RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2383
         (391 letters)



>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
           oxidase HemN {Escherichia coli [TaxId: 562]}
          Length = 441

 Score =  203 bits (516), Expect = 1e-61
 Identities = 82/390 (21%), Positives = 163/390 (41%), Gaps = 18/390 (4%)

Query: 16  PLSLYIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIG 75
           PLSLY+H P+C K C +C  +    ++     +YL+AL  ++    P+   R +  +  G
Sbjct: 49  PLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWG 108

Query: 76  GGTPSLISDTGLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGI 135
           GGTP+ ++   +  L+K +++   F  +  I++E +P   E++        G NRLS+G+
Sbjct: 109 GGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGV 168

Query: 136 QSFNNKYLNILGRTHDSKQAKYAIEIAKQYFNNF-NLDLIYALPNQTLSELMLDLNYAIQ 194
           Q FN +   ++ R  D +     +  A++      N+DLIY LP QT       L    +
Sbjct: 169 QDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 228

Query: 195 YSPPHLSLYSLTIEPNTYFFKY--PPLSMPSNDENAVMQDKITSLLKNNYYKNYEISAYS 252
            +P  LS+++    P  +  +       +PS  +   +  +  + L  + Y+   +  ++
Sbjct: 229 LNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFA 288

Query: 253 KTGYE----------SQHNLNYWKFGDYLGIGAGSHSKLSFPNYIIRQIRYKNPNIYLKN 302
           +   E           ++   Y   GD   +G    S +S       Q + +    Y + 
Sbjct: 289 RPDDELAVAQREGVLHRNFQGYTTQGDTDLLGM-GVSAISMIGDCYAQNQKELKQYYQQV 347

Query: 303 IFSGNSIAKSKKIEKKCLIFEFMLNALRLKDGFSPNLFFERTGINIK----IIESKLKNA 358
              GN++ +   + +   I   ++ +L        +   ++  +            L   
Sbjct: 348 DEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPL 407

Query: 359 EKLGLLKRNNKNIKPTSFGRYFLNDLQQIF 388
            K GL+  + K I+ T+ GR  + ++   F
Sbjct: 408 AKDGLVDVDEKGIQVTAKGRLLIRNICMCF 437


>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 69

 Score = 27.3 bits (61), Expect = 0.72
 Identities = 7/43 (16%), Positives = 17/43 (39%)

Query: 342 ERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYFLNDL 384
           ER  +    + + L+    L +++   +    T  G+   + L
Sbjct: 25  ERLELGEGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKL 67


>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 90

 Score = 27.3 bits (61), Expect = 0.88
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 322 FEFMLNALR-LKDGFSPNLFFERTGINIKIIESKLKNAEKLGLLKRNNKNIKPTSFGRYF 380
            E +   L   K G           ++  +    +K    L ++++  K    T  G   
Sbjct: 5   LEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEEL 64

Query: 381 LNDLQQI 387
           L D+++ 
Sbjct: 65  LEDIRKF 71


>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
           [TaxId: 1423]}
          Length = 195

 Score = 28.6 bits (62), Expect = 1.2
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 7/79 (8%)

Query: 20  YIHFPWCIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTP 79
                +   K           K +   K   +     V  +L I    ++          
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF------- 174

Query: 80  SLISDTGLDYLLKNIKKLL 98
           S  +  G D     IKK++
Sbjct: 175 SSETKKGKDEAWGAIKKMI 193


>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
           synthase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 26.2 bits (58), Expect = 5.6
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 207 IEPNTYFFKYPPLSMPSND 225
           I  + Y  K PP  +P + 
Sbjct: 214 IPASAYLMKSPPEQLPDDI 232


>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId:
           562]}
          Length = 312

 Score = 26.5 bits (57), Expect = 6.3
 Identities = 19/216 (8%), Positives = 54/216 (25%), Gaps = 11/216 (5%)

Query: 26  CIKKCPYCDFHSYEIKKNISEKKYLEALLIDVELSLPIILNRKIHTIFIGGGTPSLISDT 85
           C + C YC        +  +  +    + ++  L           T F  G       + 
Sbjct: 50  CPEDCKYCPQS----SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHER 105

Query: 86  GLDYLLKNIKKLLLFKKNISITLEANPSTFEIEKFHSYSIIGINRLSIGIQSFNNKYLNI 145
            + YL + ++      K + +       T    +    +  G++  +  + +    +   
Sbjct: 106 DMPYLEQMVQG----VKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPE-FYGN 160

Query: 146 LGRTHDSKQAKYAIEIAKQYFNNFNLDLIYALPNQTLSELMLDLNYAIQYSPPHLSLYSL 205
           +  T   ++    +E  +          I  L      +    L   +   P       +
Sbjct: 161 IITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETV--KDRAGLLLQLANLPTPPESVPI 218

Query: 206 TIEPNTYFFKYPPLSMPSNDENAVMQDKITSLLKNN 241
            +                  +          ++  +
Sbjct: 219 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTS 254


>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 367

 Score = 26.1 bits (57), Expect = 8.0
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 253 KTGYESQHNLNYWKFGD--YLGIGAGSHSKLSFPNY---IIRQIRYKNPNIYLKNIFSGN 307
             GY+  H +  W  G+        G  + + +        + +++ +P I L  +  G+
Sbjct: 141 AHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKVMKWVDPTIEL--VVCGS 198

Query: 308 S 308
           S
Sbjct: 199 S 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,520,381
Number of extensions: 75541
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 19
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)