDLNYAIQ-YS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNY 242 (391)
Q Consensus 180 qt~e~~~~~l~~~~~-l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~G 242 (391)
+..+.+.+-++.+.+ ++ +. +-.|.+.=+|... .+.+...+.+..+.+..++.+
T Consensus 106 ~~~~~~~~~~~~ia~~~~~~~~-v~~~el~NEP~~~---------~~~~~~~~~~~~~~~~iR~~~ 161 (317)
T 3aof_A 106 EHKERFLALWKQIADRYKDYPE-TLFFEILNAPHGN---------LTPEKWNELLEEALKVIRSID 161 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT-TEEEECCSSCCTT---------SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-eEEEEeccCCCCC---------CCHHHHHHHHHHHHHHHHhhC
Confidence 123444444444443 32 33 3366666566432 234555566666777776644
No 289
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=45.83 E-value=99 Score=25.86 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCC-CHHH-HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTF-EIEK-FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY- 165 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l-~~e~-l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~- 165 (391)
++++.+++.+. +..+- +++... ..+. ++.+.++|++.|.++..+. .+++.+.++.++++
T Consensus 42 ~~i~~ir~~~~---~~~i~--~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~-------------~~~~~~~~~~~~~~g 103 (211)
T 3f4w_A 42 NAIKAIKEKYP---HKEVL--ADAKIMDGGHFESQLLFDAGADYVTVLGVTD-------------VLTIQSCIRAAKEAG 103 (211)
T ss_dssp HHHHHHHHHCT---TSEEE--EEEEECSCHHHHHHHHHHTTCSEEEEETTSC-------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC---CCEEE--EEEEeccchHHHHHHHHhcCCCEEEEeCCCC-------------hhHHHHHHHHHHHcC
Confidence 55666776532 23332 222111 1334 8999999999999987652 23456777777776
Q ss_pred cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 166 FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 166 ~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+ +-++++ + | +|. .+.++.+.+.+++.|.+.
T Consensus 104 ~~-~~v~~~-~-~-~t~---~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 104 KQ-VVVDMI-C-V-DDL---PARVRLLEEAGADMLAVH 134 (211)
T ss_dssp CE-EEEECT-T-C-SSH---HHHHHHHHHHTCCEEEEE
T ss_pred Ce-EEEEec-C-C-CCH---HHHHHHHHHcCCCEEEEc
Confidence 44 333322 2 3 232 345677888899987553
No 290
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=45.77 E-value=79 Score=25.07 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCcc
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTSF 376 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~ 376 (391)
.+..+.+.++.+++...+.+.+..|.+.|+|.-. ++.++|+..
T Consensus 28 ~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 73 (143)
T 3t8r_A 28 CISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVP 73 (143)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSC
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCC
Confidence 3788899999999988889999999999999865 367999853
No 291
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=45.60 E-value=93 Score=28.10 Aligned_cols=85 Identities=9% Similarity=-0.010 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHH--HHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL--NILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLS 183 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l--~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e 183 (391)
|+..|.-..+.+.++|++-|-+| +--+ ..+|.+ .|.+++...++.+.+. .+ +.+|+=+|+ | +.+
T Consensus 26 ~~a~D~~sA~i~e~aGf~ai~vs-----~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~P-viaD~d~Gy-g-~~~ 97 (287)
T 3b8i_A 26 ASVFDPMSARIAADLGFECGILG-----GSVASLQVLAAPDFALITLSEFVEQATRIGRVARLP-VIADADHGY-G-NAL 97 (287)
T ss_dssp EECCSHHHHHHHHHTTCSCEEEC-----HHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSC-EEEECTTCS-S-SHH
T ss_pred ecCCCHHHHHHHHHcCCCEEEeC-----cHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEEECCCCC-C-CHH
Confidence 44567888888899999988876 2212 235654 4889999999888887 77 999999996 6 999
Q ss_pred HHHHHHHHHHhcCCCeEEEec
Q psy2383 184 ELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 184 ~~~~~l~~~~~l~~~~is~y~ 204 (391)
+..+++..+.+.|+.-|.+=.
T Consensus 98 ~~~~~v~~l~~aGa~gv~iED 118 (287)
T 3b8i_A 98 NVMRTVVELERAGIAALTIED 118 (287)
T ss_dssp HHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHhCCeEEEEcC
Confidence 999999999999998886543
No 292
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=45.51 E-value=48 Score=30.05 Aligned_cols=86 Identities=2% Similarity=-0.157 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
|+..|.-..+.+.++|++-|-+|=-| +=..+|.+ .|.+++...++.+.+. .+ +.+|+=+|+ | +.++.
T Consensus 20 ~~a~D~~sA~~~~~aG~~ai~vs~~~----~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~P-viaD~d~Gy-g-~~~~~ 92 (290)
T 2hjp_A 20 MAAHNPLVAKLAEQAGFGGIWGSGFE----LSASYAVPDANILSMSTHLEMMRAIASTVSIP-LIADIDTGF-G-NAVNV 92 (290)
T ss_dssp EECSSHHHHHHHHHHTCSEEEECHHH----HHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSC-EEEECTTTT-S-SHHHH
T ss_pred ecCCCHHHHHHHHHcCCCEEEEChHH----HHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEEECCCCC-C-CHHHH
Confidence 34567778888889999999887111 11115544 4889999999888887 77 999999996 6 99999
Q ss_pred HHHHHHHHhcCCCeEEEec
Q psy2383 186 MLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~ 204 (391)
.+++..+.+.|+.-|.+=.
T Consensus 93 ~~~v~~l~~aGa~gv~iED 111 (290)
T 2hjp_A 93 HYVVPQYEAAGASAIVMED 111 (290)
T ss_dssp HHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhCCeEEEEcC
Confidence 9999999999998886544
No 293
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=45.23 E-value=56 Score=29.74 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=65.1
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.|++.|.| ...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 49 Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~---- 122 (304)
T 3l21_A 49 GCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG--DRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYS---- 122 (304)
T ss_dssp TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS----
T ss_pred CCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----
Confidence 58889998844 555788888889988877643 34566665533332 344556677789999998766543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ ++ + ++|..|+
T Consensus 123 ----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 151 (304)
T 3l21_A 123 ----K-PPQRGLQAHFTAVADATELP---M-LLYDIPG 151 (304)
T ss_dssp ----C-CCHHHHHHHHHHHHTSCSSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhcCCC---E-EEEeCcc
Confidence 2 2667777777777766 44 3 4677775
No 294
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=45.23 E-value=18 Score=28.39 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.9
Q ss_pred hhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 328 ALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 328 ~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
.|.....+...++.+.+|.+...+...++.|++.|++..
T Consensus 12 ~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 12 ILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 444455688999999999998888999999999999964
No 295
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.15 E-value=1.1e+02 Score=27.50 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHH
Q psy2383 50 LEALLIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSI 125 (391)
Q Consensus 50 ~~~l~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~ 125 (391)
.+++.+-++...+. +++.++..| |....|+.++-.++++.+.+. ......+-+-+...+. +-+..+..++
T Consensus 21 ~~~l~~lv~~li~~----Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~--~~gr~pviaGvg~~~t~~ai~la~~a~~ 94 (291)
T 3tak_A 21 WKSLEKLVEWHIEQ----GTNSIVAVGTTGEASTLSMEEHTQVIKEIIRV--ANKRIPIIAGTGANSTREAIELTKAAKD 94 (291)
T ss_dssp HHHHHHHHHHHHHH----TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH--HTTSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCEEEECccccccccCCHHHHHHHHHHHHHH--hCCCCeEEEeCCCCCHHHHHHHHHHHHh
Q ss_pred CCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 126 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 126 ~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+|++.+.+-.-.+. +.+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 95 ~Gadavlv~~P~y~---------~~~~~~l~~~f~~ia~a~~lP---i-ilYn~P~ 137 (291)
T 3tak_A 95 LGADAALLVTPYYN---------KPTQEGLYQHYKAIAEAVELP---L-ILYNVPG 137 (291)
T ss_dssp HTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHCCSC---E-EEEECHH
T ss_pred cCCCEEEEcCCCCC---------CCCHHHHHHHHHHHHHhcCCC---E-EEEeccc
No 296
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=45.11 E-value=1.1e+02 Score=28.55 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCC--CCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANP--STFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p--~~l~~e~l~~l~ 124 (391)
..|+-.+.+.+... +++.|.+.+ |-..+.|..+.+++..+++.++-.+...+.+=++- +.-....+..+
T Consensus 156 ~~~~~~~~~~~~~~-------Ga~~i~l~D-T~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv- 226 (370)
T 3rmj_A 156 IDFLAEICGAVIEA-------GATTINIPD-TVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAAL- 226 (370)
T ss_dssp HHHHHHHHHHHHHH-------TCCEEEEEC-SSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHc-------CCCEEEecC-ccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHH-
Confidence 35666666665433 367888877 77788899999999999988652222456655532 22244555555
Q ss_pred HCCCCEEEEecCCCC
Q psy2383 125 IIGINRLSIGIQSFN 139 (391)
Q Consensus 125 ~~Gv~risiGvqS~~ 139 (391)
++|+++|.-.+-.+-
T Consensus 227 ~aGa~~vd~tv~GlG 241 (370)
T 3rmj_A 227 KGGARQVECTVNGLG 241 (370)
T ss_dssp HTTCCEEEEBGGGCS
T ss_pred HhCCCEEEEeccccC
Confidence 589999988775544
No 297
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=44.74 E-value=51 Score=29.79 Aligned_cols=97 Identities=13% Similarity=0.284 Sum_probs=63.0
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.+++.|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+..
T Consensus 36 Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~--- 110 (292)
T 3daq_A 36 NAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD--KRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNK--- 110 (292)
T ss_dssp TCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSC---
T ss_pred CCCEEEECccccccccCCHHHHHHHHHHHHHHhC--CCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCC---
Confidence 68999998844 555688888888888877642 33455554432222 3345556777899999987665442
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
.+.+.+.+-.+.+.++ ++ + ++|..|+
T Consensus 111 ------~~~~~l~~~f~~ia~a~~lP---i-ilYn~P~ 138 (292)
T 3daq_A 111 ------TNQRGLVKHFEAIADAVKLP---V-VLYNVPS 138 (292)
T ss_dssp ------CCHHHHHHHHHHHHHHHCSC---E-EEEECHH
T ss_pred ------CCHHHHHHHHHHHHHhCCCC---E-EEEeccc
Confidence 2566677777666665 44 3 4677774
No 298
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=44.69 E-value=1.8e+02 Score=26.30 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=46.5
Q ss_pred CCCHHHHH----HhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHH
Q psy2383 114 TFEIEKFH----SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDL 189 (391)
Q Consensus 114 ~l~~e~l~----~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l 189 (391)
.+|.+.++ .+.+.|++.|.+.=-|+--.. .|.++-.+.++.+.+... -.+-+|.|.-+.+.++..+-.
T Consensus 31 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-------Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la 102 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPF-------LTSSERLEVVSRVRQAMP-KNRLLLAGSGCESTQATVEMT 102 (307)
T ss_dssp CBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGG-------SCHHHHHHHHHHHHHTSC-TTSEEEEECCCSSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccchhh-------CCHHHHHHHHHHHHHHcC-CCCcEEEecCCCCHHHHHHHH
Confidence 35554444 344467777766433322111 255566666666666521 123456777666777777777
Q ss_pred HHHHhcCCCeEEEe
Q psy2383 190 NYAIQYSPPHLSLY 203 (391)
Q Consensus 190 ~~~~~l~~~~is~y 203 (391)
+.+.++|+|.+.+-
T Consensus 103 ~~A~~~Gadavlv~ 116 (307)
T 3s5o_A 103 VSMAQVGADAAMVV 116 (307)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEEc
Confidence 77777777776553
No 299
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=44.61 E-value=1.2e+02 Score=24.67 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=36.4
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc---CCeEEeCc
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN---NKNIKPTS 375 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~---~~~~~lT~ 375 (391)
.+..+.+++..+++...+.+.+..|.+.|+|.-. ++.++|+.
T Consensus 44 ~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 44 PISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecC
Confidence 4889999999999988889999999999999865 46799884
No 300
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=44.55 E-value=58 Score=29.20 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=56.9
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCH---------HHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHH--H
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNN---------KYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLS--E 184 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~---------~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e--~ 184 (391)
+.+.++.|.++|++-|.+|+--.|| ...+.+..+.+.+++.+.++.+++...++-+-+| +.-+ ... .
T Consensus 36 ~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm-~Y~n-~v~~~g 113 (271)
T 3nav_A 36 SLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLL-MYAN-LVYARG 113 (271)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-ECHH-HHHHTC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE-ecCc-HHHHHh
Confidence 5677888888999999999765443 3345677788999999999999875212444444 2100 011 1
Q ss_pred HHHHHHHHHhcCCCeEEE
Q psy2383 185 LMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~ 202 (391)
+.+-++.+.+.|++.+-+
T Consensus 114 ~~~f~~~~~~aGvdGvIi 131 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLI 131 (271)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 355678888899998755
No 301
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=44.44 E-value=66 Score=29.18 Aligned_cols=97 Identities=11% Similarity=0.266 Sum_probs=64.1
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.|+..|.| ...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+..+..+++|++-+.+-.-.+.
T Consensus 46 Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~---- 119 (301)
T 1xky_A 46 GTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD--KRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYN---- 119 (301)
T ss_dssp TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSS----
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC----
Confidence 58889998854 555788888899988877633 23455555433222 234556677789999988766543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ ++ + ++|..|+
T Consensus 120 ----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 148 (301)
T 1xky_A 120 ----K-PSQEGMYQHFKAIAESTPLP---V-MLYNVPG 148 (301)
T ss_dssp ----C-CCHHHHHHHHHHHHHTCSSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhcCCC---E-EEEeCcc
Confidence 2 2667777777776665 44 3 4677885
No 302
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=44.37 E-value=23 Score=31.10 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceE---eEecCCCCCCH-HHHHHHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNL---DLIYALPNQTL-SELMLDLNY 191 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~---dlI~GlPgqt~-e~~~~~l~~ 191 (391)
++.++.++++|++.|.+....+.+ .. ++.+..+.++++ +. +.. .-+++-+ .+. +.+.+.++.
T Consensus 26 ~~~l~~a~~~G~~~vEl~~~~~~~---------~~--~~~~~~~~l~~~gl~-i~~~~~~~~~~~~-~~~~~~~~~~i~~ 92 (264)
T 1yx1_A 26 ASFLPLLAMAGAQRVELREELFAG---------PP--DTEALTAAIQLQGLE-CVFSSPLELWRED-GQLNPELEPTLRR 92 (264)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSS---------CC--CHHHHHHHHHHTTCE-EEEEEEEEEECTT-SSBCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEHHhcCC---------CH--HHHHHHHHHHHcCCE-EEEecchhhcCCc-hhHHHHHHHHHHH
Confidence 357888888899988887543222 11 233444445555 43 221 1122322 255 778888899
Q ss_pred HHhcCCCeEEEec
Q psy2383 192 AIQYSPPHLSLYS 204 (391)
Q Consensus 192 ~~~l~~~~is~y~ 204 (391)
+.++|++.|.+.+
T Consensus 93 A~~lGa~~v~~~~ 105 (264)
T 1yx1_A 93 AEACGAGWLKVSL 105 (264)
T ss_dssp HHHTTCSEEEEEE
T ss_pred HHHcCCCEEEEec
Confidence 9999988887754
No 303
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=44.30 E-value=30 Score=31.54 Aligned_cols=117 Identities=8% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
.+.++...+++-..+++.+++.| |....|+.++-.++++.+.+..+-.-.+=+.+-++-..-+-+..+..+++|++.+
T Consensus 24 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadav 103 (300)
T 3eb2_A 24 ADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGI 103 (300)
T ss_dssp HHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Q ss_pred EEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCC
Q psy2383 132 SIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQT 181 (391)
Q Consensus 132 siGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 181 (391)
.+-.-.+.. .+.+.+.+-.+.+.++.+ +-+ ++|..|+-|
T Consensus 104 lv~~P~y~~---------~~~~~l~~~f~~va~a~~-lPi-ilYn~P~~t 142 (300)
T 3eb2_A 104 LAILEAYFP---------LKDAQIESYFRAIADAVE-IPV-VIYTNPQFQ 142 (300)
T ss_dssp EEEECCSSC---------CCHHHHHHHHHHHHHHCS-SCE-EEEECTTTC
T ss_pred EEcCCCCCC---------CCHHHHHHHHHHHHHHCC-CCE-EEEECcccc
No 304
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=44.28 E-value=1.1e+02 Score=28.28 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=38.1
Q ss_pred CeeEEEEeCCCCCCCCHHHH--------HHHHHHHH-HhCCCC-CCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEe
Q psy2383 68 KIHTIFIGGGTPSLISDTGL--------DYLLKNIK-KLLLFK-KNISITLEANPSTFEIEKFHSYSIIGINRLSIG 134 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l--------~~ll~~i~-~~~~~~-~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiG 134 (391)
+++.|++.+...++++++.+ +++++.++ +..+.. ++..+.+=+. + +...++.+++.|++-+++.
T Consensus 210 Gad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~-G--~~~~l~~l~~~g~d~i~~d 283 (367)
T 1r3s_A 210 GAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK-D--GHFALEELAQAGYEVVGLD 283 (367)
T ss_dssp TCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET-T--CGGGHHHHTTSSCSEEECC
T ss_pred CCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC-C--cHHHHHHHHhcCCCEEEeC
Confidence 57778777766678888764 55666666 431100 0122222221 1 2458889999999977763
No 305
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=44.21 E-value=31 Score=26.76 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=34.7
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcch
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSFG 377 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~G 377 (391)
+...+.+.||++...+...+..|+..|+++.. +....+++.-
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEEecCc
Confidence 36778899999988899999999999999865 6677777643
No 306
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=44.20 E-value=62 Score=29.11 Aligned_cols=113 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCC
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGIN 129 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~ 129 (391)
.+.++...+++-..+++.++..| |....|+.++-.++++.+.+. ......+-+-+...+. +-+..+..+++|++
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~--~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 97 (289)
T 2yxg_A 20 FDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDV--VNGRVQVIAGAGSNCTEEAIELSVFAEDVGAD 97 (289)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH--HTTSSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHH--hCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Q ss_pred EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 130 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 130 risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
.+.+-.-.+.. .+.+.+.+-.+.+.++.+ +-+ ++|..|+
T Consensus 98 avlv~~P~y~~---------~s~~~l~~~f~~ia~a~~-lPi-ilYn~P~ 136 (289)
T 2yxg_A 98 AVLSITPYYNK---------PTQEGLRKHFGKVAESIN-LPI-VLYNVPS 136 (289)
T ss_dssp EEEEECCCSSC---------CCHHHHHHHHHHHHHHCS-SCE-EEEECHH
T ss_pred EEEECCCCCCC---------CCHHHHHHHHHHHHHhcC-CCE-EEEeCcc
No 307
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=44.11 E-value=32 Score=31.93 Aligned_cols=48 Identities=15% Similarity=0.303 Sum_probs=40.5
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE-cCC--eEEeCcchHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR-NNK--NIKPTSFGRYF 380 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~-~~~--~~~lT~~G~~~ 380 (391)
..++.+++.+..|.+...+...|..|...|++.. +++ .+.+|+.+.++
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l 98 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLL 98 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGG
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhh
Confidence 4588999999999988778899999999999998 456 89999887655
No 308
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=44.06 E-value=67 Score=25.45 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=34.0
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc--CCeEEeCc
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN--NKNIKPTS 375 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~--~~~~~lT~ 375 (391)
..+.+.++.+++...+.+.+..|.+.|||.-. ++.++|+.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar 66 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKK 66 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecCCCCceecC
Confidence 78889999999988889999999999999754 56688874
No 309
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=44.05 E-value=66 Score=29.20 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=48.7
Q ss_pred HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC------C-------CHH
Q psy2383 118 EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN------Q-------TLS 183 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg------q-------t~e 183 (391)
+.++.++++|++.|.++.......... .+..++.+..+.+.++ +..+++-.+.++|. . +.+
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~-----~~~~~~~~l~~~l~~~gL~~~~i~~~~~~~~~~~l~~~d~~~r~~~~~ 109 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYA-----QDLENYTNLRHYLDSEGLENVKISTNVGATRTFDPSSNYPEQRQEALE 109 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHH-----HHHHHHHHHHHHHHHTTCTTCEEEEECCCCSSSCTTCSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccc-----cchHHHHHHHHHHHHCCCCcceeEEEeccCCCCCCCCCCHHHHHHHHH
Confidence 789999999999999987654332111 1123455555556666 54222332334431 1 236
Q ss_pred HHHHHHHHHHhcCCCeE
Q psy2383 184 ELMLDLNYAIQYSPPHL 200 (391)
Q Consensus 184 ~~~~~l~~~~~l~~~~i 200 (391)
.+.+.++.+.++|++.|
T Consensus 110 ~~~~~i~~A~~lG~~~v 126 (335)
T 2qw5_A 110 YLKSRVDITAALGGEIM 126 (335)
T ss_dssp HHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 77888899999999988
No 310
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=43.91 E-value=39 Score=29.47 Aligned_cols=159 Identities=17% Similarity=0.258 Sum_probs=85.6
Q ss_pred EeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCC
Q psy2383 74 IGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTH 150 (391)
Q Consensus 74 ~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~ 150 (391)
+-+|+ |++ +- --.+++.+++..+. ...+.+-+ +| ...++.+.++|.+.|++-.+++.+
T Consensus 33 vmDG~fvpn~-t~--G~~~v~~lr~~~~~--~~dvhLmv~dp----~~~i~~~~~aGAd~itvh~Ea~~~---------- 93 (231)
T 3ctl_A 33 IMDGHFVPNL-TL--SPFFVSQVKKLATK--PLDCHLMVTRP----QDYIAQLARAGADFITLHPETING---------- 93 (231)
T ss_dssp EECSSSSSCC-CB--CHHHHHHHHTTCCS--CEEEEEESSCG----GGTHHHHHHHTCSEEEECGGGCTT----------
T ss_pred EEeCccCccc-hh--cHHHHHHHHhccCC--cEEEEEEecCH----HHHHHHHHHcCCCEEEECcccCCc----------
Confidence 33666 643 21 23467777776432 24555554 44 346889999999999999877411
Q ss_pred CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHH
Q psy2383 151 DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAV 229 (391)
Q Consensus 151 ~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~ 229 (391)
...++++.++++ .. +.+.+ -|+...+.+.. +++ ++|.|-+ .++.||+. .+. -.|..-+.
T Consensus 94 ---~~~~~i~~i~~~G~k-~gv~l---np~tp~~~~~~----~l~-~~D~Vlv--msV~pGfg--gQ~--f~~~~l~k-- 153 (231)
T 3ctl_A 94 ---QAFRLIDEIRRHDMK-VGLIL---NPETPVEAMKY----YIH-KADKITV--MTVDPGFA--GQP--FIPEMLDK-- 153 (231)
T ss_dssp ---THHHHHHHHHHTTCE-EEEEE---CTTCCGGGGTT----TGG-GCSEEEE--ESSCTTCS--SCC--CCTTHHHH--
T ss_pred ---cHHHHHHHHHHcCCe-EEEEE---ECCCcHHHHHH----HHh-cCCEEEE--eeeccCcC--Ccc--ccHHHHHH--
Confidence 244678888888 55 66766 35533333322 222 5776655 45677754 221 12333322
Q ss_pred HHHHHHHHHHHCCCc-eecccccccCCccchhhh--hhhcCCcEEEeCcCc
Q psy2383 230 MQDKITSLLKNNYYK-NYEISAYSKTGYESQHNL--NYWKFGDYLGIGAGS 277 (391)
Q Consensus 230 ~~~~~~~~L~~~Gy~-~ye~~~fa~~g~~~~~n~--~yw~~~~~lG~G~gA 277 (391)
....++...+.|+. ..++. |--...|. ..-.+.|.+-.|.||
T Consensus 154 -I~~lr~~~~~~~~~~~I~Vd-----GGI~~~~~~~~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 154 -LAELKAWREREGLEYEIEVD-----GSCNQATYEKLMAAGADVFIVGTSG 198 (231)
T ss_dssp -HHHHHHHHHHHTCCCEEEEE-----SCCSTTTHHHHHHHTCCEEEECTTT
T ss_pred -HHHHHHHHhccCCCceEEEE-----CCcCHHHHHHHHHcCCCEEEEccHH
Confidence 23445556666663 23332 21112222 123467888888333
No 311
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=43.76 E-value=47 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=38.0
Q ss_pred eecCHhhHHHHHHHHhhhh--cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE
Q psy2383 313 KKIEKKCLIFEFMLNALRL--KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK 365 (391)
Q Consensus 313 ~~l~~~~~~~e~~~~~lr~--~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~ 365 (391)
..++.++.. ++..+.- ..|+...++..+.+.+...+...|+.|++.|||.
T Consensus 16 ~~Lt~~q~~---Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 16 KGSDNQEKL---VYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CCSCSSHHH---HHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHH---HHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 346666542 2233333 3589999999999999888889999999999998
No 312
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=43.56 E-value=31 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEc-----CC----eEEeCcchHHHHHHHHHH
Q psy2383 346 INIKIIESKLKNAEKLGLLKRN-----NK----NIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 346 ~~~~~~~~~l~~l~~~gl~~~~-----~~----~~~lT~~G~~~~~~i~~~ 387 (391)
.+...+.+.|..|++.|||+.. ++ .+.+|++|+-.....+..
T Consensus 69 ~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~ 119 (204)
T 3l9f_A 69 GTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQS 119 (204)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHS
T ss_pred CCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhc
Confidence 3344578999999999999753 21 499999999887765543
No 313
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=43.55 E-value=59 Score=28.33 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeCCC-----CCCHHH----HHHhHHCCCCEEEE
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEANPS-----TFEIEK----FHSYSIIGINRLSI 133 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~p~-----~l~~e~----l~~l~~~Gv~risi 133 (391)
.+.+.++.+++. ++ ..+|+.. .+|. .++++. .+.+++.|+..+++
T Consensus 15 ~~~~~~~~~~~~-G~-~~vEl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 68 (270)
T 3aam_A 15 GVAGAVEEATAL-GL-TAFQIFA-KSPRSWRPRALSPAEVEAFRALREASGGLPAVI 68 (270)
T ss_dssp HHHHHHHHHHHH-TC-SCEEEES-SCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEEE
T ss_pred cHHHHHHHHHHc-CC-CEEEEeC-CCCCcCcCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 455666666543 32 2356622 1221 233333 33455567755554
No 314
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=43.53 E-value=74 Score=27.83 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=36.7
Q ss_pred hhhhcCCC-ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 328 ALRLKDGF-SPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 328 ~lr~~~g~-~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
++.--..+ +-.++.+.||++-..+...|+.|+++|++...+....+++
T Consensus 29 ~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt~V~~ 77 (248)
T 3f8m_A 29 GMRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTVVAR 77 (248)
T ss_dssp HCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEEECC
T ss_pred CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEEcc
Confidence 44333345 5678999999998889999999999999998655555553
No 315
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=43.52 E-value=48 Score=30.40 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=64.2
Q ss_pred CeeEEEEeCC--CCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGG--TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGG--tps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.|+..|. ....|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 58 Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~---- 131 (315)
T 3na8_A 58 GVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVA--HRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYW---- 131 (315)
T ss_dssp TCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSS----
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC----
Confidence 5888998884 4555788888889888877632 23445554432222 345556677789999999776654
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ ++ + ++|..|+
T Consensus 132 ----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 160 (315)
T 3na8_A 132 ----K-LNEAEVFQHYRAVGEAIGVP---V-MLYNNPG 160 (315)
T ss_dssp ----C-CCHHHHHHHHHHHHHHCSSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhCCCc---E-EEEeCcc
Confidence 2 3667777777777766 44 3 4677775
No 316
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.48 E-value=41 Score=27.27 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE
Q psy2383 324 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK 365 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~ 365 (391)
.++..|.....++..++.+..|.+...+...++.|++.|++.
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 344556666678999999999999888999999999999987
No 317
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=43.47 E-value=46 Score=28.95 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=59.3
Q ss_pred CCCCCCHH-----HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHH---HHhHHCCCCEEEEecCCCCHHHHHHhCCC
Q psy2383 78 TPSLISDT-----GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKF---HSYSIIGINRLSIGIQSFNNKYLNILGRT 149 (391)
Q Consensus 78 tps~l~~~-----~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l---~~l~~~Gv~risiGvqS~~~~~l~~l~R~ 149 (391)
+||++..+ .+.+++..|.+..+ ..+++|+.+.+. ++.+ +.|.+.+ .++-+-| +
T Consensus 28 NPsli~k~~~~g~~~~~~~~ei~~~v~----G~Vs~EV~a~d~-e~mi~eA~~L~~~~-~nv~IKI-------------P 88 (223)
T 3s1x_A 28 NPTLISKEAVNGKKYGDIIREILKIVD----GPVSVEVVSTKY-EGMVEEARKIHGLG-DNAVVKI-------------P 88 (223)
T ss_dssp CHHHHHHHSCTTCCHHHHHHHHHHHCS----SCEEEECCCCSH-HHHHHHHHHHHHTC-TTEEEEE-------------E
T ss_pred CHHHHHhhhccCCCHHHHHHHHHHhCC----CCEEEEEccCCH-HHHHHHHHHHHHhC-CCEEEEe-------------C
Confidence 46665443 35566666666532 378999876432 2333 4455554 3455444 2
Q ss_pred CCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 150 HDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 150 ~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
.| .+-.++++.+.+. ++ +|+-+||.. .|. -.+.+.|++.||.|-
T Consensus 89 ~T-~eGl~A~~~L~~~GI~-vn~TlifS~-~QA--------~~Aa~AGa~yISPfv 133 (223)
T 3s1x_A 89 MT-EDGLRAIKTLSSEHIN-TNCTLVFNP-IQA--------LLAAKAGVTYVSPFV 133 (223)
T ss_dssp SS-HHHHHHHHHHHHTTCC-EEEEEECSH-HHH--------HHHHHTTCSEEEEBS
T ss_pred CC-HHHHHHHHHHHHCCCc-EEEEEeCCH-HHH--------HHHHHcCCeEEEeec
Confidence 33 3466788888877 76 999999985 222 235577999888775
No 318
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=43.44 E-value=1.5e+02 Score=26.04 Aligned_cols=175 Identities=9% Similarity=0.042 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhccCcccCCCeeEEEEeCCCC--CCCCHHHHHHHHHHHHHhCCC--CCCcEEEEeeCCCCC--C-HH
Q psy2383 46 EKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP--SLISDTGLDYLLKNIKKLLLF--KKNISITLEANPSTF--E-IE 118 (391)
Q Consensus 46 ~~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtp--s~l~~~~l~~ll~~i~~~~~~--~~~~eit~e~~p~~l--~-~e 118 (391)
+.+.++.+.+-|+... .+ +++.|.+.|+.+ ..-..+.++++.+.+++.... ..++.+.+|..+..+ + ++
T Consensus 103 r~~~~~~~~~~i~~A~-~l---G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~ 178 (295)
T 3cqj_A 103 RAQGLEIMRKAIQFAQ-DV---GIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISK 178 (295)
T ss_dssp HHHHHHHHHHHHHHHH-HH---TCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSSGGGCSHHH
T ss_pred HHHHHHHHHHHHHHHH-Hc---CCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCCcccCCHHH
Confidence 4445555555554432 22 345555555432 122344555555555443221 124689999876543 3 55
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceE-eEec----CCC-CCCHHHHHHHHHHH
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNL-DLIY----ALP-NQTLSELMLDLNYA 192 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~-dlI~----GlP-gqt~e~~~~~l~~~ 192 (391)
.++.+++.+-..+.+-+.+++ .... +.+. .+.++.+...+..+.+ |.-- ..| |+-.-+|.+-++.+
T Consensus 179 ~~~l~~~v~~~~vg~~~D~~h---~~~~--g~d~---~~~l~~~~~~i~~vHl~D~~~g~~~~~p~G~G~id~~~~~~~L 250 (295)
T 3cqj_A 179 ALGYAHYLNNPWFQLYPDIGN---LSAW--DNDV---QMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETL 250 (295)
T ss_dssp HHHHHHHHCCTTEEEECBHHH---HHSS--SCCH---HHHHHHTGGGBCCEEECEEETTEEEEECTTSSSCCHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEeccch---Hhhc--CCCH---HHHHHHhccceEEEEeecCCCCccCCcCCCCCccCHHHHHHHH
Confidence 667777777777777555433 2222 2333 3444444444333433 2211 234 77666788888888
Q ss_pred HhcCCCe-EEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 193 IQYSPPH-LSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 193 ~~l~~~~-is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.+.+.+. +++=. .+ + . . ....+...+-.....+.+.++|.
T Consensus 251 ~~~gy~g~i~lE~---~~--~--~-~---~~~~~~~~~s~~~l~~~~~~~g~ 291 (295)
T 3cqj_A 251 KQSGYCGPYLIEM---WS--E--T-A---EDPAAEVAKARDWVKARMAKAGM 291 (295)
T ss_dssp HHTTCCSCEEECC---CG--G--G-S---SCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCceeEEEEe---cC--C--C-C---CCHHHHHHHHHHHHHHHHHHhcc
Confidence 8888763 22211 11 1 0 0 11123344455666677777764
No 319
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=43.35 E-value=68 Score=30.59 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhh-cccceEeEecCCCCCC----------HHHHHHHHHHHHhcCCCeEEE
Q psy2383 150 HDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT----------LSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 150 ~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt----------~e~~~~~l~~~~~l~~~~is~ 202 (391)
.+.+++.+.++.|++. +. |-+|+++..-++. .+.+.+.+++-++.|+|.+.+
T Consensus 79 Gt~~d~~~lv~~ah~~Gi~-vilD~V~NH~s~~~wF~~q~~~Vr~~~~~~~~~Wl~~gvDGfRl 141 (424)
T 2dh2_A 79 GSKEDFDSLLQSAKKKSIR-VILDLTPNYRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQV 141 (424)
T ss_dssp CCHHHHHHHHHHHHHTTCE-EEEECCTTTTSSSTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCE-EEEEECCCcCCCcccccccCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5889999999999999 87 9999999865532 345666777777788887765
No 320
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}
Probab=43.28 E-value=1e+02 Score=29.98 Aligned_cols=128 Identities=10% Similarity=0.115 Sum_probs=74.4
Q ss_pred CCHHHHHHhHHCCCCEEEEecCCCCHHHHH--HhCCCCCHHHHHHHHHHHHhh-cccceEeEecCC--CCCCHHHHHHHH
Q psy2383 115 FEIEKFHSYSIIGINRLSIGIQSFNNKYLN--ILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYAL--PNQTLSELMLDL 189 (391)
Q Consensus 115 l~~e~l~~l~~~Gv~risiGvqS~~~~~l~--~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~Gl--Pgqt~e~~~~~l 189 (391)
.+++.++.++++|+|-|-|.+...++.... ..+.....+.+.++|+.|.++ +. |-+|+=.+- |..+.+.+.+-.
T Consensus 40 ~~~~d~~~i~~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~vv~~a~~~Gl~-VIlD~H~~~~~~~~~~~~~~~~w 118 (491)
T 2y8k_A 40 APYDQIARVKELGFNAVHLYAECFDPRYPAPGSKAPGYAVNEIDKIVERTRELGLY-LVITIGNGANNGNHNAQWARDFW 118 (491)
T ss_dssp CCHHHHGGGGGGTCCEEEEEEEECCTTTTSTTCCCTTTTHHHHHHHHHHHHHHTCE-EEEEEECTTCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECceeecccccCCCccChhHHHHHHHHHHHHHHHCCCE-EEEECCCCCCCccccHHHHHHHH
Confidence 467889999999999888877533211000 112223467899999999999 75 777775442 335677777777
Q ss_pred HHHHh-cC-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 190 NYAIQ-YS-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 190 ~~~~~-l~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
+.+.+ ++ -++|- |.+.=+|...- ..........+...++++.+.+..++.+-.+
T Consensus 119 ~~iA~ryk~~p~Vi-~el~NEP~~w~-~~~~~~~~~~~~~~~~~~~~~~~IR~~dp~~ 174 (491)
T 2y8k_A 119 KFYAPRYAKETHVL-YEIHNEPVAWG-PPYSSSTANPPGAVDMEIDVYRIIRTYAPET 174 (491)
T ss_dssp HHHHHHHTTCTTEE-EECCSSCSSSC-SCTTSTTSSSTTHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhCCCCceE-EEeecCCCCCC-CccccccccHHHHHHHHHHHHHHHHhhCCCc
Confidence 76653 32 23464 88877775310 0000000011124556666667777666443
No 321
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=43.21 E-value=1e+02 Score=27.49 Aligned_cols=109 Identities=6% Similarity=0.001 Sum_probs=61.5
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEec-----CCCC-----------
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY-----ALPN----------- 179 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~-----GlPg----------- 179 (391)
++.++.++++|++.|.+.... +.. . -..+.+++ .+.++++ +.-+++..-+ .-|.
T Consensus 32 ~~~l~~~a~~G~~~VEl~~~~--~~~---~-~~~~~~~~---~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~ 102 (303)
T 3l23_A 32 AANLRKVKDMGYSKLELAGYG--KGA---I-GGVPMMDF---KKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEV 102 (303)
T ss_dssp HHHHHHHHHTTCCEEEECCEE--TTE---E-TTEEHHHH---HHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTT
T ss_pred HHHHHHHHHcCCCEEEecccc--Ccc---c-CCCCHHHH---HHHHHHcCCeEEEEecccccccccCcccccccccchhh
Confidence 578999999999999987532 100 0 01233333 3444555 4422232211 1132
Q ss_pred --CCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 180 --QTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 180 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
++.+.+.+.++.+.++|.+.|.+... +. . . ....-+...+.+..+.+...++|-.
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~---~~-----~-~-~~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPMM---PT-----I-T-THDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECSC---CC-----C-C-SHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCC---CC-----C-C-CHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 23567888999999999999876321 10 0 0 0011133455667777888888876
No 322
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=42.90 E-value=78 Score=28.67 Aligned_cols=97 Identities=10% Similarity=0.091 Sum_probs=64.1
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCC-CcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKK-NISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~-~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
+++.++..|.| ...|+.++-.++++.+.+..+ . ...+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 41 Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~--g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~--- 115 (301)
T 3m5v_A 41 GIDAVVPVGTTGESATLTHEEHRTCIEIAVETCK--GTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYN--- 115 (301)
T ss_dssp TCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS---
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC---
Confidence 58899998844 455688888888888877632 2 3556555433222 344556677789999998776654
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 116 -----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 144 (301)
T 3m5v_A 116 -----K-PTQQGLYEHYKAIAQSVDIP---V-LLYNVPG 144 (301)
T ss_dssp -----C-CCHHHHHHHHHHHHHHCSSC---E-EEEECHH
T ss_pred -----C-CCHHHHHHHHHHHHHhCCCC---E-EEEeCch
Confidence 2 2567777777776666 44 3 4677775
No 323
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=42.87 E-value=1.8e+02 Score=25.73 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=68.9
Q ss_pred CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC-C---CHHHHHHHHH
Q psy2383 116 EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN-Q---TLSELMLDLN 190 (391)
Q Consensus 116 ~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-q---t~e~~~~~l~ 190 (391)
+++.++.++++|+|-|-+.+.... ... ....+.+.++++.|.++ +. |-+|+- +.|| + +.+.+.+-.+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~-----~~~-~~~~~~ld~~v~~a~~~Gi~-Vild~H-~~~~~~~~~~~~~~~~~w~ 104 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGG-----QWE-KDDIDTIREVIELAEQNKMV-AVVEVH-DATGRDSRSDLNRAVDYWI 104 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSS-----SSC-CCCHHHHHHHHHHHHTTTCE-EEEEEC-TTTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEecCCC-----ccC-ccHHHHHHHHHHHHHHCCCE-EEEEec-cCCCCCcchhHHHHHHHHH
Confidence 567899999999997777664110 000 13567788999999999 65 667763 4454 2 2333333333
Q ss_pred HHH-hcC--CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce
Q psy2383 191 YAI-QYS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN 245 (391)
Q Consensus 191 ~~~-~l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ 245 (391)
.+. +++ ++.| +|.+.=+|... .+.......+..+.+.+++.+-.+
T Consensus 105 ~ia~~y~~~~~~v-~~el~NEP~~~---------~~~~~~~~~~~~~~~~IR~~d~~~ 152 (294)
T 2whl_A 105 EMKDALIGKEDTV-IINIANEWYGS---------WDGSAWADGYIDVIPKLRDAGLTH 152 (294)
T ss_dssp HTHHHHTTCTTTE-EEECCTTCCCS---------SCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCCCeE-EEEecCCCCCC---------CChHHHHHHHHHHHHHHHhcCCCc
Confidence 333 232 4567 67877777532 122344566777888888877654
No 324
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=42.72 E-value=51 Score=28.72 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2383 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 179 gqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
.+-.+.+++.++.+.++|+.++++|.++.+- +++ | .++...++....+.|.+
T Consensus 33 ~~G~~~~~~i~~~c~~lGI~~lTlYaFStEN----w~R-----p-~~EV~~Lm~L~~~~l~~ 84 (225)
T 3ugs_B 33 SQGVKTMQKLMEVCMEENISNLSLFAFSTEN----WKR-----P-KDEIDFIFELLDRCLDE 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEEEEESGG----GGS-----C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEcccc----cCC-----C-HHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998543 222 2 34555566666666654
No 325
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=42.51 E-value=1.1e+02 Score=27.42 Aligned_cols=77 Identities=6% Similarity=0.051 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCC-C-CHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPST-F-EIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~-l-~~e~l~~l~~ 125 (391)
.|+..+.+++... +++.|++.+ |-..+.|.++.++++.+++.++ +..+.+-++.+. + ....+..+ +
T Consensus 156 ~~~~~~~~~~~~~-------Ga~~i~l~D-T~G~~~P~~~~~lv~~l~~~~~---~~~i~~H~Hn~~Gla~An~laA~-~ 223 (298)
T 2cw6_A 156 AKVAEVTKKFYSM-------GCYEISLGD-TIGVGTPGIMKDMLSAVMQEVP---LAALAVHCHDTYGQALANTLMAL-Q 223 (298)
T ss_dssp HHHHHHHHHHHHT-------TCSEEEEEE-TTSCCCHHHHHHHHHHHHHHSC---GGGEEEEEBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHc-------CCCEEEecC-CCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCCchHHHHHHHHH-H
Confidence 4566666666543 467888886 6778899999999999999864 346666664432 2 34455555 5
Q ss_pred CCCCEEEEecC
Q psy2383 126 IGINRLSIGIQ 136 (391)
Q Consensus 126 ~Gv~risiGvq 136 (391)
+|+++|...+-
T Consensus 224 aGa~~vd~tv~ 234 (298)
T 2cw6_A 224 MGVSVVDSSVA 234 (298)
T ss_dssp TTCCEEEEBTT
T ss_pred hCCCEEEeecc
Confidence 89999987554
No 326
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=42.50 E-value=1.8e+02 Score=25.57 Aligned_cols=134 Identities=12% Similarity=0.181 Sum_probs=75.5
Q ss_pred eeEEEEeCCC--CCC-CCHHHHHHHHHHHHHhC-CCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 69 IHTIFIGGGT--PSL-ISDTGLDYLLKNIKKLL-LFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 69 ~~~i~~gGGt--ps~-l~~~~l~~ll~~i~~~~-~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
.-++-+.+|. |++ +.+ .+++.|++.. +. ...+.+-+ +| ...++.+.++|++.|++..++.+
T Consensus 56 ~lHvDVmDg~FVpnit~G~----~~v~~lr~~~p~~--~ldvHLmv~~p----~~~i~~~~~aGAd~itvH~Ea~~---- 121 (246)
T 3inp_A 56 NIHFDVMDNHYVPNLTFGP----MVLKALRDYGITA--GMDVHLMVKPV----DALIESFAKAGATSIVFHPEASE---- 121 (246)
T ss_dssp CEEEEEEBSSSSSCBCCCH----HHHHHHHHHTCCS--CEEEEEECSSC----HHHHHHHHHHTCSEEEECGGGCS----
T ss_pred EEEEEecCCCcCcchhcCH----HHHHHHHHhCCCC--eEEEEEeeCCH----HHHHHHHHHcCCCEEEEccccch----
Confidence 4566677776 333 233 4566667664 32 23444443 34 55899999999999999998753
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMP 222 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p 222 (391)
++.++++.++++ .. +.+.+- |+...+.+. .+++ .+|.|-+- ++.||.. .+. -.|
T Consensus 122 ----------~~~~~i~~ir~~G~k-~Gvaln---p~Tp~e~l~----~~l~-~vD~VlvM--sV~PGfg--GQ~--fi~ 176 (246)
T 3inp_A 122 ----------HIDRSLQLIKSFGIQ-AGLALN---PATGIDCLK----YVES-NIDRVLIM--SVNPGFG--GQK--FIP 176 (246)
T ss_dssp ----------CHHHHHHHHHTTTSE-EEEEEC---TTCCSGGGT----TTGG-GCSEEEEE--CSCTTC----CC--CCT
T ss_pred ----------hHHHHHHHHHHcCCe-EEEEec---CCCCHHHHH----HHHh-cCCEEEEe--eecCCCC--Ccc--cch
Confidence 245777888888 54 666654 443333332 2222 37766443 5678753 221 123
Q ss_pred CHHHHHHHHHHHHHHHHHCCCc
Q psy2383 223 SNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
..-+ .....++...++|+.
T Consensus 177 ~~l~---KI~~lr~~~~~~~~~ 195 (246)
T 3inp_A 177 AMLD---KAKEISKWISSTDRD 195 (246)
T ss_dssp THHH---HHHHHHHHHHHHTSC
T ss_pred HHHH---HHHHHHHHHHhcCCC
Confidence 3322 233445566666754
No 327
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=42.36 E-value=1.2e+02 Score=29.46 Aligned_cols=78 Identities=12% Similarity=0.235 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~ 125 (391)
.|+-.+.+++... +++.|.+.+ |-..+.|..+.+++..+++.++ ..+.+=++ .+.-....+..+ +
T Consensus 158 e~~~~~a~~l~~~-------Gad~I~l~D-T~G~~~P~~v~~lv~~l~~~~~----~~i~~H~Hnd~GlAvAN~laAv-~ 224 (464)
T 2nx9_A 158 QTWVDVAQQLAEL-------GVDSIALKD-MAGILTPYAAEELVSTLKKQVD----VELHLHCHSTAGLADMTLLKAI-E 224 (464)
T ss_dssp HHHHHHHHHHHHT-------TCSEEEEEE-TTSCCCHHHHHHHHHHHHHHCC----SCEEEEECCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHC-------CCCEEEEcC-CCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCChHHHHHHHHH-H
Confidence 4556666666543 467899977 6777889999999999999863 34555553 333345556555 6
Q ss_pred CCCCEEEEecCCC
Q psy2383 126 IGINRLSIGIQSF 138 (391)
Q Consensus 126 ~Gv~risiGvqS~ 138 (391)
+|++.|.-.+-.+
T Consensus 225 AGa~~VD~ti~g~ 237 (464)
T 2nx9_A 225 AGVDRVDTAISSM 237 (464)
T ss_dssp TTCSEEEEBCGGG
T ss_pred hCCCEEEEecccc
Confidence 8999998877643
No 328
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=42.30 E-value=98 Score=27.28 Aligned_cols=85 Identities=11% Similarity=0.015 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHH
Q psy2383 78 TPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKY 157 (391)
Q Consensus 78 tps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~ 157 (391)
|||.-.+.+..+|.....-..-+..-.-|-+|..+. .++..-+.|++.|+....+.+.+-. -.+.-++.....+-..
T Consensus 9 TPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~-~~~~v~~lL~~sgl~y~HL~~~~~~--~~~~~~~prg~~qRn~ 85 (246)
T 2d0j_A 9 TPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAAA-RSELVSRFLARAGLPSTHLHVPTPR--RYKRPGLPRATEQRNA 85 (246)
T ss_dssp EEECCSTTHHHHHHHHHHHHTTSTTEEEEEEESSSS-CCHHHHHHHHHSCSCEEEEECCCCC--C----CCCCCHHHHHH
T ss_pred eCCCCccchhHHHHHHHHHHhcCCceEEEEEcCCCC-CCHHHHHHHHHcCCceEEEecCCcc--ccCCCCCcchHHHHHH
Confidence 888877777666655544433344445566676553 5677888999999999999987632 1222233456677788
Q ss_pred HHHHHHhh
Q psy2383 158 AIEIAKQY 165 (391)
Q Consensus 158 ~i~~~~~~ 165 (391)
|++.+++.
T Consensus 86 AL~~Ir~~ 93 (246)
T 2d0j_A 86 GLAWLRQR 93 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999988
No 329
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=42.22 E-value=49 Score=28.17 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.8
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
..+.....+.+..|++...+...|+.|++.|||...
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~ 61 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESR 61 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 456788899999999988889999999999999874
No 330
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=42.21 E-value=1.2e+02 Score=27.74 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=40.4
Q ss_pred CeeEEEEeC---CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCC--CCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 68 KIHTIFIGG---GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPST--FEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 68 ~~~~i~~gG---Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~--l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
.+-+++.=+ |.||. +++.++++++.|++.. +.-|.+.+ .... -.++.++.+.+..-.-.|+.+=|.
T Consensus 47 aivHlHvRdp~dG~ps~-d~~~y~e~i~~IR~~~----d~iI~~TTgg~~~~~~~~eeR~~~~~~~~Pe~aSln~Gs~ 119 (314)
T 3lot_A 47 GMVHIHARDPKDGRPTT-DVEVFRYICREIKKQS----DVVINVTTGGGGTLGIPVEERAKVVPALKPEIATFNMGSM 119 (314)
T ss_dssp SEEEECEECTTTCCEEC-CHHHHHHHHHHHHHHC----CCEEEECSSTTGGGTCCHHHHTTHHHHHCCSEEEEECCCE
T ss_pred CEEEEeecCCCCCCcCC-CHHHHHHHHHHHHhcC----CeEEEeCCCCcCCCCCCHHHHHHHHHhcCCceeeecCCCc
Confidence 455565554 77875 8889999999999862 23344433 2221 134566666666666666666554
No 331
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=42.09 E-value=1.3e+02 Score=26.05 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=46.9
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc--cceEeEec--CCCC-------CCHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN--NFNLDLIY--ALPN-------QTLSE 184 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~--~v~~dlI~--GlPg-------qt~e~ 184 (391)
++.++.++++|++.|.+..... .. ......+.+++.+..+.++++ +. .+++..-+ .+.. .+.+.
T Consensus 15 ~~~l~~~~~~G~~~iEl~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~ 90 (287)
T 2x7v_A 15 DRVPQDTVNIGGNSFQIFPHNA--RS--WSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVEL 90 (287)
T ss_dssp GGHHHHHHHTTCSEEEECSCCC--SS--SCCCCCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCc--cc--ccccCCCHHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHH
Confidence 4677888888888888854321 10 011233455666666666666 54 13332111 2211 12456
Q ss_pred HHHHHHHHHhcCCCeEEEec
Q psy2383 185 LMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y~ 204 (391)
+.+.++.+.++|++.|.+++
T Consensus 91 ~~~~i~~A~~lG~~~v~~~~ 110 (287)
T 2x7v_A 91 LKKEVEICRKLGIRYLNIHP 110 (287)
T ss_dssp HHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 67777888888888776643
No 332
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=41.98 E-value=55 Score=28.14 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=33.2
Q ss_pred C-ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCc
Q psy2383 335 F-SPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTS 375 (391)
Q Consensus 335 ~-~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~ 375 (391)
+ +-..+.+.||++-..++..|..|+..|||+... ....+++
T Consensus 31 LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 31 LPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCCcEeeC
Confidence 5 466788999999878999999999999998764 4566654
No 333
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=41.96 E-value=1.9e+02 Score=25.95 Aligned_cols=103 Identities=10% Similarity=0.068 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCCCCcEEEEee---CCCCCCHHHHHHhHHCCCCEEEEecC---CCCHHHHHHh-CCCCCHHHHHHHHHHH
Q psy2383 90 LLKNIKKLLLFKKNISITLEA---NPSTFEIEKFHSYSIIGINRLSIGIQ---SFNNKYLNIL-GRTHDSKQAKYAIEIA 162 (391)
Q Consensus 90 ll~~i~~~~~~~~~~eit~e~---~p~~l~~e~l~~l~~~Gv~risiGvq---S~~~~~l~~l-~R~~~~~~~~~~i~~~ 162 (391)
.++..++.++.-.++.+...+ +|..-....++.++++|+..+ +..= -.|-..++.+ -++-+.++..+.++.+
T Consensus 81 v~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A 159 (286)
T 2p10_A 81 VVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEA 159 (286)
T ss_dssp HHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHH
Confidence 445556666665566777665 465557889999999999877 5432 1345555555 3557899999999999
Q ss_pred Hhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 163 KQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 163 ~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
++. +.++-+ .+ |++ ..+.+.+++||-|.+++
T Consensus 160 ~~~gL~Ti~~--v~-----~~e----eA~amA~agpDiI~~h~ 191 (286)
T 2p10_A 160 HKLDLLTTPY--VF-----SPE----DAVAMAKAGADILVCHM 191 (286)
T ss_dssp HHTTCEECCE--EC-----SHH----HHHHHHHHTCSEEEEEC
T ss_pred HHCCCeEEEe--cC-----CHH----HHHHHHHcCCCEEEECC
Confidence 999 532322 22 333 34566789999987765
No 334
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=41.88 E-value=1.6e+02 Score=26.05 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=59.4
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH------
Q psy2383 71 TIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN------ 144 (391)
Q Consensus 71 ~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~------ 144 (391)
.||+- |||.-.+.+..+|.....-..-+.+-.-|-+|..+ ..+++..+.|++.|+....+++.+ +...+
T Consensus 4 ~I~vV--TPTy~R~~Q~a~LtRLa~TL~~Vp~L~WIVVEd~~-~~t~~va~lL~~sgl~y~HL~~~~--p~~~~~~~~~~ 78 (253)
T 1v84_A 4 TIHVV--TPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAP-RRTPLTARLLRDTGLNYTHLHVET--PRNYKLRGDAR 78 (253)
T ss_dssp EEEEE--EEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSS-SCCHHHHHHHHHHCCEEEEEECCC--CHHHHCC----
T ss_pred EEEEE--eCCCCccchhHHHHHHhhhhccCCceEEEEEeCCC-CCCHHHHHHHHHcCCceEEeecCC--Ccccccccccc
Confidence 45544 88887777766665555444334444566667544 368999999999999999999876 22222
Q ss_pred HhCCCCCHHHHHHHHHHHHhh
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~~ 165 (391)
.-.+.--..+-..|++.+++.
T Consensus 79 ~~~~~rg~~qRn~AL~~Ir~~ 99 (253)
T 1v84_A 79 DPRIPRGTMQRNLALRWLRET 99 (253)
T ss_dssp ---CCTTHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHh
Confidence 112333566777899999886
No 335
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=41.74 E-value=36 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=34.3
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcc
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSF 376 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~ 376 (391)
+...+.+.||++...+...+..|+..|++... +....+++.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~ 78 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGN 78 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEccC
Confidence 66788999999988889999999999999865 456777763
No 336
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=41.63 E-value=91 Score=28.10 Aligned_cols=110 Identities=14% Similarity=0.182 Sum_probs=62.7
Q ss_pred CCCHHHHHHhHHCCCCEEEEecC-----------CCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCC--
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQ-----------SFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN-- 179 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvq-----------S~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-- 179 (391)
.++++.++.|+++|+|.|-+.|. .++++. .+.+.++++.+.++ +. +-+|+- +.++
T Consensus 41 ~~~~~d~~~l~~~G~n~vRi~i~w~~~~~~~~~~~~~~~~---------~~~~d~~v~~a~~~Gi~-vildlh-~~~~~~ 109 (320)
T 3nco_A 41 YIEDEYFKIIKERGFDSVRIPIRWSAHISEKYPYEIDKFF---------LDRVKHVVDVALKNDLV-VIINCH-HFEELY 109 (320)
T ss_dssp CCCHHHHHHHHHHTCCEEEECCCGGGSBCSSTTCCBCHHH---------HHHHHHHHHHHHHTTCE-EEEECC-CCHHHH
T ss_pred cCCHHHHHHHHHCCCCEEEEeeehHHhcCCCCCCccCHHH---------HHHHHHHHHHHHHCCCE-EEEEcC-CCcccc
Confidence 46899999999999998877652 112222 45567888888888 65 555552 2221
Q ss_pred ----CCHHHHHHHHHHHHh-cC--CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCc
Q psy2383 180 ----QTLSELMLDLNYAIQ-YS--PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYK 244 (391)
Q Consensus 180 ----qt~e~~~~~l~~~~~-l~--~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 244 (391)
...+.+.+-.+.+.+ ++ +..+ .|.+.=+|... .+.+.....+..+.+..++.+=.
T Consensus 110 ~~~~~~~~~~~~~~~~ia~~~~~~~~vv-~~~l~NEP~~~---------~~~~~~~~~~~~~~~~IR~~dp~ 171 (320)
T 3nco_A 110 QAPDKYGPVLVEIWKQVAQAFKDYPDKL-FFEIFNEPAQN---------LTPTKWNELYPKVLGEIRKTNPS 171 (320)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTSCTTE-EEECCSCCCTT---------SCHHHHHHHHHHHHHHHHHHCSS
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCCceE-EEEeccCCCCC---------CCHHHHHHHHHHHHHHHHhcCCC
Confidence 123333333333332 22 3334 56555455421 23455566677777777765543
No 337
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=41.41 E-value=30 Score=28.51 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 344455556689999999999998889999999999999964
No 338
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Probab=41.32 E-value=1.8e+02 Score=26.40 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHHHHHhHHCCCCE--EEEecCCCCHHH-HHHhC-----C----CCCHHHHHHHHHHHHhh-cccceEeEecCCCC----
Q psy2383 117 IEKFHSYSIIGINR--LSIGIQSFNNKY-LNILG-----R----THDSKQAKYAIEIAKQY-FNNFNLDLIYALPN---- 179 (391)
Q Consensus 117 ~e~l~~l~~~Gv~r--isiGvqS~~~~~-l~~l~-----R----~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg---- 179 (391)
++.++.++++|+|- +.++-+.+.+.. -..++ . ....+.+.++++.|.+. +. |-+|+-- |+
T Consensus 47 ~~~~~~~~~~G~n~vRi~~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~-vild~h~--~~~~~~ 123 (358)
T 1ece_A 47 RSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLR-IILDRHR--PDCSGQ 123 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCE-EEEEEEE--SBTTBC
T ss_pred HHHHHHHHHcCCCEEEeeccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCE-EEEecCC--CCCCCC
Confidence 78899999999984 555533322210 00000 0 11456678899999999 75 7777753 32
Q ss_pred --------CCHHHHHHHHHHHHhc-C-CCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 180 --------QTLSELMLDLNYAIQY-S-PPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 180 --------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.+.+.+.+-++.+.+. + -+.|-.|.+.=+|.....-... .+.+.....+..+.+..++.+=
T Consensus 124 ~~~w~~~~~~~~~~~~~~~~ia~r~~~~p~v~~~el~NEP~~~~~w~~~---~~~~~~~~~~~~~~~~Ir~~dp 194 (358)
T 1ece_A 124 SALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPHDPACWGCG---DPSIDWRLAAERAGNAVLSVNP 194 (358)
T ss_dssp CSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECSSCCCTTCBSSCC---CTTTBHHHHHHHHHHHHHHHCT
T ss_pred CCCCcCCCccHHHHHHHHHHHHHHhcCCCcEEEEEcccCCCCcccCCCC---CCHHHHHHHHHHHHHHHHhhCC
Confidence 3477777777777753 2 2346667777677543110000 1122333445555566665543
No 339
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=41.05 E-value=1e+02 Score=28.31 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=33.8
Q ss_pred CeeEEEEeCCC----CCCCCHHHHHHHHHHH---HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGGGT----PSLISDTGLDYLLKNI---KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gGGt----ps~l~~~~l~~ll~~i---~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+.|-+||.. +.+-..+.+++++..| ++.+ +++.+++. +.+.+.++.--++|..-|
T Consensus 78 GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~---~~vpISID----T~~~~VaeaAl~aGa~iI 141 (318)
T 2vp8_A 78 GADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAY---PDQLISVD----TWRAQVAKAACAAGADLI 141 (318)
T ss_dssp TCSEEEEC----------CHHHHHHHHHHHHHHHHHHS---TTCEEEEE----CSCHHHHHHHHHHTCCEE
T ss_pred CCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhC---CCCeEEEe----CCCHHHHHHHHHhCCCEE
Confidence 56788888731 2233466788885444 5443 24567774 677888888777787533
No 340
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=41.00 E-value=1.1e+02 Score=28.00 Aligned_cols=99 Identities=10% Similarity=0.085 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+..+.+++... +++.|.+.+ |-..+.|..+.+++..+++.++-.+...+.+=++ .+.-....+..+
T Consensus 150 ~~~~~~~~~~~~~~-------G~~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~- 220 (325)
T 3eeg_A 150 QAFLARMVEAVIEA-------GADVVNIPD-TTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAAL- 220 (325)
T ss_dssp HHHHHHHHHHHHHH-------TCSEEECCB-SSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhc-------CCCEEEecC-ccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHH-
Confidence 35666666666543 367888876 7778899999999999999865212245555553 222244555555
Q ss_pred HCCCCEEEEecCCCCHHHHHHhCCC--CCHHHHHHHHHH
Q psy2383 125 IIGINRLSIGIQSFNNKYLNILGRT--HDSKQAKYAIEI 161 (391)
Q Consensus 125 ~~Gv~risiGvqS~~~~~l~~l~R~--~~~~~~~~~i~~ 161 (391)
++|+++|.-.+-.+-. |. .+.+++.-+++.
T Consensus 221 ~aGa~~vd~tv~GlGe-------r~GN~~lE~vv~~L~~ 252 (325)
T 3eeg_A 221 QNGARQVECTINGIGE-------RAGNTALEEVVMAMEC 252 (325)
T ss_dssp HHTCCEEEEBGGGCCS-------TTCCCBHHHHHHHHHH
T ss_pred HhCCCEEEEecccccc-------cccchhHHHHHHHHHh
Confidence 4799999887765443 32 355665555543
No 341
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=40.99 E-value=60 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=29.8
Q ss_pred hcCCCChhHHHHHhCC----CHHHHHHHHHHHHHCCCeEEc
Q psy2383 331 LKDGFSPNLFFERTGI----NIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~----~~~~~~~~l~~l~~~gl~~~~ 367 (391)
...++...++.+..+. +...+...++.|++.|||...
T Consensus 21 ~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 21 DKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 3567888888888864 566788999999999999864
No 342
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.66 E-value=2.1e+02 Score=25.92 Aligned_cols=57 Identities=12% Similarity=0.011 Sum_probs=38.5
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHH--CCCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSI--IGIN 129 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~--~Gv~ 129 (391)
+.+.|-+|||.+..-..+.+.+++..|+..-. ..++.+++. +.+.+.++.--+ +|..
T Consensus 50 GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~-~~~vpisID----T~~~~V~eaaL~~~~Ga~ 108 (300)
T 3k13_A 50 GALVIDVNMDDGLLDARTEMTTFLNLIMSEPE-IARVPVMID----SSKWEVIEAGLKCLQGKS 108 (300)
T ss_dssp TCSEEEEECCCTTSCHHHHHHHHHHHHHTCHH-HHTSCEEEE----CSCHHHHHHHHHHCSSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEe----CCCHHHHHHHHHhcCCCC
Confidence 57889999998776566789999998873100 013567764 567777777555 5764
No 343
>1vpy_A Protein (hypothetical protein EF0366); TIM alpha/beta barrel fold, structural genomics, joint cente structural genomics, JCSG; 2.52A {Enterococcus faecalis} SCOP: c.1.32.1 PDB: 1ztv_A
Probab=40.55 E-value=95 Score=28.01 Aligned_cols=104 Identities=14% Similarity=0.233 Sum_probs=61.4
Q ss_pred CeeEEEEeCCCCCCC-CHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCC----HHHHHHhHHCCCCEEEEe-cC----
Q psy2383 68 KIHTIFIGGGTPSLI-SDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTFE----IEKFHSYSIIGINRLSIG-IQ---- 136 (391)
Q Consensus 68 ~~~~i~~gGGtps~l-~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~----~e~l~~l~~~Gv~risiG-vq---- 136 (391)
++..|.|.= -|++- +++.++. +..+.+.+ .+..+.+|. ++.-.+ ++..+.|++.|+..|.+- .|
T Consensus 113 kLG~vL~Q~-Ppsf~~~~~~~~~-L~~~~~~~---~~~~~AvE~Rh~sW~~~~~~~~~~~lL~~~~v~~V~~D~~~~~~~ 187 (289)
T 1vpy_A 113 KLFAFLVQF-SGTFGCTKENVAY-LQKIRHWF---KDLPIAIELRNNSWYQPNFVKQMLQFMKENQFSLVIVDEPQIPTN 187 (289)
T ss_dssp CEEEEEEEC-CTTCCSCHHHHHH-HHHHHHHT---TTCCEEEECCCGGGGSTTTHHHHHHHHHHTTCEECEEECCCBTTB
T ss_pred CEEEEEEEc-CCCCCCCHHHHHH-HHHHHHhc---CCCCEEEEecChHHcCcccHHHHHHHHHHcCCEEEEeCcccccCC
Confidence 466677662 23331 3456655 34444443 246899999 566666 799999999999988754 11
Q ss_pred --------CC-CHHHHHHhCCC-------------------CCHHHHHHHHHHHHhh-cccceEeEecC
Q psy2383 137 --------SF-NNKYLNILGRT-------------------HDSKQAKYAIEIAKQY-FNNFNLDLIYA 176 (391)
Q Consensus 137 --------S~-~~~~l~~l~R~-------------------~~~~~~~~~i~~~~~~-~~~v~~dlI~G 176 (391)
|. +-..++..||. .+.++..+..+.+++. -..-.+.++|.
T Consensus 188 ~~P~~~~~T~~~~~yvRlHG~~~~~w~~~~~~~~~~~y~y~Y~~~eL~~wa~ri~~~~~~~~~vyv~Fn 256 (289)
T 1vpy_A 188 PVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVGVIFN 256 (289)
T ss_dssp CCCCCCCCSCTTCEEEEECCSCCTTC--------CTTCBCCCCHHHHHHHHHHHHHHHTSCSEEEEEEC
T ss_pred CCCccccccCCCceEEEeeCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22 33334445553 3556666666666665 22234555554
No 344
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=40.48 E-value=82 Score=22.45 Aligned_cols=54 Identities=7% Similarity=-0.066 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhc-CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeC
Q psy2383 321 IFEFMLNALRLK-DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPT 374 (391)
Q Consensus 321 ~~e~~~~~lr~~-~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT 374 (391)
..+.++..|+-. ..+...++.+..|++-.++...|..|.++|.|.-- --.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 345555556554 45778889999999988899999999999998643 3445554
No 345
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=40.45 E-value=70 Score=28.82 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHhccCcccC-CCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCC
Q psy2383 54 LIDVELSLPIILN-RKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGI 128 (391)
Q Consensus 54 ~~Ei~~~~~~~~~-~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv 128 (391)
.+.++...+++-. .+++.++..| |....|+.++-.++++.+.+. ......+-+-+...+. +-+..+..+++|+
T Consensus 23 ~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~--~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 23 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE--AKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHH--HTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHH--hCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Q ss_pred CEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 129 NRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 129 ~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+-+.+-.-.+.. .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 101 davlv~~P~y~~---------~~~~~l~~~f~~va~a~~lP---i-ilYn~P~ 140 (293)
T 1f6k_A 101 DCLSAVTPFYYK---------FSFPEIKHYYDTIIAETGSN---M-IVYSIPF 140 (293)
T ss_dssp SEEEEECCCSSC---------CCHHHHHHHHHHHHHHHCCC---E-EEEECHH
T ss_pred CEEEECCCCCCC---------CCHHHHHHHHHHHHHhCCCC---E-EEEECcc
No 346
>2jtv_A Protein of unknown function; protein with unknown function RPA3401, northeast structural consortium, NESG, PSI-2, structural genomics; NMR {Rhodopseudomonas palustris}
Probab=40.18 E-value=22 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCeEEc-----CCeEEeCcchHH
Q psy2383 352 ESKLKNAEKLGLLKRN-----NKNIKPTSFGRY 379 (391)
Q Consensus 352 ~~~l~~l~~~gl~~~~-----~~~~~lT~~G~~ 379 (391)
+...+.|++.||++.. ...+.+|++|.-
T Consensus 28 q~~yedLVeLGWlkr~~~d~Kst~YqiTeRGks 60 (65)
T 2jtv_A 28 QKPFEDLVDLGWLKRSSVDSRATHYQITERGTS 60 (65)
T ss_dssp HHHHHHHHHHTSEEEEEECSSCEEEEECHHHHH
T ss_pred cchHHHHHHhcccccccccccceeeehhhcchh
Confidence 5678899999999973 467899999975
No 347
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=40.11 E-value=1.5e+02 Score=29.28 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~~ 125 (391)
.|+-.+.+++... +++.|.+.+ |-..+.|..+.+++..+++.++ ++..+.+=++ .+.-....+..+ +
T Consensus 175 e~~~~~a~~l~~~-------Gad~I~L~D-T~G~~~P~~v~~lv~~l~~~~p--~~i~I~~H~Hnd~GlAvAN~laAv-e 243 (539)
T 1rqb_A 175 EGYVKLAGQLLDM-------GADSIALKD-MAALLKPQPAYDIIKAIKDTYG--QKTQINLHCHSTTGVTEVSLMKAI-E 243 (539)
T ss_dssp HHHHHHHHHHHHT-------TCSEEEEEE-TTCCCCHHHHHHHHHHHHHHHC--TTCCEEEEEBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHc-------CCCEEEeCC-CCCCcCHHHHHHHHHHHHHhcC--CCceEEEEeCCCCChHHHHHHHHH-H
Confidence 4666666666543 467898877 7777889999999999999874 2345666553 332244555555 6
Q ss_pred CCCCEEEEecCC
Q psy2383 126 IGINRLSIGIQS 137 (391)
Q Consensus 126 ~Gv~risiGvqS 137 (391)
+|+++|.-.+-.
T Consensus 244 AGa~~VD~ti~g 255 (539)
T 1rqb_A 244 AGVDVVDTAISS 255 (539)
T ss_dssp TTCSEEEEBCGG
T ss_pred hCCCEEEEeccc
Confidence 899999887754
No 348
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=40.11 E-value=56 Score=29.93 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=63.7
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.+++.|.| ...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 56 Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~--grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~---- 129 (315)
T 3si9_A 56 GINGVSPVGTTGESPTLTHEEHKRIIELCVEQVA--KRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYN---- 129 (315)
T ss_dssp TCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSS----
T ss_pred CCCEEEeCccccCccccCHHHHHHHHHHHHHHhC--CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC----
Confidence 58889988844 556788888888888877643 23445554433222 345566677889999998766553
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 130 ----~-~~~~~l~~~f~~va~a~~lP---i-ilYn~P~ 158 (315)
T 3si9_A 130 ----R-PNQRGLYTHFSSIAKAISIP---I-IIYNIPS 158 (315)
T ss_dssp ----C-CCHHHHHHHHHHHHHHCSSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHcCCCC---E-EEEeCch
Confidence 2 2566777777776665 44 3 5677775
No 349
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=39.91 E-value=1.3e+02 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCeE-EcCCeEEeCcchHHHHH
Q psy2383 350 IIESKLKNAEKLGLLK-RNNKNIKPTSFGRYFLN 382 (391)
Q Consensus 350 ~~~~~l~~l~~~gl~~-~~~~~~~lT~~G~~~~~ 382 (391)
.+...++.|.+.|++. .+++.+.+|+.|+..+.
T Consensus 455 ~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~ 488 (720)
T 2zj8_A 455 KIRNILYFLLENEFIEISLEDKIRPLSLGIRTAK 488 (720)
T ss_dssp HHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHH
Confidence 3567899999999999 66889999999998664
No 350
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=39.90 E-value=32 Score=27.47 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR 366 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~ 366 (391)
++..|.....+...++.+..|.+...+...++.|++.|++..
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 334455556789999999999998888999999999999975
No 351
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=39.88 E-value=1.3e+02 Score=27.14 Aligned_cols=77 Identities=8% Similarity=0.054 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+..+++++... +++.|.+.+ |-....|....++++.+++.++ ++.+.+=+ +-+.-....+..+ +
T Consensus 159 ~~~~~~~~~~~~~-------G~d~i~l~D-T~G~~~P~~~~~lv~~l~~~~~---~~~l~~H~Hn~~Gla~An~laAv-~ 226 (302)
T 2ftp_A 159 RQVAWVARELQQM-------GCYEVSLGD-TIGVGTAGATRRLIEAVASEVP---RERLAGHFHDTYGQALANIYASL-L 226 (302)
T ss_dssp HHHHHHHHHHHHT-------TCSEEEEEE-SSSCCCHHHHHHHHHHHTTTSC---GGGEEEEEBCTTSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHc-------CCCEEEEeC-CCCCcCHHHHHHHHHHHHHhCC---CCeEEEEeCCCccHHHHHHHHHH-H
Confidence 4555555555432 467888874 6667788889999999988753 34566655 2332244455554 6
Q ss_pred CCCCEEEEecC
Q psy2383 126 IGINRLSIGIQ 136 (391)
Q Consensus 126 ~Gv~risiGvq 136 (391)
+|+++|...+-
T Consensus 227 aGa~~vd~tv~ 237 (302)
T 2ftp_A 227 EGIAVFDSSVA 237 (302)
T ss_dssp TTCCEEEEBGG
T ss_pred hCCCEEEeccc
Confidence 89999988775
No 352
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=39.52 E-value=44 Score=23.54 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=30.2
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
...+.+.++++|.+........+++|++.|.+-..
T Consensus 23 ~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp~ 57 (73)
T 2ve8_A 23 RRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPM 57 (73)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCC
T ss_pred CCccHHHHHHHHccChHHHHHHHHHHHHCCcCCcc
Confidence 45789999999999887778889999999999654
No 353
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=39.41 E-value=67 Score=29.22 Aligned_cols=97 Identities=10% Similarity=0.250 Sum_probs=63.6
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.+++.|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 46 Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~--grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~---- 119 (306)
T 1o5k_A 46 GVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD--GKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYN---- 119 (306)
T ss_dssp TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSS----
T ss_pred CCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC--CCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCC----
Confidence 58889998843 555788888899988887643 23455555433322 234555567789999988766543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 120 ----~-~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 148 (306)
T 1o5k_A 120 ----K-PTQEGLYQHYKYISERTDLG---I-VVYNVPG 148 (306)
T ss_dssp ----C-CCHHHHHHHHHHHHTTCSSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhCCCC---E-EEEeCcc
Confidence 2 2667777777776665 44 3 4777775
No 354
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=39.33 E-value=2.3e+02 Score=25.93 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=34.1
Q ss_pred CeeEEEEeC--CCCCCC-------CHHHHHHHHHHH---HHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEE
Q psy2383 68 KIHTIFIGG--GTPSLI-------SDTGLDYLLKNI---KKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRL 131 (391)
Q Consensus 68 ~~~~i~~gG--Gtps~l-------~~~~l~~ll~~i---~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ri 131 (391)
+.+.|-+|| +-|..- ..+.+++++..| ++.+ ++.+++. +.+.+.++.--++|..-|
T Consensus 62 GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISID----T~~~~Va~aAl~aGa~iI 129 (314)
T 3tr9_A 62 GADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVD----TSRPRVMREAVNTGADMI 129 (314)
T ss_dssp TCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEE----CSCHHHHHHHHHHTCCEE
T ss_pred CCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEe----CCCHHHHHHHHHcCCCEE
Confidence 567888988 334322 234566665554 4432 3567774 677888888777787544
No 355
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=39.22 E-value=2.1e+02 Score=25.53 Aligned_cols=71 Identities=15% Similarity=0.319 Sum_probs=47.0
Q ss_pred CeeEEEEeC-----CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEE-EecCCCCHH
Q psy2383 68 KIHTIFIGG-----GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS-IGIQSFNNK 141 (391)
Q Consensus 68 ~~~~i~~gG-----Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~ 141 (391)
+.+-|-+|| |...+-..+++++++..|+..-. .++.+++. |...+.++..-++|++-|+ +.--.+|++
T Consensus 43 GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~--~~v~iSID----T~~~~Va~~al~aGa~iINDVs~g~~d~~ 116 (270)
T 4hb7_A 43 GADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG--FDVKISVD----TFRSEVAEACLKLGVDMINDQWAGLYDHR 116 (270)
T ss_dssp TCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTT--SSSEEEEE----CSCHHHHHHHHHHTCCEEEETTTTSSCTH
T ss_pred CCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhc--CCCeEEEE----CCCHHHHHHHHHhccceeccccccccchh
Confidence 567888998 33444456688999888877633 35677775 6677888887788887665 322244555
Q ss_pred HHH
Q psy2383 142 YLN 144 (391)
Q Consensus 142 ~l~ 144 (391)
.++
T Consensus 117 m~~ 119 (270)
T 4hb7_A 117 MFQ 119 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 356
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=38.95 E-value=1.5e+02 Score=23.79 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHhcCC-----------------CeEEEecccccCCCcccCCCCC-CCCCHHHHHHHHHHHHHHHH
Q psy2383 178 PNQTLSELMLDLNYAIQYSP-----------------PHLSLYSLTIEPNTYFFKYPPL-SMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~-----------------~~is~y~l~~~pgT~l~~~~~~-~~p~~~~~~~~~~~~~~~L~ 239 (391)
++.|.+++....++++.+.+ +-+.+..+++...|.-.+++.+ ....++....+|+...+.|+
T Consensus 35 ~~Dt~~~~~~l~~Ki~~lRif~de~gkmn~Sv~d~~g~iL~VSQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~ 114 (145)
T 1jke_A 35 KDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCR 114 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCCCEECTTSCEEECTTTTTCEEEEEECGGGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhEEeccCCCCCccCCHHHcCCCEEEEEccccccccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 67899999999999998754 1244566776666654455442 34567788899999999999
Q ss_pred HCCC
Q psy2383 240 NNYY 243 (391)
Q Consensus 240 ~~Gy 243 (391)
+.|-
T Consensus 115 ~~~~ 118 (145)
T 1jke_A 115 QQEM 118 (145)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 8753
No 357
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=38.92 E-value=5.9 Score=27.81 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHH
Q psy2383 148 RTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELML 187 (391)
Q Consensus 148 R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~ 187 (391)
|..+.+++.+||+.+++- ..-..+--+||+|..|+++-..
T Consensus 12 r~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 12 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 446889999999999886 5545667799999888776543
No 358
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=38.89 E-value=83 Score=27.12 Aligned_cols=99 Identities=11% Similarity=0.136 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhccc
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNN 168 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~ 168 (391)
.++..+++..+ ..+.+. -.-.+++.++.+.++|++.|.+|.++..+ ++.+.+.++.......
T Consensus 65 ~~i~~i~~~~~----ipv~v~--ggI~~~~~~~~~l~~Gad~V~lg~~~l~~-----------p~~~~~~~~~~g~~~~- 126 (244)
T 1vzw_A 65 ALIAEVAQAMD----IKVELS--GGIRDDDTLAAALATGCTRVNLGTAALET-----------PEWVAKVIAEHGDKIA- 126 (244)
T ss_dssp HHHHHHHHHCS----SEEEEE--SSCCSHHHHHHHHHTTCSEEEECHHHHHC-----------HHHHHHHHHHHGGGEE-
T ss_pred HHHHHHHHhcC----CcEEEE--CCcCCHHHHHHHHHcCCCEEEECchHhhC-----------HHHHHHHHHHcCCcEE-
Confidence 55566666543 344443 33346788999999999999999766422 2334444444432221
Q ss_pred ceEeEe------cCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 169 FNLDLI------YALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 169 v~~dlI------~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+++|.- .|....+. +..+.++.+.+++++.|.+....
T Consensus 127 ~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~~~ 169 (244)
T 1vzw_A 127 VGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCARYVVTDIA 169 (244)
T ss_dssp EEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCCEEEEEC-
T ss_pred EEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCEEEEeccC
Confidence 344432 22211222 34455677778899988766543
No 359
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=38.84 E-value=32 Score=30.16 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE--cCCe--------EEeCcchH
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR--NNKN--------IKPTSFGR 378 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~--~~~~--------~~lT~~G~ 378 (391)
++..|+ ........+.+.+|.+...+...|+.|++.|||.. ..++ ++||+.|.
T Consensus 17 IL~~L~-~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 17 LLSHLT-CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHHT-TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 333344 35577788888899988888899999999999986 3343 78888775
No 360
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=38.63 E-value=94 Score=28.29 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhccCccc---CCCeeEEEEeCCCCCC------CCHHHHHHHHHHHHHhCCCCCCcEEEEeeC-C----
Q psy2383 47 KKYLEALLIDVELSLPIIL---NRKIHTIFIGGGTPSL------ISDTGLDYLLKNIKKLLLFKKNISITLEAN-P---- 112 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~---~~~~~~i~~gGGtps~------l~~~~l~~ll~~i~~~~~~~~~~eit~e~~-p---- 112 (391)
..|++++.+-|+....... .....-|+.+=|+|.- .-..++.+..+.|.+.+++ ....+++..+ .
T Consensus 151 p~~i~a~a~~i~~~l~~~~~~~~~~~~llfs~HG~P~~~~~~gDpY~~~~~~t~~~l~e~l~~-~~~~~~fqSrg~g~~~ 229 (310)
T 2h1v_A 151 PKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGV-SEYAVGWQSEGNTPDP 229 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHTSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTC-SCEEEEEESCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCceEEEecCCCchhhccCCCChHHHHHHHHHHHHHHcCC-CCEEEEEEcCCCCCCC
Confidence 4576766666654322111 0124455555566532 1255677777778777665 3456666654 1
Q ss_pred --CCCCHHHHHHhHHC-CCCEEEEecCCCCHHHHHHh
Q psy2383 113 --STFEIEKFHSYSII-GINRLSIGIQSFNNKYLNIL 146 (391)
Q Consensus 113 --~~l~~e~l~~l~~~-Gv~risiGvqS~~~~~l~~l 146 (391)
.--+++.++.|.+. |+.+|-+=.=+|--+-++.+
T Consensus 230 Wl~P~~~~~l~~l~~~~G~k~v~V~P~~F~sD~lEtl 266 (310)
T 2h1v_A 230 WLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVL 266 (310)
T ss_dssp BSSCBHHHHHHHHHHHHCCSEEEEECTTCCSSCHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCceEEEECCcccccceeeH
Confidence 12257788888888 98887765445544444444
No 361
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=38.44 E-value=69 Score=29.18 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEee--CCCCCCHHHHHHhHH
Q psy2383 48 KYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEA--NPSTFEIEKFHSYSI 125 (391)
Q Consensus 48 ~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~--~p~~l~~e~l~~l~~ 125 (391)
.|+..+.+.+... +++.|++.+ |-..+.|..+.++++.+++.++ +..+.+=+ +.+.-....+..+ +
T Consensus 157 ~~~~~~~~~~~~~-------Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~~~---~~~l~~H~Hnd~Gla~AN~laAv-~ 224 (307)
T 1ydo_A 157 EQVIRLSEALFEF-------GISELSLGD-TIGAANPAQVETVLEALLARFP---ANQIALHFHDTRGTALANMVTAL-Q 224 (307)
T ss_dssp HHHHHHHHHHHHH-------TCSCEEEEC-SSCCCCHHHHHHHHHHHHTTSC---GGGEEEECBGGGSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHhc-------CCCEEEEcC-CCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCCchHHHHHHHHH-H
Confidence 4555666665533 367788886 7777899999999999998763 34555555 2333355566666 5
Q ss_pred CCCCEEEEecC
Q psy2383 126 IGINRLSIGIQ 136 (391)
Q Consensus 126 ~Gv~risiGvq 136 (391)
+|+++|.-.+-
T Consensus 225 aGa~~vd~tv~ 235 (307)
T 1ydo_A 225 MGITVFDGSAG 235 (307)
T ss_dssp HTCCEEEEBGG
T ss_pred hCCCEEEEccc
Confidence 79999987664
No 362
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=38.41 E-value=1.6e+02 Score=23.80 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHhcCC-----------------CeEEEecccccCCCcccCCCCC-CCCCHHHHHHHHHHHHHHHH
Q psy2383 178 PNQTLSELMLDLNYAIQYSP-----------------PHLSLYSLTIEPNTYFFKYPPL-SMPSNDENAVMQDKITSLLK 239 (391)
Q Consensus 178 Pgqt~e~~~~~l~~~~~l~~-----------------~~is~y~l~~~pgT~l~~~~~~-~~p~~~~~~~~~~~~~~~L~ 239 (391)
++.|.+++....++++.+.+ +-+.+..+++...|.-.+++.+ ....++....+|+...+.|+
T Consensus 35 ~~Dt~~~~~~l~~Kil~lRif~De~gkmn~Sv~d~~g~iL~VSQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~ 114 (148)
T 2dbo_A 35 KGDTEEDIEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQFTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIK 114 (148)
T ss_dssp TTCCHHHHHHHHHHHHHCCCBCCSSCSSCBCTTTTTCEEEEEECGGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcEEeccCCCCCcccCHHHcCCCEEEEEeeecccccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 67889999888888888753 2245666776665654555543 34567788899999999998
Q ss_pred HCCC
Q psy2383 240 NNYY 243 (391)
Q Consensus 240 ~~Gy 243 (391)
+.|-
T Consensus 115 ~~g~ 118 (148)
T 2dbo_A 115 ESGL 118 (148)
T ss_dssp TTCS
T ss_pred hcCC
Confidence 8764
No 363
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=38.34 E-value=91 Score=28.14 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=42.4
Q ss_pred CCCChhHHHHHhCCCHHHHHHHHH-HHHHCCCeEEcCCeEEeCcchHHHHH
Q psy2383 333 DGFSPNLFFERTGINIKIIESKLK-NAEKLGLLKRNNKNIKPTSFGRYFLN 382 (391)
Q Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~l~-~l~~~gl~~~~~~~~~lT~~G~~~~~ 382 (391)
..++.+...+..|.+...+...++ .|++.|++......-..|++|+.++.
T Consensus 278 ~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 278 KPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALK 328 (338)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred CCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHHHHhc
Confidence 346688899999998777777777 88999999999988899999998874
No 364
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=38.28 E-value=1.5e+02 Score=26.87 Aligned_cols=85 Identities=8% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCCCHHHHHHhHHCCCCEEEEecCCCCHHHH-HHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 113 STFEIEKFHSYSIIGINRLSIGIQSFNNKYL-NILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 113 ~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l-~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
+..|.-..+.+.++|++-|-+| ++ .+- ..+|.+ .|.+++...++.+.+. .+ +.+|+=+|+ | +++++
T Consensus 28 ~a~D~~sA~l~e~aGf~ai~vs--~~--s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~P-viaD~d~Gy-g-~~~~v 100 (298)
T 3eoo_A 28 GAITAYAAKMAEAVGFKAVYLS--GG--GVAANSLGIPDLGISTMDDVLVDANRITNATNLP-LLVDIDTGW-G-GAFNI 100 (298)
T ss_dssp ECSSHHHHHHHHHHTCSCEEEC--HH--HHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSC-EEEECTTCS-S-SHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEEC--cH--HHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCe-EEEECCCCC-C-CHHHH
Confidence 3457777777888999988886 11 111 235554 4788888888887776 67 899999997 6 89999
Q ss_pred HHHHHHHHhcCCCeEEEec
Q psy2383 186 MLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~ 204 (391)
.++++.+.+.|+.-|.+=.
T Consensus 101 ~~~v~~l~~aGaagv~iED 119 (298)
T 3eoo_A 101 ARTIRSFIKAGVGAVHLED 119 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhCCeEEEECC
Confidence 9999999999998886554
No 365
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=38.23 E-value=82 Score=28.56 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=63.1
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.|+..|.| ...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 45 Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~---- 118 (303)
T 2wkj_A 45 GIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK--GKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYY---- 118 (303)
T ss_dssp TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSS----
T ss_pred CCCEEEECeeccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCC----
Confidence 58889998854 555788888899988887632 34556555433222 234555567789999988766543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
+. +.+.+.+-.+.+.++.+.+-+ ++|..|+
T Consensus 119 ----~~-s~~~l~~~f~~va~a~~~lPi-ilYn~P~ 148 (303)
T 2wkj_A 119 ----PF-SFEEHCDHYRAIIDSADGLPM-VVYNIPA 148 (303)
T ss_dssp ----CC-CHHHHHHHHHHHHHHHTTCCE-EEEECHH
T ss_pred ----CC-CHHHHHHHHHHHHHhCCCCCE-EEEeCcc
Confidence 22 566677666666555111223 5777775
No 366
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=38.14 E-value=2.2e+02 Score=25.46 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh-c-ccceEeEecC-CCCCCHHHHH
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY-F-NNFNLDLIYA-LPNQTLSELM 186 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~-~-~~v~~dlI~G-lPgqt~e~~~ 186 (391)
.-|....+.+.++|++-|.+| .| -.--.+|.. .|.+++...++.+.+. - .-+.+|+=+| + .++++..
T Consensus 36 ayDa~sA~l~e~aG~d~ilvG-dS---l~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY--~s~~~a~ 109 (275)
T 3vav_A 36 CYDASFAALLDRANVDVQLIG-DS---LGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTY--GTPADAF 109 (275)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC-TT---HHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSC--SSHHHHH
T ss_pred CcCHHHHHHHHHcCCCEEEEC-cH---HHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCC--CCHHHHH
Confidence 357888888999999999777 12 222344544 4788888777777666 2 2277888885 6 6899999
Q ss_pred HHHHHHHhcCCCeEEEe
Q psy2383 187 LDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~y 203 (391)
++...+.+.|++-|.+=
T Consensus 110 ~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 110 ASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99888888888877654
No 367
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=38.02 E-value=1.4e+02 Score=26.16 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHhC
Q psy2383 82 ISDTGLDYLLKNIKKLL 98 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~ 98 (391)
-++..++.+.+.+++.+
T Consensus 123 ~~p~~i~~la~~i~~~~ 139 (269)
T 2xvy_A 123 GTTADAEAVAEALVASL 139 (269)
T ss_dssp CSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 34555555555555554
No 368
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=38.02 E-value=2.1e+02 Score=26.08 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=40.4
Q ss_pred CeeEEEEeCC-C-CCCC---CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEE-EecCCCCHH
Q psy2383 68 KIHTIFIGGG-T-PSLI---SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLS-IGIQSFNNK 141 (391)
Q Consensus 68 ~~~~i~~gGG-t-ps~l---~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~ris-iGvqS~~~~ 141 (391)
+.+.|-+||- | |..- ..+.+++++..|+..-. ..++.+++ ++.+.+.++.--++|..-|+ +.-...+++
T Consensus 46 GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~-~~~vpiSI----DT~~~~Va~aAl~aGa~iINDVsg~~~d~~ 120 (314)
T 2vef_A 46 GASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRK-ESDVLISI----DTWKSQVAEAALAAGADLVNDITGLMGDEK 120 (314)
T ss_dssp TCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHH-HCCCEEEE----ECSCHHHHHHHHHTTCCEEEETTTTCSCTT
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh-hCCceEEE----eCCCHHHHHHHHHcCCCEEEECCCCCCChH
Confidence 5788999983 2 3221 12667777666443211 01356676 46778888887778876553 333334555
Q ss_pred HHHH
Q psy2383 142 YLNI 145 (391)
Q Consensus 142 ~l~~ 145 (391)
++..
T Consensus 121 m~~v 124 (314)
T 2vef_A 121 MPHV 124 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 369
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=38.01 E-value=1.4e+02 Score=25.86 Aligned_cols=84 Identities=6% Similarity=-0.003 Sum_probs=46.6
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cc--cceEeEe--cCCCCC-------CHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FN--NFNLDLI--YALPNQ-------TLSE 184 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~--~v~~dlI--~GlPgq-------t~e~ 184 (391)
++.++.++++|++.|.+...+.. . ......+.+++.+..+.++++ +. .+++..- +.+... +.+.
T Consensus 15 ~~~l~~~~~~G~~~vEl~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~ 90 (285)
T 1qtw_A 15 ANAAIRAAEIDATAFALFTKNQR--Q--WRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDA 90 (285)
T ss_dssp HHHHHHHHHTTCSEEECCSSCSS--C--SSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeeCCCCC--c--CcCCCCCHHHHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHHHH
Confidence 56788888888888887432211 0 011224455666666666766 54 1222211 112111 2455
Q ss_pred HHHHHHHHHhcCCCeEEEec
Q psy2383 185 LMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y~ 204 (391)
+++.++.+.++|++.|.+++
T Consensus 91 ~~~~i~~A~~lGa~~v~~~~ 110 (285)
T 1qtw_A 91 FIDEMQRCEQLGLSLLNFHP 110 (285)
T ss_dssp HHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECc
Confidence 66778888888888876543
No 370
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=37.85 E-value=1.3e+02 Score=31.06 Aligned_cols=80 Identities=11% Similarity=0.215 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC--CCCCCHHHHHHhH
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN--PSTFEIEKFHSYS 124 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~--p~~l~~e~l~~l~ 124 (391)
..|+-.+.+++... +++.|++.+ |-.++.|..+.+++..+++.++ ++.+.+=++ .+.-....+..+
T Consensus 260 ~e~~~~~a~~l~~~-------Ga~~I~l~D-T~G~~~P~~v~~lV~~lk~~~p---~~~I~~H~Hnd~GlAvANslaAv- 327 (718)
T 3bg3_A 260 LQYYMGLAEELVRA-------GTHILCIKD-MAGLLKPTACTMLVSSLRDRFP---DLPLHIHTHDTSGAGVAAMLACA- 327 (718)
T ss_dssp HHHHHHHHHHHHHH-------TCSEEEEEC-TTSCCCHHHHHHHHHHHHHHST---TCCEEEECCCTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHc-------CCCEEEEcC-cCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCccHHHHHHHHHH-
Confidence 35666666777543 468899987 7788899999999999999874 345666653 332345566555
Q ss_pred HCCCCEEEEecCCC
Q psy2383 125 IIGINRLSIGIQSF 138 (391)
Q Consensus 125 ~~Gv~risiGvqS~ 138 (391)
++|+++|.-.+-.+
T Consensus 328 eAGa~~VD~ti~Gl 341 (718)
T 3bg3_A 328 QAGADVVDVAADSM 341 (718)
T ss_dssp HTTCSEEEEBCGGG
T ss_pred HhCCCEEEecCccc
Confidence 68999999876543
No 371
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=37.78 E-value=1.3e+02 Score=26.97 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=62.3
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.++..|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 35 Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~--gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~---- 108 (292)
T 2ojp_A 35 GTSAIVSVGTTGESATLNHDEHADVVMMTLDLAD--GRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYN---- 108 (292)
T ss_dssp TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSS----
T ss_pred CCCEEEECccccchhhCCHHHHHHHHHHHHHHhC--CCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCC----
Confidence 57889998844 555788888888888877632 23445554433222 223444456679999988766543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++.+ +-+ ++|..|+
T Consensus 109 ----~-~s~~~l~~~f~~ia~a~~-lPi-ilYn~P~ 137 (292)
T 2ojp_A 109 ----R-PSQEGLYQHFKAIAEHTD-LPQ-ILYNVPS 137 (292)
T ss_dssp ----C-CCHHHHHHHHHHHHTTCS-SCE-EEECCHH
T ss_pred ----C-CCHHHHHHHHHHHHHhcC-CCE-EEEeCcc
Confidence 2 266777777777666521 223 5778886
No 372
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=37.53 E-value=30 Score=32.81 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=51.2
Q ss_pred EEEeeCCCCC----CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC
Q psy2383 106 ITLEANPSTF----EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ 180 (391)
Q Consensus 106 it~e~~p~~l----~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq 180 (391)
+.+.+-|+.- +.+.|+.++++|++||...+++..++. ....+.+.+.++.|++. +. +-+|+ -..
T Consensus 29 LGiSvYp~~~~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~------~~~~~~~~~l~~~a~~~g~~-vi~DV----sp~ 97 (385)
T 1x7f_A 29 LGISLYPEHSTKEKDMAYISAAARHGFSRIFTCLLSVNRPK------EEIVAEFKEIINHAKDNNME-VILDV----APA 97 (385)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHTTTEEEEEEEECCC--------------HHHHHHHHHHHHTTCE-EEEEE----CTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHCCCCEEEccCCccCCCh------HHHHHHHHHHHHHHHHCCCE-EEEEC----CHH
Confidence 4444445532 235788999999999999999875432 23345677888889888 65 66766 233
Q ss_pred CHHHHH---HHHHHHHhcCCCeEEE
Q psy2383 181 TLSELM---LDLNYAIQYSPPHLSL 202 (391)
Q Consensus 181 t~e~~~---~~l~~~~~l~~~~is~ 202 (391)
+.+.+- +++..+.++|++.|.+
T Consensus 98 ~~~~Lg~s~~dl~~f~~lGi~gLRL 122 (385)
T 1x7f_A 98 VFDQLGISYSDLSFFAELGADGIRL 122 (385)
T ss_dssp CC------CCCTHHHHHHTCSEEEE
T ss_pred HHHHcCCCHHHHHHHHHcCCCEEEE
Confidence 333332 3566677777776644
No 373
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=37.30 E-value=2.1e+02 Score=25.59 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=61.6
Q ss_pred CCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHH
Q psy2383 113 STFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELM 186 (391)
Q Consensus 113 ~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~ 186 (391)
..-|.-..+.+.++|++-|-+| |--.--.+|.. .|.+++....+.+.+. .+-+.+|+=||=-+.++++..
T Consensus 23 tayDa~sA~l~e~aG~d~ilvG----dSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~ 98 (275)
T 1o66_A 23 TAYESSFAALMDDAGVEMLLVG----DSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAF 98 (275)
T ss_dssp ECCSHHHHHHHHHTTCCEEEEC----TTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEEC----HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHH
Confidence 3458888888999999988654 22222344544 4788888777777766 333678887765457899998
Q ss_pred HHHHHHHhcCCCeEEEe
Q psy2383 187 LDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~y 203 (391)
++...+++.|.+-|.+=
T Consensus 99 ~na~rl~kaGa~aVklE 115 (275)
T 1o66_A 99 AAAAELMAAGAHMVKLE 115 (275)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHcCCcEEEEC
Confidence 88888888888877654
No 374
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=37.17 E-value=2.2e+02 Score=25.27 Aligned_cols=96 Identities=9% Similarity=0.028 Sum_probs=56.5
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
.++.+.+.|++.|.+.=-|+--. .-|.++-.+.++.+.+.... +|.|.-+.+.++..+-.+.+.++|+|
T Consensus 24 lv~~li~~Gv~gl~v~GttGE~~-------~Ls~~Er~~v~~~~~~~~~g----vi~Gvg~~~t~~ai~la~~A~~~Gad 92 (286)
T 2r91_A 24 HVKNITSKGVDVVFVAGTTGLGP-------ALSLQEKMELTDAATSAARR----VIVQVASLNADEAIALAKYAESRGAE 92 (286)
T ss_dssp HHHHHHHTTCCEEEETSTTTTGG-------GSCHHHHHHHHHHHHHHCSS----EEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHhCC----EEEeeCCCCHHHHHHHHHHHHhcCCC
Confidence 34444557888877643222211 13566666777777766222 77888666777777788888888888
Q ss_pred eEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 199 HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 199 ~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
.+.+-+ |.+.+ .|+.+...+.|..+.+
T Consensus 93 avlv~~-------P~y~~----~~s~~~l~~~f~~va~ 119 (286)
T 2r91_A 93 AVASLP-------PYYFP----RLSERQIAKYFRDLCS 119 (286)
T ss_dssp EEEECC-------SCSST----TCCHHHHHHHHHHHHH
T ss_pred EEEEcC-------CcCCC----CCCHHHHHHHHHHHHH
Confidence 765442 23321 1455666666654433
No 375
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=36.88 E-value=33 Score=32.52 Aligned_cols=119 Identities=10% Similarity=0.183 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCH-----HHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHH
Q psy2383 85 TGLDYLLKNIKKLLLFKKNISITLEANPSTFEI-----EKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAI 159 (391)
Q Consensus 85 ~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~-----e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i 159 (391)
+.+.++++..++. +.++.+.++|..+.. +.++.+++.|++.|-+-- .|+.+....|.+
T Consensus 74 ~~~~~l~~~a~~~-----g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~gLRLD~-Gf~~~eia~ls~----------- 136 (385)
T 1x7f_A 74 AEFKEIINHAKDN-----NMEVILDVAPAVFDQLGISYSDLSFFAELGADGIRLDV-GFDGLTEAKMTN----------- 136 (385)
T ss_dssp HHHHHHHHHHHHT-----TCEEEEEECTTCC------CCCTHHHHHHTCSEEEESS-CCSSHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHC-----CCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCEEEEcC-CCCHHHHHHHhc-----------
Confidence 3566666666654 579999999998854 678899999998666532 123333222321
Q ss_pred HHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCC---eEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 160 EIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP---HLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 160 ~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~---~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
+- .++.+-+..-. | .+.++.+++.+++ -+.++.+.|.|.|-+. .+.|...-+
T Consensus 137 ----n~---~glkIeLNASt-~----~~~l~~l~~~~~n~~~l~acHNFYPr~~TGLs-------------~~~f~~~n~ 191 (385)
T 1x7f_A 137 ----NP---YGLKIELNVSN-D----IAYLENILSHQANKSALIGCHNFYPQKFTGLP-------------YDYFIRCSE 191 (385)
T ss_dssp ----CT---TCCEEEEETTS-C----SSHHHHHTTSSCCGGGEEEECCCBCSTTCSBC-------------HHHHHHHHH
T ss_pred ----CC---CCCEEEEeCcC-C----HHHHHHHHHcCCChHHeEEeeccCCCCCCCCC-------------HHHHHHHHH
Confidence 11 01111112111 2 2345666666665 3567777787777542 234555667
Q ss_pred HHHHCCCce
Q psy2383 237 LLKNNYYKN 245 (391)
Q Consensus 237 ~L~~~Gy~~ 245 (391)
.|++.|..-
T Consensus 192 ~~k~~Gi~t 200 (385)
T 1x7f_A 192 RFKKHGIRS 200 (385)
T ss_dssp HHHHTTCCC
T ss_pred HHHHCCCcE
Confidence 777777653
No 376
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=36.49 E-value=86 Score=28.06 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=62.3
Q ss_pred cEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH-HhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCC
Q psy2383 104 ISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN-ILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQT 181 (391)
Q Consensus 104 ~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~-~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt 181 (391)
.++.+|++| ++|.++...+..-..+.+-.+.=.+-+=+ =++=....+.+..+++.++++ +. |++ || . |.
T Consensus 95 t~lNlEma~---t~emi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIr-VSL-FI-D-pd-- 165 (278)
T 3gk0_A 95 TRMNLECAV---TPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVR-VSL-FI-D-PD-- 165 (278)
T ss_dssp SCEEEEECS---SHHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCE-EEE-EE-C-SC--
T ss_pred CCEEeecCC---CHHHHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCE-EEE-Ee-C-CC--
Confidence 588999887 79999999999999999877652211100 001123567788999999999 76 666 33 2 32
Q ss_pred HHHHHHHHHHHHhcCCCeEEEec
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
.+.++.+.++|.+.|.+|.
T Consensus 166 ----~~qI~aA~~~GAd~IELhT 184 (278)
T 3gk0_A 166 ----EAQIRAAHETGAPVIELHT 184 (278)
T ss_dssp ----HHHHHHHHHHTCSEEEECC
T ss_pred ----HHHHHHHHHhCcCEEEEec
Confidence 3467888999999999885
No 377
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=36.41 E-value=61 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.4
Q ss_pred cCCCChhHHHHHhC----CCHHHHHHHHHHHHHCCCeEEc
Q psy2383 332 KDGFSPNLFFERTG----INIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 332 ~~g~~~~~~~~~~~----~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
..++...++.+.++ .+...+...|+.|++.|+|...
T Consensus 21 ~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 21 HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 45677888877765 4556688999999999999864
No 378
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=36.39 E-value=19 Score=32.84 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=41.3
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|.+-. ++++.+++....++. .+.+|+.. .++.+.+..+++.||+.||+|-=+
T Consensus 227 GaDiImLDn-----~s~~~l~~av~~~~~--------~v~leaSG-GIt~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 227 NVDMILLDN-----MSISEIKKAVDIVNG--------KSVLEVSG-CVNIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp TCSEEEEES-----CCHHHHHHHHHHHTT--------SSEEEEES-SCCTTTHHHHHTTTCSEEECGGGT
T ss_pred CCCEEEECC-----CCHHHHHHHHHhhcC--------ceEEEEEC-CCCHHHHHHHHHcCCCEEEeCccc
Confidence 467777743 467788888877642 24566554 488999999999999999999533
No 379
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=36.36 E-value=2.4e+02 Score=25.42 Aligned_cols=69 Identities=6% Similarity=-0.097 Sum_probs=37.4
Q ss_pred EeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccC-CCcccCCCCCCCCCH-HHHHHHHHHHHHHHHHCCCcee
Q psy2383 171 LDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEP-NTYFFKYPPLSMPSN-DENAVMQDKITSLLKNNYYKNY 246 (391)
Q Consensus 171 ~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p-gT~l~~~~~~~~p~~-~~~~~~~~~~~~~L~~~Gy~~y 246 (391)
.|+|-..-|...+ +.+..+.+.++.-|-++. . |+|-.-+......+. ++..+.+....+.+.++|..+.
T Consensus 124 a~iINdVsg~~d~---~m~~v~a~~~~~vVlmh~----~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~I 194 (294)
T 2dqw_A 124 AHLLNDVTGLRDE---RMVALAARHGVAAVVMHM----PVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQV 194 (294)
T ss_dssp CSEEECSSCSCCH---HHHHHHHHHTCEEEEECC----SSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCE
T ss_pred CCEEEECCCCCCh---HHHHHHHHhCCCEEEEcC----CCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcE
Confidence 4456555555333 456677788876554432 2 544211100001121 4556677778888889999743
No 380
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=36.35 E-value=2.5e+02 Score=25.49 Aligned_cols=76 Identities=7% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
.++.+.+.|++.|.+.=-|+.-.. -|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.++|+
T Consensus 50 lv~~li~~Gv~Gi~v~GtTGE~~~-------Ls~~Er~~v~~~~v~~~~g--rvpViaGvg~~~t~~ai~la~~A~~~Ga 120 (315)
T 3na8_A 50 SIERLIDGGVHAIAPLGSTGEGAY-------LSDPEWDEVVDFTLKTVAH--RVPTIVSVSDLTTAKTVRRAQFAESLGA 120 (315)
T ss_dssp HHHHHHHTTCSEEECSSGGGTGGG-------SCHHHHHHHHHHHHHHHTT--SSCBEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEECccccChhh-------CCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 333445567777765433322111 2455666666666655 22 2345777766677777777777777887
Q ss_pred CeEEEe
Q psy2383 198 PHLSLY 203 (391)
Q Consensus 198 ~~is~y 203 (391)
|.+.+-
T Consensus 121 davlv~ 126 (315)
T 3na8_A 121 EAVMVL 126 (315)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 776553
No 381
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=36.34 E-value=1.1e+02 Score=28.36 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHH-hcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce-ecccccc
Q psy2383 181 TLSELMLDLNYAI-QYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN-YEISAYS 252 (391)
Q Consensus 181 t~e~~~~~l~~~~-~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-ye~~~fa 252 (391)
+.+.+++.++.-+ +|+.|+|.+|.+.- |.. ..| .++ .+ .+.+.|.+.|..+ +.+|||.
T Consensus 133 s~~~i~~~~e~SL~rLg~dyiDl~~lH~-p~~--------~~~-~~e---~~-~aL~~l~~~Gkir~iGvSn~~ 192 (353)
T 3erp_A 133 SRKYLIASLDQSLKRMGLEYVDIFYHHR-PDP--------ETP-LKE---TM-KALDHLVRHGKALYVGISNYP 192 (353)
T ss_dssp CHHHHHHHHHHHHHHHTCSCEEEEEECS-CCT--------TSC-HHH---HH-HHHHHHHHTTSEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEeEEEecC-CCC--------CCC-HHH---HH-HHHHHHHHCCCccEEEecCCC
Confidence 7888888887655 68999999998752 210 011 222 23 3456677788865 5788874
No 382
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=36.23 E-value=1.6e+02 Score=26.31 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=32.6
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCC-CC-CHHHHHHhHHCCCCEEEEec
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPS-TF-EIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~-~l-~~e~l~~l~~~Gv~risiGv 135 (391)
++.|.+.+ |-..+.|....++++.+++.++ ...+.+-++-+ .+ ....+..+ ++|+++|...+
T Consensus 169 ~d~i~l~D-t~G~~~P~~~~~lv~~l~~~~~---~~~l~~H~Hn~~Gla~an~l~Ai-~aG~~~vd~sv 232 (295)
T 1ydn_A 169 CHEVSLGD-TIGRGTPDTVAAMLDAVLAIAP---AHSLAGHYHDTGGRALDNIRVSL-EKGLRVFDASV 232 (295)
T ss_dssp CSEEEEEE-TTSCCCHHHHHHHHHHHHTTSC---GGGEEEEEBCTTSCHHHHHHHHH-HHTCCEEEEBT
T ss_pred CCEEEecC-CCCCcCHHHHHHHHHHHHHhCC---CCeEEEEECCCcchHHHHHHHHH-HhCCCEEEecc
Confidence 55666664 4555666677777777766543 13444444211 12 23333333 45777776655
No 383
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=36.16 E-value=61 Score=28.22 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2383 181 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN 240 (391)
Q Consensus 181 t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~ 240 (391)
..+.+.+.++++.++|+.++++|.++.+ -+++ | .++...++....+.+.+
T Consensus 32 G~~~l~~i~~~c~~~GI~~lTlYaFSte----N~kR-----p-~~Ev~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 32 GAAKIAEMLRWCHEAGIELATVYLLSTE----NLQR-----D-PDELAALIEIITDVVEE 81 (227)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEEETG----GGGS-----C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeccc----ccCC-----C-HHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999733 2332 2 23445555666666654
No 384
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=36.14 E-value=54 Score=29.28 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=10.5
Q ss_pred HHHHHhHHCCCCEEEEe
Q psy2383 118 EKFHSYSIIGINRLSIG 134 (391)
Q Consensus 118 e~l~~l~~~Gv~risiG 134 (391)
+..+.+++.|+..+++.
T Consensus 57 ~~~~~l~~~gl~~~~~h 73 (303)
T 3aal_A 57 AGRQHMQAHGIEEIVVH 73 (303)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHcCCceEEEe
Confidence 34445667788666653
No 385
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=36.10 E-value=58 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=32.5
Q ss_pred CC-hhHHHHHhCCCHHHHHHHHHHHHHCCCeEE--cCC---eEEeCc
Q psy2383 335 FS-PNLFFERTGINIKIIESKLKNAEKLGLLKR--NNK---NIKPTS 375 (391)
Q Consensus 335 ~~-~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~--~~~---~~~lT~ 375 (391)
+. -..+.+.||++-..++..|..|+..|||+. ..+ ..++++
T Consensus 28 LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 28 LPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 53 457899999998889999999999999998 543 555543
No 386
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=35.81 E-value=8 Score=32.83 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcch
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFG 377 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G 377 (391)
+..+.++...|.+.+.+...+..|.++|++..+++++.+.+.-
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d~~ 207 (213)
T 1o5l_A 165 VTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLKNP 207 (213)
T ss_dssp -------------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEechH
Confidence 4566677777887777888999999999999998888887643
No 387
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=35.76 E-value=1.1e+02 Score=28.29 Aligned_cols=78 Identities=9% Similarity=-0.007 Sum_probs=52.2
Q ss_pred CHHHHHHhHHC-CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC------------C
Q psy2383 116 EIEKFHSYSII-GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ------------T 181 (391)
Q Consensus 116 ~~e~l~~l~~~-Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq------------t 181 (391)
+++.|+.++++ |++.|.+.+.... .+...+.+++.+..+.+.++ +. +.+ +..+|.. .
T Consensus 23 ~~~~L~~i~~~~G~~~ve~~~~~~~------~g~~~~~~~~~~~~~~l~~~GL~-i~~--~~~~~~~~~~~~~~~~r~~~ 93 (367)
T 1tz9_A 23 DAIPLKHIRQIPGITGVVGTLLNKL------PGDVWTVAEIQALKQSVEQEGLA-LLG--IESVAIHDAIKAGTDQRDHY 93 (367)
T ss_dssp CCSCHHHHTTSTTCCEEEECCSSSC------TTCCCCHHHHHHHHHHHHHTTCE-EEE--ECSCCCCHHHHHTCSTHHHH
T ss_pred ChHHHHHHhhcCCCCeEEecCCCCC------CCCCCCHHHHHHHHHHHHHCCCe-EEE--EecCCCcHHHhcCCcCHHHH
Confidence 45679999999 9999998763221 12334556677777777777 54 432 4444422 2
Q ss_pred HHHHHHHHHHHHhcCCCeEEE
Q psy2383 182 LSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~ 202 (391)
.+.+.+.++.+.++|++.|.+
T Consensus 94 i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 94 IDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 456678888999999998855
No 388
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=35.63 E-value=29 Score=27.52 Aligned_cols=72 Identities=3% Similarity=-0.205 Sum_probs=41.7
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhc
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQY 195 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l 195 (391)
++.++..++.+.+-|.+..-+ .++...+.+.++.+++. ..++.+ ++-|-|--..+++.++-+.+.++
T Consensus 44 e~~v~~a~~~~~d~v~lS~~~-----------~~~~~~~~~~i~~l~~~g~~~i~v-~vGG~~~~~~~~~~~~~~~~~~~ 111 (137)
T 1ccw_A 44 ELFIKAAIETKADAILVSSLY-----------GQGEIDCKGLRQKCDEAGLEGILL-YVGGNIVVGKQHWPDVEKRFKDM 111 (137)
T ss_dssp HHHHHHHHHHTCSEEEEEECS-----------STHHHHHTTHHHHHHHTTCTTCEE-EEEESCSSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEEecC-----------cCcHHHHHHHHHHHHhcCCCCCEE-EEECCCcCchHhhhhhHHHHHHC
Confidence 556666777777766665433 23344566778888887 543444 34443311122444555677888
Q ss_pred CCCeE
Q psy2383 196 SPPHL 200 (391)
Q Consensus 196 ~~~~i 200 (391)
|++.+
T Consensus 112 G~d~~ 116 (137)
T 1ccw_A 112 GYDRV 116 (137)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 98865
No 389
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=35.35 E-value=29 Score=30.08 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhccc
Q psy2383 89 YLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNN 168 (391)
Q Consensus 89 ~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~ 168 (391)
.++..+++..+ ..+.+ +-.-.+++.++.+.++|++.|.+|.....+ .+.+.+.++.+.+...
T Consensus 64 ~~i~~i~~~~~----ipv~v--~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~-----------p~~~~~~~~~~g~~~~- 125 (244)
T 2y88_A 64 ELLAEVVGKLD----VQVEL--SGGIRDDESLAAALATGCARVNVGTAALEN-----------PQWCARVIGEHGDQVA- 125 (244)
T ss_dssp HHHHHHHHHCS----SEEEE--ESSCCSHHHHHHHHHTTCSEEEECHHHHHC-----------HHHHHHHHHHHGGGEE-
T ss_pred HHHHHHHHhcC----CcEEE--ECCCCCHHHHHHHHHcCCCEEEECchHhhC-----------hHHHHHHHHHcCCCEE-
Confidence 55566666543 34444 333347788999999999999999765321 2344445544433211
Q ss_pred ceEeEe----------cCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 169 FNLDLI----------YALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 169 v~~dlI----------~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+++|.- -|....+. +..+.++.+.+.+++.|.+.+.+
T Consensus 126 ~~ld~~~~~~~~~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~~~ 172 (244)
T 2y88_A 126 VGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDIT 172 (244)
T ss_dssp EEEEEEEETTEEEEEEGGGTEEEE-EHHHHHHHHHHTTCCCEEEEETT
T ss_pred EEEeccccCCCCEEEECCccCCCC-CHHHHHHHHHhCCCCEEEEEecC
Confidence 334432 12211122 44556677788899988766543
No 390
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=35.23 E-value=1.6e+02 Score=27.18 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHH-hcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce-ecccccc
Q psy2383 179 NQTLSELMLDLNYAI-QYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN-YEISAYS 252 (391)
Q Consensus 179 gqt~e~~~~~l~~~~-~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-ye~~~fa 252 (391)
..+.+.+++.++.-+ +|+.|+|.+|.+.- |.. ..+ .+ +.+. +.+.|.+.|..+ +.+|||.
T Consensus 114 ~~~~~~i~~~~e~SL~rLg~dyiDl~~lH~-p~~--------~~~-~~---e~~~-aL~~l~~~Gkir~iGvSn~~ 175 (360)
T 2bp1_A 114 SLKPDSVRSQLETSLKRLQCPQVDLFYLHA-PDH--------GTP-VE---ETLH-ACQRLHQEGKFVELGLSNYA 175 (360)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSCEEEEEECS-CCT--------TSC-HH---HHHH-HHHHHHHTTSEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEeEEEecC-CCC--------CCC-HH---HHHH-HHHHHHHCCCccEEEEeCCC
Confidence 457899999887666 68999999997652 211 011 22 2332 456677788765 5788885
No 391
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=35.13 E-value=1.2e+02 Score=26.15 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=62.9
Q ss_pred eeEEEEeCCCC--CC-CCHHHHHHHHHHHHHhCCCCCCcEEEEee-CCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHH
Q psy2383 69 IHTIFIGGGTP--SL-ISDTGLDYLLKNIKKLLLFKKNISITLEA-NPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLN 144 (391)
Q Consensus 69 ~~~i~~gGGtp--s~-l~~~~l~~ll~~i~~~~~~~~~~eit~e~-~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~ 144 (391)
.-++-+.+|.+ ++ +.+ .+++.+++.++......+.+-+ +| ...++.+.++|++.|++..++.+
T Consensus 33 ~~h~DVmDg~Fvpn~~~G~----~~v~~ir~~~~~~~~~dvhLmv~~p----~~~i~~~~~aGad~itvH~Ea~~----- 99 (228)
T 3ovp_A 33 YLHLDVMDGHFVPNITFGH----PVVESLRKQLGQDPFFDMHMMVSKP----EQWVKPMAVAGANQYTFHLEATE----- 99 (228)
T ss_dssp CEEEEEEBSSSSSCBCBCH----HHHHHHHHHHCSSSCEEEEEECSCG----GGGHHHHHHHTCSEEEEEGGGCS-----
T ss_pred EEEEEecCCCcCcccccCH----HHHHHHHHhhCCCCcEEEEEEeCCH----HHHHHHHHHcCCCEEEEccCCch-----
Confidence 45666777763 32 344 3455666653111123444443 34 34788899999999999988753
Q ss_pred HhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEecccccCCC
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNT 211 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT 211 (391)
+..+.++.++++ .. +.+.+- |+...+.+. .+.+ .+|.|- -.++.||.
T Consensus 100 ---------~~~~~i~~i~~~G~k-~gval~---p~t~~e~l~----~~l~-~~D~Vl--~msv~pGf 147 (228)
T 3ovp_A 100 ---------NPGALIKDIRENGMK-VGLAIK---PGTSVEYLA----PWAN-QIDMAL--VMTVEPGF 147 (228)
T ss_dssp ---------CHHHHHHHHHHTTCE-EEEEEC---TTSCGGGTG----GGGG-GCSEEE--EESSCTTT
T ss_pred ---------hHHHHHHHHHHcCCC-EEEEEc---CCCCHHHHH----HHhc-cCCeEE--EeeecCCC
Confidence 245677777887 54 555543 444443332 2222 267653 35567775
No 392
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=35.11 E-value=50 Score=24.10 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC---HHHHHHhHHCCCCEEEEecCC
Q psy2383 71 TIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE---IEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 71 ~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~---~e~l~~l~~~Gv~risiGvqS 137 (391)
.+|++| .|- +.+.|...+..+ ..-.++..+.+.++.+.-- -+.++.++++|+.+|+|-.+.
T Consensus 31 ~i~~~~-~~v--~~~~L~~~l~~~---~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~~v~l~t~~ 94 (99)
T 2pfu_A 31 SMFIGN-DPV--TDETMITALNAL---TEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEE 94 (99)
T ss_dssp EEEETT-EEE--CSSSHHHHHHHH---SSSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTTCC
T ss_pred CEEECC-Eec--CHHHHHHHHHHH---HhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 467754 442 334454444433 2224456788888765332 357788899999999987664
No 393
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=34.95 E-value=1.6e+02 Score=22.78 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC
Q psy2383 47 KKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII 126 (391)
Q Consensus 47 ~~y~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~ 126 (391)
+.|..+.+++|-.+....+ ... -+..++-...+..++..++..|-+.. +++.++ ....+.+|....||+.
T Consensus 13 k~~q~~~~~~i~~fL~~~~---~~~-~is~k~L~~Pt~kdF~~if~fL~~~i--dp~~~~----~~~~~eeev~~~lK~L 82 (120)
T 2igp_A 13 KAFIQQCIRQLCEFLTENG---YAH-NVSMKSLQAPSVKDFLKIFTFLYGFL--CPSYEL----PDTKFEEEVPRIFKDL 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CSS-CCCTTTTSSCCHHHHHHHHHHHHTTT--CTTCCC----CCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC---CCC-CCCccccCCCCHHHHHHHHHHHHHhc--CCCCcc----CCCChHHHHHHHHHHc
Confidence 4588888888876543221 110 02233323345677888888887753 444433 2456789999999999
Q ss_pred CCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 127 GINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 127 Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
|.-- ..+...|...|-.|+.-.+.-++.++.+.
T Consensus 83 ~YP~------~isKS~L~a~g~pHsWp~~L~~L~WLvel 115 (120)
T 2igp_A 83 GYPF------ALSKSSMYTVGAPHTWPHIVAALVWLIDC 115 (120)
T ss_dssp TCCS------CCCHHHHHTTTSTTTHHHHHHHHHHHHHH
T ss_pred CCCc------eeCHHHhcCCCCCccHHHHHHHHHHHHHH
Confidence 9754 38899999999999999999999998876
No 394
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=34.83 E-value=2.5e+02 Score=25.05 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=59.0
Q ss_pred CCCHHHH----HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHH
Q psy2383 114 TFEIEKF----HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDL 189 (391)
Q Consensus 114 ~l~~e~l----~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l 189 (391)
++|.+.+ +.+.+.|++.|.+.=-|+--. .-|.++-.+.++.+.+.... +|.|.-+.+.++..+-.
T Consensus 16 ~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~-------~Ls~eEr~~v~~~~~~~~~g----ViaGvg~~~t~~ai~la 84 (288)
T 2nuw_A 16 KVNVDALKTHAKNLLEKGIDAIFVNGTTGLGP-------ALSKDEKRQNLNALYDVTHK----LIFQVGSLNLNDVMELV 84 (288)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEETSTTTTGG-------GSCHHHHHHHHHHHTTTCSC----EEEECCCSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHhCC----eEEeeCCCCHHHHHHHH
Confidence 4555444 345557888877643222211 13556666777776665222 77888666777777888
Q ss_pred HHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 190 NYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 190 ~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
+.+.+.|+|.+.+-+ |.+.+ .|+.+...+.|..+.+
T Consensus 85 ~~A~~~Gadavlv~~-------P~y~~----~~s~~~l~~~f~~va~ 120 (288)
T 2nuw_A 85 KFSNEMDILGVSSHS-------PYYFP----RLPEKFLAKYYEEIAR 120 (288)
T ss_dssp HHHHTSCCSEEEECC-------CCSSC----SCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcC-------CcCCC----CCCHHHHHHHHHHHHH
Confidence 888888888775442 23321 0456666666654433
No 395
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=34.82 E-value=51 Score=31.40 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=72.0
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHH--h-CCCCCHHHHHHHHHHHHhh-cccceEeEecC----CCCC--------
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNI--L-GRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA----LPNQ-------- 180 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~--l-~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G----lPgq-------- 180 (391)
.+.++.|+++|+|.|.+.+ -.+|.--.- . .-..+.+.+.+++++++++ +. |-+||-|+ =|+.
T Consensus 51 ~d~~~ilk~~G~N~VRlrv-wv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLk-VlldfHysD~WadPg~Q~~P~aW~ 128 (399)
T 1ur4_A 51 QDIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMK-LLADFHYSDFWADPAKQKAPKAWA 128 (399)
T ss_dssp CCHHHHHHHTTCCEEEEEE-CSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCE-EEEEECSSSSCCSSSCCCCCGGGT
T ss_pred chHHHHHHHCCCCEEEEee-ecCCcccccCccCCCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCccCCcccccCccccc
Confidence 4679999999999888766 233321000 0 0115788999999999999 76 88988664 1442
Q ss_pred --CHHHHH--------HHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCceecccc
Q psy2383 181 --TLSELM--------LDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250 (391)
Q Consensus 181 --t~e~~~--------~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 250 (391)
+.+++. +.++.+.+.+.. +.++..--+...-+. .....+...+++..+.+..++..-..--+.+
T Consensus 129 ~~~~~~l~~~~~~yt~~~l~~l~~~g~~-~~~vqvGNEi~~g~~-----~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih 202 (399)
T 1ur4_A 129 NLNFEDKKTALYQYTKQSLKAMKAAGID-IGMVQVGNETNGGLA-----GETDWAKMSQLFNAGSQAVRETDSNILVALH 202 (399)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEESSSCSSCBT-----TBCCHHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCC-CcEEEEccccccccC-----CcccHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 444333 234444444432 333332222111110 1234566777787777777766533222344
Q ss_pred cccC
Q psy2383 251 YSKT 254 (391)
Q Consensus 251 fa~~ 254 (391)
.+.+
T Consensus 203 ~~~~ 206 (399)
T 1ur4_A 203 FTNP 206 (399)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 4444
No 396
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=34.80 E-value=2.5e+02 Score=25.09 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=38.7
Q ss_pred HhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEE
Q psy2383 122 SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLS 201 (391)
Q Consensus 122 ~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is 201 (391)
.+.+.|++.|.+.=-|+--. .-|.++-.+.++.+.+.... +|.|.-+.+.++..+-.+.+.+.|+|.+.
T Consensus 28 ~li~~Gv~gl~~~GttGE~~-------~Ls~eEr~~v~~~~~~~~~g----viaGvg~~~t~~ai~la~~A~~~Gadavl 96 (293)
T 1w3i_A 28 NLIRKGIDKLFVNGTTGLGP-------SLSPEEKLENLKAVYDVTNK----IIFQVGGLNLDDAIRLAKLSKDFDIVGIA 96 (293)
T ss_dssp HHHHTTCCEEEESSTTTTGG-------GSCHHHHHHHHHHHHTTCSC----EEEECCCSCHHHHHHHHHHGGGSCCSEEE
T ss_pred HHHHcCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHcCC----EEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 34456777666543222111 12445555666666555221 66676555666666666677777777664
Q ss_pred Ee
Q psy2383 202 LY 203 (391)
Q Consensus 202 ~y 203 (391)
+-
T Consensus 97 v~ 98 (293)
T 1w3i_A 97 SY 98 (293)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 397
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=34.72 E-value=89 Score=26.20 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~ 367 (391)
++..|. ..++...++.+..|.+...+...++.|++.|++...
T Consensus 25 IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 25 ILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344455 467899999999999988899999999999999764
No 398
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=34.63 E-value=2.5e+02 Score=25.06 Aligned_cols=99 Identities=4% Similarity=-0.004 Sum_probs=62.0
Q ss_pred HHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCC
Q psy2383 119 KFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSP 197 (391)
Q Consensus 119 ~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~ 197 (391)
.++.+.+.|++.|.+.=-|+--.. -|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.++|+
T Consensus 28 lv~~li~~Gv~gl~v~GttGE~~~-------Lt~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~a~~~Ga 98 (292)
T 3daq_A 28 HVNFLLENNAQAIIVNGTTAESPT-------LTTDEKELILKTVIDLVDK--RVPVIAGTGTNDTEKSIQASIQAKALGA 98 (292)
T ss_dssp HHHHHHHTTCCEEEESSGGGTGGG-------SCHHHHHHHHHHHHHHHTT--SSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEECcccccccc-------CCHHHHHHHHHHHHHHhCC--CCcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence 444566678988877543332222 2566666677766665 22 2446888866788888888888888998
Q ss_pred CeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2383 198 PHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLL 238 (391)
Q Consensus 198 ~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L 238 (391)
|.+.+-+ |.+. .|+.+...+.|..+.+..
T Consensus 99 davlv~~-------P~y~-----~~~~~~l~~~f~~ia~a~ 127 (292)
T 3daq_A 99 DAIMLIT-------PYYN-----KTNQRGLVKHFEAIADAV 127 (292)
T ss_dssp SEEEEEC-------CCSS-----CCCHHHHHHHHHHHHHHH
T ss_pred CEEEECC-------CCCC-----CCCHHHHHHHHHHHHHhC
Confidence 8876543 2222 245666666666555543
No 399
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=34.50 E-value=1.7e+02 Score=25.96 Aligned_cols=85 Identities=11% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHH
Q psy2383 113 STFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELM 186 (391)
Q Consensus 113 ~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~ 186 (391)
..-|.-..+.+.++|++-|-+|= |.. --.+|.. .|.+++....+.+.+. .+-+.+|+=||--+ ++++..
T Consensus 23 tayD~~sA~l~e~aG~d~ilvGd-sl~---~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~-~~~~a~ 97 (264)
T 1m3u_A 23 TAYDYSFAKLFADEGLNVMLVGD-SLG---MTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA-TPEQAF 97 (264)
T ss_dssp ECCSHHHHHHHHHHTCCEEEECT-THH---HHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS-SHHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECH-HHH---HHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcC-CHHHHH
Confidence 34578888889999999998862 222 1234433 4778877777776665 33367998776444 888888
Q ss_pred HHHHHHHhcCCCeEEE
Q psy2383 187 LDLNYAIQYSPPHLSL 202 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~ 202 (391)
++...+.+.|.+-|.+
T Consensus 98 ~~a~rl~kaGa~aVkl 113 (264)
T 1m3u_A 98 ENAATVMRAGANMVKI 113 (264)
T ss_dssp HHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8888888888876654
No 400
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=34.42 E-value=1.2e+02 Score=29.19 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=46.0
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC------CHHH----HHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF------EIEK----FHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l------~~e~----l~~l~~~Gv~risiGvqS 137 (391)
+.+.||+-.|.| +.++++++.+.++..++. .-+.....| ++ +++. .+.|.++|++++++++..
T Consensus 283 GAD~if~E~~~~---~~eei~~f~~~v~~~~P~---~~l~~~~sP-sfnw~~~~~~~~~~~f~~eL~~lGv~~v~~~la~ 355 (439)
T 3i4e_A 283 YADLIWCETGKP---DLEYAKKFAEAIHKQFPG---KLLSYNCSP-SFNWKKNLDDATIAKFQKELGAMGYKFQFITLAG 355 (439)
T ss_dssp TCSEEEECCSSC---CHHHHHHHHHHHHHHSTT---CEEEEECCS-SSCHHHHSCHHHHHTHHHHHHHHTCCEEEETTHH
T ss_pred hCCEEEecCCCC---CHHHHHHHHHHhcccCCc---eEEeeCCCC-CCcCcccCCHHHHHHHHHHHHHcCCeEEEeChHH
Confidence 688999855544 678999999999876653 123334456 34 3444 557899999999999866
Q ss_pred CCH
Q psy2383 138 FNN 140 (391)
Q Consensus 138 ~~~ 140 (391)
+.-
T Consensus 356 ~ra 358 (439)
T 3i4e_A 356 FHA 358 (439)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 401
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=34.38 E-value=2.3e+02 Score=24.59 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=55.3
Q ss_pred EEeeCCCC-CCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHH
Q psy2383 107 TLEANPST-FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 107 t~e~~p~~-l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~ 185 (391)
-.-..|+. .+.+.++.+.++|.+-|.+|+ | .+.+.+.+.+.++.+++. .+-+-||-+.+.+=
T Consensus 12 it~gDP~~~~t~~~~~~l~~~GaD~IelG~-S----------~g~t~~~~~~~v~~ir~~--~~Pivl~~y~~n~i---- 74 (234)
T 2f6u_A 12 ITKLDPDRTNTDEIIKAVADSGTDAVMISG-T----------QNVTYEKARTLIEKVSQY--GLPIVVEPSDPSNV---- 74 (234)
T ss_dssp EEEECTTSCCCHHHHHHHHTTTCSEEEECC-C----------TTCCHHHHHHHHHHHTTS--CCCEEECCSSCCCC----
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECC-C----------CCCCHHHHHHHHHHhcCC--CCCEEEecCCcchh----
Confidence 33457765 588999999999999999999 2 567889999999999884 23355555554211
Q ss_pred HHHHHHHHhcCCCeEEEecccccC
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
+.++|.+-+=.|-+++
T Consensus 75 --------~~gvDg~iipdLp~ee 90 (234)
T 2f6u_A 75 --------VYDVDYLFVPTVLNSA 90 (234)
T ss_dssp --------CCCSSEEEEEEETTBS
T ss_pred --------hcCCCEEEEcccCCCC
Confidence 6678877555554443
No 402
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=34.33 E-value=1.1e+02 Score=27.80 Aligned_cols=85 Identities=11% Similarity=-0.069 Sum_probs=60.0
Q ss_pred CCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHH
Q psy2383 113 STFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELM 186 (391)
Q Consensus 113 ~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~ 186 (391)
+..|.-..+.+.++|+.-|-+|=-|.. ..+|.+ .|.+++...++.+.+. .+ |.+|+=+|+ | +.++..
T Consensus 25 ~a~D~~sA~~~~~aG~~ai~vsg~~~a----~~lG~pD~~~vt~~em~~~~~~I~~~~~~P-viaD~d~Gy-g-~~~~v~ 97 (295)
T 1s2w_A 25 EAHNGLSARIVQEAGFKGIWGSGLSVS----AQLGVRDSNEASWTQVVEVLEFMSDASDVP-ILLDADTGY-G-NFNNAR 97 (295)
T ss_dssp EECSHHHHHHHHHHTCSCEEECCHHHH----HTC---------CHHHHHHHHHHHHTCSSC-EEEECCSSC-S-SHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEeChHHHH----HhCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEecCCCCC-C-CHHHHH
Confidence 345777778888899998888711111 123333 4777888888888777 77 999999996 5 578899
Q ss_pred HHHHHHHhcCCCeEEEec
Q psy2383 187 LDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~y~ 204 (391)
++++.+.+.|+.-|.+=.
T Consensus 98 ~~v~~l~~aGaagv~iED 115 (295)
T 1s2w_A 98 RLVRKLEDRGVAGACLED 115 (295)
T ss_dssp HHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHcCCcEEEECC
Confidence 999999999998886544
No 403
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=34.14 E-value=70 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEecccccC
Q psy2383 180 QTLSELMLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 180 qt~e~~~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
+..+.+.+.++++.++|+.++++|.++.+-
T Consensus 52 ~G~~~~~~iv~~c~~lGI~~lTlYaFStEN 81 (256)
T 4h8e_A 52 EGMQTIKKITRIASDIGVKYLTLYAFSTEN 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEchhh
Confidence 346788899999999999999999998553
No 404
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=33.99 E-value=2e+02 Score=25.35 Aligned_cols=76 Identities=8% Similarity=0.031 Sum_probs=47.4
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEe----cCCCCC-------CHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLI----YALPNQ-------TLSE 184 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI----~GlPgq-------t~e~ 184 (391)
++ ++.++++|++.|.+......+ ....++.+..+.++++ +. +....- +.+.+. +.+.
T Consensus 40 ~~-l~~~~~~G~~~vEl~~~~~~~---------~~~~~~~~l~~~l~~~gl~-i~~~~~~~~~~~l~~~d~~~r~~~~~~ 108 (309)
T 2hk0_A 40 PY-IEKVAKLGFDIIEVAAHHINE---------YSDAELATIRKSAKDNGII-LTAGIGPSKTKNLSSEDAAVRAAGKAF 108 (309)
T ss_dssp HH-HHHHHHTTCSEEEEEHHHHTT---------SCHHHHHHHHHHHHHTTCE-EEEECCCCSSSCSSCSCHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCEEEeccCCccc---------cchhhHHHHHHHHHHcCCe-EEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 45 999999999999997642111 1124555566666676 54 444111 112221 2367
Q ss_pred HHHHHHHHHhcCCCeEEEe
Q psy2383 185 LMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 185 ~~~~l~~~~~l~~~~is~y 203 (391)
+.+.++.+.++|++.|...
T Consensus 109 ~~~~i~~A~~lG~~~v~~~ 127 (309)
T 2hk0_A 109 FERTLSNVAKLDIHTIGGA 127 (309)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEee
Confidence 7888999999999988643
No 405
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=33.79 E-value=1.4e+02 Score=26.95 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHH-hcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCCce-ecccccc
Q psy2383 180 QTLSELMLDLNYAI-QYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKN-YEISAYS 252 (391)
Q Consensus 180 qt~e~~~~~l~~~~-~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-ye~~~fa 252 (391)
-+.+.+++.++.-+ +|+.|+|.+|.+.- |.. ..| .++ .+ .+.+.|.+.|..+ +.+|||.
T Consensus 97 ~s~~~i~~~~e~SL~rLg~dyiDl~~lH~-p~~--------~~~-~~e---~~-~al~~l~~~Gkir~iGvSn~~ 157 (327)
T 3eau_A 97 LSRKHIIEGLKASLERLQLEYVDVVFANR-PDP--------NTP-MEE---TV-RAMTHVINQGMAMYWGTSRWS 157 (327)
T ss_dssp SSHHHHHHHHHHHHHHHTCSCEEEEEESS-CCT--------TSC-HHH---HH-HHHHHHHHTTSEEEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccceEEEeC-CCC--------CCC-HHH---HH-HHHHHHHHcCCeeEEeecCCC
Confidence 36788888887655 68999999997652 211 011 222 22 3446677788765 5888885
No 406
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=33.79 E-value=2.6e+02 Score=25.09 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCHHHH----HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEKF----HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l----~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
++|.+.+ +.+.+.|++.|.+.=-|+--. ..|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 33 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~-------~Ls~~Er~~v~~~~~~~~~g--rvpviaGvg~~st~~ai~l 103 (304)
T 3cpr_A 33 DIDIAAGREVAAYLVDKGLDSLVLAGTTGESP-------TTTAAEKLELLKAVREEVGD--RAKLIAGVGTNNTRTSVEL 103 (304)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEESSTTTTTT-------TSCHHHHHHHHHHHHHHHTT--TSEEEEECCCSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHhCC--CCcEEecCCCCCHHHHHHH
Confidence 4555443 344556888776643221111 13555556666666655 22 2346788867777888888
Q ss_pred HHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 189 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 189 l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
.+.+.++|+|.+.+-+ |++. .|+.+...+.|..+.+
T Consensus 104 a~~A~~~Gadavlv~~-------P~y~-----~~~~~~l~~~f~~ia~ 139 (304)
T 3cpr_A 104 AEAAASAGADGLLVVT-------PYYS-----KPSQEGLLAHFGAIAA 139 (304)
T ss_dssp HHHHHHTTCSEEEEEC-------CCSS-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEECC-------CCCC-----CCCHHHHHHHHHHHHH
Confidence 8888888888775543 2222 2455666666654433
No 407
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.79 E-value=76 Score=27.18 Aligned_cols=89 Identities=10% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeC-CCCC--CHHHHHHhHHCCC---CEEEEecCCCCH
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEAN-PSTF--EIEKFHSYSIIGI---NRLSIGIQSFNN 140 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~-p~~l--~~e~l~~l~~~Gv---~risiGvqS~~~ 140 (391)
.+++.+|+|-.+| + +++++.+++.-+ +.+-+|..+. ..++ -.+.++.|++.|. ..|-+|=..+++
T Consensus 119 ~G~~Vi~LG~~vp----~---e~iv~~~~~~~~--d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~ 189 (215)
T 3ezx_A 119 NGFQIVDLGVDVL----N---ENVVEEAAKHKG--EKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSD 189 (215)
T ss_dssp TSCEEEECCSSCC----H---HHHHHHHHHTTT--SCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCH
T ss_pred CCCeEEEcCCCCC----H---HHHHHHHHHcCC--CEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCH
Confidence 3678899887654 3 466666666421 2233411331 1122 3678889999997 368888888999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHh
Q psy2383 141 KYLNILGRTHDSKQAKYAIEIAKQ 164 (391)
Q Consensus 141 ~~l~~l~R~~~~~~~~~~i~~~~~ 164 (391)
+.-+.+|-..-..+..++++.+++
T Consensus 190 ~~a~~iGad~~~~dA~~av~~a~~ 213 (215)
T 3ezx_A 190 KWIEEIGADATAENAAEAAKVALE 213 (215)
T ss_dssp HHHHHHTCCBCCSSHHHHHHHHHH
T ss_pred HHHHHhCCeEEECCHHHHHHHHHH
Confidence 999999877667778888888775
No 408
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=33.70 E-value=2.4e+02 Score=24.65 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=49.5
Q ss_pred HHHHHHhHHCCCCEEEEecCCCC-----HHHHH----HhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHH--H
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFN-----NKYLN----ILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSE--L 185 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~-----~~~l~----~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~--~ 185 (391)
.+.++.|.++|++-|.+|+--.| |.+.+ .+..+.+.+.+.+.++.+++.++++-+-+| +... .... +
T Consensus 34 ~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n-~v~~~g~ 111 (262)
T 2ekc_A 34 LKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYN-PIFRIGL 111 (262)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHH-HHHHHCH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCc-HHHHhhH
Confidence 45677788889999999886544 22332 355667777777778777765422334333 2110 0111 1
Q ss_pred HHHHHHHHhcCCCeEEEecc
Q psy2383 186 MLDLNYAIQYSPPHLSLYSL 205 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l 205 (391)
.+.++.+.+.|++.+.+-.+
T Consensus 112 ~~f~~~~~~aG~dgvii~dl 131 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDL 131 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTC
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 34556666667766555433
No 409
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=33.67 E-value=1e+02 Score=23.53 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeC
Q psy2383 321 IFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPT 374 (391)
Q Consensus 321 ~~e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT 374 (391)
..+.+...+.. .+.....+.+.+|.+...+...+..+...|.+..- ++.+..+
T Consensus 8 l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~ 61 (121)
T 2pjp_A 8 IWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRN 61 (121)
T ss_dssp HHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECH
Confidence 34445444432 56778888999999877788899999999977655 4444443
No 410
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=33.64 E-value=1.1e+02 Score=26.97 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=36.4
Q ss_pred hhcCCCChhHHHHHhC--CCHHHHHHHHHHHHHCCCeEEcCCeEEeCc
Q psy2383 330 RLKDGFSPNLFFERTG--INIKIIESKLKNAEKLGLLKRNNKNIKPTS 375 (391)
Q Consensus 330 r~~~g~~~~~~~~~~~--~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~ 375 (391)
.+..|++.+.+..+.+ .+..-+...|+.|++.|.+..+++.+.+..
T Consensus 83 P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~~v~l~~ 130 (258)
T 1lva_A 83 PLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAG 130 (258)
T ss_dssp TTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETTEEEETT
T ss_pred CCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCCEEeCCC
Confidence 4567899999988775 344445778899999999999999998854
No 411
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=33.56 E-value=2.9e+02 Score=25.42 Aligned_cols=51 Identities=10% Similarity=-0.008 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEe
Q psy2383 151 DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 151 ~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y 203 (391)
|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.++|+|.+.+-
T Consensus 82 s~eEr~~vi~~~ve~~~g--rvpViaGvg~~st~eai~la~~A~~~Gadavlv~ 133 (343)
T 2v9d_A 82 GAEERKAIARFAIDHVDR--RVPVLIGTGGTNARETIELSQHAQQAGADGIVVI 133 (343)
T ss_dssp CHHHHHHHHHHHHHHHTT--SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 344444555554444 21 2334566655555666666666666666655443
No 412
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=33.45 E-value=63 Score=29.26 Aligned_cols=113 Identities=7% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCC
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGIN 129 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~ 129 (391)
.+.++...+++-..+++.++..| |....|+.++-.++++.+.+. ......+-+-+...+. +-+..+..+++|++
T Consensus 20 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~--~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (297)
T 2rfg_A 20 EKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQ--AQGRVPVIAGAGSNNPVEAVRYAQHAQQAGAD 97 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHH--HTTSSCBEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH--hCCCCeEEEccCCCCHHHHHHHHHHHHhcCCC
Q ss_pred EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 130 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 130 risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
.+.+-.-.+.. .+.+.+.+-.+.+.++.+ +-+ ++|..|+
T Consensus 98 avlv~~P~y~~---------~s~~~l~~~f~~va~a~~-lPi-ilYn~P~ 136 (297)
T 2rfg_A 98 AVLCVAGYYNR---------PSQEGLYQHFKMVHDAID-IPI-IVYNIPP 136 (297)
T ss_dssp EEEECCCTTTC---------CCHHHHHHHHHHHHHHCS-SCE-EEEECHH
T ss_pred EEEEcCCCCCC---------CCHHHHHHHHHHHHHhcC-CCE-EEEeCcc
No 413
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=33.19 E-value=1.2e+02 Score=21.48 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=34.2
Q ss_pred HHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCC
Q psy2383 326 LNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNK 369 (391)
Q Consensus 326 ~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~ 369 (391)
+..|+-.+..-...+++.+|.+-..+...|-.|++.|+|...++
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCC
Confidence 34555444466778889999987778899999999999987654
No 414
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=33.09 E-value=1e+02 Score=26.89 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=46.4
Q ss_pred EEEEeeCCCCCCHHHHHHh---HHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC
Q psy2383 105 SITLEANPSTFEIEKFHSY---SIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ 180 (391)
Q Consensus 105 eit~e~~p~~l~~e~l~~l---~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq 180 (391)
.+++|+...+ .++.++.- .+.. .+|-|-| +.| .+-.++++.+.+. ++ +|+-+||.++ |
T Consensus 65 ~VS~EV~a~d-~e~mi~eA~~L~~~~-~nv~IKI-------------P~T-~eGl~Ai~~L~~eGI~-vNvTliFS~~-Q 126 (230)
T 1vpx_A 65 PVSAEVVSLD-YEGMVREARELAQIS-EYVVIKI-------------PMT-PDGIKAVKTLSAEGIK-TNVTLVFSPA-Q 126 (230)
T ss_dssp CEEEECSCCS-HHHHHHHHHHHHTTC-TTEEEEE-------------ESS-HHHHHHHHHHHHTTCC-EEEEEECSHH-H
T ss_pred cEEEEEccCC-HHHHHHHHHHHHHhC-CCEEEEe-------------CCC-HHHHHHHHHHHHCCCC-EEEEEeCCHH-H
Confidence 6888887322 23444443 3333 4455544 233 4567888888888 76 9999999863 3
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEecc
Q psy2383 181 TLSELMLDLNYAIQYSPPHLSLYSL 205 (391)
Q Consensus 181 t~e~~~~~l~~~~~l~~~~is~y~l 205 (391)
.-.+.+.|+..||.|-=
T Consensus 127 --------A~laa~AGa~~iSpFVg 143 (230)
T 1vpx_A 127 --------AILAAKAGATYVSPFVG 143 (230)
T ss_dssp --------HHHHHHHTCSEEEEBHH
T ss_pred --------HHHHHhCCCeEEEeccc
Confidence 22334668888888753
No 415
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=33.08 E-value=2.7e+02 Score=25.02 Aligned_cols=81 Identities=5% Similarity=-0.073 Sum_probs=50.1
Q ss_pred CCCHHH----HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEK----FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~----l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
++|.+. ++.+.+.|++.|.+.=-|+--.. .|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 32 ~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~-------Lt~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~l 102 (304)
T 3l21_A 32 SLDTATAARLANHLVDQGCDGLVVSGTTGESPT-------TTDGEKIELLRAVLEAVGD--RARVIAGAGTYDTAHSIRL 102 (304)
T ss_dssp CBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-------SCHHHHHHHHHHHHHHHTT--TSEEEEECCCSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCccccchhh-------CCHHHHHHHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHH
Confidence 455543 34455578887776533332221 3566666777766665 22 2446777766777777777
Q ss_pred HHHHHhcCCCeEEEe
Q psy2383 189 LNYAIQYSPPHLSLY 203 (391)
Q Consensus 189 l~~~~~l~~~~is~y 203 (391)
.+.+.++|+|.+.+-
T Consensus 103 a~~a~~~Gadavlv~ 117 (304)
T 3l21_A 103 AKACAAEGAHGLLVV 117 (304)
T ss_dssp HHHHHHHTCSEEEEE
T ss_pred HHHHHHcCCCEEEEC
Confidence 888888888877554
No 416
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=32.99 E-value=1.9e+02 Score=25.49 Aligned_cols=115 Identities=8% Similarity=0.043 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHH
Q psy2383 112 PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 112 p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~ 185 (391)
|+.-|.-..+.+.++|++-|-+|=-|.. -.+|.+ .|.+++...++.+.+. .+ +.+|+=+|+ |.++
T Consensus 25 ~~ayD~~sA~~~~~aG~dai~vg~~s~a----~~~G~pD~~~vt~~em~~~~~~I~r~~~~p-viaD~~~Gy-g~~~--- 95 (255)
T 2qiw_A 25 PTVWDTWSAGLVEEAGFSGLTIGSHPVA----DATGSSDGENMNFADYMAVVKKITSAVSIP-VSVDVESGY-GLSP--- 95 (255)
T ss_dssp CEESSHHHHHHHHHTTCSCEEECHHHHH----HHTTCCTTTCSCHHHHHHHHHHHHHHCSSC-EEEECTTCT-TCCH---
T ss_pred ecCcCHHHHHHHHHcCCCEEEEChHHHH----HhCCCCCCCCcCHHHHHHHHHHHHhcCCCC-EEeccCCCc-CcHH---
Confidence 4446777888889999999888721111 135544 4888988888888777 66 899999995 7777
Q ss_pred HHHHHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q psy2383 186 MLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYY 243 (391)
Q Consensus 186 ~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy 243 (391)
.+++..+.+.|+.-|.+=.-...+|. .+-+.++..+....+.+...+.|-
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~~~~k--------~l~~~~e~~~~I~a~~~a~~~~g~ 145 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHSEGK--------RVREAQEHADYIAAARQAADVAGV 145 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEGGGTT--------EECCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCcEEEECCCCCCCCC--------cccCHHHHHHHHHHHHHHHHhcCC
Confidence 78888888999887755433221211 234456666666666666554453
No 417
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=32.83 E-value=35 Score=31.83 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=40.0
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE-cCCe-EEeCcchHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLGLLKR-NNKN-IKPTSFGRYF 380 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~-~~~~-~~lT~~G~~~ 380 (391)
.++.+++.++.|.+...+...|..|...|+++. ++++ +.+|+.+..+
T Consensus 71 ~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L 119 (369)
T 3gwz_A 71 PRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVL 119 (369)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHH
Confidence 477889999999998878899999999999998 4577 9999877653
No 418
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} PDB: 3vdh_A*
Probab=32.82 E-value=2.5e+02 Score=25.83 Aligned_cols=121 Identities=10% Similarity=-0.009 Sum_probs=66.4
Q ss_pred CCCHHHHHHhHHCCCCEEEEec--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhh-cccceEeEecCCCC--------
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGI--QSFNNKYLNILGRTHD---SKQAKYAIEIAKQY-FNNFNLDLIYALPN-------- 179 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGv--qS~~~~~l~~l~R~~~---~~~~~~~i~~~~~~-~~~v~~dlI~GlPg-------- 179 (391)
.++++.++.+++.|+|.|-|.| +.+.+. +-..+ .+.+.++|+.+.+. +. +-+|+- ..||
T Consensus 52 ~~t~~di~~ik~~G~N~vRipi~w~~~~~~-----~g~~d~~~l~~ld~vVd~a~~~Gi~-vIldlH-~~~g~~~g~w~~ 124 (353)
T 3l55_A 52 ETTQDMMTFLMQNGFNAVRIPVTWYEHMDA-----EGNVDEAWMMRVKAIVEYAMNAGLY-AIVNVH-HDTAAGSGAWIK 124 (353)
T ss_dssp CCCHHHHHHHHHTTEEEEEECCCCGGGBCT-----TCCBCHHHHHHHHHHHHHHHHHTCE-EEEECC-TTBSSSTTCCBC
T ss_pred CCCHHHHHHHHHcCCCEEEEcccHHHhcCC-----CCCcCHHHHHHHHHHHHHHHHCCCE-EEEECC-CCCcccCCCccc
Confidence 4689999999999998666554 222111 11122 34567888888888 65 667763 3443
Q ss_pred C-------CHHHHHHHHHHHHh-cC--CCeEEEecccccCCCcccCCCCC-CCCCHHHHHHHHHHHHHHHHHCC
Q psy2383 180 Q-------TLSELMLDLNYAIQ-YS--PPHLSLYSLTIEPNTYFFKYPPL-SMPSNDENAVMQDKITSLLKNNY 242 (391)
Q Consensus 180 q-------t~e~~~~~l~~~~~-l~--~~~is~y~l~~~pgT~l~~~~~~-~~p~~~~~~~~~~~~~~~L~~~G 242 (391)
. +.+.+.+-.+.+.+ ++ ++++ .|.+.=+|...-...... .....+...+.++.+.+..++.|
T Consensus 125 ~~~~~~~~~~~~~~~~w~~iA~~yk~~~~~v-~fel~NEP~~~~~~W~~~~~~~~~~~l~~~~q~~i~aIRa~g 197 (353)
T 3l55_A 125 ADTDVYAATKEKFKKLWTQIANALADYDQHL-LFEGYNEMLDGNNSWDEPQKASGYEALNNYAQDFVDAVRATG 197 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTSCTTE-EEECCSCCCCTTCCSSSCSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccccHHHHHHHHHHHHHHHHHHcCCCCeE-EEEEecCCCCCCCccccccchhHHHHHHHHHHHHHHHHHhcC
Confidence 1 23444444444443 32 3444 566665664321111100 01112344467788888898887
No 419
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.79 E-value=67 Score=30.58 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=39.6
Q ss_pred HHHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 323 EFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 323 e~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
..++..|+....++..++.+.+|.+...+...++.|++.|++...+
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3456667777889999999999999888999999999999998865
No 420
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=32.73 E-value=2.7e+02 Score=24.94 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=52.8
Q ss_pred CeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCC-CCHHHHHHhHHCCCCEEEEecCCCCHHHHH
Q psy2383 68 KIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPST-FEIEKFHSYSIIGINRLSIGIQSFNNKYLN 144 (391)
Q Consensus 68 ~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~-l~~e~l~~l~~~Gv~risiGvqS~~~~~l~ 144 (391)
.+-+++.=+ |.||. +++.++++++.|++.. +++-+.+.+.... -.++.++.+ +..-.-.|+.+=|.|-. .
T Consensus 49 aivHlH~Rd~~G~ps~-d~~~~~e~~~~IR~~~---pd~ii~~TTgg~~~~~eeR~~~~-~~~Pe~aSl~~Gs~Nf~--~ 121 (284)
T 3chv_A 49 AIAHCHVRNDDGTPSS-DPDRFARLTEGLHTHC---PGMIVQFSTGGRSGAGQARGGML-PLKPDMASLSVGSNNFP--S 121 (284)
T ss_dssp CEEEECEECTTSCEEC-CHHHHHHHHHHHHHHS---TTCEEEECCCTTTCCGGGGGTTG-GGCCSEEEECCSCEECS--S
T ss_pred cEEEeeecCCCCCcCC-CHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCCHHHHHHhh-hcCCCEEEecCcccccC--C
Confidence 455565554 78886 8889999999999873 3445555542211 123455555 45556677766554421 0
Q ss_pred HhCCCCCHHHHHHHHHHHHhh
Q psy2383 145 ILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 145 ~l~R~~~~~~~~~~i~~~~~~ 165 (391)
.+ =..+.+.+.+.++.+++.
T Consensus 122 ~v-~~n~~~~~~~~~~~~~e~ 141 (284)
T 3chv_A 122 RV-YENPPDLVDWLAAQMRSY 141 (284)
T ss_dssp SE-ECCCHHHHHHHHHHHHHH
T ss_pred cc-ccCCHHHHHHHHHHHHHc
Confidence 00 013566677777777766
No 421
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=32.70 E-value=64 Score=30.38 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=38.6
Q ss_pred HHHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 324 FMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 324 ~~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
.++..|+....++..++.+..|.+...+...++.|++.|++...+
T Consensus 20 ~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeec
Confidence 456667777889999999999999888999999999999998754
No 422
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=32.61 E-value=2.7e+02 Score=24.90 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q psy2383 87 LDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYF 166 (391)
Q Consensus 87 l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~ 166 (391)
+...++.+++.++.. .+.+|+. +.+.++...++|++.|-+.- .+++++.++++.++..+
T Consensus 181 i~~av~~ar~~~~~~---~I~Vev~----t~eea~eal~aGaD~I~LDn--------------~~~~~~~~~v~~l~~~~ 239 (284)
T 1qpo_A 181 VVDALRAVRNAAPDL---PCEVEVD----SLEQLDAVLPEKPELILLDN--------------FAVWQTQTAVQRRDSRA 239 (284)
T ss_dssp HHHHHHHHHHHCTTS---CEEEEES----SHHHHHHHGGGCCSEEEEET--------------CCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCC---CEEEEeC----CHHHHHHHHHcCCCEEEECC--------------CCHHHHHHHHHHhhccC
Confidence 345566677776532 4555554 35666666678999877764 35678888888887753
Q ss_pred ccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEEeccc
Q psy2383 167 NNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLT 206 (391)
Q Consensus 167 ~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~ 206 (391)
+++.+-..=|+--+|.. .+.+.|+|.|++-.++
T Consensus 240 ~~v~ieaSGGIt~~~i~-------~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 240 PTVMLESSGGLSLQTAA-------TYAETGVDYLAVGALT 272 (284)
T ss_dssp TTCEEEEESSCCTTTHH-------HHHHTTCSEEECGGGT
T ss_pred CCeEEEEECCCCHHHHH-------HHHhcCCCEEEECHHH
Confidence 33555555566444444 4456799999877654
No 423
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=32.42 E-value=46 Score=33.53 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHH
Q psy2383 351 IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~ 387 (391)
....++.|.+.|++..++.++.+|++|+.+.+.+-..
T Consensus 497 rA~iI~~L~~R~Yv~~~~k~l~pT~~G~~l~~~L~~~ 533 (592)
T 1mw9_X 497 YASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEEN 533 (592)
T ss_dssp HHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceeecCCEeeecHHHHHHHHHHHHh
Confidence 4567888999999999999999999999988776543
No 424
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=32.38 E-value=88 Score=28.98 Aligned_cols=97 Identities=9% Similarity=0.128 Sum_probs=62.9
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.|++.|.| ...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 65 Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~--grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~---- 138 (343)
T 2v9d_A 65 GVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD--RRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYW---- 138 (343)
T ss_dssp TCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSS----
T ss_pred CCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC----
Confidence 57888888844 555788888889888887643 23455555433222 234555566789999988766543
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+ .+.+.+.+-.+.+.++ ++ + ++|..|+
T Consensus 139 ----~-~s~~~l~~~f~~VA~a~~lP---i-ilYn~P~ 167 (343)
T 2v9d_A 139 ----K-VSEANLIRYFEQVADSVTLP---V-MLYNFPA 167 (343)
T ss_dssp ----C-CCHHHHHHHHHHHHHTCSSC---E-EEEECHH
T ss_pred ----C-CCHHHHHHHHHHHHHhcCCC---E-EEEeCch
Confidence 2 2667777777776665 44 3 4777775
No 425
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=32.23 E-value=36 Score=29.90 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=26.5
Q ss_pred ChhHHHHHhCCCHHHHH---HHHHHHHHCCCeEEc-CCeEEeCcchHHHHHHHHH
Q psy2383 336 SPNLFFERTGINIKIIE---SKLKNAEKLGLLKRN-NKNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~---~~l~~l~~~gl~~~~-~~~~~lT~~G~~~~~~i~~ 386 (391)
+...-++..+++-..+- ..|+.-...-|+.++ +..+.||+.|..++..+-.
T Consensus 20 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~~ 74 (306)
T 3fzv_A 20 SVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKAQE 74 (306)
T ss_dssp SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHHHHH
Confidence 34555566666533333 445555556788886 7889999999999887643
No 426
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=32.18 E-value=41 Score=30.44 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=42.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+++.|.+.- ++++.+++..+.++..+ +. +.+|+.. .++.+.++.+++.|++.||+|-
T Consensus 214 GaD~I~LDn-----~~~~~~~~~v~~l~~~~---~~--v~ieaSG-GIt~~~i~~~a~tGVD~isvG~ 270 (284)
T 1qpo_A 214 KPELILLDN-----FAVWQTQTAVQRRDSRA---PT--VMLESSG-GLSLQTAATYAETGVDYLAVGA 270 (284)
T ss_dssp CCSEEEEET-----CCHHHHHHHHHHHHHHC---TT--CEEEEES-SCCTTTHHHHHHTTCSEEECGG
T ss_pred CCCEEEECC-----CCHHHHHHHHHHhhccC---CC--eEEEEEC-CCCHHHHHHHHhcCCCEEEECH
Confidence 467777754 46788888888888643 12 3455543 5889999999999999999985
No 427
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=32.07 E-value=1.2e+02 Score=21.96 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=38.9
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEE--cCC--eEEeCcchHHHH
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKR--NNK--NIKPTSFGRYFL 381 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~--~~~--~~~lT~~G~~~~ 381 (391)
.++....++.+..|.+...+...|+.|++. ++.. +|. .+++|+.|..-.
T Consensus 39 ~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 39 HKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 456888999999999988888999999999 9973 343 477898886533
No 428
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=31.93 E-value=2.8e+02 Score=24.85 Aligned_cols=81 Identities=9% Similarity=-0.037 Sum_probs=49.1
Q ss_pred CCCHHHH----HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEKF----HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l----~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
.+|.+.+ +.+.+.|++.|.+.=-|+--.. -|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 29 ~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-------Ls~eEr~~v~~~~~~~~~g--rvpViaGvg~~~t~~ai~l 99 (301)
T 1xky_A 29 NIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPT-------LTSEEKVALYRHVVSVVDK--RVPVIAGTGSNNTHASIDL 99 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-------SCHHHHHHHHHHHHHHHTT--SSCEEEECCCSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccChhh-------CCHHHHHHHHHHHHHHhCC--CceEEeCCCCCCHHHHHHH
Confidence 4555544 3345578888776432222111 2455666666666655 22 2346778766677777778
Q ss_pred HHHHHhcCCCeEEEe
Q psy2383 189 LNYAIQYSPPHLSLY 203 (391)
Q Consensus 189 l~~~~~l~~~~is~y 203 (391)
.+.+.++|+|.+.+-
T Consensus 100 a~~A~~~Gadavlv~ 114 (301)
T 1xky_A 100 TKKATEVGVDAVMLV 114 (301)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHhcCCCEEEEc
Confidence 888888888877554
No 429
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=31.88 E-value=79 Score=28.55 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccccc
Q psy2383 181 TLSELMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 181 t~e~~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
..+.+.+.++++.++|+.++++|.++.+
T Consensus 84 G~~~l~~iv~~c~~lGI~~LTlYaFStE 111 (284)
T 2vg3_A 84 GEAVVIDIACGAIELGIKWLSLYAFSTE 111 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCc
Confidence 4588999999999999999999999754
No 430
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=31.86 E-value=1.3e+02 Score=30.61 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCeEEcCCeEEeCcchHHHHH
Q psy2383 350 IIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLN 382 (391)
Q Consensus 350 ~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~ 382 (391)
.+...++.|.+.|++..+++.+.+|+.|+..+.
T Consensus 472 ~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~ 504 (715)
T 2va8_A 472 YFDRAIRWLLEHSFIKEEGNTFALTNFGKRVAD 504 (715)
T ss_dssp HHHHHHHHHHHTTSEEECSSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCcCEeecCCeEeeChHHHHHHH
Confidence 367889999999999998899999999998764
No 431
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=31.77 E-value=22 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=33.6
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeCcc
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPTSF 376 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT~~ 376 (391)
+...+.+.||++...+...+..|++.|+++... ....+++.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~G~~v~~~ 78 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN 78 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCeEEEccC
Confidence 677889999998777889999999999998764 66666643
No 432
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=31.76 E-value=1e+02 Score=27.12 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=7.0
Q ss_pred HHHhHHCCCCEEEEe
Q psy2383 120 FHSYSIIGINRLSIG 134 (391)
Q Consensus 120 l~~l~~~Gv~risiG 134 (391)
.+.+++.|+.-.+++
T Consensus 74 ~~~l~~~gl~~~~~~ 88 (290)
T 2zvr_A 74 KILSEELNLPICAIG 88 (290)
T ss_dssp HHHHHHHTCCEEEEE
T ss_pred HHHHHHcCCeEEEEe
Confidence 334445555444444
No 433
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=31.76 E-value=69 Score=28.26 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccccc
Q psy2383 181 TLSELMLDLNYAIQYSPPHLSLYSLTIE 208 (391)
Q Consensus 181 t~e~~~~~l~~~~~l~~~~is~y~l~~~ 208 (391)
..+.+.+.++++.++|+.++++|.++.+
T Consensus 44 G~~~l~~iv~~c~~~GI~~lTlYaFSte 71 (245)
T 2d2r_A 44 GVKTLKDITIWCANHKLECLTLYAFSTE 71 (245)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEECC---
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCc
Confidence 3588999999999999999999999754
No 434
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=31.67 E-value=1.1e+02 Score=27.57 Aligned_cols=81 Identities=9% Similarity=0.034 Sum_probs=54.7
Q ss_pred HHHHHHhHHCCCC-EEEEecCCCCHHHHHHhCC--CCCHHHHHHHHHHHHhh--cccceEeEecCCCCCCHHHHHHHHHH
Q psy2383 117 IEKFHSYSIIGIN-RLSIGIQSFNNKYLNILGR--THDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQTLSELMLDLNY 191 (391)
Q Consensus 117 ~e~l~~l~~~Gv~-risiGvqS~~~~~l~~l~R--~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~e~~~~~l~~ 191 (391)
.+.++.+.++|++ -|.+.+-|-+ . +. ++ ..+.+.+.+.++.+++. ++ +.+=+ . |+-+.+++.+..+.
T Consensus 109 ~~~a~~~~~~g~d~~iein~~~P~--~-~g-~~~~g~~~e~~~~iv~~vr~~~~~P-v~vKi--~-~~~~~~~~~~~a~~ 180 (311)
T 1jub_A 109 IAMLKKIQESDFSGITELNLSCPN--V-PG-EPQLAYDFEATEKLLKEVFTFFTKP-LGVKL--P-PYFDLVHFDIMAEI 180 (311)
T ss_dssp HHHHHHHHHSCCCSEEEEESCCCC--S-SS-CCCGGGCHHHHHHHHHHHTTTCCSC-EEEEE--C-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeccCCC--C-CC-cccccCCHHHHHHHHHHHHHhcCCC-EEEEE--C-CCCCHHHHHHHHHH
Confidence 3566667788999 8998874333 2 10 11 23777788888888876 44 33322 2 45588888888889
Q ss_pred HHhcCCCeEEEecc
Q psy2383 192 AIQYSPPHLSLYSL 205 (391)
Q Consensus 192 ~~~l~~~~is~y~l 205 (391)
+.+.|++-|.+...
T Consensus 181 ~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 181 LNQFPLTYVNSVNS 194 (311)
T ss_dssp HTTSCCCEEEECCC
T ss_pred HHHcCCcEEEecCC
Confidence 99999999987653
No 435
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=31.52 E-value=82 Score=27.29 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=33.2
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCcc
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTSF 376 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~~ 376 (391)
+-..+.+.||++-..+...++.|+++|++... +....+++.
T Consensus 35 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 56678899999988899999999999999875 556666653
No 436
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=31.51 E-value=46 Score=30.32 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=40.9
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS 137 (391)
+++.|.+--. +++.+++..+.+. ..+.+|+.. .++.+.++.+++.|++.||+|-=+
T Consensus 229 GaD~I~LDn~-----~~~~l~~av~~i~--------~~v~ieaSG-GI~~~~i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 229 GARSVLLDNF-----TLDMMRDAVRVTE--------GRAVLEVSG-GVNFDTVRAIAETGVDRISIGALT 284 (298)
T ss_dssp TCEEEEEESC-----CHHHHHHHHHHHT--------TSEEEEEES-SCSTTTHHHHHHTTCSEEECGGGG
T ss_pred CCCEEEECCC-----CHHHHHHHHHHhC--------CCCeEEEEc-CCCHHHHHHHHHcCCCEEEECCee
Confidence 4788888543 5667777766552 145666654 489999999999999999999643
No 437
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=31.40 E-value=44 Score=24.92 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=28.8
Q ss_pred cCCCChhHHHHHhCC----CHHHHHHHHHHHHHCCCeEEc
Q psy2383 332 KDGFSPNLFFERTGI----NIKIIESKLKNAEKLGLLKRN 367 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~----~~~~~~~~l~~l~~~gl~~~~ 367 (391)
.+++...++.+..+. +...+...|+.|++.|||...
T Consensus 47 ~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 47 LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 457888888887764 355688999999999999864
No 438
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=31.23 E-value=1.8e+02 Score=28.03 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCC-CCCC-----H---HHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYAL-PNQT-----L---SELML 187 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~Gl-Pgqt-----~---e~~~~ 187 (391)
.+.++.+.+.|.|..-.+.-. |+....+-.-.++.++..+.-+.+..+-. -+++|++++ ||.+ . +.+.+
T Consensus 20 ~~l~~f~g~~kmNtYiYAPKD-Dpyhr~~WRe~Yp~eel~~l~eLv~~a~~-~~V~Fv~aisPG~di~~s~~~d~~~L~~ 97 (447)
T 2xsa_A 20 ATVMDWIAAAGMNTYIYGPKD-DVHVRARWRVPYDAAGLARLTELRDAAAA-RGMVFYVSLAPCLDVTYSDPQDRAALLA 97 (447)
T ss_dssp HHHHHHHHHTTCCEEEECCTT-CTTTTTTTTSCCCHHHHHHHHHHHHHHHT-TTCEEEEEECCCSSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEccCC-ChHHHHhhcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCcccCCCCHHHHHHHHH
Confidence 456777888889988888653 44444455556777776554333333322 567778875 7653 2 34556
Q ss_pred HHHHHHhcCCCeEEEec
Q psy2383 188 DLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 188 ~l~~~~~l~~~~is~y~ 204 (391)
-++.+.++|+.++.+.-
T Consensus 98 K~~ql~~lGVr~FaIlf 114 (447)
T 2xsa_A 98 RVDQLARAGLRNLVLLF 114 (447)
T ss_dssp HHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHhCCCEEEEec
Confidence 67778889999888764
No 439
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=30.97 E-value=1.8e+02 Score=28.03 Aligned_cols=30 Identities=7% Similarity=-0.078 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcCC--CeEEEecccccCCCcccCC
Q psy2383 182 LSELMLDLNYAIQYSP--PHLSLYSLTIEPNTYFFKY 216 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~--~~is~y~l~~~pgT~l~~~ 216 (391)
.+.+.+.++.+.+.|+ +.|- +.||.-|.+.
T Consensus 343 ~~~l~~~i~~a~~aGI~~~~Ii-----lDPGiGF~Kt 374 (442)
T 3mcm_A 343 CDYIEQKKQILLKHGIAQQNIY-----FDIGFGFGKK 374 (442)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEE-----EECCCC----
T ss_pred HHHHHHHHHHHHHcCCCHHHEE-----EeCCCCCCCC
Confidence 4455667778888887 3442 3455555544
No 440
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=30.94 E-value=1.8e+02 Score=25.09 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC-----------CCC---CC
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA-----------LPN---QT 181 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G-----------lPg---qt 181 (391)
++.++.++++|++.|.+.... ..+ ..+..+.+++. +.-+++..-++ -|. ++
T Consensus 26 ~~~l~~~~~~G~~~vEl~~~~-----------~~~---~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 91 (269)
T 3ngf_A 26 LERFRLAAEAGFGGVEFLFPY-----------DFD---ADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEF 91 (269)
T ss_dssp HHHHHHHHHTTCSEEECSCCT-----------TSC---HHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCc-----------cCC---HHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHH
Confidence 678888889999988886421 123 33334444555 43122221111 111 13
Q ss_pred HHHHHHHHHHHHhcCCCeEEEe
Q psy2383 182 LSELMLDLNYAIQYSPPHLSLY 203 (391)
Q Consensus 182 ~e~~~~~l~~~~~l~~~~is~y 203 (391)
.+.+++.++.+.++|++.|.+.
T Consensus 92 ~~~~~~~i~~A~~lGa~~v~~~ 113 (269)
T 3ngf_A 92 RDNVDIALHYALALDCRTLHAM 113 (269)
T ss_dssp HHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEc
Confidence 4667788888889998888654
No 441
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=30.60 E-value=3.5e+02 Score=25.47 Aligned_cols=92 Identities=8% Similarity=-0.003 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC-CHHHHHHhCCCCCHHHHHHHHH
Q psy2383 82 ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF-NNKYLNILGRTHDSKQAKYAIE 160 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~-~~~~l~~l~R~~~~~~~~~~i~ 160 (391)
++.++++.|.+..++. + +.+. +.| +|.+.++.|.+.|+..+-||-=.. |-..|+.+++..
T Consensus 98 l~~e~~~~L~~~~~~~-G----i~~~--stp--fD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~g---------- 158 (385)
T 1vli_A 98 MPAEWILPLLDYCREK-Q----VIFL--STV--CDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLN---------- 158 (385)
T ss_dssp SCGGGHHHHHHHHHHT-T----CEEE--CBC--CSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTC----------
T ss_pred CCHHHHHHHHHHHHHc-C----CcEE--Ecc--CCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcC----------
Confidence 6788888888887764 2 3333 334 799999999999999999983222 333444443211
Q ss_pred HHHhhcccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 161 IAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 161 ~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
-+ +-|=-|+ .|.++|...++.+.+.|.+.|.+
T Consensus 159 -----KP---ViLStGm--aTl~Ei~~Ave~i~~~Gn~~iiL 190 (385)
T 1vli_A 159 -----RP---MIFSTAG--AEISDVHEAWRTIRAEGNNQIAI 190 (385)
T ss_dssp -----SC---EEEECTT--CCHHHHHHHHHHHHTTTCCCEEE
T ss_pred -----Ce---EEEECCC--CCHHHHHHHHHHHHHCCCCcEEE
Confidence 22 2233354 26666666666666666544443
No 442
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=30.54 E-value=68 Score=32.18 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=44.3
Q ss_pred HHHhhhhcCCCChhHHHHHhCCCHHHHHHHHHHHHH-----CCCeEEcCCeEEeCcc
Q psy2383 325 MLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEK-----LGLLKRNNKNIKPTSF 376 (391)
Q Consensus 325 ~~~~lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~-----~gl~~~~~~~~~lT~~ 376 (391)
++..|+....++.+.+.+.++.+...+...|+.|.+ .||++..++.|.|+++
T Consensus 435 iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~ 491 (583)
T 3lmm_A 435 VLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNA 491 (583)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHH
T ss_pred HHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHH
Confidence 334456667799999999999988888899999999 8999999999999985
No 443
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=30.44 E-value=31 Score=31.31 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=41.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+++.|.++- ++++.+++..+.++..++ .+ .+|+.. .++.+.++.+++.|++.||+|-
T Consensus 213 GaD~I~LDn-----~~~e~l~~av~~l~~~~~---~v--~ieASG-GIt~eni~~~a~tGVD~IsvGs 269 (285)
T 1o4u_A 213 GADIVMLDN-----LSPEEVKDISRRIKDINP---NV--IVEVSG-GITEENVSLYDFETVDVISSSR 269 (285)
T ss_dssp TCSEEEEES-----CCHHHHHHHHHHHHHHCT---TS--EEEEEE-CCCTTTGGGGCCTTCCEEEEGG
T ss_pred CCCEEEECC-----CCHHHHHHHHHHhhccCC---Cc--eEEEEC-CCCHHHHHHHHHcCCCEEEEeH
Confidence 467777764 477889998888876432 23 444433 4788888899999999999995
No 444
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=30.33 E-value=1.5e+02 Score=26.51 Aligned_cols=88 Identities=6% Similarity=0.087 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec----CCCCHHHHHHhCCCCCHHHHHH
Q psy2383 82 ISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI----QSFNNKYLNILGRTHDSKQAKY 157 (391)
Q Consensus 82 l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv----qS~~~~~l~~l~R~~~~~~~~~ 157 (391)
-..+.+..++..+++. ++++|+=++| +.+.++.-++.|.++|.+-- ..+++...+. -.+.+.+
T Consensus 139 ~~~~~L~~~i~~L~~~-----GIrVSLFIDp---d~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~~~-----el~rl~~ 205 (278)
T 3gk0_A 139 GHFDAVRAACKQLADA-----GVRVSLFIDP---DEAQIRAAHETGAPVIELHTGRYADAHDAAEQQR-----EFERIAT 205 (278)
T ss_dssp TTHHHHHHHHHHHHHT-----TCEEEEEECS---CHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHH-----HHHHHHH
T ss_pred ccHHHHHHHHHHHHHC-----CCEEEEEeCC---CHHHHHHHHHhCcCEEEEecchhhccCCchhHHH-----HHHHHHH
Confidence 3566677777777653 5788888888 58999999999999999932 2233222111 1234555
Q ss_pred HHHHHHhh-cccceEeEecCCCCCCHHHH
Q psy2383 158 AIEIAKQY-FNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 158 ~i~~~~~~-~~~v~~dlI~GlPgqt~e~~ 185 (391)
+.+.+++. .. +.-=-||--++...+
T Consensus 206 aA~~A~~lGL~---VnAGHGL~y~Nv~~i 231 (278)
T 3gk0_A 206 GVDAGIALGLK---VNAGHGLHYTNVQAI 231 (278)
T ss_dssp HHHHHHHTTCE---EEECTTCCTTTHHHH
T ss_pred HHHHHHHcCCE---EecCCCCCHHHHHHH
Confidence 55555555 33 333456655565544
No 445
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=30.26 E-value=3e+02 Score=24.65 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=40.3
Q ss_pred HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 120 l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
++.+.+.|++.|.+.=-|+--.. -|.++-.+.++.+.+. -. ..+-+|.|.-+.+.++..+-.+.+.+.|+|
T Consensus 34 v~~li~~Gv~gl~v~GttGE~~~-------Ls~~Er~~v~~~~~~~~~g-~rvpviaGvg~~~t~~ai~la~~a~~~Gad 105 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGESAT-------LTHEEHRTCIEIAVETCKG-TKVKVLAGAGSNATHEAVGLAKFAKEHGAD 105 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTGGG-------SCHHHHHHHHHHHHHHHTT-SSCEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCEEEECccccChhh-------CCHHHHHHHHHHHHHHhCC-CCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 33344566766665433322111 2455555556555555 21 123456666555666666666777777776
Q ss_pred eEEEe
Q psy2383 199 HLSLY 203 (391)
Q Consensus 199 ~is~y 203 (391)
.+.+-
T Consensus 106 avlv~ 110 (301)
T 3m5v_A 106 GILSV 110 (301)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66443
No 446
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=30.23 E-value=54 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.0
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCeEEcCCe
Q psy2383 342 ERTGINIKIIESKLKNAEKLGLLKRNNKN 370 (391)
Q Consensus 342 ~~~~~~~~~~~~~l~~l~~~gl~~~~~~~ 370 (391)
.+|..++..+...++.|++.++++.+++.
T Consensus 41 ~rF~p~~~~IKk~IE~LIereYl~R~~~~ 69 (77)
T 3tdu_C 41 SRFKPRVPVIKKCIDILIEKEYLERVDGE 69 (77)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CcCCCCHHHHHHHHHHHHhhhHhhcCCCC
Confidence 46777777788899999999999998753
No 447
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=30.15 E-value=2e+02 Score=25.58 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=61.6
Q ss_pred CeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 68 KIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 68 ~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+++.++..|.| ...|+.++-.++++.+.+..+ + +-+-+...+. +-+..+..+++|++.+.+-.-.+.
T Consensus 32 Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~---g--vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~---- 102 (286)
T 2r91_A 32 GVDVVFVAGTTGLGPALSLQEKMELTDAATSAAR---R--VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYF---- 102 (286)
T ss_dssp TCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCS---S--EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSS----
T ss_pred CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---C--EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCC----
Confidence 58889998844 555788888899998887633 2 3333332222 234555667789999988766553
Q ss_pred HHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCC
Q psy2383 144 NILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPN 179 (391)
Q Consensus 144 ~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPg 179 (391)
+..+.+.+.+-.+.+.++ .+ + ++|..|+
T Consensus 103 ----~~~s~~~l~~~f~~va~a~~lP---i-ilYn~P~ 132 (286)
T 2r91_A 103 ----PRLSERQIAKYFRDLCSAVSIP---V-FLYNYPA 132 (286)
T ss_dssp ----TTCCHHHHHHHHHHHHHHCSSC---E-EEEECHH
T ss_pred ----CCCCHHHHHHHHHHHHHhcCCC---E-EEEeChh
Confidence 213667777777766665 44 3 4677774
No 448
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=30.05 E-value=1.6e+02 Score=27.38 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhccCcccC---CCeeEEEE----------eCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCC
Q psy2383 46 EKKYLEALLIDVELSLPIILN---RKIHTIFI----------GGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANP 112 (391)
Q Consensus 46 ~~~y~~~l~~Ei~~~~~~~~~---~~~~~i~~----------gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p 112 (391)
...|++++.+-|+........ ..+ .|.| ..|.| -..+..+....|.+.+++.....+++..+.
T Consensus 171 ~p~~I~ala~~I~~~l~~~~~~~~~~~-~llfSaHglP~~~~~~GDp---Y~~q~~~ta~ll~e~lg~~~~~~~~fQSr~ 246 (362)
T 1lbq_A 171 NEGLIKAFSENITKKLQEFPQPVRDKV-VLLFSAHSLPMDVVNTGDA---YPAEVAATVYNIMQKLKFKNPYRLVWQSQV 246 (362)
T ss_dssp CHHHHHHHHHHHHHHHHTSCSTTGGGC-EEEEEEECCBHHHHTTTCS---HHHHHHHHHHHHHHHTTTCSCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHhcCcccCCCe-EEEEecCCCccccccCCCc---HHHHHHHHHHHHHHHcCCCCCEEEEEECCC
Confidence 356777777766643222211 112 3333 23444 245677777777777766444566666543
Q ss_pred C------CCCHHHHHHhHHCCCCEEEEecCCCCHHHH
Q psy2383 113 S------TFEIEKFHSYSIIGINRLSIGIQSFNNKYL 143 (391)
Q Consensus 113 ~------~l~~e~l~~l~~~Gv~risiGvqS~~~~~l 143 (391)
+ --+++.++.| +.|+.+|-+=-=+|.-+-+
T Consensus 247 G~~~WL~P~t~~~l~~L-~~G~k~vvVvP~gFvsD~l 282 (362)
T 1lbq_A 247 GPKPWLGAQTAEIAEFL-GPKVDGLMFIPIAFTSDHI 282 (362)
T ss_dssp SSSCBCSCBHHHHHHHH-GGGCSCEEEECTTCSSCCH
T ss_pred CCcccCCCCHHHHHHHH-HcCCCeEEEECCeechhhH
Confidence 2 2356777777 7787777654334443333
No 449
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=29.95 E-value=1.1e+02 Score=27.16 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=30.6
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC-CeEEeC
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRNN-KNIKPT 374 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~-~~~~lT 374 (391)
+-..+.+.||++-..+...|+.|+++|+|.... ....++
T Consensus 55 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~ 94 (272)
T 3eet_A 55 SQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSGTYVR 94 (272)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EEEC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCceEEEe
Confidence 566788999999888999999999999998653 344444
No 450
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=29.93 E-value=3.3e+02 Score=27.06 Aligned_cols=119 Identities=12% Similarity=0.178 Sum_probs=67.2
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHC--CCCEEE-EecCCCC--HHH
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSII--GINRLS-IGIQSFN--NKY 142 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~--Gv~ris-iGvqS~~--~~~ 142 (391)
+.+-|-+|-|.+..-..+.+++++..|++.. +..+++. +.+.+.++.--++ |..=|+ +.... + +++
T Consensus 353 GAdiIDIgpg~~~v~~~ee~~rvv~~i~~~~----~vpisID----T~~~~v~eaal~~~~G~~iINdis~~~-~~~~~~ 423 (566)
T 1q7z_A 353 GAEVLDVNFGIESQIDVRYVEKIVQTLPYVS----NVPLSLD----IQNVDLTERALRAYPGRSLFNSAKVDE-EELEMK 423 (566)
T ss_dssp TCSEEEEECSSGGGSCHHHHHHHHHHHHHHT----CSCEEEE----CCCHHHHHHHHHHCSSCCEEEEEESCH-HHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHhhC----CceEEEe----CCCHHHHHHHHHhcCCCCEEEECCcch-hhHHHH
Confidence 5677888877666667889999999998764 3466764 4567777765555 654331 22222 3 334
Q ss_pred HHHh---C--------C---CCC----HHHHHHHHHHHHhh-c-ccceEeEec---CCCCCCHHHHHHHHHHHHhcC
Q psy2383 143 LNIL---G--------R---THD----SKQAKYAIEIAKQY-F-NNFNLDLIY---ALPNQTLSELMLDLNYAIQYS 196 (391)
Q Consensus 143 l~~l---~--------R---~~~----~~~~~~~i~~~~~~-~-~~v~~dlI~---GlPgqt~e~~~~~l~~~~~l~ 196 (391)
+..+ + + +.| .+...+.++.+.++ + .++-+|-.+ |+ |..--++.+.++.+.+++
T Consensus 424 ~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~Gi~~~IilDPg~~~igf-gk~~~~~l~~~~~~~~~g 499 (566)
T 1q7z_A 424 INLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDRVIFDPGVLPLGA-EGKPVEVLKTIEFISSKG 499 (566)
T ss_dssp HHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCCTTT-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCCCCCcEEEeCCCCcccC-cHHHHHHHHHHHHHHhCC
Confidence 3332 1 1 111 23455566666666 6 456677666 54 322223344555555554
No 451
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=29.88 E-value=76 Score=27.65 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=39.1
Q ss_pred hcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE-EcCCeEEeCcc
Q psy2383 331 LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK-RNNKNIKPTSF 376 (391)
Q Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~-~~~~~~~lT~~ 376 (391)
...+.+.+.+.++.|.+...+...|..|.+.|++. ..++++.+-+.
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~~~~ 221 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVLDED 221 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEECHH
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEecHH
Confidence 34678899999999999888999999999999995 55788887754
No 452
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=29.85 E-value=79 Score=28.45 Aligned_cols=113 Identities=10% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCC
Q psy2383 54 LIDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGIN 129 (391)
Q Consensus 54 ~~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~ 129 (391)
.+.++...+++-..+++.++..| |....|+.++-.++++.+.+. ......+-+-+...+. +-+..+..+++|++
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~--~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 97 (292)
T 2vc6_A 20 EVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKT--ANGRVPVIAGAGSNSTAEAIAFVRHAQNAGAD 97 (292)
T ss_dssp HHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHH--HTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH--hCCCCcEEEecCCccHHHHHHHHHHHHHcCCC
Q ss_pred EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 130 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 130 risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
-+.+-.-.+.. .+.+.+.+-.+.+.++.+ +-+ ++|..|+
T Consensus 98 avlv~~P~y~~---------~s~~~l~~~f~~ia~a~~-lPi-ilYn~P~ 136 (292)
T 2vc6_A 98 GVLIVSPYYNK---------PTQEGIYQHFKAIDAAST-IPI-IVYNIPG 136 (292)
T ss_dssp EEEEECCCSSC---------CCHHHHHHHHHHHHHHCS-SCE-EEEECHH
T ss_pred EEEEcCCCCCC---------CCHHHHHHHHHHHHHhCC-CCE-EEEeCcc
No 453
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=29.84 E-value=1.9e+02 Score=27.92 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=71.3
Q ss_pred HHHHHHhHHCCCC--EEEEecCCCCHHHHH-----HhC----CCCCHHHHHHHHHHHHhh-cccceEeEecCCCC-----
Q psy2383 117 IEKFHSYSIIGIN--RLSIGIQSFNNKYLN-----ILG----RTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN----- 179 (391)
Q Consensus 117 ~e~l~~l~~~Gv~--risiGvqS~~~~~l~-----~l~----R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg----- 179 (391)
++.++.+++.|+| ||.++.+.+.+...- ..+ .....+.+.++++.+.+. +. +-+|+--. |+
T Consensus 87 ~~~i~~ik~~G~N~VRipi~~~~l~~~~~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~Gi~-VIldlH~~-~~~~~~~ 164 (458)
T 3qho_A 87 EDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIF-VLLDYHRI-GCTHIEP 164 (458)
T ss_dssp HHHHHHHHHTTCCEEEEEEETGGGSTTCCCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTTCE-EEEEEEES-SSSSCCS
T ss_pred HHHHHHHHHcCCCEEEEeeeHHHhCCCCCccccccccCccccchHHHHHHHHHHHHHHHCCCE-EEEecccC-CCccCCC
Confidence 5789999999998 667776655432100 001 112456788899999998 65 66776432 22
Q ss_pred ------CCHHHHHHHHHHHHhc-C-CCeEEEecccccCCCccc-----CC---CCCC-CCCHHHHHHHHHHHHHHHHHCC
Q psy2383 180 ------QTLSELMLDLNYAIQY-S-PPHLSLYSLTIEPNTYFF-----KY---PPLS-MPSNDENAVMQDKITSLLKNNY 242 (391)
Q Consensus 180 ------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~-----~~---~~~~-~p~~~~~~~~~~~~~~~L~~~G 242 (391)
.+.+.+.+-.+.+.+. + -+.|-.|.+.=+|..... .. ..+. ..+.......++.+.+..++.+
T Consensus 165 ~W~~~~~~~~~~~~~w~~lA~ryk~~p~Vi~~eL~NEP~~~~~~~~~~~~~~~~~W~~~~~~~~w~~~~~~ai~aIRa~d 244 (458)
T 3qho_A 165 LWYTEDFSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGATWGMGNPATDWNLAAERIGKAILKVA 244 (458)
T ss_dssp SSCBTTBCHHHHHHHHHHHHHHHTTSTTEEEEECSSCCCCSSCTTGGGTSSSSCBSSSSCTTTBHHHHHHHHHHHHHHHC
T ss_pred ccCCchhhHHHHHHHHHHHHHHhCCCCCEEEEEccCCCCcccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 2567777777766643 2 344656777777764210 00 0000 0112234455666777777665
Q ss_pred Cc
Q psy2383 243 YK 244 (391)
Q Consensus 243 y~ 244 (391)
=.
T Consensus 245 p~ 246 (458)
T 3qho_A 245 PH 246 (458)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 454
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=29.78 E-value=41 Score=30.17 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=40.3
Q ss_pred eeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 69 IHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 69 ~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
++.|-++- ++++.++++.+.++..++ .+ .+++.. .++.+.+..+.++|++.|++|-
T Consensus 203 aD~I~ld~-----~~~~~l~~~v~~l~~~~~---~~--~i~AsG-GI~~~ni~~~~~aGaD~i~vGs 258 (273)
T 2b7n_A 203 ADIVMCDN-----LSVLETKEIAAYRDAHYP---FV--LLEASG-NISLESINAYAKSGVDAISVGA 258 (273)
T ss_dssp CSEEEEET-----CCHHHHHHHHHHHHHHCT---TC--EEEEES-SCCTTTHHHHHTTTCSEEECTH
T ss_pred CCEEEECC-----CCHHHHHHHHHHhhccCC---Cc--EEEEEC-CCCHHHHHHHHHcCCcEEEEcH
Confidence 56666643 367888888887776532 23 444433 4789999999999999999983
No 455
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=29.54 E-value=50 Score=33.55 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHHHHHCCCeEEcCCeEEeCcchHHHHHHHHHH
Q psy2383 351 IESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQI 387 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~~~~~~lT~~G~~~~~~i~~~ 387 (391)
....++.|.+.|++..+++.+.+|+.|+.+.+.+-..
T Consensus 465 ~A~iI~~L~~R~Yv~~~~k~l~pT~~G~~l~~~l~~~ 501 (633)
T 2gai_A 465 YASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKK 501 (633)
T ss_dssp HHHHHHHHHHTTSEEEETTEEEEBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcEEEcCCEEEEChhHHHHHHHHHHh
Confidence 4567899999999999999999999999999877554
No 456
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=29.49 E-value=3e+02 Score=24.48 Aligned_cols=73 Identities=11% Similarity=-0.033 Sum_probs=39.7
Q ss_pred HhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeE
Q psy2383 122 SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHL 200 (391)
Q Consensus 122 ~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~i 200 (391)
.+.+.|++.|.+.=-|+--. ..|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.+.|+|.+
T Consensus 29 ~li~~Gv~gl~~~GttGE~~-------~Ls~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~la~~A~~~Gadav 99 (294)
T 2ehh_A 29 FHVDNGTDAILVCGTTGESP-------TLTFEEHEKVIEFAVKRAAG--RIKVIAGTGGNATHEAVHLTAHAKEVGADGA 99 (294)
T ss_dssp HHHTTTCCEEEESSTTTTGG-------GSCHHHHHHHHHHHHHHHTT--SSEEEEECCCSCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHCCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHHHhcCCCEE
Confidence 34446777766543222111 12445555555555554 22 2335667655666666667777777777766
Q ss_pred EEe
Q psy2383 201 SLY 203 (391)
Q Consensus 201 s~y 203 (391)
.+-
T Consensus 100 lv~ 102 (294)
T 2ehh_A 100 LVV 102 (294)
T ss_dssp EEE
T ss_pred EEC
Confidence 444
No 457
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=29.29 E-value=48 Score=30.56 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=39.1
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+++.|.+-- .+++.+++....+. + .+.+|+.. .++.+.++.+++.|++.||+|-
T Consensus 251 GaD~I~LDn-----~~~~~l~~av~~l~------~--~v~ieaSG-GIt~~~I~~~a~tGVD~isvGa 304 (320)
T 3paj_A 251 GADIIMLDN-----FSLEMMREAVKINA------G--RAALENSG-NITLDNLKECAETGVDYISVGA 304 (320)
T ss_dssp TCSEEEEES-----CCHHHHHHHHHHHT------T--SSEEEEES-SCCHHHHHHHHTTTCSEEECTH
T ss_pred CCCEEEECC-----CCHHHHHHHHHHhC------C--CCeEEEEC-CCCHHHHHHHHHcCCCEEEECc
Confidence 467777743 35677777776653 1 24555544 5899999999999999999984
No 458
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=29.20 E-value=3.1e+02 Score=24.46 Aligned_cols=74 Identities=5% Similarity=-0.021 Sum_probs=42.0
Q ss_pred HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCe
Q psy2383 121 HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPH 199 (391)
Q Consensus 121 ~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~ 199 (391)
+.+.+.|++.|.+.=-|+--. ..|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.++|+|.
T Consensus 31 ~~li~~Gv~gl~~~GttGE~~-------~Ls~~Er~~v~~~~~~~~~g--r~pviaGvg~~~t~~ai~la~~A~~~Gada 101 (294)
T 3b4u_A 31 RRCLSNGCDSVTLFGTTGEGC-------SVGSRERQAILSSFIAAGIA--PSRIVTGVLVDSIEDAADQSAEALNAGARN 101 (294)
T ss_dssp HHHHHTTCSEEEESSTTTTGG-------GSCHHHHHHHHHHHHHTTCC--GGGEEEEECCSSHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHcCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHhCC--CCcEEEeCCCccHHHHHHHHHHHHhcCCCE
Confidence 334456777776543222111 13455666666666655 22 233567765666777777777777777776
Q ss_pred EEEe
Q psy2383 200 LSLY 203 (391)
Q Consensus 200 is~y 203 (391)
+.+-
T Consensus 102 vlv~ 105 (294)
T 3b4u_A 102 ILLA 105 (294)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6443
No 459
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=29.11 E-value=12 Score=37.07 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHHHHHCC-CeEEc---CCeEEeCcchHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKNAEKLG-LLKRN---NKNIKPTSFGRYFLN 382 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~l~~~g-l~~~~---~~~~~lT~~G~~~~~ 382 (391)
.++...+.+..|.+...+...+..|.+.| +++.+ ...+.||++|.-++.
T Consensus 20 ~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~~~~~ 72 (508)
T 3l4g_A 20 GLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAR 72 (508)
T ss_dssp -----------------------------------------------------
T ss_pred CcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHHHHHH
Confidence 45666677777777777888899999998 88654 588999999987764
No 460
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=29.06 E-value=3.1e+02 Score=25.53 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCcEEEEeeCCCCC----CHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh--cccceEeEe
Q psy2383 101 KKNISITLEANPSTF----EIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLI 174 (391)
Q Consensus 101 ~~~~eit~e~~p~~l----~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI 174 (391)
...+.+.-++|-++. +.+++..|.++|+.-|-+++.+ ++..+++..+++. +| +..|+=
T Consensus 29 ~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~---------------~~~a~al~~I~~~~~vP-lvaDiH 92 (366)
T 3noy_A 29 DAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPH---------------KEDVEALEEIVKKSPMP-VIADIH 92 (366)
T ss_dssp TSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCS---------------HHHHHHHHHHHHHCSSC-EEEECC
T ss_pred CCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCC---------------hHHHHHHHHHHhcCCCC-EEEeCC
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 175 YALPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 175 ~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
|.. +-+..+++.+++-+++.|
T Consensus 93 f~~---------~lal~a~e~G~dklRINP 113 (366)
T 3noy_A 93 FAP---------SYAFLSMEKGVHGIRINP 113 (366)
T ss_dssp SCH---------HHHHHHHHTTCSEEEECH
T ss_pred CCH---------HHHHHHHHhCCCeEEECC
No 461
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=28.85 E-value=3.1e+02 Score=24.39 Aligned_cols=50 Identities=4% Similarity=-0.106 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 151 DSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 151 ~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.+.|+|.+.+
T Consensus 52 s~~Er~~v~~~~~~~~~g--r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 52 NHDEHADVVMMTLDLADG--RIPVIAGTGANATAEAISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp CHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEE
T ss_pred CHHHHHHHHHHHHHHhCC--CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 344444455544444 21 123456654555555555556666666665543
No 462
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.82 E-value=3.2e+02 Score=24.53 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=15.3
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCeEEE
Q psy2383 173 LIYALPNQTLSELMLDLNYAIQYSPPHLSL 202 (391)
Q Consensus 173 lI~GlPgqt~e~~~~~l~~~~~l~~~~is~ 202 (391)
+|.|.-+.+.++..+-.+.+.+.|+|.+.+
T Consensus 84 ViaGvg~~st~~ai~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 84 VIVGAGTNSTEKTLKLVKQAEKLGANGVLV 113 (306)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEcCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 455554445555555555555555554433
No 463
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=28.77 E-value=37 Score=30.90 Aligned_cols=61 Identities=7% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCC
Q psy2383 67 RKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138 (391)
Q Consensus 67 ~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~ 138 (391)
.+.+.|++-++.|+ .+.++++.+.+.... .+- ++|.....-..+.|+++|+++|++|...+
T Consensus 182 AGAd~i~~e~~~~~---~~~~~~i~~~~~~~~------P~i--~~~~~~~~~~~~eL~~lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 182 AGADAILMHSKKAD---PSDIEAFMKAWNNQG------PVV--IVPTKYYKTPTDHFRDMGVSMVIWANHNL 242 (295)
T ss_dssp TTCSEEEECCCSSS---SHHHHHHHHHHTTCS------CEE--ECCSTTTTSCHHHHHHHTCCEEEECSHHH
T ss_pred cCCCEEEEcCCCCC---HHHHHHHHHHcCCCC------CEE--EeCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 35788988655443 456777777664222 222 33432111127789999999999997553
No 464
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.72 E-value=37 Score=30.82 Aligned_cols=54 Identities=15% Similarity=0.329 Sum_probs=39.6
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEec
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGv 135 (391)
+++.|.+-- ++++.+++..+.++. .+.+|+.. .++.+.+..+++.|++.||+|-
T Consensus 218 GaD~I~LDn-----~~~~~l~~av~~~~~--------~v~ieaSG-GIt~~~i~~~a~tGVD~IsvGa 271 (287)
T 3tqv_A 218 KADIVMLDN-----FSGEDIDIAVSIARG--------KVALEVSG-NIDRNSIVAIAKTGVDFISVGA 271 (287)
T ss_dssp TCSEEEEES-----CCHHHHHHHHHHHTT--------TCEEEEES-SCCTTTHHHHHTTTCSEEECSH
T ss_pred CCCEEEEcC-----CCHHHHHHHHHhhcC--------CceEEEEC-CCCHHHHHHHHHcCCCEEEECh
Confidence 467787743 366778887776642 24555544 4889999999999999999984
No 465
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=28.71 E-value=1.3e+02 Score=27.28 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=35.4
Q ss_pred hhhcCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeE-EcCC
Q psy2383 329 LRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK-RNNK 369 (391)
Q Consensus 329 lr~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~-~~~~ 369 (391)
|...+++..+++.+++|++-..+.+.|+.|++.|+++ ...+
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g 57 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY 57 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecC
Confidence 4567889999999999999888999999999999996 4443
No 466
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=28.71 E-value=1.1e+02 Score=29.36 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=44.7
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC------HHH----HHHhHHCCCCEEEEecCC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE------IEK----FHSYSIIGINRLSIGIQS 137 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~------~e~----l~~l~~~Gv~risiGvqS 137 (391)
..+.||+-+|.| +.++++++.+.++..++.. -+.....| +++ ++. .+.|.++|++++++++..
T Consensus 279 gAD~if~e~~~~---~~eei~~f~~~v~~~~P~~---~La~n~sP-sf~w~~~~~~~~~~~f~~eL~~lG~~~v~~~l~~ 351 (429)
T 1f8m_A 279 FADLIWMETGTP---DLEAARQFSEAVKAEYPDQ---MLAYNCSP-SFNWKKHLDDATIAKFQKELAAMGFKFQFITLAG 351 (429)
T ss_dssp GCSEEEECCSSC---CHHHHHHHHHHHHTTCTTC---EEEEECCT-TSCHHHHCCHHHHHHHHHHHHHHTEEEEEETTHH
T ss_pred cCCEEEeCCCCC---CHHHHHHHHHHhcccCCCc---eeecCCCC-CCCcccccchhhHhHHHHHHHHcCCeEEEECcHH
Confidence 478898865555 5788999999998655532 23334456 344 332 567889999999998875
Q ss_pred CC
Q psy2383 138 FN 139 (391)
Q Consensus 138 ~~ 139 (391)
+.
T Consensus 352 ~r 353 (429)
T 1f8m_A 352 FH 353 (429)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 467
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=28.66 E-value=97 Score=26.72 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=33.5
Q ss_pred cCCCChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcC
Q psy2383 332 KDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNN 368 (391)
Q Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~ 368 (391)
..+++...+.+.+|.+.......|+.++..|++-+|+
T Consensus 166 ~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 4689999999999999887889999999999999884
No 468
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.54 E-value=1.2e+02 Score=23.21 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred HHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCC
Q psy2383 50 LEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANP 112 (391)
Q Consensus 50 ~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p 112 (391)
..++++.+...++.-+..+|..|+.-=|.-+-..++.+...++.+.+.-++..++++.++..|
T Consensus 9 ~~~i~~~~~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p 71 (119)
T 2kdx_A 9 VSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEK 71 (119)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHHGGGCTTTSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEEeehhccccHHHHHHHHHHHHhCChhhcCcEEEEEecc
Confidence 345555555544433445688888877788889999999999999876424455666666544
No 469
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=28.51 E-value=95 Score=26.82 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=61.2
Q ss_pred CeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhC
Q psy2383 68 KIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILG 147 (391)
Q Consensus 68 ~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~ 147 (391)
+++.+++-+.+..........+++..+++..+ ..+.+. -.--+.+.++.+.++|++.|.+|-..+.+
T Consensus 43 Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~----ipvi~~--ggI~~~~~~~~~~~~Gad~V~lg~~~l~~------- 109 (253)
T 1thf_D 43 GIDELVFLDITASVEKRKTMLELVEKVAEQID----IPFTVG--GGIHDFETASELILRGADKVSINTAAVEN------- 109 (253)
T ss_dssp TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCC----SCEEEE--SSCCSHHHHHHHHHTTCSEEEESHHHHHC-------
T ss_pred CCCEEEEECCchhhcCCcccHHHHHHHHHhCC----CCEEEe--CCCCCHHHHHHHHHcCCCEEEEChHHHhC-------
Confidence 35566665443322222233445555655432 344443 33346788999999999999998655421
Q ss_pred CCCCHHHHHHHHHHHHh-hcccceEeE----------ecCCCCCCHHHHHHHHHHHHhcCCCeEEEecc
Q psy2383 148 RTHDSKQAKYAIEIAKQ-YFNNFNLDL----------IYALPNQTLSELMLDLNYAIQYSPPHLSLYSL 205 (391)
Q Consensus 148 R~~~~~~~~~~i~~~~~-~~~~v~~dl----------I~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l 205 (391)
++.+.+.++.+.. .+. +.+|. +.|....+..+..+.++.+.+++++.|.+...
T Consensus 110 ----p~~~~~~~~~~g~~~i~-~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~ 173 (253)
T 1thf_D 110 ----PSLITQIAQTFGSQAVV-VAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSI 173 (253)
T ss_dssp ----THHHHHHHHHHCGGGEE-EEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEET
T ss_pred ----hHHHHHHHHHcCCCcEE-EEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEec
Confidence 1234444444322 111 33333 11221111123344556677889998866543
No 470
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=28.50 E-value=3.6e+02 Score=25.03 Aligned_cols=102 Identities=8% Similarity=0.027 Sum_probs=60.7
Q ss_pred CCCHHHHH----HhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEKFH----SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l~----~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
.+|.+.++ .+.+.|++.|.+.=-|+--.. -|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 76 ~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~-------Ls~eEr~~vi~~~ve~~~g--rvpViaGvg~~st~eai~l 146 (360)
T 4dpp_A 76 RFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQL-------MSWDEHIMLIGHTVNCFGG--SIKVIGNTGSNSTREAIHA 146 (360)
T ss_dssp SBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-------SCHHHHHHHHHHHHHHHTT--TSEEEEECCCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEecccccChhh-------CCHHHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHH
Confidence 46655444 455678888877543332221 2556666666666665 22 2346778766778888888
Q ss_pred HHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 189 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 189 l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
.+.+.+.|+|.+.+-+ |++. .|+.+...+.|..+.+
T Consensus 147 a~~A~~~Gadavlvv~-------PyY~-----k~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 147 TEQGFAVGMHAALHIN-------PYYG-----KTSIEGLIAHFQSVLH 182 (360)
T ss_dssp HHHHHHTTCSEEEEEC-------CCSS-----CCCHHHHHHHHHTTGG
T ss_pred HHHHHHcCCCEEEEcC-------CCCC-----CCCHHHHHHHHHHHHH
Confidence 8888888888776543 2222 2455666666654433
No 471
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=28.35 E-value=3.3e+02 Score=24.59 Aligned_cols=75 Identities=13% Similarity=0.007 Sum_probs=43.2
Q ss_pred HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHHHHHHHhcCCC
Q psy2383 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198 (391)
Q Consensus 120 l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~l~~~~~l~~~ 198 (391)
++.+.+.|++.|.+.=-|+--.. -|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-.+.+.++|+|
T Consensus 49 i~~li~~Gv~Gl~v~GtTGE~~~-------Ls~~Er~~v~~~~v~~~~g--rvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 49 VEWQITQGINGVSPVGTTGESPT-------LTHEEHKRIIELCVEQVAK--RVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp HHHHHHTTCSEEECSSTTTTGGG-------SCHHHHHHHHHHHHHHHTT--SSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCEEEeCccccCccc-------cCHHHHHHHHHHHHHHhCC--CCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 33444567777665432222111 2455666666666655 22 23456777666777777777777777777
Q ss_pred eEEEe
Q psy2383 199 HLSLY 203 (391)
Q Consensus 199 ~is~y 203 (391)
.+.+-
T Consensus 120 avlv~ 124 (315)
T 3si9_A 120 AVLVV 124 (315)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 76544
No 472
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=28.32 E-value=1.4e+02 Score=23.72 Aligned_cols=63 Identities=6% Similarity=0.034 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccCcccCCCeeEEEEeCCCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCC
Q psy2383 50 LEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPS 113 (391)
Q Consensus 50 ~~~l~~Ei~~~~~~~~~~~~~~i~~gGGtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~ 113 (391)
..++++.+...++.-+..+|..|++-=|..+-..++.++..++.+.+.- +..++++.++..|.
T Consensus 7 a~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~~~gt-~~e~A~L~i~~~p~ 69 (139)
T 3a43_A 7 ADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLFAGT-IAEGAEIEFVEEEA 69 (139)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHHHTTS-TTTTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHHHcCC-cccCCEEEEEecCC
Confidence 3455555555443334457899988888899999999999999998753 34566777766553
No 473
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=28.25 E-value=3.3e+02 Score=24.54 Aligned_cols=80 Identities=8% Similarity=-0.032 Sum_probs=44.3
Q ss_pred CCCHHHH----HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEKF----HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l----~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
++|.+.+ +.+.+.|++.|.+.=-|+--. .-|.++-.+.++.+.+. -. .+-+|.|.-+ +.++..+-
T Consensus 29 ~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~-------~Ls~eEr~~vi~~~~~~~~g--rvpViaGvg~-st~~ai~l 98 (314)
T 3d0c_A 29 EIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFY-------ALTIEEAKQVATRVTELVNG--RATVVAGIGY-SVDTAIEL 98 (314)
T ss_dssp CBCHHHHHHHHHHHHHTTCSEECTTSGGGTGG-------GSCHHHHHHHHHHHHHHHTT--SSEEEEEECS-SHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECcccCChh-------hCCHHHHHHHHHHHHHHhCC--CCeEEecCCc-CHHHHHHH
Confidence 4554433 334456777766532111111 12455555666666555 22 2346777766 77777777
Q ss_pred HHHHHhcCCCeEEEe
Q psy2383 189 LNYAIQYSPPHLSLY 203 (391)
Q Consensus 189 l~~~~~l~~~~is~y 203 (391)
.+.+.+.|+|.+.+-
T Consensus 99 a~~A~~~Gadavlv~ 113 (314)
T 3d0c_A 99 GKSAIDSGADCVMIH 113 (314)
T ss_dssp HHHHHHTTCSEEEEC
T ss_pred HHHHHHcCCCEEEEC
Confidence 777777887766443
No 474
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=28.12 E-value=3e+02 Score=23.94 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=36.6
Q ss_pred EEeeCCCC-CCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 107 TLEANPST-FEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 107 t~e~~p~~-l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
-.-..|+. .+.+.++.|.++|.+-|-+|+ | .+.+.+.+.+.++.+++.
T Consensus 12 i~~gDP~~~~t~~~~~~l~~~GaD~ielG~-S----------~Gvt~~~~~~~v~~ir~~ 60 (240)
T 1viz_A 12 VFKLDPNKDLPDEQLEILCESGTDAVIIGG-S----------DGVTEDNVLRMMSKVRRF 60 (240)
T ss_dssp EEEECTTSCCCHHHHHHHHTSCCSEEEECC---------------CHHHHHHHHHHHTTS
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECC-C----------CCCCHHHHHHHHHHhhCc
Confidence 33457765 588999999999999999999 2 567888888999888874
No 475
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=28.01 E-value=39 Score=29.13 Aligned_cols=104 Identities=9% Similarity=0.023 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy2383 86 GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY 165 (391)
Q Consensus 86 ~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~ 165 (391)
...+++..+++..+ ..+.+-. .-.+.+.++.+.++|++.|.+|..... +.+.+.+.++.....
T Consensus 64 ~~~~~i~~i~~~~~----ipvi~~g--~i~~~~~~~~~~~~Gad~V~i~~~~~~-----------~~~~~~~~~~~~g~~ 126 (253)
T 1h5y_A 64 TFIDSVKRVAEAVS----IPVLVGG--GVRSLEDATTLFRAGADKVSVNTAAVR-----------NPQLVALLAREFGSQ 126 (253)
T ss_dssp HHHHHHHHHHHHCS----SCEEEES--SCCSHHHHHHHHHHTCSEEEESHHHHH-----------CTHHHHHHHHHHCGG
T ss_pred ccHHHHHHHHHhcC----CCEEEEC--CCCCHHHHHHHHHcCCCEEEEChHHhh-----------CcHHHHHHHHHcCCC
Confidence 34455666766543 3344433 334677888888999999999953321 112233333332211
Q ss_pred -cccceEeE-------ecCCCC---CCHHHHHHHHHHHHhcCCCeEEEecccc
Q psy2383 166 -FNNFNLDL-------IYALPN---QTLSELMLDLNYAIQYSPPHLSLYSLTI 207 (391)
Q Consensus 166 -~~~v~~dl-------I~GlPg---qt~e~~~~~l~~~~~l~~~~is~y~l~~ 207 (391)
+. +.+|. .+-.++ ++..+..+.++.+.+.+++.|.+.+..+
T Consensus 127 ~i~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~ 178 (253)
T 1h5y_A 127 STV-VAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDR 178 (253)
T ss_dssp GEE-EEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTT
T ss_pred cEE-EEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccC
Confidence 11 33332 111222 1122334446777888999998876543
No 476
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=27.99 E-value=21 Score=22.77 Aligned_cols=12 Identities=33% Similarity=1.076 Sum_probs=9.5
Q ss_pred CCCCCCCCCccc
Q psy2383 28 KKCPYCDFHSYE 39 (391)
Q Consensus 28 ~~C~yC~~~~~~ 39 (391)
-+|.||+|....
T Consensus 24 IrCpyCGyrii~ 35 (48)
T 4ayb_P 24 VRCPYCGYKIIF 35 (48)
T ss_dssp SCCTTTCCSCEE
T ss_pred cccCccCcEEEE
Confidence 389999987665
No 477
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=27.90 E-value=29 Score=29.15 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=28.0
Q ss_pred HHH----HHHHHHHCCCeEEcC--------CeEEeCcchHHHHHHHHH
Q psy2383 351 IES----KLKNAEKLGLLKRNN--------KNIKPTSFGRYFLNDLQQ 386 (391)
Q Consensus 351 ~~~----~l~~l~~~gl~~~~~--------~~~~lT~~G~~~~~~i~~ 386 (391)
+.. .++.|++.||++..+ ..+.+|++|+-.....+.
T Consensus 47 iY~~~~~~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~~~l~ 94 (180)
T 2rkh_A 47 SLELMGISIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHSLLT 94 (180)
T ss_dssp CGGGTTCCTHHHHHTTSEECCC--------CEEEECHHHHHHHHHHHS
T ss_pred CchhHHHHHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHHHHHH
Confidence 467 899999999995433 449999999987765543
No 478
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=27.85 E-value=3.4e+02 Score=24.50 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=59.8
Q ss_pred CCCHHHHH----HhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEKFH----SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l~----~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
.+|.+.++ .+.+.|++.|.+.=-|+--. .-|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 40 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-------~Ls~~Er~~v~~~~v~~~~g--rvpViaGvg~~st~eai~l 110 (314)
T 3qze_A 40 RLDWDSLAKLVDFHLQEGTNAIVAVGTTGESA-------TLDVEEHIQVIRRVVDQVKG--RIPVIAGTGANSTREAVAL 110 (314)
T ss_dssp CBCHHHHHHHHHHHHHHTCCEEEESSGGGTGG-------GCCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccChh-------hCCHHHHHHHHHHHHHHhCC--CCcEEEeCCCcCHHHHHHH
Confidence 45555444 35556888877643222211 13566666666666665 22 2446778766777888888
Q ss_pred HHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 189 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 189 l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
.+.+.++|+|.+.+-+ |.+. .|+.+...+.|..+.+
T Consensus 111 a~~A~~~Gadavlv~~-------P~y~-----~~s~~~l~~~f~~va~ 146 (314)
T 3qze_A 111 TEAAKSGGADACLLVT-------PYYN-----KPTQEGMYQHFRHIAE 146 (314)
T ss_dssp HHHHHHTTCSEEEEEC-------CCSS-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcC-------CCCC-----CCCHHHHHHHHHHHHH
Confidence 8888888888775543 2222 2455655565554443
No 479
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=27.81 E-value=34 Score=29.94 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=39.0
Q ss_pred HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCC------CHHHHHHHH
Q psy2383 117 IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ------TLSELMLDL 189 (391)
Q Consensus 117 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgq------t~e~~~~~l 189 (391)
++.++.++++|++.|.+......+. .+..+..+..+.++++ +.-.++..-.++.+. +.+.+++.+
T Consensus 19 ~~~l~~~~~~G~~~vEl~~~~~~~~--------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (281)
T 3u0h_A 19 VLYLDLARETGYRYVDVPFHWLEAE--------AERHGDAAVEAMFQRRGLVLANLGLPLNLYDSEPVFLRELSLLPDRA 90 (281)
T ss_dssp HHHHHHHHHTTCSEECCCHHHHHHH--------HHHHCHHHHHHHHHTTTCEECCEECCSCTTSCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCCEEEecHHHHHHH--------hcccCHHHHHHHHHHcCCceEEecccccccCCCHHHHHHHHHHHHHH
Confidence 5677788888888777765432110 0112233444445555 431222221222221 122345567
Q ss_pred HHHHhcCCCeEEE
Q psy2383 190 NYAIQYSPPHLSL 202 (391)
Q Consensus 190 ~~~~~l~~~~is~ 202 (391)
+.+.++|++.|.+
T Consensus 91 ~~A~~lG~~~v~~ 103 (281)
T 3u0h_A 91 RLCARLGARSVTA 103 (281)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 7777788877764
No 480
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=27.81 E-value=13 Score=33.54 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCChhHHHHHh-CCCHHHHHHHHHHHHHCCCeE--EcCCeEEeCcc
Q psy2383 333 DGFSPNLFFERT-GINIKIIESKLKNAEKLGLLK--RNNKNIKPTSF 376 (391)
Q Consensus 333 ~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~gl~~--~~~~~~~lT~~ 376 (391)
+|++...+.+++ +.+..++...++.|..+|.|. .|++.++.|+.
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd~h~k~t~~ 269 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDA 269 (270)
T ss_dssp -----------------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccccceeeccC
Confidence 788888888877 556567889999999999995 56788888753
No 481
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=27.74 E-value=49 Score=30.44 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=38.7
Q ss_pred CCChhHHHHHhCCC---HHHHHHHHHHHHHCCCeEEc---CCeEEeCcchHHHH
Q psy2383 334 GFSPNLFFERTGIN---IKIIESKLKNAEKLGLLKRN---NKNIKPTSFGRYFL 381 (391)
Q Consensus 334 g~~~~~~~~~~~~~---~~~~~~~l~~l~~~gl~~~~---~~~~~lT~~G~~~~ 381 (391)
+++.+++.+..|.+ ...+...|..|...|+++.+ ++.+.+|+.+..+.
T Consensus 51 ~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~L~ 104 (352)
T 1fp2_A 51 PISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLV 104 (352)
T ss_dssp CEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTS
T ss_pred CccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHHHh
Confidence 57788899999984 44567889999999999987 58999998766543
No 482
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=27.74 E-value=1.4e+02 Score=25.10 Aligned_cols=44 Identities=9% Similarity=0.192 Sum_probs=36.8
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEcCCeEEeCcchHH
Q psy2383 335 FSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRY 379 (391)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~~~~~~lT~~G~~ 379 (391)
+..+.++...|...+.+...+..|.+.|+ ..+++++.+.+.-.+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I~d~~~L 222 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEIEDIALL 222 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEESCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEEcCHHHH
Confidence 45678999999999889999999999996 778899999865443
No 483
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=27.65 E-value=1.2e+02 Score=26.39 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=32.2
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeCc
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPTS 375 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT~ 375 (391)
+...+.+.||++...+...++.|+.+|++... +....+++
T Consensus 36 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 76 (243)
T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSK 76 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCeEEEeC
Confidence 46678899999988889999999999999875 44455553
No 484
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=27.53 E-value=1e+02 Score=27.31 Aligned_cols=15 Identities=0% Similarity=-0.026 Sum_probs=7.0
Q ss_pred HHHHhHHCCCCEEEE
Q psy2383 119 KFHSYSIIGINRLSI 133 (391)
Q Consensus 119 ~l~~l~~~Gv~risi 133 (391)
..+.+++.|+.-.++
T Consensus 73 ~~~~l~~~gl~i~~~ 87 (296)
T 2g0w_A 73 MLRILDEHNMKVTEV 87 (296)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCceEee
Confidence 334455555544443
No 485
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=27.46 E-value=1.6e+02 Score=25.79 Aligned_cols=92 Identities=10% Similarity=0.141 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q psy2383 83 SDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIA 162 (391)
Q Consensus 83 ~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~ 162 (391)
..+.+..++..+++ .++++|+=++| +.+.++.-++.|.++|.+--..+-+..- ...+..-.+.+.++.+.+
T Consensus 112 ~~~~l~~~i~~L~~-----~GIrVSLFIDp---d~~qi~aA~~~GA~~IELhTG~Ya~a~~-~~~~~~el~~i~~aa~~A 182 (243)
T 1m5w_A 112 QRDKMRDACKRLAD-----AGIQVSLFIDA---DEEQIKAAAEVGAPFIEIHTGCYADAKT-DAEQAQELARIAKAATFA 182 (243)
T ss_dssp GHHHHHHHHHHHHH-----TTCEEEEEECS---CHHHHHHHHHTTCSEEEEECHHHHHCCS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-----CCCEEEEEeCC---CHHHHHHHHHhCcCEEEEechhhhcCCC-chhHHHHHHHHHHHHHHH
Confidence 44456666666654 36788988888 5899999999999999986543332200 000001223344555555
Q ss_pred HhhcccceEeEecCCCCCCHHHH
Q psy2383 163 KQYFNNFNLDLIYALPNQTLSEL 185 (391)
Q Consensus 163 ~~~~~~v~~dlI~GlPgqt~e~~ 185 (391)
++. .+.+.-=-||--++...+
T Consensus 183 ~~l--GL~VnAGHgL~y~Nv~~i 203 (243)
T 1m5w_A 183 ASL--GLKVNAGHGLTYHNVKAI 203 (243)
T ss_dssp HHT--TCEEEEESSCCTTTHHHH
T ss_pred HHc--CCEEecCCCCCHHHHHHH
Confidence 554 133444557766666555
No 486
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=27.40 E-value=3.3e+02 Score=24.27 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=63.1
Q ss_pred CCCHHH----HHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEK----FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~----l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
++|.+. ++.+.+.|++.|.+.=-|+--.. .|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 24 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-------Ls~~Er~~v~~~~~~~~~g--rvpviaGvg~~~t~~ai~l 94 (297)
T 3flu_A 24 SIHYEQLRDLIDWHIENGTDGIVAVGTTGESAT-------LSVEEHTAVIEAVVKHVAK--RVPVIAGTGANNTVEAIAL 94 (297)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-------SCHHHHHHHHHHHHHHHTT--SSCEEEECCCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCccccCccc-------CCHHHHHHHHHHHHHHhCC--CCcEEEeCCCcCHHHHHHH
Confidence 455544 44455678888877543432222 3566777777777666 32 2446788866788888888
Q ss_pred HHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHH
Q psy2383 189 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITS 236 (391)
Q Consensus 189 l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~ 236 (391)
.+.+.++|+|.+.+-+ |.+. .|+.+...+.|..+.+
T Consensus 95 a~~a~~~Gadavlv~~-------P~y~-----~~~~~~l~~~f~~va~ 130 (297)
T 3flu_A 95 SQAAEKAGADYTLSVV-------PYYN-----KPSQEGIYQHFKTIAE 130 (297)
T ss_dssp HHHHHHTTCSEEEEEC-------CCSS-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECC-------CCCC-----CCCHHHHHHHHHHHHH
Confidence 8888899988876543 2222 2455666666654443
No 487
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=27.31 E-value=44 Score=31.08 Aligned_cols=48 Identities=6% Similarity=0.179 Sum_probs=39.1
Q ss_pred CCChhHHHHHhCC--CHH---HHHHHHHHHHHCCCeEEc---------CCeEEeCcchHHHH
Q psy2383 334 GFSPNLFFERTGI--NIK---IIESKLKNAEKLGLLKRN---------NKNIKPTSFGRYFL 381 (391)
Q Consensus 334 g~~~~~~~~~~~~--~~~---~~~~~l~~l~~~gl~~~~---------~~~~~lT~~G~~~~ 381 (391)
+++.+++.++.|. +.. .+...|..|...|+++.+ ++++.+|+.+..+.
T Consensus 56 ~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 117 (364)
T 3p9c_A 56 SLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLT 117 (364)
T ss_dssp CBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSS
T ss_pred CCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHc
Confidence 5788999999986 543 467889999999999986 46899999887764
No 488
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=27.30 E-value=3.4e+02 Score=24.32 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=61.9
Q ss_pred CCCHHHH----HHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecCCCCCCHHHHHHH
Q psy2383 114 TFEIEKF----HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 114 ~l~~e~l----~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
.+|.+.+ +.+.+.|++.|.+.=-|+--.. -|.++-.+.++.+.+. -. .+-+|.|.-+.+.++..+-
T Consensus 28 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-------Ls~eEr~~v~~~~~~~~~g--rvpViaGvg~~~t~~ai~l 98 (303)
T 2wkj_A 28 ALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFV-------QSLSEREQVLEIVAEEAKG--KIKLIAHVGCVSTAESQQL 98 (303)
T ss_dssp SBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-------SCHHHHHHHHHHHHHHHTT--TSEEEEECCCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECeeccChhh-------CCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHH
Confidence 4555444 4445678888776433322111 3556666667666665 22 2446778866677777788
Q ss_pred HHHHHhcCCCeEEEecccccCCCcccCCCCCCCCCHHHHHHHHHHHHHH
Q psy2383 189 LNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSL 237 (391)
Q Consensus 189 l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~~~p~~~~~~~~~~~~~~~ 237 (391)
.+.+.++|+|.+.+-+ |.+. .|+.+...+.|..+.+.
T Consensus 99 a~~A~~~Gadavlv~~-------P~y~-----~~s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 99 AASAKRYGFDAVSAVT-------PFYY-----PFSFEEHCDHYRAIIDS 135 (303)
T ss_dssp HHHHHHHTCSEEEEEC-------CCSS-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEecC-------CCCC-----CCCHHHHHHHHHHHHHh
Confidence 8888888888775543 2222 24566666666655544
No 489
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=27.29 E-value=1.6e+02 Score=24.33 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=54.8
Q ss_pred CCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCCCCHHHHHHHHHHHH
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAI 193 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~l~~~~ 193 (391)
..++..++.+++.|...+.-.+.|.|-. ..+.+++.+.++ +. .+-.+-||-..+.+|.+.+.+-|+.+.
T Consensus 105 ~~~~~~~~~~~~~G~~~v~w~~d~~Dw~-------~~~~~~i~~~~~---~~-~~g~IiL~Hd~~~~t~~al~~ii~~l~ 173 (195)
T 2cc0_A 105 ETNATLRSVEAKYGLTEVIWDVDSQDWN-------NASTDAIVQAVS---RL-GNGQVILMHDWPANTLAAIPRIAQTLA 173 (195)
T ss_dssp CCCHHHHHHHHHTTCEECCCSEECCGGG-------TCCHHHHHHHHH---TC-CTTCEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHCCCeEEEeccCCCccC-------CCCHHHHHHHHh---Cc-CcCeEEEECCCchhHHHHHHHHHHHHH
Confidence 4578899999999997776666665432 235666655542 22 113455666666678888888999999
Q ss_pred hcCCCeEEEeccc
Q psy2383 194 QYSPPHLSLYSLT 206 (391)
Q Consensus 194 ~l~~~~is~y~l~ 206 (391)
+.|..-+.+-.++
T Consensus 174 ~~Gy~~v~l~~~~ 186 (195)
T 2cc0_A 174 GKGLCSGMISPQT 186 (195)
T ss_dssp HTTEEECEECTTT
T ss_pred HCCCEEEEeCccc
Confidence 9886655555544
No 490
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=27.26 E-value=1.3e+02 Score=27.15 Aligned_cols=101 Identities=9% Similarity=0.142 Sum_probs=65.5
Q ss_pred CCeeEEEEeCCC--CCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCCCEEEEecCCCCHHH
Q psy2383 67 RKIHTIFIGGGT--PSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGINRLSIGIQSFNNKY 142 (391)
Q Consensus 67 ~~~~~i~~gGGt--ps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv~risiGvqS~~~~~ 142 (391)
.+++.+++.|.| ...|+.++-.++++.+.+..+ ....+-+-+...+. +-+..+..+++|++.+.+-.-.+...
T Consensus 47 ~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~--gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~- 123 (307)
T 3s5o_A 47 FPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP--KNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRG- 123 (307)
T ss_dssp SCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC--TTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGG-
T ss_pred cCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC--CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCC-
Confidence 368999999844 556788888999999888643 34555554432222 23555667788999999876554420
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhh--cccceEeEecCCCCC
Q psy2383 143 LNILGRTHDSKQAKYAIEIAKQY--FNNFNLDLIYALPNQ 180 (391)
Q Consensus 143 l~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgq 180 (391)
..+.+.+.+-.+.+.++ ++ + ++|..|+-
T Consensus 124 ------~~s~~~l~~~f~~ia~a~~lP---i-ilYn~P~~ 153 (307)
T 3s5o_A 124 ------RMSSAALIHHYTKVADLSPIP---V-VLYSVPAN 153 (307)
T ss_dssp ------GCCHHHHHHHHHHHHHHCSSC---E-EEEECHHH
T ss_pred ------CCCHHHHHHHHHHHHhhcCCC---E-EEEeCCcc
Confidence 13556676666666665 44 3 57788853
No 491
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=27.20 E-value=1.2e+02 Score=26.29 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=31.0
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHHCCCeEEc-CCeEEeC
Q psy2383 336 SPNLFFERTGINIKIIESKLKNAEKLGLLKRN-NKNIKPT 374 (391)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~l~~~gl~~~~-~~~~~lT 374 (391)
+-.++++.||++-..+...++.|+.+|++... +....++
T Consensus 31 se~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g~G~~V~ 70 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVR 70 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCceEEEe
Confidence 45678889999887889999999999999865 4444444
No 492
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=27.20 E-value=3.5e+02 Score=24.42 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=60.1
Q ss_pred cEEEEeeCCC-CCC-----HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhh-cccceEeEecC
Q psy2383 104 ISITLEANPS-TFE-----IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYA 176 (391)
Q Consensus 104 ~eit~e~~p~-~l~-----~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~-~~~v~~dlI~G 176 (391)
..+|+|.-|- +.+ .+.++.|+..+++.||+-- .+ .+.+.....++...+++. ++ +-..+-..
T Consensus 13 ~~~S~E~~PPk~~~~~~~l~~~~~~L~~~~pd~vsVT~---~~-------~g~~r~~t~~~a~~i~~~g~~-~i~Hltc~ 81 (310)
T 3apt_A 13 PLFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GA-------MGSTRERSVAWAQRIQSLGLN-PLAHLTVA 81 (310)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHHGGGCCSEEEECC---CS-------TTCSHHHHHHHHHHHHHTTCC-BCEEEECT
T ss_pred cEEEEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEec---CC-------CCCcchhHHHHHHHHHHhCCC-eEEEeecC
Confidence 4699999775 321 3456667778889999843 11 122444555666777755 55 55666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEec
Q psy2383 177 LPNQTLSELMLDLNYAIQYSPPHLSLYS 204 (391)
Q Consensus 177 lPgqt~e~~~~~l~~~~~l~~~~is~y~ 204 (391)
+-|.+++.+.|..+.++|+++|-+-.
T Consensus 82 --~~~~~~l~~~L~~~~~~GI~niLaLr 107 (310)
T 3apt_A 82 --GQSRKEVAEVLHRFVESGVENLLALR 107 (310)
T ss_dssp --TSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred --CCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 68999999999999999999875443
No 493
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=27.16 E-value=50 Score=31.21 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=40.4
Q ss_pred HHHHHhHHCCCCEEEEec--C-----CCCHHHHHHhC--CCCCHHHHHHHHHHHHhh-cccceEeEecCCCC
Q psy2383 118 EKFHSYSIIGINRLSIGI--Q-----SFNNKYLNILG--RTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPN 179 (391)
Q Consensus 118 e~l~~l~~~Gv~risiGv--q-----S~~~~~l~~l~--R~~~~~~~~~~i~~~~~~-~~~v~~dlI~GlPg 179 (391)
++|+.|+++||+.|-+.. + -.++.-...++ +-.+.+++.+.++.|++. +. |-+|++++.-+
T Consensus 25 ~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~-VilD~V~NH~~ 95 (405)
T 1ht6_A 25 GKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQ-AIADIVINHRC 95 (405)
T ss_dssp TTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCE-EEEEECCSBCC
T ss_pred HHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCE-EEEEECcCccc
Confidence 355666677777666531 1 12222223333 346899999999999999 87 99999988543
No 494
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=27.04 E-value=1.7e+02 Score=25.91 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=40.5
Q ss_pred CCChhHHHHHhCCCHHHHHHHHHH-HHHCCCeEEcCCeEEeCcchHHHHH
Q psy2383 334 GFSPNLFFERTGINIKIIESKLKN-AEKLGLLKRNNKNIKPTSFGRYFLN 382 (391)
Q Consensus 334 g~~~~~~~~~~~~~~~~~~~~l~~-l~~~gl~~~~~~~~~lT~~G~~~~~ 382 (391)
.++.+...+..|.+...+...++. +++.|++...+..-.+|++|.-+++
T Consensus 264 ~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 264 PVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLG 313 (324)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTT
T ss_pred CchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHh
Confidence 356888888999987777666665 8899999999999999999988764
No 495
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=27.04 E-value=3.7e+02 Score=24.64 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHhccCcccCCCeeEEEEeCCCCC------------CCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCCC------
Q psy2383 55 IDVELSLPIILNRKIHTIFIGGGTPS------------LISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFE------ 116 (391)
Q Consensus 55 ~Ei~~~~~~~~~~~~~~i~~gGGtps------------~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~------ 116 (391)
+++...+......+++.|-+..|.|. .-.++.+.++++.+++.. +..+++-.++...+
T Consensus 70 ~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v----~~PV~vKiR~g~~~~~~~~~ 145 (350)
T 3b0p_A 70 KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV----RVPVTVKMRLGLEGKETYRG 145 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC----SSCEEEEEESCBTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh----CCceEEEEecCcCccccHHH
Q ss_pred -HHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCCCCHHH-------HHHHHHHHHhhcccceEeEecCCCCCCHHHHHHH
Q psy2383 117 -IEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQ-------AKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLD 188 (391)
Q Consensus 117 -~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~~~~~~-------~~~~i~~~~~~~~~v~~dlI~GlPgqt~e~~~~~ 188 (391)
.+.++.+.++|++.|.+.--+... +++... ..+.+..+++.++++-+-.--|+ .|.++..+.
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~r~~~~--------g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI--~s~eda~~~ 215 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHARSALL--------ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGI--RSLEEALFH 215 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCBC------------------CCCCCHHHHHHHHHHCTTSEEEEESSC--CSHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCchhc--------ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCc--CCHHHHHHH
Q ss_pred HHHHHhcCCCeEEE
Q psy2383 189 LNYAIQYSPPHLSL 202 (391)
Q Consensus 189 l~~~~~l~~~~is~ 202 (391)
++ ++|-|.+
T Consensus 216 l~-----GaD~V~i 224 (350)
T 3b0p_A 216 LK-----RVDGVML 224 (350)
T ss_dssp HT-----TSSEEEE
T ss_pred Hh-----CCCEEEE
No 496
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=26.85 E-value=62 Score=28.70 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEecccccC
Q psy2383 180 QTLSELMLDLNYAIQYSPPHLSLYSLTIEP 209 (391)
Q Consensus 180 qt~e~~~~~l~~~~~l~~~~is~y~l~~~p 209 (391)
+-.+.+++.++++.++|+.++++|.++.+-
T Consensus 45 ~G~~~l~~i~~~c~~lGI~~lTlYaFStEN 74 (253)
T 3sgv_B 45 AGAKSVRRAVSFAANNGIEALTLYAFSSEN 74 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECC----
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEchhc
Confidence 356788999999999999999999998553
No 497
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=26.81 E-value=1.1e+02 Score=23.84 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=36.0
Q ss_pred cCCCChhHHHHHhC----CCHHHHHHHHHHHHHCCCeEEcC----CeEE--eCcchH
Q psy2383 332 KDGFSPNLFFERTG----INIKIIESKLKNAEKLGLLKRNN----KNIK--PTSFGR 378 (391)
Q Consensus 332 ~~g~~~~~~~~~~~----~~~~~~~~~l~~l~~~gl~~~~~----~~~~--lT~~G~ 378 (391)
..++....+.+..+ ++...+...|+.|++.|||.... ..+. +|++|.
T Consensus 22 ~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 22 TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 36788889998887 56667889999999999998653 2343 677774
No 498
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=26.73 E-value=98 Score=23.37 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCeEEc----CCeEEeCcchHHHHHHH
Q psy2383 351 IESKLKNAEKLGLLKRN----NKNIKPTSFGRYFLNDL 384 (391)
Q Consensus 351 ~~~~l~~l~~~gl~~~~----~~~~~lT~~G~~~~~~i 384 (391)
+...++.|...|++... ---|.||++|.-++..-
T Consensus 42 Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~y 79 (105)
T 3u5c_K 42 VIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREY 79 (105)
T ss_dssp HHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHH
T ss_pred HHHHHhcccccceeccEecceEEEEEEchhhHHHHHHH
Confidence 46789999999999876 35699999999888754
No 499
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=26.64 E-value=2.5e+02 Score=25.44 Aligned_cols=120 Identities=5% Similarity=-0.093 Sum_probs=75.1
Q ss_pred CCCHHHHHHhHHCCCCEEEEecCCCCHHHHHHhCCC----CCHHHHHHHHHHHHhh---cccceEeEecCCCCCCHHHHH
Q psy2383 114 TFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRT----HDSKQAKYAIEIAKQY---FNNFNLDLIYALPNQTLSELM 186 (391)
Q Consensus 114 ~l~~e~l~~l~~~Gv~risiGvqS~~~~~l~~l~R~----~~~~~~~~~i~~~~~~---~~~v~~dlI~GlPgqt~e~~~ 186 (391)
..|.-..+.+.++|+.-|-++ .+.-.-..+|.+ .|.+++...++.+.+. .+ +.+|+=+|+ | +.+++.
T Consensus 25 a~D~~sA~l~e~aGf~ai~vs---G~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~P-viaD~d~Gy-g-~~~~v~ 98 (302)
T 3fa4_A 25 VYDGLSARVALSAGFDALYMT---GAGTAASVHGQADLGICTLNDMRANAEMISNISPSTP-VIADADTGY-G-GPIMVA 98 (302)
T ss_dssp ECSHHHHHHHHTTTCSCEEEC---HHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSC-EEEECTTTT-S-SHHHHH
T ss_pred CcCHHHHHHHHHcCCCEEEeC---cHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCC-EEEECCCCC-C-CHHHHH
Confidence 356777778888999988772 111112335554 4778877777777664 55 889999997 5 588899
Q ss_pred HHHHHHHhcCCCeEEEecccccC-CCcccCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q psy2383 187 LDLNYAIQYSPPHLSLYSLTIEP-NTYFFKYPPLSMPSNDENAVMQDKITSLLKNNY 242 (391)
Q Consensus 187 ~~l~~~~~l~~~~is~y~l~~~p-gT~l~~~~~~~~p~~~~~~~~~~~~~~~L~~~G 242 (391)
++++.+.+.|+.-|.+=.-...+ ..-+ ....+-+.++..+....+++.-.+.|
T Consensus 99 ~tv~~l~~aGaagv~iEDq~~~Krcgh~---~gk~l~~~~e~~~rI~Aa~~A~~~~~ 152 (302)
T 3fa4_A 99 RTTEQYSRSGVAAFHIEDQVQTKRCGHL---AGKILVDTDTYVTRIRAAVQARQRIG 152 (302)
T ss_dssp HHHHHHHHTTCCEEEECSBCCC----------CCCBCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEECCCCCCcccCCC---CCCeecCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888654322100 0000 01134456666666666666654333
No 500
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=26.58 E-value=1.2e+02 Score=27.48 Aligned_cols=112 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHhccCcccCCCeeEEEEeC--CCCCCCCHHHHHHHHHHHHHhCCCCCCcEEEEeeCCCCC--CHHHHHHhHHCCC-C
Q psy2383 55 IDVELSLPIILNRKIHTIFIGG--GTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTF--EIEKFHSYSIIGI-N 129 (391)
Q Consensus 55 ~Ei~~~~~~~~~~~~~~i~~gG--Gtps~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~Gv-~ 129 (391)
+.++...+++-..+++.++..| |....|+.++-.++++.+.+. ......+-+-+...+. +-+..+..+++|. +
T Consensus 28 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~--~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~d 105 (311)
T 3h5d_A 28 DAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKV--VNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFA 105 (311)
T ss_dssp THHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHH--SCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH--hCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCc
Q ss_pred EEEEecCCCCHHHHHHhCCCCCHHHHHHHHHHHHhhcccceEeEecCCCC
Q psy2383 130 RLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPN 179 (391)
Q Consensus 130 risiGvqS~~~~~l~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 179 (391)
.+.+-.-.+..- +.+.+.+-.+.+.++.+ +-+ ++|..|+
T Consensus 106 avlv~~P~y~~~---------s~~~l~~~f~~va~a~~-lPi-ilYn~P~ 144 (311)
T 3h5d_A 106 AGLAIVPYYNKP---------SQEGMYQHFKAIADASD-LPI-IIYNIPG 144 (311)
T ss_dssp EEEEECCCSSCC---------CHHHHHHHHHHHHHSCS-SCE-EEEECHH
T ss_pred EEEEcCCCCCCC---------CHHHHHHHHHHHHHhCC-CCE-EEEeccc
Done!