Your job contains 1 sequence.
>psy2383
MKYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELS
LPIILNRKIHTIFIGGGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKF
HSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQ
TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKN
NYYKNYEISAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYL
KNIFSGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEK
LGLLKRNNKNIKPTSFGRYFLNDLQQIFLNN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2383
(391 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_0597 - symbol:CBU_0597 "oxygen-independent c... 835 2.4e-83 1
UNIPROTKB|Q8K928 - symbol:BUsg_532 "Oxygen-independent co... 823 4.5e-82 1
TIGR_CMR|CPS_3668 - symbol:CPS_3668 "putative oxygen-inde... 799 1.6e-79 1
UNIPROTKB|Q8EBY6 - symbol:yggW "Radical SAM superfamily p... 798 2.0e-79 1
TIGR_CMR|SO_3359 - symbol:SO_3359 "oxygen-independent cop... 798 2.0e-79 1
UNIPROTKB|P52062 - symbol:yggW "predicted oxidoreductase"... 761 1.7e-75 1
UNIPROTKB|Q9KUR0 - symbol:VC_0455 "Oxygen-independent cop... 755 7.3e-75 1
TIGR_CMR|VC_0455 - symbol:VC_0455 "oxygen-independent cop... 755 7.3e-75 1
TIGR_CMR|SPO_0006 - symbol:SPO_0006 "oxygen-independent c... 521 4.6e-50 1
TIGR_CMR|GSU_0030 - symbol:GSU_0030 "oxygen-independent c... 487 1.8e-46 1
TIGR_CMR|DET_0858 - symbol:DET_0858 "oxygen-independent c... 483 4.8e-46 1
TIGR_CMR|BA_4542 - symbol:BA_4542 "oxygen-independent cop... 451 1.2e-42 1
ZFIN|ZDB-GENE-030131-2508 - symbol:rsad1 "radical S-adeno... 444 6.6e-42 1
TAIR|locus:2161897 - symbol:AT5G63290 species:3702 "Arabi... 363 2.5e-41 2
TIGR_CMR|CHY_0411 - symbol:CHY_0411 "putative oxygen-inde... 435 5.9e-41 1
UNIPROTKB|A5D7B1 - symbol:RSAD1 "Radical S-adenosyl methi... 422 1.4e-39 1
UNIPROTKB|G5E5Q7 - symbol:RSAD1 "Radical S-adenosyl methi... 422 1.4e-39 1
MGI|MGI:3039628 - symbol:Rsad1 "radical S-adenosyl methio... 419 2.9e-39 1
UNIPROTKB|F1RT95 - symbol:RSAD1 "Uncharacterized protein"... 411 2.1e-38 1
DICTYBASE|DDB_G0280411 - symbol:DDB_G0280411 "radical S-a... 408 4.3e-38 1
UNIPROTKB|Q9HA92 - symbol:RSAD1 "Radical S-adenosyl methi... 404 1.1e-37 1
TIGR_CMR|CJE_0683 - symbol:CJE_0683 "oxygen-independent c... 394 1.3e-36 1
UNIPROTKB|Q9KVM5 - symbol:VC_0116 "Oxygen-independent cop... 283 2.2e-24 1
TIGR_CMR|VC_0116 - symbol:VC_0116 "oxygen-independent cop... 283 2.2e-24 1
UNIPROTKB|P32131 - symbol:hemN "coproporphyrinogen III de... 270 4.9e-22 1
TIGR_CMR|SO_4520 - symbol:SO_4520 "oxygen-independent cop... 257 3.3e-20 1
TIGR_CMR|CPS_4823 - symbol:CPS_4823 "oxygen-independent c... 240 5.3e-18 1
TIGR_CMR|CJE_0412 - symbol:CJE_0412 "radical SAM domain p... 228 1.5e-16 1
TIGR_CMR|SO_4730 - symbol:SO_4730 "oxygen-independent cop... 218 2.3e-15 1
TIGR_CMR|CJE_1072 - symbol:CJE_1072 "oxygen-independent c... 216 3.7e-15 1
UNIPROTKB|Q9KL39 - symbol:VCA0909 "Oxygen-independent cop... 215 5.0e-15 1
TIGR_CMR|VC_A0909 - symbol:VC_A0909 "hutW protein" specie... 215 5.0e-15 1
TIGR_CMR|BA_0875 - symbol:BA_0875 "oxygen-independent cop... 200 3.3e-13 1
TIGR_CMR|SPO_3532 - symbol:SPO_3532 "oxygen-independent c... 184 1.8e-11 1
>TIGR_CMR|CBU_0597 [details] [associations]
symbol:CBU_0597 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:227377 "Coxiella burnetii RSA 493"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
OMA:CEHNLNY HOGENOM:HOG000015379 RefSeq:NP_819627.1
ProteinModelPortal:Q83DU5 GeneID:1208482 KEGG:cbu:CBU_0597
PATRIC:17929887 ProtClustDB:CLSK914174
BioCyc:CBUR227377:GJ7S-599-MONOMER Uniprot:Q83DU5
Length = 375
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 168/370 (45%), Positives = 233/370 (62%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLS YIH PWCI+KCPYCDF+S+ + +++ E+ Y+ AL+ ++ + +I R IHTIFIG
Sbjct: 5 PLSFYIHMPWCIRKCPYCDFNSHALHQDLPEEAYINALINELRQQIALIEKRPIHTIFIG 64
Query: 76 GGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTPSL S T ITLEANP + E KF Y IGINRLSIG+
Sbjct: 65 GGTPSLFSQTAYQKLFEEIKKQCLLKKEVEITLEANPGSVEQTKFRGYREIGINRLSIGV 124
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
QSF N L +LGR H +++AK AI IAKQ F N N+DL++ LP+Q ++E + DL A+
Sbjct: 125 QSFQNDKLKVLGRIHSAEEAKQAINIAKQAGFENINVDLMFGLPDQKVNEALDDLQTALD 184
Query: 195 YSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKT 254
P HLS Y LT+EPNT+F+K+PP ++P++D +Q K LL+ + + +YE+SAYS++
Sbjct: 185 LEPTHLSWYQLTLEPNTFFYKHPP-ALPTDDYIWEIQSKGRKLLRRDGFAHYEVSAYSRS 243
Query: 255 GYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKK 314
QHN+NYW+FGDYLG+GAG+HSKL+ I R KNP Y+ I +
Sbjct: 244 NRFCQHNINYWEFGDYLGLGAGAHSKLTIQGKITRYWNIKNPRFYMDA--QKPFIEGRQT 301
Query: 315 IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374
+ L EFM+NALRL+ LF ERTG++ ++ L+ A++ LL+ +NK + T
Sbjct: 302 LAPNELPLEFMMNALRLQKPIPLTLFTERTGLSPSVLVPWLETAKERNLLQCDNKYLTVT 361
Query: 375 SFGRYFLNDL 384
G FLN+L
Sbjct: 362 PLGHRFLNEL 371
>UNIPROTKB|Q8K928 [details] [associations]
symbol:BUsg_532 "Oxygen-independent coproporphyrinogen-III
oxidase-like protein BUsg_532" species:198804 "Buchnera aphidicola
str. Sg (Schizaphis graminum)" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:AE013218 GenomeReviews:AE013218_GR GO:GO:0051539
GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 TIGRFAMs:TIGR00539 RefSeq:NP_660862.1
ProteinModelPortal:Q8K928 EnsemblBacteria:EBBUCT00000000213
GeneID:1005648 KEGG:bas:BUsg532 PATRIC:21247936 OMA:CEHNLNY
ProtClustDB:CLSK552878 BioCyc:BAPH198804:GHMG-575-MONOMER
Uniprot:Q8K928
Length = 376
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 169/379 (44%), Positives = 235/379 (62%)
Query: 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTI 72
KLPP+SLYIH PWCIKKC YCDF+SY K I EK+Y++ LL D+E L +I R+I++I
Sbjct: 3 KLPPISLYIHIPWCIKKCGYCDFYSYVNKSFIPEKEYIDHLLKDLEKDLSLIKEREINSI 62
Query: 73 FIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLS 132
FIGGGTPSL+ + + IT+EANP+T E ++F +Y GINR S
Sbjct: 63 FIGGGTPSLLKSSSIKKMMREIKKRINISNTAEITIEANPTTLEYKRFFNYKKSGINRFS 122
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYA 192
IG+Q+FN+ L + RT++ ++A A+E K+ NFNLD++Y LPNQ+L +++LDL YA
Sbjct: 123 IGVQTFNSDLLKKIERTYNKREAILAVEEIKKINKNFNLDIMYGLPNQSLKDVLLDLQYA 182
Query: 193 IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
++Y+P H+S Y LT+EPNT F+ L++P+ + M + LK + YK YEIS+Y+
Sbjct: 183 VKYNPTHISWYQLTLEPNTPFY-VKKLNLPNENNIFKMLVEGEKFLKQSGYKKYEISSYA 241
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNY-IIRQIRYKNPNIYLKNIFSGNSIAK 311
K YE QHNLNYW FGDY+GIG +H K++ N IIR I+ KN N ++ +G +
Sbjct: 242 KLNYECQHNLNYWNFGDYIGIGCSAHGKITQINGDIIRTIKNKNINDFM----NGKYLKH 297
Query: 312 SKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNI 371
+ KK FE+ +N RL F ERT IN I+ K+K A + G LK
Sbjct: 298 KNFVLKKDKPFEYFMNIFRLYKPVLKRQFEERTNINQNYIKEKIKKAIEKGYLKNKIDFW 357
Query: 372 KPTSFGRYFLNDLQQIFLN 390
T G+ FLN L +IFL+
Sbjct: 358 DTTKKGKMFLNSLLKIFLD 376
>TIGR_CMR|CPS_3668 [details] [associations]
symbol:CPS_3668 "putative oxygen-independent
coproporphyrinogen III oxidase" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004109 "coproporphyrinogen oxidase
activity" evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 GO:GO:0006779 GO:GO:0051536 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 eggNOG:COG0635 KO:K02495 InterPro:IPR010723
Pfam:PF06969 TIGRFAMs:TIGR00539 OMA:CEHNLNY HOGENOM:HOG000015379
RefSeq:YP_270336.1 ProteinModelPortal:Q47XY4 STRING:Q47XY4
GeneID:3519722 KEGG:cps:CPS_3668 PATRIC:21470263
BioCyc:CPSY167879:GI48-3690-MONOMER Uniprot:Q47XY4
Length = 388
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 171/383 (44%), Positives = 235/383 (61%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPI--ILNRKIHTIF 73
PLSLYIH PWC++KCPYCDF+S+ +K I E+ Y+ AL+ D++ + + R +H+IF
Sbjct: 9 PLSLYIHIPWCVEKCPYCDFNSHAVKSAIPEQDYVAALIRDLDADIARFGLSTRSLHSIF 68
Query: 74 IGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSI 133
IGGGTPSL S + ITLEANP T E +KF + G+NRLSI
Sbjct: 69 IGGGTPSLFSAASIKDLLEQVLNRFDHKADIEITLEANPGTVEADKFIGFFKAGVNRLSI 128
Query: 134 GIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYA 192
G+QSF + L LGR HDS QAK A ++A + ++FNLDL++ LPNQ+L + DL A
Sbjct: 129 GVQSFASDKLIKLGRIHDSNQAKIAAKLATESGVSSFNLDLMHGLPNQSLDNALDDLKTA 188
Query: 193 IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
I +P H+S Y LTIEPNT F PP +P +D +QD+ LL Y+ YEISAY+
Sbjct: 189 ISLNPNHISWYQLTIEPNTIFHSKPP-KLPVDDILWEIQDQGVKLLNEAGYQQYEISAYA 247
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKL--SFPNYIIRQIRYKNPNIYLKNIFSGNSIA 310
K GY+ QHNLNYW++GDYLGIG G+H K+ S I+R I+ K+P YL + + + +
Sbjct: 248 KLGYQCQHNLNYWQYGDYLGIGCGAHGKITDSRSQKIMRTIKVKHPKGYLDD--NRDFLD 305
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLK----R 366
K ++++ FEFM+N LRL FS F TG+NIK++ LK A++ L+
Sbjct: 306 KLSEVDESERPFEFMMNQLRLHSAFSIEQFQTSTGLNIKVVLPLLKEAQQKNLMTCEVID 365
Query: 367 NNKNIKPTSFGRYFLNDLQQIFL 389
N + T G+ +LNDL +IFL
Sbjct: 366 NEEYWLVTQLGQRYLNDLLEIFL 388
>UNIPROTKB|Q8EBY6 [details] [associations]
symbol:yggW "Radical SAM superfamily protein YggW"
species:211586 "Shewanella oneidensis MR-1" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015379 OMA:MPAYEVS RefSeq:NP_718913.1
ProteinModelPortal:Q8EBY6 GeneID:1171040 KEGG:son:SO_3359
PATRIC:23526392 ProtClustDB:CLSK907128 Uniprot:Q8EBY6
Length = 385
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 158/374 (42%), Positives = 232/374 (62%)
Query: 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIF 73
LPPLSLYIH PWC++KCPYCDF+S+ + ++ Y++ALL D+ L ++ RK+HTIF
Sbjct: 11 LPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQQAYVDALLADLRQDLHLVQGRKLHTIF 70
Query: 74 IGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSI 133
IGGGTPSL + IT+EANP T E + F +Y G+ RLSI
Sbjct: 71 IGGGTPSLFDANQIKRILDDANALIPFSDGIEITMEANPGTLEHDDFSAYRAAGVTRLSI 130
Query: 134 GIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYA 192
G+QSF+ LN+LGR HD +A+ A + A+Q + +FNLDL++ LPNQ+ E M D++ A
Sbjct: 131 GVQSFSKDKLNLLGRIHDQNEAQTAAQKARQADYLSFNLDLMHGLPNQSFEEAMADIDTA 190
Query: 193 IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
+PPHLS Y LTIEPNT F PP +P +++ + ++ L Y+ YEISAY+
Sbjct: 191 ASLNPPHLSWYQLTIEPNTLFHSKPP-QLPDDEDLWQIYEQGQQKLAALGYEQYEISAYA 249
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFP--NYIIRQIRYKNPNIYLKNIFSGNSIA 310
K GY+ QHNLNYW+FGDYLGIG G+H K++ P N IIR ++ K+P YL + N
Sbjct: 250 KPGYQCQHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLT---ADNYTF 306
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKN 370
+ ++ ++ E+++N LRL F +RTG+ +++ ++ A++ GLL + ++
Sbjct: 307 EQTEVAQEDRALEYLMNRLRLMTPIPKQEFEDRTGLPRDVLKDGMEKAKQRGLLTESAEH 366
Query: 371 IKPTSFGRYFLNDL 384
+ T+ G F+NDL
Sbjct: 367 WQLTNKGHMFVNDL 380
>TIGR_CMR|SO_3359 [details] [associations]
symbol:SO_3359 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:211586 "Shewanella oneidensis MR-1"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015379 OMA:MPAYEVS RefSeq:NP_718913.1
ProteinModelPortal:Q8EBY6 GeneID:1171040 KEGG:son:SO_3359
PATRIC:23526392 ProtClustDB:CLSK907128 Uniprot:Q8EBY6
Length = 385
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 158/374 (42%), Positives = 232/374 (62%)
Query: 14 LPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIF 73
LPPLSLYIH PWC++KCPYCDF+S+ + ++ Y++ALL D+ L ++ RK+HTIF
Sbjct: 11 LPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQQAYVDALLADLRQDLHLVQGRKLHTIF 70
Query: 74 IGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSI 133
IGGGTPSL + IT+EANP T E + F +Y G+ RLSI
Sbjct: 71 IGGGTPSLFDANQIKRILDDANALIPFSDGIEITMEANPGTLEHDDFSAYRAAGVTRLSI 130
Query: 134 GIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYA 192
G+QSF+ LN+LGR HD +A+ A + A+Q + +FNLDL++ LPNQ+ E M D++ A
Sbjct: 131 GVQSFSKDKLNLLGRIHDQNEAQTAAQKARQADYLSFNLDLMHGLPNQSFEEAMADIDTA 190
Query: 193 IQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
+PPHLS Y LTIEPNT F PP +P +++ + ++ L Y+ YEISAY+
Sbjct: 191 ASLNPPHLSWYQLTIEPNTLFHSKPP-QLPDDEDLWQIYEQGQQKLAALGYEQYEISAYA 249
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFP--NYIIRQIRYKNPNIYLKNIFSGNSIA 310
K GY+ QHNLNYW+FGDYLGIG G+H K++ P N IIR ++ K+P YL + N
Sbjct: 250 KPGYQCQHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLT---ADNYTF 306
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKN 370
+ ++ ++ E+++N LRL F +RTG+ +++ ++ A++ GLL + ++
Sbjct: 307 EQTEVAQEDRALEYLMNRLRLMTPIPKQEFEDRTGLPRDVLKDGMEKAKQRGLLTESAEH 366
Query: 371 IKPTSFGRYFLNDL 384
+ T+ G F+NDL
Sbjct: 367 WQLTNKGHMFVNDL 380
>UNIPROTKB|P52062 [details] [associations]
symbol:yggW "predicted oxidoreductase" species:83333
"Escherichia coli K-12" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0006779
EMBL:U28377 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00539 OMA:CEHNLNY PIR:B65081 RefSeq:NP_417430.1
RefSeq:YP_491154.1 ProteinModelPortal:P52062 SMR:P52062
DIP:DIP-12198N IntAct:P52062 MINT:MINT-1261070 PRIDE:P52062
EnsemblBacteria:EBESCT00000004775 EnsemblBacteria:EBESCT00000014373
GeneID:12933358 GeneID:947446 KEGG:ecj:Y75_p2885 KEGG:eco:b2955
PATRIC:32121322 EchoBASE:EB2808 EcoGene:EG12983
HOGENOM:HOG000015379 ProtClustDB:PRK05660
BioCyc:EcoCyc:G7531-MONOMER BioCyc:ECOL316407:JW2922-MONOMER
Genevestigator:P52062 Uniprot:P52062
Length = 378
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 157/380 (41%), Positives = 228/380 (60%)
Query: 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTI 72
KLPPLSLYIH PWC++KCPYCDF+S+ +K + Y++ LL D++ + R++ TI
Sbjct: 3 KLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLDNDVAYAQGREVKTI 62
Query: 73 FIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLS 132
FIGGGTPSL+S + IT+EANP T E ++F Y G+NR+S
Sbjct: 63 FIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANPGTVEADRFVDYQRAGVNRIS 122
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNY 191
IG+QSF+ + L LGR H ++AK A ++A +FNLDL++ LP+Q+L E + DL
Sbjct: 123 IGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLDLMHGLPDQSLEEALGDLRQ 182
Query: 192 AIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAY 251
AI+ +PPHLS Y LTIEPNT F PP+ +P +D + ++ LL Y+ YE SAY
Sbjct: 183 AIELNPPHLSWYQLTIEPNTLFGSRPPV-LPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241
Query: 252 SKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSGNSIA 310
+K GY+ QHNLNYW+FGDY+GIG G+H K++FP+ I+R + ++P +++ G +
Sbjct: 242 AKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDGRILRTTKTRHPRGFMQ----GRYLE 297
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNL-FFERTGINIKIIESKLKNAEKLGLLKRNNK 369
+ +E FEF +N RL + +P + F TG+ +I +L A G L
Sbjct: 298 SQRDVEATDKPFEFFMNRFRLLEA-APRVEFIAYTGLCEDVIRPQLDEAIAQGYLTECAD 356
Query: 370 NIKPTSFGRYFLNDLQQIFL 389
+ T G+ FLN L ++FL
Sbjct: 357 YWQITEHGKLFLNSLLELFL 376
>UNIPROTKB|Q9KUR0 [details] [associations]
symbol:VC_0455 "Oxygen-independent coproporphyrinogen III
oxidase, putative" species:243277 "Vibrio cholerae O1 biovar El Tor
str. N16961" [GO:0004109 "coproporphyrinogen oxidase activity"
evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
ProtClustDB:PRK05660 OMA:DWIHERT PIR:G82320 RefSeq:NP_230109.1
ProteinModelPortal:Q9KUR0 DNASU:2615117 GeneID:2615117
KEGG:vch:VC0455 PATRIC:20080005 Uniprot:Q9KUR0
Length = 391
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 167/387 (43%), Positives = 231/387 (59%)
Query: 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII-LN---RKIH 70
P LSLYIH PWC++KCPYCDF+S+ K I E++YL+ALL D++ + L R +H
Sbjct: 5 PSLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLQDLDRDIERYQLKGDPRLLH 64
Query: 71 TIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINR 130
+IFIGGGTPSLIS G+ IT+EANP T E ++F Y G+ R
Sbjct: 65 SIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTAGVTR 124
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDL 189
+SIG+QSF + L LGR H ++A A ++A Q N+FNLDL++ LP+QT + + DL
Sbjct: 125 ISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADL 184
Query: 190 NYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249
+ AI +PPHLS Y LTIEPNT F+ PP +P D + + L + Y YEIS
Sbjct: 185 DQAIALNPPHLSWYQLTIEPNTLFYSKPP-KLPDEDALWDIFELGHQKLSDAGYVQYEIS 243
Query: 250 AYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSGNS 308
YSK GY+ QHNLNYW+FGDYLGIG G+H KLSF + I+R + K+P YL + N+
Sbjct: 244 GYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAAL---NN 300
Query: 309 IAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLG 362
+AK+ ++ + L+ FEF +N RL + F TG+ I +I L A G
Sbjct: 301 LAKAY-LDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSEG 359
Query: 363 LLKRNNKNIKPTSFGRYFLNDLQQIFL 389
L ++++ + T G+ FLNDL + F+
Sbjct: 360 YLSEDDQHWQITEKGKLFLNDLLEAFM 386
>TIGR_CMR|VC_0455 [details] [associations]
symbol:VC_0455 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
ProtClustDB:PRK05660 OMA:DWIHERT PIR:G82320 RefSeq:NP_230109.1
ProteinModelPortal:Q9KUR0 DNASU:2615117 GeneID:2615117
KEGG:vch:VC0455 PATRIC:20080005 Uniprot:Q9KUR0
Length = 391
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 167/387 (43%), Positives = 231/387 (59%)
Query: 15 PPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPII-LN---RKIH 70
P LSLYIH PWC++KCPYCDF+S+ K I E++YL+ALL D++ + L R +H
Sbjct: 5 PSLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLQDLDRDIERYQLKGDPRLLH 64
Query: 71 TIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINR 130
+IFIGGGTPSLIS G+ IT+EANP T E ++F Y G+ R
Sbjct: 65 SIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTAGVTR 124
Query: 131 LSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDL 189
+SIG+QSF + L LGR H ++A A ++A Q N+FNLDL++ LP+QT + + DL
Sbjct: 125 ISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPEQALADL 184
Query: 190 NYAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249
+ AI +PPHLS Y LTIEPNT F+ PP +P D + + L + Y YEIS
Sbjct: 185 DQAIALNPPHLSWYQLTIEPNTLFYSKPP-KLPDEDALWDIFELGHQKLSDAGYVQYEIS 243
Query: 250 AYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPN-YIIRQIRYKNPNIYLKNIFSGNS 308
YSK GY+ QHNLNYW+FGDYLGIG G+H KLSF + I+R + K+P YL + N+
Sbjct: 244 GYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAAL---NN 300
Query: 309 IAKSKKIEKKCLI------FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLG 362
+AK+ ++ + L+ FEF +N RL + F TG+ I +I L A G
Sbjct: 301 LAKAY-LDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSEG 359
Query: 363 LLKRNNKNIKPTSFGRYFLNDLQQIFL 389
L ++++ + T G+ FLNDL + F+
Sbjct: 360 YLSEDDQHWQITEKGKLFLNDLLEAFM 386
>TIGR_CMR|SPO_0006 [details] [associations]
symbol:SPO_0006 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 HOGENOM:HOG000015381
TIGRFAMs:TIGR00539 OMA:MPAYEVS RefSeq:YP_165279.1
ProteinModelPortal:Q5LWF8 GeneID:3196529 KEGG:sil:SPO0006
PATRIC:23373241 ProtClustDB:PRK09057 Uniprot:Q5LWF8
Length = 385
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 118/368 (32%), Positives = 198/368 (53%)
Query: 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT 78
LY+H+P+C KCPYCDF+S+ + + I +K ++ A + ++E + R ++TIF GGGT
Sbjct: 12 LYVHWPFCQAKCPYCDFNSH-VAREIDQKAWVRAYVSELERCAAELPGRVLNTIFFGGGT 70
Query: 79 PSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138
PSL+ + ITLEANP + E +F +Y G+NR+S+G+Q+
Sbjct: 71 PSLMMPETVAAVIETVRRLWPTSNDMEITLEANPGSVEAGRFAAYRDGGVNRISMGVQAL 130
Query: 139 NNKYLNILGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPP 198
N++ L+ LGR H +A+ A +IA++ F + DLIYA +QT +LN A+ +
Sbjct: 131 NDRDLHRLGRIHSVAEARAAFDIARRCFERVSFDLIYARQDQTPEAWRAELNEALAMAVD 190
Query: 199 HLSLYSLTIEPNTYFF-KYPP---LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKT 254
HLSLY LTIE T F +Y +P++D+ A M + + YE+S +++
Sbjct: 191 HLSLYQLTIEDGTAFGDRYARGKLRGLPADDDAADMYLITQEVCATHGLPAYEVSNHARP 250
Query: 255 GYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKK 314
G ES+HNL YW++GDY+GIG G+H +++ NP +L + G+
Sbjct: 251 GSESRHNLIYWRYGDYVGIGPGAHGRITVDGQRFATESPLNPGAWLGAVAKGSGELSRVA 310
Query: 315 IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPT 374
+ + E+++ LR+ +G + + E + ++L + +LG+++ +K T
Sbjct: 311 LSLQDQADEYLMMGLRIAEGLDIHRY-EALSPQ-PLNRNRLAHLTELGMIEIEGTRLKAT 368
Query: 375 SFGRYFLN 382
+ GR LN
Sbjct: 369 AQGRAVLN 376
>TIGR_CMR|GSU_0030 [details] [associations]
symbol:GSU_0030 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015380 OMA:MPAYEVS RefSeq:NP_951092.1
ProteinModelPortal:Q74H62 GeneID:2685648 KEGG:gsu:GSU0030
PATRIC:22022797 ProtClustDB:CLSK827599
BioCyc:GSUL243231:GH27-50-MONOMER Uniprot:Q74H62
Length = 385
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 118/383 (30%), Positives = 197/383 (51%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSY-EIKKNISEKKYLEALLIDVELSL--PIILNRKIHTI 72
PL LY+H P+C+KKC YC F S + I + L A +++ ++ P+ L+ T+
Sbjct: 4 PLHLYVHIPFCLKKCRYCSFVSRSDAPLAIDDYASLVAREMEMRVAAANPLPLSPAT-TL 62
Query: 73 FIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLS 132
++GGGTPSL+S L+ ITLEANP T ++ + G+NRLS
Sbjct: 63 YLGGGTPSLLSPAALERIIDAAARSYGLGPGAEITLEANPGTVTFQRLADFRSAGVNRLS 122
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNY 191
+G+QSF++ L +LGR H ++QA+ A+ ++ F+N +DLI++LP QT + L
Sbjct: 123 LGVQSFDDGMLVLLGRLHTARQAREAVAATRRAGFDNIGIDLIHSLPGQTPDQWREQLAC 182
Query: 192 AIQYSPPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYKNYEI 248
A+ +P H+S Y LT+E T F L +P +++A+M + T +L + +++YEI
Sbjct: 183 AVALNPDHVSAYGLTVEEGTPFAAMEERGELVLPDEEQSALMFEATTDVLVSAGFEHYEI 242
Query: 249 SAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNS 308
+ +++ S+HN YW +YLG GAG+HS L P + +R + +Y + +
Sbjct: 243 ANFARPHRRSRHNQVYWLRRNYLGFGAGAHSFLRAPAFGVRWKNTDDLELYRDTLAAAEL 302
Query: 309 IAKSKKIEKKC-LIFEFMLNALRLKDGFSPNLFFERTGINIKIIESK-LKNAEKLGLLKR 366
+ + + + + EF LRL DG F G ++ + + ++ GLL R
Sbjct: 303 PGEERTVLSRADAMAEFFFLGLRLLDGVREEDFVREFGDTMENVYGREMERLCSAGLLMR 362
Query: 367 NNKNIKPTSFGRYFLNDLQQIFL 389
+K + G N + FL
Sbjct: 363 EGGRLKLSRRGVILANRVFASFL 385
>TIGR_CMR|DET_0858 [details] [associations]
symbol:DET_0858 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
HOGENOM:HOG000015380 OMA:MPAYEVS RefSeq:YP_181584.1
ProteinModelPortal:Q3Z865 STRING:Q3Z865 GeneID:3229839
KEGG:det:DET0858 PATRIC:21608775 ProtClustDB:CLSK837244
BioCyc:DETH243164:GJNF-859-MONOMER Uniprot:Q3Z865
Length = 378
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 127/381 (33%), Positives = 200/381 (52%)
Query: 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG 76
L+LY+HFP+C++KC YC F SY + + Y++ L +++ + H+++ GG
Sbjct: 6 LALYLHFPFCLQKCGYCSFVSYPARLDCLPD-YVKCLRKEIKSRASGLY---FHSLYFGG 61
Query: 77 GTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
GTPSL+S + + IT EANP T + +GINRLS+GIQ
Sbjct: 62 GTPSLLSPSQVADILAGIRTAAHLLPDAEITFEANPGTLALPYLPEIKSLGINRLSLGIQ 121
Query: 137 SFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
SF+ L +LGR H++ +A+ A + A+ FNN +LDLIY LP+ ++S +L A+
Sbjct: 122 SFSGAELTMLGRLHNAAKARQAYKQARAAGFNNISLDLIYGLPDSSVSSFKKNLAEALAL 181
Query: 196 SPPHLSLYSLTIEPNTYFFKYPPLSM-PS-NDENAVMQDKITS-LLKNNYYKNYEISAYS 252
+P H+SLY LT+E +T ++ + P N E A Q + +L Y++YEIS ++
Sbjct: 182 APEHISLYGLTLEEDTPMYRQVQEGLLPEINAETAADQYQAAEDILAKAGYRHYEISNWA 241
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKS 312
K GYES+HNL YW+ YLG+GA HS L N+ R + + YL + S
Sbjct: 242 KPGYESRHNLTYWQNRPYLGLGAAGHSFLE--NW--RLANTSSLDEYLNRWQNDLPPTPS 297
Query: 313 KKI--EKKCLIFEFMLNALRLKDGFSPNLFFERTGINI--KIIESKLKNAEKLGLLKRNN 368
+ I + + + E ++ LRL G + R G ++ K ++ LGLL++++
Sbjct: 298 ENIYLDLENQLAETIILGLRLDKGITAEDIENRFGQHVMDKYFPV-IQECTGLGLLEKSD 356
Query: 369 KNIKPTSFGRYFLNDLQQIFL 389
I T GR N++ FL
Sbjct: 357 GGISLTPRGRLLSNEVFWRFL 377
>TIGR_CMR|BA_4542 [details] [associations]
symbol:BA_4542 "oxygen-independent coproporphyrinogen III
oxidase" species:198094 "Bacillus anthracis str. Ames" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0006779 GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 KO:K02495 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 OMA:MPAYEVS
RefSeq:NP_846765.1 RefSeq:YP_021188.1 ProteinModelPortal:Q81LR9
EnsemblBacteria:EBBACT00000008456 EnsemblBacteria:EBBACT00000017627
GeneID:1088276 GeneID:2819000 KEGG:ban:BA_4542 KEGG:bar:GBAA_4542
PATRIC:18786672 ProtClustDB:PRK08599
BioCyc:BANT261594:GJ7F-4418-MONOMER Uniprot:Q81LR9
Length = 378
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 117/380 (30%), Positives = 189/380 (49%)
Query: 20 YIHFPWCIKKCPYCDFHSYEIKKNISEK--KYLEALLIDVELSLPIILNRKIHTIFIGGG 77
YIH P+C C YCDF+ I++ ++ +YLE +I+ +P + TIF+GGG
Sbjct: 5 YIHIPFCQHICHYCDFNKVFIERQPVDQYLEYLEKEIINTVQKVPF---DSMKTIFVGGG 61
Query: 78 TPSLIS-DTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
TP+ ++ + +T EANP EK + G+NR+S G+Q
Sbjct: 62 TPTALNMEQTKKLLDIINRRLRPFAPNCELTFEANPGDLPKEKLNVLLEGGVNRISFGVQ 121
Query: 137 SFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
+F ++ L +GR H + A AI A++ F N N+D+IYALP QT+ ++ L+ A
Sbjct: 122 TFRDELLEKIGRKHTREDAFVAIREAQEVGFKNINVDIIYALPGQTIEDVKETLDIAFTL 181
Query: 196 SPPHLSLYSLTIEPNTYFFKYP---PLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
H S YSL +EP T F+ L +P D A M + + ++ + Y YEIS +S
Sbjct: 182 GVQHFSAYSLIVEPKTVFYNLMNKGKLRLPGEDHEAKMYEMVMDEMERHGYTQYEISNFS 241
Query: 253 KTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNP-NIYLKNIF-SGNSIA 310
K ES+HNL YW +Y G GAG+HS ++ +I+ P Y I +G
Sbjct: 242 KGDNESRHNLTYWNNEEYYGFGAGAHSYVNG-----ERIQNVGPLKQYFNKIDETGFPYL 296
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINI-KIIESKLKNAEKLGLLKRNNK 369
+ +K + E + LR G S F + + + ++ +L+N ++ GLL+ ++
Sbjct: 297 DVHVVTEKEKMEEELFLGLRKTKGVSKMAFRNKFNVEMNQVFAKQLQNNQEQGLLEESDG 356
Query: 370 NIKPTSFGRYFLNDLQQIFL 389
++ T G+ N++ Q FL
Sbjct: 357 YVRLTRKGKLLGNEVFQSFL 376
>ZFIN|ZDB-GENE-030131-2508 [details] [associations]
symbol:rsad1 "radical S-adenosyl methionine domain
containing 1" species:7955 "Danio rerio" [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0004109 "coproporphyrinogen
oxidase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
ZFIN:ZDB-GENE-030131-2508 GO:GO:0005737 GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539 OMA:WLGQLQE
GeneTree:ENSGT00390000011216 EMBL:BX682552 IPI:IPI00846095
ProteinModelPortal:F1RB14 Ensembl:ENSDART00000110809 Bgee:F1RB14
Uniprot:F1RB14
Length = 444
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 103/357 (28%), Positives = 183/357 (51%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
SLY+H+P+C+K+C YC+F+ Y I ++ + E L + E L + +I ++F GGG
Sbjct: 45 SLYVHWPYCLKRCSYCNFNKY-ILRSENHDTMTECLQKETETLLKLSQVSRITSVFFGGG 103
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL + + +TLE NP+ + +++ G+NR SIG+QS
Sbjct: 104 TPSLAQSSTIAAVLETVTKNSNLSDLAEVTLEVNPTPAGKARLKDFTLAGVNRFSIGVQS 163
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
N +L ILGR H + A + A++ ++D+++ALP Q++S L +
Sbjct: 164 LNADHLRILGRDHSVQHALQTVSEARKLCPGRVSVDIMFALPGQSVSCWQKQLEELLYVC 223
Query: 197 PPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
H+SLY LT+E T FK LS+P ++ AVM +L+ + + YE+S +++
Sbjct: 224 DDHISLYQLTLERGTQLFKQVESGKLSVPGDEVTAVMYKTACRVLEESGFHQYEVSNFAR 283
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNY---IIRQIRYKN--PNIYLKNIFS-GN 307
S+HN+ YW+ Y+G+G G+H + P+ + R+ R + P++++K + S G
Sbjct: 284 NNAVSEHNMGYWRGHQYIGVGPGAHGRF-VPHGDGGVQREARTQTLEPDVWIKEVQSRGQ 342
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDGFSPN---LFFERTGINIKIIESKLKNAEKL 361
+ + L+ E ++ LR+ +G + LF N++ + K N ++L
Sbjct: 343 GTRRRITLHHLQLLEEVLVMGLRMNEGITHQHWELFSPEA--NLQQVFGKSANIQEL 397
>TAIR|locus:2161897 [details] [associations]
symbol:AT5G63290 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006779 "porphyrin-containing
compound biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006779 GO:GO:0051536
EMBL:AB008265 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 TIGRFAMs:TIGR00539 UniGene:At.70283
UniGene:At.8846 EMBL:BT029015 IPI:IPI00526807 RefSeq:NP_201134.1
ProteinModelPortal:Q9FMJ4 STRING:Q9FMJ4 PRIDE:Q9FMJ4
EnsemblPlants:AT5G63290.1 GeneID:836449 KEGG:ath:AT5G63290
TAIR:At5g63290 HOGENOM:HOG000015380 InParanoid:Q9FMJ4 OMA:DWIHERT
PhylomeDB:Q9FMJ4 ProtClustDB:CLSN2687553 Genevestigator:Q9FMJ4
Uniprot:Q9FMJ4
Length = 484
Score = 363 (132.8 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 87/288 (30%), Positives = 145/288 (50%)
Query: 66 NRKIHTIFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSI 125
N + T+F GGGTPSL+ + I++E +P TF+ +K
Sbjct: 124 NPNLETVFFGGGTPSLVPPKLVSLILETLSLNFGLSPDAEISMEMDPGTFDGQKLKDLMK 183
Query: 126 IGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSE 184
+G+NR+S+G+Q+F ++ L GR H Q AIE K+ N+++DLI +LP+QTL
Sbjct: 184 LGVNRVSLGVQAFQDELLKACGRAHGVSQVYEAIEFVKECGVENWSMDLISSLPHQTLEM 243
Query: 185 LMLDLNYAIQYSPPHLSLYSLTIEPNTYFFK-YPP--LSMPSNDENAVMQDKITSLLKNN 241
L AI+ P H+S+Y L +E T F Y P +PS ++A +S+L+
Sbjct: 244 WEESLRLAIESQPNHVSVYDLQVEQGTKFGNLYTPGQSPLPSETQSAEFYKTASSMLRGA 303
Query: 242 YYKNYEISAYSKTGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLK 301
Y++YE+S+YS+ G++ +HNL YWK + G GS S + + R R K Y+
Sbjct: 304 GYEHYEVSSYSRDGFKCKHNLIYWKNKPFYAFGLGSASYVGGLRFS-RPRRLKEYTNYVA 362
Query: 302 NIFSGNSI-AKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINI 348
++ +G + + ++ K + + ++ + R G F E G +
Sbjct: 363 DLENGAANWCGNGDVDLKDVATDILMLSFRTSKGLELKEFGEAFGSEV 410
Score = 92 (37.4 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 11 IKKLPPLSLYIHFPWCIKKCPYCDF 35
+ K PP S Y+H P+C K+C YCDF
Sbjct: 51 LHKGPPTSAYVHLPFCRKRCHYCDF 75
>TIGR_CMR|CHY_0411 [details] [associations]
symbol:CHY_0411 "putative oxygen-independent
coproporphyrinogen III oxidase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0004109 "coproporphyrinogen oxidase
activity" evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 KO:K02495 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 RefSeq:YP_359272.1
ProteinModelPortal:Q3AF12 STRING:Q3AF12 GeneID:3727497
KEGG:chy:CHY_0411 PATRIC:21273983 OMA:MPAYEVS
BioCyc:CHYD246194:GJCN-412-MONOMER Uniprot:Q3AF12
Length = 376
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 116/373 (31%), Positives = 183/373 (49%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H P+C+KKC YC F S+ YL + ++E + K TI++GGG
Sbjct: 9 ALYLHMPFCLKKCHYCAFTSFPAPAGEGVFSYLSLIKKELEWRKDFLAPLK--TIYVGGG 66
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TP+ +S L+ T+EANP T EK +G+NR+S+G QS
Sbjct: 67 TPTSLSLNALE-KLGEIISPYISDKLLEFTVEANPGTLNREKIRLLKDLGVNRVSLGAQS 125
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
FN++ L +GR H + Q A + ++ NN NLDLI P S + + AI
Sbjct: 126 FNDEILLKMGRAHTAAQTLEAYNLLREEGINNLNLDLIIGYPEGRES-FINTVKTAISLK 184
Query: 197 PPHLSLYSLTIEPNTYFFKYPP---LSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
P H+SLY L +E NT ++ + +P DE + ++ +LL+ N Y+ YEI+ +++
Sbjct: 185 PEHISLYDLKVEENTRLYEEVAKGEIILPEEDEVVLYWEEAINLLEENGYERYEIANFAR 244
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNI---YLKNIFSGNSIA 310
S+HNL YW+ YLGIG +HSK+ Y R+ NPN Y + + +G +
Sbjct: 245 NQQYSRHNLTYWENKPYLGIGLAAHSKVGL--Y-----RFWNPNTMLEYREMLLTGKNYG 297
Query: 311 KSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIKI-IESKLKNAEKLGLLKRNNK 369
+ K ++ E +L LRLK G + F ++ + K++ +LGLL +
Sbjct: 298 EEKLTLEEDAKEEIILR-LRLKTGLNLQEFQKKYRRDFMAEFGDKIQKFIELGLLFLEDD 356
Query: 370 NIKPTSFGRYFLN 382
+ T G + N
Sbjct: 357 RLFLTRKGSFVAN 369
>UNIPROTKB|A5D7B1 [details] [associations]
symbol:RSAD1 "Radical S-adenosyl methionine
domain-containing protein 1, mitochondrial" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0006779 "porphyrin-containing
compound biosynthetic process" evidence=IEA] [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0046872
GO:GO:0051539 GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969
EMBL:BC140491 IPI:IPI00706716 RefSeq:NP_001091605.1
UniGene:Bt.29418 ProteinModelPortal:A5D7B1 STRING:A5D7B1
GeneID:615755 KEGG:bta:615755 CTD:55316 HOGENOM:HOG000015381
HOVERGEN:HBG108421 InParanoid:A5D7B1 OrthoDB:EOG4SQWX4
NextBio:20899769 TIGRFAMs:TIGR00539 Uniprot:A5D7B1
Length = 442
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 106/381 (27%), Positives = 195/381 (51%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E L+I+ + L + R++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRGVDEAALRRCLVIEAQTLLRLSGVRRVESVFFGGG 99
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +TLEANP++ + ++ G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQAAHLPADSEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH ++ A + A++ F ++DL+ LP Q + + L ++
Sbjct: 160 LDDTELQLLGRTHSARDALQTLAEAQRLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCC 219
Query: 197 PPHLSLYSLTIEPNTYFF-KYPPLSMPSNDEN--AVMQDKITSLLKNNYYKNYEISAYSK 253
H+SLY L++E T F + ++P+ D A M + ++L+ ++ YE+S +++
Sbjct: 220 DDHVSLYQLSLERGTTLFTQVQQGALPAPDPELAAEMYQEGRAVLREAGFRQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNIFS-GN 307
G S HN YW+ G YLG+G G+H + P R+ R + P+ ++K + G+
Sbjct: 280 NGALSTHNWTYWQCGQYLGVGPGAHGRF-IPQGAGGHTREARIQTLEPDSWMKEVMLFGH 338
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLF--FER--TGINIKIIESKLKNAEKLGL 363
+ + + L+ E + LR G + + FE T ++ ++K ++ GL
Sbjct: 339 GTRRRVPLSELELLEEVLAMGLRTDVGITHQHWQQFEPQLTLWDLFGASKEVKELQEQGL 398
Query: 364 LKRNNKNIKPTSFGRYFLNDL 384
L +++ ++ + G L+ L
Sbjct: 399 LLLDHRGLRCSWEGLAVLDSL 419
>UNIPROTKB|G5E5Q7 [details] [associations]
symbol:RSAD1 "Radical S-adenosyl methionine
domain-containing protein 1, mitochondrial" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
InterPro:IPR010723 Pfam:PF06969 UniGene:Bt.29418 TIGRFAMs:TIGR00539
OMA:WLGQLQE GeneTree:ENSGT00390000011216 EMBL:DAAA02049037
ProteinModelPortal:G5E5Q7 Ensembl:ENSBTAT00000028387 Uniprot:G5E5Q7
Length = 442
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 106/381 (27%), Positives = 195/381 (51%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E L+I+ + L + R++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRGVDEAALRRCLVIEAQTLLRLSGVRRVESVFFGGG 99
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +TLEANP++ + ++ G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQAAHLPADSEVTLEANPTSASGSRLAAFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH ++ A + A++ F ++DL+ LP Q + + L ++
Sbjct: 160 LDDTELQLLGRTHSARDALQTLAEAQRLFPGRVSVDLMLGLPAQQVGPWLRQLQGLLRCC 219
Query: 197 PPHLSLYSLTIEPNTYFF-KYPPLSMPSNDEN--AVMQDKITSLLKNNYYKNYEISAYSK 253
H+SLY L++E T F + ++P+ D A M + ++L+ ++ YE+S +++
Sbjct: 220 DDHVSLYQLSLERGTTLFTQVQQGALPAPDPELAAEMYQEGRAVLREAGFRQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNIFS-GN 307
G S HN YW+ G YLG+G G+H + P R+ R + P+ ++K + G+
Sbjct: 280 NGALSTHNWTYWQCGQYLGVGPGAHGRF-IPQGAGGHTREARIQTLEPDSWMKEVMLFGH 338
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLF--FER--TGINIKIIESKLKNAEKLGL 363
+ + + L+ E + LR G + + FE T ++ ++K ++ GL
Sbjct: 339 GTRRRVPLSELELLEEVLAMGLRTDVGITHQHWQQFEPQLTLWDLFGANKEVKELQEQGL 398
Query: 364 LKRNNKNIKPTSFGRYFLNDL 384
L +++ ++ + G L+ L
Sbjct: 399 LLLDHRGLRCSWEGLAVLDSL 419
>MGI|MGI:3039628 [details] [associations]
symbol:Rsad1 "radical S-adenosyl methionine domain
containing 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004109 "coproporphyrinogen oxidase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 MGI:MGI:3039628
GO:GO:0005739 GO:GO:0046872 GO:GO:0051539 GO:GO:0006779
EMBL:AL645809 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969 CTD:55316
HOGENOM:HOG000015381 HOVERGEN:HBG108421 OrthoDB:EOG4SQWX4
TIGRFAMs:TIGR00539 OMA:WLGQLQE EMBL:BC056485 EMBL:BC139274
EMBL:BC139276 IPI:IPI00121868 RefSeq:NP_001013399.1
UniGene:Mm.342275 ProteinModelPortal:Q5SUV1 STRING:Q5SUV1
PRIDE:Q5SUV1 Ensembl:ENSMUST00000040487 GeneID:237926
KEGG:mmu:237926 UCSC:uc007kza.2 GeneTree:ENSGT00390000011216
InParanoid:B2RTE1 NextBio:383574 Bgee:Q5SUV1 CleanEx:MM_RSAD1
Genevestigator:Q5SUV1 Uniprot:Q5SUV1
Length = 442
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 100/327 (30%), Positives = 166/327 (50%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E L+ + L + +++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRGVEEGTVRNCLVTEARTLLRLSGVQRVESVFFGGG 99
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +TLEANP++ + ++ G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQEVYLPADSEVTLEANPTSAPGPRLAAFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH + A + A+ F ++DL+ LP Q + + L + +
Sbjct: 160 LDDAELQLLGRTHSASDALRTLAEARLLFPGRVSVDLMLGLPAQKVEPWLQQLQKLLYHC 219
Query: 197 PPHLSLYSLTIEPNTYFF---KYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSK 253
HLSLY LT+E T F + L P D A M + ++L++ ++ YE+S +++
Sbjct: 220 DDHLSLYQLTLERGTSLFAQVQQGTLPAPDPDLAAEMYQEGRTVLRDAGFRQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNI-FSGN 307
G S HN YW+ G YLGIG G+H + P R+ R + P+ ++K + G+
Sbjct: 280 NGALSTHNWTYWQCGQYLGIGPGAHGRF-VPQGTGGHTREARIQTLEPDNWMKEVTLFGH 338
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDG 334
K ++ K L+ E + LR G
Sbjct: 339 GTRKCVRLGKLELLEEVLAMGLRTDVG 365
>UNIPROTKB|F1RT95 [details] [associations]
symbol:RSAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
TIGRFAMs:TIGR00539 OMA:WLGQLQE GeneTree:ENSGT00390000011216
EMBL:FP565647 RefSeq:XP_003131622.1 UniGene:Ssc.6397
ProteinModelPortal:F1RT95 Ensembl:ENSSSCT00000019122
GeneID:100513042 KEGG:ssc:100513042 Uniprot:F1RT95
Length = 442
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 95/329 (28%), Positives = 170/329 (51%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E L+ + + L + +++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRGVDEAAMRRCLVTEAQTLLRLSGVQRVESVFFGGG 99
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +TLEANP++ + ++ G+NRLSIG+QS
Sbjct: 100 TPSLASPRTVAAVLEAVAQATHLPVDSEVTLEANPTSAPGSRLAAFRAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH + A + A++ F ++DL+ LP Q + + L ++
Sbjct: 160 LDDAELQLLGRTHSASDALRTLAEARRLFPGRVSVDLLLGLPAQQVGPWLRQLQELLRRC 219
Query: 197 PPHLSLYSLTIEPNTYFF-KYPPLSMPSNDEN--AVMQDKITSLLKNNYYKNYEISAYSK 253
H+SLY LT+E T F + ++P+ D A M + ++L+ ++ YE+S +++
Sbjct: 220 DDHVSLYQLTLERGTALFAQVQQGALPAPDPELAAEMYQQGRAVLREAGFRQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNIFS-GN 307
G S HN YW+ G YLG+G G+H + P R+ R + P+ ++K + G+
Sbjct: 280 NGALSTHNWTYWQCGQYLGVGPGAHGRF-IPQGAGGHTREARIQTLEPDNWMKEVMLFGH 338
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDGFS 336
+ ++ + L+ E + LR G +
Sbjct: 339 GTRRRIRLGELELLEEVLAMGLRTDVGLT 367
>DICTYBASE|DDB_G0280411 [details] [associations]
symbol:DDB_G0280411 "radical S-adenosyl methionine
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004559
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
dictyBase:DDB_G0280411 GO:GO:0005739 GenomeReviews:CM000152_GR
GO:GO:0046872 GO:GO:0051539 GO:GO:0006779 EMBL:AAFI02000036
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
KO:K02495 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00539
RefSeq:XP_641161.1 ProteinModelPortal:Q54VE8 STRING:Q54VE8
EnsemblProtists:DDB0205185 GeneID:8622541 KEGG:ddi:DDB_G0280411
OMA:WLGQLQE ProtClustDB:CLSZ2430610 Uniprot:Q54VE8
Length = 446
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 118/384 (30%), Positives = 200/384 (52%)
Query: 2 KYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSL 61
++K +N L K LP +SL++++P+C K CPYC+F+ Y + ++ ++L ++E +
Sbjct: 13 QFKGYNKL--KDLP-ISLFVYWPYCSKICPYCNFNKYRDSDKVDHERMSKSLSRELESFV 69
Query: 62 P-IILN---------RKIHTIFIGGGTPSLIS-DTGLDYXXXXXXX--XXXXXXXXSITL 108
I LN R I +I+ GGGTPSL T ++ ITL
Sbjct: 70 KNIYLNSNENSFIRERPITSIYFGGGTPSLAKISTFVETIETMKKLFPSSLSIEDIEITL 129
Query: 109 EANPSTFEIEK----FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 164
E NP +++ F Y +G+NR+S+G+QS +K L+ LGRTH+ QA+ +I+IA+
Sbjct: 130 EVNPDQKDLKNLLKDFKKY--VGVNRVSLGVQSLVDKDLHFLGRTHNRIQAEESIKIARD 187
Query: 165 YFNNFNLDLIYALP-NQTLSELMLDLNYAIQYSPP--HLSLYSLTIEPNTYFFKYPPLS- 220
F++ DLIY+ +QTL + +L YA+ + H+SLY+LT E T F++
Sbjct: 188 LFDHVTFDLIYSRTIDQTLEQWRNELRYALNLADGNGHVSLYTLTFEQGTSFYRRLSSKG 247
Query: 221 -----MPSNDENAV-MQDKITSLLKNNYYKNYEISAYSKT-GYESQHNLNYWKFGDYLGI 273
+P +D+ + + D + ++ YEIS+++ + + +HNLNYW+ GD++GI
Sbjct: 248 NKFKIIPPDDQKSSDLYDLTVCEAEAMGFQQYEISSFASSHNQKGKHNLNYWRSGDFIGI 307
Query: 274 GAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKKIEKKCLIFEFMLNALRLKD 333
G G+ S+L+ N N N + +S +I K+ +K E + NA ++D
Sbjct: 308 GPGASSRLTTLN------NNNNNNNQISR-YSFKNILHPKEWMEKLNSKEILCNAF-IED 359
Query: 334 GFSPNLFFERTGINIKIIESKLKN 357
F+P + N ++ E L N
Sbjct: 360 EFNPTIPLT----NFEVAEEMLLN 379
>UNIPROTKB|Q9HA92 [details] [associations]
symbol:RSAD1 "Radical S-adenosyl methionine
domain-containing protein 1, mitochondrial" species:9606 "Homo
sapiens" [GO:0004109 "coproporphyrinogen oxidase activity"
evidence=IEA] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR004559 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005739 GO:GO:0046872
GO:GO:0051539 GO:GO:0006779 Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0004109 eggNOG:COG0635 InterPro:IPR010723 Pfam:PF06969
CTD:55316 HOGENOM:HOG000015381 HOVERGEN:HBG108421 OrthoDB:EOG4SQWX4
TIGRFAMs:TIGR00539 OMA:WLGQLQE EMBL:AK002026 EMBL:AK022105
EMBL:AK222472 EMBL:BC005854 EMBL:BC050538 IPI:IPI00550335
RefSeq:NP_060816.1 UniGene:Hs.8033 ProteinModelPortal:Q9HA92
SMR:Q9HA92 IntAct:Q9HA92 STRING:Q9HA92 DMDM:145566941 PRIDE:Q9HA92
Ensembl:ENST00000258955 GeneID:55316 KEGG:hsa:55316 UCSC:uc002iqw.1
GeneCards:GC17P048556 HGNC:HGNC:25634 HPA:HPA022436 HPA:HPA022967
neXtProt:NX_Q9HA92 PharmGKB:PA134945325 InParanoid:Q9HA92
PhylomeDB:Q9HA92 GenomeRNAi:55316 NextBio:59563 ArrayExpress:Q9HA92
Bgee:Q9HA92 CleanEx:HS_RSAD1 Genevestigator:Q9HA92 Uniprot:Q9HA92
Length = 442
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 96/329 (29%), Positives = 167/329 (50%)
Query: 18 SLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGG 77
+LY+H+P+C K+C YC+F+ Y I + + E + L+ + + L + +++ ++F GGG
Sbjct: 41 ALYVHWPYCEKRCSYCNFNKY-IPRRLEEAAMQKCLVTEAQTLLRLSGVQRVESVFFGGG 99
Query: 78 TPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQS 137
TPSL S + +TLEANP++ + + G+NRLSIG+QS
Sbjct: 100 TPSLASPHTVAAVLEAVAQAAHLPADLEVTLEANPTSAPGSRLAEFGAAGVNRLSIGLQS 159
Query: 138 FNNKYLNILGRTHDSKQAKYAIEIAKQYF-NNFNLDLIYALPNQTLSELMLDLNYAIQYS 196
++ L +LGRTH + A + A++ F ++DL+ LP Q + + L + +
Sbjct: 160 LDDTELRLLGRTHSACDALRTLAEARRLFPGRVSVDLMLGLPAQQVGPWLGQLQELLHHC 219
Query: 197 PPHLSLYSLTIEPNTYFFKYPPL-SMPSNDEN--AVMQDKITSLLKNNYYKNYEISAYSK 253
HLSLY L++E T F ++P+ D A M + ++L+ + YE+S +++
Sbjct: 220 DDHLSLYQLSLERGTALFAQVQRGALPAPDPELAAEMYQRGRAVLREAGFHQYEVSNFAR 279
Query: 254 TGYESQHNLNYWKFGDYLGIGAGSHSKLSFPNYI---IRQIRYKN--PNIYLKNIFS-GN 307
G S HN YW+ G YLG+G G+H + P R+ R + P+ ++K + G+
Sbjct: 280 NGALSTHNWTYWQCGQYLGVGPGAHGRF-MPQGAGGHTREARIQTLEPDNWMKEVMLFGH 338
Query: 308 SIAKSKKIEKKCLIFEFMLNALRLKDGFS 336
K + + L+ E + LR G +
Sbjct: 339 GTRKRVPLGRLELLEEVLALGLRTDVGIT 367
>TIGR_CMR|CJE_0683 [details] [associations]
symbol:CJE_0683 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:195099 "Campylobacter jejuni RM1221"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR004559 InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0005737
GO:GO:0006779 GO:GO:0051536 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
KO:K02495 TIGRFAMs:TIGR00539 HOGENOM:HOG000015380 PIR:C81405
RefSeq:YP_178695.1 ProteinModelPortal:Q5HVJ0 STRING:Q5HVJ0
GeneID:3231995 KEGG:cjr:CJE0683 PATRIC:20043094 OMA:LAYWGAK
ProtClustDB:PRK08446 BioCyc:CJEJ195099:GJC0-700-MONOMER
Uniprot:Q5HVJ0
Length = 355
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 121/348 (34%), Positives = 176/348 (50%)
Query: 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPI--ILNRKIHTIFI 74
+ YIH P+C KC YC F S +KKN EK Y +AL D+ L I + +I T+FI
Sbjct: 1 MHFYIHIPFCESKCNYCAFTS--LKKNDYEKAYFKALKEDIVFQLKQFNIQSNQIKTLFI 58
Query: 75 GGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIG 134
GGGTPS ++ +Y I+ EANP++ + + +G+NR+S G
Sbjct: 59 GGGTPSCVN--AYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLKNMKNLGVNRISFG 116
Query: 135 IQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIY--ALPNQTLSEL-MLDLN 190
+QSF+ K L+ LGR H+ + +E A + F N NLDLIY L N+ + E +L L
Sbjct: 117 VQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDTKLDNKKMLEFELLHLK 176
Query: 191 YAIQYSPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISA 250
I+ HLS Y+LTIE NT F K N N +M+ I LL+ ++++ YEIS
Sbjct: 177 Q-IKDLITHLSAYNLTIESNTAFAKKEHFK--KNAPN-LMKFFIKQLLELDFFQ-YEISN 231
Query: 251 YSKTGYE-SQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSI 309
+SKT + +HNL YW+ +YL G S + F Y ++ Y N LKN +
Sbjct: 232 FSKTKAQICKHNLAYWQGKNYLACGL---SAVGF--YENKRF-YTAKN--LKNYIENPTF 283
Query: 310 AKSKKIEKKCLIFEFMLNALRLKDGFSPNLF--FERTGINIKIIESKL 355
+++ K L E + LR G +++ INI + E KL
Sbjct: 284 RSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKL 331
>UNIPROTKB|Q9KVM5 [details] [associations]
symbol:VC_0116 "Oxygen-independent coproporphyrinogen III
oxidase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004109 "coproporphyrinogen oxidase activity"
evidence=ISS] [GO:0006779 "porphyrin-containing compound
biosynthetic process" evidence=ISS] InterPro:IPR004558
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006779
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249 InterPro:IPR010723
Pfam:PF06969 TIGRFAMs:TIGR00538 HSSP:P32131 PIR:B82362
RefSeq:NP_229775.1 ProteinModelPortal:Q9KVM5 SMR:Q9KVM5
DNASU:2614871 GeneID:2614871 KEGG:vch:VC0116 PATRIC:20079276
Uniprot:Q9KVM5
Length = 480
Score = 283 (104.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 66/231 (28%), Positives = 108/231 (46%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLYIH P+C K C YC + + + +YL+ L ++ +++ R + + G
Sbjct: 75 PLSLYIHIPFCHKLCYYCGCNKVITRHSHKADEYLDVLEHEIRQRASLLIGRNVTQLHFG 134
Query: 76 GGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTP+ +++ + I++E +P ++E G NR+SIG+
Sbjct: 135 GGTPTFLTNAQISRLMTLLHSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
Q FN + ++ R D + +E AKQ F + NLDLIY LP QT L +
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQLGFRSTNLDLIYGLPKQTAVTFAQTLQQVLT 254
Query: 195 YSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDEN-AVMQDKITSLLKNNY 242
P LS+++ P + K +P+ +E A++Q IT+L Y
Sbjct: 255 MQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGY 305
>TIGR_CMR|VC_0116 [details] [associations]
symbol:VC_0116 "oxygen-independent coproporphyrinogen III
oxidase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 KO:K02495
OMA:HILNLMC ProtClustDB:PRK09249 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00538 HSSP:P32131 PIR:B82362 RefSeq:NP_229775.1
ProteinModelPortal:Q9KVM5 SMR:Q9KVM5 DNASU:2614871 GeneID:2614871
KEGG:vch:VC0116 PATRIC:20079276 Uniprot:Q9KVM5
Length = 480
Score = 283 (104.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 66/231 (28%), Positives = 108/231 (46%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLYIH P+C K C YC + + + +YL+ L ++ +++ R + + G
Sbjct: 75 PLSLYIHIPFCHKLCYYCGCNKVITRHSHKADEYLDVLEHEIRQRASLLIGRNVTQLHFG 134
Query: 76 GGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTP+ +++ + I++E +P ++E G NR+SIG+
Sbjct: 135 GGTPTFLTNAQISRLMTLLHSEFHFADEAEISIEIDPREIQLEVLDHLRQEGFNRVSIGV 194
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
Q FN + ++ R D + +E AKQ F + NLDLIY LP QT L +
Sbjct: 195 QDFNKEVQKLVNREQDEQFIFDLVERAKQLGFRSTNLDLIYGLPKQTAVTFAQTLQQVLT 254
Query: 195 YSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDEN-AVMQDKITSLLKNNY 242
P LS+++ P + K +P+ +E A++Q IT+L Y
Sbjct: 255 MQPGRLSVFNYAHMPQLFAAQRKIKEADLPAAEEKLAILQQTITTLTGAGY 305
>UNIPROTKB|P32131 [details] [associations]
symbol:hemN "coproporphyrinogen III dehydrogenase"
species:83333 "Escherichia coli K-12" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=IEA] [GO:0019353
"protoporphyrinogen IX biosynthetic process from glutamate"
evidence=IGI] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0051989 "coproporphyrinogen dehydrogenase
activity" evidence=IEA;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 UniPathway:UPA00251 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 EMBL:L19201
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0019353 GO:GO:0004109
EMBL:D16509 EMBL:X82073 RefSeq:NP_418303.2 RefSeq:YP_491583.1
PDB:1OLT PDBsum:1OLT ProteinModelPortal:P32131 SMR:P32131
DIP:DIP-9887N IntAct:P32131 PRIDE:P32131
EnsemblBacteria:EBESCT00000002593 EnsemblBacteria:EBESCT00000015724
GeneID:12933633 GeneID:948362 KEGG:ecj:Y75_p3319 KEGG:eco:b3867
PATRIC:32123235 EchoBASE:EB1782 EcoGene:EG11836 eggNOG:COG0635
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
BioCyc:EcoCyc:HEMN-MONOMER BioCyc:ECOL316407:JW3838-MONOMER
BioCyc:MetaCyc:HEMN-MONOMER EvolutionaryTrace:P32131
Genevestigator:P32131 GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969
TIGRFAMs:TIGR00538 Uniprot:P32131
Length = 457
Score = 270 (100.1 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 90/395 (22%), Positives = 171/395 (43%)
Query: 16 PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
PLSLY+H P+C K C +C + ++ +YL+AL ++ P+ R + + G
Sbjct: 52 PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWG 111
Query: 76 GGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
GGTP+ ++ + I++E +P E++ G NRLS+G+
Sbjct: 112 GGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGV 171
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
Q FN + ++ R D + + A++ F + N+DLIY LP QT L +
Sbjct: 172 QDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231
Query: 195 YSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDENA-VMQDKITSLLKNNYY-------- 243
+P LS+++ P + K +PS + ++Q+ I L ++ Y
Sbjct: 232 LNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFA 291
Query: 244 -KNYEISAYSKTGYESQHNLNYWKFGD--YLGIGAGSHSKLSFPNYIIRQIR----YKNP 296
+ E++ + G ++ Y GD LG+G + S + Y Q Y+
Sbjct: 292 RPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIG-DCYAQNQKELKQYYQQV 350
Query: 297 NIYLKNIFSGNSIAKSKKIEK---KCLIFEFMLNALRLKDGFSPNLFFERTGINIKIIES 353
+ ++ G ++ + I + K LI F L+ ++ + + F + ++K++
Sbjct: 351 DEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQWDLH-FADYFAEDLKLLAP 409
Query: 354 KLKNAEKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
K+ GL+ + K I+ T+ GR + ++ F
Sbjct: 410 LAKD----GLVDVDEKGIQVTAKGRLLIRNICMCF 440
>TIGR_CMR|SO_4520 [details] [associations]
symbol:SO_4520 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:211586 "Shewanella oneidensis MR-1"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0051989 KO:K00224
HOGENOM:HOG000001637 OMA:CHTLCSF ProtClustDB:PRK08629
RefSeq:NP_720040.1 ProteinModelPortal:Q8E8Y0 GeneID:1172110
KEGG:son:SO_4520 PATRIC:23528707 Uniprot:Q8E8Y0
Length = 445
Score = 257 (95.5 bits), Expect = 3.3e-20, P = 3.3e-20
Identities = 92/357 (25%), Positives = 156/357 (43%)
Query: 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT 78
LY H P+C C YC FH + K++ + Y +L ++E+ L +++IGGGT
Sbjct: 63 LYAHVPFCHTLCSYCTFHRFMFKED-KARAYFISLRKEMEMVKA--LGYDFESMYIGGGT 119
Query: 79 PSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138
+++ D + ++ E++P + F + ++R+SIG+QSF
Sbjct: 120 TTVLED---ELARTIEHAKTLFPSIKEVSCESDPQHLDSPGFKQLKGL-VDRMSIGVQSF 175
Query: 139 NNKYLNILGRTHD---SKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
N+ L + R +Q I AK+ F N+DLI+ QT + DL+ A +
Sbjct: 176 NDDILKMTDRLEKFGTGQQTFDKIMAAKELFPIINVDLIFGFRGQTDEVIQHDLDMASRL 235
Query: 196 SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 255
P ++ Y L I T L+ P D + + SL N Y A+ K
Sbjct: 236 DPRQITTYPLMITHQTRKSVKGKLAAPQADMANQYRQILNSL--NGQYNQLSAWAFGKAN 293
Query: 256 YES--QHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGN-SIAKS 312
E ++ ++Y +YLG+G+GS S L+ Y+ K Y + I +G + +
Sbjct: 294 DEGFDEYVIDY---DEYLGVGSGSFSFLNDTLYVNTFSLRK----YQERIAAGKMGVEQQ 346
Query: 313 KKIEKKCLI-FEFMLNALRLKDGFSPNLFFERTGINIKIIESKLKNAEKL-GLLKRN 367
K KK ++ + F+L + S F E G+N+ K + KL G +K +
Sbjct: 347 KNYNKKDVMQYRFLLGMFSGR--LSRKYFRETFGVNLDTALFKEMTSMKLIGAIKND 401
>TIGR_CMR|CPS_4823 [details] [associations]
symbol:CPS_4823 "oxygen-independent coproporphyrinogen III
oxidase" species:167879 "Colwellia psychrerythraea 34H" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
RefSeq:YP_271462.1 ProteinModelPortal:Q47UR0 SMR:Q47UR0
STRING:Q47UR0 GeneID:3518837 KEGG:cps:CPS_4823 PATRIC:21472461
BioCyc:CPSY167879:GI48-4824-MONOMER Uniprot:Q47UR0
Length = 456
Score = 240 (89.5 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 77/281 (27%), Positives = 123/281 (43%)
Query: 17 LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGG 76
LSLY+H P+C C YC + + YLE L ++ L P+ + + GG
Sbjct: 52 LSLYVHIPFCHTLCYYCGCNKVITRHRGKADTYLEYLAQEIALQAPLFEEYTVKQLHWGG 111
Query: 77 GTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKF-HSYSIIGINRLSIGI 135
GTPS ++ + +++E +P E++ H YS+ G NRLS+G+
Sbjct: 112 GTPSFLTHPQITQLVSLLKEKFNFSDELEMSIEIDPREIEMDLAEHLYSL-GFNRLSLGV 170
Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNYAIQ 194
Q + K + R ++ I+ AK+ F + N+DLIY LP+QTL L A +
Sbjct: 171 QDLDLKVQQAINRVQSTEFIGDFIQHAKEVGFKSINIDLIYGLPHQTLENFTKTLVKAHE 230
Query: 195 YSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDEN-AVMQDKITSLLKNNY--------- 242
+ +SL+S P+ + K +PS E A+M+ I +L Y
Sbjct: 231 WDVDRISLFSYAHIPSRFAAQRKLRDEWLPSTQEKFALMKLAIETLCDFGYDFIGMDHFA 290
Query: 243 YKNYEISAYSKTGYESQHNLNYWKFG--DYLGIGAGSHSKL 281
N E++ G ++ Y G D LG+G S S +
Sbjct: 291 KPNDELAIAQSDGTLHRNFQGYTTKGGCDLLGLGVSSISSI 331
>TIGR_CMR|CJE_0412 [details] [associations]
symbol:CJE_0412 "radical SAM domain protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:3.80.30.20
InterPro:IPR023404 eggNOG:COG0635 KO:K00224 RefSeq:YP_178431.1
ProteinModelPortal:Q5HWA4 STRING:Q5HWA4 GeneID:3231174
KEGG:cjr:CJE0412 PATRIC:20042524 HOGENOM:HOG000001637 OMA:CHTLCSF
ProtClustDB:PRK08629 BioCyc:CJEJ195099:GJC0-417-MONOMER
Uniprot:Q5HWA4
Length = 456
Score = 228 (85.3 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 93/375 (24%), Positives = 168/375 (44%)
Query: 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGT 78
LY H P+C CPYC FH Y +N++ K Y + L ++++ + ++++GGGT
Sbjct: 45 LYAHVPFCHTFCPYCSFHKYYYDENLA-KVYFQNLREEIKIMKDKGFD--FTSMYVGGGT 101
Query: 79 PSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQSF 138
+LI + L I+ E++P+ + K + I I+RLS GIQSF
Sbjct: 102 -TLIDEEEL---LKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGI-IDRLSCGIQSF 156
Query: 139 NNKYLNILGRTH---DSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
+++ L + R + SK+ + I A F++DLI+ LP Q +L+ DL A
Sbjct: 157 DDETLKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNL 216
Query: 196 SPPHLSLYSLTIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYSKTG 255
+P ++ Y L T L + D I K+ Y +N + +S +
Sbjct: 217 APQQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKD-YTQN---NGWSFSL 272
Query: 256 YESQHNLNYWK-FGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGNSIAKSKK 314
+++ N Y +YLG+G+G+ S L +I + +++ + N IAK+
Sbjct: 273 EKNKLNDEYVSSHHEYLGVGSGAFSFLD-GELLINAFNLNDYAKFIQEKQNAN-IAKACF 330
Query: 315 IEKKCLIFEFMLNALRLKDGFSPNLFFERTGINI-KIIESKLKNAEKLGLLKRNNKNIKP 373
+K+ + + F+ K + F + N+ K + +L + G + ++ +
Sbjct: 331 DKKEIIKYVFLTEIFSGK--IEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIA 388
Query: 374 TSFGRYFLNDLQQIF 388
T FG+Y L + F
Sbjct: 389 TEFGQYLFVVLMKDF 403
>TIGR_CMR|SO_4730 [details] [associations]
symbol:SO_4730 "oxygen-independent coproporphyrinogen III
oxidase" species:211586 "Shewanella oneidensis MR-1" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
GO:GO:0051989 InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
RefSeq:NP_720246.1 HSSP:P32131 ProteinModelPortal:Q8E8D5
GeneID:1172309 KEGG:son:SO_4730 PATRIC:23529123 Uniprot:Q8E8D5
Length = 458
Score = 218 (81.8 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 60/244 (24%), Positives = 102/244 (41%)
Query: 13 KLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTI 72
K LSLYIH P+C K C YC + + +Y+E L ++ P+ + + +
Sbjct: 50 KSDKLSLYIHIPFCAKLCYYCGCNKVITRHAHKADQYIEYLSHEIIKRAPLFKHYSVTQM 109
Query: 73 FIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLS 132
GGGTP+ ++ + ++E +P E+ + G NR+S
Sbjct: 110 HWGGGTPTFLNPEQIIKLTALIKANFNFADEGEFSIEVDPREIELSMLDTLKEAGFNRIS 169
Query: 133 IGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQTLSELMLDLNY 191
IG+Q FN + + R D + + AK F + N+DLIY LP+QT +
Sbjct: 170 IGVQDFNKEVQVAVNREQDEQFIFDLMAKAKAMGFVSTNIDLIYGLPHQTPETFAATMQR 229
Query: 192 AIQYSPPHLSLYSLTIEPNTYFF--KYPPLSMPSNDENAVMQDKITSLLKNNYYKNYEIS 249
+ SP LS+++ P + K +PS + M + L Y+ +
Sbjct: 230 VLDLSPDRLSVFNYAHLPARFAAQRKIKDEHLPSPKQKLEMLHQTIETLTGAGYQYIGMD 289
Query: 250 AYSK 253
++K
Sbjct: 290 HFAK 293
>TIGR_CMR|CJE_1072 [details] [associations]
symbol:CJE_1072 "oxygen-independent coproporphyrinogen III
oxidase" species:195099 "Campylobacter jejuni RM1221" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 GO:GO:0006779
GO:GO:0051536 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109 eggNOG:COG0635
HOGENOM:HOG000257214 KO:K02495 OMA:HILNLMC ProtClustDB:PRK09249
InterPro:IPR010723 Pfam:PF06969 TIGRFAMs:TIGR00538
RefSeq:YP_179065.1 ProteinModelPortal:Q5HUH0 STRING:Q5HUH0
GeneID:3231581 KEGG:cjr:CJE1072 PATRIC:20043953
BioCyc:CJEJ195099:GJC0-1098-MONOMER Uniprot:Q5HUH0
Length = 451
Score = 216 (81.1 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 62/261 (23%), Positives = 112/261 (42%)
Query: 2 KYKRFNNLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSL 61
KY+ + + K+ LSLY H P+C C +C + K S+++YL + ++++
Sbjct: 31 KYEEYIEILKKQDRSLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILS 90
Query: 62 PII-LNRKIHTIFIGGGTPSLISDTGL-DYXXXXXXXXXXXXXXXSITLEANPSTFEIEK 119
I+ R++ + GGGTP+ S L + I+ E +P E+
Sbjct: 91 TILDTKREVVQMHFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDVEISCEIDPRFLNEEQ 150
Query: 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALP 178
+ G NR+S G+Q F+ K + R + + A+ + + + N+DLIY LP
Sbjct: 151 ATVLTQNGFNRISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRNKGIKSVNMDLIYGLP 210
Query: 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEP--NTYFFKYPPLSMPSNDENAVMQDKITS 236
Q L L + +P L++++ P K+ ++PS D + +
Sbjct: 211 YQNLQSFTQTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEK 270
Query: 237 LLKNNYYKNYEISAYSKTGYE 257
L N YK + ++K E
Sbjct: 271 FLSKNGYKMIGMDHFAKENDE 291
>UNIPROTKB|Q9KL39 [details] [associations]
symbol:VCA0909 "Oxygen-independent coproporphyrinogen III
oxidase, putative" species:243277 "Vibrio cholerae O1 biovar El Tor
str. N16961" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006638
InterPro:IPR007197 Pfam:PF04055 SMART:SM00729 GO:GO:0003824
GO:GO:0008152 GO:GO:0051536 GenomeReviews:AE003853_GR
Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495 EMBL:AE004418
PIR:C82403 RefSeq:NP_233294.1 ProteinModelPortal:Q9KL39
DNASU:2612225 GeneID:2612225 KEGG:vch:VCA0909 PATRIC:20086354
OMA:LSVNHWA ProtClustDB:PRK09058 InterPro:IPR026332
TIGRFAMs:TIGR04107 Uniprot:Q9KL39
Length = 455
Score = 215 (80.7 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 74/302 (24%), Positives = 127/302 (42%)
Query: 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVE--LSLPIILNRKIHTIFIGG 76
LYIH P+C +C +C+F + + + Y ALL +++ +LP H ++IGG
Sbjct: 66 LYIHVPFCRVRCTFCNFFQNAASRQLVDA-YFAALLEEIKQKAALPWTQTGVFHAVYIGG 124
Query: 77 GTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
GTP+ +S + ITLE F E F + G NR S G+Q
Sbjct: 125 GTPTELSPEQIRQLGTAIRESFPLTPDCEITLEGRIHRFSDEMFENALEGGFNRFSFGVQ 184
Query: 137 SFNNKYLNILGRTHDSKQAKYAI-EIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
SFN + R D + I +A +DL+Y LP QT DL +Q
Sbjct: 185 SFNTQVRRRAKRLDDREVVMERIASLAATQQAPIVIDLLYGLPYQTAQVFEQDLQDFMQT 244
Query: 196 SPPHLSLYSLTIEPNTYFFKY-------PPLSMPSNDENAVMQDKITSLLKNNYYKNYEI 248
+ LY L + + PP + P D+ ++ Q + + K+ + + +
Sbjct: 245 GAQGIDLYQLVVGGSAPMLNLVEKGKLPPPATTP--DKASLYQIGVEFMAKH-HLRPLSV 301
Query: 249 SAYSKTGYE-SQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGN 307
+ +++ E S +N + + L IG G+ + Y + Q ++ + YL + +G
Sbjct: 302 NHWTRDNRERSLYNSLAKTYAEVLPIGCGAGGNMG--GYSLMQ--HRQLDTYLDAMKNGQ 357
Query: 308 SI 309
+
Sbjct: 358 PL 359
>TIGR_CMR|VC_A0909 [details] [associations]
symbol:VC_A0909 "hutW protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0003824 GO:GO:0008152 GO:GO:0051536 GenomeReviews:AE003853_GR
Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495 EMBL:AE004418
PIR:C82403 RefSeq:NP_233294.1 ProteinModelPortal:Q9KL39
DNASU:2612225 GeneID:2612225 KEGG:vch:VCA0909 PATRIC:20086354
OMA:LSVNHWA ProtClustDB:PRK09058 InterPro:IPR026332
TIGRFAMs:TIGR04107 Uniprot:Q9KL39
Length = 455
Score = 215 (80.7 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 74/302 (24%), Positives = 127/302 (42%)
Query: 19 LYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVE--LSLPIILNRKIHTIFIGG 76
LYIH P+C +C +C+F + + + Y ALL +++ +LP H ++IGG
Sbjct: 66 LYIHVPFCRVRCTFCNFFQNAASRQLVDA-YFAALLEEIKQKAALPWTQTGVFHAVYIGG 124
Query: 77 GTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEKFHSYSIIGINRLSIGIQ 136
GTP+ +S + ITLE F E F + G NR S G+Q
Sbjct: 125 GTPTELSPEQIRQLGTAIRESFPLTPDCEITLEGRIHRFSDEMFENALEGGFNRFSFGVQ 184
Query: 137 SFNNKYLNILGRTHDSKQAKYAI-EIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQY 195
SFN + R D + I +A +DL+Y LP QT DL +Q
Sbjct: 185 SFNTQVRRRAKRLDDREVVMERIASLAATQQAPIVIDLLYGLPYQTAQVFEQDLQDFMQT 244
Query: 196 SPPHLSLYSLTIEPNTYFFKY-------PPLSMPSNDENAVMQDKITSLLKNNYYKNYEI 248
+ LY L + + PP + P D+ ++ Q + + K+ + + +
Sbjct: 245 GAQGIDLYQLVVGGSAPMLNLVEKGKLPPPATTP--DKASLYQIGVEFMAKH-HLRPLSV 301
Query: 249 SAYSKTGYE-SQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKNIFSGN 307
+ +++ E S +N + + L IG G+ + Y + Q ++ + YL + +G
Sbjct: 302 NHWTRDNRERSLYNSLAKTYAEVLPIGCGAGGNMG--GYSLMQ--HRQLDTYLDAMKNGQ 357
Query: 308 SI 309
+
Sbjct: 358 PL 359
>TIGR_CMR|BA_0875 [details] [associations]
symbol:BA_0875 "oxygen-independent coproporphyrinogen III
oxidase, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0004109 "coproporphyrinogen oxidase activity" evidence=ISS]
[GO:0006779 "porphyrin-containing compound biosynthetic process"
evidence=ISS] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0008152
GO:GO:0051536 Gene3D:3.80.30.20 InterPro:IPR023404 KO:K02495
RefSeq:NP_843387.1 RefSeq:YP_017511.1 ProteinModelPortal:Q81UJ4
DNASU:1088750 EnsemblBacteria:EBBACT00000012337
EnsemblBacteria:EBBACT00000015974 GeneID:1088750 GeneID:2815394
KEGG:ban:BA_0875 KEGG:bar:GBAA_0875 PATRIC:18779392
HOGENOM:HOG000057172 OMA:TGIRPTK ProtClustDB:PRK08207
BioCyc:BANT261594:GJ7F-941-MONOMER InterPro:IPR023995
TIGRFAMs:TIGR03994 Uniprot:Q81UJ4
Length = 496
Score = 200 (75.5 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 67/248 (27%), Positives = 112/248 (45%)
Query: 8 NLYIKKLPPLSLYIHFPWCIKKCPYCDFHSYEIK-KNISEKKYLEALLIDVELSLPIILN 66
+LY K +S+YI P+C KC YC F +Y I + S +L L +V + L
Sbjct: 164 DLYRLK-EEVSIYIGIPFCPTKCAYCTFPAYAINGRQGSVDSFLGGLHYEVR-EIGKFLK 221
Query: 67 RK---IHTIFIGGGTPSLISDTGLDYXXXXXXXXX-XXXXXXSITLEAN-PSTFEIEKFH 121
K + TI+ GGGTP+ I+ +D +T+EA P T K
Sbjct: 222 EKGVTVTTIYYGGGTPTSITAEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLE 281
Query: 122 SYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQY-FNNFNLDLIYALPNQ 180
+ I+R+SI QS++ + L +GR H ++ +A++ NN N+DLI LP +
Sbjct: 282 VLNKWNIDRISINPQSYHQETLKAIGRHHTVEETIEKYHLAREMGMNNINMDLIIGLPGE 341
Query: 181 TLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP-PLSMPSNDE-NAVMQDKITSLL 238
L L+ + P L++++L+ + + + + +E A+M +
Sbjct: 342 GLDIFKHTLDETEKLMPESLTVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQ 401
Query: 239 KNNYYKNY 246
K+NY Y
Sbjct: 402 KHNYVPYY 409
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 53/212 (25%), Positives = 93/212 (43%)
Query: 106 ITLEAN-PSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAKQ 164
+T+EA P T K + I+R+SI QS++ + L +GR H ++ +A++
Sbjct: 265 VTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETLKAIGRHHTVEETIEKYHLARE 324
Query: 165 Y-FNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSLTIEPNTYFFKYP-PLSMP 222
NN N+DLI LP + L L+ + P L++++L+ + + + +
Sbjct: 325 MGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESLTVHTLSFKRASEMTQNKRKYKVA 384
Query: 223 SNDE-NAVMQDKITSLLKNNY-----YK------NYEISAYSKTGYESQHNLNYWK-FGD 269
+E A+M + K+NY Y+ N E Y+ ES +N+ +
Sbjct: 385 GREEITAMMHEAEEWTQKHNYVPYYLYRQKNILGNLENVGYAMPTQESIYNIVIMEEVQS 444
Query: 270 YLGIGAGSHSKLSFPNY--IIRQIRYKNPNIY 299
+G+G G+ SK P I K+P Y
Sbjct: 445 IIGLGCGASSKFVHPKTGAITHFANPKDPKSY 476
>TIGR_CMR|SPO_3532 [details] [associations]
symbol:SPO_3532 "oxygen-independent coproporphyrinogen III
oxidase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004109
"coproporphyrinogen oxidase activity" evidence=ISS] [GO:0006779
"porphyrin-containing compound biosynthetic process" evidence=ISS]
InterPro:IPR004558 InterPro:IPR006638 InterPro:IPR007197
Pfam:PF04055 SMART:SM00729 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006779 GO:GO:0051536
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0004109
HOGENOM:HOG000257214 KO:K02495 ProtClustDB:PRK09249
TIGRFAMs:TIGR00538 RefSeq:YP_168727.1 ProteinModelPortal:Q5LMN1
GeneID:3193999 KEGG:sil:SPO3532 PATRIC:23380535 OMA:ISRFPQG
Uniprot:Q5LMN1
Length = 451
Score = 184 (69.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 49/211 (23%), Positives = 100/211 (47%)
Query: 5 RFNNLYIKKLPP---LSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSL 61
RF + +I + P +SLY+H P+C + C +C + + + Y++ L ++ L L
Sbjct: 37 RFGD-WISGIAPGSAISLYVHVPFCRRLCWFCACRTQGTQTDNPVIAYVDTLKAELAL-L 94
Query: 62 PIILNRKIHT--IFIGGGTPSLISDTGLDYXXXXXXXXXXXXXXXSITLEANPSTFEIEK 119
L +H + GGGTP+L++ + ++E +P+ + +
Sbjct: 95 AERLPEGVHLSRLHWGGGTPTLLNPELMRGLARSIFDTVPLGPEAEFSVEIDPNEIDPAR 154
Query: 120 FHSYSIIGINRLSIGIQSFNNKYLNILGRTHDSKQAKYAIEIAK-QYFNNFNLDLIYALP 178
+ + G+NR SIG+Q F+++ +GR + A+E+ + + + N D++Y LP
Sbjct: 155 LDALAEAGMNRASIGVQDFDDEIQKTIGRIQGYDVTRDAVEMIRARGIYSLNADILYGLP 214
Query: 179 NQTLSELMLDLNYAIQYSPPHLSLYSLTIEP 209
+QT + + + + +P ++LY P
Sbjct: 215 HQTRARMTESVQKLLSLNPDRVALYGYAHVP 245
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 391 376 0.00088 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 596 (63 KB)
Total size of DFA: 233 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.54u 0.13s 32.67t Elapsed: 00:00:01
Total cpu time: 32.54u 0.13s 32.67t Elapsed: 00:00:01
Start: Thu Aug 15 14:18:22 2013 End: Thu Aug 15 14:18:23 2013