BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2386
(311 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|409407337|ref|ZP_11255788.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
gi|386433088|gb|EIJ45914.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]
Length = 329
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 188/314 (59%), Positives = 241/314 (76%), Gaps = 5/314 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ +EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 62 LAHSARLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRDAVSIDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGIKT EID HL ++DGVMLGREAY NP+LM++FD YY LP +
Sbjct: 182 LKQDFPDLEILINGGIKTLPEIDEHLRHVDGVMLGREAYHNPYLMASFDARYYGELPGGR 241
Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
P+R ++I M+ YI++QL +N + +NSITRHMLGL+ + G+ F+Q LS
Sbjct: 242 QPSRAEVIAAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSKR 301
Query: 296 LTIDNFQFFLNTLN 309
L + + L L
Sbjct: 302 LALGDPALLLEALQ 315
>gi|415944436|ref|ZP_11556234.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
gi|407758516|gb|EKF68332.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]
Length = 323
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/314 (60%), Positives = 239/314 (76%), Gaps = 5/314 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ +EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 62 LAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRDAVSIDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGIDQVESYDFVRDFVGQIADAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFPELEI+INGGIKT EID HL ++DGVMLGREAY NP+LM+ FD YY +L +
Sbjct: 182 LKKDFPELEILINGGIKTLPEIDEHLLHVDGVMLGREAYHNPYLMAAFDARYYGDLEGGR 241
Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
P+R ++I M+ YI++QL +N + +NSITRHMLGL+ + G+ F+Q LS
Sbjct: 242 QPSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSKR 301
Query: 296 LTIDNFQFFLNTLN 309
L + + L L
Sbjct: 302 LALGDPALLLEALQ 315
>gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1]
gi|300075667|gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length = 357
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/314 (59%), Positives = 237/314 (75%), Gaps = 5/314 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ +EHP+A Q+G +EP
Sbjct: 33 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 92
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 93 LAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVTV 152
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID++ SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 153 KHRIGIDEVESYDFVRDFVGQIAEAGCQTFIVHARNAILKGLSPKENREIPPLKYDYAYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP LEI+INGGIKT EID HL ++DGVMLGREAY NP+LM+ FD YY+ L
Sbjct: 213 LKKDFPSLEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMAGFDARYYAALEGGL 272
Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
+R ++I M+ YI++QL +N + +NSITRHMLGLM + G+ F+Q LS
Sbjct: 273 QRSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLMAGMPGARAFRQTLSDSKR 332
Query: 296 LTIDNFQFFLNTLN 309
L + + L L
Sbjct: 333 LALGDPALLLEALQ 346
>gi|398832210|ref|ZP_10590374.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
gi|398223747|gb|EJN10082.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]
Length = 328
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/315 (59%), Positives = 237/315 (75%), Gaps = 7/315 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDFN EEHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 61 LAQAARLGQQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + SYDFVRDFVG ++ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGIDSVESYDFVRDFVGQIADAGCHTFIVHARNAILKGLSPKENREIPPLKYDYAYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGIKT EID HL ++DGVMLGREAY NP+LM+ FD YY +LP +
Sbjct: 181 LKRDFPQLEILINGGIKTVAEIDAHLQHVDGVMLGREAYHNPYLMAGFDARYYGDLPHGR 240
Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKN--INSITRHMLGLMKNIKGSNKFKQILSKP 293
+R +I M+ YIR+QL +N + +NSITRHMLGL+ + G+ F+Q LS
Sbjct: 241 QASREQVIAAMLPYIRRQLALHGDNGRGGGLRLNSITRHMLGLLAGMPGARAFRQTLSDS 300
Query: 294 NLLTIDNFQFFLNTL 308
L + + L
Sbjct: 301 KRLAEGDPELLHEAL 315
>gi|399017469|ref|ZP_10719661.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
gi|398103343|gb|EJL93514.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]
Length = 322
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/314 (60%), Positives = 234/314 (74%), Gaps = 5/314 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ L+FN EEHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLYGDVGRHLNFNEEEHPVALQLGGSEPVD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 61 LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMAEPTLVADCVKAMRDAVSIDVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SYDFVRDFVG ++ AG +TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGIDDVESYDFVRDFVGKIAEAGSKTFIVHARNAVLKGLSPKENREIPPLKYDYAYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI+INGGIKT EID HL ++DGVMLGREAY NPFLM+ FD YY+ L
Sbjct: 181 LKRDFPELEILINGGIKTVAEIDEHLKHVDGVMLGREAYHNPFLMAGFDARYYAELDGGV 240
Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
R ++I M+ Y QL + K +NSITRHMLGLM + G+ F+Q LS
Sbjct: 241 QANRSEVIEAMMAYASAQLALHGDGGKGLRLNSITRHMLGLMAGMPGARAFRQTLSDSKR 300
Query: 296 LTIDNFQFFLNTLN 309
L + + + L+
Sbjct: 301 LALGDPALLMEALS 314
>gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. Marseille]
gi|151280873|gb|ABR89283.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
Length = 344
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/315 (62%), Positives = 232/315 (73%), Gaps = 9/315 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCRMFHRQITR++WLYTEM TT A+L G+ LDFN EEHP+A Q+G +EP
Sbjct: 24 MDWTDRHCRMFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPAD 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ ++WGYDE+NLNCGCPS RVQ G FGA LM + LV+DC+KAMRD+V ID+TV
Sbjct: 84 LAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLVADCVKAMRDAVSIDVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDDI SYDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y F Y
Sbjct: 144 KHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLSPKENREIPPLRYEFAYQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP LEIIINGG KT EID HL ++DGVMLGREAY NPFLMS FD YY + K
Sbjct: 204 LKKDFPALEIIINGGTKTVAEIDTHLQHVDGVMLGREAYHNPFLMSTFDARYYGDDATSK 263
Query: 240 IPTRIDIINRMILYIRQQLN-NNKIK-----NINSITRHMLGLMKNIKGSNKFKQILSKP 293
TR +++ MI YI QL + K + +NSITRHMLGLM + S F+Q LS
Sbjct: 264 --TRAEVVQAMIPYIHAQLQLHGKSEKGGGLKVNSITRHMLGLMAGLPNSRAFRQTLSDS 321
Query: 294 NLLTIDNFQFFLNTL 308
L + + L L
Sbjct: 322 KKLALGDPDLLLQAL 336
>gi|134095593|ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
gi|133739496|emb|CAL62547.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]
Length = 338
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/315 (61%), Positives = 234/315 (74%), Gaps = 9/315 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCRMFHRQITR++W YTEM TT A+L G+ LDFN EEHP+A Q+G +EP
Sbjct: 17 MDWTDRHCRMFHRQITRHTWFYTEMVTTGALLHGDVSRHLDFNHEEHPVALQLGGSEPAD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAMRD+V+ID+TV
Sbjct: 77 LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEAALVADCVKAMRDAVQIDVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDDI SYDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP L+Y F Y
Sbjct: 137 KHRIGIDDIASYDFVRDFVGTVAEAGCNTFIVHARNAVLKGLSPKENREIPPLRYEFAYQ 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT EID HL ++DGVMLGREAY NP+LMS FD YY ++ K
Sbjct: 197 LKQDFPQLEIIINGGIKTLAEIDTHLVHVDGVMLGREAYHNPYLMSAFDARYYGDIAAPK 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKN------INSITRHMLGLMKNIKGSNKFKQILSKP 293
+R +++ M+ YIR QL + +NSITRHMLGLM + + F+Q LS
Sbjct: 257 --SRAQVLHAMLPYIRAQLELHGKSEKGGGLRLNSITRHMLGLMAGLPNARGFRQSLSDS 314
Query: 294 NLLTIDNFQFFLNTL 308
L + + L L
Sbjct: 315 KKLALGDPDLLLQAL 329
>gi|340788618|ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
gi|340553885|gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]
Length = 338
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 233/313 (74%), Gaps = 6/313 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +E
Sbjct: 19 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFSDVEHPVALQLGGSESAD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ Q+WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAMRD+V ID+TV
Sbjct: 79 LAKSAKLGQEWGYDEINLNCGCPSERVQKGAFGACLMAEAELVADCVKAMRDAVSIDVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+FVRDFVGTV+ AGC+TFIVHARNA LK L+PK+NR+IP LKY + Y
Sbjct: 139 KHRIGIDKTESYEFVRDFVGTVAQAGCQTFIVHARNAILKGLSPKENREIPPLKYEYAYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
L +DFPELEIIING IKT +EID HL Y+DGVMLGREAY NP+LM++FD YY
Sbjct: 199 LARDFPELEIIINGAIKTTEEIDFHLQYVDGVMLGREAYHNPYLMADFDSRYY-GAADAA 257
Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR ++I M+ YIRQQL ++ K +NSITRHMLGLM + G+ F+Q LS
Sbjct: 258 PKTRAEVIEAMLPYIRQQLALHGHDGKGLRLNSITRHMLGLMAGVPGAKSFRQALSDSKR 317
Query: 296 LTIDNFQFFLNTL 308
L + + + + L
Sbjct: 318 LALGDPRLLTDAL 330
>gi|395761105|ref|ZP_10441774.1| tRNA-dihydrouridine synthase A [Janthinobacterium lividum PAMC
25724]
Length = 317
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/316 (59%), Positives = 237/316 (75%), Gaps = 7/316 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR+ITR++WLYTEM TT A++ G+ + L FN EEHP+A Q+G ++P
Sbjct: 2 MDWTDRHCRKFHREITRHTWLYTEMVTTGALVYGDVERHLRFNEEEHPVALQLGGSDPTD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V+ID+TV
Sbjct: 62 LATSAKLGQQWGYDEVNLNCGCPSERVQKGAFGACLMAEPQLVADCVKAMRDVVDIDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD SYDFVRDFVGTV+ AGC+TFIVHARNA LK L+PK+NR++P LKY++ Y
Sbjct: 122 KHRIGIDDSESYDFVRDFVGTVADAGCKTFIVHARNAILKGLSPKENREVPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ E IINGGIKT EIDLHL ++DGVMLGREAY NP+LM+ FD YY +
Sbjct: 182 LKRDFPQFEFIINGGIKTLDEIDLHLQHLDGVMLGREAYHNPYLMAQFDQRYYGD--DTP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIK-NINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+ TR ++ MI YIR QL + +NS+TRHMLGLM+N+ G+ F+Q LS L
Sbjct: 240 VKTREQVLEVMIPYIRVQLEKEAGRLKLNSVTRHMLGLMQNLPGARGFRQTLSDSKKLAS 299
Query: 299 DNFQFFLNT---LNIP 311
+ + L L++P
Sbjct: 300 GDPRLLLEAAARLSLP 315
>gi|445495230|ref|ZP_21462274.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
gi|444791391|gb|ELX12938.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]
Length = 341
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/307 (59%), Positives = 230/307 (74%), Gaps = 5/307 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR I++++WLYTEM TT A++ G+ + L FN EEHP+A Q+G ++P
Sbjct: 26 MDWTDRHCRVFHRHISQHTWLYTEMVTTGALVYGDVERHLRFNDEEHPVALQLGGSDPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ +KWGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 86 LATSAKLGEKWGYDEINLNCGCPSERVQKGAFGACLMAEPQLVADCVKAMRDAVSIDVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GID SYDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY F Y
Sbjct: 146 KHRVGIDQTESYDFVRDFVGTVAEAGCTTFIVHARNAILKGLSPKENREIPPLKYEFAYQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ EIIINGGIKT+ EID HL ++DGVMLGREAY NPF+M+ FD YY + K
Sbjct: 206 LKRDFPDFEIIINGGIKTEAEIDEHLKHLDGVMLGREAYHNPFVMAGFDQRYYGDSRAPK 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKN--INSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R ++I MI YI+ QL + +N+ITRHMLGLM + G+ F+Q+LS L
Sbjct: 266 --SREEVIEAMIPYIQAQLALHGAHGLKLNTITRHMLGLMTGLPGARAFRQVLSDSKKLA 323
Query: 298 IDNFQFF 304
+ +
Sbjct: 324 LGDAHLL 330
>gi|427402986|ref|ZP_18893983.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
gi|425718169|gb|EKU81120.1| tRNA dihydrouridine synthase A [Massilia timonae CCUG 45783]
Length = 344
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/309 (56%), Positives = 231/309 (74%), Gaps = 3/309 (0%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQITR++WLYTEM TT A++ G+ + L ++ EHP+A Q+G ++P
Sbjct: 27 MDWTDRHCRVFHRQITRHTWLYTEMVTTGALVYGDVERHLRYDDVEHPVALQLGGSDPAD 86
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 87 LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEPQLVADCVKAMRDAVSIDVTV 146
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID Y FVRDFVGT++ AGC+TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 147 KHRIGIDYDEEYGFVRDFVGTIADAGCKTFIVHARNAVLKGLSPKENREIPPLRYAVAYQ 206
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+LEI+INGGIK+ EI LHL ++DGVMLGREAY NP+ M+++D +Y + +
Sbjct: 207 LKREFPDLEILINGGIKSDDEIALHLQHVDGVMLGREAYHNPWTMADWDRRFYGDAGAGR 266
Query: 240 IPTRIDIINRMILYIRQQLN--NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R++++ MI YI +QL +NSITRHMLGLM+ + G+ F+Q LS L
Sbjct: 267 PRSRVEVLEAMIPYIEEQLRLYGPLGLKLNSITRHMLGLMQGLPGARSFRQTLSDSKKLA 326
Query: 298 IDNFQFFLN 306
+ + + L
Sbjct: 327 LGDPRLLLE 335
>gi|237748250|ref|ZP_04578730.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
gi|229379612|gb|EEO29703.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes OXCC13]
Length = 330
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/311 (55%), Positives = 227/311 (72%), Gaps = 5/311 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR I+R++WLYTEM TT A+L G+ LDF+ EEHPIA Q+G +EP
Sbjct: 17 LDWTDRHCRYFHRLISRHTWLYTEMVTTGALLFGDVARHLDFSEEEHPIALQLGGSEPGD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ +KWGYDEINLNCGCPS RVQ G FGA LM++ LV++C+KAM+D+V ID+TV
Sbjct: 77 LAQCARLGEKWGYDEINLNCGCPSERVQKGAFGACLMSESTLVANCVKAMQDAVSIDVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SYDFVRDF+G V+ AGC+TFIVHARNA LK L+P++NR+IP L+Y VY
Sbjct: 137 KHRIGIDKNESYDFVRDFIGEVAEAGCKTFIVHARNAILKGLSPRENREIPPLRYEVVYQ 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFPELEI++NGGI+T E+ H+ ++DGVM+GR AY P+ M+ FD +Y +
Sbjct: 197 LKKDFPELEILLNGGIETADEVGEHIKHVDGVMIGRAAYHYPYRMAEFDARFYDDPTTAT 256
Query: 240 IPTRIDIINRMILYIRQQLN--NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ M+ YI +QL+ +K ++ ITRHMLGLM + G+ +F+QILS P L
Sbjct: 257 TPA--DVVKAMMPYIEKQLSLYGSKGLKMHGITRHMLGLMTGLPGARRFRQILSDPTKLA 314
Query: 298 IDNFQFFLNTL 308
N L L
Sbjct: 315 SGNPAVLLEAL 325
>gi|344170016|emb|CCA82390.1| tRNA-dihydrouridine synthase A [blood disease bacterium R229]
Length = 326
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 227/312 (72%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEMEHPVALQLGGSEPGD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 61 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVKAMRDTVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 121 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI++NGG++ ++ID HL ++DGVM+GREAY++P LM++FD YY
Sbjct: 181 LKRDFPQLEILLNGGVQALEQIDAHLAHVDGVMIGREAYRHPHLMASFDARYYG--ADTV 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL--- 296
PTR ++ + M+ YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 239 APTRAEVEDAMVDYIGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRV 296
Query: 297 -TIDNFQFFLNT 307
T+D+ + T
Sbjct: 297 KTLDDARALFET 308
>gi|83749666|ref|ZP_00946647.1| NIFR3-like protein [Ralstonia solanacearum UW551]
gi|83723668|gb|EAP70865.1| NIFR3-like protein [Ralstonia solanacearum UW551]
Length = 344
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/312 (54%), Positives = 224/312 (71%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 19 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 79 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 139 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 199 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYGA--DTV 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL--- 296
PTR ++ + MI YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 257 APTRAEVEDAMIGYIGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRV 314
Query: 297 -TIDNFQFFLNT 307
T D+ + T
Sbjct: 315 KTQDDARALFET 326
>gi|207743351|ref|YP_002259743.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum
IPO1609]
gi|206594748|emb|CAQ61675.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum
IPO1609]
Length = 327
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/312 (54%), Positives = 224/312 (71%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 62 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 122 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 182 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADTV 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL--- 296
PTR ++ + MI YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 240 APTRAEVEDAMIGYIGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRV 297
Query: 297 -TIDNFQFFLNT 307
T D+ + T
Sbjct: 298 KTQDDARALFET 309
>gi|300704326|ref|YP_003745929.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum CFBP2957]
gi|299071990|emb|CBJ43320.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum CFBP2957]
Length = 326
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 224/312 (71%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 61 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 121 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 181 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADTV 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL--- 296
PTR ++ + MI Y+ + + + RHMLGL + + G+ ++++LS L
Sbjct: 239 APTRAEVEDAMIGYVGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRV 296
Query: 297 -TIDNFQFFLNT 307
T D+ + T
Sbjct: 297 KTQDDARALFET 308
>gi|386333724|ref|YP_006029895.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum Po82]
gi|334196174|gb|AEG69359.1| tRNA-dihydrouridine synthase a [Ralstonia solanacearum Po82]
Length = 344
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/297 (55%), Positives = 218/297 (73%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 19 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 79 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 139 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++ ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 199 LKRDFPRLEILLNGGVQALEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYGA--DTV 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
PTR ++ + MI YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 257 APTRAEVEDAMIGYIGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKAL 311
>gi|421888439|ref|ZP_16319534.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum K60-1]
gi|378966249|emb|CCF96282.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum K60-1]
Length = 327
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 218/297 (73%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 62 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 122 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 182 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADTV 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
P R ++ + MI Y+ + + + RHMLGL + + G+ ++++LS L
Sbjct: 240 APARAEVEDAMIGYVGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKAL 294
>gi|421897245|ref|ZP_16327613.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum MolK2]
gi|206588451|emb|CAQ35414.1| trna-dihydrouridine synthase protein [Ralstonia solanacearum MolK2]
Length = 327
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 223/312 (71%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+ ++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRYFHRQISSHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V I +TV
Sbjct: 62 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADCVRAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 122 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+NFD YY
Sbjct: 182 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMANFDARYYG--ADTV 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL--- 296
PTR ++ + MI YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 240 APTRAEVEDAMIGYIGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRV 297
Query: 297 -TIDNFQFFLNT 307
T D+ + T
Sbjct: 298 KTQDDARALFET 309
>gi|237746180|ref|ZP_04576660.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
gi|229377531|gb|EEO27622.1| tRNA-dihydrouridine synthase A [Oxalobacter formigenes HOxBLS]
Length = 328
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/303 (55%), Positives = 227/303 (74%), Gaps = 5/303 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR I+R +WLYTEM TT A+L G+ LDF+ EEHP+A Q+G +EP +
Sbjct: 14 LDWTDRHCRYFHRLISRNTWLYTEMVTTGALLYGDVARHLDFSEEEHPVALQLGGSEPAE 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK+ +KWGYDEINLNCGCPS RVQ G FGA LM + LV+DC++AM+D+V ID+TV
Sbjct: 74 LAQCAKLGEKWGYDEINLNCGCPSERVQKGAFGACLMKESKLVADCVRAMKDAVSIDVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+++YDFVRDF+G ++ AGC+TFIVHARNA LK L+PK+NR+IP L+Y+ VY
Sbjct: 134 KHRIGIDDMHTYDFVRDFIGEIAGAGCQTFIVHARNAILKGLSPKENREIPPLRYDVVYQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP LEI++NGG++T +++ HL ++DGVM+GR AY P+ M+ FD +Y + +
Sbjct: 194 LKKDFPGLEILLNGGVETAGQVEEHLKHVDGVMIGRAAYHYPWRMAEFDARFYGDGTVPE 253
Query: 240 IPTRIDIINRMILYIRQQLN--NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P+ ++ MI YI +QL K ++ ITRHMLGL+ + G+ +F+QILS P L
Sbjct: 254 NPSA--VVAAMIPYIEKQLALYGEKGLRMHGITRHMLGLVTGMPGARRFRQILSDPARLA 311
Query: 298 IDN 300
N
Sbjct: 312 SGN 314
>gi|299067351|emb|CBJ38550.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum CMR15]
Length = 326
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 167/297 (56%), Positives = 218/297 (73%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDETEHPVALQLGGSEPDD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V I +TV
Sbjct: 61 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPRLVADGVKAMRDAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 121 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL +IDGVM+GREAY +P LM+ FD YY
Sbjct: 181 LKRDFPRLEILLNGGVQTLEQIDTHLAHIDGVMIGREAYHHPHLMAGFDARYYGA--DTV 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
PTR ++ + MI YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 239 APTRTEVEDAMIDYIGRWVARGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKAL 293
>gi|390572878|ref|ZP_10253071.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
gi|389935131|gb|EIM97066.1| YjbN family TIM-barrel protein [Burkholderia terrae BS001]
Length = 333
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 221/305 (72%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++WLYTEM TT A++ G+ + L F A+E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIHGDVERHLAFTADEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD+ Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDDVEDYAFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 198 LKRDFPQLEIIINGGIKTLDEVEAHLQHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y R +L +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEAEAKLIEYCRAELARGTYP--GAIVRHALGLYRGVAGARGWRRVLSDSKKLQAR 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLAIF 318
>gi|17546018|ref|NP_519420.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum GMI1000]
gi|17428313|emb|CAD15001.1| putative trna-dihydrouridine synthase protein [Ralstonia
solanacearum GMI1000]
Length = 344
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 168/312 (53%), Positives = 222/312 (71%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 19 MDWTDRHCRYFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEAEHPVALQLGGSEPDD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V I +TV
Sbjct: 79 LAQSARLGERWGYREINLNCGCPSERVQRGAFGACLMAEPKLVADGVKAMRDAVSIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVG ++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 139 KHRIGIDAIETYDFVRDFVGAIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY
Sbjct: 199 LKRDFPRLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMAGFDARYYGA--DAV 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL--- 296
PTR ++ + MI YI + + + RHMLGL + + G+ ++++LS L
Sbjct: 257 APTRAEVEDAMIDYIGRWVARGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRV 314
Query: 297 -TIDNFQFFLNT 307
T D+ + T
Sbjct: 315 KTPDDARALFET 326
>gi|420249934|ref|ZP_14753167.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
gi|398063231|gb|EJL54981.1| tRNA dihydrouridine synthase A [Burkholderia sp. BT03]
Length = 333
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 221/305 (72%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++WLYTEM TT A++ G+ + L F A+E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIHGDVERHLAFTADEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAMRDVVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD++ Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDDVDDYAFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 198 LKRDFPQLEIIINGGIKTLDEVEAHLQHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y R +L +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEAEAKLIEYCRAELARGTYP--GAIVRHALGLYRGVAGARGWRRVLSDSKKLQAR 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLAIF 318
>gi|404377933|ref|ZP_10983033.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
gi|348615864|gb|EGY65372.1| tRNA dihydrouridine synthase A [Ralstonia sp. 5_2_56FAA]
Length = 327
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 164/298 (55%), Positives = 219/298 (73%), Gaps = 5/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEFEHPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+ +KAMRD+V I +TV
Sbjct: 62 LAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLVAQGVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 122 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY +
Sbjct: 182 LKRDFPHLEILLNGGVQTLEQIDAHLAHVDGVMIGREAYHHPHLMAAFDARYYG--AGTE 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
PTR ++ + MI Y+ + + + RHMLGL + + G+ ++++LS L+
Sbjct: 240 APTRAEVEDAMIGYVGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDSKALS 295
>gi|309782238|ref|ZP_07676967.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
gi|308919009|gb|EFP64677.1| tRNA-dihydrouridine synthase A [Ralstonia sp. 5_7_47FAA]
Length = 346
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 164/298 (55%), Positives = 219/298 (73%), Gaps = 5/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 21 MDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEFEHPVALQLGGSEPDD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+ +KAMRD+V I +TV
Sbjct: 81 LAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLVAQGVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 141 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY +
Sbjct: 201 LKRDFPHLEILLNGGVQTLEQIDAHLAHVDGVMIGREAYHHPHLMAAFDARYYGA--GTE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
PTR ++ + MI Y+ + + + RHMLGL + + G+ ++++LS L+
Sbjct: 259 APTRAEVEDAMIGYVGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDSKALS 314
>gi|241662836|ref|YP_002981196.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12D]
gi|240864863|gb|ACS62524.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12D]
Length = 346
Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 164/298 (55%), Positives = 219/298 (73%), Gaps = 5/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 21 MDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEFEHPVALQLGGSEPDD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+ +KAMRD+V I +TV
Sbjct: 81 LAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLVAQGVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 141 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY +
Sbjct: 201 LKRDFPHLEILLNGGVQTLEQIDAHLAHVDGVMIGREAYHHPHLMAAFDARYYGA--GTE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
PTR ++ + MI Y+ + + + RHMLGL + + G+ ++++LS L+
Sbjct: 259 APTRAEVEDAMIGYVGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDSKALS 314
>gi|113868264|ref|YP_726753.1| tRNA-dihydrouridine synthase A [Ralstonia eutropha H16]
gi|113527040|emb|CAJ93385.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16]
Length = 345
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 215/292 (73%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCRMFHRQ++R++WLYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 22 MDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFDAAEHPVALQLGGSEPAD 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ Q+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V+I +TV
Sbjct: 82 LAMAAKLGQQWGYAEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMRDAVDIPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I YDFVRDFVG V+ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 142 KHRIGIDKIEHYDFVRDFVGRVAEAGCGTFIVHARNAILKGLSPKENREIPPLRYEVAYQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FPELEI+INGGI + E+ HL ++DGVM+GREAY P++++ D +Y +
Sbjct: 202 LKQEFPELEILINGGIVSYDEVAAHLEHVDGVMIGREAYHQPYVLAEMDARFYGDA-SAP 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P+R+D+ M YI + + ++TRHMLGL + I G ++++LS
Sbjct: 261 APSRLDVELAMQRYIGDLVERGGY--MGAVTRHMLGLHRGIAGGRGWRRVLS 310
>gi|186476399|ref|YP_001857869.1| YjbN family TIM-barrel protein [Burkholderia phymatum STM815]
gi|184192858|gb|ACC70823.1| TIM-barrel protein, yjbN family [Burkholderia phymatum STM815]
Length = 333
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 221/305 (72%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++WLYTEM TT A++ G+ L F A+E P+A Q+G +E +
Sbjct: 18 MDWTDRHCRSFHRTLSRHAWLYTEMVTTGALIHGDVARHLAFTADEAPVALQLGGSERED 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPELVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD+ Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDDVEDYAFVRDFVGTIADAGCDVFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NPF++++ D +Y +
Sbjct: 198 LKRDFPQLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPFVLADVDARFYGSTD--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y R +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEAEAQLIEYCRAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKKLAAR 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLAIF 318
>gi|194289932|ref|YP_002005839.1| tRNA-dihydrouridine synthase a [Cupriavidus taiwanensis LMG 19424]
gi|193223767|emb|CAQ69774.1| tRNA-dihydrouridine synthase A [Cupriavidus taiwanensis LMG 19424]
Length = 337
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 165/292 (56%), Positives = 214/292 (73%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCRMFHRQ++R++WLYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 14 MDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFDAAEHPVALQLGGSEPAD 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+VEI +TV
Sbjct: 74 LAMAAKLGQQWGYAEINLNCGCPSERVQRGAFGACLMAEPELVADCVKAMRDAVEIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I YDFVRDFVG V+ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 134 KHRIGIDKIEHYDFVRDFVGKVAQAGCGTFIVHARNAILKGLSPKENREIPPLRYEVAYQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FPELEI+INGGI + EI HL ++DGVM+GREAY P++++ D +Y +
Sbjct: 194 LKREFPELEILINGGILSHDEIARHLEHVDGVMIGREAYHQPYILAEMDARFYGDA-SAP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+P+R+ + M YI + + + TRHMLGL + I G ++++LS
Sbjct: 253 VPSRLAVELAMQRYIGDFVEQGGY--MGAATRHMLGLHRGIAGGRGWRRVLS 302
>gi|187928263|ref|YP_001898750.1| tRNA-dihydrouridine synthase A [Ralstonia pickettii 12J]
gi|187725153|gb|ACD26318.1| TIM-barrel protein, yjbN family [Ralstonia pickettii 12J]
Length = 327
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 163/297 (54%), Positives = 217/297 (73%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI+R++WLYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRFFHRQISRHTWLYTEMVTTGALLHGDVPRHLDFDEFEHPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ Q+WGY EINLNCGCPS RVQ G FGA LM +P LV+ + AMRD+V I +TV
Sbjct: 62 LAQAARLGQQWGYKEINLNCGCPSERVQRGAFGACLMAEPKLVAQGVTAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I +YDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y VY
Sbjct: 122 KHRIGIDAIETYDFVRDFVGTIAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI++NGG++T ++ID HL ++DGVM+GREAY +P LM+ FD YY +
Sbjct: 182 LKRDFPHLEILLNGGVQTLEQIDTHLAHVDGVMIGREAYHHPHLMAAFDARYYG--AGTE 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
PTR ++ + MI Y+ + + + RHMLGL + + G+ ++++LS L
Sbjct: 240 APTRAEVEDAMIGYVGRWVERGGYA--GAAVRHMLGLYRGVAGARGWRRVLSDSKAL 294
>gi|413962803|ref|ZP_11402030.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
gi|413928635|gb|EKS67923.1| tRNA-dihydrouridine synthase A [Burkholderia sp. SJ98]
Length = 334
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/306 (53%), Positives = 219/306 (71%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRLVSRHTWLYTEMVTTGALLYGDVARHLAFTPAEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAKSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y+FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY + Y
Sbjct: 138 KHRIGVDTVEEYEFVRDFVGTIADAGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI INGGIKT E++ HL ++DGVMLGREAY NP++++ D +Y +N P
Sbjct: 198 LKRDFPQLEISINGGIKTLDEVEEHLKHVDGVMLGREAYHNPYVLAGVDTRFYGANTP-- 255
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+P+R +I +I Y R +L + ++TRH LGL + + G+ ++++LS L
Sbjct: 256 -VPSREEIEAGLIDYARGELTRGTY--LGAVTRHALGLYRGVAGARGWRRVLSDNRRLAK 312
Query: 299 DNFQFF 304
N F
Sbjct: 313 GNLTIF 318
>gi|34496379|ref|NP_900594.1| tRNA-dihydrouridine synthase A [Chromobacterium violaceum ATCC
12472]
gi|34102232|gb|AAQ58598.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 347
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 164/297 (55%), Positives = 223/297 (75%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F RQITR++WLYTEM TT A+L G+ L F+ EHP+A Q+G +EP +
Sbjct: 34 LDWTDRHYRYFARQITRHTWLYTEMVTTGALLNGDVARHLRFDEAEHPVALQLGGSEPAE 93
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ Q+WGYDE+NLN GCPS RVQ G FGA LM +P LVSDC+KAMRD+V+ID+TV
Sbjct: 94 LATCAKLAQQWGYDEVNLNVGCPSERVQKGAFGACLMAEPQLVSDCVKAMRDAVDIDVTV 153
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I YD++R+FV TV+ AGCRTFIVHARNA LK L+PK+NR+IP LKY++VY
Sbjct: 154 KHRIGIDQIEHYDYLREFVDTVAEAGCRTFIVHARNAILKGLSPKENREIPPLKYDYVYR 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+LEI+INGG+KT EI HL ++DGVM+GREAY NP+LM+++D +Y + +
Sbjct: 214 LKRERPDLEILINGGVKTNAEIAEHLKHVDGVMVGREAYHNPWLMADWDALFYGD--ETA 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
P R+ ++ M+ Y+ +L + N+ I RH+LGL + + G+ ++++LS LL
Sbjct: 272 RPERVAVVEAMMPYVTARLGDG--SNVRHIARHILGLFQGLPGARNWRRMLSDAKLL 326
>gi|377820579|ref|YP_004976950.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
gi|357935414|gb|AET88973.1| tRNA-dihydrouridine synthase A [Burkholderia sp. YI23]
Length = 334
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 163/306 (53%), Positives = 217/306 (70%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRLVSRHAWLYTEMVTTGALLYGDVARHLAFTPAEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAKSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y+FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY + Y
Sbjct: 138 KHRIGVDTVEDYEFVRDFVGTIADAGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP LEI INGGIKT E++ HL ++DGVMLGREAY NP++++ D +Y ++ P
Sbjct: 198 LKRDFPHLEISINGGIKTLDEVEEHLKHVDGVMLGREAYHNPYVLAGVDTRFYGADTP-- 255
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+P+R I +I Y R +L + ++TRH LGL + + G+ ++++LS L
Sbjct: 256 -VPSREAIEAELIDYARHELARGTY--LGAVTRHALGLYRGVPGARGWRRVLSDSRRLAT 312
Query: 299 DNFQFF 304
+ F
Sbjct: 313 GDLGIF 318
>gi|83721523|ref|YP_443015.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|167620175|ref|ZP_02388806.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis Bt4]
gi|257139245|ref|ZP_05587507.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis E264]
gi|83655348|gb|ABC39411.1| dihydrouridine synthase [Burkholderia thailandensis E264]
Length = 339
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP +
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSARLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D I Y FVRDFVGTV+SAGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAIEDYAFVRDFVGTVASAGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGI T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQLEIVINGGITTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDARFYGA--TEP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREAVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDSKRLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|167582008|ref|ZP_02374882.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis TXDOH]
Length = 339
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP +
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSARLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D I Y FVRDFVGTV+SAGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAIEDYAFVRDFVGTVASAGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGI T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQLEIVINGGITTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDARFYGA--TEP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREAVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVTGARGWRRVLSDSKRLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|339326315|ref|YP_004686008.1| tRNA-dihydrouridine synthase A [Cupriavidus necator N-1]
gi|338166472|gb|AEI77527.1| tRNA-dihydrouridine synthase A [Cupriavidus necator N-1]
Length = 354
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 163/309 (52%), Positives = 218/309 (70%), Gaps = 4/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCRMFHRQ++R++WLYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 31 MDWTDRHCRMFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFDAAEHPVALQLGGSEPAD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ Q+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMR++V+I +TV
Sbjct: 91 LAMAAKLGQQWGYAEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMREAVDIPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I YDFVRDFVG V+ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 151 KHRIGIDKIEHYDFVRDFVGRVAEAGCGTFIVHARNAILKGLSPKENREIPPLRYEVAYQ 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP LEI+INGGI + E+ HL ++DGVM+GREAY P++++ D +Y +
Sbjct: 211 LKQEFPGLEILINGGIVSYDEMAAHLEHVDGVMIGREAYHQPYVLAEMDARFYGDA-SAP 269
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P+R+D+ M YI + + +TRHMLGL + I G ++++LS +
Sbjct: 270 TPSRLDVELAMQRYIGDLVERGGYMGV--VTRHMLGLHRGIAGGRGWRRVLSDAKRMNAA 327
Query: 300 NFQFFLNTL 308
+ +N L
Sbjct: 328 RTRADVNAL 336
>gi|330816761|ref|YP_004360466.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
gi|327369154|gb|AEA60510.1| Dihydrouridine synthase [Burkholderia gladioli BSR3]
Length = 345
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 163/298 (54%), Positives = 214/298 (71%), Gaps = 5/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F EE P+A Q+G +EP+
Sbjct: 21 MDWTDRHCRSLHRSISRHTWLYTEMVTTGALLHGDVARHLAFMPEEAPVALQLGGSEPED 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSA++ + WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAKSARLGENWGYDEINLNCGCPSERVQRGAFGACLMNEPALVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 141 KHRIGVDAVEDYAFVRDFVGTVAEAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGI T E++ HL ++DGVMLGREAY NPF+++ D +Y
Sbjct: 201 LKQDFPDLEILINGGITTLDEVETHLQHVDGVMLGREAYHNPFVLAEVDARFYGA--ARP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
PTR +I +R+I Y ++ + +I RH LGL + + G+ ++++LS L
Sbjct: 259 APTREEIEDRLIAYCIDEVARGNY--LGAIVRHALGLYRGVHGARGWRRVLSDSKRLA 314
>gi|295676394|ref|YP_003604918.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1002]
gi|295436237|gb|ADG15407.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1002]
Length = 333
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDVVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDTVEEYGFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT E+D HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 198 LKRDFPQLEIIINGGIKTLDEVDTHLQHVDGVMLGREAYHNPYVLADVDARFYGS--TQS 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 256 PPTRDQVEAKLIEYCATEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAAR 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLTIF 318
>gi|121600739|ref|YP_993040.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|251768090|ref|ZP_04820399.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
gi|121229549|gb|ABM52067.1| tRNA-dihydrouridine synthase A [Burkholderia mallei SAVP1]
gi|243060848|gb|EES43034.1| tRNA-dihydrouridine synthase A [Burkholderia mallei PRL-20]
Length = 436
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 115 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 174
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 175 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 234
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 235 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 294
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 295 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 352
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 353 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 410
Query: 300 NFQFF 304
+ F
Sbjct: 411 DLSIF 415
>gi|393778283|ref|ZP_10366562.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
gi|392714749|gb|EIZ02344.1| tRNA-dihydrouridine synthase A [Ralstonia sp. PBA]
Length = 362
Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 159/293 (54%), Positives = 216/293 (73%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHRQ++R++WLYTEM TT A+L G+ L F+A EHP+A Q+G +EP
Sbjct: 44 LDWTDRHCRYFHRQLSRHTWLYTEMVTTGALLHGDVARHLAFDAHEHPVALQLGGSEPAD 103
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+D ++AMRD+V I +TV
Sbjct: 104 LAAAAKLGEQWGYAEINLNCGCPSERVQRGAFGACLMAEPALVADGVRAMRDAVSIPVTV 163
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + Y FVRDFVGTV+ AGC FIVHARNA LK L+PK+NR+IP LKY Y
Sbjct: 164 KHRIGIDAVEEYAFVRDFVGTVAQAGCNVFIVHARNAILKGLSPKENREIPPLKYEVAYQ 223
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGI T + +D HL ++DGVM+GREAY NP+ ++ FD +Y
Sbjct: 224 LKRDFPDLEIVINGGIDTLEAMDAHLRHVDGVMIGREAYHNPYFLAAFDERFYGA--AEP 281
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+PTR + +RM+ Y+ + + + + ++TRHMLGL + + G+ +++ LS+
Sbjct: 282 LPTRETVEDRMLDYLARWVGSG--GHAAAVTRHMLGLYRGVGGARGWRRELSE 332
>gi|237812120|ref|YP_002896571.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
gi|237505677|gb|ACQ97995.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei MSHR346]
Length = 439
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 118 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 177
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 178 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 237
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 238 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 297
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 298 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 355
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 356 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 413
Query: 300 NFQFF 304
+ F
Sbjct: 414 DLSIF 418
>gi|242317073|ref|ZP_04816089.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
gi|242140312|gb|EES26714.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106b]
Length = 439
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 118 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 177
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 178 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 237
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 238 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 297
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 298 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 355
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 356 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 413
Query: 300 NFQFF 304
+ F
Sbjct: 414 DLSIF 418
>gi|217423368|ref|ZP_03454869.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
gi|217393226|gb|EEC33247.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 576]
Length = 439
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 118 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 177
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 178 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 237
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 238 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 297
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 298 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 355
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 356 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 413
Query: 300 NFQFF 304
+ F
Sbjct: 414 DLSIF 418
>gi|238563470|ref|ZP_00438839.2| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
gi|238520653|gb|EEP84111.1| tRNA-dihydrouridine synthase A [Burkholderia mallei GB8 horse 4]
Length = 439
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 118 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 177
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 178 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 237
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 238 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 297
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 298 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 355
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 356 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 413
Query: 300 NFQFF 304
+ F
Sbjct: 414 DLSIF 418
>gi|254179915|ref|ZP_04886514.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
gi|184210455|gb|EDU07498.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1655]
Length = 339
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL Y+DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRYVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|76809017|ref|YP_333391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710b]
gi|76578470|gb|ABA47945.1| dihydrouridine synthase [Burkholderia pseudomallei 1710b]
Length = 442
Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 121 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 180
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 181 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 240
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 241 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 300
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 301 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 358
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 359 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 416
Query: 300 NFQFF 304
+ F
Sbjct: 417 DLSIF 421
>gi|254177532|ref|ZP_04884187.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
gi|160698571|gb|EDP88541.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 10399]
Length = 339
Score = 359 bits (922), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 217/305 (71%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +YS
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYSA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|73541705|ref|YP_296225.1| tRNA-dihydrouridine synthase A [Ralstonia eutropha JMP134]
gi|72119118|gb|AAZ61381.1| tRNA-U16,U17-dihydrouridine synthase [Ralstonia eutropha JMP134]
Length = 341
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 159/298 (53%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQ++R++WLYTEM TT A+L G+ LDFNA EHP+A Q+G +EP
Sbjct: 14 MDWTDRHCRTFHRQLSRHTWLYTEMVTTGALLHGDVPRHLDFNAAEHPVALQLGGSEPAD 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +A++ Q+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 74 LAVAARLGQQWGYAEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMRDAVSIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 134 KHRIGIDKVEHYGFVRDFVGTVAQAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGI + E+ HL +DGVM+GREAY P++++ D +Y + +
Sbjct: 194 LKQDFPQLEILINGGIVSYDEMASHLENVDGVMIGREAYHQPYVLAEMDGRFYGDA-EAP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ +R+D+ M YI + + + ++TRHMLGL + + G ++++LS ++
Sbjct: 253 VRSRLDVELAMQRYIGELVERGGY--MGAVTRHMLGLYRGVAGGRGWRRVLSDAKRMS 308
>gi|167836742|ref|ZP_02463625.1| tRNA-dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 339
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHAAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D ++ Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDSVDDYAFVRDFVGTVAAAGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQLEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDARFYGA--TAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREAVEAKLVEYCATELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|254197994|ref|ZP_04904416.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
gi|169654735|gb|EDS87428.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei S13]
Length = 377
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 56 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 115
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 116 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 175
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 176 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 235
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 236 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 293
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 294 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 351
Query: 300 NFQFF 304
+ F
Sbjct: 352 DLSIF 356
>gi|134282264|ref|ZP_01768969.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
gi|134246302|gb|EBA46391.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 305]
Length = 379
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 58 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 117
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 118 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 177
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 178 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 237
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 238 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 295
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 296 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 353
Query: 300 NFQFF 304
+ F
Sbjct: 354 DLSIF 358
>gi|238027482|ref|YP_002911713.1| dihydrouridine synthase [Burkholderia glumae BGR1]
gi|237876676|gb|ACR29009.1| Dihydrouridine synthase [Burkholderia glumae BGR1]
Length = 336
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/298 (54%), Positives = 212/298 (71%), Gaps = 5/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 21 MDWTDRHCRSLHRTISRHTWLYTEMVTTGALMHGDVARHLAFTPDEAPVALQLGGSEPDD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAKSA++ + WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 81 LAKSARLGENWGYDEINLNCGCPSERVQRGAFGACLMNEPGLVADCVKAMRDAVSVPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 141 KHRIGVDAVEEYAFVRDFVGTVAQAGCDVFIVHARNAILKGLSPKENREIPPLKYDYAYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGI T E++ HL ++DGVMLGREAY NPF+++ D +Y
Sbjct: 201 LKQDFPDLEIIINGGITTLDEVEAHLQHVDGVMLGREAYHNPFVLAEVDRRFYGAAA--A 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
PTR +I R+I Y ++ + +I RH LGL + + G+ ++++LS L
Sbjct: 259 APTREEIEERLIAYCVAEIARGTY--LGAIVRHALGLYRGVHGARGWRRVLSDSKRLA 314
>gi|424904267|ref|ZP_18327777.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
gi|390930245|gb|EIP87647.1| tRNA dihydrouridine synthase A [Burkholderia thailandensis MSMB43]
Length = 323
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 2 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAHAAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D ++ Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDSVDDYAFVRDFVGTVAAAGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 182 LKRDFPQLEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGVDARFYGATA--P 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 APTREAVEAKLVEYCATELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLSIF 302
>gi|254258242|ref|ZP_04949296.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
gi|254216931|gb|EET06315.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1710a]
Length = 339
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|53719465|ref|YP_108451.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei K96243]
gi|126438522|ref|YP_001058864.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126452196|ref|YP_001066108.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
gi|167719732|ref|ZP_02402968.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei DM98]
gi|167738727|ref|ZP_02411501.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 14]
gi|167815950|ref|ZP_02447630.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 91]
gi|167911080|ref|ZP_02498171.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 112]
gi|52209879|emb|CAH35851.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|126218015|gb|ABN81521.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 668]
gi|126225838|gb|ABN89378.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1106a]
Length = 339
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|53723486|ref|YP_102906.1| tRNA-dihydrouridine synthase A [Burkholderia mallei ATCC 23344]
gi|124383650|ref|YP_001026373.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126449152|ref|YP_001080353.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|167894436|ref|ZP_02481838.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 7894]
gi|254199845|ref|ZP_04906211.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|254206173|ref|ZP_04912525.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|254358573|ref|ZP_04974846.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
gi|52426909|gb|AAU47502.1| dihydrouridine synthase [Burkholderia mallei ATCC 23344]
gi|124291670|gb|ABN00939.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10229]
gi|126242022|gb|ABO05115.1| tRNA-dihydrouridine synthase A [Burkholderia mallei NCTC 10247]
gi|147749441|gb|EDK56515.1| tRNA-dihydrouridine synthase A [Burkholderia mallei FMH]
gi|147753616|gb|EDK60681.1| tRNA-dihydrouridine synthase A [Burkholderia mallei JHU]
gi|148027700|gb|EDK85721.1| tRNA-dihydrouridine synthase A [Burkholderia mallei 2002721280]
Length = 339
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|307729510|ref|YP_003906734.1| yjbN family TIM-barrel protein [Burkholderia sp. CCGE1003]
gi|307584045|gb|ADN57443.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1003]
Length = 333
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 218/306 (71%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVGVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYSFVRDFVGTIAEAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGIKT E++ HL ++DGVMLGREAY NP+L+++ D +Y + +
Sbjct: 198 LKRDFPQLEIVINGGIKTLDEVEAHLQHVDGVMLGREAYHNPYLLADVDARFYGSA---E 254
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 255 APLTREQVEAKLIEYCGVEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 312
Query: 299 DNFQFF 304
+ F
Sbjct: 313 RDLAIF 318
>gi|329905074|ref|ZP_08274002.1| tRNA-dihydrouridine synthase A [Oxalobacteraceae bacterium
IMCC9480]
gi|327547746|gb|EGF32522.1| tRNA-dihydrouridine synthase A [Oxalobacteraceae bacterium
IMCC9480]
Length = 295
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/292 (56%), Positives = 211/292 (72%), Gaps = 9/292 (3%)
Query: 25 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 83
M TT A++ G+ LDFN EEHP+A Q+G ++P LA SA++ Q+WGYDEINLNCGCPS
Sbjct: 1 MVTTGALVHGDVARHLDFNDEEHPVALQLGGSDPADLAHSARLGQQWGYDEINLNCGCPS 60
Query: 84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 143
RVQ G FGA LM +P LV+DC+KAMRD+V ID+TVKHRIGID SY F+RDFVGTV+
Sbjct: 61 ERVQKGAFGACLMAEPQLVADCVKAMRDAVSIDVTVKHRIGIDKNESYAFMRDFVGTVAE 120
Query: 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203
AGC TFIVHARNA LK L+PK+NR++P L+Y+ VY LK++FP+LEIIINGGIKT+ EIDL
Sbjct: 121 AGCTTFIVHARNAILKGLSPKENREVPPLRYDAVYQLKREFPDLEIIINGGIKTEAEIDL 180
Query: 204 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKI 263
HL ++DGVMLGREAY NP+LM+ FD YY + + TR +++ M+ YIR QL
Sbjct: 181 HLQHVDGVMLGREAYHNPYLMAGFDARYYDDPATPR--TRTEVLEAMLPYIRSQLGPTPS 238
Query: 264 ------KNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN 309
+NSITRHMLGLM + G+ F+Q LS+ L I + + +
Sbjct: 239 IPLKAGPRLNSITRHMLGLMAGLPGARHFRQTLSESKRLAIGDAGLLMEAME 290
>gi|167902837|ref|ZP_02490042.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei NCTC
13177]
Length = 339
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVATAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|226196332|ref|ZP_03791914.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|254297746|ref|ZP_04965199.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|386861884|ref|YP_006274833.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403518544|ref|YP_006652677.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
gi|418387439|ref|ZP_12967302.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|418534028|ref|ZP_13099879.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|418553491|ref|ZP_13118314.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|157807557|gb|EDO84727.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 406e]
gi|225931549|gb|EEH27554.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei Pakistan
9]
gi|385360277|gb|EIF66216.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026a]
gi|385371644|gb|EIF76811.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354e]
gi|385376345|gb|EIF81036.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 354a]
gi|385659012|gb|AFI66435.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1026b]
gi|403074186|gb|AFR15766.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BPC006]
Length = 323
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 2 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 182 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYG--ASAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLSIF 302
>gi|418541069|ref|ZP_13106570.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|418547309|ref|ZP_13112472.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
gi|385359224|gb|EIF65198.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258a]
gi|385361779|gb|EIF67653.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 1258b]
Length = 323
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 2 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 182 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLSIF 302
>gi|134295639|ref|YP_001119374.1| tRNA-dihydrouridine synthase A [Burkholderia vietnamiensis G4]
gi|134138796|gb|ABO54539.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia vietnamiensis
G4]
Length = 344
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 161/305 (52%), Positives = 215/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +EP
Sbjct: 18 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAQAGCDTFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 198 LKRDFPALEIVINGGIKTLDEVAEHLEHVDGVMLGREAYHNPYVLAGVDARFYGS--TAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEAEAKLIEYCAAELKRGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKKLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSVF 318
>gi|421480048|ref|ZP_15927700.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
gi|400221841|gb|EJO52267.1| tRNA dihydrouridine synthase A [Burkholderia multivorans CF2]
Length = 328
Score = 357 bits (915), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 164/316 (51%), Positives = 220/316 (69%), Gaps = 11/316 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 2 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAQAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 182 LKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
PTR + R+I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 240 APTREEAEARLIEYCAAELKRGTY--LGAIVRHALGLYRGVPGARGWRRVLSDNKKLARG 297
Query: 294 NLLTIDNFQFFLNTLN 309
+L D + LN +
Sbjct: 298 DLAVFDEARAHLNDVE 313
>gi|161524837|ref|YP_001579849.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|160342266|gb|ABX15352.1| TIM-barrel protein, yjbN family [Burkholderia multivorans ATCC
17616]
Length = 357
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 220/316 (69%), Gaps = 11/316 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 31 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPDD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 91 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 151 KHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAYR 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 211 LKREFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
PTR + R+I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 269 APTREEAEARLIEYCAAELKRGTY--LGAIVRHALGLYRGVPGARGWRRVLSDNKKLARG 326
Query: 294 NLLTIDNFQFFLNTLN 309
+L D + LN +
Sbjct: 327 DLAVFDEARAHLNDVE 342
>gi|323526215|ref|YP_004228368.1| hypothetical protein BC1001_1876 [Burkholderia sp. CCGE1001]
gi|323383217|gb|ADX55308.1| TIM-barrel protein, yjbN family [Burkholderia sp. CCGE1001]
Length = 333
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 217/306 (70%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPHD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDVVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYSFVRDFVGTIAQAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGIKT E++ HL ++DGVMLGREAY NP+L+++ D +Y + +
Sbjct: 198 LKRDFPQLEIVINGGIKTLDEVETHLQHVDGVMLGREAYHNPYLLADVDARFYGS---SE 254
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + +++ Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 255 APLTREQVEAKLVEYCAAEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 312
Query: 299 DNFQFF 304
+ F
Sbjct: 313 RDLAIF 318
>gi|167919102|ref|ZP_02506193.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei BCC215]
Length = 339
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 215/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYGA--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREQVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|221197852|ref|ZP_03570898.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
gi|221204590|ref|ZP_03577607.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221175447|gb|EEE07877.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2]
gi|221181784|gb|EEE14185.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD2M]
Length = 357
Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/316 (51%), Positives = 219/316 (69%), Gaps = 11/316 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 31 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPDD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 91 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 151 KHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAYR 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 211 LKHDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
PTR + R+I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 269 APTREEAEARLIEYCAAELKRGTY--LGAIVRHALGLYRGVPGARGWRRVLSDNKKLGRG 326
Query: 294 NLLTIDNFQFFLNTLN 309
+L D + LN +
Sbjct: 327 DLAVFDEARAHLNDVE 342
>gi|402566633|ref|YP_006615978.1| yjbN family TIM-barrel protein [Burkholderia cepacia GG4]
gi|402247830|gb|AFQ48284.1| TIM-barrel protein, yjbN family [Burkholderia cepacia GG4]
Length = 328
Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +EP
Sbjct: 2 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGATAE-- 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y +L + +I RH LGL + G+ ++++LS L
Sbjct: 240 APTREEAEAQLIEYCAAELKRGTY--LGAIVRHALGLYRGAPGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|189350413|ref|YP_001946041.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
gi|189334435|dbj|BAG43505.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans ATCC
17616]
Length = 344
Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 220/316 (69%), Gaps = 11/316 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 18 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 198 LKREFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
PTR + R+I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 256 APTREEAEARLIEYCAAELKRGTY--LGAIVRHALGLYRGVPGARGWRRVLSDNKKLARG 313
Query: 294 NLLTIDNFQFFLNTLN 309
+L D + LN +
Sbjct: 314 DLAVFDEARAHLNDVE 329
>gi|387902163|ref|YP_006332502.1| trNA dihydrouridine synthase A [Burkholderia sp. KJ006]
gi|387577055|gb|AFJ85771.1| tRNA dihydrouridine synthase A [Burkholderia sp. KJ006]
Length = 328
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 161/305 (52%), Positives = 215/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +EP
Sbjct: 2 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAQAGCDTFIVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPALEIVINGGIKTLDEVAEHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA--P 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 APTREEAEAKLIEYCAAELKRGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLSVF 302
>gi|407713533|ref|YP_006834098.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
gi|407235717|gb|AFT85916.1| tRNA-dihydrouridine synthase A [Burkholderia phenoliruptrix
BR3459a]
Length = 316
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 159/306 (51%), Positives = 218/306 (71%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 1 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPDD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 61 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGVDAVEDYSFVRDFVGTIAQAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEI+INGGIKT E++ HL ++DGVMLGREAY +P+L+++ D +Y + +
Sbjct: 181 LKRDFPQLEIVINGGIKTLDEVETHLQHVDGVMLGREAYHHPYLLADVDARFYGS---SE 237
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + +++ Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 238 APLTREQVEAKLVEYCAAEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 295
Query: 299 DNFQFF 304
+ F
Sbjct: 296 RDLAIF 301
>gi|187923745|ref|YP_001895387.1| tRNA-dihydrouridine synthase A [Burkholderia phytofirmans PsJN]
gi|187714939|gb|ACD16163.1| TIM-barrel protein, yjbN family [Burkholderia phytofirmans PsJN]
Length = 333
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 216/306 (70%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F EE P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRVISRHTWLYTEMVTTGALLHGDVPRHLAFTPEEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY + Y
Sbjct: 138 KHRIGVDAVEEYGFVRDFVGTIAEAGCNVFIVHARNAILKGLSPKENREIPPLKYEYAYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT E++ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 198 LKRDFPQLEIIINGGIKTLDEVEAHLEHVDGVMLGREAYHNPYVLADVDARFYGAA---Q 254
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 255 TPLTREQVEAKLIEYCAAEMVRGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 312
Query: 299 DNFQFF 304
+ F
Sbjct: 313 RDLTIF 318
>gi|167824321|ref|ZP_02455792.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei 9]
Length = 334
Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 2 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 182 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYG--ASAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLSIF 302
>gi|167845866|ref|ZP_02471374.1| tRNA-dihydrouridine synthase A [Burkholderia pseudomallei B7210]
Length = 333
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 216/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F +E P+A Q+G +EP
Sbjct: 1 MDWTDRHCRSFHRTISRHAWLYTEMVTTGALIHGDVARHLAFTPDEAPVALQLGGSEPAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TV
Sbjct: 61 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 121 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFVVHARNAILKGLSPKENREIPPLKYDYAYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI+INGG+ T E++ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 181 LKRDFPQIEIVINGGVTTLDEVEQHLRHVDGVMLGREAYHNPYVLAGIDARFYG--ASAP 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR ++ +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 239 APTREEVEAKLVEYCAAELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDNKRLGRG 296
Query: 300 NFQFF 304
+ F
Sbjct: 297 DLSIF 301
>gi|221213021|ref|ZP_03585997.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
gi|221167234|gb|EED99704.1| tRNA-dihydrouridine synthase A [Burkholderia multivorans CGD1]
Length = 357
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 219/316 (69%), Gaps = 11/316 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 31 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPDD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 91 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 151 KHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAYR 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 211 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
PTR + R+I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 269 APTREEAEARLIEYCAAELKRGTY--LGAIVRHALGLYRGVPGARGWRRVLSDNKKLGRG 326
Query: 294 NLLTIDNFQFFLNTLN 309
+L D + LN +
Sbjct: 327 DLAVFDEARAHLNDVE 342
>gi|421472742|ref|ZP_15920917.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
gi|400222506|gb|EJO52881.1| tRNA dihydrouridine synthase A [Burkholderia multivorans ATCC
BAA-247]
Length = 328
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/316 (51%), Positives = 219/316 (69%), Gaps = 11/316 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 2 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVARHLAFTPNESPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAEAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP+++++ D +Y +
Sbjct: 182 LKHDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLADVDARFYGSTD--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
PTR + R+I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 240 APTREEAEARLIEYCAAELKRGTY--LGAIVRHALGLYRGVPGARGWRRVLSDNKKLGRG 297
Query: 294 NLLTIDNFQFFLNTLN 309
+L D + LN +
Sbjct: 298 DLAVFDEARAHLNDVE 313
>gi|167586199|ref|ZP_02378587.1| tRNA-dihydrouridine synthase A [Burkholderia ubonensis Bu]
Length = 339
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 213/305 (69%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR++WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 18 LDWTDRHCRSFHRTLTRHTWLYTEMITTGALLFGDAQRHLAFTPSESPVALQLGGSERDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC F+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEEYAFVRDFVGTVAEAGCEVFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 198 LKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGA--NDA 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + R+I Y +L + ++ RH LGL + + G+ ++++LS L
Sbjct: 256 APTREEAEERLIEYCAAELKRGTY--LGAVVRHALGLYRGVAGARGWRRVLSDNKKLAHG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLAVF 318
>gi|167566497|ref|ZP_02359413.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis EO147]
gi|167570050|ref|ZP_02362924.1| tRNA-dihydrouridine synthase A [Burkholderia oklahomensis C6786]
Length = 339
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR I+R++WLYTEM TT A++ G+ L F E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSFHRTISRHTWLYTEMVTTGALVHGDVARHLAFTPGEAPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V I +TV
Sbjct: 78 LAHSAKLGERWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMCDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV++AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAAAGCDVFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEII+NGGI T E++ HL ++DGVMLGREAY NP+++++ D +Y
Sbjct: 198 LKQDFPQLEIIVNGGITTLDEVERHLQHVDGVMLGREAYHNPYVLADVDARFYGA--ATP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + +++ Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 APTREAVEAQLVEYCATELARGTY--LGAIVRHALGLYRGVAGARGWRRVLSDSKRLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|209520920|ref|ZP_03269659.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
gi|209498644|gb|EDZ98760.1| TIM-barrel protein, yjbN family [Burkholderia sp. H160]
Length = 317
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 216/306 (70%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F EE P+A Q+G +EP
Sbjct: 2 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPEEAPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGYDEINLNCGCPS RV+ G FGA LM +P LV+DC+KAMRD V + +TV
Sbjct: 62 LARSARLGEQWGYDEINLNCGCPSERVRRGAFGACLMNEPQLVADCVKAMRDVVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDTVEEYGFVRDFVGTIAQAGCEVFIVHARNAILKGLSPKENREIPPLKYDYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEIIINGGIKT E+D HL ++DGVMLGREAY NP++++ D +Y + +
Sbjct: 182 LKRDFPQLEIIINGGIKTLDEVDTHLQHVDGVMLGREAYHNPYVLAEVDSRFYGST---Q 238
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 239 APLTREQVEAKLIEYCATEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 296
Query: 299 DNFQFF 304
+ F
Sbjct: 297 RDLTIF 302
>gi|421865213|ref|ZP_16296893.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
gi|358074676|emb|CCE47771.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia H111]
Length = 328
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 215/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E PIA Q+G +E
Sbjct: 2 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPIALQLGGSERDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + + +I RH LGL + + G+ ++++LS L
Sbjct: 240 VPTREEAEAQLIAYCAAELKRDTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|124267105|ref|YP_001021109.1| tRNA-dihydrouridine synthase A [Methylibium petroleiphilum PM1]
gi|124259880|gb|ABM94874.1| tRNA-dihydrouridine synthase A [Methylibium petroleiphilum PM1]
Length = 352
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 159/296 (53%), Positives = 218/296 (73%), Gaps = 5/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A+L G+ LDF EEHP+A Q+G +EP+
Sbjct: 36 MDWTDRHCRHFHRLLSRHTRLYTEMVTTGALLHGDVPRHLDFGPEEHPVALQLGGSEPED 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V I +TV
Sbjct: 96 LAACAKLGERWGYDEINLNCGCPSERVQRGAFGACLMAEPDLVADGVKAMRDAVGIPVTV 155
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY FVRDF+GTV++AGC FIVHARNA+LK L+PK+NR++P L++ +VY
Sbjct: 156 KHRIGIDRTESYGFVRDFIGTVAAAGCEVFIVHARNAWLKGLSPKENRELPPLRHEWVYR 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I++NGG+KT EI HL +DGVMLGREAY +P+LM+++D+ ++ + P +
Sbjct: 216 LKRDFPALTIVLNGGVKTHDEIATHLAQVDGVMLGREAYHHPWLMADWDVRFFGDAPLER 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
R DI M+ Y+ +L + + + ++RHMLGL + G+ +++Q+ S L
Sbjct: 276 --DRADIEAAMVRYM--ELQRLQGEPWSRVSRHMLGLWSGMSGARRWRQVWSDHRL 327
>gi|444358841|ref|ZP_21160214.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
gi|443603248|gb|ELT71271.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia BC7]
Length = 344
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E PIA Q+G +E
Sbjct: 18 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPIALQLGGSERDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 198 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 VPTREEAEAQLIAYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLAVF 318
>gi|206559989|ref|YP_002230753.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
gi|198036030|emb|CAR51923.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia J2315]
Length = 353
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E PIA Q+G +E
Sbjct: 27 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPIALQLGGSERDD 86
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 87 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 146
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 147 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 206
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 207 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGS--TAA 264
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 265 VPTREEAEAQLIAYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 322
Query: 300 NFQFF 304
+ F
Sbjct: 323 DLAVF 327
>gi|444365932|ref|ZP_21166033.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
gi|443605311|gb|ELT73169.1| tRNA dihydrouridine synthase A [Burkholderia cenocepacia
K56-2Valvano]
Length = 328
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E PIA Q+G +E
Sbjct: 2 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPIALQLGGSERDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVAVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 VPTREEAEAQLIAYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|170692264|ref|ZP_02883427.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
gi|170142694|gb|EDT10859.1| TIM-barrel protein, yjbN family [Burkholderia graminis C4D1M]
Length = 317
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 215/306 (70%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F +E P+A Q+G +EP
Sbjct: 2 MDWTDRHCRSLHRMISRHTWLYTEMVTTGALLHGDVPRHLAFTPDEAPVALQLGGSEPDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V + +TV
Sbjct: 62 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDVVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY + Y
Sbjct: 122 KHRIGVDAVEEYGFVRDFVGTIAEAGCDVFIVHARNAILKGLSPKENREIPPLKYEYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEIIINGGI+T E++ HL ++DGVMLGREAY NP+L+++ D +Y + +
Sbjct: 182 LKRDFPHLEIIINGGIRTLDEVETHLQHVDGVMLGREAYHNPYLLADVDARFYGST---Q 238
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 239 APLTREQVEAQLIEYCAAEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 296
Query: 299 DNFQFF 304
+ F
Sbjct: 297 RDLAIF 302
>gi|78066180|ref|YP_368949.1| tRNA-dihydrouridine synthase A [Burkholderia sp. 383]
gi|77966925|gb|ABB08305.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia sp. 383]
Length = 344
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 160/313 (51%), Positives = 218/313 (69%), Gaps = 11/313 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 18 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSERDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPSLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 198 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGS--TEA 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS +
Sbjct: 256 VPTREEAEAKLIEYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARA 313
Query: 294 NLLTIDNFQFFLN 306
+L D + LN
Sbjct: 314 DLAVFDEARAHLN 326
>gi|115351522|ref|YP_773361.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria AMMD]
gi|115281510|gb|ABI87027.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia ambifaria AMMD]
Length = 344
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 18 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSERDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVG V+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEDYAFVRDFVGKVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 198 LKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 256 VPTREEAEAKLIEYCAAELKRGTY--LGAIVRHALGLYRGVGGARGWRRVLSDNKRLARG 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLAVF 318
>gi|91783334|ref|YP_558540.1| tRNA-dihydrouridine synthase A [Burkholderia xenovorans LB400]
gi|91687288|gb|ABE30488.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia xenovorans
LB400]
Length = 333
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 214/306 (69%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRVISRHTWLYTEMVTTGALLHGDVPRHLAFTPVEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEEYGFVRDFVGTIADAGCNVFIVHARNAILKGLSPKENREIPPLKYDYAYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEIIINGGIKT E++ HL ++DGVMLGREAY NP+L++ D +Y +
Sbjct: 198 LKRDFPHLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPYLLAGVDARFYGSA---D 254
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P TR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 255 TPLTREQVEAKLIDYCAAEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAA 312
Query: 299 DNFQFF 304
+ F
Sbjct: 313 RDLSIF 318
>gi|170698688|ref|ZP_02889754.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
gi|170136392|gb|EDT04654.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria IOP40-10]
Length = 328
Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 2 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSERDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVG V+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGKVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 VPTREEAEAKLIEYCAAELKRGAY--LGAIVRHALGLYRGVGGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|171317498|ref|ZP_02906688.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|172060541|ref|YP_001808193.1| tRNA-dihydrouridine synthase A [Burkholderia ambifaria MC40-6]
gi|171097327|gb|EDT42172.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MEX-5]
gi|171993058|gb|ACB63977.1| TIM-barrel protein, yjbN family [Burkholderia ambifaria MC40-6]
Length = 328
Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 2 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFTPNESPVALQLGGSERDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVG V+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGKVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGIKT E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPSLEIVINGGIKTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTA--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 VPTREEAEAKLIEYCAAELKRGTY--LGAIVRHALGLYRGVGGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|224824837|ref|ZP_03697944.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
gi|224603330|gb|EEG09506.1| TIM-barrel protein, yjbN family [Pseudogulbenkiania ferrooxidans
2002]
Length = 313
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 157/297 (52%), Positives = 220/297 (74%), Gaps = 4/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F RQITR++WLYTEM TT A+L G+ L ++ EHP+A Q+G +EP +
Sbjct: 2 LDWTDRHYRFFARQITRHTWLYTEMVTTGALLYGDVARHLRYHECEHPVALQLGGSEPDE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ ++WGYDE+NLN GCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 62 LARCARLAEEWGYDEVNLNVGCPSERVQKGAFGACLMAEPQLVADCVKAMRDAVGIDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + Y +VRDFVG + AGC TFIVHARNA LK L+PK+NR+IP LKY++VY
Sbjct: 122 KHRIGIDAVEDYGYVRDFVGHIVEAGCATFIVHARNAILKGLSPKENREIPPLKYDYVYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI++NGG+K+ EI HL ++DGVM+GREAY NP+LM+++D +Y + +
Sbjct: 182 LKRDFPDVEILLNGGVKSNDEIARHLQHVDGVMVGREAYHNPWLMADWDARFYDD--AHT 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
TR ++ M+ YI Q+L + + + RH+LGL + + G+ ++++LS LL
Sbjct: 240 EATRDAVVEAMLPYIEQRLAEPATQ-LRHVARHILGLYQGLPGARAWRRMLSDAALL 295
>gi|254245521|ref|ZP_04938842.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
gi|124870297|gb|EAY62013.1| tRNA-dihydrouridine synthase [Burkholderia cenocepacia PC184]
Length = 359
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 213/305 (69%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 33 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPVALQLGGSERDD 92
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V + +TV
Sbjct: 93 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVRAMRDAVSVPVTV 152
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 153 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y
Sbjct: 213 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGA--TAA 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 271 VPTREEAEAQLIAYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 328
Query: 300 NFQFF 304
+ F
Sbjct: 329 DLAVF 333
>gi|385209824|ref|ZP_10036692.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
gi|385182162|gb|EIF31438.1| tRNA dihydrouridine synthase A [Burkholderia sp. Ch1-1]
Length = 333
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 213/305 (69%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR I+R++WLYTEM TT A+L G+ L F E P+A Q+G +EP
Sbjct: 18 MDWTDRHCRSLHRVISRHTWLYTEMVTTGALLHGDVPRHLAFTPAEAPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAVEEYGFVRDFVGTIADAGCNVFIVHARNAILKGLSPKENREIPPLKYDYAYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEIIINGGIKT E++ HL ++DGVMLGREAY NP+ +++ D +Y +
Sbjct: 198 LKRDFPHLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPYRLADVDARFYGSTDSPL 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
TR + ++I Y ++ + +ITRH LGL + G+ ++++LS L
Sbjct: 258 --TREQVEAKLIDYCAAEMARGTY--LGAITRHALGLYRGEAGARGWRRVLSDSKRLAAR 313
Query: 300 NFQFF 304
+ F
Sbjct: 314 DLSIF 318
>gi|170732894|ref|YP_001764841.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia MC0-3]
gi|169816136|gb|ACA90719.1| TIM-barrel protein, yjbN family [Burkholderia cenocepacia MC0-3]
Length = 328
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 213/305 (69%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 2 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPVALQLGGSERDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVRAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKHDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGSTA--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 VPTREEAEAQLIEYCAGELKRGTC--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|107022641|ref|YP_620968.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia AU 1054]
gi|116689590|ref|YP_835213.1| tRNA-dihydrouridine synthase A [Burkholderia cenocepacia HI2424]
gi|105892830|gb|ABF75995.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia AU
1054]
gi|116647679|gb|ABK08320.1| tRNA-U16,U17-dihydrouridine synthase [Burkholderia cenocepacia
HI2424]
Length = 365
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 156/305 (51%), Positives = 213/305 (69%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +E
Sbjct: 39 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDAQRHLAFTPSESPVALQLGGSERDD 98
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD+V + +TV
Sbjct: 99 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVRAMRDAVSVPVTV 158
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 159 KHRIGVDAVEDYAFVRDFVGTVAEAGCETFVVHARNAILKGLSPKENREIPPLKYDYAYR 218
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 219 LKRDFPSLEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAEVDARFYGS--TAA 276
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 277 VPMREEAEAQLIEYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 334
Query: 300 NFQFF 304
+ F
Sbjct: 335 DLAVF 339
>gi|226940607|ref|YP_002795681.1| tRNA-dihydrouridine synthase A [Laribacter hongkongensis HLHK9]
gi|226715534|gb|ACO74672.1| Dihydrouridine synthase [Laribacter hongkongensis HLHK9]
Length = 339
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 154/310 (49%), Positives = 220/310 (70%), Gaps = 5/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F R ++R++WLYTEM TT A++ G+ L F+ EHPIA Q+G +EP +
Sbjct: 27 LDWTDRHYRYFARLLSRHTWLYTEMVTTGALIHGDVPRHLTFHETEHPIALQLGGSEPAE 86
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ + WGYDE+NLN GCPS RVQ G FGA LM +P LV+DC++AMRD + +TV
Sbjct: 87 LAQCARLAESWGYDEVNLNVGCPSERVQKGAFGACLMKEPGLVADCVRAMRDVTTLPVTV 146
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD+ ++ FV DFVG V++AGC TFIVHARNA LK L+PK+NR+IP LKY++ +
Sbjct: 147 KHRIGVDDVEAFGFVSDFVGEVAAAGCSTFIVHARNAILKGLSPKENREIPPLKYDYAWR 206
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP+LEI++NGGI+T E L ++DGVM+GREAY NP+L++ D +Y + ++
Sbjct: 207 LKAEFPDLEILVNGGIRTLDEAAEQLGHVDGVMIGREAYHNPYLLAGVDARFYGD--EHP 264
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PTR ++I R+I Y+ L + I RH+LGL+ + G+ +F+Q+LS LL
Sbjct: 265 VPTRAEVIERLIPYVDAHLAAG--GKVRDIARHVLGLVNGVPGARRFRQMLSDSRLLKDA 322
Query: 300 NFQFFLNTLN 309
+ + FL L
Sbjct: 323 DSRLFLTALT 332
>gi|416934020|ref|ZP_11933791.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
gi|325525397|gb|EGD03227.1| tRNA-dihydrouridine synthase A [Burkholderia sp. TJI49]
Length = 328
Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 214/305 (70%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F+ E P+A Q+G +E
Sbjct: 2 LDWTDRHCRSFHRTLTRDTWLYTEMITTGALLFGDAQRHLAFSPNESPVALQLGGSERDD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V + +TV
Sbjct: 62 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMNDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D + Y FVRDFVGTV+ AGC TF+VHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 122 KHRIGVDAVEDYAFVRDFVGTVAEAGCATFVVHARNAILKGLSPKENREIPPLKYDYAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI+INGGI T E+ HL ++DGVMLGREAY NP++++ D +Y +
Sbjct: 182 LKRDFPELEIVINGGITTLDEVAQHLEHVDGVMLGREAYHNPYVLAGVDARFYGSTD--A 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
PTR + ++I Y +L + +I RH LGL + + G+ ++++LS L
Sbjct: 240 APTREEAEAKLIEYCAAELKRGTY--LGAIVRHALGLYRGMPGARGWRRVLSDNKKLARG 297
Query: 300 NFQFF 304
+ F
Sbjct: 298 DLAVF 302
>gi|347538423|ref|YP_004845847.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345641600|dbj|BAK75433.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 316
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 155/297 (52%), Positives = 220/297 (74%), Gaps = 4/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F RQITR++WLYTEM TT A+L G+ L ++ EHP+A Q+G +EP +
Sbjct: 5 LDWTDRHYRFFARQITRHTWLYTEMVTTGALLYGDVARHLRYHECEHPVALQLGGSEPDE 64
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ ++WGYDE+NLN GCPS RVQ G FGA LM +P LV+DC+K+MRD+V ID+TV
Sbjct: 65 LARCARLAEEWGYDEVNLNVGCPSERVQKGAFGACLMAEPQLVADCVKSMRDAVGIDVTV 124
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + Y +VRDFVG + AGC TFIVHARNA LK L+PK+NR+IP LKY++VY
Sbjct: 125 KHRIGIDAVEDYGYVRDFVGHIVEAGCATFIVHARNAILKGLSPKENREIPPLKYDYVYR 184
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP++EI++NGG+K+ EI HL ++DGVM+GREAY NP+LM+++D +Y + +
Sbjct: 185 LKRDFPDVEILLNGGVKSNDEIAGHLQHVDGVMVGREAYHNPWLMADWDARFYDD--AHT 242
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+R ++ M+ YI Q+L + + + RH+LGL + + G+ ++++LS LL
Sbjct: 243 EASRDAVVEVMLPYIEQRLAEPGTQ-LRHVARHILGLYQGLPGARAWRRMLSDAALL 298
>gi|374371010|ref|ZP_09628998.1| tRNA-dihydrouridine synthase A [Cupriavidus basilensis OR16]
gi|373097456|gb|EHP38589.1| tRNA-dihydrouridine synthase A [Cupriavidus basilensis OR16]
Length = 312
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 206/283 (72%), Gaps = 5/283 (1%)
Query: 10 MFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ 68
MFHRQ++R++WLYTEM TT A+L G+ L F+A E P+A Q+G +EP LA +AK+ +
Sbjct: 1 MFHRQLSRHTWLYTEMVTTGALLHGDVARHLAFDASEQPVALQLGGSEPADLAAAAKLGE 60
Query: 69 KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 128
+WGY E+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIGID I
Sbjct: 61 QWGYVEVNLNCGCPSERVQRGAFGACLMAEPELVADCVKAMRDAVSIPVTVKHRIGIDTI 120
Query: 129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE 188
YDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP L+Y Y LK++FP LE
Sbjct: 121 EHYDFVRDFVGTVAEAGCETFIVHARNAILKGLSPKENREIPPLRYEVAYQLKQEFPHLE 180
Query: 189 IIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIIN 248
I+INGGI T E+D HL ++DGVM+GREAY P++++ D +Y Q +P+R D+
Sbjct: 181 ILINGGIVTHDEMDEHLAHVDGVMIGREAYHQPYVLAGMDGRFYGA--QTPVPSRRDVEL 238
Query: 249 RMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
M YI + K + ++TRHMLGL + I G ++++LS
Sbjct: 239 AMQRYIGDVV--EKGGYMGAVTRHMLGLHRGIHGGRGWRRVLS 279
>gi|239815113|ref|YP_002944023.1| tRNA-dihydrouridine synthase A [Variovorax paradoxus S110]
gi|239801690|gb|ACS18757.1| TIM-barrel protein, yjbN family [Variovorax paradoxus S110]
Length = 333
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 158/298 (53%), Positives = 212/298 (71%), Gaps = 4/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L FN EEHP+A Q+G +EP
Sbjct: 21 MDWTDRHCRYFHRLMSRHALLYTEMVTTGALVHGDVPRHLRFNEEEHPVALQLGGSEPAD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+ + +TV
Sbjct: 81 LAHCARLGEEWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCVKAMVDATRLPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I SY+FVRDFVG VS AGCR FIVHARNA+L+ L+PKQNR+IP L+Y V+
Sbjct: 141 KHRIGIDKIESYEFVRDFVGAVSEAGCRGFIVHARNAWLQGLSPKQNREIPPLRYELVHR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FPEL+ INGGI ++ HL +DGVM+GREAY NP+ ++ +D +Y +PQ
Sbjct: 201 LKHEFPELDFSINGGISASAQVHEHLRLLDGVMVGREAYHNPWWLAEWDAEFYGAVPQPL 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
TR D+ + M Y+ ++ + + +SI RHMLGL + G+ +++Q+ S L T
Sbjct: 261 --TREDVESLMCDYMVREAAEHGTQ-WSSIARHMLGLRNGLPGARRWRQVWSDHRLKT 315
>gi|418529717|ref|ZP_13095649.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
gi|371453237|gb|EHN66257.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni ATCC 11996]
Length = 330
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 157/299 (52%), Positives = 214/299 (71%), Gaps = 4/299 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F EEHP+A Q+G +EP
Sbjct: 10 MDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEVEEHPVALQLGGSEPAD 69
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V + +TV
Sbjct: 70 LAHSARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADVVSVPVTV 129
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I SYDFVRDFVGTV+ AGC+ F+VHARNA+LK L+PK+NR++P L+Y V
Sbjct: 130 KHRIGIDKIESYDFVRDFVGTVADAGCQVFVVHARNAWLKGLSPKENREVPPLRYEVVAQ 189
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGGIKT + + L +DGVM+GREAY NP+ MS++D YY + + +
Sbjct: 190 LKRDFPGLTIAVNGGIKTDEIVLQQLQQVDGVMVGREAYHNPWWMSSWDALYYQDKSRER 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
TR I +M+LY+ ++ + + SI RHMLGL + G+ +++Q+ S L T+
Sbjct: 250 --TREHIEEQMVLYMEREAREHGT-HWYSIARHMLGLRNGLAGARRWRQVWSDHRLKTL 305
>gi|94310927|ref|YP_584137.1| tRNA-dihydrouridine synthase A [Cupriavidus metallidurans CH34]
gi|93354779|gb|ABF08868.1| tRNA-dihydrouridine synthase A [Cupriavidus metallidurans CH34]
Length = 351
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 156/292 (53%), Positives = 206/292 (70%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +++++WLYTEM TT A+L G+ LDF+A E P+A Q+G +EP
Sbjct: 31 MDWTDRHCRTFHRALSQHTWLYTEMVTTGALLHGDVARHLDFSAAEQPVALQLGGSEPVD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC++AMRD V + +TV
Sbjct: 91 LAQAAKLGEQWGYKEINLNCGCPSERVQRGAFGACLMAEPQLVADCVRAMRDVVSVPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I Y FVRDFVGT++ AGC FIVHARNA LK L+PK+NR+IP L+Y Y
Sbjct: 151 KHRIGIDTIEHYGFVRDFVGTIAEAGCDIFIVHARNAILKGLSPKENREIPPLRYEVAYE 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP LEI+INGG+ + EID HL ++DGVM+GR+AY +P+ +S D +Y
Sbjct: 211 LKREFPHLEILINGGVVSYGEIDEHLRHVDGVMIGRQAYHDPYFLSEMDARFYGGTA--P 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
I TR M YI + K + + TRHMLGL + I G ++++LS
Sbjct: 269 IVTREMAELTMQAYIGDLV--EKGGYMGAATRHMLGLHRGIYGGRGWRRVLS 318
>gi|260221113|emb|CBA29353.1| tRNA-dihydrouridine synthase A [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 370
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 209/296 (70%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L FN EEHP+A Q+G +EP
Sbjct: 54 MDWTDRHCRYFHRLLSRHALLYTEMVTTGALIHGDVPRHLRFNVEEHPVALQLGGSEPAD 113
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ Q WGYDEIN+NCGCPS RVQ G FGA LM + LV+DC+K+M D+V++ +TV
Sbjct: 114 LARAAKLGQDWGYDEININCGCPSERVQRGAFGACLMNEAPLVADCVKSMVDAVDVPVTV 173
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY FVRDFVGTV+ AGC FI HARNA+LK L+PK+NR+IP L+Y VY
Sbjct: 174 KHRIGIDKEESYSFVRDFVGTVADAGCNVFIAHARNAWLKGLSPKENREIPPLRYELVYQ 233
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP L I INGGI E+ HL ++DGVMLGREAY NP+ ++ +D +Y P
Sbjct: 234 LKKDFPHLTIAINGGITQTAEVAGHLEHVDGVMLGREAYHNPWWLAEWDSAFY-GAPDRD 292
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
I TR + +M+ Y+ ++ + + SI RHMLGL + G+ +++Q+ + L
Sbjct: 293 I-TREMVEAQMVAYMEREAAQHGT-HWYSIARHMLGLRHGLPGARRWRQVWTDHRL 346
>gi|241766211|ref|ZP_04764111.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
gi|241363710|gb|EER59087.1| TIM-barrel protein, yjbN family [Acidovorax delafieldii 2AN]
Length = 313
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 211/296 (71%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++ LYTEM TT A++ G+ + L +NAEEHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRYLHRLLSRHTLLYTEMVTTGALIHGDVERHLRYNAEEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V+I +TV
Sbjct: 62 LAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVQIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY FVRDF+GTV++AGC FIVHARNA+LK L+PK+NR++P L+Y V+
Sbjct: 122 KHRIGIDKDESYGFVRDFIGTVAAAGCEVFIVHARNAWLKGLSPKENREVPPLRYAVVHQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGI+T + L ++DGVM+GREAY NP+ ++ +D YY P+
Sbjct: 182 LKRDFPHLTIAINGGIQTDDVVHEQLGHLDGVMVGREAYHNPWWLARWDALYY-GAPESS 240
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
+ TR D+ M+ Y+ ++ + SI RHMLGL + GS +++Q+ S L
Sbjct: 241 L-TRDDVEATMVEYMAREAAAHGTP-WASIARHMLGLRHGLAGSRRWRQVWSDHRL 294
>gi|264678472|ref|YP_003278379.1| TIM-barrel protein, yjbN family [Comamonas testosteroni CNB-2]
gi|262208985|gb|ACY33083.1| TIM-barrel protein, yjbN family [Comamonas testosteroni CNB-2]
Length = 344
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 158/299 (52%), Positives = 215/299 (71%), Gaps = 4/299 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F AEEHP+A Q+G +EP
Sbjct: 24 MDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEAEEHPVALQLGGSEPAD 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V + +TV
Sbjct: 84 LAHSARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADVVSVPVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I SYDFVRDFVGTV+ AGC+ F+VHARNA+LK L+PK+NR+IP L+Y V
Sbjct: 144 KHRIGIDKIESYDFVRDFVGTVADAGCQVFVVHARNAWLKGLSPKENREIPPLRYEVVAQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGGIKT + L +DGVM+GREAY NP+ M+++D+ YY + + +
Sbjct: 204 LKRDFPGLTIAVNGGIKTDDVVQQQLQQVDGVMVGREAYHNPWWMASWDVLYYQDESRER 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
TR I +M+LY+ ++ + + SI RHMLGL + G+ +++Q+ S L T+
Sbjct: 264 --TREQIEEQMVLYMEREAREHGT-HWYSIARHMLGLRNGLAGARRWRQVWSDHRLKTL 319
>gi|299531032|ref|ZP_07044445.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni S44]
gi|298720989|gb|EFI61933.1| tRNA-dihydrouridine synthase A [Comamonas testosteroni S44]
Length = 327
Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 158/299 (52%), Positives = 214/299 (71%), Gaps = 4/299 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F AEEHP+A Q+G +EP
Sbjct: 7 MDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEAEEHPVALQLGGSEPAD 66
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V + +TV
Sbjct: 67 LAHSARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADVVSVPVTV 126
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I SYDFVRDFVGTV+ AGC+ F+VHARNA+LK L+PK+NR+IP L+Y V
Sbjct: 127 KHRIGIDKIESYDFVRDFVGTVADAGCQVFVVHARNAWLKGLSPKENREIPPLRYEVVAQ 186
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGGIKT + L +DGVM+GREAY NP+ M+++D YY + + +
Sbjct: 187 LKRDFPGLTIAVNGGIKTDDVVQQQLQQVDGVMVGREAYHNPWWMASWDALYYQDESRER 246
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
TR I +M+LY+ ++ + + SI RHMLGL + G+ +++Q+ S L T+
Sbjct: 247 --TREQIEEQMVLYMEREAREHGT-HWYSIARHMLGLRNGLAGARRWRQVWSDHRLKTL 302
>gi|350546169|ref|ZP_08915586.1| tRNA dihydrouridine synthase A [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526052|emb|CCD41462.1| tRNA dihydrouridine synthase A [Candidatus Burkholderia kirkii
UZHbot1]
Length = 328
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 155/292 (53%), Positives = 207/292 (70%), Gaps = 7/292 (2%)
Query: 15 ITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYD 73
++R++WLYTEM TT A+L G+ L F E P+A Q+G +EP LAKSAK+ ++WGYD
Sbjct: 1 MSRHAWLYTEMVTTGALLYGDVARHLAFTPAEAPVALQLGGSEPADLAKSAKLGEQWGYD 60
Query: 74 EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 133
EINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIG+D + Y+F
Sbjct: 61 EINLNCGCPSERVQCGAFGACLMNEPQLVADCVKAMRDAVSIPVTVKHRIGVDAVEDYEF 120
Query: 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193
VRDFVGTV+ AGC FIVHARNA LK L+PK+NR+IP LKY + Y LK+DFP LEI ING
Sbjct: 121 VRDFVGTVADAGCEVFIVHARNAILKGLSPKENREIPPLKYEYAYRLKRDFPHLEISING 180
Query: 194 GIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYKIPTRIDIINRMIL 252
GIKT E+D HL ++DGVMLGREAY +P++++ D + ++ P IP+R +I +I
Sbjct: 181 GIKTLDEVDEHLKHVDGVMLGREAYHHPYVLAGVDTRFCGADTP---IPSRDEIEAGLID 237
Query: 253 YIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFF 304
Y R +L + ++TRH LGL + + G+ ++++LS L + F
Sbjct: 238 YARAELARGTY--LGAVTRHALGLYRGVAGARGWRRVLSDNRRLATGDLTIF 287
>gi|333914801|ref|YP_004488533.1| yjbN family TIM-barrel protein [Delftia sp. Cs1-4]
gi|333745001|gb|AEF90178.1| TIM-barrel protein, yjbN family [Delftia sp. Cs1-4]
Length = 325
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 155/292 (53%), Positives = 207/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR HR ++R++ LYTEM TT A+L G+ L F AEEHP+A Q+G +EP
Sbjct: 10 MDWTDKHCRYLHRLLSRHTLLYTEMVTTGALLHGDVPRHLRFEAEEHPVALQLGGSEPSD 69
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ +WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V++ +TV
Sbjct: 70 LAQAARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEAPLVADCVKAMVDVVDMPVTV 129
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L+Y V
Sbjct: 130 KHRIGIDKDESYEFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYEIVAR 189
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPEL I INGGIK + L +DGVM+GREAY NP+ ++++D YY +
Sbjct: 190 LKQDFPELTIAINGGIKADATVQELLQQVDGVMVGREAYHNPWWLASWDALYYGDASVEH 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR I +M+ Y+ ++ + + SI RHMLGL + G+ +++Q+ S
Sbjct: 250 --TRESIEEQMVAYMEREARTHGT-HWYSIARHMLGLRNGLAGARRWRQVWS 298
>gi|348618093|ref|ZP_08884625.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816605|emb|CCD29291.1| tRNA-dihydrouridine synthase A [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 334
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 153/294 (52%), Positives = 204/294 (69%), Gaps = 9/294 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRHCR FHR +TR +WLYTEM A+L + L F+ EHP+A Q+G + P +
Sbjct: 9 MGWTDRHCRYFHRLLTRRAWLYTEMVAVGALLHSDAARHLAFDESEHPVALQLGGSNPDE 68
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK + GYDEINLNCGCPS RVQ G FGA LM +PL V++C++AMRD+V I +TV
Sbjct: 69 LADCAKRGEAAGYDEINLNCGCPSARVQRGVFGAALMAQPLRVAECVRAMRDAVSIPVTV 128
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DDI Y FVRDF+GTV+ AGC+TFIVHAR+A L LNPK+NR +P L+Y Y
Sbjct: 129 KHRIGLDDIEEYAFVRDFIGTVAHAGCQTFIVHARSAVLHGLNPKENRSVPPLRYEVAYR 188
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP LEII+NGG+ T +++ HL +IDGVMLGR AY NP+L++ D +Y +N P
Sbjct: 189 LKRDFPALEIILNGGVTTLAQVERHLAHIDGVMLGRAAYHNPWLLAGIDHRFYQANAP-- 246
Query: 239 KIPTRIDIINRM-ILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ R D+I + Y R+ +K ++TRH+LGL + G+ ++++ LS
Sbjct: 247 -VAQRADVIPALKAYYARESARGAPLK---AVTRHILGLYHGVPGARRWRRTLS 296
>gi|171058412|ref|YP_001790761.1| tRNA-dihydrouridine synthase A [Leptothrix cholodnii SP-6]
gi|170775857|gb|ACB33996.1| TIM-barrel protein, yjbN family [Leptothrix cholodnii SP-6]
Length = 342
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 151/292 (51%), Positives = 203/292 (69%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR + LYTEM TT A+L G++ LDF+A EHP+A Q+G ++P
Sbjct: 25 LDWTDRHCRHFHRLLTRRTRLYTEMVTTGALLHGDQARHLDFDAIEHPVALQLGGSDPAD 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V++ +TV
Sbjct: 85 LAACARLAQRWGYDEVNLNCGCPSERVQKGAFGACLMAEPALVADGVKAMRDAVDVPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SYDFVRDFVGT++ AGC FIVHARNA+L+ L+PK+NR IP L+Y VY
Sbjct: 145 KHRIGIDRGESYDFVRDFVGTLADAGCEVFIVHARNAWLQGLSPKENRDIPPLRYEQVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I+INGGI+T EI HL ++DGVM+GR+AY P+ M+ +DL ++
Sbjct: 205 LKRDFPQLTIVINGGIRTDDEIAAHLAHVDGVMVGRQAYHEPWQMAGWDLRFFGEA--AP 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
R + + Y++ Q + RH LGL + G+ ++Q S
Sbjct: 263 AGERAQVEAAWMDYLQAQHLGG--RPWPQAMRHALGLWNGVAGARSWRQFWS 312
>gi|388565745|ref|ZP_10152228.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
gi|388267108|gb|EIK92615.1| tRNA-dihydrouridine synthase A [Hydrogenophaga sp. PBC]
Length = 335
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 149/296 (50%), Positives = 210/296 (70%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR +T+++ LYTEM TT A++ G+ + L FNAEEHP+A Q+G +E +
Sbjct: 18 MDWTDRHCRFLHRLLTKHTLLYTEMVTTGALMHGSVQRHLRFNAEEHPVALQLGGSEADE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P V+D +KAMRD+V + +TV
Sbjct: 78 LARAARLGEEWGYDEINLNCGCPSERVQRGAFGACLMAEPQTVADGVKAMRDAVSLPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+FVRDFVGTV+ AGC FIVHARNA+L+ L+PK+NR++P L+Y +
Sbjct: 138 KHRIGIDKTESYEFVRDFVGTVADAGCEVFIVHARNAWLQGLSPKENREVPPLRYELAHR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG T ++I HL ++DGVMLGREAY +P+L++ +D ++ P
Sbjct: 198 LKRDFPRLTIAVNGGFTTNEQIAEHLQHVDGVMLGREAYHHPWLLTTWDEAFFGAPPSAL 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
R + + M+ Y+ + + +I RHMLGL ++G+ K++Q+ S L
Sbjct: 258 --DRDAVEDEMVRYMERAHAEDGCP-WYAIARHMLGLRHGLRGARKWRQVWSDHRL 310
>gi|337279450|ref|YP_004618922.1| tRNA-dihydrouridine synthase [Ramlibacter tataouinensis TTB310]
gi|334730527|gb|AEG92903.1| candidate tRNA-dihydrouridine synthase [Ramlibacter tataouinensis
TTB310]
Length = 331
Score = 332 bits (852), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 210/292 (71%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R + LYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 19 MDWTDRHCRYFHRLLSRRALLYTEMVTTGALLHGDVPRHLDFDAAEHPVALQLGGSEPAD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V++ +TV
Sbjct: 79 LAQCARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPRLVADCVKAMVDAVDLPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SYDFVRDFVGTV+ AGCR FIVHARNA+L+ L+PK+NR++P L+Y V+
Sbjct: 139 KHRIGIDKTESYDFVRDFVGTVAEAGCRVFIVHARNAWLQGLSPKENREVPPLRYELVHR 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+ ++ L +DGVM+GR+AY P+ ++++D + P +
Sbjct: 199 LKRDFPGLVIAINGGVTADDQVAGQLQVLDGVMVGRQAYHQPWWLASWDAAFL-GAPARE 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + +M+ Y+ +Q + +++ RHM+GL + G+ +++Q+ S
Sbjct: 258 L-SRETVEEQMVGYMERQAQAHGTP-WHAVARHMMGLYNGLPGARRWRQVWS 307
>gi|221066936|ref|ZP_03543041.1| TIM-barrel protein, yjbN family [Comamonas testosteroni KF-1]
gi|220711959|gb|EED67327.1| TIM-barrel protein, yjbN family [Comamonas testosteroni KF-1]
Length = 322
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 210/296 (70%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR FHR +++++ LYTEM TT A++ G+ L F AEEHP+A Q+G +EP
Sbjct: 2 MDWTDKHCRYFHRLLSQHTLLYTEMVTTGALVHGDVARHLRFEAEEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ +WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V + +TV
Sbjct: 62 LAHSARLGVQWGYDEINLNCGCPSERVQRGAFGACLMNEAALVADCVKAMADVVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I SYDFVRDFVGTV+ AGC F+VHARNA+LK L+PK+NR+IP L+Y V
Sbjct: 122 KHRIGIDKIESYDFVRDFVGTVADAGCHVFVVHARNAWLKGLSPKENREIPPLRYEVVAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGGIKT + L +DGVM+GREAY NP+ M+++D YY + + +
Sbjct: 182 LKRDFPGLTIAVNGGIKTDDVVQQQLQQVDGVMVGREAYHNPWWMASWDALYYQDESRER 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR I +M+LY+ ++ + + SI RHMLGL + G+ +++Q+ S L
Sbjct: 242 --TREGIEEQMVLYMEREAREHGT-HWYSIARHMLGLRNGLAGARRWRQVWSDHRL 294
>gi|300691712|ref|YP_003752707.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum PSI07]
gi|299078772|emb|CBJ51432.1| tRNA-dihydrouridine synthase A [Ralstonia solanacearum PSI07]
Length = 302
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 204/288 (70%), Gaps = 9/288 (3%)
Query: 25 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 83
M TT A+L G+ LDF+ EHP+A Q+G +EP LA+SA++ ++WGY EINLNCGCPS
Sbjct: 1 MVTTGALLHGDVPRHLDFDEMEHPVALQLGGSEPGDLAQSARLGERWGYREINLNCGCPS 60
Query: 84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 143
RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIGID I +YDFVRDFVGT++
Sbjct: 61 ERVQRGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE 120
Query: 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203
AGC TFIVHARNA LK L+PK+NR+IP L+Y VY LK+DFP+LEI++NGG++ ++ID
Sbjct: 121 AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGVQALEQIDA 180
Query: 204 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKI 263
HL ++DGVM+GREAY +P LM++FD YY PTR ++ + M+ YI + +
Sbjct: 181 HLAHVDGVMIGREAYHHPHLMASFDARYYG--ADTVAPTRAEVEDAMVDYIGRWVERGGY 238
Query: 264 KNINSITRHMLGLMKNIKGSNKFKQILSKPNLL----TIDNFQFFLNT 307
+ RHMLGL + + G+ ++++LS L T+D+ + T
Sbjct: 239 A--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRVKTLDDARALFET 284
>gi|149926267|ref|ZP_01914529.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
gi|149825085|gb|EDM84297.1| tRNA-dihydrouridine synthase A [Limnobacter sp. MED105]
Length = 314
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 157/311 (50%), Positives = 214/311 (68%), Gaps = 6/311 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR I++++WLYTEM TT A++ G++ L FN EEHP+AFQ+G ++P+
Sbjct: 2 IDWTDRHCRRFHRAISQHTWLYTEMITTGALVYGDRNRFLAFNDEEHPVAFQLGGSDPEH 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A+ AK I++ GYDE+N+N GCPS RVQ G FGA LM +P LV+DC+KAMRD+ ID+TV
Sbjct: 62 MARCAKWIEQAGYDELNMNVGCPSERVQKGAFGACLMAEPGLVADCVKAMRDACSIDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D S + DFVG VS AGC TFIVHARNA LK L+PK+NR IP L+Y V
Sbjct: 122 KHRIGLDYDESETMLFDFVGKVSEAGCNTFIVHARNAVLKGLSPKENRDIPPLRYEVVKR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ FP L+II+NGGI T + I+ HL + DG M+GREAY NP+L++ FD Q
Sbjct: 182 LKQHFPHLQIILNGGITTLEAIESHLQWADGCMIGREAYSNPWLLAGFDEVIGKPTTQ-- 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
TR+D+I+ + Y Q+L+ ++I SIT+ LGL G ++Q+LS L +
Sbjct: 240 -KTRLDVIDELRAYAEQELSRG--ESIRSITKSWLGLFHGQPGGRLYRQVLSDSTRLKAN 296
Query: 300 NFQFFLNTLNI 310
N+Q + L +
Sbjct: 297 NWQVVEDALAM 307
>gi|121605287|ref|YP_982616.1| tRNA-dihydrouridine synthase A [Polaromonas naphthalenivorans CJ2]
gi|120594256|gb|ABM37695.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas naphthalenivorans
CJ2]
Length = 337
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 151/300 (50%), Positives = 212/300 (70%), Gaps = 4/300 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ +DRHCR FHR ++R++ LYTEM TT A++ G+ L FNAEEHP+A Q+G +EP
Sbjct: 25 MDWSDRHCRYFHRLLSRHALLYTEMVTTGALIHGDVGRHLRFNAEEHPVALQLGGSEPAD 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++WGY EIN+NCGCPS RVQ G FGA LM +P LV+DC+KAM D+V + +TV
Sbjct: 85 LAHCARLGEQWGYSEININCGCPSERVQRGAFGACLMAEPKLVADCVKAMVDAVSVPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID Y+FVRDFVGTVS AGC TFIVHARNA+LK L+PK+NR++P L+Y V+
Sbjct: 145 KHRIGIDREERYEFVRDFVGTVSEAGCDTFIVHARNAWLKGLSPKENREVPPLRYELVHR 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKK+F L I +NGGI T +++ L +DGVM+GREAY NP+ ++++D +++ +
Sbjct: 205 LKKEFAHLTICVNGGITTGEQVQGQLLELDGVMIGREAYHNPWWLASWDADFFGAGGESI 264
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
TR + +M Y+ ++ + ++I RHMLGL + GS +++Q+ S L T+D
Sbjct: 265 --TREQVEAQMCDYMVREAAGHGTP-FSAIARHMLGLRHGLPGSRRWRQVWSDHKLKTMD 321
>gi|344171567|emb|CCA84183.1| tRNA-dihydrouridine synthase A [Ralstonia syzygii R24]
Length = 302
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 203/288 (70%), Gaps = 9/288 (3%)
Query: 25 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 83
M TT A+L G LDF+ EHP+A Q+G +EP LA+S ++ ++WGY EINLNCGCPS
Sbjct: 1 MVTTGALLHGEVPRHLDFDEMEHPVALQLGGSEPGDLAQSVRLGERWGYREINLNCGCPS 60
Query: 84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 143
RVQ G FGA LM +P LV+DC+KAMRD+V I +TVKHRIGID I +YDFVRDFVGT++
Sbjct: 61 ERVQRGAFGACLMAEPKLVADCVKAMRDTVSIPVTVKHRIGIDAIETYDFVRDFVGTIAE 120
Query: 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203
AGC TFIVHARNA LK L+PK+NR+IP L+Y VY LK+DFP+LEI++NGG++T ++ID
Sbjct: 121 AGCETFIVHARNAILKGLSPKENREIPPLRYEVVYQLKRDFPQLEILLNGGVQTLEQIDA 180
Query: 204 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKI 263
HL ++DGVM+GREAY +P LM++FD YY PTR ++ + M+ YI + +
Sbjct: 181 HLTHLDGVMIGREAYHHPHLMASFDARYYG--ADTVAPTRAEVEDAMVDYIGRWVERGGY 238
Query: 264 KNINSITRHMLGLMKNIKGSNKFKQILSKPNLL----TIDNFQFFLNT 307
+ RHMLGL + + G+ ++++LS L T+D+ + T
Sbjct: 239 A--GAAVRHMLGLYRGVAGARGWRRVLSDAKALGRVKTLDDARALFET 284
>gi|398804027|ref|ZP_10563030.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
gi|398095035|gb|EJL85385.1| tRNA dihydrouridine synthase A [Polaromonas sp. CF318]
Length = 352
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/293 (52%), Positives = 215/293 (73%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ G+ + L FNAEEHP+A Q+G +EP
Sbjct: 28 MDWTDRHCRHFHRLLSRHALLYTEMVTTGALIHGDVERHLRFNAEEHPVALQLGGSEPAD 87
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V + +TV
Sbjct: 88 LAQCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMVDVVAVPVTV 147
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+FVRDFVGTVS AGC+ FIVHARNA+LK L+PK+NR++P L+Y V+
Sbjct: 148 KHRIGIDKGESYEFVRDFVGTVSEAGCKVFIVHARNAWLKGLSPKENREVPPLRYELVHR 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L I INGGI T++E+ HL +DGVM+GREAY NP+ ++++D ++ +
Sbjct: 208 LKREFPHLGICINGGINTQEEVAGHLAALDGVMIGREAYHNPWWLASWDSAFFG---AAE 264
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P +R + ++M Y+ ++ + ++I RHMLGL + G+ +++Q+ S
Sbjct: 265 SPLSREAVESQMCDYMVREAAEHGTPR-SAIARHMLGLRNGLPGARRWRQVWS 316
>gi|407939138|ref|YP_006854779.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
gi|407896932|gb|AFU46141.1| tRNA-dihydrouridine synthase A [Acidovorax sp. KKS102]
Length = 328
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 204/294 (69%), Gaps = 8/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ TDRHCR FHR +TR + LYTEM IL G ++H L FNAEEHP+A Q+G NEP
Sbjct: 2 MDWTDRHCRYFHRLLTRQTLLYTEMVNAGGILYGGTERH-LRFNAEEHPVALQLGGNEPD 60
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
KLA++A++ ++WGYDEINLNCGCPS+RVQ G FGA LM P LV+D IKAM+D V + +T
Sbjct: 61 KLAQAARLGEEWGYDEINLNCGCPSDRVQRGAFGASLMKAPQLVADGIKAMKDVVSVPVT 120
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIGID + Y FVRDFVGTV+ AGC FIVHARNA+L+ L+PK+NR IP L+Y V+
Sbjct: 121 VKHRIGIDKVEDYGFVRDFVGTVAEAGCTVFIVHARNAWLQGLSPKENRDIPPLRYEVVH 180
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK +FP+ I INGGI T + L ++DGVM+GREAY NP+ ++ +D YY P
Sbjct: 181 RLKAEFPQFTIAINGGITTDDVVQEQLQHLDGVMIGREAYHNPWWLARWDQLYYGGAP-- 238
Query: 239 KIP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P TR ++ M+ Y+ ++ + I RHMLGL ++ G+ ++Q+ S
Sbjct: 239 -CPLTREEVELAMVEYMEREAAQHGTP-WPHIARHMLGLRHSLPGARIWRQVWS 290
>gi|398807368|ref|ZP_10566246.1| tRNA dihydrouridine synthase A [Variovorax sp. CF313]
gi|398089378|gb|EJL79894.1| tRNA dihydrouridine synthase A [Variovorax sp. CF313]
Length = 329
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 208/296 (70%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L F+AEEHP+A Q+G +EP
Sbjct: 17 MDWTDRHCRYFHRLLSRHALLYTEMVTTGALVHGDVPRHLRFHAEEHPVALQLGGSEPAD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V + +TV
Sbjct: 77 LAHCAKLGEEWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVSVPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I SY+FVRDFVG VS AGC+TFIVHARNA+LK L+PKQNR+IP L+Y V+
Sbjct: 137 KHRIGIDKIESYEFVRDFVGQVSEAGCQTFIVHARNAWLKGLSPKQNREIPPLRYELVHR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP L INGGI ++ HL +DGVM+GREAY NP+ ++ +D +Y Q
Sbjct: 197 LKHEFPSLRFSINGGISVSAQVHEHLRLLDGVMVGREAYHNPWWLAEWDAEFYGAEAQSL 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR ++ + M Y+ ++ + + SI RHMLGL + G+ +++Q+ S L
Sbjct: 257 --TRDEVESLMCDYMAREAAEHGTQ-WWSIARHMLGLRNGLPGARRWRQVWSDHRL 309
>gi|254252479|ref|ZP_04945797.1| TIM-barrel protein, yjbN family [Burkholderia dolosa AUO158]
gi|124895088|gb|EAY68968.1| TIM-barrel protein, yjbN family [Burkholderia dolosa AUO158]
Length = 242
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 143/225 (63%), Positives = 180/225 (80%), Gaps = 1/225 (0%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR +WLYTEM TT A+L G+ + L F E P+A Q+G +EP
Sbjct: 18 LDWTDRHCRSFHRTLTRNTWLYTEMITTGALLFGDVQRHLGFTPSESPVALQLGGSEPDD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LARAAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPQLVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D I Y FVRDFVGT++ AGCRTFIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 138 KHRIGVDAIEDYAFVRDFVGTIADAGCRTFIVHARNAILKGLSPKENREIPPLKYDYAYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLM 224
LK+DFP LEI+INGGIKT E+ LHL ++DG MLGREAY NP+++
Sbjct: 198 LKRDFPSLEIVINGGIKTLDEVALHLEHVDGAMLGREAYHNPYVL 242
>gi|319794422|ref|YP_004156062.1| tim-barrel protein, yjbn family [Variovorax paradoxus EPS]
gi|315596885|gb|ADU37951.1| TIM-barrel protein, yjbN family [Variovorax paradoxus EPS]
Length = 324
Score = 326 bits (836), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 157/298 (52%), Positives = 211/298 (70%), Gaps = 4/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ G+ L FNAEEHP+A Q+G +EP
Sbjct: 12 MDWTDRHCRYFHRLMSRHALLYTEMVTTGALVHGDVPRHLRFNAEEHPVALQLGGSEPAD 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V + +TV
Sbjct: 72 LAHCAKLGEEWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVSVPVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID I Y+FVRDFVG VS AGC TFIVHARNA+L+ L+PKQNR+IP L+Y V+
Sbjct: 132 KHRIGIDKIERYEFVRDFVGQVSEAGCDTFIVHARNAWLQGLSPKQNREIPPLRYALVHR 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L+ INGGI +++ HL +DGVM+GREAY NP+ ++ +D ++ PQ
Sbjct: 192 LKHDFPGLKFSINGGISVNEQVHEHLRLLDGVMVGREAYHNPWWLAEWDAEFFGAAPQPL 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
TR ++ + M Y+ ++ + + +SI RHMLGL + G+ +++Q+ S + T
Sbjct: 252 --TREEVESLMCDYMVREAAEHGTQ-WSSIARHMLGLRNGLPGARRWRQVWSDHRMKT 306
>gi|365091176|ref|ZP_09328683.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
gi|363416294|gb|EHL23414.1| tRNA-dihydrouridine synthase A [Acidovorax sp. NO-1]
Length = 328
Score = 326 bits (836), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 152/294 (51%), Positives = 204/294 (69%), Gaps = 8/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ TDRHCR FHR +TR + LYTEM AI+ G ++H L FNAEEHP+A Q+G NEP
Sbjct: 7 MDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIHGGTERH-LRFNAEEHPVALQLGGNEPD 65
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
KLA++A++ +WGY EINLNCGCPS+RVQ G FGA LM P LV+DC+KAM+D V++ +T
Sbjct: 66 KLAEAARLGAQWGYGEINLNCGCPSDRVQRGAFGASLMKSPQLVADCVKAMKDVVDVPVT 125
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIGID + Y FVRDF+GTV+ AGC FIVHARNA+L+ L+PK+NR +P L+Y V+
Sbjct: 126 VKHRIGIDKVEDYGFVRDFIGTVADAGCSVFIVHARNAWLQGLSPKENRDVPPLRYEVVH 185
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK +FP+ I INGGI T + L ++DGVM+GREAY NP+ ++ +D YY P
Sbjct: 186 RLKAEFPQFTIAINGGITTDAVVQEQLTHLDGVMIGREAYHNPWWLARWDQLYYGGAP-- 243
Query: 239 KIP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P TR ++ M+ Y+ ++ I RHMLGL ++ G+ ++Q+ S
Sbjct: 244 -CPLTREEVELAMVEYMEREAAQYGTP-WPHIARHMLGLRHSLPGARIWRQVWS 295
>gi|397169543|ref|ZP_10492975.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella aestuarii B11]
gi|396088847|gb|EJI86425.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella aestuarii B11]
Length = 317
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 212/310 (68%), Gaps = 4/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++++ LYTEM TT AI+ K L FN +E P+ Q+G +EP +L
Sbjct: 2 LDWTDRHCRYFHRLMSKHAVLYTEMVTTGAIIHGKGDYLGFNPQEQPVVLQLGGSEPAEL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY INLN GCPS+RVQNG FGA LM +P LV+D +KAM+D++ I ++VK
Sbjct: 62 AHCAKLAEQRGYAAINLNVGCPSDRVQNGMFGACLMARPQLVADSVKAMQDAISIPVSVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD + Y F++DFV TV++AGCR F++HAR A+LK L+PK+NR+IP L Y VY L
Sbjct: 122 TRIGIDDSDEYQFLQDFVATVAAAGCRQFVIHARKAWLKGLSPKENREIPPLNYPRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L+I INGGIKT E + L Y+DGVM+GREAY NP+L+S D Y ++ + +
Sbjct: 182 KQDFPTLDISINGGIKTLAEAEQQLQYLDGVMIGREAYTNPYLLSQVDAVLYQDV--WSV 239
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
P + ++ M+ YI QQ+ I RHMLGL + G+ +++++LS+ L
Sbjct: 240 PGQHQLVRLMVPYIEQQMQQG--ARFWHIARHMLGLFQGQPGARQWRRLLSEQGHLADAK 297
Query: 301 FQFFLNTLNI 310
+ L L++
Sbjct: 298 PELLLQALSL 307
>gi|351728741|ref|ZP_08946432.1| tRNA-dihydrouridine synthase A [Acidovorax radicis N35]
Length = 328
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/294 (51%), Positives = 203/294 (69%), Gaps = 8/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ TDRHCR FHR +TR + LYTEM AI+ G ++H L FNAEEHP+A Q+G NEP
Sbjct: 2 MDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIHGGTERH-LRFNAEEHPVALQLGGNEPD 60
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
+LA++A++ +WGY EINLNCGCPS+RVQ G FGA LM P LV+DC+KAM+D V++ +T
Sbjct: 61 RLAEAARLGAQWGYGEINLNCGCPSDRVQRGAFGASLMKSPQLVADCVKAMKDVVDVPVT 120
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIGID + Y FVRDF+GTV+ AGC FIVHARNA+L+ L+PK+NR IP L+Y V+
Sbjct: 121 VKHRIGIDKVEDYGFVRDFIGTVADAGCTVFIVHARNAWLQGLSPKENRDIPPLRYEVVH 180
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK +FP+ I INGGI T + L ++DGVM+GREAY NP+ ++ +D YY P
Sbjct: 181 QLKAEFPQFTIAINGGIATDAVVQEQLEHLDGVMIGREAYHNPWWLARWDQLYYGGAP-- 238
Query: 239 KIP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P TR ++ M+ Y+ ++ I RHMLGL ++ G+ ++Q S
Sbjct: 239 -CPLTREEVELAMVEYMEREAAQYGTP-WPHIARHMLGLRHSLPGARIWRQAWS 290
>gi|375110873|ref|ZP_09757088.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
gi|374569043|gb|EHR40211.1| tRNA-U16,U17-dihydrouridine synthase [Alishewanella jeotgali KCTC
22429]
Length = 331
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 211/310 (68%), Gaps = 4/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++++ LYTEM TT AI+ K L FN +E P+ Q+G +EP +L
Sbjct: 16 LDWTDRHCRYFHRLMSKHAVLYTEMVTTGAIIHGKGDYLGFNPQEQPVVLQLGGSEPAEL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY INLN GCPS+RVQNG FGA LM +P LV+D +KAM+D+V I ++VK
Sbjct: 76 AHCAKLAEQRGYAAINLNVGCPSDRVQNGMFGACLMARPQLVADSVKAMQDAVSIPVSVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD + Y F++DFV TV++AGCR F++HAR A+LK L+PK+NR+IP L Y VY L
Sbjct: 136 TRIGIDDSDEYQFLQDFVATVAAAGCRQFVIHARKAWLKGLSPKENREIPPLNYPRVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L+I INGGIKT E + L Y+DGVM+GREAY NP+L+S D Y ++ + +
Sbjct: 196 KQDFPTLDISINGGIKTLAEAEQQLQYLDGVMIGREAYTNPYLLSQVDAVLYQDV--WSV 253
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
P + ++ M+ YI QQ+ I RHMLGL + G+ +++++LS+ L
Sbjct: 254 PGQHQLVRLMVPYIEQQMQQG--ARFWHIARHMLGLFQGQPGARQWRRLLSEQGHLADAK 311
Query: 301 FQFFLNTLNI 310
+ L L +
Sbjct: 312 PELLLQALAL 321
>gi|421745269|ref|ZP_16183127.1| tRNA-dihydrouridine synthase A [Cupriavidus necator HPC(L)]
gi|409776291|gb|EKN57710.1| tRNA-dihydrouridine synthase A [Cupriavidus necator HPC(L)]
Length = 302
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 148/272 (54%), Positives = 193/272 (70%), Gaps = 5/272 (1%)
Query: 21 LYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79
+YTEM TT A+L G+ LDF+ E P+A Q+G +EP LA SAK+ ++WGY EINLNC
Sbjct: 1 MYTEMVTTGALLHGDVARHLDFDPAEQPVALQLGGSEPADLAASAKLGERWGYAEINLNC 60
Query: 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
GCPS RVQ G FGA LM +P LV+DC++AMRD+V + +TVKHRIGID I YDFVRDFVG
Sbjct: 61 GCPSERVQRGAFGACLMAEPQLVADCVRAMRDAVSVPVTVKHRIGIDTIEHYDFVRDFVG 120
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
T++ AGC+TFIVHARNA LK L+PK+NR+IP L+Y Y LK++FP+LEI+INGGI
Sbjct: 121 TIAEAGCQTFIVHARNAILKGLSPKENREIPPLRYEVAYQLKREFPQLEILINGGITRYD 180
Query: 200 EIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN 259
EID HL ++DGVM+GREAY PFL++ D YY + P+R+D M YI +
Sbjct: 181 EIDAHLRHVDGVMIGREAYHQPFLLAEVDRRYYGDTG--PSPSRLDAELAMQRYIGDLVE 238
Query: 260 NNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ + TRHMLGL + + G ++++LS
Sbjct: 239 RGGY--MGAATRHMLGLYRGVAGGRGWRRVLS 268
>gi|251793819|ref|YP_003008551.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|422337222|ref|ZP_16418194.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
gi|247535218|gb|ACS98464.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus NJ8700]
gi|353345774|gb|EHB90065.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus F0387]
Length = 327
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 154/292 (52%), Positives = 207/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T QAI+ K LDF+A EHP+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHTLLYTEMVTAQAIIHAKYDHLDFDAAEHPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM KP LV++C++ M+ +V+I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKPNLVAECVQQMQSAVQIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ +FV TV GCR FIVHAR A+L L+PKQNR+IP+L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLYNFVQTVKQVGCREFIVHARKAWLSGLSPKQNREIPLLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ + D + P I
Sbjct: 199 KRDFPDLLISINGGIKTIEEIQQHLQHVDGVMVGREAYQNPSLLGHIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + RM+ YI QL+ +N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 ITPRQAVARMLPYIESQLSQGVY--LNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|89900729|ref|YP_523200.1| tRNA-dihydrouridine synthase A [Rhodoferax ferrireducens T118]
gi|89345466|gb|ABD69669.1| TIM-barrel protein, yjbN family [Rhodoferax ferrireducens T118]
Length = 331
Score = 323 bits (827), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 207/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +T+++ LYTEM TT A++ G+ L +N +EHP+A Q+G +EP
Sbjct: 20 LDWTDRHCRYFHRLLTQHALLYTEMVTTGALIYGDVSRHLRYNEQEHPVALQLGGSEPAD 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V + +TV
Sbjct: 80 LARCAKLGEEWGYDEVNLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMVDVVSVPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+FVRDFVG+VS AGCRTFIVHARNA+LK L+PK+NR +P L+Y Y
Sbjct: 140 KHRIGIDKTESYEFVRDFVGSVSEAGCRTFIVHARNAWLKGLSPKENRDVPPLRYELAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I+INGGI + +I HL ++DGVMLGREAY NP+ ++++D ++
Sbjct: 200 LKRDFPSLVIVINGGITSSAQIAGHLLHLDGVMLGREAYHNPWWLASWDATFFGA--DAT 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR + +M Y+ ++ + ++ RHMLGL + G+ ++Q+ S
Sbjct: 258 ETTREQVEQQMCDYMTREAAEHGTP-WPTMARHMLGLRHGLPGARHWRQVWS 308
>gi|160899058|ref|YP_001564640.1| tRNA-dihydrouridine synthase A [Delftia acidovorans SPH-1]
gi|160364642|gb|ABX36255.1| TIM-barrel protein, yjbN family [Delftia acidovorans SPH-1]
Length = 336
Score = 323 bits (827), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 208/296 (70%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR HR ++R++ LYTEM TT A+L G+ L F AEEHP+A Q+G +EP
Sbjct: 21 MDWTDKHCRYLHRLLSRHTLLYTEMVTTGALLHGDVPRHLRFEAEEHPVALQLGGSEPSD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ +WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+KAM D V++ +TV
Sbjct: 81 LAQAARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEAPLVADCVKAMVDVVDVPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L+Y V
Sbjct: 141 KHRIGIDKDESYEFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYEIVAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPEL I INGGIK + L +DGVM+GREAY NP+ ++++D YY +
Sbjct: 201 LKQDFPELTIAINGGIKADATVQDLLQQVDGVMVGREAYHNPWWLASWDALYYGDASVEH 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR I +M+ Y+ ++ + + SI RHMLGL + G+ +++Q+ S L
Sbjct: 261 --TRESIEEQMVAYMEREARTHGT-HWYSIARHMLGLRNGLAGARRWRQVWSNHQL 313
>gi|410666192|ref|YP_006918563.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
gi|409028549|gb|AFV00834.1| tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM
21679]
Length = 325
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 213/292 (72%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M +DRHCR F R +++ ++LYTEM TT A++ G+++ L++N EEHP+A Q+G + P++
Sbjct: 14 MEWSDRHCRYFWRLLSKQAFLYTEMVTTGALIHGDRERFLNYNPEEHPVALQLGGSNPQE 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + WGYDE+NLNCGCPS+RVQNG GA LM +P LV+DCIKAM+D+V+I +TV
Sbjct: 74 LAACAQMAESWGYDEVNLNCGCPSDRVQNGMIGACLMAQPQLVADCIKAMQDAVQIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++ + DFV +++ GC TFIVHAR A+LK L+PK+NR+IP L Y+ V+
Sbjct: 134 KHRIGIDDMDDDQGLLDFVAPIAATGCVTFIVHARKAWLKGLSPKENREIPPLNYDRVHK 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+LEIIINGG+KT + L ++DGVM+GREAY NP+L+S D Y P
Sbjct: 194 LKQEFPDLEIIINGGLKTLADCQAQLAHVDGVMVGREAYHNPWLLSEVDAAIYGQPPVTI 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
R+ +I++M+ YI +QL+ ++ ITRH+LGL G +F++I+S
Sbjct: 254 --DRLAVIDQMMGYIDKQLSAG--MRLHHITRHLLGLFHGQPGGKQFRRIIS 301
>gi|326317525|ref|YP_004235197.1| yjbN family TIM-barrel protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374361|gb|ADX46630.1| TIM-barrel protein, yjbN family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 320
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 205/297 (69%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ GN + L FNAEEHP+A Q+G +EP
Sbjct: 2 MDWTDRHCRYFHRLLSRHALLYTEMVTTGALVHGNVERHLRFNAEEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V + +TV
Sbjct: 62 LAHSARLGERWGYGEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI Y FVRDFVGTV+ AGCR FIVHARNA+L+ L+PK+NR+IP L+Y+ V+
Sbjct: 122 KHRIGIGRSEEYAFVRDFVGTVAEAGCRVFIVHARNAWLEGLSPKENREIPPLRYDVVHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK +FP+L I INGG+ T + L +DG M+GREAY NP+ ++ +D Y+ +
Sbjct: 182 LKAEFPDLVIAINGGLATDDAVQEALGGGLDGAMIGREAYHNPWWLARWDALYFGDAASG 241
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR M+ Y+ ++ + + S+ RHMLGL + G+ +++Q+ S L
Sbjct: 242 L--TREAAEEAMVDYMAREAAQHGT-SWYSVARHMLGLRNGLPGARRWRQVWSDHRL 295
>gi|254482016|ref|ZP_05095258.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
gi|214037706|gb|EEB78371.1| tRNA dihydrouridine synthase A subfamily protein [marine gamma
proteobacterium HTCC2148]
Length = 315
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 216/293 (73%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ +D HCR F R +++ + LYTEM TT A++ G+++ L FNAEEHP+A Q+G + P
Sbjct: 2 MDWSDHHCRYFWRLLSKQALLYTEMVTTGALIHGDRERFLRFNAEEHPVALQLGGSNPND 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+ Q+W YDE+NLNCGCPS+RVQ+G FGA LM +P LV+D +KAMRD+ + +TV
Sbjct: 62 LAQCARWAQEWHYDEVNLNCGCPSDRVQSGMFGACLMAQPELVADGVKAMRDATLLPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + DFVG V+ AGC FIVHAR A+LK L+PK+NR+IP L Y++VY
Sbjct: 122 KHRIGIDDMDSYEQMLDFVGPVADAGCEVFIVHARKAWLKGLSPKENREIPPLVYDWVYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+D P+LEI+INGGI+T ++ + HL ++DGVM+GREAY+NP++++ D +
Sbjct: 182 LKRDLPDLEIVINGGIQTIEDCEDHLAHVDGVMIGREAYQNPWMLAEVDSRLFGI--DKV 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ ++ Y+ QQL ++N ITRH+LGL + + G+ KF++ LS+
Sbjct: 240 AESRDDVLLGLLPYVEQQLALG--THLNHITRHILGLYQGVPGARKFRRHLSE 290
>gi|392954830|ref|ZP_10320381.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
gi|391857487|gb|EIT68018.1| tRNA-dihydrouridine synthase A [Hydrocarboniphaga effusa AP103]
Length = 345
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 207/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR FHR + ++ LYTEM TT A+L G+ + L F+A EHP+A Q+G +EP
Sbjct: 29 MDWTDTHCRSFHRLLAPHALLYTEMVTTGALLHGDVERHLRFDASEHPLALQLGGSEPDA 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A + ++W YDE+NLNCGCPS+RVQ G FGA LM + V+DC++AMR + ++ +TV
Sbjct: 89 LARCAALAEQWQYDEVNLNCGCPSDRVQEGRFGACLMREADRVADCVRAMRSATDLPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GIDD Y F+R FV TV++AGC TFIVHAR A+L+ L+P++NR+IP L Y VY
Sbjct: 149 KHRVGIDDSEDYAFMRGFVETVAAAGCTTFIVHARKAWLQGLSPRENREIPPLTYEHVYR 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+L ++INGGI+T + HL Y+DGVMLGREAY+NP+ ++ D +
Sbjct: 209 LKQEFPQLTVLINGGIRTLDQCRQHLRYVDGVMLGREAYENPYALAGLDRELFET--DGD 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
IPTR +I+N + Y++++L+ +N ITRH+LGL + G F++ LS+
Sbjct: 267 IPTREEIMNAYLPYVQRELDRGTA--LNRITRHILGLYRGQNGGRAFRRHLSE 317
>gi|88706546|ref|ZP_01104250.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
gi|88699258|gb|EAQ96373.1| tRNA-dihydrouridine synthase A [Congregibacter litoralis KT71]
Length = 359
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 210/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ +DRHCR F R ++R + LYTEM TT A++ G+++ L F+ EE PIA Q+G + P
Sbjct: 47 MDWSDRHCRYFWRLLSRRARLYTEMVTTGALIHGDRQRFLQFHEEEAPIALQLGGSNPGD 106
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK + WGYDE+NLNCGCPS+RVQNG FGA LM + LV DCI AMR + ID+TV
Sbjct: 107 LARCAKWAEDWGYDEVNLNCGCPSDRVQNGAFGACLMGEASLVRDCISAMRSACAIDVTV 166
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + SY+ + DFVGTV+ G FIVHAR A+LK L+PK+NR++P L Y +VY
Sbjct: 167 KHRIGIDHMESYEELCDFVGTVAEGGSEVFIVHARKAWLKGLSPKENREVPPLNYPWVYQ 226
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPEL I++NGGI++ ++ HL ++DGVMLGR AY NP++++ D + ++ Q +
Sbjct: 227 LKEDFPELTIVMNGGIESLEDSQTHLGHVDGVMLGRSAYHNPWVLAEVDHRLFGDVKQPR 286
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R DII M+ Y+ ++L + +N ITRH+LGL + + G+ +++++LS+
Sbjct: 287 Y--REDIIEAMLPYVEKELAHG--ARLNQITRHLLGLYQEVPGARRYRRLLSE 335
>gi|120611162|ref|YP_970840.1| tRNA-dihydrouridine synthase A [Acidovorax citrulli AAC00-1]
gi|120589626|gb|ABM33066.1| tRNA-U16,U17-dihydrouridine synthase [Acidovorax citrulli AAC00-1]
Length = 347
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/297 (50%), Positives = 205/297 (69%), Gaps = 5/297 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R++ LYTEM TT A++ G+ + L FNAEEHP+A Q+G +EP
Sbjct: 29 MDWTDRHCRYFHRLLSRHALLYTEMVTTGALVHGDVERHLRFNAEEHPVALQLGGSEPGD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ ++WGY EINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D+V + +TV
Sbjct: 89 LAHSARLGERWGYGEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDAVSVPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI Y FVRDFVGTV+ AGCR FIVHARNA+L+ L+PK+NR+IP L+Y+ V+
Sbjct: 149 KHRIGIGRSEEYAFVRDFVGTVAEAGCRVFIVHARNAWLEGLSPKENREIPPLRYDVVHR 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK +FP+L I INGG+ T + L +DG M+GREAY NP+ ++ +D Y+ +
Sbjct: 209 LKAEFPDLVIAINGGLATDAAVQEALGGGLDGAMIGREAYHNPWWLARWDALYFGDAASG 268
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR M+ Y+ ++ + + S+ RHMLGL + G+ +++Q+ S L
Sbjct: 269 L--TREAAEEAMVDYMAREAAQHGT-SWYSVARHMLGLRNGLPGARRWRQVWSDHRL 322
>gi|395006482|ref|ZP_10390300.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
gi|394315574|gb|EJE52368.1| tRNA dihydrouridine synthase A [Acidovorax sp. CF316]
Length = 341
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/293 (51%), Positives = 206/293 (70%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ TDRHCR FHR +TR + LYTEM AI+ G ++H L FNAEEHP+A Q+G NEP+
Sbjct: 27 MDWTDRHCRYFHRLLTRQTLLYTEMVNAGAIIHGGTERH-LRFNAEEHPVALQLGGNEPE 85
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
LA++A++ +WGY EINLNCGCPS+RVQ G FGA LM P LV+D +KAM+D V++ +T
Sbjct: 86 LLAQAARLGAQWGYGEINLNCGCPSDRVQRGAFGASLMKAPQLVADGVKAMKDVVDVPVT 145
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIGID + Y FVRDFVGTV+ AGC FIVHARNA+L+ L+PK+NR IP L+Y V+
Sbjct: 146 VKHRIGIDKVEDYGFVRDFVGTVADAGCTVFIVHARNAWLQGLSPKENRDIPPLRYEVVH 205
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP+L I INGGI+ + + L ++DGVM+GREAY NP+ ++ +D YY P
Sbjct: 206 RLKQEFPQLTIAINGGIQADEVVLEQLQHLDGVMIGREAYHNPWWLARWDQIYYGGEPCA 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR ++ M+ Y+ ++ + I RHMLGL ++G+ ++Q+ S
Sbjct: 266 L--TREEVELAMVDYMEREAALHGTP-WPHIARHMLGLRHGLRGARLWRQVWS 315
>gi|319762963|ref|YP_004126900.1| tim-barrel protein, yjbn family [Alicycliphilus denitrificans BC]
gi|317117524|gb|ADV00013.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans BC]
Length = 316
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 200/296 (67%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++ LYTEM TT A+L G+ L F EHP+A Q+G +EP
Sbjct: 7 MDWTDRHCRHLHRLLSRHALLYTEMVTTGALLHGDVPRHLRFGEAEHPVALQLGGSEPAD 66
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ +WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V++ +TV
Sbjct: 67 LAHSARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDVVDMPVTV 126
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID Y FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L+Y
Sbjct: 127 KHRIGIDQTEGYGFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYEVAAR 186
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L I ING ++T + L +DGVM+GREAY NP+ ++ +D ++ P
Sbjct: 187 LKSDFPQLTIAINGSLQTDAAVLEQLALVDGVMVGREAYHNPWWLTRWDELFFGAKP--G 244
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR + M+ Y+ ++ + + ++ RHMLGL + G+ +++Q+ S L
Sbjct: 245 TLTREQVEEEMVAYMEREAAAHGT-HWYAVARHMLGLRNGLPGARRWRQVWSDHRL 299
>gi|121607273|ref|YP_995080.1| tRNA-dihydrouridine synthase A [Verminephrobacter eiseniae EF01-2]
gi|121551913|gb|ABM56062.1| TIM-barrel protein, yjbN family [Verminephrobacter eiseniae EF01-2]
Length = 360
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 203/301 (67%), Gaps = 8/301 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ TDRHCR FHR +TR + LYTEM A+L G ++H L NAEEHP+A Q+G NEP
Sbjct: 38 MDWTDRHCRYFHRLLTRQTRLYTEMVNAGAVLHGGTERH-LRLNAEEHPVALQLGGNEPA 96
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
LA++A++ +WGYDEINLNCGCPS+RVQ G FGA LM P V+DC+KAMRD V+ +T
Sbjct: 97 DLARAARLGAQWGYDEINLNCGCPSDRVQRGAFGARLMQTPQRVADCVKAMRDMVDRPVT 156
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIGID SY FVRDFVG V+ AGC FIVHARNA+L+ L+PK+NR+IP L+Y V+
Sbjct: 157 VKHRIGIDQGQSYGFVRDFVGVVADAGCSVFIVHARNAWLQGLSPKENREIPPLRYALVH 216
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN---- 234
LK DFP L ++INGGI T + L+ +DGVM+GR+AY P+ ++ +D YY+N
Sbjct: 217 QLKADFPRLTVVINGGIATDAVVQQQLHLLDGVMVGRQAYHQPWWLARWDALYYANRSGP 276
Query: 235 LPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPN 294
TR + M+ Y+ ++ + + I RHMLGL ++ G+ ++Q+ S
Sbjct: 277 CAGASPLTREAVERAMVAYMEREAALHGTPWPH-IARHMLGLRHSLPGARLWRQLWSDHR 335
Query: 295 L 295
L
Sbjct: 336 L 336
>gi|91788026|ref|YP_548978.1| tRNA-dihydrouridine synthase A [Polaromonas sp. JS666]
gi|91697251|gb|ABE44080.1| tRNA-U16,U17-dihydrouridine synthase [Polaromonas sp. JS666]
Length = 344
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 151/292 (51%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ ++ LYTEM TT A++ G+ L F EEHP+A Q+G +EP +
Sbjct: 32 MDWTDRHCRHFHRLLSGHALLYTEMVTTGALIHGDVARHLRFGVEEHPVALQLGGSEPAE 91
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A + ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V + +TV
Sbjct: 92 LAQCATLGEQWGYDEINLNCGCPSERVQRGSFGACLMAEPQLVADCVKAMVDVVSVPVTV 151
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY FVRDFVG VS AGC TFIVHARNA+LK L+PK+NR++P L+Y V+
Sbjct: 152 KHRIGIDKGESYGFVRDFVGAVSEAGCSTFIVHARNAWLKGLSPKENREVPPLRYELVHR 211
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP+L I INGGI T ++ L +DGVM+GREAY NP+ +S +D +Y +
Sbjct: 212 LKAEFPQLTIAINGGITTSTQVAEQLQQLDGVMIGREAYHNPWWLSVWDAAFYGVADAGR 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR + +M+ Y+ ++ + +SI RHMLGL + G+ +++Q+ S
Sbjct: 272 --TRESVEAQMVDYMAREAAEHGTP-WSSIARHMLGLRHGLPGARRWRQVWS 320
>gi|330825043|ref|YP_004388346.1| yjbN family TIM-barrel protein [Alicycliphilus denitrificans K601]
gi|329310415|gb|AEB84830.1| TIM-barrel protein, yjbN family [Alicycliphilus denitrificans K601]
Length = 316
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 200/296 (67%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++ LYTEM TT A+L G+ L F EHP+A Q+G +EP
Sbjct: 7 MDWTDRHCRHLHRLLSRHALLYTEMVTTGALLHGDVPRHLRFGEAEHPVALQLGGSEPAD 66
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ +WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V++ +TV
Sbjct: 67 LAHSARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEPRLVADCVKAMVDVVDMPVTV 126
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID Y FVRDFVGTV+ AGCR FIVHARNA+LK L+PK+NR+IP L+Y
Sbjct: 127 KHRIGIDQTEDYGFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYEVAAR 186
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L I ING ++T + L +DGVM+GREAY NP+ ++ +D ++ P
Sbjct: 187 LKSDFPQLTIAINGSLQTDAAVLEQLALVDGVMVGREAYHNPWWLTRWDELFFGAKP--G 244
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR + M+ Y+ ++ + + ++ RHMLGL + G+ +++Q+ S L
Sbjct: 245 TLTREQVEEEMVAYMEREAAAHGT-HWYAVARHMLGLRNGLPGARRWRQVWSDHRL 299
>gi|381150765|ref|ZP_09862634.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
gi|380882737|gb|EIC28614.1| tRNA dihydrouridine synthase A [Methylomicrobium album BG8]
Length = 312
Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 215/294 (73%), Gaps = 6/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDR+CR FHR IT+ + LYTEM TT A+L G+++ L F++ EHP+A Q+G ++P
Sbjct: 2 LDWTDRYCRFFHRLITKRALLYTEMITTGALLHGDRQRFLQFDSSEHPLALQLGGSDPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + +GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AMR++V I +TV
Sbjct: 62 LAACAKMAEDFGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMRNAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + F+GTV+ AGCRTFIVHAR A+LK L+PKQNR++P L+Y VY
Sbjct: 122 KSRIGIDDRDSYEELAHFIGTVADAGCRTFIVHARKAWLKGLSPKQNREVPPLRYEMVYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK+DFP L I++NGGI T ++ + L N +DGVM+GREAY NP++++ D + +P
Sbjct: 182 LKQDFPPLRIVLNGGITTLEQAEEALRNGVDGVMMGREAYHNPYILAEVDRRLF-GMPAD 240
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R +I+NR++ YI +QL ++SITRH+LGL G+ +++ LS+
Sbjct: 241 AVP-RSEIVNRLMPYIERQLAEG--VRLHSITRHILGLFHGEPGARSWRRHLSE 291
>gi|372269222|ref|ZP_09505270.1| tRNA-dihydrouridine synthase A [Alteromonas sp. S89]
Length = 311
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 209/293 (71%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ +DRHCR F R ++ + LYTEM TT AIL G+++ LDF+ EE P+A Q+G ++P+
Sbjct: 1 MDWSDRHCRYFWRLFSKQALLYTEMVTTGAILFGDQQSHLDFSVEEQPVALQLGGSDPQD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I ++WGY E+NLNCGCPS+RV+ G FGA LM +P LV++C+ AMR++V I +TV
Sbjct: 61 LARCAEIAEQWGYSELNLNCGCPSDRVKKGRFGACLMAEPDLVAECLGAMREAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ Y + FV + AG TFIVHAR A+L L+PK+NR+IP LKY+ VY
Sbjct: 121 KHRIGIDDMEDYPGLTRFVEAQARAGITTFIVHARKAWLNGLSPKENREIPPLKYDMVYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKD+PELEI++NGGI + +E HL +DGVMLGR AY+ P L+++ D + P
Sbjct: 181 LKKDYPELEIVLNGGINSIEECQHHLQLLDGVMLGRAAYQTPALLADVDAALFGGEPG-- 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PT ++ +M+ YI Q+L K +++ ITRHM+GL + + G+ +F++ LS+
Sbjct: 239 -PTPAQVVQQMLPYIEQEL--TKGQHLKHITRHMMGLFQGVPGARRFRRHLSE 288
>gi|332528538|ref|ZP_08404526.1| tRNA-dihydrouridine synthase A [Hylemonella gracilis ATCC 19624]
gi|332042049|gb|EGI78387.1| tRNA-dihydrouridine synthase A [Hylemonella gracilis ATCC 19624]
Length = 339
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 152/326 (46%), Positives = 212/326 (65%), Gaps = 25/326 (7%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR ++R + LYTEM TT A+L G+ L F+ EHP+A Q+G +EP
Sbjct: 2 IDWTDRHCRYFHRLLSRRARLYTEMITTGALLHGDVARHLRFDDAEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE----I 115
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+++ +
Sbjct: 62 LAACARLGEQWGYDEINLNCGCPSERVQRGAFGACLMAEPQLVADCVKAMRDALQNPERV 121
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVKHR+GID + YDFVRDFVGTV+ AGC TFIVHARNA+L+ L+PK+NR+IP L+Y
Sbjct: 122 PVTVKHRVGIDRVERYDFVRDFVGTVAEAGCTTFIVHARNAWLQGLSPKENREIPPLRYE 181
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-----------------IDGVMLGREAY 218
FV+ LK+DFP L+++INGG+ + ++ L +DG M+GREAY
Sbjct: 182 FVHRLKRDFPSLKVVINGGLTSDAQVLEQLQGADSPQAAADQAGGGPVPLDGAMIGREAY 241
Query: 219 KNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMK 278
NP+ ++++D Y+ TR DI RM+ Y+ ++ + I RHMLGL
Sbjct: 242 HNPWWLASWDRLYFGE--PGSAATREDIEERMVDYM-LRMQAEEGLGWYGIARHMLGLRH 298
Query: 279 NIKGSNKFKQILSKPNLLTIDNFQFF 304
+ G+ +++Q+ S L D Q
Sbjct: 299 GLPGARRWRQVWSDHRLKGEDPRQVM 324
>gi|254514697|ref|ZP_05126758.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
gi|219676940|gb|EED33305.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR5-3]
Length = 343
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 209/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ ++RHCR F R +++++ LYTEM TT A++ G+++ L FNAEE PIA Q+G + P
Sbjct: 31 MDWSNRHCRYFWRLLSQHARLYTEMVTTGALIHGDRQRFLQFNAEETPIALQLGGSNPDD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A + WGYDE+NLNCGCPS+RVQNG FGA LM +P LV D + AMR + EID+TV
Sbjct: 91 LARCAAWAEAWGYDEVNLNCGCPSDRVQNGAFGACLMAEPELVRDAVSAMRSACEIDVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + SY+ + FVGTV+ GC FIVHAR A+LK L+PK+NR++P L Y +VY
Sbjct: 151 KHRIGIDHMESYEELCHFVGTVADGGCSVFIVHARKAWLKGLSPKENREVPPLTYPWVYR 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I+INGGI++ + + HL +DGVMLGR AY NP++++ D + Q +
Sbjct: 211 LKRDFPALTIVINGGIESIDDCEPHLARVDGVMLGRSAYHNPWVLAEVDRRLFGEPQQPR 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R DII+ ++ Y+ ++L + +N ITRH+LGL + + G+ +++++LS+
Sbjct: 271 --CREDIIDALMPYVEKELASG--TRLNQITRHILGLYQEVPGAKRYRRLLSE 319
>gi|374620237|ref|ZP_09692771.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
gi|374303464|gb|EHQ57648.1| tRNA-U16,U17-dihydrouridine synthase [gamma proteobacterium HIMB55]
Length = 329
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/303 (50%), Positives = 208/303 (68%), Gaps = 13/303 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R++ +YTEM TT A++ G+ L FN EEHP+A Q+G + PK
Sbjct: 1 MDWTDRHCRYFWRLMSRHTRVYTEMVTTGALIHGDADRHLRFNEEEHPVALQLGGSSPKD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ +GYDEINLNCGCPS+RVQNG FGA LM + LV DC+ AM ++V+I +TV
Sbjct: 61 LAVSARMGADYGYDEINLNCGCPSDRVQNGAFGACLMREAELVRDCVSAMNEAVDIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GIDD NSYD VRDFVGTV+ G + FI HARNA+LK L+PK+NR++P LKY +VY
Sbjct: 121 KHRLGIDDDNSYDIVRDFVGTVAEGGSQVFIAHARNAWLKGLSPKENREVPPLKYEWVYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP--- 236
LK+DFP+L I+INGGI T +E HL ++DGVMLGRE Y+NP+ +S D + P
Sbjct: 181 LKRDFPDLTIVINGGITTLEECQAHLAHVDGVMLGREPYQNPWFLSAVDELLFQETPTGD 240
Query: 237 ------QYKIP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQI 289
Q P +R ++ Y+ + L+ +N + RH+LGL + G +F++I
Sbjct: 241 KSNTLKQSSSPLSRRATAEALMPYLEKVLSEG--GRLNHVLRHVLGLYQRQPGGKQFRRI 298
Query: 290 LSK 292
LS+
Sbjct: 299 LSE 301
>gi|383758492|ref|YP_005437477.1| tRNA-dihydrouridine synthase A DusA [Rubrivivax gelatinosus IL144]
gi|381379161|dbj|BAL95978.1| tRNA-dihydrouridine synthase A DusA [Rubrivivax gelatinosus IL144]
Length = 342
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +++++ LYTEM TT A+L G++ LDF EEHP+A Q+G +EP
Sbjct: 24 LDWTDRHCRHFHRLLSKHARLYTEMVTTGALLHGDQPRHLDFGDEEHPVALQLGGSEPSD 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V + +TV
Sbjct: 84 LAACAKLAERWGYDEVNLNCGCPSPRVQRGAFGACLMNEPALVADAVKAMRDAVSLPVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+ SY FVRDFVGTV++AGC FIVHARNA+L+ L+PK+NR IP L+Y +
Sbjct: 144 KHRIGLGKDESYAFVRDFVGTVAAAGCEVFIVHARNAWLEGLSPKENRDIPPLRYEVAHR 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP L I++NGGI + I L ++DGVM+GR AY P+ ++ +D ++ +
Sbjct: 204 LKAEFPALTIVVNGGIAGDEAIAAQLAHVDGVMVGRAAYHEPWTLATWDERFFGEPAPAQ 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+++ M+ Y+ +Q + RHMLGL G+ +++Q+ S
Sbjct: 264 DRAAVELA--MVRYMERQAAAG--VPWAHVARHMLGLWNGEAGARRWRQVWS 311
>gi|416893370|ref|ZP_11924558.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
gi|347813924|gb|EGY30576.1| tRNA-dihydrouridine synthase A [Aggregatibacter aphrophilus ATCC
33389]
Length = 327
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T QAI+ K LDF+A EHP+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTAQAIIHAKYDHLDFDAAEHPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+ +V+I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKADLVAECVQQMQSAVQIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ +FV TV AGC+ FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLYNFVQTVKQAGCQEFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ + D + P I
Sbjct: 199 KRDFPDLLISINGGIKTIEEIQRHLQHVDGVMVGREAYQNPSLLGHIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + M+ YI QL+ +N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 ITPRQAVESMLPYIESQLSQGVY--LNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|152987423|ref|YP_001347729.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PA7]
gi|150962581|gb|ABR84606.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PA7]
Length = 334
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 212/312 (67%), Gaps = 7/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L + EHP+A Q+G + P +
Sbjct: 24 MDWTDRHCRFFLRQLSRHALLYTEMVTTGALLHGDRQRFLRHDECEHPLALQLGGSVPAE 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAMRD+VEI +TV
Sbjct: 84 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMRDAVEIPVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY +RDFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 144 KHRIGINGRDSYAELRDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + + Q
Sbjct: 204 LKKDFPDLEIVLNGGIKTLEDCREHLRTFDGVMLGREAYHNPYLLAAVDSQLFGS--QVP 261
Query: 240 IPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS +
Sbjct: 262 PPSRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKSA 318
Query: 299 DNFQFFLNTLNI 310
D + F L +
Sbjct: 319 DPLRVFDQALEL 330
>gi|332525913|ref|ZP_08402054.1| tRNA-dihydrouridine synthase A [Rubrivivax benzoatilyticus JA2]
gi|332109464|gb|EGJ10387.1| tRNA-dihydrouridine synthase A [Rubrivivax benzoatilyticus JA2]
Length = 320
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 142/296 (47%), Positives = 199/296 (67%), Gaps = 5/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +T+++ LYTEM TT A+L G++ LDF EEHP+A Q+G +EP
Sbjct: 2 LDWTDRHCRHFHRLLTQHARLYTEMVTTGALLHGDQPRHLDFGDEEHPVALQLGGSEPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+D +KAMRD+V + +TV
Sbjct: 62 LAACAKLAERWGYDEVNLNCGCPSPRVQRGAFGACLMNEPALVADAVKAMRDAVSLPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+ SY FVRDFVG+V+ AGC FIVHARNA+L+ L+PK+NR IP L+Y +
Sbjct: 122 KHRIGLGKDESYAFVRDFVGSVAEAGCEVFIVHARNAWLEGLSPKENRDIPPLRYEVAHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP+L I++NGGI + I L ++DGVM+GR AY P+ +S +D ++ +
Sbjct: 182 LKTEFPQLTIVVNGGIAGDEAIAAQLAHVDGVMVGRAAYHEPWTLSTWDERFFGEPAPAQ 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
+++ M+ Y+ +Q + RHMLGL G+ +++Q+ S L
Sbjct: 242 DRAAVELA--MVRYMERQAAAG--VPWAHVARHMLGLWNGEPGARRWRQVWSDHRL 293
>gi|386286577|ref|ZP_10063765.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
gi|385280374|gb|EIF44298.1| tRNA-dihydrouridine synthase A [gamma proteobacterium BDW918]
Length = 327
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 213/293 (72%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ +DRHCR+F RQ++ ++ LYTEM TT A++ G+ K LD++ EHP+A Q+G ++P+
Sbjct: 16 LDWSDRHCRVFWRQLSHHAVLYTEMITTGALIHGDHKRHLDYSDIEHPVALQLGGSDPEA 75
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA S ++ ++W YDE+NLNCGCPS+RVQNGFFGA LM +P LV+DC+KAM+D+ ++ ITV
Sbjct: 76 LAISVRMAEQWHYDEVNLNCGCPSDRVQNGFFGACLMARPTLVADCVKAMKDAGDLPITV 135
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID+ Y +++FVG ++ AG IVHAR A+L+ L+PK+NR+IP L Y+ VY
Sbjct: 136 KHRIGIDEQEGYGPLQEFVGAIADAGTDAIIVHARKAWLQGLSPKENREIPPLNYDLVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEIIINGGI+T ++ L+Y+DG+M+GR AY+ P+L++ D ++Y K
Sbjct: 196 LKKDFPDLEIIINGGIQTLEDARSQLSYVDGIMMGRSAYQTPYLLAEVDEHFYQQAATGK 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR DII+ + YI +L +K +N +TRH+LGL G F++ +S+
Sbjct: 256 --TRRDIIHDFLPYIEAEL--SKGTRLNHMTRHILGLFNGQAGGKLFRRHISE 304
>gi|452878029|ref|ZP_21955266.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa VRFPA01]
gi|452185286|gb|EME12304.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa VRFPA01]
Length = 332
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 212/312 (67%), Gaps = 7/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L + EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRHDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAMRD+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMRDAVEIPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY +RDFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELRDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + + Q
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEDCREHLRTFDGVMLGREAYHNPYLLAAVDSQLFGS--QVP 259
Query: 240 IPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
P+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS +
Sbjct: 260 PPSRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKSA 316
Query: 299 DNFQFFLNTLNI 310
D + F L +
Sbjct: 317 DPLRVFDQALEL 328
>gi|407774714|ref|ZP_11122011.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
gi|407282196|gb|EKF07755.1| tRNA-dihydrouridine synthase A [Thalassospira profundimaris WP0211]
Length = 331
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 209/293 (71%), Gaps = 4/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQI+R++ LYTEM TT AIL G + L +N EHP+A Q+G ++P
Sbjct: 13 MDWTDRHDRYFLRQISRHTLLYTEMVTTGAILHGGVERHLRYNDAEHPVALQLGGSDPDN 72
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++ +I + YDEINLNCGCPS+RVQNG FGA LM P +V++C+K+M + + +TV
Sbjct: 73 LARACEIANDYAYDEINLNCGCPSDRVQNGAFGACLMATPDVVANCVKSMISASDAPVTV 132
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K+RIGIDD Y ++ F TV+ AGC+TFIVHAR A+LK L+PK+NR++P LKY VY
Sbjct: 133 KNRIGIDDQEDYPSLKRFTETVAEAGCKTFIVHARKAWLKGLSPKENREVPPLKYELVYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FPELEI+INGGIKT E D HL ++DGVM+GREAY+NP+++++ D +Y + K
Sbjct: 193 LKQEFPELEILINGGIKTLDETDAHLKHVDGVMIGREAYQNPYVLADVDRRFYGD--DAK 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++ M+ YI + L I +TRHMLGL + ++G+ ++++ LS+
Sbjct: 251 PLSRHQVVEAMLPYIEEHLKEEH-GTIGHVTRHMLGLFQQMRGAKQWRRYLSE 302
>gi|407790626|ref|ZP_11137719.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
gi|407203749|gb|EKE73734.1| tRNA-dihydrouridine synthase A [Gallaecimonas xiamenensis 3-C-1]
Length = 323
Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 202/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R+F RQ++R++ LYTEM TT AI+ K L F+ EHP+A Q+G + P L
Sbjct: 12 LDWTDRHYRVFARQLSRHALLYTEMVTTGAIIHGKGDYLAFSEAEHPVALQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAM+D+V I +TVK
Sbjct: 72 AHCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMAEPTLVADCVKAMKDAVSIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY F+ DFV T+S AGC TFIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 132 SRIGIDDMDSYPFLVDFVSTISEAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQL 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP L I INGGIKT E+ HL ++D VM+GREAY+NP+L++ D Y +
Sbjct: 192 KKDFPNLHIGINGGIKTLDEMQGHLAHVDSVMVGREAYQNPYLLAEVDAALYGV--DSAM 249
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++ M YI +L +N I+RHMLGL G ++++ LS+
Sbjct: 250 VSRRAVVEAMFPYIEAELAAG--ARLNHISRHMLGLFNGQTGGRRWRRYLSE 299
>gi|222111076|ref|YP_002553340.1| tRNA-dihydrouridine synthase a [Acidovorax ebreus TPSY]
gi|221730520|gb|ACM33340.1| TIM-barrel protein, yjbN family [Acidovorax ebreus TPSY]
Length = 351
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 203/296 (68%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++ LYTEM TT A+ G+ + L F+A EHP+A Q+G +EP
Sbjct: 18 MDWTDRHCRYLHRLLSRHTLLYTEMVTTGALAHGDVQRHLRFDAAEHPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V++ +TV
Sbjct: 78 LAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVQVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID Y FVRDFVG V+ AGCR FIVHARNA+LK L+PK+NR+IP L+Y+
Sbjct: 138 KHRIGIDQNEDYGFVRDFVGVVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYDVAAR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L I INGG +T + L +DGVM+GREAY NP+ ++ +D ++ P
Sbjct: 198 LKADFPQLTIAINGGFQTDAAVLEELARVDGVMVGREAYHNPWWLARWDEQFFGAAP--A 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
PTR + M+ Y+ ++ + + ++ RHMLGL + G+ +++Q+ S L
Sbjct: 256 APTREQVEEDMVAYMEREATAHGT-HWYAVARHMLGLRNGLPGARRWRQVWSDHRL 310
>gi|359798885|ref|ZP_09301454.1| tRNA-dihydrouridine synthase A [Achromobacter arsenitoxydans SY8]
gi|359363023|gb|EHK64751.1| tRNA-dihydrouridine synthase A [Achromobacter arsenitoxydans SY8]
Length = 326
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 205/308 (66%), Gaps = 6/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L GN LDF+ EHP+A Q+G +EP
Sbjct: 2 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLYGNVSRHLDFDEAEHPVALQLGGSEPDA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 62 LAQSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMQDAVDIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SYDFVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 122 KHRLGLDYDESYDFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVTQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ ++NGG+ + DGVMLGR A+ P ++S L + P +
Sbjct: 182 LKRDFPDCTFVLNGGLADSGQSVRAAEAFDGVMLGRAAWHTPRVLSEVSLQLW---PSVR 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M Y +Q+ K + +TR MLGL+ G+ +++++LS P LL +
Sbjct: 239 LPSDAQVVDAMTEYAARQV--AKGVPLRVMTRPMLGLVNGQSGARRWRRMLSDPALLAAN 296
Query: 300 NFQFFLNT 307
N + +
Sbjct: 297 NPELIYDA 304
>gi|254282686|ref|ZP_04957654.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
gi|219678889|gb|EED35238.1| tRNA-dihydrouridine synthase A [gamma proteobacterium NOR51-B]
Length = 311
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +TR + LYTEM TT A+L G+ L FN EHPIA Q+G + P++
Sbjct: 1 MDWTDRHCRYFWRLLTRRARLYTEMVTTGALLHGDVARHLQFNDCEHPIALQLGGSNPEE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + WGYDE+NLNCGCPS+RVQNG FGA LM + LV DC+ AM D+ + +TV
Sbjct: 61 LASCARMAEDWGYDEVNLNCGCPSDRVQNGRFGACLMAEAELVRDCVAAMCDASALPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID SY+ +RDFVGTV+S G R FIVHAR A+L+ L+PK+NR+IP L Y +VY
Sbjct: 121 KHRIGIDHQESYNELRDFVGTVASGGARVFIVHARKAWLQGLSPKENREIPPLNYPWVYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I++NGG+ + HL +DGVMLGR AY+NP+L+++ D + + P+ +
Sbjct: 181 LKQDFPHLTIVLNGGVTDIPACESHLGKVDGVMLGRAAYQNPWLLASVDQALFGDAPRGQ 240
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++ ++ YI ++L +N +TRH+LGL + I G +F++++S+
Sbjct: 241 --SRASVLEALMPYIDRELARG--GRLNHVTRHVLGLYQGIPGGKRFRRVISE 289
>gi|444918632|ref|ZP_21238696.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
gi|444709577|gb|ELW50585.1| tRNA dihydrouridine synthase A [Cystobacter fuscus DSM 2262]
Length = 358
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F R I++ + LYTEM TT AIL G+K LDF+ EEHP+A Q+G ++P +
Sbjct: 2 MDWTDRHDRYFLRLISKRTRLYTEMVTTGAILYGDKPRHLDFSQEEHPLALQLGGSDPAQ 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ +I ++WGYDE+NLN GCPS+RVQNG FGA LM KP LV+ C++AMR + + +TV
Sbjct: 62 LAECVRIAEQWGYDEVNLNVGCPSDRVQNGMFGACLMAKPDLVARCVEAMRGATRLPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GIDD++SY+ + FV TVS AGC TFIVHAR AFL+ L+PK+NR+IP L+Y +V
Sbjct: 122 KHRLGIDDLDSYELLTHFVRTVSGAGCDTFIVHARKAFLQGLSPKENREIPPLRYEWVRQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L + +NGG+K+ E HL + DGVM+GREAY+NP++++ D +
Sbjct: 182 LKTDFPHLTLSLNGGVKSLAEARAHLEWADGVMIGREAYQNPYMLALADSVIFGE--TAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR ++ + Y+ + L + ++ +TRH+LGL + G+ ++++LS+
Sbjct: 240 APTRRQVVESLQPYVEELLARGEY--LSRVTRHILGLFAGLPGARGWRRVLSE 290
>gi|406678525|ref|ZP_11085700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
gi|404621638|gb|EKB18504.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
Length = 328
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 216/308 (70%), Gaps = 4/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQTFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+PEL I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D + + +
Sbjct: 192 KQDYPELTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVFGQI--NAV 249
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 250 PSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGAG 307
Query: 301 FQFFLNTL 308
Q L+ +
Sbjct: 308 IQVVLDAM 315
>gi|333982800|ref|YP_004512010.1| hypothetical protein [Methylomonas methanica MC09]
gi|333806841|gb|AEF99510.1| TIM-barrel protein, yjbN family [Methylomonas methanica MC09]
Length = 323
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 207/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F+R ++R++ LYTEM TT AIL GN++ L FN EE P+A Q+G + P+
Sbjct: 15 LDWTDRHCRYFYRLLSRHAVLYTEMVTTGAILQGNQQRHLQFNPEEQPVALQLGGSHPQD 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ +++GYDE+NLN GCPS+RVQNG FGA LM +P LV+ C+ AMR +V I +TV
Sbjct: 75 LARCAELAEQYGYDEVNLNIGCPSDRVQNGRFGACLMAEPELVAACVAAMRQAVSIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+ +SY+ + F+ TV++ GC TFIVHAR A+L L+PKQNR IP L Y VY
Sbjct: 135 KSRIGIDERDSYEELTQFIATVAAGGCDTFIVHARKAWLSGLSPKQNRDIPPLCYEMVYR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPEL+IIINGGI + L ++DGVMLGRE Y NP+L+S D Y + Y
Sbjct: 195 LKHDFPELDIIINGGITSLDASLALLKHVDGVMLGREVYHNPYLLSEVDRCLYGD--DYP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR D+I M+ Y+RQQL + +N+I RH+LGL ++G+ +++ +S+
Sbjct: 253 QKTRQDVILAMLPYVRQQLQHG--VRLNNIARHLLGLFHGVEGARAWRRYISE 303
>gi|226945328|ref|YP_002800401.1| tRNA-dihydrouridine synthase A [Azotobacter vinelandii DJ]
gi|226720255|gb|ACO79426.1| Dihydrouridine synthase yjbN family protein [Azotobacter vinelandii
DJ]
Length = 336
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/293 (52%), Positives = 205/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F RQ++ ++ LYTEM TT A+L G+ + L EHP+A Q+G + P +
Sbjct: 26 LDWTDRHCRFFLRQLSYHALLYTEMVTTGALLHGDARRFLRHERMEHPLALQLGGSVPGE 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDEINLN GCPS+RVQN GA LM P V+DC+KAMRD+V I +TV
Sbjct: 86 LAACARLAEEAGYDEINLNVGCPSDRVQNNLIGACLMGDPARVADCVKAMRDAVTIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID +SY +RDFVG V AGCR+FIVHAR A L L+PK+NR+IP L+Y V
Sbjct: 146 KHRIGIDGRDSYGELRDFVGQVCEAGCRSFIVHARIAILAGLSPKENREIPPLRYEIVAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT +E LHL DGVM+GREAY NP+L++ D + S LP
Sbjct: 206 LKQDFPDLEIVLNGGIKTLEECRLHLRSFDGVMIGREAYHNPYLLAQVDRELFDSPLPAL 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+R + + R+ YI+Q LN ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 266 ---SRHEALKRLRPYIQQYLNEGGA--LHHITRHVLGLGQGFPGARRFRQLLS 313
>gi|423205254|ref|ZP_17191810.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
gi|404624337|gb|EKB21172.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC34]
Length = 328
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 218/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+PEL I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPELTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVFGQN---NA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
+ Q L+ +
Sbjct: 307 DIQVVLDAM 315
>gi|94986095|ref|YP_605459.1| tRNA-dihydrouridine synthase A [Deinococcus geothermalis DSM 11300]
gi|94556376|gb|ABF46290.1| tRNA-U16,U17-dihydrouridine synthase [Deinococcus geothermalis DSM
11300]
Length = 344
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +TR + LYTEM TT AIL G++ L F+ EHP+A Q+G ++P
Sbjct: 17 MDWTDRHCRAFHRTLTRRTLLYTEMVTTGAILHGDRARHLGFSPAEHPVALQLGGSDPAA 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I Q WGYDE+NLNCGCPS+RVQNG FGA LM P +V+ ++AMR + + +TV
Sbjct: 77 LAECARIAQDWGYDEVNLNCGCPSDRVQNGSFGACLMATPDVVARAVEAMRGATTLPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV+ AGC+TFIVHAR A+L L+PK+NR+IP L+Y V
Sbjct: 137 KHRIGIDDLDSYEHLTRFVRTVAEAGCQTFIVHARKAWLSGLSPKENREIPPLRYEVVRQ 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L +++NGG+ T HL + DGVM+GR AY++P+L++ D + +
Sbjct: 197 LKADFPHLTVVLNGGVLTLAAAQEHLAWADGVMVGRAAYQDPYLLAAADRDLFGE--DVT 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR + I + Y+ QL + ++ + RH LGL G+ +K+ LS+
Sbjct: 255 PPTRREAIEAFLPYVAAQLAEG--QPLHRMMRHTLGLFAGQPGARHWKRTLSE 305
>gi|117618436|ref|YP_858131.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559843|gb|ABK36791.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 328
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 218/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPDLTIAINGGVTSMEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVFGQN---NA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
+ Q L+ +
Sbjct: 307 DIQVVLDAM 315
>gi|390437556|ref|ZP_10226094.1| tRNA-dihydrouridine synthase A [Pantoea agglomerans IG1]
Length = 330
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 207/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 15 LDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVALQLGGSDPAAL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D +KAMRD V I +TVK
Sbjct: 75 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAVKAMRDVVSIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 135 TRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I +NGG+KT +E +HL ++DGVM+GREAY+NP +++ D + Q+
Sbjct: 195 LKRDFPQLTIALNGGVKTLEEAQIHLQHLDGVMMGREAYQNPGILAQVDQTLFGR--QHP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 253 AANPVEVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 303
>gi|440761201|ref|ZP_20940293.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
gi|436425131|gb|ELP22876.1| tRNA dihydrouridine synthase A [Pantoea agglomerans 299R]
Length = 330
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 15 LDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVALQLGGSDPAAL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 75 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAIKAMRDVVSIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 135 TRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q+
Sbjct: 195 LKRDFPHLTIALNGGVKTLEEAQTHLQHLDGVMMGREAYQNPGILAQVDQTLFGR--QHP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+D++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 253 AANPVDVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 303
>gi|330828271|ref|YP_004391223.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
gi|328803407|gb|AEB48606.1| tRNA-dihydrouridine synthase A [Aeromonas veronii B565]
Length = 328
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 218/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+PEL I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPELTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVFGQN---NA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
+ Q L+ +
Sbjct: 307 DIQVVLDAM 315
>gi|304398443|ref|ZP_07380316.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
gi|304353948|gb|EFM18322.1| TIM-barrel protein, yjbN family [Pantoea sp. aB]
Length = 330
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 15 LDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVALQLGGSDPAAL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 75 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAIKAMRDVVSIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 135 TRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q+
Sbjct: 195 LKRDFPHLTIALNGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDQTLFGR--QHP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+D++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 253 AANPVDVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 303
>gi|423198255|ref|ZP_17184838.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
gi|404630479|gb|EKB27156.1| tRNA-dihydrouridine synthase A [Aeromonas hydrophila SSU]
Length = 328
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 218/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDLVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPDLTIAINGGVTSLEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVFGQN---KA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
+ Q L+ +
Sbjct: 307 DIQVVLDAM 315
>gi|149907717|ref|ZP_01896464.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
gi|149809387|gb|EDM69316.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
Length = 330
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 154/295 (52%), Positives = 207/295 (70%), Gaps = 10/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ + L +N EEHP++ Q+G + P L
Sbjct: 21 LDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIHGRGDYLAYNKEEHPVSLQLGGSNPIDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+SAK+ Q+ GYDEINLN GCPS+RVQ+G FGA LM +P LV+DC+KAM+D V+I ITVK
Sbjct: 81 AQSAKLAQERGYDEINLNVGCPSDRVQSGKFGACLMAEPTLVADCVKAMQDVVDIPITVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ TV++ GC+ F +HAR A+L L+PK+NR+IP L Y VY++
Sbjct: 141 TRIGIDDQDSYEFLQTFIDTVAATGCKDFTLHARKAWLSGLSPKENREIPELNYQRVYDI 200
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGG+KT E LHL +DGVM+GREAY NPFL+S D Y + I
Sbjct: 201 KQDFPALFIAINGGVKTLAETQLHLGNVDGVMMGREAYHNPFLLSQIDELVYGG--EKSI 258
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSIT---RHMLGLMKNIKGSNKFKQILSK 292
+R D M+ YI +N I+N S+T RHMLGL + G+ +K+ LS+
Sbjct: 259 HSRHDYAEMMLPYI-----DNHIRNGGSLTHIYRHMLGLFLGLPGARAWKRHLSE 308
>gi|311105398|ref|YP_003978251.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans A8]
gi|310760087|gb|ADP15536.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans A8]
Length = 326
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 203/308 (65%), Gaps = 6/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L GN + LDF+ EHP+A Q+G +EP
Sbjct: 2 IDVTDRHCRFFHRLLAPRARLYTEMITTGALLHGNVERHLDFDEAEHPVALQLGGSEPDA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA++ +KWGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 62 LAHSARLGKKWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMQDAVDIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY+FVRDFVG V GCR FI HARNA LK L PK NR+IP L+Y V
Sbjct: 122 KHRLGLDYDESYEFVRDFVGKVYDTGCRVFIAHARNAVLKGLTPKDNREIPPLRYEVVRQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ ++NGG+ + DGVMLGR A+ P ++S L + P +
Sbjct: 182 LKRDFPDCTFVLNGGLADAGQSVRAAGDFDGVMLGRAAWHTPRVLSEVSLQLW---PSLR 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M+ Y +Q+ + +TR MLGL+ G+ +++++LS P LL +
Sbjct: 239 LPSDAQVVDAMMEYAARQVAVG--VPLRVMTRPMLGLVNGQSGARRWRRMLSDPALLAAN 296
Query: 300 NFQFFLNT 307
N + +
Sbjct: 297 NPELIYDA 304
>gi|421482941|ref|ZP_15930520.1| tRNA-dihydrouridine synthase A [Achromobacter piechaudii HLE]
gi|400198745|gb|EJO31702.1| tRNA-dihydrouridine synthase A [Achromobacter piechaudii HLE]
Length = 326
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 205/308 (66%), Gaps = 6/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+ EHP+A Q+G +EP
Sbjct: 2 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGSVSRHLDFDEAEHPVALQLGGSEPDA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V+I +TV
Sbjct: 62 LAQSAKLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMRDAVDIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 122 KHRLGLDYEESYAFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVKQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+ ++NGG+ ++ + DGVMLGR A+ P ++S L + P +
Sbjct: 182 LKVDFPDCTFVLNGGLADAEQSVRAADEFDGVMLGRAAWHTPRVLSEVSLQLW---PSVR 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M Y +Q+ K + +TR MLGL+ G+ +++++LS P LL +
Sbjct: 239 LPSDAQVVDAMTEYAARQV--AKGVPLRVMTRPMLGLVNGQSGARRWRRMLSDPALLAAN 296
Query: 300 NFQFFLNT 307
N + +
Sbjct: 297 NPELIYDA 304
>gi|395233275|ref|ZP_10411517.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
gi|394732321|gb|EJF32016.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
Length = 334
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/293 (51%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHPIA Q+G ++P+ L
Sbjct: 21 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPIALQLGGSDPQAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+GTV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFIGTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIKT +E HL ++DGVM+GREAY+NP L++ D +
Sbjct: 201 LKRDFPQLTMAINGGIKTLEEAKTHLEHLDGVMVGREAYQNPGLLTTVDREIFGADVADS 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELANGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|315633448|ref|ZP_07888738.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
gi|315477490|gb|EFU68232.1| tRNA-dihydrouridine synthase A [Aggregatibacter segnis ATCC 33393]
Length = 327
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 204/293 (69%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDTAENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ Q+ GY EINLN GCPS+RVQNG FGA LM LV++C++ M+ +V I +TVK
Sbjct: 79 QHCAQLAQQRGYQEINLNVGCPSDRVQNGMFGACLMANAELVAECVQQMQSAVHIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DFV V AGC+ FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFVQKVHQAGCQEFIVHARKAWLSGLSPKQNREIPPLNYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ + D + +N P
Sbjct: 199 KQDFPHLLISINGGIKTTEEMQQHLKYVDGVMVGREAYQNPALLGHIDHTLFDANAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + M YI QQL+ +N I RHMLG ++ KG+ ++++ LS+
Sbjct: 256 IITPRQAVENMFPYIEQQLSQGVY--LNHIVRHMLGAFQHCKGARQWRRYLSE 306
>gi|334703229|ref|ZP_08519095.1| tRNA-dihydrouridine synthase A [Aeromonas caviae Ae398]
Length = 328
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 218/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHP+A Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPLALQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A++ ++ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCARLAEERGYDEVNLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDEQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPDLTIAINGGVTSLEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVFGEN---RA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
+ Q L+ +
Sbjct: 307 DIQVVLDAM 315
>gi|336125336|ref|YP_004567384.1| NIFR3-like protein [Vibrio anguillarum 775]
gi|335343059|gb|AEH34342.1| NIFR3-like protein [Vibrio anguillarum 775]
Length = 326
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNPQDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q++GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 73 AHCAKLAQQYGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKSVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD++SY+F+ DF+ VS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 133 TRIGIDDMDSYEFLTDFISLVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDFP L I +NGG+KT E+ HL ++DGVM+GREAY++P+L++ D + + P
Sbjct: 193 LKKDFPHLVIAVNGGVKTLAEVSEHLQHLDGVMIGREAYQSPYLLAEVDQTIFGMDTP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R II M YI +QL + ITRHMLG+ +N+ G+ ++++ +S+
Sbjct: 251 -IKKRSQIIEEMFPYIERQLAQGSY--LGHITRHMLGMFQNMPGARQWRRYISE 301
>gi|403059923|ref|YP_006648140.1| yjbN family TIM-barrel protein [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807249|gb|AFR04887.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 340
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G ++P+ L
Sbjct: 30 LDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPQAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGV--DTA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++ M YI +L+ ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 TPDLAGVVRAMYPYIEHELSGG--ASLGHITRHMLGMFQGIPGARQWRRYLSE 318
>gi|227112414|ref|ZP_03826070.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 340
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G ++P+ L
Sbjct: 30 LDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPQAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCDFIQTVAERGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGI--DAA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++ M YI ++L+ ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 TPDLAGVVRAMYPYIERELSGG--ASLGHITRHMLGMFQGIPGARQWRRYLSE 318
>gi|411012138|ref|ZP_11388467.1| tRNA-dihydrouridine synthase A [Aeromonas aquariorum AAK1]
Length = 318
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 218/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPTDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 62 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDLVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 122 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+P+L I INGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 182 KQDYPDLTIAINGGVTSLEQTLEHLQHLDGVMMGREAYQNPYILAQVDNLVFGQN---NA 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 239 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 296
Query: 300 NFQFFLNTL 308
+ Q L+ +
Sbjct: 297 DIQVVLDAM 305
>gi|421494448|ref|ZP_15941796.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455737888|ref|YP_007504154.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
gi|400191310|gb|EJO24458.1| DUSA [Morganella morganii subsp. morganii KT]
gi|455419451|gb|AGG29781.1| tRNA dihydrouridine synthase A [Morganella morganii subsp. morganii
KT]
Length = 348
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR+++R++ LYTEM TT AIL K L +N EHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRKLSRHALLYTEMVTTGAILFGKGDYLAYNEAEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+ AMRD +I +TVK
Sbjct: 94 AQCAKIAQERGYDEINLNVGCPSDRVQNGMFGACLMGNASLVADCVAAMRDVTDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC F++HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFVGTVAERGGCEMFVIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP L + +NGGIKT +E HL Y+DGVM+GREAY+NP +++ D + + LP
Sbjct: 214 LKKDFPHLTMALNGGIKTLEEAKTHLQYMDGVMVGREAYQNPSILAQVDNALFDAALP-- 271
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI +L + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 272 -VTDTVAAVEAMYPYIEAELATGTY--LGHITRHMLGIFQGIPGARQWRRHLSE 322
>gi|293604638|ref|ZP_06687040.1| tRNA dihydrouridine synthase A [Achromobacter piechaudii ATCC
43553]
gi|292816969|gb|EFF76048.1| tRNA dihydrouridine synthase A [Achromobacter piechaudii ATCC
43553]
Length = 326
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/308 (47%), Positives = 205/308 (66%), Gaps = 6/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+ GN LDF+ EHP+A Q+G +EP
Sbjct: 2 IDVTDRHCRFFHRLLAPRARLYTEMITTGALQHGNIPRHLDFDEAEHPVALQLGGSEPDA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 62 LAQSAKLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPALVADCMKAMQDAVDIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D NSY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 122 KHRLGLDYENSYSFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVKQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ ++NGG+ + + DGVMLGR A+ P ++S L + P +
Sbjct: 182 LKQDFPDCTFVLNGGLADADQSVSAADEFDGVMLGRAAWHTPRVLSEVSLRLW---PSVR 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M Y +Q+ K + +TR MLGL+ G+ +++++LS P LL +
Sbjct: 239 LPSDAQVVDAMTEYAARQV--AKGVPLRVMTRPMLGLVNGQSGARRWRRMLSDPALLAAN 296
Query: 300 NFQFFLNT 307
N + +
Sbjct: 297 NPELIYDA 304
>gi|310818800|ref|YP_003951158.1| tRNA-dihydrouridine synthase a [Stigmatella aurantiaca DW4/3-1]
gi|309391872|gb|ADO69331.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 344
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 143/295 (48%), Positives = 204/295 (69%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQ++R++ LYTEM TT A+L G++ L F EHP+A Q+G +EP
Sbjct: 15 MDWTDRHCRFFHRQLSRHTLLYTEMLTTGAVLHGDRDRLLGFEPAEHPVALQLGGSEPAA 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 75 LAEAARIGEAWGYDEINLNVGCPSDRVQSGRFGACLMAEPELVARLVAAMREAVRIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI IDD+ + + FV +S+ GC FIVHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 135 KSRIAIDDMEEWPTLERFVRLISAEGCSRFIVHARKAWLQGLSPKENRDIPPLRYELVYR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
LK +FP L+I INGGIKT + HL ++DGVM+GR AY+NP+L++ D + S P+
Sbjct: 195 LKAEFPSLDISINGGIKTLEAAAEHLRHVDGVMIGRAAYENPYLLAEADSRLFGASEAPR 254
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R D++ M+ Y+ + ++ +N+ITRHMLGL + + G+ +++ LS+
Sbjct: 255 ----DRHDVVEAMLPYM--EARRSQGAPLNAITRHMLGLFQGLPGARAWRRHLSE 303
>gi|381406043|ref|ZP_09930727.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
gi|380739242|gb|EIC00306.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
Length = 330
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 15 LDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSDAEHPVALQLGGSDPAAL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+D +KAMRD V I +TVK
Sbjct: 75 AQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEATLVADAVKAMRDVVSIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 135 TRIGIDELDSYAFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q+
Sbjct: 195 LKRDFPHLTIALNGGVKTLEEAQAHLEHLDGVMMGREAYQNPGILAQVDQQLFGR--QHP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 253 AANPVEVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 303
>gi|308188956|ref|YP_003933087.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
gi|308059466|gb|ADO11638.1| tRNA-dihydrouridine synthase A [Pantoea vagans C9-1]
Length = 330
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 15 LDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVALQLGGSDPAAL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 75 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAIKAMRDVVSIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 135 TRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q+
Sbjct: 195 LKRDFPHLTIALNGGVKTLEEAQTHLQHLDGVMMGREAYQNPGILAQVDQTLFGR--QHP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 253 AANPVEVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 303
>gi|115372138|ref|ZP_01459449.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
gi|115370840|gb|EAU69764.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 330
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 143/295 (48%), Positives = 204/295 (69%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQ++R++ LYTEM TT A+L G++ L F EHP+A Q+G +EP
Sbjct: 1 MDWTDRHCRFFHRQLSRHTLLYTEMLTTGAVLHGDRDRLLGFEPAEHPVALQLGGSEPAA 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 61 LAEAARIGEAWGYDEINLNVGCPSDRVQSGRFGACLMAEPELVARLVAAMREAVRIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI IDD+ + + FV +S+ GC FIVHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 121 KSRIAIDDMEEWPTLERFVRLISAEGCSRFIVHARKAWLQGLSPKENRDIPPLRYELVYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
LK +FP L+I INGGIKT + HL ++DGVM+GR AY+NP+L++ D + S P+
Sbjct: 181 LKAEFPSLDISINGGIKTLEAAAEHLRHVDGVMIGRAAYENPYLLAEADSRLFGASEAPR 240
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R D++ M+ Y+ + ++ +N+ITRHMLGL + + G+ +++ LS+
Sbjct: 241 ----DRHDVVEAMLPYM--EARRSQGAPLNAITRHMLGLFQGLPGARAWRRHLSE 289
>gi|423201194|ref|ZP_17187774.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
gi|404617766|gb|EKB14700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER39]
Length = 328
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 217/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+P+L I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPDLTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVFGQN---NA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
Q L+ +
Sbjct: 307 GIQVVLDAM 315
>gi|410638177|ref|ZP_11348741.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
gi|410142097|dbj|GAC15946.1| tRNA-dihydrouridine synthase A [Glaciecola lipolytica E3]
Length = 345
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 208/292 (71%), Gaps = 3/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN +EHP+A Q+G ++P +
Sbjct: 18 LDWTDKHCRYFLRQISQHALLYTEMVTTGAIIFGKGDYLAFNHQEHPVALQLGGSDPTDM 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+ CIK+M+ ++I +TVK
Sbjct: 78 ARCAVLAQQRGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAQCIKSMQAEIDIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++ Y+ + F+ TV+ AGC TFIVHAR A+LK L+PK+NR IP L Y VY+L
Sbjct: 138 SRIGIDEMDEYEDLTRFITTVADAGCDTFIVHARKAWLKGLSPKENRDIPPLMYERVYHL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+ FP+L I INGG+KT ++ LHL YIDGVM+GRE Y NP+++++ D +Y + +K+
Sbjct: 198 KEQFPDLHISINGGVKTLDDVALHLKYIDGVMIGREVYSNPYILADVDKRFYGD--NHKV 255
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR D++ MI Y + QL + I I RHMLGL + G+ +++ LS+
Sbjct: 256 PTRHDVVESMIEYAKAQLELPHTR-IWHIARHMLGLFQGQPGARIWRRYLSQ 306
>gi|192359553|ref|YP_001981977.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
gi|190685718|gb|ACE83396.1| tRNA-dihydrouridine synthase A [Cellvibrio japonicus Ueda107]
Length = 341
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M + CR F R +T+ + LY+EM TT A+L G++K LD+NA EHP+A Q+G ++P+
Sbjct: 23 MEWSTSDCRTFWRILTQRAVLYSEMVTTGALLYGDRKRFLDYNACEHPLALQLGGSDPRA 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I + WGYDE+NLNCGCPS+RVQNG GA LM +P LV++CI AM+ +V I +TV
Sbjct: 83 LAECARIAEGWGYDEVNLNCGCPSDRVQNGMIGACLMAEPQLVAECIAAMQQAVSIPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++ Y+ + FV T+++ GC TFIVHAR A+LK L+PK+NR+IP L+Y+ VY
Sbjct: 143 KHRIGIDDMDDYEGLETFVRTIAATGCNTFIVHARKAWLKGLSPKENREIPPLQYDKVYQ 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L IIINGGI T ++ L ++DGVM+GREAY NP+L++ D Y
Sbjct: 203 LKQDFPHLNIIINGGITTLEQSQALLEHVDGVMVGREAYSNPYLLAQVDQTLYGE--SRP 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + I Y +QL K +N +TRH+LGL + G+ +F++++S+
Sbjct: 261 VISRDQVTQAFIAYCEEQL--AKGARLNHLTRHILGLYQGQPGARQFRRVISE 311
>gi|417839195|ref|ZP_12485394.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
gi|341954425|gb|EGT80906.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19107]
Length = 329
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 206/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 TYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPSLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PSAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T +++ M+ YI QQLN ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEVVQSMLPYIEQQLNQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|441506422|ref|ZP_20988393.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
gi|441425888|gb|ELR63379.1| tRNA dihydrouridine synthase A [Photobacterium sp. AK15]
Length = 346
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 210/294 (71%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ + LYTEM TT AI+ K L +N EEHP+ Q+G + P +L
Sbjct: 33 LDWTDRHCRYFHRQLSEHVQLYTEMVTTGAIIHGKADYLAYNEEEHPLVLQLGGSNPAEL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM + LV+ C+ AMR+ V+I ++VK
Sbjct: 93 AQCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMGEAELVAQCVAAMREVVDIPVSVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+GTVS GC F +HAR A+L+ L+PK+NR+IP L Y VY
Sbjct: 153 TRIGIDEQDSYQFLTDFIGTVSEKGGCSDFTIHARKAWLQGLSPKENREIPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L + INGG+KT +E++ HL ++DGVM+GREAY+NP++M++ D + SN P
Sbjct: 213 LKKDFAHLTMAINGGVKTMEEVEAHLEHLDGVMVGREAYQNPYMMADLDQRLFGSNKP-- 270
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +++ M YI ++L K +N I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 271 -VKKRREVVEAMFPYIEREL--AKGTYLNHISRHMLGLFQNMPGARQWRRHISE 321
>gi|386815146|ref|ZP_10102364.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
gi|386419722|gb|EIJ33557.1| tRNA-U16,U17-dihydrouridine synthase [Thiothrix nivea DSM 5205]
Length = 328
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 209/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +T+ + LYTEM T AIL G++ L F+ EHP+A Q+G +EP +
Sbjct: 14 LDWTDRHCRYFHRLLTKQAVLYTEMVTVGAILHGDRDRHLRFDVAEHPVALQLGGSEPAE 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A+ A+I + +GYDE+N+N GCPS RVQ G FGA LM +P L+++C+ AM+ +V I +TV
Sbjct: 74 MAECARIAEDYGYDEVNINVGCPSERVQKGAFGACLMAEPQLIAECVAAMQAAVSIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K+RIGID+ Y +R FV TVS AGC+TFIVHAR A+LK L+PK+NR+IP L+Y VY
Sbjct: 134 KNRIGIDEQEDYAGLRQFVSTVSEAGCQTFIVHARKAWLKGLSPKENREIPPLRYELVYQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+LEIIINGGI T ++ HL ++DGVM+GREAY NP+L++ DL Y +
Sbjct: 194 LKQEFPDLEIIINGGITTLEQCQQHLRHVDGVMVGREAYHNPWLLAQVDLVLYGTGTSFH 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R ++ ++ Y++ QL+ +N I+RH+LGL + + G+ +++++S+
Sbjct: 254 --NRKAVLAALLPYVQLQLDAG--VPLNHISRHILGLFQGMPGARSWRRLISE 302
>gi|372275615|ref|ZP_09511651.1| tRNA-dihydrouridine synthase A [Pantoea sp. SL1_M5]
Length = 330
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 15 LDWTDRHCRYFHRQLTGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPVALQLGGSDPAAL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D +KAMRD V I +TVK
Sbjct: 75 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEANLVADAVKAMRDVVSIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ DF+GTV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 135 TRIGIDELDSYEFLTDFIGTVAGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I +NGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q+
Sbjct: 195 LKRDFPQLTIALNGGVKTLEEALTHLQHLDGVMMGREAYQNPGILAQVDQTLFGR--QHP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 253 AANPVEVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 303
>gi|423211040|ref|ZP_17197593.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
gi|404614042|gb|EKB11046.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AER397]
Length = 328
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 217/309 (70%), Gaps = 6/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPI+ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMSRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPISLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+N+N GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 ARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQAFIEQVRDAGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQYK 239
K+D+P+L I +NGG+ + ++ HL ++DGVM+GREAY+NP++++ D L + N
Sbjct: 192 KQDYPKLTIALNGGVTSMEQTLEHLQHVDGVMMGREAYQNPYILAQVDNLVFGQN---NA 248
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+R +++ M+ YI Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 249 VPSRHEVVRMMLPYIEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGA 306
Query: 300 NFQFFLNTL 308
Q L+ +
Sbjct: 307 GIQVVLDAM 315
>gi|398796281|ref|ZP_10555894.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
gi|398203746|gb|EJM90563.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
Length = 332
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLSGDTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 76 AQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGDAALVADCIKAMRDVVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+GTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDEQDSYEFLCDFIGTVAQQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT +E LHL ++DGVM+GREAY+NP +++ D +
Sbjct: 196 LKRDFPALTMAINGGIKTLEEAKLHLQHMDGVMMGREAYQNPGILAQVDRELFGRDTPRV 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--VAVVRSMYPYIEAEL--SKGMYLGHVTRHMLGLFQGIPGARQWRRYLSE 304
>gi|90416108|ref|ZP_01224041.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
gi|90332482|gb|EAS47679.1| NifR3/Smm1 family protein [gamma proteobacterium HTCC2207]
Length = 322
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 210/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F R I++++ LYTEM TT AI+ G+ + L +A EHP+A Q+G + P
Sbjct: 12 LDWTDRHCRYFLRLISQHTMLYTEMLTTGAIIHGDSDYHLQMDAFEHPVALQLGGSSPAD 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA + K+ ++ Y EINLNCGCPS+RVQNG FGA++M + ++C+ AMR++V++ ITV
Sbjct: 72 LATACKMAAQYDYAEINLNCGCPSDRVQNGMFGAVMMKDAEITANCVSAMREAVDLPITV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D+ +SY+F+RDFVG V+ +GC F+VHAR A+LK L+PKQNR+IP L Y+ VY
Sbjct: 132 KHRIGVDEYDSYEFLRDFVGRVTESGCEVFLVHARKAWLKGLSPKQNREIPELNYDRVYR 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEIIINGG+ T ++ HL ++DGVM+GRE Y NP+L+++ D + Y +
Sbjct: 192 LKKDFPQLEIIINGGVTTLEQSKEHLQHLDGVMVGREVYSNPYLLASVDQDIYG--ASHG 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ TR I + Y +L +K +N++TRH+LGL + G+ +F++ +S+
Sbjct: 250 VKTRRQIAEEFLQYADNEL--SKGTKLNAMTRHILGLFHGMPGARQFRRHISE 300
>gi|344943243|ref|ZP_08782530.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
gi|344260530|gb|EGW20802.1| TIM-barrel protein, yjbN family [Methylobacter tundripaludum SV96]
Length = 331
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR I+++++LYTEM TT A++ G+ L F+A E P+AFQ+G + P++
Sbjct: 21 LDWTDRHCRYFHRLISQHAFLYTEMVTTGALIHGDHHRFLQFSAAERPVAFQLGGSNPRE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+I+ +GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM +V I +TV
Sbjct: 81 LAICAKMIEDYGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMAQAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+ +SY+ + FV TV+ AGC TFI+HAR A+L L+PKQNR +P L+Y+ Y
Sbjct: 141 KSRIGIDERDSYEELVHFVSTVADAGCETFIIHARKAWLSGLSPKQNRDVPPLRYDVAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP+LEII+NGGI T + + L ++DGVM+GREAY NP+L++ D +Y + +
Sbjct: 201 IKQDFPQLEIILNGGITTLDQAEAVLAHVDGVMVGREAYHNPYLLAEVDRRFYGESKEPR 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R I++ +I YI+QQL N +N+I+RH+LGL G+ +++ LS+
Sbjct: 261 --SREMIMDLLIPYIQQQLELNDGVRLNNISRHILGLFHGEPGARGWRRHLSE 311
>gi|421498959|ref|ZP_15946026.1| dusA [Aeromonas media WS]
gi|407181999|gb|EKE55989.1| dusA [Aeromonas media WS]
Length = 331
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 214/308 (69%), Gaps = 4/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +EHP+A Q+G + P L
Sbjct: 15 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQEHPLALQLGGSNPADL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A++ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAMRD V I +TVK
Sbjct: 75 ARCARLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVNIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F++ F+ V AGC TFIVHAR A+L L+PK+NR+IP L Y VY +
Sbjct: 135 TRIGIDEQDSYEFLQAFIEQVRDAGCETFIVHARKAWLSGLSPKENREIPPLDYPRVYQV 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+PEL I +NGG+ + ++ HL +DGVM+GREAY+NP++++ D + ++
Sbjct: 195 KQDYPELTIALNGGVNSLEQTLEHLQQVDGVMMGREAYQNPYILAEVDNRVFGL--GGEV 252
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
P+R +++ M+ Y+ Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 253 PSRHEVVRMMLPYMEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKPGAG 310
Query: 301 FQFFLNTL 308
Q L+ +
Sbjct: 311 IQVVLDAM 318
>gi|227326002|ref|ZP_03830026.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 340
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G ++P+ L
Sbjct: 30 LDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPQAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCDFIQTVAERGECDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTLAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGI--DAA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++ M YI ++L++ ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 TPDLAGVVRAMYPYIERELSSG--ASLGHITRHMLGMFQGIPGARQWRRYLSE 318
>gi|419838647|ref|ZP_14362070.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
gi|386910237|gb|EIJ74896.1| tRNA dihydrouridine synthase A [Haemophilus haemolyticus HK386]
Length = 329
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 207/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L I INGGIKT +EI HL Y+DGVM+GREAY+NP L+ D ++ P I
Sbjct: 199 KRDFPQLTIAINGGIKTIEEIKQHLQYVDGVMVGREAYQNPSLLGQIDQALFA--PNAAI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|417851442|ref|ZP_12497187.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219514|gb|EGP05163.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 327
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPTQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQLGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLRMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|303256981|ref|ZP_07342995.1| tRNA-dihydrouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|330999169|ref|ZP_08322888.1| tRNA dihydrouridine synthase A [Parasutterella excrementihominis
YIT 11859]
gi|302860472|gb|EFL83549.1| tRNA-dihydrouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|329575369|gb|EGG56913.1| tRNA dihydrouridine synthase A [Parasutterella excrementihominis
YIT 11859]
Length = 343
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 209/305 (68%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++LTDRHCR FHR ++ + LYTEM TT A++ G+ H LDF+ EH +A Q+G ++PK
Sbjct: 19 LDLTDRHCRYFHRLLSHRARLYTEMVTTGALVHGDVPHHLDFSEAEHRVALQLGGSDPKD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+ + +T+
Sbjct: 79 LAHGAKLAQQWGYDEVNLNCGCPSERVQKGSFGACLMAEPGLVADCVKAMQDATHLPVTI 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GID N Y FVRDFVGT+ +AG R FIVHARNA+LK L+PK+NR+IP L+ VY
Sbjct: 139 KHRVGIDANNDYGFVRDFVGTLFNAGVRVFIVHARNAWLKGLSPKENREIPPLRREVVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFPE I+ING ++ E + L ++DGVMLGR AY P+L+++ D Y++ ++
Sbjct: 199 LKKDFPEAIIVINGALQDLGECEAELKHVDGVMLGRAAYYTPWLLTDVDARLYND--EHA 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
TR +I+ M Y+R ++ ++ + RHM GL+ + G+ +++ LS L+
Sbjct: 257 PVTRDRVIDAMEEYVRFIKPDD--HSLRACCRHMHGLLTGLAGAKVWRRTLSDTALIREQ 314
Query: 300 NFQFF 304
F
Sbjct: 315 GADIF 319
>gi|308125855|ref|ZP_07663540.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|433658796|ref|YP_007276175.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
gi|308113305|gb|EFO50845.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus K5030]
gi|432509484|gb|AGB11001.1| tRNA dihydrouridine synthase A [Vibrio parahaemolyticus BB22OP]
Length = 315
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 2 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V++ +TVK
Sbjct: 62 AKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 182 LKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQNMPGARQWRRHISE 290
>gi|121594416|ref|YP_986312.1| tRNA-dihydrouridine synthase A [Acidovorax sp. JS42]
gi|120606496|gb|ABM42236.1| tRNA-U16,U17-dihydrouridine synthase [Acidovorax sp. JS42]
Length = 351
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/296 (49%), Positives = 202/296 (68%), Gaps = 4/296 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R++ LYTEM TT A+ G+ + L F+A EHP+A Q+G +EP
Sbjct: 18 MDWTDRHCRYLHRLLSRHTLLYTEMVTTGALAHGDVQRHLRFDAAEHPVALQLGGSEPTD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM D V++ +TV
Sbjct: 78 LAHCARLGEQWGYDEINLNCGCPSERVQRGAFGACLMNEPQLVADCVKAMVDVVQVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID Y FVRDFVG V+ AGCR FIVHARNA+LK L+PK+NR+IP L+Y+
Sbjct: 138 KHRIGIDQNEDYGFVRDFVGVVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYDVAAR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L I INGG +T + L +DGVM+GREAY NP+ ++ +D ++ P
Sbjct: 198 LKADFPQLTIAINGGFQTDAAVLQELARVDGVMVGREAYHNPWWLARWDEQFFGAAPAAL 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
TR + M+ Y+ ++ + + ++ RHMLGL + G+ +++Q+ S L
Sbjct: 258 --TREQVEEDMVAYMEREATAHGT-HWYAVARHMLGLRNGLPGARRWRQVWSDHRL 310
>gi|409394966|ref|ZP_11246092.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409395931|ref|ZP_11246956.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409119430|gb|EKM95813.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
gi|409120335|gb|EKM96684.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Chol1]
Length = 336
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 204/305 (66%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+ L ++A EHP+A Q+G + P +
Sbjct: 26 MDWTDRHCRYFLRQLSRHALLYTEMVTTGALIHGDAARYLRYDACEHPLALQLGGSVPAE 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRDSV +++TV
Sbjct: 86 LAACVKMAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPSLVADCVKAMRDSVGLEVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEII+NGGIKT E + HL+ DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKRDFPDLEIILNGGIKTLDECEAHLHTFDGVMLGREAYHNPYLLAQVDQRLFGS--SAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+ +R + M YI Q L + ++ +TRH+LGL G+ +F+Q+LS D
Sbjct: 264 VISRAQALRAMRPYIEQHLASG--GTMHHVTRHVLGLGSGFPGARRFRQMLSADIHKATD 321
Query: 300 NFQFF 304
F
Sbjct: 322 PLALF 326
>gi|451977713|ref|ZP_21927782.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
gi|451929428|gb|EMD77176.1| tRNA dihydrouridine synthase A [Vibrio alginolyticus E0666]
Length = 315
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 206/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 2 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNKEEHPLALQLGGSNPEDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM +P LVSDC+ AM+D V+I +TVK
Sbjct: 62 AKCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVSDCVAAMKDVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 182 LKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 240 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 290
>gi|28899501|ref|NP_799106.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus RIMD
2210633]
gi|260879420|ref|ZP_05891775.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|260894695|ref|ZP_05903191.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|260902033|ref|ZP_05910428.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
gi|38604768|sp|Q87L85.1|DUSA_VIBPA RecName: Full=tRNA-dihydrouridine synthase A
gi|28807737|dbj|BAC60990.1| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087465|gb|EFO37160.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus Peru-466]
gi|308089701|gb|EFO39396.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AN-5034]
gi|308109416|gb|EFO46956.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ4037]
Length = 326
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V++ +TVK
Sbjct: 73 AKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQNMPGARQWRRHISE 301
>gi|383311265|ref|YP_005364075.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835284|ref|YP_006240601.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
gi|380872537|gb|AFF24904.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. HN06]
gi|385201987|gb|AFI46842.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. 3480]
Length = 327
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|418362882|ref|ZP_12963500.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|356685888|gb|EHI50507.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 328
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 213/308 (69%), Gaps = 4/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +E P++ Q+G + P L
Sbjct: 12 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQERPVSLQLGGSNPADL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 72 AHCAKLARERGYDEINLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+P++NR+IP L Y VY +
Sbjct: 132 TRIGIDDQDSYEFLQTFIEQVRDAGCDTFIVHARKAWLSGLSPRENREIPPLDYPRVYRV 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+PEL I +NGG+ + ++ HL +DGVM+GREAY+NP++++ D + + I
Sbjct: 192 KQDYPELTIALNGGVTSLEQTLEHLQQVDGVMMGREAYQNPYILAQVDSQLFGLASE--I 249
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
P+R +++ M+ Y+ Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 250 PSRHEVVRMMLPYMEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKQGAG 307
Query: 301 FQFFLNTL 308
Q L+ +
Sbjct: 308 IQVVLDAM 315
>gi|336316388|ref|ZP_08571287.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
gi|335879257|gb|EGM77157.1| tRNA dihydrouridine synthase A [Rheinheimera sp. A13L]
Length = 333
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/308 (48%), Positives = 206/308 (66%), Gaps = 4/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR FHR ++ ++ LYTEM TT AI+ + L FN EEHP+ Q+G ++ K +
Sbjct: 24 LDWTDKHCRYFHRLLSEHAVLYTEMVTTGAIIYGQGDYLGFNDEEHPVVVQLGGSDSKDM 83
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A SAK+ Q+ GYD IN+N GCPS+RVQNG FGA LM +P LV+ CI MR V+I +TVK
Sbjct: 84 AHSAKLCQERGYDAININVGCPSDRVQNGMFGACLMARPELVAACIHEMRAVVDIPVTVK 143
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY F+ DF+GT++ +GC FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 144 SRIGIDDHDSYQFLVDFIGTIAESGCNQFIVHARKAWLSGLSPKENREIPPLDYERVYQL 203
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP L+I INGG+KT + HL ++DGVM+GREAY NP +++ D Y+N P+ +
Sbjct: 204 KKDFPHLDISINGGVKTLADCLTHLQHVDGVMVGREAYSNPLMLAQIDAAIYNN-PR-AV 261
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
PT ++ M+ YI +Q+ I RHMLGL + + G+ +++ LS+ L
Sbjct: 262 PTPHQVVELMLPYIERQMTQG--ARFWHIARHMLGLFQGVPGARLWRRHLSEIGHLPTSG 319
Query: 301 FQFFLNTL 308
Q L+ L
Sbjct: 320 PQVMLDAL 327
>gi|153839570|ref|ZP_01992237.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
gi|149746903|gb|EDM57891.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus AQ3810]
Length = 326
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V++ +TVK
Sbjct: 73 AKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIETQL--AKGAYLGHITRHMLGLFQNMPGARQWRRHISE 301
>gi|388598475|ref|ZP_10156871.1| tRNA-dihydrouridine synthase A [Vibrio campbellii DS40M4]
Length = 326
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/294 (51%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPADL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 73 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSERGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL Y+DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQYLDGVMIGREAYQSPYLLASVDQELFGSNTP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 301
>gi|145300509|ref|YP_001143350.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853281|gb|ABO91602.1| tRNA-dihydrouridine synthase A [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 331
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 213/308 (69%), Gaps = 4/308 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +TR + LYTEM TT AI+ K L ++ +E P++ Q+G + P L
Sbjct: 15 LDWTDRHCRYFHRLMTRQTLLYTEMVTTGAIIHGKGDYLGYSEQERPVSLQLGGSNPADL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAMRD V+I +TVK
Sbjct: 75 AHCAKLARERGYDEINLNVGCPSDRVQNGRFGACLMGEPALVADCVKAMRDVVDIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F++ F+ V AGC TFIVHAR A+L L+P++NR+IP L Y VY +
Sbjct: 135 TRIGIDDQDSYEFLQTFIEQVRDAGCDTFIVHARKAWLSGLSPRENREIPPLDYPRVYRV 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+PEL I +NGG+ + ++ HL +DGVM+GREAY+NP++++ D + + I
Sbjct: 195 KQDYPELTIALNGGVTSLEQTLEHLQQVDGVMMGREAYQNPYILAQVDSQLFGLASE--I 252
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
P+R +++ M+ Y+ Q+L K ++ +TRHMLGL +N++G+ +++ LS+
Sbjct: 253 PSRHEVVRMMLPYMEQEL--AKGNYLSHMTRHMLGLFQNMQGARAWRRHLSENACKQGAG 310
Query: 301 FQFFLNTL 308
Q L+ +
Sbjct: 311 IQVVLDAM 318
>gi|410085161|ref|ZP_11281881.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
gi|409768370|gb|EKN52432.1| tRNA dihydrouridine synthase A [Morganella morganii SC01]
Length = 348
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR+++R++ LYTEM TT AIL K L +N EHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRKLSRHALLYTEMVTTGAILFGKGDYLAYNEAEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+ AMRD +I +TVK
Sbjct: 94 AQCAKIAQERGYDEINLNVGCPSDRVQNGMFGACLMGNASLVADCVAAMRDVTDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC F++H R A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFVGTVADRGGCEMFVIHGRKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
LKKDFP L + +NGGIKT +E HL Y+DGVM+GREAY+NP +++ D + + + LP
Sbjct: 214 LKKDFPHLTMALNGGIKTLEEAKTHLQYMDGVMVGREAYQNPSILAQVDNVLFDAALP-- 271
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI +L + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 272 -VTDTVAAVEAMYPYIEAELATGTY--LGHITRHMLGIFQGIPGARQWRRHLSE 322
>gi|313667754|ref|YP_004048038.1| dihydrouridine synthase [Neisseria lactamica 020-06]
gi|313005216|emb|CBN86649.1| Putative dihydrouridine synthase [Neisseria lactamica 020-06]
Length = 336
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK ++ +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAVEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVHIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ CRTFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACRTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPELEIIINGGITANEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAALLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 GNDGSLILEA 325
>gi|422321779|ref|ZP_16402824.1| hypothetical protein HMPREF0005_02052 [Achromobacter xylosoxidans
C54]
gi|317403413|gb|EFV83926.1| hypothetical protein HMPREF0005_02052 [Achromobacter xylosoxidans
C54]
Length = 327
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/301 (48%), Positives = 201/301 (66%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L GN LDF+ EHP+A Q+G +EP
Sbjct: 2 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLYGNVARHLDFDEAEHPVALQLGGSEPDA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+V+I +TV
Sbjct: 62 LAQSARLGQQWGYDEINLNCGCPSERVQKGAFGACLMAEPDLVADCIKAMQDAVDIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 122 KHRLGLDYDESYAFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVSQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ ++NGG+ + DGVMLGR A+ P ++S L + P +
Sbjct: 182 LKRDFPDCVFVLNGGLADAAQSVRAAADFDGVMLGRAAWHTPRVLSEVSLQLW---PSVR 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P +++ M+ Y +Q+ + +TR MLGL+ G+ +++++LS P LL +
Sbjct: 239 LPGDAQVVDAMMEYAARQVAQG--VPLRVMTRPMLGLVNGQSGARRWRRMLSDPALLAAN 296
Query: 300 N 300
+
Sbjct: 297 D 297
>gi|261250374|ref|ZP_05942949.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953731|ref|ZP_12596774.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938943|gb|EEX94930.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816847|gb|EGU51740.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 333
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + PK L
Sbjct: 20 LDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLGGSNPKDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMRD V++ +TVK
Sbjct: 80 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMGEPQLVADCVAAMRDVVDVPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 140 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDF L I +NGG+KT E HL ++DGVM+GREAY+NP++++ D + + P
Sbjct: 200 LKKDFSHLAIAVNGGVKTLAETKEHLQHLDGVMVGREAYQNPYILAEVDQQIFGLDKP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QQL+N + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 258 -VKKRTQVVEEMYPYIEQQLSNGAY--LGHITRHMLGLFQNMPGARQWRRYISE 308
>gi|417854208|ref|ZP_12499530.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338218392|gb|EGP04165.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 327
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|387872936|ref|YP_005804323.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
gi|283480036|emb|CAY75952.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae DSM 12163]
Length = 332
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T+ + LY+EM TT AI+ K L F++EEHP+A Q+G ++P L
Sbjct: 17 LDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGDYLAFSSEEHPVALQLGGSDPAAL 76
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V + +TVK
Sbjct: 77 AHCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSVPVTVK 136
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 137 TRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+K+ E +HL Y+DGVM+GREAY+NP L++ D +
Sbjct: 197 LKRDFPHLTLSINGGVKSLAEAKIHLQYLDGVMMGREAYQNPGLLAQVDRELFGCTSPAA 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I ++ M YI ++L N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 257 DP--IAVVRSMYPYIERELANGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 305
>gi|419954119|ref|ZP_14470260.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri TS44]
gi|387969208|gb|EIK53492.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri TS44]
Length = 311
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/306 (49%), Positives = 205/306 (66%), Gaps = 7/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+ L ++A EHP+A Q+G ++
Sbjct: 1 MDWTDRHCRYFLRQLSRHALLYTEMVTTGALIHGDAARYLRYDACEHPLALQLGGSDAAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRDSV I++TV
Sbjct: 61 LAICAKMAETAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDSVGIEVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y+
Sbjct: 121 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT E + HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 181 LKRDFPDLEIILNGGIKTLDECEAHLRTFDGVMLGREAYHNPYLLAQVDQRLFGSSTP-- 238
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+ +R + M YI Q L + ++ +TRH+LGL G+ +F+Q+LS
Sbjct: 239 -VISRAQALRAMRPYIEQHLASG--GTMHHVTRHVLGLGSGFAGARRFRQMLSADIHKAT 295
Query: 299 DNFQFF 304
D F
Sbjct: 296 DPLALF 301
>gi|421264167|ref|ZP_15715172.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401688632|gb|EJS84195.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 327
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPTQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLRMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|423016782|ref|ZP_17007503.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans AXX-A]
gi|338780210|gb|EGP44625.1| tRNA-dihydrouridine synthase A [Achromobacter xylosoxidans AXX-A]
Length = 338
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 203/301 (67%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L GN LDF+ EHP+A Q+G +EP
Sbjct: 14 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLYGNVARHLDFDEAEHPVALQLGGSEPDA 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+V+I +TV
Sbjct: 74 LAQSARLGRQWGYDEINLNCGCPSERVQKGAFGACLMAEPDLVADCIKAMQDAVDIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR FI HARNA LK L+PK NR+IP L+Y+ V
Sbjct: 134 KHRLGLDYEESYAFVRDFVGKIYDTGCRVFIAHARNAVLKGLSPKDNREIPPLRYDVVRQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ ++NGG+ ++ DGVMLGR A+ P ++S L + P +
Sbjct: 194 LKQDFPDCVFVLNGGLADAEQSVRAAADFDGVMLGRAAWHTPRVLSEVSLQLW---PSVR 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M+ Y +Q+ + +TR MLGL+ G+ +++++LS P LL +
Sbjct: 251 LPSDAQVVDAMMEYAARQVAQG--VPLRVMTRPMLGLVNGQSGARRWRRMLSDPALLAAN 308
Query: 300 N 300
+
Sbjct: 309 D 309
>gi|37681156|ref|NP_935765.1| tRNA-dihydrouridine synthase A [Vibrio vulnificus YJ016]
gi|326423833|ref|NP_760320.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
gi|38604852|sp|Q8CWK7.2|DUSA_VIBVU RecName: Full=tRNA-dihydrouridine synthase A
gi|37199907|dbj|BAC95736.1| NifR3/Smm1 family protein [Vibrio vulnificus YJ016]
gi|319999203|gb|AAO09847.2| tRNA dihydrouridine synthase A [Vibrio vulnificus CMCP6]
Length = 326
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V+I +TVK
Sbjct: 73 ATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + + Q
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGS--QSP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R I+ M YI QQL N + +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 IKKRRQIVEEMYPYIEQQLANGAY--LGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|407769501|ref|ZP_11116876.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407287423|gb|EKF12904.1| TIM-barrel protein, yjbN family [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 331
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 205/293 (69%), Gaps = 4/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQI+R++ LYTEM TT AI+ G L +N EHP+A Q+G + P
Sbjct: 13 MDWTDRHDRYFLRQISRHALLYTEMVTTGAIIHGGADRHLRYNTAEHPVALQLGGSNPDD 72
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++ +I + YDEINLNCGCPS+RVQNG FGA LM P +V++C+KAM + +TV
Sbjct: 73 LARACEIANDYAYDEINLNCGCPSDRVQNGAFGACLMATPDVVANCVKAMIATSNASVTV 132
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K+RIGIDD Y ++ FV TV+ AGCRTFIVHAR A+L L+PK+NR++P LKY VY
Sbjct: 133 KNRIGIDDQEDYPSLKRFVETVADAGCRTFIVHARKAWLNGLSPKENREVPPLKYELVYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ PELEI+INGGIKT E + HL +DGVM+GREAY+NP+++S+ D +Y + K
Sbjct: 193 LKQELPELEILINGGIKTLDETEEHLKQVDGVMIGREAYQNPYVLSDVDRRFYGD--DTK 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R + M+ YI + L +N + +TRHMLGL + ++G+ ++++ LS+
Sbjct: 251 PLSRHQVAEAMLPYIDEHLKSNN-GTLGHVTRHMLGLFQQMRGAKQWRRYLSE 302
>gi|259909942|ref|YP_002650298.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
gi|224965564|emb|CAX57096.1| tRNA-dihydrouridine synthase A [Erwinia pyrifoliae Ep1/96]
Length = 331
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T+ + LY+EM TT AI+ K L F++EEHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGDYLAFSSEEHPVALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V + +TVK
Sbjct: 76 AHCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSVPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+K+ E +HL Y+DGVM+GREAY+NP L++ D +
Sbjct: 196 LKRDFPHLTLSINGGVKSLAEAKIHLQYLDGVMMGREAYQNPGLLAQVDRELFGCTSPAA 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I ++ M YI ++L N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--IAVVRSMYPYIERELANGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 304
>gi|398800266|ref|ZP_10559539.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
gi|398095794|gb|EJL86127.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
Length = 332
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 149/295 (50%), Positives = 206/295 (69%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR+++ + LYTEM TT AI+ K L ++ +EHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRKLSGNTLLYTEMVTTGAIIHGKGDYLAYSEDEHPLALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 76 AQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMADAALVADCIKAMRDVVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+GTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDEQDSYEFLCDFIGTVAQQGGCETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT +E LHL ++DGVM+GREAY+NP +++ D +
Sbjct: 196 LKRDFPALTMAINGGIKTLEEAKLHLQHMDGVMMGREAYQNPGILAQVDRELFGR----D 251
Query: 240 IPT--RIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PT + ++ M YI +L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 252 TPTVDPVAVVRSMYPYIEAEL--SKGMYLGHVTRHMLGLFQGIPGARQWRRYLSE 304
>gi|241758541|ref|ZP_04756659.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
gi|241321314|gb|EER57468.1| tRNA-dihydrouridine synthase A [Neisseria flavescens SK114]
Length = 334
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 208/312 (66%), Gaps = 10/312 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + A++ G+K L FN E P+A Q+G ++P
Sbjct: 17 LDWTDRHYRFMARQITRNAWLYSEMVNSGAVVYGDKDRFLSFNEGEQPVALQLGGSDPHD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK + +GY+E+NLNCGCPS RVQ G FGA LM LV+DC+ AM+D VEI +TV
Sbjct: 77 LAIAAKAAETYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVADCLNAMQDVVEIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ CRTFIVHARNA+L L+PK+NR++P LKY +VY
Sbjct: 137 KHRIGVDRQTEYQVVADFVGTLREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYVY 196
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP-- 236
LK++FP+LEI+INGGI T +EI HL ++DGVM+GREAY NP LM ++D +Y+N
Sbjct: 197 RLKQEFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPMLMRDWDALFYNNTHAP 256
Query: 237 -QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
QY D+ + Y R+Q+ + + + I RH LGLM +K + ++++LS L
Sbjct: 257 IQYA-----DLAAWLYAYSREQIASGRGTILRHIVRHALGLMHGLKNARTWRRMLSDATL 311
Query: 296 LTIDNFQFFLNT 307
L ++ L+
Sbjct: 312 LKDNDGSLILDA 323
>gi|429220848|ref|YP_007182492.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
gi|429131711|gb|AFZ68726.1| tRNA dihydrouridine synthase A [Deinococcus peraridilitoris DSM
19664]
Length = 339
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F R ITR + LYTEM TT AIL G+K LD++ EEHP+A Q+G ++P
Sbjct: 15 MDWTDRHDRFFLRLITRRALLYTEMVTTGAILHGDKGRHLDYSPEEHPLALQLGGSDPAA 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I Q WGY EINLN GCPS+RVQ+G FGA LM P LV+ C++AMR V + +TV
Sbjct: 75 LAECARIAQDWGYAEINLNVGCPSDRVQSGMFGACLMAHPDLVARCVEAMRAVVGVPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GIDD++SY+ + FV TVS AGC TFIVHAR A+L L+PK+NR+IP L+Y V
Sbjct: 135 KHRLGIDDLDSYEHLTRFVQTVSGAGCETFIVHARKAWLSGLSPKENREIPPLRYEVVRQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L +++NGGIK+ ++ HL + DGVM+GREAY+NP++++ D + + +
Sbjct: 195 LKVDFPHLTVVLNGGIKSLEDSKAHLEWADGVMIGREAYQNPYMLALADAVLFGDDAPAR 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR +++ ++ Y+ QL + ++ ITRH+LGL G+ +K+ LS+
Sbjct: 255 --TRREVVEALLPYVEVQLARDVY--LSRITRHILGLFAGQSGARAWKRTLSE 303
>gi|146306962|ref|YP_001187427.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina ymp]
gi|145575163|gb|ABP84695.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas mendocina ymp]
Length = 331
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 206/293 (70%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q+G + P+
Sbjct: 21 MDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQLGGSNPQD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACAKMAEQHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 141 KHRIGINGRDSYSELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D + + P
Sbjct: 201 LKRDFPDLEIILNGGIKTLEECEQHLQTFDGVMLGREAYHNPYLLAQVDNRLFGAAAPSI 260
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+R+D + + Y+ Q L ++ ++RH+LGL + G+ +F+Q+LS
Sbjct: 261 ---SRMDALLALKPYVEQHLREG--GTLHHVSRHVLGLAQGFPGARRFRQLLS 308
>gi|388257749|ref|ZP_10134928.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
gi|387938916|gb|EIK45468.1| tRNA-dihydrouridine synthase A [Cellvibrio sp. BR]
Length = 346
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 208/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M + CR F R +T+ + LY+EM TT A+L G+KK LD+NA EHP+A Q+G + P
Sbjct: 30 MEWSTSDCRTFWRMLTKEAVLYSEMVTTGALLHGDKKRFLDYNACEHPLALQLGGSNPTD 89
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I + WGYDE+NLNCGCPS+RVQNG GA LM +P LV+DCI +M+ +V+I +TV
Sbjct: 90 LAECARIAEDWGYDEVNLNCGCPSDRVQNGMIGACLMAEPELVADCIASMQHAVKIPVTV 149
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ Y + FV T+++ GC TFIVHAR A+LK L+PK+NR++P L+Y+ VY
Sbjct: 150 KHRIGIDDMEDYAGLVKFVSTIAATGCSTFIVHARKAWLKGLSPKENREVPPLQYDKVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L IIINGGI T ++ L ++DGVM+GREAY NP+L++ D Y +
Sbjct: 210 LKQDFPQLNIIINGGITTLEQTKTLLAHVDGVMIGREAYSNPYLLAEVDQQIYGS--SRT 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I +R +++ + Y +QL K +N +TRH+LGL + + G+ +F++++S+
Sbjct: 268 IISRDEVMEQFKEYCIEQL--AKGARLNHLTRHILGLYQGLPGARQFRRVISE 318
>gi|312884652|ref|ZP_07744353.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367565|gb|EFP95116.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 333
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 20 LDWTDRHCRFFHRLLTNEALLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMR+ V+I +TVK
Sbjct: 80 AQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMREVVDIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DFV V+ GC F +HAR A+L L+PKQNR+IP L Y Y
Sbjct: 140 TRIGIDDQDSYQFLTDFVSIVAEKGGCEQFTIHARKAWLSGLSPKQNREIPPLDYPRAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
LKKDF L I INGG+KT +E HL ++DGVM+GREAY+NP++++ D L + ++ P
Sbjct: 200 LKKDFSHLNIAINGGVKTLQESQEHLVHLDGVMMGREAYQNPYILAQVDQLIFGADSP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI QQL+ + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 258 -IKKRSQVVEEMYPYIEQQLSQGAY--LGHITRHMLGLFQNMPGARQWRRYISE 308
>gi|333929381|ref|YP_004502960.1| yjbN family TIM-barrel protein [Serratia sp. AS12]
gi|333934334|ref|YP_004507912.1| hypothetical protein SerAS9_4557 [Serratia plymuthica AS9]
gi|386331204|ref|YP_006027374.1| yjbN family TIM-barrel protein [Serratia sp. AS13]
gi|333475941|gb|AEF47651.1| TIM-barrel protein, yjbN family [Serratia plymuthica AS9]
gi|333493441|gb|AEF52603.1| TIM-barrel protein, yjbN family [Serratia sp. AS12]
gi|333963537|gb|AEG30310.1| TIM-barrel protein, yjbN family [Serratia sp. AS13]
Length = 336
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C F VHAR A+L L+PK+NR++P L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFIATVAGRGECDMFTVHARKAWLSGLSPKENREVPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q +
Sbjct: 201 LKRDFPQLTLAINGGVKTLEEAKQHLEHLDGVMMGREAYQNPGILARIDSELFGR--QTE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + II + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 259 VMDSVAIIESLYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 309
>gi|157372686|ref|YP_001480675.1| tRNA-dihydrouridine synthase A [Serratia proteamaculans 568]
gi|157324450|gb|ABV43547.1| TIM-barrel protein, yjbN family [Serratia proteamaculans 568]
Length = 336
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFHRLLTKDTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPEL + INGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q +
Sbjct: 201 LKRDFPELTLAINGGVKTLEEAKQHLQHLDGVMMGREAYQNPGILARVDSELFGR--QTE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + II + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 259 VMDSVAIIESLYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 309
>gi|397686767|ref|YP_006524086.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 10701]
gi|395808323|gb|AFN77728.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 10701]
Length = 336
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++ ++ LYTEM TT A++ G+ L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRYFLRQLSGHALLYTEMVTTGALINGDAVRFLRHDEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V+ID+TV
Sbjct: 86 LAACARLTEAAGYDEVNLNVGCPSDRVQNNLIGACLMAHPALVADCVKAMRDAVDIDVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVQEAGCRSFTVHARIAILEGLSPKQNREVPPLRYDIAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKRDFPHLEIILNGGIKTLEECREHLQTFDGVMLGREAYHNPYLLAQVDQQLFGS--DSP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + L + ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 264 VISRADALRAMRPYIERHLADGGA--MHHITRHVLGLGQGFPGARRFRQLLS 313
>gi|220935021|ref|YP_002513920.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219996331|gb|ACL72933.1| tRNA-dihydrouridine synthase A [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 336
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 210/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R I+R++ LYTEM TT A+L G+++ L F+ +EHP+A Q+G +EP +
Sbjct: 27 MDWTDRHCRYFLRLISRHTLLYTEMVTTGALLHGDRERFLAFHPDEHPLALQLGGSEPGE 86
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQ+G FGA LM +P LV+DC++AMR + + +TV
Sbjct: 87 LAACARMAEDHGYDEVNLNVGCPSDRVQSGRFGACLMAEPQLVADCVEAMRSACGLPVTV 146
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY + F+ TV +GCRTFI+HAR A+L+ L+P++NR++P L++++VY
Sbjct: 147 KTRIGIDDRDSYPELTAFIDTVQRSGCRTFIIHARKAWLQGLSPRENREVPPLRHDWVYR 206
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEII+NGG+K + L +DGVMLGREAY NP++++ D +Y + +
Sbjct: 207 LKQDFPALEIILNGGVKDLDTVSDALRQVDGVMLGREAYHNPYVLAQVDARFYGD--AHP 264
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P+R ++ R + Y+ +L + ++TRH+LGL + + G+ +++ +S+
Sbjct: 265 VPSRHQVVERFLPYVEARLAQG--VPLQAMTRHILGLFQGVPGARAWRRTISE 315
>gi|425066300|ref|ZP_18469420.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
gi|404381885|gb|EJZ78350.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida P1059]
Length = 327
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AIL K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAILHAKYDHLEFSPAENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV++C+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVANCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|421501772|ref|ZP_15948729.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina DLHK]
gi|400347515|gb|EJO95868.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina DLHK]
Length = 331
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 206/293 (70%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q+G + P+
Sbjct: 21 MDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQLGGSNPQD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACAKMAEQHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 141 KHRIGINGRDSYSELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D + + P
Sbjct: 201 LKQDFPDLEIILNGGIKTLEECEQHLQTFDGVMLGREAYHNPYLLAQVDNRLFGAAAPSI 260
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+R+D + + Y+ Q L ++ ++RH+LGL + G+ +F+Q+LS
Sbjct: 261 ---SRMDALLALKPYVEQHLREG--GTLHHVSRHVLGLAQGFPGARRFRQLLS 308
>gi|417320900|ref|ZP_12107441.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
gi|328472365|gb|EGF43235.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 10329]
Length = 326
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM++ V++ +TVK
Sbjct: 73 AKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKEVVDVPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQNMPGARQWRRHISE 301
>gi|15603283|ref|NP_246357.1| tRNA-dihydrouridine synthase A [Pasteurella multocida subsp.
multocida str. Pm70]
gi|38605041|sp|Q9CL29.1|DUSA_PASMU RecName: Full=tRNA-dihydrouridine synthase A
gi|12721794|gb|AAK03502.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 327
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPTQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLLMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|453063437|gb|EMF04416.1| tRNA-dihydrouridine synthase A [Serratia marcescens VGH107]
Length = 336
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TV+ G C F +HAR A+L L+PK+NR++P L Y Y
Sbjct: 141 TRIGIDDQDSYAFLCDFIQTVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q
Sbjct: 201 LKRDFPALTIAINGGVKTLEEAQQHLQHLDGVMMGREAYQNPGILARVDSELFGA--QTA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P + I+ + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 259 VPDSVAIVEALYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 309
>gi|375266803|ref|YP_005024246.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
gi|369842123|gb|AEX23267.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
Length = 326
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++ +TVK
Sbjct: 73 AKCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L + INGG+K+ +E HL ++DGVM+GREAY++P+++++ D + S+ P
Sbjct: 193 LKKDFSHLTVAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYILASVDQELFGSSAP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI +QL K I ITRHMLGL +++ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEEQL--AKGAYIGHITRHMLGLFQSMPGARQWRRHISE 301
>gi|68249213|ref|YP_248325.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
gi|68057412|gb|AAX87665.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 86-028NP]
Length = 327
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAAI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQLN ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLNQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|425064138|ref|ZP_18467263.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
gi|404381731|gb|EJZ78199.1| tRNA dihydrouridine synthase A [Pasteurella multocida subsp.
gallicida X73]
Length = 327
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPTQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A+I Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAEIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLRMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|365539321|ref|ZP_09364496.1| tRNA-dihydrouridine synthase A [Vibrio ordalii ATCC 33509]
Length = 326
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEH +A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHSVALQLGGSNPQDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q++GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 73 AHCAKLAQQYGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKSVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD++SY+F+ DF+ VS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 133 TRIGIDDMDSYEFLTDFISLVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDFP L I +NGG+KT E+ HL ++DGVM+GREAY++P+L++ D + + P
Sbjct: 193 LKKDFPHLVIAVNGGVKTLAEVSEHLQHLDGVMIGREAYQSPYLLAEVDQTIFGMDTP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R II M YI +QL + ITRHMLG+ +N+ G+ ++++ +S+
Sbjct: 251 -IKKRSQIIEEMFPYIERQLAQGSY--LGHITRHMLGMFQNMPGARQWRRYISE 301
>gi|387121479|ref|YP_006287362.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756685|ref|ZP_11481125.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416036249|ref|ZP_11573666.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416049171|ref|ZP_11576490.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347991987|gb|EGY33425.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996565|gb|EGY37630.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655707|gb|EGY71147.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875971|gb|AFI87530.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 327
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 203/293 (69%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
+N T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 19 LNWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYEQVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + +N P
Sbjct: 199 KRDFPHLLISINGGIKTIDEMQQHLQLVDGVMVGREAYQNPSLLGYIDQALFNANAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + + +M+ YI QQL+ +N I RH+L ++ KG+ ++++ LS+
Sbjct: 256 IVTPREAVEKMLPYIEQQLSRGVY--LNHIVRHILSAFQHCKGARQWRRYLSE 306
>gi|429098155|ref|ZP_19160261.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
gi|426284495|emb|CCJ86374.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
Length = 331
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEVNLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDEQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
L++DFP+L + INGGIKT +E HL ++DGVM+GREAY+NP L+++ D + + + P
Sbjct: 200 LRRDFPQLTMSINGGIKTLEEAKAHLEHMDGVMVGREAYQNPGLLASVDRDIFGLDTP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 258 -VADPVAVVRAMYPYIERELSNGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|416056193|ref|ZP_11579807.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416068298|ref|ZP_11582733.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444333553|ref|ZP_21149328.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348001196|gb|EGY41950.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002217|gb|EGY42923.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551562|gb|ELT59375.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 327
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 203/293 (69%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
+N T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 19 LNWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + +N P
Sbjct: 199 KRDFPHLLISINGGIKTIDEMQQHLQLVDGVMVGREAYQNPSLLGYIDQALFNANAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + + +M+ YI QQL+ +N I RH+L ++ KG+ ++++ LS+
Sbjct: 256 IVTPREAVEKMLPYIEQQLSRGVY--LNHIVRHILSAFQHCKGARQWRRYLSE 306
>gi|270263331|ref|ZP_06191601.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386823311|ref|ZP_10110462.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
gi|270043019|gb|EFA16113.1| tRNA-dihydrouridine synthase A [Serratia odorifera 4Rx13]
gi|386379771|gb|EIJ20557.1| tRNA-dihydrouridine synthase A [Serratia plymuthica PRI-2C]
Length = 336
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q +
Sbjct: 201 LKRDFPQLTLAINGGVKTLEEAKQHLEHLDGVMMGREAYQNPGILARVDSELFGR--QTE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + II + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 259 VMDSVAIIESLYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 309
>gi|119946739|ref|YP_944419.1| tRNA-dihydrouridine synthase A [Psychromonas ingrahamii 37]
gi|119865343|gb|ABM04820.1| tRNA-U16,U17-dihydrouridine synthase [Psychromonas ingrahamii 37]
Length = 330
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 201/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LY+EM TT AIL K L +A EHP+ Q+G + P L
Sbjct: 21 LDWTDRHCRYFHRVMSKNTLLYSEMVTTGAILYGKGDYLQKDAAEHPVCLQLGGSAPVDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A SA ++ G+DEINLN GCPS+RVQNG FGA LM++ LV D IKAM+D+ + ++VK
Sbjct: 81 ATSALAGKERGFDEINLNVGCPSDRVQNGRFGACLMSEGELVGDAIKAMKDATGLPVSVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY F+ DFVG V+ GC TF+VHAR A+L L+PKQNR +P L Y VY L
Sbjct: 141 TRIGIDDLDSYAFLCDFVGKVAEKGCDTFVVHARKAWLSGLSPKQNRDVPPLDYERVYQL 200
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP+L I INGGIKT E + HL Y+DGVMLGRE Y NP+L+S+ D ++ KI
Sbjct: 201 KKDFPQLTIAINGGIKTLDECETHLQYLDGVMLGREIYTNPYLLSSVDQRLFAG--NEKI 258
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR +++ +M YI QQL+N + RHMLGL + + G+ +++ LS+
Sbjct: 259 LTRFEVLEKMYPYIEQQLSNGAY--FKHVARHMLGLFQGLPGARAWRRHLSE 308
>gi|253689857|ref|YP_003019047.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756435|gb|ACT14511.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 340
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ + LYTEM TT AIL K L ++ EEHP+A Q+G ++P+ L
Sbjct: 30 LDWTDRHCRYFLRQLSSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPQAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEASLVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TV+ G C TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYAFLCDFIQTVAELGECETFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGI--DAA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++ M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 TPDLAGVVRTMYPYIERELSGGAA--LGHITRHMLGMFQGIPGARQWRRYLSE 318
>gi|424041341|ref|ZP_17779297.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
gi|408890835|gb|EKM28832.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-02]
Length = 326
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPTDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++ +TVK
Sbjct: 73 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMFPYIEAQL--AKGAYLGHISRHMLGLFQNMPGARQWRRHISE 301
>gi|440232766|ref|YP_007346559.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
gi|440054471|gb|AGB84374.1| tRNA-U16,U17-dihydrouridine synthase [Serratia marcescens FGI94]
Length = 348
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L ++ +EHP+A Q+G ++P L
Sbjct: 33 LDWTDRHCRYFHRLLSKETLLYTEMVTTGAIIHGKGDYLAYSEQEHPLALQLGGSDPAAL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 93 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQAALVADCIKAMRDAVSIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 153 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+K+ E HL ++DGVM+GREAY+NP +++ D + + Q
Sbjct: 213 LKRDFPALTIAINGGVKSLAEAQQHLQHVDGVMMGREAYQNPGILAQVDRELFGS--QAA 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++++ + YI ++L N + ITRH+LGL + I G+ ++++ LS+
Sbjct: 271 VRNSVEVVEALYPYIERELANGTY--LGHITRHILGLFQGIPGARQWRRHLSE 321
>gi|339477902|ref|YP_004706722.1| putative tRNA-dihydrouridine synthase A [Candidatus Moranella
endobia PCIT]
gi|338172453|gb|AEI74854.1| putative tRNA-dihydrouridine synthase A [Candidatus Moranella
endobia PCIT]
Length = 344
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
+NLTDRHCR F RQ++R + LYTEM TT A+L K L FN EEHP+A Q+G NEPK+L
Sbjct: 35 LNLTDRHCRFFLRQLSRRALLYTEMVTTGALLHGKGDDLIFNEEEHPLALQLGGNEPKEL 94
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q GYDE+NLN GCPS RVQNG FGA LM + LV DCI AMR++V + ITVK
Sbjct: 95 ARCAKIAQHMGYDEVNLNVGCPSARVQNGRFGACLMAETALVGDCIAAMREAVSLPITVK 154
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID +SY+F+ +F+ T ++ GC+ FI+HAR A+L L+PK NRKIP L Y VY
Sbjct: 155 TRIGIDMQDSYEFLYEFIDTCATKGGCQKFIIHARKAWLNGLSPKDNRKIPPLDYERVYR 214
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L+I++NGGI T + HL +DGVM+GREAY NP L+ D +S
Sbjct: 215 LKHDFPLLQIVVNGGITTLHDAITHLQQLDGVMIGREAYYNPGLLMRVDSELFSAFD--P 272
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+PT+ +IN M+ YI +L + + ITRHMLGL + + G+ +++ LS+
Sbjct: 273 LPTQAAVINAMLPYIEYELLHG--TTLIKITRHMLGLFQGMPGAKHWRRYLSE 323
>gi|320155187|ref|YP_004187566.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
gi|319930499|gb|ADV85363.1| tRNA dihydrouridine synthase A [Vibrio vulnificus MO6-24/O]
Length = 326
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLSYNQEEHPVALQLGGSNPQDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ M++ V+I +TVK
Sbjct: 73 ATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVATMKEVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + + Q
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGS--QSP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R I+ M YI QQL N + +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 IKKRRQIVEEMYPYIEQQLANGAY--LGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|417841940|ref|ZP_12488036.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
gi|341948036|gb|EGT74673.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M19501]
Length = 327
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G +EP++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSEPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|448244174|ref|YP_007408227.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
gi|445214538|gb|AGE20208.1| tRNA-dihydrouridine synthase A [Serratia marcescens WW4]
Length = 336
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIQTVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + Q
Sbjct: 201 LKRDFPALTIAINGGVKTLGEAQQHLQHLDGVMMGREAYQNPGILARVDSELFGV--QTA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P + I+ + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 259 VPDSVAIVEALYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 309
>gi|378769115|ref|YP_005197590.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
gi|365188603|emb|CCF11553.1| tRNA-dihydrouridine synthase A [Pantoea ananatis LMG 5342]
Length = 331
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L +N +EHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGDYLAYNEQEHPVALQLGGSDPVAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V+I +TVK
Sbjct: 76 AQCAALAEQHGYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADGIKAMRDVVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 196 LKRDFPQLTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGRDRPAV 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--VAVVRAMYPYIEAEL--SKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 304
>gi|345297462|ref|YP_004826820.1| yjbN family TIM-barrel protein [Enterobacter asburiae LF7a]
gi|345091399|gb|AEN63035.1| TIM-barrel protein, yjbN family [Enterobacter asburiae LF7a]
Length = 331
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVAGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPQLTMSINGGIKSLEEAKAHLGHMDGVMVGREAYQNPGILATVDREIFGVEGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VSVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|317493445|ref|ZP_07951866.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918388|gb|EFV39726.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 337
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 209/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR+++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 25 LDWTDRHCRYFHRKLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSDPEAL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A A++ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 85 AHCARLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ VS G C +F VHAR A+L L+PK+NR+IP L Y VY
Sbjct: 145 TRIGIDDQDSYEFLCDFIDIVSGKGECNSFTVHARKAWLSGLSPKENREIPPLDYERVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E +HL ++DGVM+GREAY++P ++++ D + +
Sbjct: 205 LKRDFPHLNIAINGGVKTLEEAKIHLQHLDGVMMGREAYQSPSILAHVDRELFDSTAD-- 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P ID++ + YI ++L+N + ITRH+LGL ++I G+ ++++ LS+
Sbjct: 263 VPNSIDVVRSLYPYIERELSNGTY--LGHITRHILGLFQSIPGARQWRRHLSE 313
>gi|16329480|ref|NP_440208.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|383321221|ref|YP_005382074.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324391|ref|YP_005385244.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490275|ref|YP_005407951.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435541|ref|YP_005650265.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|451813639|ref|YP_007450091.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
gi|2829606|sp|P72872.1|DUS2_SYNY3 RecName: Full=Probable tRNA-dihydrouridine synthase 2
gi|1651962|dbj|BAA16888.1| sll0926 [Synechocystis sp. PCC 6803]
gi|339272573|dbj|BAK49060.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803]
gi|359270540|dbj|BAL28059.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273711|dbj|BAL31229.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276881|dbj|BAL34398.1| tRNA-dihydrouridine synthase A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957359|dbj|BAM50599.1| tRNA-dihydrouridine synthase A [Bacillus subtilis BEST7613]
gi|451779608|gb|AGF50577.1| hypothetical protein MYO_13150 [Synechocystis sp. PCC 6803]
Length = 334
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 214/312 (68%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQ+TR++ LYTEM T QAIL G+++ L+F+ EE P+A Q+G ++P+
Sbjct: 19 MDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGDRQRLLNFSPEEKPVALQLGGDDPQL 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I Q WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ C+ AM+ +VEI +TV
Sbjct: 79 LAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAVEIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID +SY+ + FV V++AGC+ F VHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 139 KHRIGIDHRDSYEDLVHFVEIVANAGCQRFTVHARKAWLQGLSPKENRTIPPLRYEDVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
LKKDFP+L I INGGI ++I HL+++D VM+GR AY+NP+L + D + Y +NL
Sbjct: 199 LKKDFPQLLIEINGGITQTEQIQQHLSHVDAVMVGRAAYENPYLFATVDRDIYHKTNL-- 256
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+P+R +II RM+ Y+ ++L + +N ITRH+L L + +++ LS LL
Sbjct: 257 --VPSRAEIIERMLPYVEERLRHG--DRLNQITRHLLSLFNGQPRAKFWRRTLSDSTLLA 312
Query: 298 IDNFQFFLNTLN 309
+ L
Sbjct: 313 SAGPELLQTALQ 324
>gi|424031915|ref|ZP_17771339.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
gi|408876920|gb|EKM16025.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-01]
Length = 315
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPTDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++ +TVK
Sbjct: 62 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 182 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSEIVEEMFPYIEAQL--AKGAYLGHISRHMLGLFQNMPGARQWRRHISE 290
>gi|421082495|ref|ZP_15543378.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
gi|401702732|gb|EJS92972.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
Length = 340
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G ++P L
Sbjct: 30 LDWTDRHCRYFLRQLTGQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPTAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TV+ G C TF++HAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCEFIQTVAGRGECDTFVIHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTLAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGI--DAV 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P D++ M YI ++L+ ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 APDLADVVRAMYPYIERELSGG--ASLGHITRHMLGMFQGITGARQWRRYLSE 318
>gi|261346564|ref|ZP_05974208.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
gi|282565268|gb|EFB70803.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
Length = 341
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 208/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP++ Q+G ++P L
Sbjct: 30 LDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIFGKGDYLAYSEEEHPVSLQLGGSDPAAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 90 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMRDVVSIPVTVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ TVS+ G C TF++HAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDEQDSYEFLCDFIDTVSTKGDCDTFVIHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L + INGG+KT +E HL Y+DGVM+GREAY+NP +++ D + +P
Sbjct: 210 LKRDFPHLTMAINGGVKTLEEAKEHLKYLDGVMMGREAYQNPSILTAVDNQLFDETMP-- 267
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I I+ + RM YI ++L+N + +TRHMLG+ + I G+ ++++ LS+
Sbjct: 268 -IVDNIEAVRRMYPYIEKELSNGAY--LGHMTRHMLGIFQGIPGARQWRRHLSE 318
>gi|238021360|ref|ZP_04601786.1| hypothetical protein GCWU000324_01259 [Kingella oralis ATCC 51147]
gi|237868340|gb|EEP69346.1| hypothetical protein GCWU000324_01259 [Kingella oralis ATCC 51147]
Length = 367
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 207/311 (66%), Gaps = 7/311 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++WLYTEM AI+ G+ L +N EHPIA Q+G ++P +
Sbjct: 52 LDWTDRHFRYLARQISRHTWLYTEMINAGAIIHGDPARFLAYNESEHPIALQLGGSDPAQ 111
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LA++AK + ++ YDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+ + + +IT
Sbjct: 112 LAQAAKKVAQYQYDEINLNCGCPSPRVQKGAFGACLMNDVGLVADCLNAMQQAAPDCEIT 171
Query: 119 VKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIG+D Y VRDFVGT+ RT+IVHARNA+L L+PK+NR IP LKY++V
Sbjct: 172 VKHRIGVDKQTEYRIVRDFVGTLREKTPVRTYIVHARNAWLDGLSPKENRDIPPLKYHYV 231
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLP 236
Y LK+DFP+LEIIINGGIKT EI HL ++DGVM+GREAY N +M ++D L Y S P
Sbjct: 232 YQLKQDFPDLEIIINGGIKTNAEIAEHLRHVDGVMIGREAYHNTMIMRDWDRLFYDSRQP 291
Query: 237 QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ P ++I R+ Y + QL + + + RH LGLM + G+ ++Q+LS LL
Sbjct: 292 EISYP---ELIQRLYAYAQTQLAAGRGTILRHMARHYLGLMHGLHGARAWRQMLSDAELL 348
Query: 297 TIDNFQFFLNT 307
+ + L
Sbjct: 349 KANRAELILEA 359
>gi|365968567|ref|YP_004950128.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365747480|gb|AEW71707.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 331
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNASLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPQLTMSINGGIKSLEEAKTHLEHMDGVMVGREAYQNPGILATVDREIFGVEGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|91227265|ref|ZP_01261690.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
gi|91188659|gb|EAS74948.1| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01]
Length = 315
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPADL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 62 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 182 LKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 240 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 290
>gi|383191973|ref|YP_005202101.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590231|gb|AEX53961.1| tRNA dihydrouridine synthase A [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 342
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/294 (52%), Positives = 202/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L F EEHP++ Q+G + P L
Sbjct: 25 LDWTDRHCRHFHRLMTGQTLLYTEMVTTGAIIHGKGDYLGFGDEEHPVSLQLGGSNPADL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 85 AHCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGQASLVADCIKAMRDVVSIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ VS GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 145 TRIGIDDQDSYEFLCDFIRQVSENGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L + INGGIKT +E HL Y+DGVM+GREAY+NP ++ N D + S+ P
Sbjct: 205 LKRDFPHLTMAINGGIKTLEEAKTHLQYMDGVMVGREAYQNPGILLNVDRELFGSDAP-- 262
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T D+I + YI +L K + ITRH+LGL + + G+ +F++ LS+
Sbjct: 263 -LKTGPDVIRALYPYIEAEL--GKGTYLGHITRHILGLFQGVPGARQFRRHLSE 313
>gi|237809463|ref|YP_002893903.1| yjbN family TIM-barrel protein [Tolumonas auensis DSM 9187]
gi|237501724|gb|ACQ94317.1| TIM-barrel protein, yjbN family [Tolumonas auensis DSM 9187]
Length = 338
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AIL K L ++ EEHPIA Q+G ++P L
Sbjct: 25 LDWTDRHCRYFHRLLTKNTLLYTEMVTTGAILFGKGDYLQYSTEEHPIALQLGGSDPVDL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK A+I + GYDEINLN GCPS+RVQNG FGA LM LV+DC+ AMR V+I +TVK
Sbjct: 85 AKCARIAEDRGYDEINLNVGCPSDRVQNGRFGACLMASAQLVADCVAAMRAEVQIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY F+ DF+ TV GC TFIVHAR A+L L+PK+NR IP L Y VY L
Sbjct: 145 TRIGIDELDSYAFLCDFIETVQQTGCNTFIVHARKAWLSGLSPKENRDIPPLDYERVYQL 204
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + HL Y+DGVM+GREAY+NP++++ D +++ + +
Sbjct: 205 KRDYPHLTIAINGGITDLAQAKHHLQYVDGVMVGREAYQNPYMLAQVDAQLFAD--PHPV 262
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R + + +M+ YI L ++ ITRHMLGL + + G+ +++ LS+
Sbjct: 263 LSRHETVMQMLPYIDAHLQAGGY--LSHITRHMLGLFQGVPGARAWRRHLSE 312
>gi|284800241|ref|ZP_05985987.2| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
gi|284795603|gb|EFC50950.1| tRNA dihydrouridine synthase A [Neisseria subflava NJ9703]
Length = 317
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 208/312 (66%), Gaps = 10/312 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + A++ G+K L FN E P+A Q+G ++P
Sbjct: 2 LDWTDRHYRFMARQITRNAWLYSEMVNSGAVVYGDKDRFLSFNEGEQPVALQLGGSDPHD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA + K + +GY+E+NLNCGCPS RVQ G FGA LM LV+DC+ AM+D+VEI +TV
Sbjct: 62 LAIATKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVADCLNAMQDAVEIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ CRTFIVHARNA+L L+PK+NR++P LKY +VY
Sbjct: 122 KHRIGVDRQTEYQVVADFVGTLREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYVY 181
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLP 236
LK+DFP+LEI+INGGI T +EI HL ++DGVM+GREAY NP LM ++D +Y ++ P
Sbjct: 182 RLKQDFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPMLMRDWDTMFYNDAHAP 241
Query: 237 -QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
QY D+ + Y R+Q+ + + I RH LGLM +K + ++++LS L
Sbjct: 242 IQYA-----DLAAWLYAYSREQIALGRGTILRHIVRHALGLMHGLKNARTWRRMLSDATL 296
Query: 296 LTIDNFQFFLNT 307
L ++ L+
Sbjct: 297 LKDNDGSLILDA 308
>gi|146282034|ref|YP_001172187.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri A1501]
gi|145570239|gb|ABP79345.1| TIM-barrel protein, yjbN family [Pseudomonas stutzeri A1501]
Length = 334
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 201/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q+G + P
Sbjct: 24 MDWTDRHCRFFLRQLSKHALLYTEMVTTGALLHGDTARFLRYDESEHPLALQLGGSVPGD 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +++TV
Sbjct: 84 LAACAKLAEVAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVGVEVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P L+Y+
Sbjct: 144 KHRIGINGRDSYSQLCDFVGQVREAGCRSFTVHARIAILEGLSPKQNREVPPLRYDVAAQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D + + N
Sbjct: 204 LKRDFPDLEIILNGGIKTLEECREHLQTFDGVMLGREAYHNPYLLAQVDSSLFGN--NAP 261
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + L ++ +TRH+LGL + G+ +F+Q+LS
Sbjct: 262 VISRAQALRNMRPYIERHLAEGGA--MHHVTRHVLGLGQGFPGARRFRQLLS 311
>gi|269964431|ref|ZP_06178672.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
gi|269830769|gb|EEZ84987.1| NifR3/Smm1 family protein [Vibrio alginolyticus 40B]
Length = 354
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 41 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPADL 100
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 101 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 160
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 161 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 220
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 221 LKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 278
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 279 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 329
>gi|163857356|ref|YP_001631654.1| tRNA-dihydrouridine synthase A [Bordetella petrii DSM 12804]
gi|163261084|emb|CAP43386.1| putative dihydrouridine synthase [Bordetella petrii]
Length = 358
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 200/301 (66%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L GN LDF+A EHP+A Q+G +EP
Sbjct: 35 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGNVGRHLDFDAAEHPVALQLGGSEPDA 94
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V++ +T+
Sbjct: 95 LAHAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCMKAMQDAVDLPVTI 154
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + + GCR FIVHARNA LK L+PK NR+IP L+Y+
Sbjct: 155 KHRLGLDYDESYSFVRDFVGAIHATGCRVFIVHARNAVLKGLSPKDNREIPPLRYDVARQ 214
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+ I++NGG+ + DGVMLGR A+ P ++S + + P +
Sbjct: 215 LKADFPDSVIVLNGGLADAAQAVGAAGEFDGVMLGRAAWHTPRVLSEVSMQLW---PSVR 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+PT +++ M+ Y Q+ + I R +LGL+ G+ +++++LS P L +
Sbjct: 272 LPTDAQVVDAMVRYAAGQVAQG--VPLRVIVRPLLGLVNGQSGARRWRRMLSDPARLAAN 329
Query: 300 N 300
+
Sbjct: 330 D 330
>gi|148827810|ref|YP_001292563.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittGG]
gi|148719052|gb|ABR00180.1| hypothetical protein CGSHiGG_06425 [Haemophilus influenzae PittGG]
Length = 327
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KHCARLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYTRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAYEAVQSMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|33592223|ref|NP_879867.1| tRNA-dihydrouridine synthase A [Bordetella pertussis Tohama I]
gi|384203526|ref|YP_005589265.1| tRNA-dihydrouridine synthase A [Bordetella pertussis CS]
gi|408416157|ref|YP_006626864.1| hypothetical protein BN118_2305 [Bordetella pertussis 18323]
gi|33571868|emb|CAE41383.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381640|gb|AEE66487.1| tRNA-dihydrouridine synthase A [Bordetella pertussis CS]
gi|401778327|emb|CCJ63730.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 337
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 203/301 (67%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 14 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQLGGSEPDA 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 74 LAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCMKAMQDAVDIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 134 KHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVARQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++ P +
Sbjct: 194 LKRDFPDCVIVLNGGLADAQAAQAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW---PAIR 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M+ Y Q+ + +TR +LGL+ G+ +++++LS P L +
Sbjct: 251 LPSDAQVVDAMMQYAATQIARG--VPLRVMTRPLLGLVNGQAGARRWRRLLSDPVRLAAN 308
Query: 300 N 300
+
Sbjct: 309 D 309
>gi|421785829|ref|ZP_16222252.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
gi|407752018|gb|EKF62178.1| tRNA-dihydrouridine synthase [Serratia plymuthica A30]
Length = 336
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFIATVAGRGECDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGG+KT E HL ++DGVM+GREAY+NP +++ D + Q +
Sbjct: 201 LKRDFPQLTLAINGGVKTLGEAKQHLEHLDGVMMGREAYQNPGILARVDSELFGR--QTE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + II + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 259 VMDSVAIIESLYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 309
>gi|307132468|ref|YP_003884484.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
gi|306529997|gb|ADM99927.1| tRNA dihydrouridine synthase A [Dickeya dadantii 3937]
Length = 346
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AIL K L ++ EEHP+A Q+G ++P L
Sbjct: 36 LDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGDYLAYSDEEHPLALQLGGSDPAAL 95
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR+ V+I +TVK
Sbjct: 96 AQCAVLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADCVTAMRERVDIPVTVK 155
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS GC TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 156 TRIGIDDQDSYAFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+KT E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 216 LKRDFPSLTLAINGGVKTLAEARQHLQHVDGVMVGREAYQNPGMLAQVDRELFGA--DSA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + D++ M YI ++L+ ++ ITRHMLGL + + G+ ++++ LS+
Sbjct: 274 APDQADVVRAMYPYIERELSAG--ASLGHITRHMLGLFQGLPGARQWRRYLSE 324
>gi|26988893|ref|NP_744318.1| tRNA-dihydrouridine synthase A [Pseudomonas putida KT2440]
gi|38604779|sp|Q88KX0.1|DUSA_PSEPK RecName: Full=tRNA-dihydrouridine synthase A
gi|24983702|gb|AAN67782.1|AE016409_8 TIM-barrel protein, yjbN family [Pseudomonas putida KT2440]
Length = 336
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 206 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 263
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 -VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 314
>gi|354596235|ref|ZP_09014252.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
gi|353674170|gb|EHD20203.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
Length = 346
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 207/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R++TR++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFLRRLTRHALLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSDPEAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A++ ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+DC+KAM+D V I +TVK
Sbjct: 94 AQCAQLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGEAPLVADCVKAMKDRVAIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ GC TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDRDSYEFLCDFIHTVAERGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E +HL ++DGVM+GREAY NP +++ D + +P
Sbjct: 214 LKRDFPALTIAINGGVKTLEEAKIHLQHLDGVMMGREAYHNPGILAQVDAELF-GVPAAS 272
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 273 LDL-VAAVQAMYPYIERELSQGAA--LGHITRHMLGLFQGVTGARQWRRYLSE 322
>gi|323492300|ref|ZP_08097456.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
gi|323313464|gb|EGA66572.1| tRNA-dihydrouridine synthase A [Vibrio brasiliensis LMG 20546]
Length = 333
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 202/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 20 LDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMRD V+I +TVK
Sbjct: 80 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMGEPQLVADCVAAMRDVVDIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 140 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDF L I +NGG+KT +E HL ++DGVM+GREAY+NP++++ D + + P
Sbjct: 200 LKKDFSHLVIAVNGGVKTLQETKEHLQHLDGVMVGREAYQNPYILAEVDQQIFGLDTP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI QQL +K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 258 -IKKRSQVVEEMYPYIEQQL--SKGAYLGHITRHMLGLFQNMPGARQWRRYISE 308
>gi|385786265|ref|YP_005817374.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
gi|310765537|gb|ADP10487.1| tRNA-dihydrouridine synthase A [Erwinia sp. Ejp617]
Length = 331
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T+ + LY+EM TT AI+ K L F++EEHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLTQQTLLYSEMVTTGAIIHGKGDYLAFSSEEHPVALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V + +TVK
Sbjct: 76 AHCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSVPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDDQDSYEFLCDFIHTVSEQGGCEVFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+K+ E +HL ++DGVM+GREAY+NP L++ D +
Sbjct: 196 LKRDFPHLTLSINGGVKSLAEAKIHLQHLDGVMMGREAYQNPGLLAQVDRELFGCTSPAA 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I ++ M YI ++L N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--IAVVRSMYPYIERELANGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 304
>gi|260914683|ref|ZP_05921149.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
gi|260631282|gb|EEX49467.1| tRNA-dihydrouridine synthase A [Pasteurella dagmatis ATCC 43325]
Length = 328
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L F+ EE+P+A Q+G + P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLAFSPEENPVALQLGGSNPTQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI AM++ V+I +TVK
Sbjct: 79 AQCAKIAEQRGYAEINLNVGCPSDRVQNGMFGACLMGKADLVAECINAMQEVVDIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ DFV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCDFVQKVHQAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPQLIMSINGGIKTIEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTSPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLTQGVY--LNHMVRHMLGAFQSCKGARQWRRYLSE 306
>gi|271501941|ref|YP_003334967.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech586]
gi|270345496|gb|ACZ78261.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech586]
Length = 344
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AIL K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGKGDYLAYSDEEHPLALQLGGSDPTAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR+ V I +TVK
Sbjct: 94 AQCAVLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADCVTAMRERVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPSLTLAINGGIKTLAEAKQHLEHVDGVMVGREAYQNPGMLAQVDRDLFDA--TSV 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 272 VPNQAAVVQAMYPYIERELSGGAA--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|262393119|ref|YP_003284973.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
gi|262336713|gb|ACY50508.1| tRNA dihydrouridine synthase A [Vibrio sp. Ex25]
Length = 315
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 2 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 62 AKCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKGVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 182 LKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 240 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 290
>gi|421522095|ref|ZP_15968741.1| tRNA-dihydrouridine synthase A [Pseudomonas putida LS46]
gi|402754094|gb|EJX14582.1| tRNA-dihydrouridine synthase A [Pseudomonas putida LS46]
Length = 336
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 206 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 263
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 -VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLS 313
>gi|145633883|ref|ZP_01789604.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145635660|ref|ZP_01791356.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
gi|144985255|gb|EDJ92098.1| hypothetical protein CGSHi3655_08484 [Haemophilus influenzae 3655]
gi|145267055|gb|EDK07063.1| hypothetical protein CGSHiAA_01434 [Haemophilus influenzae PittAA]
Length = 329
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYTRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|444428866|ref|ZP_21224162.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444237906|gb|ELU49549.1| tRNA-dihydrouridine synthase A [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 326
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNAADL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 73 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL Y+DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQYLDGVMIGREAYQSPYLLASVDQELFGSNTP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 301
>gi|322834778|ref|YP_004214805.1| yjbN family TIM-barrel protein [Rahnella sp. Y9602]
gi|384259998|ref|YP_005403932.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
gi|321169979|gb|ADW75678.1| TIM-barrel protein, yjbN family [Rahnella sp. Y9602]
gi|380755974|gb|AFE60365.1| yjbN family TIM-barrel protein [Rahnella aquatilis HX2]
Length = 335
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/294 (52%), Positives = 202/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L F EHP++ Q+G + P L
Sbjct: 18 LDWTDRHCRHFHRLMTGQTLLYTEMVTTGAIIHGKGDYLGFGDAEHPVSLQLGGSNPADL 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 78 AHCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGQASLVADCIKAMRDVVSIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ VS GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 138 TRIGIDDQDSYEFLCDFIRQVSENGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L + INGGIKT +E HL Y+DGVM+GREAY+NP L+ N D + S+ P
Sbjct: 198 LKRDFPHLTLAINGGIKTLEEAKTHLQYMDGVMVGREAYQNPGLLLNVDRELFGSDAP-- 255
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T DII + YI +L +K + ITRH+LGL + + G+ +F++ LS+
Sbjct: 256 -LKTGPDIIRALYPYIEAEL--SKGTYLGHITRHILGLFQGVPGARQFRRHLSE 306
>gi|397694012|ref|YP_006531893.1| tRNA-dihydrouridine synthase A [Pseudomonas putida DOT-T1E]
gi|397330742|gb|AFO47101.1| tRNA-dihydrouridine synthase A [Pseudomonas putida DOT-T1E]
Length = 339
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 29 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 89 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 149 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 209 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 266
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 267 -VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLS 316
>gi|423112047|ref|ZP_17099741.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|423117437|ref|ZP_17105128.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
gi|376375372|gb|EHS88164.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5243]
gi|376375567|gb|EHS88353.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5245]
Length = 313
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLEEAKEHLEHMDGVMVGREAYQNPGILASVDREIFGVEGVDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VSVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 290
>gi|383457478|ref|YP_005371467.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
gi|380732639|gb|AFE08641.1| tRNA-dihydrouridine synthase A [Corallococcus coralloides DSM 2259]
Length = 337
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R I+R++ LYTEM TT A+L G + LDF EHP+A Q+G +EP
Sbjct: 20 MDWTDRHCRYFFRLISRHTLLYTEMVTTGAVLHGKRDRLLDFTPAEHPVALQLGGSEPAD 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 80 LAASARIGEEWGYDEINLNVGCPSDRVQSGRFGACLMAEPDLVARGVAAMREAVRIPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI IDD+ + + DFV VS+AGC FIVHAR A+L+ L+PK+NR +P L+Y+ V+
Sbjct: 140 KSRIAIDDMEEWPTLEDFVRRVSAAGCTRFIVHARKAWLQGLSPKENRDVPPLRYDLVHR 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK ++P L+I +NGGIKT HL +DGVM+GR Y++P+L+++ D ++ +
Sbjct: 200 LKAEYPHLDISLNGGIKTLDAAAEHLGRVDGVMMGRAPYESPYLLADADRRFFGGT---Q 256
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P TR ++++ M+ YI Q++ + +ITRHMLGL + + G+ +++ LS+
Sbjct: 257 APLTRHEVVDAMLPYIETQMSQG--APLGAITRHMLGLFQGLPGARAWRRHLSE 308
>gi|225075955|ref|ZP_03719154.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
gi|224952670|gb|EEG33879.1| hypothetical protein NEIFLAOT_00980 [Neisseria flavescens
NRL30031/H210]
Length = 319
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 210/312 (67%), Gaps = 10/312 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + A++ G+K L FN E P+A Q+G ++P
Sbjct: 2 LDWTDRHYRFMARQITRNTWLYSEMVNSGAVVYGDKDRFLSFNEGEQPVALQLGGSDPHD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK + +GY+E+NLNCGCPS RVQ G FGA LM LV+DC+ AM+D+VEI +TV
Sbjct: 62 LAIAAKAAETYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVADCLNAMQDAVEIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVG + CRT+IVHARNA+L L+PK+NR++P LKY +VY
Sbjct: 122 KHRIGVDRQTEYQVVADFVGMLREKTACRTYIVHARNAWLDGLSPKENREVPPLKYEYVY 181
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLP 236
LK++FP+LEI+INGGI T +EI HL ++DGVM+GREAY NP LM ++D +Y ++ P
Sbjct: 182 RLKQEFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPMLMRDWDARFYNDTHAP 241
Query: 237 -QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
QY D+ + Y R+Q+ + + + I RH LGLM ++K + ++++LS L
Sbjct: 242 IQYA-----DLAAWLYAYSREQIASGRGTILRHIVRHALGLMHSLKNARTWRRMLSDAAL 296
Query: 296 LTIDNFQFFLNT 307
L ++ L+
Sbjct: 297 LKDNDGSLILDA 308
>gi|254230410|ref|ZP_04923791.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
gi|151937069|gb|EDN55946.1| TIM-barrel protein, YjbN family [Vibrio sp. Ex25]
Length = 354
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 41 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 100
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 101 AKCAKLAQERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKGVVDIPVTVK 160
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 161 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 220
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 221 LKQDFSHLTIAINGGVKSLEEAKAHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 278
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 279 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 329
>gi|119476488|ref|ZP_01616839.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
gi|119450352|gb|EAW31587.1| Dihydrouridine synthase TIM-barrel protein yjbN [marine gamma
proteobacterium HTCC2143]
Length = 341
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/293 (51%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M +DRHCRMF RQ+T+++ +YTEM TT AIL L +N EHP+A Q+G + P
Sbjct: 14 MAWSDRHCRMFWRQLTQHAVMYTEMVTTGAILHAGADRFLTYNTGEHPLALQLGGSNPDD 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA KI +GYDE+NLNCGCPS+RVQNG FGA LM P V+DCI AM+D+ + ITV
Sbjct: 74 LASCTKIAADFGYDEVNLNCGCPSDRVQNGMFGACLMAHPQRVADCISAMQDASSLPITV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID++ SYD + +FV ++ GC TFIVHAR A+L+ L+PKQNR IP L Y+ V+
Sbjct: 134 KHRIGIDEMESYDEMLEFVKPIADTGCSTFIVHARKAWLQGLSPKQNRDIPPLHYDMVHQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L +IINGGI + + HL +DGVMLGR AY+NP+L++ D Y N P
Sbjct: 194 LKQDFPSLNVIINGGITSIEHCVSHLQLVDGVMLGRAAYQNPYLLAEVDSLIY-NAPTV- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I TR ++ I YI +QL NN +N +TRH+LGL + I G+ F++ +S+
Sbjct: 252 IKTRDQVLLDYIPYIEEQLQNNVA--LNHMTRHILGLFQGIPGAKLFRRHISE 302
>gi|292489772|ref|YP_003532662.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|292898020|ref|YP_003537389.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|428786747|ref|ZP_19004225.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
gi|291197868|emb|CBJ44967.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC 49946]
gi|291555209|emb|CBA23447.1| tRNA-dihydrouridine synthase A [Erwinia amylovora CFBP1430]
gi|426275016|gb|EKV52756.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ACW56400]
Length = 349
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+TR + LYTEM TT AI+ K L F++EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGDYLAFSSEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V + +TVK
Sbjct: 94 AQCAKLAERRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSVPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFMRTVSEQGGCEMFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+K+ E +HL ++DGVM+GREAY+NP L++ D +
Sbjct: 214 LKRDFPHLTLSINGGVKSLAEAKIHLQHLDGVMMGREAYQNPGLLAQVDRELFGCTSPSI 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I ++ M YI ++L + +TRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--IAVVRSMYPYIERELAGGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 322
>gi|261866807|ref|YP_003254729.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|416106965|ref|ZP_11590157.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444347209|ref|ZP_21155154.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412139|gb|ACX81510.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348005862|gb|EGY46331.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443540777|gb|ELT51304.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 327
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + +N P
Sbjct: 199 KRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQALFNANAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + + +M+ YI QQL+ +N I RH+L ++ KG+ ++++ LS+
Sbjct: 256 IVTPREAVEKMLPYIEQQLSRGVY--LNHIVRHILSAFQHCKGARQWRRYLSE 306
>gi|418465593|ref|ZP_13036527.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359755865|gb|EHK90027.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 328
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 201/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF++ E P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDSAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMANAALVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ +F+ T+ AGC+ FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCNFIETLQQAGCQEFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLLISINGGIKTLDEMQRHLQQVDGVMVGREAYQNPSLLGYIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + +M YI QQL+ +N I RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPRQAVEKMFPYIEQQLSQGVY--LNHIVRHMLGAFQHCKGARQWRRHLSE 306
>gi|401761830|ref|YP_006576837.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173364|gb|AFP68213.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 331
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRFFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLEHMDGVMVGREAYQNPGILATVDREIFGVDGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|312173953|emb|CBX82207.1| tRNA-dihydrouridine synthase A [Erwinia amylovora ATCC BAA-2158]
Length = 349
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+TR + LYTEM TT AI+ K L F +EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGDYLAFGSEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V + +TVK
Sbjct: 94 AQCAKLAERRGYQEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSVPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC FI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFMRTVSEQGGCEMFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+K+ E +HL ++DGVM+GREAY+NP L++ D +
Sbjct: 214 LKRDFPHLTLSINGGVKSLAEAKIHLQHLDGVMMGREAYQNPGLLAQVDRELFGCTSPSI 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I ++ M YI ++L + +TRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--IAVVRSMYPYIERELAGGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 322
>gi|399521008|ref|ZP_10761780.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399111497|emb|CCH38339.1| tRNA-dihydrouridine synthase A [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 391
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 204/292 (69%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q+G + P+
Sbjct: 81 MDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQLGGSNPQD 140
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D+V I +TV
Sbjct: 141 LATCAKMAEEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMQDAVNIPVTV 200
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 201 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 260
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D +
Sbjct: 261 LKQDFPDLEIILNGGIKTLEECEQHLQTFDGVMLGREAYHNPYLLAQVDSRLFGAADAGI 320
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR+D + + Y+ Q L ++ ++RH+LGL + G+ +F+Q+LS
Sbjct: 321 --TRMDALLALKPYVEQHLREG--GTLHHVSRHVLGLAQGFPGARRFRQLLS 368
>gi|148548779|ref|YP_001268881.1| tRNA-dihydrouridine synthase A [Pseudomonas putida F1]
gi|148512837|gb|ABQ79697.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas putida F1]
Length = 336
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEETGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 206 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 263
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 -VVSRSEALAQLRPYIVTHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLS 313
>gi|342904813|ref|ZP_08726611.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
gi|341952690|gb|EGT79213.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21621]
Length = 329
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|261210364|ref|ZP_05924658.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
gi|260840422|gb|EEX66988.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
Length = 335
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 206/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 21 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 81 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMRSVVDIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 141 TRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+DFP L I +NGG+KT +E LHL ++DGVM+GREAY++P+L++ D + + P
Sbjct: 201 IKRDFPHLTIAVNGGVKTLEEAKLHLQHLDGVMIGREAYQSPYLLAEVDQQIFELDTP-- 258
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 259 -VKKRSQVIHEMLPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 309
>gi|421727638|ref|ZP_16166798.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
gi|410371607|gb|EKP26328.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca M5al]
Length = 331
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y Y
Sbjct: 140 TRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPLFYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E LHL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMAINGGIKSLEEAKLHLEHMDGVMVGREAYQNPGILAAVDREIFGVDGVDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VSVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|33596533|ref|NP_884176.1| tRNA-dihydrouridine synthase A [Bordetella parapertussis 12822]
gi|410472643|ref|YP_006895924.1| hypothetical protein BN117_1983 [Bordetella parapertussis Bpp5]
gi|412338731|ref|YP_006967486.1| hypothetical protein BN112_1414 [Bordetella bronchiseptica 253]
gi|427815210|ref|ZP_18982274.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|33566302|emb|CAE37215.1| conserved hypothetical protein [Bordetella parapertussis]
gi|408442753|emb|CCJ49316.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|408768565|emb|CCJ53331.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
gi|410566210|emb|CCN23770.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 337
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 203/301 (67%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 14 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQLGGSEPDA 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 74 LAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPGLVADCMKAMQDAVDIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 134 KHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVARQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++ P +
Sbjct: 194 LKRDFPDCVIVLNGGLADAQAARAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW---PAIR 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M+ Y Q+ + +TR +LGL+ G+ +++++LS P L +
Sbjct: 251 LPSDAQVVDAMMQYAATQIARG--VPLRVMTRPLLGLVNGQAGARRWRRLLSDPVRLAAN 308
Query: 300 N 300
+
Sbjct: 309 D 309
>gi|410420715|ref|YP_006901164.1| hypothetical protein BN115_2933 [Bordetella bronchiseptica MO149]
gi|427819484|ref|ZP_18986547.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427825045|ref|ZP_18992107.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|408448010|emb|CCJ59689.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|410570484|emb|CCN18666.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410590310|emb|CCN05394.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 337
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 203/301 (67%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 14 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQLGGSEPDA 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 74 LAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPGLVADCMKAMQDAVDIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 134 KHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVARQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++ P +
Sbjct: 194 LKRDFPDCVIVLNGGLADAQAAQAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW---PAIR 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M+ Y Q+ + +TR +LGL+ G+ +++++LS P L +
Sbjct: 251 LPSDAQVVDAMMQYAATQIARG--VPLRVMTRPLLGLVNGQAGARRWRRLLSDPVRLAAN 308
Query: 300 N 300
+
Sbjct: 309 D 309
>gi|385873315|gb|AFI91835.1| TIM-barrel protein, yjbN family [Pectobacterium sp. SCC3193]
Length = 340
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ +EHP+A Q+G ++P L
Sbjct: 30 LDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEDEHPLALQLGGSDPTAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGI--DAV 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++ M YI ++L+ ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 APDLAGVVRAMYPYIERELSGG--ASLGHITRHMLGMFQGITGARQWRRYLSE 318
>gi|308051003|ref|YP_003914569.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
gi|307633193|gb|ADN77495.1| tRNA-U16,U17-dihydrouridine synthase [Ferrimonas balearica DSM
9799]
Length = 324
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R I+R + LYTEM TT AI+ K L FN EEHP+A Q+G + P L
Sbjct: 11 LDWTDRHYRYFARLISRQALLYTEMVTTGAIIHGKGDYLGFNEEEHPVALQLGGSNPADL 70
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+KAM+D V I +TVK
Sbjct: 71 AHCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVKAMQDVVSIPVTVK 130
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV+SAGC F +HAR A+L+ L+PK+NR+IP L Y+ Y +
Sbjct: 131 TRIGIDEQDSYEFLTRFIDTVASAGCDIFTIHARKAWLQGLSPKENREIPELIYDRAYQV 190
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DF L I +NGGI T ++ + HL ++DGVM+GREAY+NP++M+ D Y + +
Sbjct: 191 KRDFAHLNISVNGGITTLEQCEAHLQHLDGVMVGREAYQNPYMMAEVDQRLYGD--DRPV 248
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +++ +MI Y+ + ++N N +TRHMLGL + G+ ++++ L++
Sbjct: 249 LSRAEVVEQMIPYLERHISNG--GRANHVTRHMLGLFNGMPGARQWRRYLAQ 298
>gi|401678882|ref|ZP_10810835.1| DusA Protein [Enterobacter sp. SST3]
gi|400213867|gb|EJO44800.1| DusA Protein [Enterobacter sp. SST3]
Length = 313
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 182 LKRDFPHLTMSINGGIKSLEEAKAHLEHMDGVMVGREAYQNPGILATVDREIFGIEGADT 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|395444421|ref|YP_006384674.1| tRNA-dihydrouridine synthase A [Pseudomonas putida ND6]
gi|388558418|gb|AFK67559.1| tRNA-dihydrouridine synthase A [Pseudomonas putida ND6]
Length = 312
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 62 LAACARLAEETGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 122 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 182 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 240 -VVSRSEALAQLRPYIVTHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 290
>gi|383933677|ref|ZP_09987121.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
gi|383705283|dbj|GAB57212.1| tRNA-dihydrouridine synthase A [Rheinheimera nanhaiensis E407-8]
Length = 331
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 202/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR FHR ++R++ LYTEM TT AI+ L FN +EHP+ Q+G +EP ++
Sbjct: 17 LDWTDKHCRYFHRLLSRHAVLYTEMVTTGAIIHGSGDYLAFNEQEHPLVLQLGGSEPAEM 76
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYD +N+N GCPS+RVQNG FGA LM +P V+DC+KAM+D+V I +TVK
Sbjct: 77 AHCAKLAEQRGYDAVNINVGCPSDRVQNGMFGACLMAQPARVADCVKAMQDAVSIPVTVK 136
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD + Y F++DFV V++AGC FI+HAR A+LK L+PK+NR+IP L Y V L
Sbjct: 137 TRIGIDDSDDYQFLQDFVSMVAAAGCEQFIIHARKAWLKGLSPKENREIPPLNYPRVQQL 196
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K++FP+L I +NGGIKT ++ L Y+DGVM+GREAY NP L+S D Y++
Sbjct: 197 KQEFPQLNISLNGGIKTLQQAKEQLQYLDGVMVGREAYTNPLLLSEVDSLIYADTTLPLT 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ +M+ YI QQ+ I RHMLGL + G+ +++++LS+
Sbjct: 257 PEQ--VVLQMLPYIEQQMQQG--ARFWHIARHMLGLFQGRPGARQWRRLLSE 304
>gi|261822868|ref|YP_003260974.1| tRNA-dihydrouridine synthase A [Pectobacterium wasabiae WPP163]
gi|261606881|gb|ACX89367.1| TIM-barrel protein, yjbN family [Pectobacterium wasabiae WPP163]
Length = 340
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ +EHP+A Q+G ++P L
Sbjct: 30 LDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEDEHPLALQLGGSDPTAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCEFIQTVAGRGECDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGI--DAA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++ M YI ++L+ ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 EPDLAGVVRAMYPYIERELSGG--ASLGHITRHMLGMFQGITGARQWRRYLSE 318
>gi|52426107|ref|YP_089244.1| tRNA-dihydrouridine synthase A [Mannheimia succiniciproducens
MBEL55E]
gi|52308159|gb|AAU38659.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 327
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 206/293 (70%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+F+ E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTAPAIIHAKYDHLEFDPAENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+ VEI +TVK
Sbjct: 79 QHCAKLAEQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVAECVEKMQAEVEIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY F+ DF+ V S GC FIVHAR A+L L+PK+NR+IP L YN VY L
Sbjct: 139 TRIGIDNLDSYQFLCDFIQKVHSKGCNEFIVHARKAWLSGLSPKENREIPPLDYNRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP+L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + N P
Sbjct: 199 KRDFPQLSISINGGIKTIEEMTAHLQYVDGVMVGREAYQNPALLGQIDRALFDLNAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + + +M YI +QL+ ++N I RHMLG +N KG+ +++++LS+
Sbjct: 256 IVTPREAVEKMFPYIERQLSRG--VHLNHIVRHMLGAFQNCKGARQWRRLLSE 306
>gi|378775268|ref|YP_005177511.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
gi|356597816|gb|AET16542.1| tRNA-dihydrouridine synthase A [Pasteurella multocida 36950]
Length = 327
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 203/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVNAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DF L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFAHLHMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>gi|424811155|ref|ZP_18236471.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
gi|342321786|gb|EGU17587.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
Length = 316
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D + + P
Sbjct: 182 IKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVDQQIFGLDTP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|258625982|ref|ZP_05720847.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
gi|258581730|gb|EEW06614.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
Length = 339
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 25 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 85 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 145 TRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D + + P
Sbjct: 205 IKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVDQQIFGLDTP-- 262
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 263 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 313
>gi|330445027|ref|ZP_08308681.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493145|dbj|GAA03178.1| tRNA-dihydrouridine synthase A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 346
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 33 LDWTDRHCRYFHRIMSKEALLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNPIDL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ AMRD V+I +TVK
Sbjct: 93 ARCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGEAELVAQCVTAMRDVVDIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F++DF+ VS GC F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 153 TRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L + INGGIKT +E++ HL ++DGVM+GREAY++P+LMS D + S+ P
Sbjct: 213 LKQDFAHLTMAINGGIKTFEEMEEHLKHMDGVMVGREAYQSPYLMSEVDQRLFGSDRPVM 272
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
K R +++ M YI +QL N + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 273 K---RREVVEAMYPYIEKQLANGSY--LGHITRHMLGLFQNMPGARQWRRHISE 321
>gi|50122581|ref|YP_051748.1| tRNA-dihydrouridine synthase A [Pectobacterium atrosepticum
SCRI1043]
gi|49613107|emb|CAG76558.1| putative dihydrouridine synthase [Pectobacterium atrosepticum
SCRI1043]
Length = 340
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T + LYTEM TT AIL K L ++ EEHP+A Q+G ++P+ L
Sbjct: 30 LDWTDRHCRYFLRQLTSQTLLYTEMVTTGAILHGKGDYLAYSEEEHPLALQLGGSDPQAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDE+NLN GCPS+RVQNG FGA LM LV+DCIKAM+DS I ITVK
Sbjct: 90 AQCAKLAEQRGYDEVNLNVGCPSDRVQNGRFGACLMGDAALVADCIKAMKDSTSIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TV+ G C TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDDQDSYEFLCEFIQTVAERGECDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E +HL ++DGVM+GREAY+NP +++ D +
Sbjct: 210 LKRDFPALTIAINGGVKTLEEAKMHLQHLDGVMMGREAYQNPGILAQVDRELFG--IDAA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++ M YI ++L+ + ++ ITRHMLG+ + I G+ ++++ LS+
Sbjct: 268 TQDLAGVVRSMYPYIERELSGD--ASLGHITRHMLGMFQGIPGARQWRRYLSE 318
>gi|416181733|ref|ZP_11611738.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M13399]
gi|325134929|gb|EGC57561.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M13399]
Length = 336
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+I +TV
Sbjct: 79 LAKAAKAAEVYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVKIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|33601086|ref|NP_888646.1| tRNA-dihydrouridine synthase A [Bordetella bronchiseptica RB50]
gi|33575521|emb|CAE32599.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 337
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 203/301 (67%), Gaps = 6/301 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + + LYTEM TT A+L G+ LDF+A EHP+A Q+G +EP
Sbjct: 14 IDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQLGGSEPDA 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 74 LAQAARLGRQWGYDEINLNCGCPSERVQRGAFGACLMAEPGLVADCMKAMQDAVDIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 134 KHRLGLDYDESYGFVRDFVGQIYDTGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVARQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ I++NGG+ + DGVMLGR A+ P ++S L ++ P +
Sbjct: 194 LKRDFPDCVIVLNGGLADAQAARAVAGEFDGVMLGRAAWHTPRVLSEVSLQWW---PAIR 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P+ +++ M+ Y Q+ + +TR +LGL+ G+ +++++LS P L +
Sbjct: 251 LPSDAQVVDAMMQYAATQIARG--VPLRVMTRPLLGLVNGQAGARRWRRLLSDPVRLAAN 308
Query: 300 N 300
+
Sbjct: 309 D 309
>gi|258622397|ref|ZP_05717420.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
gi|258585311|gb|EEW10037.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
Length = 339
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 25 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 85 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 145 TRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D + + P
Sbjct: 205 IKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVDQQIFGLDTP-- 262
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 263 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 313
>gi|423126869|ref|ZP_17114548.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
gi|376396338|gb|EHT08979.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5250]
Length = 313
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E LHL ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLEEAKLHLAHMDGVMVGREAYQNPGILASVDREIFGVEGVDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ + YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VSVVRAIYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 290
>gi|429093448|ref|ZP_19156041.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
gi|426741682|emb|CCJ82154.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
Length = 331
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DFVGT + GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDEQDSYEFLCDFVGTAAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
L++DFP+L + INGGIKT +E HL ++DGVM+GREAY+NP L+++ D + + N P
Sbjct: 200 LRRDFPQLTMSINGGIKTLEEAKAHLEHMDGVMVGREAYQNPGLLASVDRDIFGLNTPDA 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L++ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 D---PVAVVRAMYPYIERELSDGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|108761431|ref|YP_630504.1| tRNA-dihydrouridine synthase A [Myxococcus xanthus DK 1622]
gi|108465311|gb|ABF90496.1| tRNA-dihydrouridine synthase A [Myxococcus xanthus DK 1622]
Length = 332
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDR+CR FHRQ++R++ LYTEM TT AIL G+++ L ++A EHP+A Q+G +EP
Sbjct: 15 MDWTDRNCRYFHRQLSRHTLLYTEMVTTGAILHGDRERLLGYDAAEHPVALQLGGSEPAA 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 75 LAESARIGEQWGYDEINLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAVSIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + F+ VS+AGC FIVHAR A+L+ L+PK+NR +P L+Y+ V+
Sbjct: 135 KSRIAIDELEEWPTLEGFIRKVSAAGCTRFIVHARKAWLQGLSPKENRDVPPLRYDLVHR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP L+I INGGIKT L ++DGVM+GR Y+NP+L++ D ++
Sbjct: 195 LKVEFPHLDISINGGIKTLDAAAEQLRHVDGVMMGRAPYENPYLLAEADRRFFGA--TTP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R +++ M+ YI + + + +ITRHMLGL + + G+ +++ LS+
Sbjct: 253 VPQRHEVVEAMLPYIEKAMLRG--APLGAITRHMLGLFQGLPGARAWRRHLSE 303
>gi|416051235|ref|ZP_11577333.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993253|gb|EGY34627.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 311
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 2 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDLAEQPVALQLGGSDPAQL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ Y EINLN GCPS+RVQNG FGA LM LV++C++ M+++V I +TVK
Sbjct: 62 KHCAQLAEQRDYQEINLNVGCPSDRVQNGMFGACLMANAALVAECVQQMQEAVRIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ +F+ TV AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 122 TRIGIDDFDSYDFLCNFIETVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + P I
Sbjct: 182 KRDFPHLLISINGGIKTLDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQTLFD--PNAPI 239
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + +M YI QQL+ +N I RHMLG ++ KG+ ++++ LS+
Sbjct: 240 VTPRQAVEKMFPYIEQQLSQGVY--LNHIVRHMLGAFQHCKGARQWRRHLSE 289
>gi|422807140|ref|ZP_16855571.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
gi|324112315|gb|EGC06293.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
Length = 333
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 3/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L LNPK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLNPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++S D +++
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKMHLQHMDGVMVGREAYQNPGILSAVDREIFASTDTDT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 310
>gi|145639381|ref|ZP_01794986.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
gi|145271428|gb|EDK11340.1| hypothetical protein CGSHiII_04387 [Haemophilus influenzae PittII]
Length = 327
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KHDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|386013006|ref|YP_005931283.1| TRNA-dihydrouridine synthase A [Pseudomonas putida BIRD-1]
gi|313499712|gb|ADR61078.1| TRNA-dihydrouridine synthase A [Pseudomonas putida BIRD-1]
Length = 312
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 62 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 122 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIK+ E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 182 LKRDFPDLEIVLNGGIKSLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 240 -VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 290
>gi|365966626|ref|YP_004948188.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416089350|ref|ZP_11587907.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349254|ref|ZP_21156747.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348009398|gb|EGY49552.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365745539|gb|AEW76444.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443545071|gb|ELT54935.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 327
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + +N P
Sbjct: 199 KRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQALFNANAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + + +M+ YI QQL+ +N I RH+L ++ KG+ ++++ LS+
Sbjct: 256 IVTPREAVEKMLPYIEQQLSRGVY--LNHIVRHILSAFQHCKGALQWRRYLSE 306
>gi|256821809|ref|YP_003145772.1| yjbN family TIM-barrel protein [Kangiella koreensis DSM 16069]
gi|256795348|gb|ACV26004.1| TIM-barrel protein, yjbN family [Kangiella koreensis DSM 16069]
Length = 330
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 144/277 (51%), Positives = 201/277 (72%), Gaps = 5/277 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F R IT+++ LYTEM TT AI+ G + L FN EEHP+A Q+G ++PK
Sbjct: 15 LDWTDRHQRRFMRLITKHAVLYTEMITTGAIIHGGAERHLKFNQEEHPVAVQLGGSDPKD 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AKI + +GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM + V++ +TV
Sbjct: 75 LAHCAKICEDFGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECMSAMANVVDVPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+++SY+ + F+ TV SAG +TFI+HAR A+L L+PKQNR+IP L+Y+ Y
Sbjct: 135 KSRIGIDELDSYEHLHHFINTVQSAGVKTFIIHARKAWLSGLSPKQNREIPPLRYDIAYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+KKDFPELEII+NGG+ T + + H+ + DGVM+GREAY NP+ ++ D +Y Y
Sbjct: 195 VKKDFPELEIIVNGGVNTLDQAEDHMKHADGVMIGREAYHNPYFLAEVDNRFYGK--DYD 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGL 276
IP+RI+I ++YI+ QL+ + + +TRH+LGL
Sbjct: 253 IPSRIEIAREYMVYIQSQLDQDVY--LGHMTRHILGL 287
>gi|329296553|ref|ZP_08253889.1| TIM-barrel protein, yjbN family [Plautia stali symbiont]
Length = 331
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+ + LYTEM TT AI+ K L ++ EHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLGGDTLLYTEMVTTGAIIHGKGDYLAYSEAEHPLALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 76 ATCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMRDVVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DFVGTV+ GC TFI+HAR A+L L+PK+N +IP L Y VY
Sbjct: 136 TRIGIDDQDSYAFLCDFVGTVAQQGGCDTFIIHARKAWLSGLSPKENSEIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 196 LKRDFPALTVAINGGIKTLDEAKAHLQHLDGVMMGREAYQNPGILAQVDRQLFGR--ETP 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + ++ M YI +L + ITRHMLGL + I G+ ++++ LS+
Sbjct: 254 VADPVAVVRSMYPYIEVELAQGTY--LGHITRHMLGLFQGIPGARQWRRHLSE 304
>gi|417823509|ref|ZP_12470103.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
gi|340048480|gb|EGR09400.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
Length = 316
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 182 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|421180047|ref|ZP_15637617.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa E2]
gi|404546077|gb|EKA55140.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa E2]
Length = 332
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 210/312 (67%), Gaps = 7/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+R + + R+ YI + + + ++ +TRH+LGL + GS +F+Q+LS +
Sbjct: 262 ---SRSEALLRLRPYIER--HQTEGGAMHHVTRHILGLAQGFPGSRRFRQLLSVDVHKAV 316
Query: 299 DNFQFFLNTLNI 310
D + F L +
Sbjct: 317 DPLRVFDQALEL 328
>gi|332289875|ref|YP_004420727.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
gi|330432771|gb|AEC17830.1| tRNA-dihydrouridine synthase A [Gallibacterium anatis UMN179]
Length = 326
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L ++ +E P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRFFHRQFSRHTLLYTEMVTAPAIIYAKYDHLLYHPQELPLALQLGGSDPQQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A A + ++ GY E+NLN GCPS+RVQNGFFGA LM K LV+ CI AM+ + I +TVK
Sbjct: 79 ADCAALAEQRGYSEVNLNVGCPSDRVQNGFFGACLMAKADLVAQCIDAMQQRINIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ DFV V++ GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCDFVEKVAAVGCQDFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L+I INGGIKT +EI HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPQLKIAINGGIKTIEEIQQHLQYVDGVMVGREAYQNPQLLGYIDQALFD--PNAAI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T ++ + +M YI ++L + +ITRHMLG +N +G+ ++++ LS+
Sbjct: 257 VTPLEAVEKMFPYIERELQQG--VPLGAITRHMLGAFQNQRGARQWRRYLSE 306
>gi|424044986|ref|ZP_17782557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
gi|408887165|gb|EKM25800.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HENC-03]
Length = 315
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + L
Sbjct: 2 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNAADL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 62 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 182 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHISRHMLGLFQNMPGARQWRRHISE 290
>gi|386742972|ref|YP_006216151.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
gi|384479665|gb|AFH93460.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
Length = 327
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L F+ EE P+A Q+G ++P+ L
Sbjct: 16 LDWTDRHCRYFHRLLSKNTLLYTEMVTTGAIIHGKGDYLAFSEEEQPVALQLGGSDPEAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM+D V I +TVK
Sbjct: 76 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMQDVVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ TVS+ GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDEQDSYEFLCDFIDTVSTKGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT +E HL ++DGVM+GREAY+NP +++ D + + Q
Sbjct: 196 LKRDFPHLTMAINGGIKTLEEAKEHLRHLDGVMVGREAYQNPSILTAVDNQLFDS--QLP 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +D + +M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 254 VVNAVDAVRQMFPYIEKELSQGTY--LGHITRHMLGIFQGIPGARQWRRYLSE 304
>gi|291086669|ref|ZP_06356403.2| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
gi|291067402|gb|EFE05511.1| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
Length = 313
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIVHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 62 AQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD++SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDLDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYARVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D ++
Sbjct: 182 LKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFAAATHDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + +TRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIERELSQGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 290
>gi|188025481|ref|ZP_02958806.2| hypothetical protein PROSTU_00565 [Providencia stuartii ATCC 25827]
gi|188023335|gb|EDU61375.1| tRNA dihydrouridine synthase A [Providencia stuartii ATCC 25827]
Length = 336
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L F+ EE P+A Q+G ++P+ L
Sbjct: 25 LDWTDRHCRYFHRLLSKNTLLYTEMVTTGAIIHGKGDYLAFSEEEQPVALQLGGSDPEAL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM+D V I +TVK
Sbjct: 85 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMQDVVSIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ TVS+ GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 145 TRIGIDEQDSYEFLCDFIDTVSTKGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT +E HL ++DGVM+GREAY+NP +++ D + + Q
Sbjct: 205 LKRDFPHLTMAINGGIKTLEEAKEHLRHLDGVMVGREAYQNPSILTAVDNQLFDS--QLP 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +D + +M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 263 VVNAVDAVRQMFPYIEKELSQGTY--LGHITRHMLGIFQGIPGARQWRRYLSE 313
>gi|402845185|ref|ZP_10893528.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
gi|402271761|gb|EJU20998.1| tRNA dihydrouridine synthase A [Klebsiella sp. OBRC7]
Length = 332
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLEEAKQHLAHMDGVMVGREAYQNPGILASVDREIFGVEGIDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VSVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|148826732|ref|YP_001291485.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229847414|ref|ZP_04467514.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|148716892|gb|ABQ99102.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae PittEE]
gi|229809652|gb|EEP45378.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 7P49H1]
gi|309751771|gb|ADO81755.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2866]
Length = 327
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+ K+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSAKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQLN ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLNQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|451984987|ref|ZP_21933220.1| tRNA dihydrouridine synthase A [Pseudomonas aeruginosa 18A]
gi|451757317|emb|CCQ85743.1| tRNA dihydrouridine synthase A [Pseudomonas aeruginosa 18A]
Length = 312
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 209/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 2 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 62 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 182 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 241
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 242 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 295
Query: 298 IDNFQFFLNTLNI 310
+D + F L +
Sbjct: 296 VDPLRVFDQALEL 308
>gi|262401531|ref|ZP_06078098.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
gi|262352246|gb|EEZ01375.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
Length = 316
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQDRGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYSRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+DFP L I +NGG+KT +E LHL ++DGVM+GREAY++P+L++ D + + P
Sbjct: 182 IKRDFPHLTIAVNGGVKTLEEAKLHLQHLDGVMIGREAYQSPYLLAEVDQQIFGLDTP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|416075623|ref|ZP_11585114.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337443|ref|ZP_21151419.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006108|gb|EGY46572.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443546925|gb|ELT56512.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 327
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVATQAIIHAKYDHLDFDPAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + +N P
Sbjct: 199 KRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQALFNANAP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I T + + +M+ YI QQL+ +N I RH+L ++ KG+ ++++ LS+
Sbjct: 256 IVTPREAVEKMLPYIEQQLSRGVY--LNHIVRHILSAFQHCKGARQWRRYLSE 306
>gi|419958727|ref|ZP_14474788.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606395|gb|EIM35604.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 331
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAHLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGIKSLDEAKAHLEHMDGVMVGREAYQNPGILATVDREIFGVEGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L++ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSHGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|423118069|ref|ZP_17105753.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
gi|376402402|gb|EHT14996.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
Length = 332
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E LHL ++DGVM+GREAY+NP +++ D ++
Sbjct: 201 LKRDFPHLTMAINGGIKSLEEAKLHLQHMDGVMVGREAYQNPGILTAVDREIFAVDGADS 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|421350237|ref|ZP_15800604.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
gi|395954959|gb|EJH65565.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
Length = 316
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRAVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 182 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|359779400|ref|ZP_09282627.1| tRNA-dihydrouridine synthase A [Pseudomonas psychrotolerans L19]
gi|359372016|gb|EHK72580.1| tRNA-dihydrouridine synthase A [Pseudomonas psychrotolerans L19]
Length = 312
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P +
Sbjct: 2 MDWTDRHCRYFHRLLSQHALLYTEMVTTGALLHGDAQRFLRHDETEHPLALQLGGSVPAE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +A++ ++ GYDEINLN GCPS+RVQN GA LM P V+D +KAMRD+V I +TV
Sbjct: 62 LAAAARLGEQAGYDEINLNVGCPSDRVQNNMIGACLMAYPERVADSVKAMRDAVAIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI +SYD +RDFVG V+ AGCR+F VHAR A L+ L+PKQNR+IP L+Y+
Sbjct: 122 KHRIGISGRDSYDALRDFVGQVAEAGCRSFTVHARIAILEGLSPKQNREIPPLRYDVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
L +DFP+LE I+NGGIKT L DGVMLGREAY+NP+L++ D Y + PQ
Sbjct: 182 LVQDFPDLEFILNGGIKTLDTCREQLEVFDGVMLGREAYQNPYLLAEVDAALYGCDRPQQ 241
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR D++ ++ Y+ L + I+ +TRH+LGL + G+ +F+Q+LS
Sbjct: 242 ---TRHDVMLQLRPYVEAHLQQGGL--IHHVTRHILGLAQGFPGARRFRQLLS 289
>gi|260583380|ref|ZP_05851150.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
gi|260093566|gb|EEW77484.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae NT127]
Length = 327
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYTRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVRSMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>gi|405363402|ref|ZP_11026356.1| tRNA dihydrouridine synthase A [Chondromyces apiculatus DSM 436]
gi|397089810|gb|EJJ20709.1| tRNA dihydrouridine synthase A [Myxococcus sp. (contaminant ex DSM
436)]
Length = 344
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDR+CR FHR ++R++ LYTEM TT A++ G++ L ++A EHP+A Q+G +EP+
Sbjct: 28 MDWTDRNCRYFHRLLSRHTLLYTEMVTTGAVIHGDRDRLLGYDAAEHPVALQLGGSEPEA 87
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMRD+V I +TV
Sbjct: 88 LAESARIGEQWGYDEINLNVGCPSDRVQSGRFGACLMAEPELVARLVGAMRDAVNIPVTV 147
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + F+ TVS+AGC FIVHAR A+L+ L+P++NR +P L+Y+ V+
Sbjct: 148 KSRIAIDELEEWPTLEGFIRTVSAAGCTRFIVHARKAWLQGLSPRENRDVPPLRYDLVHR 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP L+I INGGIKT L ++DGVM+GR Y+NP+L++ D ++
Sbjct: 208 LKAEFPHLDISINGGIKTLDAAAEQLQHVDGVMMGRAPYENPYLLAEADRRFFGA--TTP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R +++ M+ YI + + + +ITRHMLGL + + G+ +++ LS+
Sbjct: 266 VPQRHEVVEAMLPYIEKA--RGRGAPLGAITRHMLGLFQGLPGARAWRRHLSE 316
>gi|365101882|ref|ZP_09332486.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
gi|363646657|gb|EHL85894.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
Length = 332
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D +S +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFSAATEDT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIEREL--SKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|423105940|ref|ZP_17093641.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
gi|376379248|gb|EHS92002.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5242]
Length = 313
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYAFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLEEAKQHLAHMDGVMVGREAYQNPGILASVDREIFGVEGIDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VSVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 290
>gi|375258454|ref|YP_005017624.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|397655399|ref|YP_006496101.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
gi|365907932|gb|AEX03385.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca KCTC 1686]
gi|394344113|gb|AFN30234.1| tRNA dihydrouridine synthase A [Klebsiella oxytoca E718]
Length = 332
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AHCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYGFLCDFIETVSVKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLEEAKQHLAHMDGVMVGREAYQNPGILASVDREIFGVEGIDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VSVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|443471636|ref|ZP_21061697.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|443473202|ref|ZP_21063227.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|442901737|gb|ELS27526.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
gi|442903765|gb|ELS29056.1| tRNA dihydrouridine synthase A [Pseudomonas pseudoalcaligenes
KF707]
Length = 312
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 201/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R + LYTEM TT A+L G+++ L + EHP+A Q+G + P+
Sbjct: 2 MDWTDRHCRFFLRQLSRQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSVPQD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 62 LAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMLDAVEIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR+IP L+Y
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCQSFTVHARIAILEGLSPKENREIPPLRYEVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT E HL + DGVMLGREAY NP+L++ D + S+ P
Sbjct: 182 LKQDFPDLEIILNGGIKTLDECRAHLEHFDGVMLGREAYHNPYLLAEVDAALFGSDTPPI 241
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
R + + + YI + L + ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 242 G---RAEALEAIRPYIERHLREGGV--MHHITRHVLGLAQGFPGARRFRQLLS 289
>gi|90021133|ref|YP_526960.1| tRNA-dihydrouridine synthase A [Saccharophagus degradans 2-40]
gi|89950733|gb|ABD80748.1| TIM-barrel protein, yjbN family [Saccharophagus degradans 2-40]
Length = 331
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/289 (51%), Positives = 202/289 (69%), Gaps = 5/289 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ +D+HCR F RQ+T+ S LYTEM T AI+ G+++ L FN EHPIA QVG ++P
Sbjct: 21 MDWSDKHCRYFWRQLTKKSRLYTEMVVTGAIIHGDRERFLQFNNAEHPIALQVGGSDPAA 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I Q WGYDEINLNCGCPS+RVQNG GAILM+KP LV++CI AM+ + +I +TV
Sbjct: 81 LAQCARIAQDWGYDEINLNCGCPSDRVQNGMIGAILMSKPELVAECIDAMQKACDIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ Y+ + +FV TV+ GC TFIVHAR A+LK L+PK+NR+IP L+Y+ V
Sbjct: 141 KHRIGIDDMEDYEALSNFVTTVAQTGCNTFIVHARKAWLKGLSPKENREIPPLRYDLVVQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKK FP L I+INGGI ++ LN +DGVM+GREAY NPF +++ D + P
Sbjct: 201 LKKAFPHLNIVINGGINCLEQAKTLLNDLDGVMIGREAYHNPFFLADVDQKLFGT-PNPS 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQ 288
R +++++ I Y QQ N ++ ++RH+LGL KG+ F++
Sbjct: 260 -ANRHEVLDKFIHYAEQQ--NAAGTRLHHMSRHILGLYLGQKGARAFRR 305
>gi|15640406|ref|NP_230033.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121590952|ref|ZP_01678272.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121729744|ref|ZP_01682184.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|147675235|ref|YP_001218647.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O395]
gi|153820423|ref|ZP_01973090.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|153823513|ref|ZP_01976180.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|153827262|ref|ZP_01979929.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|153830467|ref|ZP_01983134.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|227080591|ref|YP_002809142.1| tRNA-dihydrouridine synthase A [Vibrio cholerae M66-2]
gi|227116785|ref|YP_002818681.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229504962|ref|ZP_04394473.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229508600|ref|ZP_04398096.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229516011|ref|ZP_04405462.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229526966|ref|ZP_04416363.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229606339|ref|YP_002876987.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254286198|ref|ZP_04961157.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|254851689|ref|ZP_05241039.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|298501275|ref|ZP_07011073.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|360037019|ref|YP_004938782.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740257|ref|YP_005332226.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|418331085|ref|ZP_12942036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|418347786|ref|ZP_12952523.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|421327606|ref|ZP_15778123.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|424025899|ref|ZP_17765520.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
gi|38605061|sp|Q9KUX9.1|DUSA_VIBCH RecName: Full=tRNA-dihydrouridine synthase A
gi|9654797|gb|AAF93552.1| NifR3/Smm1 family protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547178|gb|EAX57305.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121628529|gb|EAX61013.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|126509034|gb|EAZ71628.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|126518958|gb|EAZ76181.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|146317118|gb|ABQ21657.1| TIM-barrel protein, yjbN family [Vibrio cholerae O395]
gi|148874069|gb|EDL72204.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|149738810|gb|EDM53152.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|150423613|gb|EDN15555.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|227008479|gb|ACP04691.1| NifR3/Smm1 family protein [Vibrio cholerae M66-2]
gi|227012235|gb|ACP08445.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229335578|gb|EEO01058.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229346914|gb|EEO11881.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229354368|gb|EEO19295.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229358020|gb|EEO22936.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229368994|gb|ACQ59417.1| tRNA dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254847394|gb|EET25808.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|297540029|gb|EFH76092.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|356421741|gb|EHH75232.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|356448253|gb|EHI01033.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|356648173|gb|AET28228.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793767|gb|AFC57238.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|395933128|gb|EJH43870.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|408881554|gb|EKM20431.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
Length = 327
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|269961484|ref|ZP_06175848.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
gi|269833861|gb|EEZ87956.1| NifR3/Smm1 family protein [Vibrio harveyi 1DA3]
Length = 369
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + L
Sbjct: 56 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNAADL 115
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 116 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 175
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 176 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 235
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 236 LKKDFSHLTIAINGGVKSLEEAKDHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 293
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 294 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHISRHMLGLFQNMPGARQWRRHISE 344
>gi|347822203|ref|ZP_08875637.1| tRNA-dihydrouridine synthase A [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 319
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 198/294 (67%), Gaps = 8/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ TDRHCR FHR +TR + LYTEM A++ G ++H L F+AEEHP+A Q+G ++P
Sbjct: 7 MDWTDRHCRYFHRLLTRRTRLYTEMLHAGAVIHGGTERH-LRFHAEEHPVALQLGGSDPA 65
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
LA++A++ +WGYDEINLNCGCPS RVQ G FGA LM P V+DCI+AM+D V++ +T
Sbjct: 66 DLARAARLGAQWGYDEINLNCGCPSERVQRGAFGASLMKAPQRVADCIRAMQDQVDVPVT 125
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIG+D Y FVRDFVGT++ AGC FIVHARNA+L+ L+PK+NR +P L+Y V+
Sbjct: 126 VKHRIGVDRQEDYGFVRDFVGTLTDAGCNVFIVHARNAWLQGLSPKENRDVPPLRYAVVH 185
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
L+ DFP + + INGG+ + + L +DGVM+GR AY NP+ ++ +D Y+ P
Sbjct: 186 RLRADFPGITLAINGGMDSDALVQEQLRALDGVMVGRAAYHNPWWLARWDALYHGGEP-- 243
Query: 239 KIP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P TR + M+ Y+ ++ + I RHMLGL + G+ ++Q+ S
Sbjct: 244 -CPLTRDGVELAMLQYMEREAARHGTP-WPHIARHMLGLRHGLPGARLWRQVWS 295
>gi|296100676|ref|YP_003610822.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055135|gb|ADF59873.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 331
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGIKSLDEAKTHLAHMDGVMVGREAYQNPGILTTVDREIFGVEGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|254241250|ref|ZP_04934572.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126194628|gb|EAZ58691.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 332
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 209/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGNPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F+VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFMVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>gi|421167072|ref|ZP_15625287.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 700888]
gi|404535891|gb|EKA45549.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 700888]
Length = 334
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 24 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 84 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 144 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 204 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 263
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 264 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 317
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 318 ADPLRVFDQALEL 330
>gi|255747176|ref|ZP_05421119.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262147248|ref|ZP_06028049.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262166864|ref|ZP_06034586.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262190629|ref|ZP_06048865.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|384423684|ref|YP_005633042.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|417811453|ref|ZP_12458115.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|417815223|ref|ZP_12461859.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|417819263|ref|ZP_12465881.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|418336243|ref|ZP_12945143.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|418342624|ref|ZP_12949426.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|418356574|ref|ZP_12959291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|419824849|ref|ZP_14348357.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|419835325|ref|ZP_14358771.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|421315620|ref|ZP_15766193.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|421319164|ref|ZP_15769724.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|421323199|ref|ZP_15773729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|421330603|ref|ZP_15781086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|421334200|ref|ZP_15784671.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|421338101|ref|ZP_15788541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|421341907|ref|ZP_15792315.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|421348846|ref|ZP_15799220.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|421356363|ref|ZP_15806692.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|422305806|ref|ZP_16392994.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|422890417|ref|ZP_16932844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|422901216|ref|ZP_16936596.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|422905402|ref|ZP_16940261.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|422912122|ref|ZP_16946653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|422921629|ref|ZP_16954842.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|422924600|ref|ZP_16957641.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|423143649|ref|ZP_17131268.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|423148632|ref|ZP_17135995.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|423152408|ref|ZP_17139626.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|423155207|ref|ZP_17142347.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|423159066|ref|ZP_17146041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|423163743|ref|ZP_17150541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|423729763|ref|ZP_17703086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|423733686|ref|ZP_17706903.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|423746985|ref|ZP_17711274.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|423891595|ref|ZP_17725288.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|423926371|ref|ZP_17729905.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|423946111|ref|ZP_17733325.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|423975254|ref|ZP_17736873.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|424000926|ref|ZP_17744020.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|424005086|ref|ZP_17748075.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|424007916|ref|ZP_17750872.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|424022881|ref|ZP_17762549.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|424589656|ref|ZP_18029104.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|424593901|ref|ZP_18033245.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|424597835|ref|ZP_18037038.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|424600600|ref|ZP_18039760.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|424605516|ref|ZP_18044485.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|424609233|ref|ZP_18048097.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|424612151|ref|ZP_18050963.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|424616029|ref|ZP_18054725.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|424620789|ref|ZP_18059321.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|424643609|ref|ZP_18081368.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|424651529|ref|ZP_18089058.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|424655476|ref|ZP_18092784.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|429885245|ref|ZP_19366841.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|440712312|ref|ZP_20892935.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443502428|ref|ZP_21069422.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443506335|ref|ZP_21073134.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443510171|ref|ZP_21076844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443514007|ref|ZP_21080553.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443517820|ref|ZP_21084244.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443522402|ref|ZP_21088653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443529332|ref|ZP_21095350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443534069|ref|ZP_21099993.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443536739|ref|ZP_21102598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|449054390|ref|ZP_21733058.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
gi|255735225|gb|EET90627.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262024694|gb|EEY43373.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262031308|gb|EEY49921.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262033494|gb|EEY51996.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|327483237|gb|AEA77644.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|340042793|gb|EGR03757.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|340044179|gb|EGR05133.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|340045270|gb|EGR06215.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|341625864|gb|EGS51287.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|341627287|gb|EGS52606.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|341627856|gb|EGS53147.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|341641404|gb|EGS65957.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|341648380|gb|EGS72441.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|341648777|gb|EGS72812.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|356422305|gb|EHH75783.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|356426972|gb|EHH80250.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|356433419|gb|EHH86609.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|356434893|gb|EHH88056.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|356438189|gb|EHH91237.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|356443560|gb|EHH96380.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|356450670|gb|EHI03386.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|356451375|gb|EHI04062.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|356456564|gb|EHI09160.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|395922886|gb|EJH33700.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|395924059|gb|EJH34869.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|395925938|gb|EJH36731.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|395934998|gb|EJH45734.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|395937960|gb|EJH48666.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|395939138|gb|EJH49822.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|395946601|gb|EJH57263.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|395946630|gb|EJH57291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|395949073|gb|EJH59706.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|395964169|gb|EJH74408.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|395964343|gb|EJH74572.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|395967285|gb|EJH77382.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|395975825|gb|EJH85300.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|395979547|gb|EJH88895.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|408010284|gb|EKG48152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|408017232|gb|EKG54749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|408036766|gb|EKG73185.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|408037651|gb|EKG74036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|408045146|gb|EKG81011.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|408047091|gb|EKG82746.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|408057830|gb|EKG92664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|408611999|gb|EKK85350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|408627872|gb|EKL00664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|408628064|gb|EKL00841.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|408631968|gb|EKL04480.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|408643238|gb|EKL14972.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|408659229|gb|EKL30282.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|408660151|gb|EKL31177.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|408662188|gb|EKL33157.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|408666288|gb|EKL37083.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|408849421|gb|EKL89440.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|408849877|gb|EKL89877.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|408859105|gb|EKL98772.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|408867001|gb|EKM06364.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|408874802|gb|EKM13969.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|429227961|gb|EKY33916.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|439972085|gb|ELP48390.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443433213|gb|ELS75729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443437045|gb|ELS83153.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443440877|gb|ELS90557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443444697|gb|ELS97964.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443448535|gb|ELT05163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443451593|gb|ELT11846.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443459900|gb|ELT27293.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443462762|gb|ELT33789.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443467741|gb|ELT42396.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|448266183|gb|EMB03413.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
Length = 316
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 182 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|334123884|ref|ZP_08497898.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|333389862|gb|EGK61018.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
Length = 331
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V + +TVK
Sbjct: 80 AQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAHLVADCIKAMRDVVSVPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGI + E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGITSLDEAKAHLEHMDGVMVGREAYQNPGILATVDREIFGVEGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|449146249|ref|ZP_21777038.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
gi|449078095|gb|EMB49040.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
Length = 327
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 204/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++CI AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECIAAMRSVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K++FP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D + + P
Sbjct: 193 IKRNFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVDQQIFGLDTP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|116050795|ref|YP_790384.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14]
gi|254235779|ref|ZP_04929102.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|421174014|ref|ZP_15631749.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CI27]
gi|115586016|gb|ABJ12031.1| putative TIM-barrel protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126167710|gb|EAZ53221.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|404535063|gb|EKA44776.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CI27]
Length = 332
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>gi|365846158|ref|ZP_09386663.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
gi|364574270|gb|EHM51735.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
Length = 332
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINTVSGHGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++ D ++
Sbjct: 201 LKRDFPHLTMAINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGMLTAVDREIFAA--SAA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 259 DPDPVAVVRAMYPYIERELSNGTY--LGHMTRHMLGLFQGIPGARQWRRYLSE 309
>gi|417792931|ref|ZP_12440235.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|429117008|ref|ZP_19177926.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449306619|ref|YP_007438975.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
gi|333952990|gb|EGL70988.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|426320137|emb|CCK04039.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449096652|gb|AGE84686.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
Length = 331
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D + ++P
Sbjct: 200 LKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPDA 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 D---PVAVVRAMYPYIEREL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|49088070|gb|AAT51528.1| PA2795, partial [synthetic construct]
Length = 333
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>gi|329896416|ref|ZP_08271515.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC3088]
gi|328921836|gb|EGG29207.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC3088]
Length = 319
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/311 (46%), Positives = 210/311 (67%), Gaps = 6/311 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M +DRHCR F R I + LYTEM TT A+L G+K + LDF+ EHP+A Q+G NEP
Sbjct: 2 MEWSDRHCRYFWRLIAPQALLYTEMVTTGALLFGDKPYHLDFHDSEHPVALQLGGNEPDA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ Q+WGYDE+NLNCGCPS+RVQ+G FGA LM +P VS C++AMR++ ++ +TV
Sbjct: 62 LARCAELAQQWGYDEVNLNCGCPSDRVQSGGFGAYLMGEPKTVSACVQAMRNATDLPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GID +SY+ + +FV TV+ AGCR F+VHAR A+LK L+PKQNR IP L Y +VY
Sbjct: 122 KHRLGIDHQDSYEELLEFVQTVAEAGCRHFVVHARKAWLKGLSPKQNRDIPPLNYEWVYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ PEL I+INGGI +E HL ++DGVM+GREAY +P+ + + +
Sbjct: 182 LKQTLPELTIVINGGITQPQECVEHLQHVDGVMIGREAYYHPWHLRAISEAVFG---KQN 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+ ++ +I+ M+ Y ++QL K +N +TRH++ + +G+ +F++ LS+
Sbjct: 239 LLSQPEIMTEMVRYSKEQL--EKGVKLNHVTRHLINFYQGCRGAKQFRRYLSENAHRPGA 296
Query: 300 NFQFFLNTLNI 310
N Q ++ L +
Sbjct: 297 NEQILVDALAL 307
>gi|424658273|ref|ZP_18095531.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
gi|408055444|gb|EKG90374.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
Length = 316
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLNYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 182 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|343495972|ref|ZP_08734079.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
gi|342821813|gb|EGU56579.1| tRNA-dihydrouridine synthase A [Vibrio nigripulchritudo ATCC 27043]
Length = 323
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 10 LDWTDRHCRYFHRLMSDNALLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNPADL 69
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR+ V++ +TVK
Sbjct: 70 ATCAKLAQDRGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMREVVDVPVTVK 129
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 130 TRIGIDDQDSYEFLTDFVSVVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 189
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+KKDFP L I INGGIKT +E HL ++DGVM+GREAY++P+++++ D + +
Sbjct: 190 IKKDFPNLTIAINGGIKTLEEAKAHLQHLDGVMIGREAYQSPYILASVDQELFGS--DKS 247
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R DI+ M YI ++L +K + +TRHMLGL +++ G+ ++++ +S+
Sbjct: 248 IKKRSDIVRAMYPYIEKEL--SKGTYLGHMTRHMLGLFQSMPGARQWRRYISE 298
>gi|262163875|ref|ZP_06031615.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
gi|262027855|gb|EEY46520.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
Length = 335
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 21 LDWTDRHCRYFHRLLSSQALLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 81 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 141 TRIGIDDQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+D P L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D + + P
Sbjct: 201 IKRDLPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVDQQIFGLDTP-- 258
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 259 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 309
>gi|294634339|ref|ZP_06712877.1| tRNA dihydrouridine synthase A [Edwardsiella tarda ATCC 23685]
gi|451967317|ref|ZP_21920561.1| tRNA-dihydrouridine synthase A [Edwardsiella tarda NBRC 105688]
gi|291092236|gb|EFE24797.1| tRNA dihydrouridine synthase A [Edwardsiella tarda ATCC 23685]
gi|451313872|dbj|GAC65923.1| tRNA-dihydrouridine synthase A [Edwardsiella tarda NBRC 105688]
Length = 345
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHP+A Q+G + P L
Sbjct: 33 LDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEQEHPLALQLGGSNPADL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 93 ARCAALAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+GTV+ G C TFIVHAR A+L L+PK+NR++P L Y VY
Sbjct: 153 TRIGIDEQDSYAFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPKENREVPPLDYPRVYR 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I INGG+K+ E HL ++DGVM+GREAY NP +++ D +
Sbjct: 213 LKQDFPQLTIAINGGVKSLAEAQAHLCHVDGVMVGREAYHNPGMLAQVDRQLFDATA--A 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P I ++ + YI ++L + ITRH+LGL + I G+ ++++ LS+
Sbjct: 271 VPDSIAVVRALYPYIERELAQGTY--LGHITRHILGLFQGIPGARQWRRHLSE 321
>gi|15597991|ref|NP_251485.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PAO1]
gi|218891014|ref|YP_002439880.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa LESB58]
gi|416860673|ref|ZP_11914362.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 138244]
gi|421153773|ref|ZP_15613310.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|38605052|sp|Q9I048.1|DUSA_PSEAE RecName: Full=tRNA-dihydrouridine synthase A
gi|9948878|gb|AAG06183.1|AE004707_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|218771239|emb|CAW27004.1| putative TIM-barrel protein [Pseudomonas aeruginosa LESB58]
gi|334837366|gb|EGM16131.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 138244]
gi|404523202|gb|EKA33642.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 14886]
gi|453045439|gb|EME93158.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PA21_ST175]
Length = 332
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>gi|320335164|ref|YP_004171875.1| hypothetical protein [Deinococcus maricopensis DSM 21211]
gi|319756453|gb|ADV68210.1| TIM-barrel protein, yjbN family [Deinococcus maricopensis DSM
21211]
Length = 340
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR ITR++ LYTEM TT AIL G++ L F+ +EHP+A Q+G ++P
Sbjct: 18 LDWTDRHCRAFHRLITRHTLLYTEMITTGAILHGDEARHLSFSPQEHPVALQLGGSDPVA 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+ + +GY E+NLN GCPS+RVQNG FGA LM P +V+ ++AMR + + +TV
Sbjct: 78 LAECARRAEGYGYAEVNLNVGCPSDRVQNGRFGACLMATPDVVARGVEAMRGATGLPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV+ AGC TFIVHAR A+L L+PK+NR+IP L+Y V
Sbjct: 138 KHRIGIDDLDSYELLTAFVRTVADAGCETFIVHARKAWLSGLSPKENREIPPLRYEVVRQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L ++NGG+K+ E + HL +DGVM+GREAY NP+L++ D + + +
Sbjct: 198 LKMDFPQLTFVLNGGVKSLDEAETHLRSVDGVMIGREAYGNPYLLALADARLFGD--AHV 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+PTR +++ +I Y + L + ++ +T+H LGL G+ +K+ +S+
Sbjct: 256 VPTRREVVEGLIGYAEEMLARDVY--LSRVTKHALGLFAGQAGARGWKRTISE 306
>gi|338533471|ref|YP_004666805.1| tRNA-dihydrouridine synthase A [Myxococcus fulvus HW-1]
gi|337259567|gb|AEI65727.1| tRNA-dihydrouridine synthase A [Myxococcus fulvus HW-1]
Length = 332
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDR+CR FHR ++R++ LYTEM TT A+L G+++ L ++A EHP+A Q+G +EP
Sbjct: 15 MDWTDRNCRYFHRLLSRHTLLYTEMVTTGAVLHGDRERLLGYDAAEHPVALQLGGSEPAA 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA+I ++WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 75 LAESARIGEQWGYDEINLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAVSIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + F+ VS+AGC FIVHAR A+L+ L+P++NR +P L+Y+ V+
Sbjct: 135 KSRIAIDELEEWPTLEGFIRKVSAAGCTRFIVHARKAWLQGLSPRENRDVPPLRYDLVHR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP L+I INGGIKT L ++DGVM+GR Y+NP+L++ D ++
Sbjct: 195 LKAEFPHLDISINGGIKTLDAAAEQLQHVDGVMMGRAPYENPYLLAEADRRFFGA--TTP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R D++ M+ YI + + + +ITRHMLGL + + G+ +++ LS+
Sbjct: 253 VPQRHDVVEAMLPYIEKAMLRG--APLGAITRHMLGLFQGLPGARAWRRHLSE 303
>gi|387769798|ref|ZP_10125995.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
gi|386905968|gb|EIJ70718.1| tRNA dihydrouridine synthase A [Pasteurella bettyae CCUG 2042]
Length = 325
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 206/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ E+P+A Q+G ++P++L
Sbjct: 17 LDWTTRHCRYFHRQFSQHALLYTEMVTAPAIIYAKYDHLDFDLSENPVALQLGGSDPEQL 76
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ Q+ GY E+NLN GCPS+RVQNG FGA LM K LV++C+++M+ V+I +TVK
Sbjct: 77 QHCAKLAQERGYTEVNLNVGCPSDRVQNGMFGACLMAKSDLVAECVESMQKVVDIPVTVK 136
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ +F+ V + GC FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 137 TRIGIDELDSYEFLCEFIEKVHAKGCNEFIVHARKAWLSGLSPKENREIPPLNYERVYQL 196
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L+I INGGIKT +EI HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 197 KRDFPQLKISINGGIKTIEEILTHLQYVDGVMVGREAYQNPSLLGKIDQALFD--PNAPI 254
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M+ YI QQL+ +N I RHMLG +N KG+ ++++ LS+
Sbjct: 255 ITAREAVEKMLPYIEQQLSQGIF--LNHIARHMLGAFQNCKGARQWRRHLSE 304
>gi|350529472|ref|ZP_08908413.1| tRNA-dihydrouridine synthase A [Vibrio rotiferianus DAT722]
Length = 326
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPADL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 73 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKSVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + + K
Sbjct: 193 LKQDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGSTAPVK 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R +I+ M YI QL K + I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 253 --KRSEIVEEMYPYIEAQL--AKGAYLGHISRHMLGLFQNMPGARQWRRHISE 301
>gi|296388726|ref|ZP_06878201.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PAb1]
gi|416872857|ref|ZP_11917021.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 152504]
gi|334845585|gb|EGM24146.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa 152504]
Length = 332
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>gi|90581341|ref|ZP_01237137.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
gi|90437451|gb|EAS62646.1| putative NifR3/Smm1 family protein [Photobacterium angustum S14]
Length = 346
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 33 LDWTDRHCRYFHRLMSKEALLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPIDL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ AMRD V+I +TVK
Sbjct: 93 ARCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGEAELVAQCVTAMRDVVDIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F++DF+ VS GC F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 153 TRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIKT +E++ HL ++DGVM+GREAY++P+LM+ D + + +
Sbjct: 213 LKQDFAHLTMAINGGIKTFEEMEEHLKHMDGVMVGREAYQSPYLMAEVDQRLFGS--ERP 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +++ M YI +QL N + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 271 VMKRREVVEAMYPYIEKQLANGSY--LGHITRHMLGLFQSMPGARQWRRHISE 321
>gi|395798542|ref|ZP_10477826.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Ag1]
gi|395337277|gb|EJF69134.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. Ag1]
Length = 331
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ S LYTEM TT AIL G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKNSLLYTEMVTTGAILHGDHERFLRHNEAEHPLALQLGGSVPAD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAM+D+V I +TV
Sbjct: 81 LAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMQDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYAELCDFVGQVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEII+NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 201 LKQDFPELEIILNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI + L +++ ITRH LGL G+ KF+Q+LS
Sbjct: 259 VITRAEALAQLRPYIAEHLATG--GSMHHITRHALGLGTGFPGARKFRQLLS 308
>gi|145638041|ref|ZP_01793669.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
gi|145268759|gb|EDK08734.1| hypothetical protein CGSHiHH_03013 [Haemophilus influenzae PittHH]
Length = 327
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>gi|146309919|ref|YP_001174993.1| tRNA-dihydrouridine synthase A [Enterobacter sp. 638]
gi|145316795|gb|ABP58942.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter sp. 638]
Length = 331
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+D IKAMRD V I +TVK
Sbjct: 80 AECAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADGIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFIDTVAGKGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKTHLQHMDGVMVGREAYQNPGILATVDREIFGIEGADS 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|429118938|ref|ZP_19179683.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
gi|426326596|emb|CCK10420.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
Length = 331
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D + ++P
Sbjct: 200 LKRDFPKLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPDT 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 D---PVAVVRAMYPYIEREL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|16272577|ref|NP_438794.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae Rd KW20]
gi|260581551|ref|ZP_05849356.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
gi|1176344|sp|P44794.1|DUSA_HAEIN RecName: Full=tRNA-dihydrouridine synthase A
gi|1573630|gb|AAC22293.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260091796|gb|EEW75754.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae RdAW]
Length = 327
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>gi|392983490|ref|YP_006482077.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa DK2]
gi|418588208|ref|ZP_13152223.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa MPAO1/P1]
gi|418590071|ref|ZP_13153987.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa MPAO1/P2]
gi|419752926|ref|ZP_14279330.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PADK2_CF510]
gi|421517323|ref|ZP_15963997.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PAO579]
gi|375041108|gb|EHS33827.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa MPAO1/P1]
gi|375051165|gb|EHS43637.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa MPAO1/P2]
gi|384400048|gb|EIE46407.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PADK2_CF510]
gi|392318995|gb|AFM64375.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa DK2]
gi|404346805|gb|EJZ73154.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa PAO579]
Length = 311
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 1 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 61 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 121 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 181 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 240
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 241 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 294
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 295 ADPLRVFDQALEL 307
>gi|392977169|ref|YP_006475757.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323102|gb|AFM58055.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 331
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVAGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGIKSLDEAKTHLAHMDGVMVGREAYQNPGILATVDREIFGVEGADS 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|107102337|ref|ZP_01366255.1| hypothetical protein PaerPA_01003399 [Pseudomonas aeruginosa PACS2]
gi|313107930|ref|ZP_07794099.1| hypothetical protein PA39016_001190015 [Pseudomonas aeruginosa
39016]
gi|386058231|ref|YP_005974753.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa M18]
gi|386066811|ref|YP_005982115.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa NCGM2.S1]
gi|424942132|ref|ZP_18357895.1| putative TIM-barrel protein [Pseudomonas aeruginosa NCMG1179]
gi|310880601|gb|EFQ39195.1| hypothetical protein PA39016_001190015 [Pseudomonas aeruginosa
39016]
gi|346058578|dbj|GAA18461.1| putative TIM-barrel protein [Pseudomonas aeruginosa NCMG1179]
gi|347304537|gb|AEO74651.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa M18]
gi|348035370|dbj|BAK90730.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa NCGM2.S1]
Length = 312
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 2 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 62 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 182 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 241
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 242 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 295
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 296 ADPLRVFDQALEL 308
>gi|145642466|ref|ZP_01798016.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|145272834|gb|EDK12730.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 22.4-21]
Length = 327
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>gi|330503878|ref|YP_004380747.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
gi|328918165|gb|AEB58996.1| tRNA-dihydrouridine synthase A [Pseudomonas mendocina NK-01]
Length = 312
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 203/292 (69%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A++ G+++ L ++ EHPIA Q+G + P+
Sbjct: 2 MDWTDRHCRFFLRQLSRHALLYTEMVTTGALIHGDRERFLRYSECEHPIALQLGGSNPQD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D+V I +TV
Sbjct: 62 LATCTKMAEEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMQDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y+
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+LEII+NGGIKT +E + HL DGVMLGREAY NP+L++ D +
Sbjct: 182 LKQDFPDLEIILNGGIKTIEECEQHLQSFDGVMLGREAYHNPYLLAQVDSRLFGTADTGI 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR++ + + Y+ Q L ++ ++RH+LGL + G+ +F+Q+LS
Sbjct: 242 --TRMEALLALKPYVEQHLREG--GTLHHVSRHVLGLAQGFPGARRFRQLLS 289
>gi|398876360|ref|ZP_10631517.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM67]
gi|398204765|gb|EJM91561.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM67]
Length = 339
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 29 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA+LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGAVLMGHPQLVADCVKAMRDAVSIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 149 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 209 LKKDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 267 VITRAQALAQLRPYIAAHIDAG--GSMHHITRHVLGLGSGFPGARKFRQLLS 316
>gi|237728132|ref|ZP_04558613.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
gi|226910143|gb|EEH96061.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
Length = 331
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D ++ +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFAATTEDT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIEREL--SKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|15806701|ref|NP_295421.1| tRNA-dihydrouridine synthase A [Deinococcus radiodurans R1]
gi|6459466|gb|AAF11254.1|AE002011_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 333
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCRMFHR +TR + LYTEM TT AIL G++ LDF+A EHP+A Q+G ++
Sbjct: 17 MDWTDRHCRMFHRTLTRRTLLYTEMVTTGAILHGDQGRHLDFSAPEHPLALQLGGSDAAA 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ + WGYDE+NLNCGCPS+RV +G FGA LM P +V+ ++AMR + + +TV
Sbjct: 77 LAECARLAEDWGYDEVNLNCGCPSDRVSSGSFGACLMGTPDVVARAVEAMRAATRLPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV++AGC FIVHAR A+L L+PK+NR+IP L+Y V
Sbjct: 137 KHRIGIDDLDSYEHLTGFVRTVAAAGCEQFIVHARKAWLSGLSPKENREIPPLRYEVVQQ 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L +++NGG+K+ E L + DGVM+GR AY+ P+L++ D + + Q
Sbjct: 197 LKADFPQLTVVLNGGVKSLTEAQQALAWADGVMIGRAAYQEPYLLAAADRDVFGEDAQAV 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R + I + Y+ Q+ + +N + +H LGL G+ +K+ LS+
Sbjct: 257 --SRREAIEAYLPYVAAQVEAG--QPLNRMMKHTLGLFAGQPGARHWKRTLSE 305
>gi|343499074|ref|ZP_08737071.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|418479481|ref|ZP_13048562.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342823463|gb|EGU58091.1| tRNA dihydrouridine synthase A [Vibrio tubiashii ATCC 19109]
gi|384572880|gb|EIF03385.1| tRNA dihydrouridine synthase A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 333
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N +EH +A Q+G + P+ L
Sbjct: 20 LDWTDRHCRYFHRLLTSETLLYTEMVTTGAIIHGKGDFLAYNQQEHSVALQLGGSNPQDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMRD V++ +TVK
Sbjct: 80 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVSAMRDVVDVPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 140 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDF L I INGG+KT +E HL ++DGVM+GREAY+NP++++N D + + P
Sbjct: 200 LKKDFSHLTIAINGGVKTLEESKEHLQHLDGVMVGREAYQNPYILANVDQEIFGLDKP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QQL+ + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 258 -VKKRSQVVEEMYPYIEQQLSQGAY--LGHITRHMLGLFQNMPGARQWRRYISE 308
>gi|421847475|ref|ZP_16280612.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771129|gb|EKS54842.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 332
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D ++ +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFAAATEDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIEREL--SKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|422908913|ref|ZP_16943571.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
gi|341637207|gb|EGS61896.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
Length = 316
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIDTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 182 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|229525073|ref|ZP_04414478.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
gi|229338654|gb|EEO03671.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
Length = 327
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPAALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|283787222|ref|YP_003367087.1| tRNA-dihydrouridine synthase A [Citrobacter rodentium ICC168]
gi|282950676|emb|CBG90350.1| putative tRNA-dihydrouridine synthase A [Citrobacter rodentium
ICC168]
Length = 345
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 34 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSGEEHPLALQLGGSDPAQL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMR++V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRNTVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFIDTVSGHGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 214 LKRDFPHLTMSINGGIKSLAEAKAHLEHMDGVMVGREAYQNPGILASVDREIFGVDSPDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|429101989|ref|ZP_19163963.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
gi|426288638|emb|CCJ90076.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
Length = 331
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSDEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP L+++ D +
Sbjct: 200 LKRDFPQLTMSINGGIKTLDDVKAHLAHMDGVMVGREAYQNPGLLASVDREIFGLDTPDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIEGEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|398883738|ref|ZP_10638687.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM60]
gi|398196122|gb|EJM83139.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM60]
Length = 312
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSRHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA+LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGAVLMGHPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 122 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 182 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 240 VITRAQALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 289
>gi|94499718|ref|ZP_01306255.1| Dihydrouridine synthase TIM-barrel protein yjbN [Bermanella
marisrubri]
gi|94428472|gb|EAT13445.1| Dihydrouridine synthase TIM-barrel protein yjbN [Oceanobacter sp.
RED65]
Length = 330
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/295 (50%), Positives = 202/295 (68%), Gaps = 7/295 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNKKHCLDFNAEEHPIAFQVGDNEP 57
M+ +D HCR+F R +++ ++LYTEM TT A++ G + + EEHP+A Q+G + P
Sbjct: 19 MDWSDSHCRLFWRTLSKDAFLYTEMVTTGALIHGDGGPDRFIRYRDEEHPVALQLGGSNP 78
Query: 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI 117
K LA+ AKI Q +GYDE+NLN GCPS+RVQN GA LM P LV+DCIKAM+D+VEI +
Sbjct: 79 KDLAQCAKIAQDFGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCIKAMQDAVEIPV 138
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
TVKHRIGIDD +SY+ + FV TV++ GC TFI+H R A L L+PK+NR+IP L+Y V
Sbjct: 139 TVKHRIGIDDQDSYEHLHHFVDTVAATGCETFIIHGRKAILDGLSPKENREIPPLRYEVV 198
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
+K+D P+LE+I+NGGIKT KE HL + DGVMLGREAY NP ++ + D YY + PQ
Sbjct: 199 QQIKQDLPQLEVILNGGIKTHKEATEHLKWADGVMLGREAYHNPSVLMDVDALYYGHEPQ 258
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
K + D I + +I L +K ++ +TRH+LGL GS F++ LS+
Sbjct: 259 TK--DKKDCIRALYPHIEDHL--SKGFKLSYVTRHILGLFNGQPGSRLFRRHLSE 309
>gi|386266637|ref|YP_005830129.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
gi|309973873|gb|ADO97074.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R2846]
Length = 327
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 203/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
R GID+++SY+F+ DF+ V GC+ FI+HAR A+L L+ K+NR+IP L Y VY L
Sbjct: 139 TRTGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSAKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQLN ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLNQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|170769561|ref|ZP_02904014.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
gi|170121618|gb|EDS90549.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
Length = 331
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL Y+DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMAINGGIKSLEEAKAHLQYMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|455644996|gb|EMF24086.1| tRNA-dihydrouridine synthase A [Citrobacter freundii GTC 09479]
Length = 332
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D ++ +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFAAATEDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIEREL--SKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|229845624|ref|ZP_04465749.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
gi|229811424|gb|EEP47128.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae 6P18H1]
Length = 327
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>gi|297582262|ref|ZP_06944177.1| TIM-barrel protein [Vibrio cholerae RC385]
gi|297533520|gb|EFH72366.1| TIM-barrel protein [Vibrio cholerae RC385]
Length = 327
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLG+ +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGVFQNMPGARQWRRHISE 301
>gi|260599558|ref|YP_003212129.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
gi|260218735|emb|CBA34083.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
Length = 349
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 38 LDWTDRHCRYFLRQLSSQALLYTEMVTTGAIIHGKGDYLAYSDEEHPVALQLGGSDPAAL 97
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 98 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 157
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 158 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 217
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP L+++ D +
Sbjct: 218 LKRDFPQLTMSINGGIKTLDDVKAHLAHMDGVMVGREAYQNPGLLASVDREIFGLDTPDA 277
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI + K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 278 DP--VAVVRAMYPYIEGE--RAKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 326
>gi|417846290|ref|ZP_12492299.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
gi|341952774|gb|EGT79293.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21639]
Length = 327
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T HCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTLHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKANLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLSQG--IHLNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|404398748|ref|ZP_10990332.1| tRNA-dihydrouridine synthase A [Pseudomonas fuscovaginae UPB0736]
Length = 331
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 202/292 (69%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+++ L +NA EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRYFLRLLSKHTLLYTEMVTTGAILHGDRERFLRYNASEHPLALQLGGSVPAD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARLAEDAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVG V AGC +F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 141 KHRIGINGRDSYEALCDFVGQVREAGCGSFTVHARIAILEGLSPKENREIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 201 LKQDFPELEIVLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + + Y+ + + + ++ +TRH+LGL G+ +F+Q+LS
Sbjct: 259 VLSRAEALALLRPYVAEHIASGGA--MHHVTRHVLGLGTGFPGARRFRQLLS 308
>gi|325267704|ref|ZP_08134355.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
gi|324980828|gb|EGC16489.1| tRNA dihydrouridine synthase A [Kingella denitrificans ATCC 33394]
Length = 383
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 209/310 (67%), Gaps = 5/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR++WLYTEM AI+ G+ L N E+P+A Q+G +EP
Sbjct: 64 LDWTDRHYRYMARQITRHTWLYTEMVNAGAIVFGDPDRFLARNECENPVALQLGGSEPNL 123
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LA++A+ ++GYDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+D+ + +T
Sbjct: 124 LAQAARKAAEYGYDEINLNCGCPSPRVQKGAFGACLMLDAPLVADCLNAMQDAAPDTAVT 183
Query: 119 VKHRIGIDDINSYDFVRDFVG-TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIGID Y + DFVG V CRTF+VHARNA+L L+PK+NR++P L+Y V
Sbjct: 184 VKHRIGIDRQTEYAPLADFVGHLVRHTPCRTFVVHARNAWLDGLSPKENREVPPLRYELV 243
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y LK++FP+LEIIINGGI+T ++I LHL ++DGVM+GREAY NPF+M ++D +Y +
Sbjct: 244 YRLKQEFPDLEIIINGGIRTNEDIALHLQHVDGVMVGREAYHNPFVMHDWDRLFYRE--K 301
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P R +I+ R+ Y +QQL+ N+ + + RH LGL+ + + ++++LS +LL
Sbjct: 302 QPAPERDEIVQRLYEYAQQQLSKNQGTILRHMARHYLGLLHGLPKARVWRRMLSDADLLR 361
Query: 298 IDNFQFFLNT 307
+ + L
Sbjct: 362 PNRPELILQA 371
>gi|218551359|ref|YP_002385151.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
gi|218358901|emb|CAQ91560.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
Length = 331
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++ D +++
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKMHLQHMDGVMVGREAYQNPGILAAVDREIFASTDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|374291353|ref|YP_005038388.1| tRNA-dihydrouridine synthase A [Azospirillum lipoferum 4B]
gi|357423292|emb|CBS86142.1| tRNA-dihydrouridine synthase A [Azospirillum lipoferum 4B]
Length = 335
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 202/293 (68%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R + LYTEM TT A+L G+++ L F+A EHP+A Q+G ++P
Sbjct: 14 MDWTDRHCRYFHRLLSRSTLLYTEMVTTGAVLHGDRERLLGFDAAEHPVALQLGGSDPAD 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I ++WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I +TV
Sbjct: 74 LAACARIAEEWGYDEVNLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAVSIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + F+ TVS+AGC FIVHAR A+LK L+PK+NR IP L+Y+ V+
Sbjct: 134 KSRIAIDEMEEWPTLDQFIRTVSAAGCSHFIVHARKAWLKGLSPKENRDIPPLRYDLVHR 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK ++P+L I INGGI+T E + HL +D VM+GR AY+ P+L+++ D P
Sbjct: 194 LKAEYPQLTIAINGGIRTLDEAEEHLGKVDSVMIGRAAYETPYLLADADRRLMGGEPG-- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P R +I M+ YI ++ ++SITRHMLGL + + G+ +++ +++
Sbjct: 252 -PDRHAVIEAMLPYIEARMALG--TPLSSITRHMLGLFQGLPGARAYRRHIAE 301
>gi|424818607|ref|ZP_18243758.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
gi|325499627|gb|EGC97486.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
Length = 331
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNMLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYSRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP +++ D +++
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKMHLQHMDGVMVGREAYQNPGILAAVDREIFASTDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|153216666|ref|ZP_01950573.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
gi|124114177|gb|EAY32997.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
Length = 327
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ MR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVATMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|395231244|ref|ZP_10409536.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|424731198|ref|ZP_18159785.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
gi|394715022|gb|EJF20892.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|422894384|gb|EKU34197.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
Length = 332
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AQCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINTVSGNGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E +HL ++DGVM+GREAY+NP ++++ D ++ +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKIHLQHMDGVMVGREAYQNPGILASVDREIFAATTEDT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIEREL--SKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|383816678|ref|ZP_09972071.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
gi|383294485|gb|EIC82826.1| yjbN family TIM-barrel protein [Serratia sp. M24T3]
Length = 351
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L F ++EHP+A Q+G + P+ L
Sbjct: 34 LDWTDRHCRHFHRLMSREALLYTEMVTTGAIIHGKGDYLAFGSQEHPVALQLGGSNPQDL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A A++ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 94 ATCARLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQAALVADGIKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC TFI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFVQQVSERGGCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGIK+ ++ HL ++DGVM+GREAY+NP ++ + D + + Q
Sbjct: 214 LKRDFPHLTIAINGGIKSLEDAKQHLQHMDGVMIGREAYQNPSMLLDVDRELFGS--QSP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T ++I + YI +L+N + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 272 VLTGPEVIRALYPYIESELSNGTY--LGHITRHILGIFQGIPGARQWRRHLSE 322
>gi|417844182|ref|ZP_12490243.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
gi|341947567|gb|EGT74214.1| tRNA-dihydrouridine synthase A [Haemophilus haemolyticus M21127]
Length = 329
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T +I+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPSIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPYLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLSQG--IHLNHIVRHMLGAFQHCKGARQWRRYLSE 306
>gi|429106337|ref|ZP_19168206.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
gi|426293060|emb|CCJ94319.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
Length = 331
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC++AMRD V I +TVK
Sbjct: 80 AHCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVRAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D + ++P
Sbjct: 200 LKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPDA 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 D---PVAVVRAMYPYIEGEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|295095415|emb|CBK84505.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 331
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAHLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGI + E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGITSLDEAKAHLEHMDGVMVGREAYQNPGILATVDREIFGVDGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L++ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSHGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|251788352|ref|YP_003003073.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
gi|247536973|gb|ACT05594.1| TIM-barrel protein, yjbN family [Dickeya zeae Ech1591]
Length = 344
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++++ LYTEM TT AIL K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRLLSQHALLYTEMVTTGAILHGKGDYLAYSDEEHPLALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR+ V I +TVK
Sbjct: 94 AQCALLAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAQLVADCVAAMRERVGIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS GC TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFIRTVSEQGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT + HL ++DGVM+GREAY+NP +++ D +
Sbjct: 214 LKRDFPSLTVAINGGIKTLADAQQHLQHVDGVMVGREAYQNPGMLAQVDSELFGV--DRA 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P ++ ++ M YI ++L+ ++ ITRHMLGL + I G+ ++++ LS+
Sbjct: 272 VPDQVAVVQAMYPYIERELSGG--ASLGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|431801645|ref|YP_007228548.1| tRNA-dihydrouridine synthase A [Pseudomonas putida HB3267]
gi|430792410|gb|AGA72605.1| tRNA-dihydrouridine synthase A [Pseudomonas putida HB3267]
Length = 336
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L N H L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKNTLLYTEMVTTGALLHNDAHRFLRHDVSEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + + +
Sbjct: 206 LKADFPDLEIVLNGGIKTLAECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGS--EAA 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 314
>gi|260773671|ref|ZP_05882587.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
gi|260612810|gb|EEX38013.1| tRNA-dihydrouridine synthase [Vibrio metschnikovii CIP 69.14]
Length = 335
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 199/294 (67%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP++ Q+G + P L
Sbjct: 21 LDWTDRHCRYFHRLLTSQTLLYTEMVTTGAIIHGKGDFLTYNQEEHPVSLQLGGSNPTDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMR+ V+I +TVK
Sbjct: 81 AHCAKLAQDRGYDEINLNVGCPSDRVQNGKFGACLMAEPQLVADCVAAMREVVDIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 141 TRIGIDDQDSYEFLTRFVQLVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP L I INGG+K+ E+ HL ++DGVM+GREAY+NP+L++ D + + P
Sbjct: 201 LKQDFPHLTIAINGGVKSLTEVLDHLQHLDGVMVGREAYQNPYLLAEADQQIFGLDKP-- 258
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI QQL + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 259 -IKKRSQVVQEMYPYIEQQLTQGAY--LGHITRHMLGLFQSMPGARQWRRYISE 309
>gi|145629754|ref|ZP_01785549.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|145632012|ref|ZP_01787761.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
gi|144977993|gb|EDJ87777.1| hypothetical protein CGSHi22121_00292 [Haemophilus influenzae
22.1-21]
gi|144982331|gb|EDJ89920.1| tRNA-dihydrouridine synthase A [Haemophilus influenzae R3021]
Length = 327
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ V+I +TVK
Sbjct: 79 KYCARLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQGVVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYARVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVQSMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>gi|366158984|ref|ZP_09458846.1| tRNA-dihydrouridine synthase A [Escherichia sp. TW09308]
gi|432374629|ref|ZP_19617655.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
gi|430893024|gb|ELC15372.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
Length = 331
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|422972569|ref|ZP_16975396.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
gi|371597806|gb|EHN86625.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
Length = 345
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L +N EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYNEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|288550133|ref|ZP_05969393.2| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
gi|288316334|gb|EFC55272.1| tRNA-dihydrouridine synthase A [Enterobacter cancerogenus ATCC
35316]
Length = 313
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSDEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+D IKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADSIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLCDFIDTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 182 LKRDFPHLTMSINGGIKSLEEAKTHLAHMDGVMVGREAYQNPGILATVDREIFGVEGADT 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VSVVRAMYPYIERELSNGTW--LGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|389839414|ref|YP_006341498.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
gi|387849890|gb|AFJ97987.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
Length = 331
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAEQGGCDIFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D + N+P
Sbjct: 200 LKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGFNVPDA 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 D---PVAVVRAMYPYIEGEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|440289524|ref|YP_007342289.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440049046|gb|AGB80104.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 331
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVAGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKTHLQHMDGVMVGREAYQNPGILATVDREIFGVEGADT 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|429111836|ref|ZP_19173606.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
gi|426312993|emb|CCJ99719.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
Length = 331
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 206/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ +EHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEQEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC++AMRD V I +TVK
Sbjct: 80 AQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVRAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D + ++P
Sbjct: 200 LKRDFPQLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPDA 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 260 D---PVAVVRAMYPYIEGEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 308
>gi|153803249|ref|ZP_01957835.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229519914|ref|ZP_04409345.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
gi|124121229|gb|EAY39972.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-3]
gi|229343042|gb|EEO08029.1| tRNA dihydrouridine synthase A [Vibrio cholerae TM 11079-80]
Length = 327
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + P L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPNDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|293417553|ref|ZP_06660175.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
gi|291430271|gb|EFF03269.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
Length = 345
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + + Y
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGS--SYT 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 272 DADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|260779457|ref|ZP_05888347.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604266|gb|EEX30570.1| tRNA dihydrouridine synthase A [Vibrio coralliilyticus ATCC
BAA-450]
Length = 315
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 2 LDWTDRHCRYFHRLLTSETLLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +PLLV++C+ AMRD V++ +TVK
Sbjct: 62 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPLLVAECVAAMRDVVDVPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS G F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGSDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDF L I INGG+KT + HL ++DGVM+GREAY+NP++++ D + + P
Sbjct: 182 LKKDFAHLNIAINGGVKTLDDTKEHLTHLDGVMVGREAYQNPYILAEVDQQIFGLDKP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QL K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRTQVVQEMYPYIESQL--EKGAYLGHITRHMLGLFQNMPGARQWRRYISE 290
>gi|56752036|ref|YP_172737.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 6301]
gi|81300875|ref|YP_401083.1| tRNA-dihydrouridine synthase A [Synechococcus elongatus PCC 7942]
gi|56686995|dbj|BAD80217.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169756|gb|ABB58096.1| TIM-barrel protein, yjbN family [Synechococcus elongatus PCC 7942]
Length = 343
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F RQI+R + LYTEM QAI G++ LD++ +EHP+A QVG + P+
Sbjct: 25 LDRTDRHCRYFLRQISRRTLLYTEMIVAQAIQYGDRARLLDYDPQEHPVALQVGGDNPQW 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I + WGYDEINLN GCPS+RVQ G FGA LM +P V+ C++AMR + + +TV
Sbjct: 85 LADCARIAEDWGYDEINLNVGCPSDRVQKGQFGACLMARPEQVAQCVEAMRSASTLPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD +SY+ ++DFV V+ +GC F VHAR A+L+ L+PKQNR IP L+Y+ VY
Sbjct: 145 KHRIGIDDRDSYEELQDFVRIVAESGCDRFSVHARKAWLQGLDPKQNRTIPPLRYDVVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I INGGI + HL +D VM+GR Y NP+L++ D Y + +
Sbjct: 205 LKQDFPQLVIEINGGILDLDQAQQHLQQVDAVMMGRAIYDNPYLLAAADAQLYGD--HLE 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R+ ++ M+ YI QQL+ ++SITRH+L L GS +K++L++
Sbjct: 263 PRSRLQVVLAMMPYIEQQLSQG--VRLHSITRHLLQLFHGCPGSRAWKRVLTE 313
>gi|242238196|ref|YP_002986377.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech703]
gi|242130253|gb|ACS84555.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech703]
Length = 335
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AIL + L +N EEHP+A Q+G ++P+ L
Sbjct: 25 LDWTDRHCRYFHRLLSHNALLYTEMVTTGAILHGRGDYLAYNDEEHPLALQLGGSDPQAL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A+I ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR V + +TVK
Sbjct: 85 AQCAEIAEQRGYDEINLNVGCPSDRVQNGRFGACLMAEAELVADCVDAMRGRVRLPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SYDF+ F+ TV+ GC TFIVHAR A+L L+PK+NR+IP L Y VY
Sbjct: 145 TRIGIDDQDSYDFLCAFIRTVAERGGCDTFIVHARKAWLSGLSPKENREIPPLDYPRVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGIKT ++ HL ++DGVM+GREAY+NP +++ D +
Sbjct: 205 LKRDFPALTIAINGGIKTLEQAQQHLQHLDGVMVGREAYQNPGVLAQVDSQLFGV--TAP 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P ++ M YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 263 VPDLFAVVEGMYPYIERELSRG--AQLGHITRHMLGLFQGLPGARQWRRFLSE 313
>gi|339053234|ref|ZP_08647986.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721563|gb|EGG99595.1| tRNA dihydrouridine synthase A [gamma proteobacterium IMCC2047]
Length = 351
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 207/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ +DRH R F R I++++ LY+EM TT AI+ G++ H L F+ E P+A Q+G + P
Sbjct: 43 LDWSDRHYRYFMRLISQHALLYSEMVTTGAIIHGDRDHLLGFDNHEQPVALQLGGSSPSD 102
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ +KI + GY+EINLN GCPS+RVQNG FGA LM KP LV+ C+++M+ +V I +TV
Sbjct: 103 LAECSKIGEDRGYNEINLNVGCPSDRVQNGAFGACLMAKPELVAACLESMQRAVNIPVTV 162
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ ++ F+ VS +GC TFI+HAR AFL+ L+PK+NR IP LKY++VY
Sbjct: 163 KHRIGIDDLDSYELLQRFIEIVSHSGCSTFIIHARKAFLQGLSPKENRDIPPLKYDWVYQ 222
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+ FP LEIIINGGIK+ E HL +DGVM+GREAY NP+ ++ D + + ++
Sbjct: 223 IKEQFPHLEIIINGGIKSLTESQKHLEQVDGVMIGREAYHNPYSLAQADAQLFDD--HHQ 280
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I +R DI+ + + YI QQL + + I++H+LGL G KF+Q +S+
Sbjct: 281 IASRHDILQQFLPYIEQQLTQD--VRLTHISKHILGLFHGQPGGRKFRQYISE 331
>gi|163803123|ref|ZP_02197007.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
gi|159173115|gb|EDP57947.1| tRNA-dihydrouridine synthase A [Vibrio sp. AND4]
Length = 318
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L N EEHP+A Q+G + P L
Sbjct: 5 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAHNEEEHPLALQLGGSNPADL 64
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++ +TVK
Sbjct: 65 ATCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVPVTVK 124
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 125 TRIGIDDHDSYQFLTDFVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 184
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L++ D + SN P
Sbjct: 185 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLAFVDQELFGSNAP-- 242
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R I+ M YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 243 -VKKRSQIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRYISE 293
>gi|419828953|ref|ZP_14352443.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-1A2]
gi|419831734|ref|ZP_14355202.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A2]
gi|422916116|ref|ZP_16950458.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02A1]
gi|423815746|ref|ZP_17715063.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55C2]
gi|423847825|ref|ZP_17718849.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59A1]
gi|423878717|ref|ZP_17722456.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-60A1]
gi|423996536|ref|ZP_17739803.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02C1]
gi|424015234|ref|ZP_17755085.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55B2]
gi|424018349|ref|ZP_17758152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59B1]
gi|424623722|ref|ZP_18062203.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A1]
gi|424628297|ref|ZP_18066607.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-51A1]
gi|424632249|ref|ZP_18070370.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-52A1]
gi|424635338|ref|ZP_18073363.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55A1]
gi|424639130|ref|ZP_18077031.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A1]
gi|424647413|ref|ZP_18085094.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A1]
gi|443526268|ref|ZP_21092355.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-78A1]
gi|341641086|gb|EGS65654.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02A1]
gi|408016438|gb|EKG53985.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A1]
gi|408021790|gb|EKG59026.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-52A1]
gi|408027801|gb|EKG64749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A1]
gi|408027886|gb|EKG64829.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55A1]
gi|408037524|gb|EKG73915.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A1]
gi|408059398|gb|EKG94163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-51A1]
gi|408622550|gb|EKK95533.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-1A2]
gi|408636924|gb|EKL09041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55C2]
gi|408644304|gb|EKL16001.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-60A1]
gi|408645429|gb|EKL17082.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59A1]
gi|408652383|gb|EKL23603.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A2]
gi|408854854|gb|EKL94598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-02C1]
gi|408862210|gb|EKM01749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-55B2]
gi|408870656|gb|EKM09931.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-59B1]
gi|443455386|gb|ELT19166.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-78A1]
Length = 316
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + P L
Sbjct: 2 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPNDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 182 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 290
>gi|386390228|ref|ZP_10075022.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
gi|385693538|gb|EIG24179.1| tRNA dihydrouridine synthase A [Haemophilus paraphrohaemolyticus
HK411]
Length = 326
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 207/293 (70%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AIL K L+++ E+P+A Q+G + PK+L
Sbjct: 16 LDWTTRHCRYFHRQFSQHALLYTEMITAPAILHAKYDLLEYDPAENPVALQLGGSNPKQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V A FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKV-QAYSNDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKYHLQFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI ++L K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIEKEL--AKGVYLNHIVRHMLGAFQNCKGARQWRRYLSE 302
>gi|307244957|ref|ZP_07527054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253910|ref|ZP_07535762.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258364|ref|ZP_07540105.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854122|gb|EFM86330.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863114|gb|EFM95056.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867548|gb|EFM99395.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 325
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYECVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENQP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIAAQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|288937656|ref|YP_003441715.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
gi|288892365|gb|ADC60683.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
Length = 331
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 20 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 140 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L L ++DGVM+GREAY+NP ++++ D +
Sbjct: 200 LKRDFPHLTMAINGGIKSLDEARLQLEHMDGVMVGREAYQNPGILASVDREIFGIAGADA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|422783599|ref|ZP_16836383.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
gi|323975321|gb|EGB70424.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
Length = 345
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAETRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD++SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDLDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|420139392|ref|ZP_14647241.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CIG1]
gi|421160001|ref|ZP_15619101.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
gi|403247869|gb|EJY61476.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa CIG1]
gi|404545646|gb|EKA54721.1| tRNA-dihydrouridine synthase A [Pseudomonas aeruginosa ATCC 25324]
Length = 332
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGR+AY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGRKAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>gi|190149417|ref|YP_001967942.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307262734|ref|ZP_07544361.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914548|gb|ACE60800.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871879|gb|EFN03596.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 329
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 20 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 80 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 140 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYECVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 199 KRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENQP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 256 LVTAREAVEKMLPYIAAQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 306
>gi|417675401|ref|ZP_12324824.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|420350227|ref|ZP_14851584.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
gi|332084336|gb|EGI89539.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 155-74]
gi|391262910|gb|EIQ21921.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
965-58]
Length = 345
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLVEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIEHELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|422829122|ref|ZP_16877290.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
gi|371610279|gb|EHN98808.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
Length = 345
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ KE HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLKEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|194432327|ref|ZP_03064615.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|416286014|ref|ZP_11648112.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|417692540|ref|ZP_12341734.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
gi|194419530|gb|EDX35611.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1012]
gi|320179045|gb|EFW54004.1| tRNA dihydrouridine synthase A [Shigella boydii ATCC 9905]
gi|332083541|gb|EGI88761.1| tRNA-dihydrouridine synthase A [Shigella boydii 5216-82]
Length = 339
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLVEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIEHELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|418021051|ref|ZP_12660210.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
gi|347603596|gb|EGY28402.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
Length = 311
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LY+EM TT AI+ K L ++ ++HP+ Q+G ++PK L
Sbjct: 2 LDWTDRHCRYFHRLLTKQTLLYSEMVTTGAIIHGKADYLAYSEQDHPVVLQLGGSDPKTL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM D+V I +TVK
Sbjct: 62 ADCAKLGQQRGYNEINLNIGCPSDRVQNGRFGACLMGEADLVADCIKAMNDAVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID +SY+F+ DFV T+++ GC FI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 122 TRIGIDSHDSYEFLCDFVDTIANKGGCHIFIIHARKAWLSGLSPKENREVPPLNYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I+INGGI T ++ HL Y+DGVM+GREAY+NP +++ D + PQ
Sbjct: 182 LKRDFPQLTIVINGGITTLEDAAYHLKYVDGVMIGREAYQNPAILAEVDRKLFD--PQAA 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I ++ +I + YI Q+L+ + ITRH+LGL + + G+ ++++ LS+
Sbjct: 240 ITDKVAVIKALYPYIEQELSRG--ARLGHITRHILGLFQGMPGARQWRRYLSE 290
>gi|421143578|ref|ZP_15603517.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens BBc6R8]
gi|404505269|gb|EKA19300.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens BBc6R8]
Length = 311
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT AIL G+ + L N EHP+A Q+G + P
Sbjct: 1 MDWTDRHCRFFLRLLSKNALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQLGGSVPAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAM+D+V I +TV
Sbjct: 61 LAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMQDAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 121 KHRIGINGRDSYAELCDFVGQVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEII+NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 181 LKQDFPELEIILNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI + L ++ ITRH LGL G+ KF+Q+LS
Sbjct: 239 VITRAEALAQLRPYIAEHLATGGA--MHHITRHALGLGTGFPGARKFRQLLS 288
>gi|152972912|ref|YP_001338058.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957761|gb|ABR79791.1| conserved protein, FMN-linked [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 313
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LLV+DCIKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNALLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 122 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|432452323|ref|ZP_19694574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|433035989|ref|ZP_20223668.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
gi|430976481|gb|ELC93347.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|431544850|gb|ELI19661.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
Length = 345
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + + Y
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGS--SYT 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 272 DADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|170720872|ref|YP_001748560.1| tRNA-dihydrouridine synthase A [Pseudomonas putida W619]
gi|169758875|gb|ACA72191.1| TIM-barrel protein, yjbN family [Pseudomonas putida W619]
Length = 321
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 202/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R++ LYTEM TT A+L N H L + EHP+A Q+G + P
Sbjct: 11 MDWTDRHCRFFLRLLSRHTLLYTEMVTTGALLHNDAHRFLRHDVSEHPLALQLGGSVPAD 70
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 71 LAACARLAEQAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 130
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 131 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 190
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
LK DFP+LEI++NGGIKT +E HL DGVMLGREAY NP++++ D + + SN P
Sbjct: 191 LKADFPDLEIVLNGGIKTLEESKAHLETFDGVMLGREAYHNPYVLAEVDQVLFGSNAP-- 248
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 249 -VVSRSEAMAKLRPYIVAHIESGGA--MHHVTRHILGLGQGFKGARRFRQLLS 298
>gi|355641594|ref|ZP_09052371.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. 2_1_26]
gi|354830759|gb|EHF14795.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. 2_1_26]
Length = 312
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 2 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ YDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 62 LAACARLAEEASYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F+VHAR A L+ L+PK+NR++P L+Y
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCRSFMVHARIAILEGLSPKENREVPPLRYEVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 182 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 241
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 242 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 295
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 296 ADPLRVFDQALEL 308
>gi|345874819|ref|ZP_08826618.1| dihydrouridine synthase [Neisseria weaveri LMG 5135]
gi|343969924|gb|EGV38127.1| dihydrouridine synthase [Neisseria weaveri LMG 5135]
Length = 336
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 146/310 (47%), Positives = 208/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++WLY+EM AI+ G++ L FN E P+A Q+G +EP
Sbjct: 20 LDWTDRHYRHMARQISRHTWLYSEMINAGAIIYGDQDRFLMFNEGEQPVALQLGGSEPAD 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+EINLNCGCPS RVQ G FGA LM + LV+DC+ +M+D+V I +TV
Sbjct: 80 LAKAAKAGEQYGYNEINLNCGCPSPRVQKGAFGACLMNEVGLVADCLNSMQDAVRIPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT++ C TFIVHARNA+L L+PK+NR++P LKY +VY
Sbjct: 140 KHRIGVDRQTEYQTVADFVGTLAHKTACTTFIVHARNAWLDGLSPKENREVPPLKYEYVY 199
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 237
LK++FP LEIIINGG+ T +EI HL ++DGVM+GREAY NP +M +D +Y S+ P
Sbjct: 200 RLKQEFPNLEIIINGGVTTNEEIAGHLQHVDGVMVGREAYHNPMIMREWDQRFYHSSEPP 259
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ ++++R+ Y R+Q+ + + RH LGLM + + ++++LS LL
Sbjct: 260 IEY---AELVDRIFRYSREQIQAGRGTILRHTVRHYLGLMHGLNKARVWRRMLSDAALLK 316
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 317 DNDGSLILQA 326
>gi|417957193|ref|ZP_12600119.1| dihydrouridine synthase [Neisseria weaveri ATCC 51223]
gi|343968773|gb|EGV36996.1| dihydrouridine synthase [Neisseria weaveri ATCC 51223]
Length = 336
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 146/310 (47%), Positives = 208/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++WLY+EM AI+ G++ L FN E P+A Q+G +EP
Sbjct: 20 LDWTDRHYRHMARQISRHTWLYSEMINAGAIIYGDQDRFLMFNEGEQPVALQLGGSEPAD 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+EINLNCGCPS RVQ G FGA LM + LV+DC+ +M+D+V I +TV
Sbjct: 80 LAKAAKAGEQYGYNEINLNCGCPSPRVQKGAFGACLMNEVGLVADCLNSMQDAVRIPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT++ C TFIVHARNA+L L+PK+NR++P LKY +VY
Sbjct: 140 KHRIGVDRQTEYQTVADFVGTLAHKTACTTFIVHARNAWLDGLSPKENREVPPLKYEYVY 199
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQ 237
LK++FP LEIIINGG+ T +EI HL ++DGVM+GREAY NP +M +D +Y S+ P
Sbjct: 200 RLKQEFPNLEIIINGGVTTNEEIAGHLQHVDGVMVGREAYHNPMIMREWDQRFYHSSEPP 259
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ ++++R+ Y R+Q+ + + RH LGLM + + ++++LS LL
Sbjct: 260 IEY---TELVDRIFRYSREQIQAGRGTILRHTVRHYLGLMHGLNKARVWRRMLSDAALLK 316
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 317 DNDGSLILQA 326
>gi|156932320|ref|YP_001436236.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ATCC BAA-894]
gi|156530574|gb|ABU75400.1| hypothetical protein ESA_00095 [Cronobacter sakazakii ATCC BAA-894]
Length = 313
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 62 AHCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 122 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVHQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP ++++ D + ++P
Sbjct: 182 LKRDFPKLTMSINGGIKTLDDVKTHLEHMDGVMVGREAYQNPGILASVDREIFGLDVPD- 240
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 241 --ADPVAVVRAMYPYIEREL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 290
>gi|312114498|ref|YP_004012094.1| yjbN family TIM-barrel protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219627|gb|ADP70995.1| TIM-barrel protein, yjbN family [Rhodomicrobium vannielii ATCC
17100]
Length = 343
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 208/299 (69%), Gaps = 9/299 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQ++R + LYTEM T+ AI+ G+++ L F+A EHP+A Q+G ++P +
Sbjct: 23 MDWTDRHCRFFHRQLSRRARLYTEMVTSGAIMFGDRERLLGFDASEHPVALQLGGSDPVE 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDI 117
LA++A+I +GYDEINLNCGCPS+RVQ+G FGA LM +P LV+ C+ A++ +V +I +
Sbjct: 83 LARAAEIGAGFGYDEINLNCGCPSDRVQSGRFGACLMAEPELVASCVAAIKSAVGGQIPV 142
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
TVK+RIGID+ +S + F+ TV+++GC FIVHAR A+LK L+P++NR +P L Y V
Sbjct: 143 TVKNRIGIDEQDSEADLTRFIETVAASGCEIFIVHARKAWLKGLSPRENRDVPPLDYERV 202
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y LK FPEL IIINGGI+T + HL +DGVMLGR AYKNP L+ D Y +
Sbjct: 203 YRLKAAFPELTIIINGGIETIAQSAKHLEMVDGVMLGRAAYKNPALLLEVDAALYG---E 259
Query: 238 YKIPTRI-DIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
P R + + RM+ YI ++L +++I RHMLGL+ G+ F+++L++ ++
Sbjct: 260 TAAPLRPHEALERMLPYIERELERG--TRLSAIARHMLGLVNGRPGARPFRRLLTEESV 316
>gi|388544792|ref|ZP_10148078.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M47T1]
gi|388277101|gb|EIK96677.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M47T1]
Length = 336
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++ + LYTEM TT A+L G+ L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSANALLYTEMVTTGALLNGDAARFLRHDDTEHPLALQLGGSTPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P+LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMGHPVLVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKADFPDLEIVLNGGIKTMAECQAHLGTFDGVMLGREAYHNPYLLATVDQELFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + R+ YI + + + ++ ITRH+LGL + G+ KF+Q+LS
Sbjct: 264 VISRAEALARLRPYIARHIEDGGA--MHHITRHILGLGQGFAGARKFRQMLS 313
>gi|311281407|ref|YP_003943638.1| yjbN family TIM-barrel protein [Enterobacter cloacae SCF1]
gi|308750602|gb|ADO50354.1| TIM-barrel protein, yjbN family [Enterobacter cloacae SCF1]
Length = 332
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD+ I +TVK
Sbjct: 81 AQCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDAASIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCEFINTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL ++DGVM+GRE Y+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLAEAKAHLQHMDGVMVGREVYQNPGILATVDREIFGASAADA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--IAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|300115485|ref|YP_003762060.1| TIM-barrel protein [Nitrosococcus watsonii C-113]
gi|299541422|gb|ADJ29739.1| TIM-barrel protein, yjbN family [Nitrosococcus watsonii C-113]
Length = 325
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 207/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R I+ ++ LYTEM TT A++ G++ L ++ EHP+A Q+G + P++
Sbjct: 16 MDWTDRHCRYFLRLISHHALLYTEMVTTGALVHGDRIRFLAHHSSEHPLALQLGGSHPEE 75
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I + +G+DE+NLN GCPSNRVQ+G FGA LM +P LV++C+ AM + +I +TV
Sbjct: 76 LALCAQIAEDYGFDEVNLNVGCPSNRVQSGRFGACLMAEPQLVAECVAAMAQATQIPVTV 135
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+ +SY+ + F+ TV+ AGCRTFI+HAR A+L+ L+PK+NR+ P L+Y+ V
Sbjct: 136 KTRIGIDEQDSYEALSSFISTVAQAGCRTFIIHARKAWLQGLSPKENREKPPLRYDVVRA 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP+LE++INGGI T KE+ HL +DGVM+GR AY NP+L++ D +Y +
Sbjct: 196 IKRDFPQLEVMINGGITTLKEVSEHLELLDGVMIGRAAYHNPYLLAPVDQRFYGDF--RA 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+PTR +II + Y +QL ++ +TRH+LGL + G+ +++ LS+
Sbjct: 254 LPTRHEIIEAFLPYAAEQLARGVY--LSRMTRHILGLFQGQPGARAWRRYLSE 304
>gi|307249353|ref|ZP_07531347.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858647|gb|EFM90709.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 329
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 20 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 80 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 140 HRIGIDDLDSYEFLCDFIEKVQPYS-NNFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 199 KRDFPHLNISINGGIKTVEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 256 LVTAREAVEKMLPYIETQ--TKKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 306
>gi|89075955|ref|ZP_01162327.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
gi|89048304|gb|EAR53883.1| putative NifR3/Smm1 family protein [Photobacterium sp. SKA34]
Length = 348
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N EEHP+A Q+G + L
Sbjct: 35 LDWTDRHCRYFHRLMSKEALLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNSIDL 94
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ AMRD V+I +TVK
Sbjct: 95 ARCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGEAELVAQCVTAMRDVVDIPVTVK 154
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F++DF+ VS GC F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 155 TRIGIDDQDSYEFLKDFIHVVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 214
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIKT +E++ HL ++DGVM+GREAY++P+LM+ D + + +
Sbjct: 215 LKQDFAHLTMAINGGIKTFEEMEAHLKHMDGVMVGREAYQSPYLMAEVDQRLFGS--ERP 272
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +++ M YI +QL N + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 273 VMKRREVVEAMYPYIEKQLANGSY--LGHITRHMLGLFQSMPGARQWRRHISE 323
>gi|262172527|ref|ZP_06040205.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
gi|261893603|gb|EEY39589.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
Length = 316
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 2 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPDLVAECVAAMRSVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDAQDSYEFLTQFISTVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+K+DFP L I +NGG+KT +E HL Y+DGVM+GREAY+NP+L++ D + + P
Sbjct: 182 IKRDFPHLTIAVNGGVKTLEEAQQHLQYLDGVMIGREAYQNPYLLAEVDQQIFGLDTP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRH+LGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSQVIHEMMPYIERELSQG--THLGHMTRHILGLFQNMPGARQWRRHISE 290
>gi|320539402|ref|ZP_08039071.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
gi|320030527|gb|EFW12537.1| putative tRNA-dihydrouridine synthase A [Serratia symbiotica str.
Tucson]
Length = 342
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L N EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRLLTKETLLYTEMVTTGAIIHGKGDYLAHNKEEHPVALQLGASDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 94 AHCAKLAEQRGYDEINLNVGCPSGRVQNGMFGACLMAQAALVADGIKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFISTVAGRGECAMFTLHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q
Sbjct: 214 LKRDFPALTIAINGGVKTLEEAQQHLQHLDGVMMGREAYQNPGILARVDNELFGV--QGA 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + II + YI ++L+N + ITRH+LGL + + G+ ++++ LS+
Sbjct: 272 VKDSVAIIESLYPYIERELSNGTY--LGHITRHILGLFQGVPGARQWRRHLSE 322
>gi|432409561|ref|ZP_19652251.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|432493381|ref|ZP_19735206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
gi|430939926|gb|ELC60132.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|431030101|gb|ELD43122.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
Length = 345
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|296136585|ref|YP_003643827.1| yjbN family TIM-barrel protein [Thiomonas intermedia K12]
gi|295796707|gb|ADG31497.1| TIM-barrel protein, yjbN family [Thiomonas intermedia K12]
Length = 349
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 199/294 (67%), Gaps = 10/294 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR IT+ + LYTEM TT A+L G+ LD+++ EHP+A Q+G +EP
Sbjct: 11 LDWTDRHCRYFHRLITQRALLYTEMVTTGALLYGDVARHLDYSSHEHPVALQLGGSEPVD 70
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDI 117
LA+ AK+ +WGYDEINLNCGCPS RVQ G FGA LM +P V D + AM ++V I +
Sbjct: 71 LARCAKLALEWGYDEINLNCGCPSPRVQRGAFGACLMAEPSRVRDSVAAMVEAVSGTIPV 130
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
TVKHRIG+D +SY FVRDFVGTVS GC TFIVHAR+A+L L+PK+NR IP L+ F+
Sbjct: 131 TVKHRIGVDHEDSYGFVRDFVGTVSQGGCETFIVHARSAWLDGLSPKENRDIPPLRPEFI 190
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
L++DFP L ++NGGIKT+++I L + GVM+GR AY++P+ +S +D + +
Sbjct: 191 LQLRRDFPALAFVLNGGIKTEQQIREWLPQVSGVMVGRAAYQDPWSLSTWDREFLGSA-D 249
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNIN--SITRHMLGLMKNIKGSNKFKQI 289
P R + +M YI K+K ++ +ITRHML L K G +++Q+
Sbjct: 250 SAAPEREIVEEQMGAYIAAW----KVKGLHPQAITRHMLNLWKGQPGGRRWRQV 299
>gi|393762890|ref|ZP_10351513.1| tRNA-dihydrouridine synthase A [Alishewanella agri BL06]
gi|392605807|gb|EIW88695.1| tRNA-dihydrouridine synthase A [Alishewanella agri BL06]
Length = 297
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 202/296 (68%), Gaps = 4/296 (1%)
Query: 15 ITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDE 74
+++++ LYTEM TT AI+ K L F+ +E P+ Q+G +EP +LA AK+ ++ GYD
Sbjct: 1 MSKHAVLYTEMVTTGAIIHGKGDYLGFSQQEQPLVLQLGGSEPAELAHCAKLAEQRGYDA 60
Query: 75 INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134
+NLN GCPS+RVQNG FGA LM +P LV+D +KAM+D V I ++VK RIGIDD + Y F+
Sbjct: 61 LNLNVGCPSDRVQNGMFGACLMARPQLVADSVKAMQDVVSIPVSVKTRIGIDDSDEYQFL 120
Query: 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG 194
+DFV TV+ AGC+ F++HAR A+LK L+PK+NR+IP L Y+ VY LK+DFP+L+I INGG
Sbjct: 121 QDFVATVAEAGCQQFVIHARKAWLKGLSPKENREIPPLNYDRVYQLKRDFPQLDISINGG 180
Query: 195 IKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYI 254
IKT + HL +DGVM+GREAY NP+L+S D Y + + +P++ ++ M+ YI
Sbjct: 181 IKTLTDAQQHLQQLDGVMIGREAYTNPYLLSQVDALLYQD--HWAVPSQHQLVRLMVPYI 238
Query: 255 RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNI 310
+QQ+ I RHMLGL + + G+ +++++LS+ L + L L +
Sbjct: 239 QQQIQQG--ARFWHIARHMLGLFQGMPGARQWRRLLSEQGHLASAEPELLLQALAL 292
>gi|157148055|ref|YP_001455374.1| tRNA-dihydrouridine synthase A [Citrobacter koseri ATCC BAA-895]
gi|157085260|gb|ABV14938.1| hypothetical protein CKO_03862 [Citrobacter koseri ATCC BAA-895]
Length = 345
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAQARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TV+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGI + +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 214 LKRDFPHLTMSINGGITSLEEAKAHLEHMDGVMIGREAYQNPGILASVDREIFGATTADA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|419812623|ref|ZP_14337487.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|385154505|gb|EIF16517.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
Length = 339
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTMLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|253991388|ref|YP_003042744.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
gi|253782838|emb|CAQ86003.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
Length = 341
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/295 (49%), Positives = 205/295 (69%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K + L +N EEHP+A Q+G ++P+ L
Sbjct: 30 LDWTDRHCRYFHRLLSKQTLLYTEMVTTGAIIHGKGNYLAYNEEEHPLALQLGGSDPQAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AKI Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM+D V + +TVK
Sbjct: 90 AHCAKIAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAKLVADCVKAMQDVVNVPVTVK 149
Query: 121 HRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ T V +GC F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDEQDSYEFLCDFIDTVVQHSGCNIFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+L I INGGIK+ +E HL Y+DGVM+GREAY+NP +++ D + +
Sbjct: 210 LKKDFPQLTIAINGGIKSLEEAKQHLQYVDGVMIGREAYQNPAILAQVDHELFDAV---- 265
Query: 240 IPT--RIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
IP + +I + YI Q L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 IPVVDTVAVIRALYPYIEQALSQGTY--LGHITRHILGIFQGIPGARQWRRHLSE 318
>gi|432790833|ref|ZP_20024951.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|432796823|ref|ZP_20030853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
gi|431344148|gb|ELG31102.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|431346808|gb|ELG33702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
Length = 345
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|168760895|ref|ZP_02785902.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|170682797|ref|YP_001746438.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|191167463|ref|ZP_03029277.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209921533|ref|YP_002295617.1| tRNA-dihydrouridine synthase A [Escherichia coli SE11]
gi|217325395|ref|ZP_03441479.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|301019187|ref|ZP_07183385.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|386698928|ref|YP_006162765.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|386711998|ref|YP_006175719.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387509503|ref|YP_006161759.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|407467057|ref|YP_006786501.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484221|ref|YP_006781371.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484767|ref|YP_006772313.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416308837|ref|ZP_11655290.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|416343439|ref|ZP_11677443.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|416813155|ref|ZP_11891054.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97]
gi|416823667|ref|ZP_11895656.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|417149502|ref|ZP_11989593.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|417157170|ref|ZP_11994794.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|417167417|ref|ZP_12000303.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|417173676|ref|ZP_12003472.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|417279832|ref|ZP_12067137.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|417293632|ref|ZP_12080911.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|417584457|ref|ZP_12235241.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|417620745|ref|ZP_12271141.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|417637011|ref|ZP_12287212.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|417807749|ref|ZP_12454675.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|417835490|ref|ZP_12481929.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|417867571|ref|ZP_12512607.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|417944826|ref|ZP_12588065.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|417977734|ref|ZP_12618514.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|418270660|ref|ZP_12888421.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|418305679|ref|ZP_12917473.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|418943089|ref|ZP_13496313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|419048150|ref|ZP_13595076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|419059981|ref|ZP_13606775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|419123414|ref|ZP_13668349.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|419139483|ref|ZP_13684267.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|419145169|ref|ZP_13689890.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|419161932|ref|ZP_13706418.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|419167022|ref|ZP_13711464.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|419173038|ref|ZP_13716904.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|419183613|ref|ZP_13727193.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|419189212|ref|ZP_13732709.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|419347900|ref|ZP_13889260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|419394384|ref|ZP_13935175.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|419919489|ref|ZP_14437641.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|419925921|ref|ZP_14443740.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|419929982|ref|ZP_14447646.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|419935807|ref|ZP_14452875.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|419938219|ref|ZP_14455059.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|419950991|ref|ZP_14467191.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|422761367|ref|ZP_16815125.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|422772606|ref|ZP_16826293.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|424458775|ref|ZP_17909846.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|424478022|ref|ZP_17927315.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|425189406|ref|ZP_18586655.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|425431515|ref|ZP_18812101.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|428962046|ref|ZP_19033301.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|428980803|ref|ZP_19050585.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|428992705|ref|ZP_19061671.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|429023447|ref|ZP_19089939.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|429047475|ref|ZP_19112165.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429829329|ref|ZP_19360300.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
gi|170520515|gb|ACB18693.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|189368570|gb|EDU86986.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|190902505|gb|EDV62240.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209914792|dbj|BAG79866.1| conserved hypothetical protein [Escherichia coli SE11]
gi|217321616|gb|EEC30040.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|299882344|gb|EFI90555.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|320200820|gb|EFW75406.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|320654888|gb|EFX22849.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660736|gb|EFX28193.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|323940232|gb|EGB36425.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|324118621|gb|EGC12513.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|326346520|gb|EGD70254.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|339417777|gb|AEJ59449.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|340732070|gb|EGR61209.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|340737645|gb|EGR71900.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|341920860|gb|EGT70465.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|342363423|gb|EGU27531.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|344192596|gb|EGV46686.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|345342640|gb|EGW75032.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|345368410|gb|EGX00408.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|345384293|gb|EGX14160.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|374361497|gb|AEZ43204.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|375321596|gb|EHS67417.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|377887894|gb|EHU52368.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|377901048|gb|EHU65371.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|377960668|gb|EHV24147.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|377978281|gb|EHV41560.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|377988030|gb|EHV51211.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|378003044|gb|EHV66090.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|378005322|gb|EHV68326.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|378008943|gb|EHV71901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|378020383|gb|EHV83129.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|378022948|gb|EHV85629.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|378181512|gb|EHX42182.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|378232283|gb|EHX92384.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|383390455|gb|AFH15413.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|383407690|gb|AFH13933.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|386161723|gb|EIH23526.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|386165920|gb|EIH32440.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|386171539|gb|EIH43583.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|386176368|gb|EIH53847.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|386237548|gb|EII74493.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|386251820|gb|EIJ01512.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|388385029|gb|EIL46734.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|388387683|gb|EIL49293.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|388402536|gb|EIL63108.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|388403648|gb|EIL64152.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|388410787|gb|EIL70990.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|388415638|gb|EIL75560.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|390740474|gb|EIO11601.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|390764183|gb|EIO33397.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|397894258|gb|EJL10705.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|406779929|gb|AFS59353.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056518|gb|AFS76569.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063092|gb|AFS84139.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408100365|gb|EKH32871.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|408341112|gb|EKJ55583.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|427200589|gb|EKV71002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|427220916|gb|EKV89803.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|427237122|gb|EKW04666.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|427272745|gb|EKW37470.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|427295400|gb|EKW58508.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429250232|gb|EKY34897.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
Length = 339
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|15834285|ref|NP_313058.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
Sakai]
gi|74314543|ref|YP_312962.1| tRNA-dihydrouridine synthase A [Shigella sonnei Ss046]
gi|170083506|ref|YP_001732826.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|193063063|ref|ZP_03044155.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218556606|ref|YP_002389520.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218697757|ref|YP_002405424.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218707670|ref|YP_002415189.1| tRNA -dihydrouridine synthase A [Escherichia coli UMN026]
gi|254163985|ref|YP_003047093.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|260846843|ref|YP_003224621.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|291285465|ref|YP_003502283.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300817967|ref|ZP_07098180.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300823590|ref|ZP_07103718.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300899835|ref|ZP_07118049.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300906360|ref|ZP_07124058.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300917303|ref|ZP_07133976.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300924312|ref|ZP_07140291.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300938186|ref|ZP_07152956.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300946621|ref|ZP_07160880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300957541|ref|ZP_07169748.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|301021575|ref|ZP_07185575.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|301302728|ref|ZP_07208857.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|301330578|ref|ZP_07223186.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301645037|ref|ZP_07245000.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|307312109|ref|ZP_07591746.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|309795855|ref|ZP_07690269.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|331644790|ref|ZP_08345907.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331665718|ref|ZP_08366612.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331670912|ref|ZP_08371746.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331680179|ref|ZP_08380838.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|378715002|ref|YP_005279895.1| yjbN family TIM-barrel protein [Escherichia coli KO11FL]
gi|386278658|ref|ZP_10056352.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386597433|ref|YP_006093833.1| yjbN family TIM-barrel protein [Escherichia coli DH1]
gi|386611456|ref|YP_006126942.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387623679|ref|YP_006131307.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|387885273|ref|YP_006315575.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|388479998|ref|YP_492192.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
W3110]
gi|404372969|ref|ZP_10978244.1| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|414578913|ref|ZP_11436071.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|415775768|ref|ZP_11487452.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|415831878|ref|ZP_11517429.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|415851830|ref|ZP_11528400.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|415864649|ref|ZP_11537673.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|415874338|ref|ZP_11541392.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|417127511|ref|ZP_11974951.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|417132710|ref|ZP_11977495.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|417141753|ref|ZP_11984605.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|417187164|ref|ZP_12012021.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|417238755|ref|ZP_12036179.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|417249758|ref|ZP_12041542.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|417261060|ref|ZP_12048553.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|417269156|ref|ZP_12056516.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|417273712|ref|ZP_12061057.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|417310661|ref|ZP_12097471.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|417583720|ref|ZP_12234514.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|417599494|ref|ZP_12250112.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|417610830|ref|ZP_12261315.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|417615717|ref|ZP_12266162.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|417631546|ref|ZP_12281774.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|418960069|ref|ZP_13511964.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|419053914|ref|ZP_13600777.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|419065341|ref|ZP_13612045.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|419112114|ref|ZP_13657159.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|419117635|ref|ZP_13662637.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|419129077|ref|ZP_13673940.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|419151060|ref|ZP_13695702.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|419156579|ref|ZP_13701128.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|419194344|ref|ZP_13737778.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|419280846|ref|ZP_13823079.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|419292283|ref|ZP_13834361.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|419303099|ref|ZP_13845085.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|419309143|ref|ZP_13851027.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|419314102|ref|ZP_13855954.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|419352352|ref|ZP_13893673.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|419357838|ref|ZP_13899077.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|419362797|ref|ZP_13903997.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|419367977|ref|ZP_13909116.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|419372703|ref|ZP_13913802.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|419383646|ref|ZP_13924578.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|419388902|ref|ZP_13929756.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|419399518|ref|ZP_13940272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|419404760|ref|ZP_13945471.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|419409921|ref|ZP_13950600.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|419415486|ref|ZP_13956112.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|419805709|ref|ZP_14330838.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|420361454|ref|ZP_14862391.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|420366102|ref|ZP_14866955.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|420388436|ref|ZP_14887762.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|420394208|ref|ZP_14893445.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|421820906|ref|ZP_16256383.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|421827916|ref|ZP_16263248.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|422331517|ref|ZP_16412533.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|422354931|ref|ZP_16435656.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|422776251|ref|ZP_16829905.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|422958043|ref|ZP_16970257.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|422990314|ref|ZP_16981086.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|422997210|ref|ZP_16987972.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|423002306|ref|ZP_16993057.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|423005962|ref|ZP_16996707.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|423012525|ref|ZP_17003255.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|423021756|ref|ZP_17012460.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|423026910|ref|ZP_17017604.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|423032739|ref|ZP_17023425.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|423035615|ref|ZP_17026291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040734|ref|ZP_17031402.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047420|ref|ZP_17038078.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055958|ref|ZP_17044764.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057963|ref|ZP_17046761.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703599|ref|ZP_17678031.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|423708364|ref|ZP_17682744.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|424080404|ref|ZP_17817337.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|424112734|ref|ZP_17846938.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|424124866|ref|ZP_17858141.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|424452613|ref|ZP_17904228.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|424528995|ref|ZP_17972685.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|424535138|ref|ZP_17978465.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|425100876|ref|ZP_18503591.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|425112954|ref|ZP_18514853.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|425117681|ref|ZP_18519448.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|425122396|ref|ZP_18524060.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|425128923|ref|ZP_18530069.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|425159409|ref|ZP_18558619.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|425171003|ref|ZP_18569455.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|425177043|ref|ZP_18575140.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|425214787|ref|ZP_18610168.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|425220869|ref|ZP_18615810.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|425227524|ref|ZP_18621967.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|425233673|ref|ZP_18627690.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|425239596|ref|ZP_18633294.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|425251985|ref|ZP_18644907.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|425275402|ref|ZP_18666774.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|425285955|ref|ZP_18676961.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|425413899|ref|ZP_18795638.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|425420221|ref|ZP_18801470.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|425425094|ref|ZP_18806232.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|427811850|ref|ZP_18978915.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|428955991|ref|ZP_19027759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|428986610|ref|ZP_19055976.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|428998598|ref|ZP_19067168.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|429011083|ref|ZP_19078450.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|429017496|ref|ZP_19084350.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|429029414|ref|ZP_19095364.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|429052887|ref|ZP_19117438.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|429063933|ref|ZP_19127872.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|429081140|ref|ZP_19144260.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429721797|ref|ZP_19256708.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773875|ref|ZP_19305884.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429779060|ref|ZP_19311021.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782895|ref|ZP_19314815.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429788288|ref|ZP_19320170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429794726|ref|ZP_19326562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429800686|ref|ZP_19332470.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429804299|ref|ZP_19336051.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429809124|ref|ZP_19340834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429814888|ref|ZP_19346553.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429820092|ref|ZP_19351716.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429835802|ref|ZP_19366016.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429906166|ref|ZP_19372138.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910300|ref|ZP_19376258.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916198|ref|ZP_19382141.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921246|ref|ZP_19387170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927051|ref|ZP_19392960.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930984|ref|ZP_19396881.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937525|ref|ZP_19403409.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429943203|ref|ZP_19409074.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945884|ref|ZP_19411742.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953449|ref|ZP_19419291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956792|ref|ZP_19422622.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432351237|ref|ZP_19594554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|432379291|ref|ZP_19622268.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|432404445|ref|ZP_19647184.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|432428713|ref|ZP_19671188.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|432463456|ref|ZP_19705583.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|432478411|ref|ZP_19720392.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|432479001|ref|ZP_19720968.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|432491879|ref|ZP_19733734.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|432520261|ref|ZP_19757436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|432531841|ref|ZP_19768857.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|432540429|ref|ZP_19777317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|432545911|ref|ZP_19782728.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|432551392|ref|ZP_19788135.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|432561499|ref|ZP_19798137.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|432604875|ref|ZP_19841098.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|432624444|ref|ZP_19860452.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|432625219|ref|ZP_19861214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|432643645|ref|ZP_19879462.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|432658890|ref|ZP_19894560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|432663768|ref|ZP_19899375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|432682842|ref|ZP_19918190.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|432683524|ref|ZP_19918853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|432689370|ref|ZP_19924630.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|432702216|ref|ZP_19937350.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|432716681|ref|ZP_19951690.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|432735095|ref|ZP_19969903.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|432752504|ref|ZP_19987078.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|432762956|ref|ZP_19997414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|432768421|ref|ZP_20002808.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|432772821|ref|ZP_20007129.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|432808295|ref|ZP_20042205.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|432811799|ref|ZP_20045651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|432817883|ref|ZP_20051610.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|432829663|ref|ZP_20063275.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|432832716|ref|ZP_20066266.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|432837144|ref|ZP_20070644.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|432857506|ref|ZP_20084376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|432872090|ref|ZP_20091969.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|432882896|ref|ZP_20098516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|432908878|ref|ZP_20116469.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|432931883|ref|ZP_20131824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|432943915|ref|ZP_20140578.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|432951533|ref|ZP_20145037.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|432958064|ref|ZP_20149206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|432965817|ref|ZP_20154737.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|433021308|ref|ZP_20209376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|433045591|ref|ZP_20233057.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|433050521|ref|ZP_20237831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|433055680|ref|ZP_20242824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|433065520|ref|ZP_20252414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|433070459|ref|ZP_20257212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|433094450|ref|ZP_20280692.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|433132641|ref|ZP_20318055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|433137312|ref|ZP_20322629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|433161209|ref|ZP_20346015.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|433180924|ref|ZP_20365288.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|433196113|ref|ZP_20380070.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|433205807|ref|ZP_20389541.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|442594682|ref|ZP_21012561.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444966243|ref|ZP_21283783.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|445031633|ref|ZP_21347283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|445047930|ref|ZP_21363163.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|445053517|ref|ZP_21368513.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|445061494|ref|ZP_21373996.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
gi|13364508|dbj|BAB38454.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73858020|gb|AAZ90727.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|85676801|dbj|BAE78051.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K12 substr.
W3110]
gi|169891341|gb|ACB05048.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|192931322|gb|EDV83924.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218354489|emb|CAV01337.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218363375|emb|CAR01028.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218434767|emb|CAR15700.1| tRNA-dihydrouridine synthase A [Escherichia coli UMN026]
gi|253975886|gb|ACT41557.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|257761990|dbj|BAI33487.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|260451122|gb|ACX41544.1| TIM-barrel protein, yjbN family [Escherichia coli DH1]
gi|290765338|gb|ADD59299.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300315715|gb|EFJ65499.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|300356606|gb|EFJ72476.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300397973|gb|EFJ81511.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|300401808|gb|EFJ85346.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300415447|gb|EFJ98757.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300419477|gb|EFK02788.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300453720|gb|EFK17340.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300456844|gb|EFK20337.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300523922|gb|EFK44991.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300529377|gb|EFK50439.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300841948|gb|EFK69708.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|300843456|gb|EFK71216.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301076659|gb|EFK91465.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|306907916|gb|EFN38417.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|308120516|gb|EFO57778.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|315063373|gb|ADT77700.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|315138603|dbj|BAJ45762.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|315254721|gb|EFU34689.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|315617417|gb|EFU98023.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|323164554|gb|EFZ50355.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|323182152|gb|EFZ67562.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|323380563|gb|ADX52831.1| TIM-barrel protein, yjbN family [Escherichia coli KO11FL]
gi|323946182|gb|EGB42216.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|324017108|gb|EGB86327.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|331035765|gb|EGI08003.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331056769|gb|EGI28763.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331061826|gb|EGI33751.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331071642|gb|EGI42978.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|338767747|gb|EGP22557.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|342930161|gb|EGU98883.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|345331951|gb|EGW64409.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|345347312|gb|EGW79624.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|345352482|gb|EGW84730.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|345356864|gb|EGW89064.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|345368782|gb|EGX00778.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|354856290|gb|EHF16750.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|354860856|gb|EHF21297.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|354861381|gb|EHF21821.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|354870086|gb|EHF30492.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|354874485|gb|EHF34853.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|354883727|gb|EHF44042.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|354887989|gb|EHF48252.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|354891673|gb|EHF51899.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|354903374|gb|EHF63476.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907020|gb|EHF67087.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908961|gb|EHF68998.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354911087|gb|EHF71093.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354919640|gb|EHF79582.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|359334159|dbj|BAL40606.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MDS42]
gi|371596951|gb|EHN85777.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|373247535|gb|EHP66976.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|377888304|gb|EHU52775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|377904979|gb|EHU69256.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|377952740|gb|EHV16321.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|377956034|gb|EHV19585.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|377968295|gb|EHV31689.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|377987624|gb|EHV50809.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|377991087|gb|EHV54241.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|378033676|gb|EHV96251.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|378122378|gb|EHW83806.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|378123054|gb|EHW84472.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|378143086|gb|EHX04279.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|378145028|gb|EHX06195.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|378153792|gb|EHX14871.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|378194748|gb|EHX55258.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|378194907|gb|EHX55415.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|378196913|gb|EHX57397.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|378207648|gb|EHX68038.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|378211661|gb|EHX71997.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|378223175|gb|EHX83403.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|378225785|gb|EHX85979.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|378238668|gb|EHX98662.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|378241515|gb|EHY01481.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|378249386|gb|EHY09295.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|378254588|gb|EHY14451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|384377180|gb|EIE35076.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|384471302|gb|EIE55384.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|385708038|gb|EIG45058.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|385708313|gb|EIG45326.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|386124171|gb|EIG72754.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386143977|gb|EIG90444.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|386150564|gb|EIH01853.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|386155656|gb|EIH12007.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|386181655|gb|EIH64416.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|386213292|gb|EII23721.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|386220079|gb|EII36543.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|386225464|gb|EII47794.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|386227961|gb|EII55317.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|386233894|gb|EII65874.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|386798731|gb|AFJ31765.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|390636843|gb|EIN16408.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|390656199|gb|EIN34085.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|390676800|gb|EIN52879.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|390736690|gb|EIO08014.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|390847338|gb|EIP10884.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|390857612|gb|EIP20039.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|391276753|gb|EIQ35515.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|391279919|gb|EIQ38599.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|391291273|gb|EIQ49683.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|391300720|gb|EIQ58628.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|391308710|gb|EIQ66400.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|404293218|gb|EEH72154.2| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|408073042|gb|EKH07351.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|408079601|gb|EKH13716.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|408087883|gb|EKH21285.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|408092649|gb|EKH25834.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|408124563|gb|EKH55227.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|408134422|gb|EKH64253.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|408135989|gb|EKH65748.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|408143289|gb|EKH72597.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|408151617|gb|EKH80104.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|408160868|gb|EKH88859.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|408189214|gb|EKI14964.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|408196910|gb|EKI22184.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|408322390|gb|EKJ38384.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|408333436|gb|EKJ48385.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|408340122|gb|EKJ54631.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|408544476|gb|EKK21929.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|408544935|gb|EKK22376.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|408562418|gb|EKK38580.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|408562657|gb|EKK38814.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|408563515|gb|EKK39647.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|408607240|gb|EKK80644.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|412972029|emb|CCJ46699.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|427200763|gb|EKV71175.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|427237348|gb|EKW04891.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|427241671|gb|EKW09095.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|427256764|gb|EKW22915.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|427256854|gb|EKW23002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|427274140|gb|EKW38801.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|427296711|gb|EKW59759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|427309915|gb|EKW72201.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|427325460|gb|EKW86900.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429250691|gb|EKY35341.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429354130|gb|EKY90834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429354983|gb|EKY91677.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429355975|gb|EKY92658.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429369700|gb|EKZ06275.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429369995|gb|EKZ06562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429371740|gb|EKZ08291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429385867|gb|EKZ22319.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429387816|gb|EKZ24247.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429387996|gb|EKZ24423.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429398944|gb|EKZ35269.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429401059|gb|EKZ37368.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429403621|gb|EKZ39903.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412014|gb|EKZ48212.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429414147|gb|EKZ50323.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422266|gb|EKZ58386.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429425143|gb|EKZ61234.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429430862|gb|EKZ66913.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429437739|gb|EKZ73737.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441594|gb|EKZ77563.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429446936|gb|EKZ82861.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429453175|gb|EKZ89044.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458229|gb|EKZ94058.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430881972|gb|ELC05177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|430894939|gb|ELC17215.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|430922110|gb|ELC42874.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|430949756|gb|ELC69182.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|430984614|gb|ELD01236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|431001219|gb|ELD16806.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|431011961|gb|ELD26031.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|431016488|gb|ELD30033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|431046854|gb|ELD56945.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|431065903|gb|ELD74652.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|431066212|gb|ELD74956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|431069508|gb|ELD77836.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|431075033|gb|ELD82568.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|431102271|gb|ELE07097.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|431135527|gb|ELE37403.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|431154496|gb|ELE55299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|431167158|gb|ELE67442.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|431176537|gb|ELE76495.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|431205121|gb|ELF03629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|431206103|gb|ELF04535.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|431216417|gb|ELF14055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|431226748|gb|ELF23906.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|431233796|gb|ELF29382.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|431248629|gb|ELF42822.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|431269061|gb|ELF60420.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|431288895|gb|ELF79650.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|431292445|gb|ELF82833.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|431314624|gb|ELG02557.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|431321247|gb|ELG08860.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|431322968|gb|ELG10525.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|431351518|gb|ELG38304.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|431358555|gb|ELG45206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|431358872|gb|ELG45517.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|431381247|gb|ELG65878.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|431389915|gb|ELG73624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|431394112|gb|ELG77653.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|431406404|gb|ELG89624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|431410675|gb|ELG93831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|431422141|gb|ELH04335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|431450338|gb|ELH30825.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|431458467|gb|ELH38791.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|431466054|gb|ELH46133.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|431475178|gb|ELH54982.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|431476578|gb|ELH56368.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|431484867|gb|ELH64538.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|431525831|gb|ELI02605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|431550752|gb|ELI24740.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|431560792|gb|ELI34299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|431564308|gb|ELI37484.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|431577136|gb|ELI49788.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|431577648|gb|ELI50278.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|431605804|gb|ELI75191.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|431640965|gb|ELJ08710.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|431652445|gb|ELJ19595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|431672194|gb|ELJ38466.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|431696969|gb|ELJ62118.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|431712298|gb|ELJ76595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|431714749|gb|ELJ78928.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|441605221|emb|CCP97820.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444571367|gb|ELV47851.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|444636108|gb|ELW09511.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|444656499|gb|ELW29023.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|444658560|gb|ELW31011.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|444666168|gb|ELW38246.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
Length = 345
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|70729357|ref|YP_259094.1| tRNA-dihydrouridine synthase A [Pseudomonas protegens Pf-5]
gi|68343656|gb|AAY91262.1| tRNA dihydrouridine synthase A [Pseudomonas protegens Pf-5]
Length = 336
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ + L ++ EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKHTLLYTEMVTTGALLNGDHERFLRYHPSEHPLALQLGGSTPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVMEAGCSSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEII+NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKADFPQLEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TEP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + R+ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VISRAEALARLRPYIAEHLAAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 313
>gi|419337329|ref|ZP_13878832.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
gi|378178252|gb|EHX39021.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
Length = 313
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 62 AQCAKLAEAHGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 182 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|416779333|ref|ZP_11876338.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
gi|320638805|gb|EFX08451.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
Length = 339
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|26250830|ref|NP_756870.1| tRNA-dihydrouridine synthase A [Escherichia coli CFT073]
gi|91213570|ref|YP_543556.1| tRNA-dihydrouridine synthase A [Escherichia coli UTI89]
gi|110644384|ref|YP_672114.1| tRNA-dihydrouridine synthase A [Escherichia coli 536]
gi|117626314|ref|YP_859637.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|191172024|ref|ZP_03033569.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215489385|ref|YP_002331816.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218561117|ref|YP_002394030.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218692332|ref|YP_002400544.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222158756|ref|YP_002558895.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|227886947|ref|ZP_04004752.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|237703603|ref|ZP_04534084.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|306815840|ref|ZP_07449985.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|331660615|ref|ZP_08361547.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|386602090|ref|YP_006103596.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|386606612|ref|YP_006112912.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|386621742|ref|YP_006141322.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|386632022|ref|YP_006151742.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|386636942|ref|YP_006156661.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|386641700|ref|YP_006108498.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|387619365|ref|YP_006122387.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|387831956|ref|YP_003351893.1| hypothetical protein ECSF_3903 [Escherichia coli SE15]
gi|417088162|ref|ZP_11954891.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|417287891|ref|ZP_12075177.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|417664694|ref|ZP_12314273.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|419702916|ref|ZP_14230498.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|419913185|ref|ZP_14431627.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|419943137|ref|ZP_14459707.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|422751074|ref|ZP_16804984.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|422757189|ref|ZP_16811010.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|422840511|ref|ZP_16888482.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|425280507|ref|ZP_18671715.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|432360522|ref|ZP_19603729.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|432365322|ref|ZP_19608471.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|432383964|ref|ZP_19626884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|432384979|ref|ZP_19627884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|432395454|ref|ZP_19638250.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|432409140|ref|ZP_19651838.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|432419670|ref|ZP_19662233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|432429809|ref|ZP_19672261.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|432439028|ref|ZP_19681400.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|432454298|ref|ZP_19696515.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|432468458|ref|ZP_19710529.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|432473417|ref|ZP_19715450.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|432502626|ref|ZP_19744371.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|432506961|ref|ZP_19748675.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|432516455|ref|ZP_19753666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|432526543|ref|ZP_19763651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|432556581|ref|ZP_19793283.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|432566482|ref|ZP_19803018.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|432571368|ref|ZP_19807864.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|432580849|ref|ZP_19817270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|432585834|ref|ZP_19822212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|432590647|ref|ZP_19826984.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|432595351|ref|ZP_19831649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|432605507|ref|ZP_19841712.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|432648737|ref|ZP_19884518.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|432653723|ref|ZP_19889458.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|432658305|ref|ZP_19893997.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|432696934|ref|ZP_19932121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|432701581|ref|ZP_19936721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|432708455|ref|ZP_19943527.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|432715923|ref|ZP_19950944.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|432721212|ref|ZP_19956145.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|432725610|ref|ZP_19960516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|432730372|ref|ZP_19965236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|432739392|ref|ZP_19974116.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|432748040|ref|ZP_19982698.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|432757024|ref|ZP_19991564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|432761921|ref|ZP_19996390.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|432776393|ref|ZP_20010654.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|432781392|ref|ZP_20015599.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|432790092|ref|ZP_20024216.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|432818859|ref|ZP_20052577.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|432824988|ref|ZP_20058649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|432841898|ref|ZP_20075340.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|432891895|ref|ZP_20104374.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|432896081|ref|ZP_20107358.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|432908008|ref|ZP_20116270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|432941090|ref|ZP_20138784.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|432969653|ref|ZP_20158546.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|432976292|ref|ZP_20165121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|432978938|ref|ZP_20167733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|432987914|ref|ZP_20176620.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|432988561|ref|ZP_20177237.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|432993273|ref|ZP_20181900.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|432997732|ref|ZP_20186308.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|433003009|ref|ZP_20191513.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|433010268|ref|ZP_20198676.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|433031017|ref|ZP_20218853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|433041086|ref|ZP_20228666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|433060598|ref|ZP_20247621.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|433075407|ref|ZP_20262033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|433080280|ref|ZP_20266789.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|433084999|ref|ZP_20271436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|433089802|ref|ZP_20276152.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|433098903|ref|ZP_20285061.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|433103672|ref|ZP_20289732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|433108334|ref|ZP_20294285.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|433113347|ref|ZP_20299186.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|433118006|ref|ZP_20303777.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|433122736|ref|ZP_20308383.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|433127708|ref|ZP_20313240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|433141781|ref|ZP_20327010.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|433146709|ref|ZP_20331831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|433151733|ref|ZP_20336721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|433156303|ref|ZP_20341220.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|433166089|ref|ZP_20350807.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|433171087|ref|ZP_20355695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|433185864|ref|ZP_20370089.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|433190879|ref|ZP_20374956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|433200840|ref|ZP_20384713.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|433210269|ref|ZP_20393923.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|433215106|ref|ZP_20398670.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
gi|38604877|sp|Q8FB30.1|DUSA_ECOL6 RecName: Full=tRNA-dihydrouridine synthase A
gi|26111261|gb|AAN83444.1|AE016770_244 Hypothetical protein yjbN [Escherichia coli CFT073]
gi|91075144|gb|ABE10025.1| hypothetical protein YjbN [Escherichia coli UTI89]
gi|110345976|gb|ABG72213.1| hypothetical protein YjbN (putative tRNA-dihydrouridine synthase)
[Escherichia coli 536]
gi|115515438|gb|ABJ03513.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|190907789|gb|EDV67383.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215267457|emb|CAS11910.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218367886|emb|CAR05681.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218429896|emb|CAR10723.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222035761|emb|CAP78506.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|226901515|gb|EEH87774.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|227836088|gb|EEJ46554.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|281181113|dbj|BAI57443.1| conserved hypothetical protein [Escherichia coli SE15]
gi|294489479|gb|ADE88235.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|305850815|gb|EFM51271.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|307556192|gb|ADN48967.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|307629096|gb|ADN73400.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|312948626|gb|ADR29453.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|323950409|gb|EGB46290.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|323954491|gb|EGB50275.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|330908368|gb|EGH36887.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|331051657|gb|EGI23696.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|333972243|gb|AEG39048.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|355349206|gb|EHF98415.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|355422921|gb|AER87118.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|355427841|gb|AER92037.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|371606200|gb|EHN94798.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|380345931|gb|EIA34237.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|386248676|gb|EII94848.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|388390010|gb|EIL51513.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|388421812|gb|EIL81413.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|408196580|gb|EKI21859.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|430872230|gb|ELB95844.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|430882587|gb|ELC05666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|430902607|gb|ELC24464.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|430911578|gb|ELC32859.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|430919738|gb|ELC40659.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|430925616|gb|ELC46282.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|430948977|gb|ELC68558.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|430958081|gb|ELC76679.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|430959226|gb|ELC77560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|430987409|gb|ELD03948.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|430989354|gb|ELD05810.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|430994902|gb|ELD11214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|431025256|gb|ELD38367.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|431034284|gb|ELD46225.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|431037366|gb|ELD48352.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|431046760|gb|ELD56853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|431095821|gb|ELE01422.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|431104526|gb|ELE08901.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|431112847|gb|ELE16528.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|431124246|gb|ELE26898.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|431125135|gb|ELE27565.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|431134773|gb|ELE36716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|431135289|gb|ELE37204.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|431143486|gb|ELE45211.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|431177078|gb|ELE77016.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|431186358|gb|ELE85920.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|431186944|gb|ELE86476.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|431229533|gb|ELF26177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|431239218|gb|ELF33863.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|431250335|gb|ELF44396.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|431254028|gb|ELF47504.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|431269735|gb|ELF61040.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|431278346|gb|ELF69339.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|431279632|gb|ELF70586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|431287423|gb|ELF78233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|431288818|gb|ELF79574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|431298492|gb|ELF88117.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|431304244|gb|ELF92776.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|431333140|gb|ELG20355.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|431333524|gb|ELG20711.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|431334325|gb|ELG21487.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|431372059|gb|ELG57755.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|431376984|gb|ELG62123.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|431399550|gb|ELG82955.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|431425633|gb|ELH07702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|431427690|gb|ELH09633.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|431432970|gb|ELH14645.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|431459094|gb|ELH39410.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|431484661|gb|ELH64335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|431488968|gb|ELH68597.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|431492246|gb|ELH71848.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|431500550|gb|ELH79564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|431501518|gb|ELH80499.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|431513071|gb|ELH91157.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|431520010|gb|ELH97439.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|431520438|gb|ELH97764.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|431520774|gb|ELH98094.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|431538844|gb|ELI14824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|431547062|gb|ELI21444.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|431564779|gb|ELI37946.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|431580986|gb|ELI53441.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|431591980|gb|ELI62887.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|431596849|gb|ELI66790.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|431599306|gb|ELI69013.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|431611417|gb|ELI80695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|431614400|gb|ELI83554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|431622651|gb|ELI91338.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|431623350|gb|ELI92022.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|431629513|gb|ELI97875.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|431637669|gb|ELJ05723.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|431639117|gb|ELJ06988.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|431654258|gb|ELJ21317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|431656329|gb|ELJ23316.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|431666311|gb|ELJ32953.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|431668920|gb|ELJ35359.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|431682291|gb|ELJ48058.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|431682726|gb|ELJ48375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|431700396|gb|ELJ65375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|431700574|gb|ELJ65551.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|431715577|gb|ELJ79724.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|431727576|gb|ELJ91331.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|431730578|gb|ELJ94141.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
Length = 331
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|332304623|ref|YP_004432474.1| yjbN family TIM-barrel protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332171952|gb|AEE21206.1| TIM-barrel protein, yjbN family [Glaciecola sp. 4H-3-7+YE-5]
Length = 345
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 203/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN EHP+A Q+G ++P +
Sbjct: 18 LDWTDKHCRYFLRQISKHALLYTEMVTTGAIIFGKGDYLAFNEAEHPVALQLGGSDPADM 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+DCI AM+ V+I +TVK
Sbjct: 78 ARCAVLAQERGYDEVNINVGCPSDRVQNGRFGACLMAEPKTVADCINAMQKEVDIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++ Y + DF+ ++ AGC F VHAR A+LK L+PK+NR IP L Y+ VY L
Sbjct: 138 SRIGIDDMDEYKDLTDFIQVIADAGCEIFTVHARKAWLKGLSPKENRDIPPLMYDRVYAL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K++FP L + INGG+KT + LHL+ +DGVM+GRE Y NP+++++ D +Y + Q +
Sbjct: 198 KEEFPHLNLSINGGVKTLDDAALHLDKLDGVMIGREVYSNPYILADVDKRFYQD--QTPV 255
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P+R +I++ M+ Y+ +Q+ + +I RHMLGL + G +++ LS+
Sbjct: 256 PSREEIVHAMLPYVEKQMASG--ARAWNIARHMLGLFQGQPGGRVWRRYLSQ 305
>gi|416270359|ref|ZP_11642755.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|416298763|ref|ZP_11652086.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
gi|320174478|gb|EFW49618.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|320185261|gb|EFW60037.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
Length = 339
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 YP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|392543378|ref|ZP_10290515.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas piscicida JCM
20779]
Length = 339
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AI+ K L F A E P+A Q+G ++PK L
Sbjct: 30 LDWTDRHCRTFHRKLTKHAVLYTEMITTGAIIFGKGDYLAFGAHELPVALQLGGSDPKAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK +++GY E+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 90 AECAKRAEQYGYSEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKAEVDIPVTVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + T + GC FI+HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 150 TRIGIDEQDSYEFLTALIETSQAVGCDDFIIHARKAWLQGLSPKENREIPPLDYPRVYQL 209
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L I INGG+KT +E HL ++DGVM+GREAY NPF++S D Y +
Sbjct: 210 KKDYPDLHISINGGVKTLEECQHHLVHLDGVMVGREAYSNPFMLSQVDELLYGEAAFTQ- 268
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR +I M Y +++N N I RHMLG+ +N G+ F++ LS+
Sbjct: 269 -TRHQVIRSMYDYFESEMSNG--ANFWHIARHMLGIFQNQPGARGFRRHLSE 317
>gi|331006974|ref|ZP_08330216.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC1989]
gi|330419221|gb|EGG93645.1| tRNA-dihydrouridine synthase A [gamma proteobacterium IMCC1989]
Length = 310
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 210/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK-KHCLDFNAEEHPIAFQVGDNEPKK 59
M+ +DRHCR R I+++S LYTEM TT A+L + LD+N EEHP+A Q+G ++
Sbjct: 2 MDWSDRHCRYLWRLISQHSRLYTEMVTTGALLHREPARFLDYNPEEHPLALQLGGSDAGD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A + ++WGY E+NLNCGCPS+RVQNG GA LM P V+D +AM+D V+I++T+
Sbjct: 62 LARCAILAEQWGYYEVNLNCGCPSDRVQNGMIGACLMAHPEKVADAYQAMQDKVDIEVTI 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++ Y+ + +F+ +++ GC+TFIVHAR A+LK L+PK+NR++P L+Y FV+
Sbjct: 122 KHRIGIDDMDDYEGMVNFIRPIAARGCQTFIVHARKAWLKGLSPKENREVPPLEYAFVHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FPEL I+INGGIKT + +HL +DGVM+GREAY NP+L++ D + + + +
Sbjct: 182 LKQEFPELTIVINGGIKTLDDTLMHLTKVDGVMVGREAYSNPYLLAEVDQHVFGD--SHP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
IP+R I + I Y +Q+ +K +N ++RH+LGL + G+ F++ +S+
Sbjct: 240 IPSRTAIAEQYIDYCVKQM--DKGSRLNHLSRHILGLYQGEPGARAFRRHISE 290
>gi|319639148|ref|ZP_07993902.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
gi|317399587|gb|EFV80254.1| hypothetical protein HMPREF0604_01526 [Neisseria mucosa C102]
Length = 334
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 209/312 (66%), Gaps = 10/312 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + A++ G+K L FN E P+A Q+G ++P
Sbjct: 17 LDWTDRHYRFMARQITRNAWLYSEMVNSGAVVYGDKDRFLSFNEGEQPVALQLGGSDPHD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK + +GY+E+NLNCGCPS RVQ G FGA LM LV+DC+ AM+D+VEI +TV
Sbjct: 77 LAIAAKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNDVDLVADCLNAMQDAVEIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVG + CRTFIVHARNA+L L+PK+NR++P LKY ++Y
Sbjct: 137 KHRIGVDRQTEYQVVADFVGALREKTACRTFIVHARNAWLDGLSPKENREVPPLKYEYIY 196
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLP 236
LK+DFP+LEI+INGGI T +EI HL ++DGVM+GREAY NP LM ++D +Y ++ P
Sbjct: 197 RLKQDFPDLEILINGGITTNEEIAEHLKFVDGVMIGREAYHNPMLMRDWDALFYNDAHAP 256
Query: 237 -QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
QY D+ + Y R+Q+ + + + I RH LGLM +K + ++++LS L
Sbjct: 257 IQYA-----DLAAWLYAYSREQIASGRGTILRHIVRHALGLMHGLKNARTWRRMLSDATL 311
Query: 296 LTIDNFQFFLNT 307
L ++ L+
Sbjct: 312 LKDNDGSLILDA 323
>gi|126207634|ref|YP_001052859.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165975602|ref|YP_001651195.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307260603|ref|ZP_07542295.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|126096426|gb|ABN73254.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875703|gb|ABY68751.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306869680|gb|EFN01465.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 325
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIAVQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|432916245|ref|ZP_20121217.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|432923572|ref|ZP_20126126.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
gi|431450457|gb|ELH30943.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|431451570|gb|ELH32042.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|398900346|ref|ZP_10649403.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM50]
gi|398181245|gb|EJM68815.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM50]
Length = 331
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + + +
Sbjct: 201 LKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--KAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAEHLLAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|416900741|ref|ZP_11929910.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|417116352|ref|ZP_11967213.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
gi|422801769|ref|ZP_16850264.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|323965711|gb|EGB61163.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|327250393|gb|EGE62106.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|386138896|gb|EIG80051.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAETRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|307256171|ref|ZP_07537958.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306865352|gb|EFM97248.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 334
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 25 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 85 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 145 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 203
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 204 KRDFPHLNISINGGIKTIEEIKQHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENQP--- 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 261 LVTAREAVEKMLPYIAVQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 311
>gi|415797083|ref|ZP_11497925.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
gi|323162189|gb|EFZ48052.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
Length = 330
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 307
>gi|187731116|ref|YP_001882727.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
gi|187428108|gb|ACD07382.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
Length = 347
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 36 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 95
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 96 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 155
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 156 TRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 216 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 276 YP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 324
>gi|157157144|ref|YP_001465549.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|157163519|ref|YP_001460837.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|417642085|ref|ZP_12292207.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
gi|157069199|gb|ABV08454.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|157079174|gb|ABV18882.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|345389602|gb|EGX19407.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
Length = 347
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 36 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 95
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 96 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 155
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 156 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 216 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 276 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 324
>gi|301046994|ref|ZP_07194104.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|415838167|ref|ZP_11520150.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|425302971|ref|ZP_18692844.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|442605866|ref|ZP_21020680.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
gi|300301082|gb|EFJ57467.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|323190088|gb|EFZ75366.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|408209754|gb|EKI34338.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|441713128|emb|CCQ06657.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
Length = 313
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 182 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|432551644|ref|ZP_19788379.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
gi|431087965|gb|ELD93877.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|416802331|ref|ZP_11886116.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|320649492|gb|EFX18016.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
Length = 339
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDRTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|410645346|ref|ZP_11355812.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
gi|410135118|dbj|GAC04211.1| tRNA-dihydrouridine synthase A [Glaciecola agarilytica NO2]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 203/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN EHP+A Q+G ++P +
Sbjct: 18 LDWTDKHCRYFLRQISKHALLYTEMVTTGAIIFGKGDYLAFNEAEHPVALQLGGSDPADM 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+DCI AM+ V+I +TVK
Sbjct: 78 ARCAVLAQERGYDEVNINVGCPSDRVQNGRFGACLMAEPKTVADCINAMQKEVDIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++ Y + DF+ ++ AGC F VHAR A+LK L+PK+NR IP L Y+ VY L
Sbjct: 138 SRIGIDDMDEYKDLTDFIQVIADAGCEIFTVHARKAWLKGLSPKENRDIPPLMYDRVYAL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K++FP L + INGG+KT + LHL+ +DGVM+GRE Y NP+++++ D +Y + Q +
Sbjct: 198 KEEFPHLNLSINGGVKTLDDAALHLDKLDGVMIGREVYSNPYILADVDKRFYQD--QTPV 255
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P+R +I++ M+ Y+ +Q+ + +I RHMLGL + G +++ LS+
Sbjct: 256 PSREEIVHAMLPYVEKQMASG--ARAWNIARHMLGLFQGQPGGRVWRRYLSQ 305
>gi|417297156|ref|ZP_12084403.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|419218451|ref|ZP_13761435.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|419257779|ref|ZP_13800272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|420112425|ref|ZP_14622224.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|420122253|ref|ZP_14631241.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|420126332|ref|ZP_14635068.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|420130440|ref|ZP_14638932.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|424751353|ref|ZP_18179383.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|378056767|gb|EHW19006.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|378095794|gb|EHW57577.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|386260600|gb|EIJ16074.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|394392213|gb|EJE69002.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|394414595|gb|EJE88536.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|394422403|gb|EJE95764.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|394433682|gb|EJF05689.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|421939583|gb|EKT97098.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 339
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|425291271|ref|ZP_18682073.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
gi|408208406|gb|EKI33055.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLYQGIPGARQWRRYLSE 322
>gi|402306879|ref|ZP_10825912.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
gi|400373723|gb|EJP26650.1| tRNA dihydrouridine synthase A [Haemophilus sputorum HK 2154]
Length = 324
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 203/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ T+++ LYTEM T AI+ K L F+ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFTQHTLLYTEMITAPAIIHAKYDLLAFDPAENPVALQLGGSDPTQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC+KAMRD+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVADCMKAMRDAVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V + FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-QDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKTHLQFVDGVMVGREAYQNPSLLGAIDSQIFGENQP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M YI QQL +N I RHMLG + KG+ ++++ LS+
Sbjct: 252 LVTAKEAVEKMFPYIEQQLLQGVY--LNHIVRHMLGAFQQCKGARQWRRHLSE 302
>gi|260858159|ref|YP_003232050.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|419263959|ref|ZP_13806360.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|419270071|ref|ZP_13812410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|419275438|ref|ZP_13817720.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|419287034|ref|ZP_13829188.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|425382459|ref|ZP_18766425.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|432677230|ref|ZP_19912667.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
gi|257756808|dbj|BAI28310.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|378100726|gb|EHW62418.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|378105988|gb|EHW67624.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|378111959|gb|EHW73540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|378123875|gb|EHW85291.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|408292570|gb|EKJ11081.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|431209328|gb|ELF07437.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|422298082|ref|ZP_16385704.1| TIM-barrel protein, yjbN family [Pseudomonas avellanae BPIC 631]
gi|407990333|gb|EKG32439.1| TIM-barrel protein, yjbN family [Pseudomonas avellanae BPIC 631]
Length = 339
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 206/313 (65%), Gaps = 11/313 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R+++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRRLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELSDFVGTVHEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 209 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSVA--P 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
+ +R + + M YI + + N++ +TRHMLGL G+ +F+Q+LS +
Sbjct: 267 VISRHEALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLSVDIHKAEN 324
Query: 294 NLLTIDNFQFFLN 306
LL +D FL
Sbjct: 325 PLLLLDQAARFLE 337
>gi|420283680|ref|ZP_14785905.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|420301698|ref|ZP_14803733.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444977557|ref|ZP_21294612.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
gi|390778347|gb|EIO46105.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|390820291|gb|EIO86597.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444587450|gb|ELV62901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|303249850|ref|ZP_07336054.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251970|ref|ZP_07338141.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302649400|gb|EFL79585.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302651417|gb|EFL81569.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 325
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 ANCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIAVQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|398925467|ref|ZP_10661903.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM48]
gi|398172108|gb|EJM59990.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM48]
Length = 331
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSRHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--SAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAAHIAAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|419325896|ref|ZP_13867574.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
gi|378159970|gb|EHX20968.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEAHGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|284006504|emb|CBA71765.1| tRNA-dihydrouridine synthase A [Arsenophonus nasoniae]
Length = 344
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT A++ K L ++ EEHP+A Q+G NEP L
Sbjct: 34 LDWTDRHCRYFHRLLTKEALLYTEMVTTGALIYGKGDYLAYSEEEHPVALQLGGNEPTAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAM+D+ I ITVK
Sbjct: 94 AYCAKMAQQSGYDEINLNIGCPSDRVQNGRFGACLMREGGLVADCIKAMQDAATIPITVK 153
Query: 121 HRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIG+DD +SY F+ DF+ V+ + CR FI+HAR A+L L+PKQNR+IP L Y VY
Sbjct: 154 TRIGVDDDDSYAFLTDFIDKIVTDSQCRLFIIHARKAWLSGLSPKQNREIPPLDYLRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+L I++NGGIK E HL+++DGVM+GREAY+NP L++ D+ ++
Sbjct: 214 LKKDFPQLTIVVNGGIKNIDEAKQHLHHLDGVMIGREAYQNPALLTQVDVEFFDQRSLVI 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P I + M YI ++L + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 274 DP--IIAVQTMYPYIERELKQGTY--LGHITRHMLGIFQAIPGARQWRRHLSE 322
>gi|168784662|ref|ZP_02809669.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|168798291|ref|ZP_02823298.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|261225167|ref|ZP_05939448.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255581|ref|ZP_05948114.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK966]
gi|416319470|ref|ZP_11662022.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|416328425|ref|ZP_11668185.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|419072340|ref|ZP_13617933.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|419083382|ref|ZP_13628820.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|419095770|ref|ZP_13641039.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|419101535|ref|ZP_13646716.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|419106665|ref|ZP_13651781.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|420272590|ref|ZP_14774932.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|420278224|ref|ZP_14780497.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|420284688|ref|ZP_14786908.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|420295243|ref|ZP_14797347.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|420301158|ref|ZP_14803196.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|420312442|ref|ZP_14814363.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|420318167|ref|ZP_14820029.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|421815159|ref|ZP_16250851.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|421826963|ref|ZP_16262309.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|424086814|ref|ZP_17823274.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|424093232|ref|ZP_17829131.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|424099926|ref|ZP_17835150.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|424106124|ref|ZP_17840824.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|424131049|ref|ZP_17863927.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|424137366|ref|ZP_17869776.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|424336356|ref|ZP_17898537.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|424465330|ref|ZP_17915614.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|424471550|ref|ZP_17921324.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|424483824|ref|ZP_17932779.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|424490020|ref|ZP_17938529.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|424496739|ref|ZP_17944220.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|424517029|ref|ZP_17961581.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|424523145|ref|ZP_17967224.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|424559791|ref|ZP_18001160.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|424566113|ref|ZP_18007091.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|424584222|ref|ZP_18023844.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|425106972|ref|ZP_18509261.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|425134666|ref|ZP_18535494.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|425146938|ref|ZP_18546907.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|425158951|ref|ZP_18558190.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|425183121|ref|ZP_18580793.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|425196152|ref|ZP_18592897.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|425202631|ref|ZP_18598814.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|425202998|ref|ZP_18599160.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|425245851|ref|ZP_18639134.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|425257842|ref|ZP_18650313.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|425264095|ref|ZP_18656062.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|425297571|ref|ZP_18687665.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|425314257|ref|ZP_18703401.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|425326383|ref|ZP_18714685.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|425375795|ref|ZP_18760409.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|425388680|ref|ZP_18772216.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|425395410|ref|ZP_18778492.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|425401465|ref|ZP_18784147.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|425407562|ref|ZP_18789759.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|428949936|ref|ZP_19022183.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|428968634|ref|ZP_19039313.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|428974385|ref|ZP_19044672.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|429005071|ref|ZP_19073105.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|429035578|ref|ZP_19101074.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|429041686|ref|ZP_19106749.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|429057941|ref|ZP_19122198.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|429070193|ref|ZP_19133603.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444927832|ref|ZP_21247076.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444933457|ref|ZP_21252446.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444938898|ref|ZP_21257611.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444944527|ref|ZP_21262995.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444982946|ref|ZP_21299834.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444998870|ref|ZP_21315354.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|445004425|ref|ZP_21320798.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|445014945|ref|ZP_21331033.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|445020804|ref|ZP_21336751.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|445026240|ref|ZP_21342046.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|445037097|ref|ZP_21352606.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
gi|189375043|gb|EDU93459.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|189379226|gb|EDU97642.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|320190826|gb|EFW65476.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|326341906|gb|EGD65689.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|377905841|gb|EHU70100.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|377922418|gb|EHU86404.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|377936091|gb|EHU99885.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|377936617|gb|EHV00411.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|377942952|gb|EHV06675.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|390636437|gb|EIN16021.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|390637605|gb|EIN17147.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|390655447|gb|EIN33390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|390658220|gb|EIN36019.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|390679983|gb|EIN55839.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|390691203|gb|EIN65962.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|390710719|gb|EIN83721.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|390723479|gb|EIN96074.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|390754989|gb|EIO24539.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|390756577|gb|EIO26082.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|390761239|gb|EIO30536.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|390784577|gb|EIO52144.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|390792323|gb|EIO59677.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|390796476|gb|EIO63752.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|390799262|gb|EIO66435.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|390803893|gb|EIO70880.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|390820925|gb|EIO87170.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|390839958|gb|EIP04034.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|390842198|gb|EIP06064.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|390879811|gb|EIP40551.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|390889585|gb|EIP49310.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|390897500|gb|EIP56820.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|390905059|gb|EIP64010.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|390914786|gb|EIP73317.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|408061712|gb|EKG96220.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|408062719|gb|EKG97220.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|408093861|gb|EKH26909.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|408105171|gb|EKH37371.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|408111993|gb|EKH43683.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|408133493|gb|EKH63390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|408156706|gb|EKH84906.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|408169757|gb|EKH97002.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|408176509|gb|EKI03357.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|408209314|gb|EKI33913.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|408223192|gb|EKI46984.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|408236855|gb|EKI59731.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|408287627|gb|EKJ06484.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|408302509|gb|EKJ20013.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|408303695|gb|EKJ21144.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|408315132|gb|EKJ31461.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|408320768|gb|EKJ36839.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|408543932|gb|EKK21405.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|408577476|gb|EKK53049.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|408587861|gb|EKK62485.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|408598120|gb|EKK72080.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|427203743|gb|EKV74041.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|427216870|gb|EKV85959.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|427223476|gb|EKV92220.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|427254977|gb|EKW21253.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|427279883|gb|EKW44283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|427288468|gb|EKW52099.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|427308480|gb|EKW70861.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|427314711|gb|EKW76747.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444534568|gb|ELV14789.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444535507|gb|ELV15578.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444544890|gb|ELV23876.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444553672|gb|ELV31276.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444588248|gb|ELV63633.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444602466|gb|ELV77207.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|444611520|gb|ELV85847.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|444619373|gb|ELV93414.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|444625634|gb|ELV99454.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|444634484|gb|ELW07956.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|444641079|gb|ELW14320.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|398846436|ref|ZP_10603413.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM84]
gi|398252585|gb|EJN37765.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM84]
Length = 312
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L N H L + EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSKHTLLYTEMVTTGALLHNDAHRFLRHDVSEHPLALQLGGSVPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 62 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y+
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYDVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D +++
Sbjct: 182 LKADFPDLEIVLNGGIKTLAECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFAS--DAA 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + G+ +F+Q+LS
Sbjct: 240 VVSRSEAMAQLRPYIVAHMESGGA--MHHVTRHILGLGQGFPGARRFRQLLSA 290
>gi|425320239|ref|ZP_18708993.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
gi|408234364|gb|EKI57389.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
Length = 331
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|331650053|ref|ZP_08351126.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|419863045|ref|ZP_14385606.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|427807268|ref|ZP_18974335.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|432394795|ref|ZP_19637605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|432614135|ref|ZP_19850284.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443615558|ref|YP_007379414.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
gi|331040998|gb|EGI13155.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|388343546|gb|EIL09478.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|412965450|emb|CCK49383.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|430912545|gb|ELC33718.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|431145456|gb|ELE47106.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443420066|gb|AGC84970.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|82546382|ref|YP_410329.1| tRNA-dihydrouridine synthase A [Shigella boydii Sb227]
gi|417684897|ref|ZP_12334230.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|420327529|ref|ZP_14829273.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|420355686|ref|ZP_14856742.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|420383439|ref|ZP_14882851.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|421684504|ref|ZP_16124289.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
gi|81247793|gb|ABB68501.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332087840|gb|EGI92966.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|391247559|gb|EIQ06807.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|391271109|gb|EIQ29985.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|391296500|gb|EIQ54590.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|404336104|gb|EJZ62567.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 YP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|145698340|ref|NP_418473.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238903158|ref|YP_002928954.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|293402687|ref|ZP_06646784.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|293407781|ref|ZP_06651621.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|293476353|ref|ZP_06664761.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|298378215|ref|ZP_06988099.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|383181363|ref|YP_005459368.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|387609842|ref|YP_006098698.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|419872880|ref|ZP_14394895.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444961024|ref|ZP_21278826.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444988293|ref|ZP_21305054.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|450229414|ref|ZP_21897771.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|450254166|ref|ZP_21902519.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
gi|3183570|sp|P32695.3|DUSA_ECOLI RecName: Full=tRNA-dihydrouridine synthase A
gi|38604936|sp|Q8X5V6.2|DUSA_ECO57 RecName: Full=tRNA-dihydrouridine synthase A
gi|145693211|gb|AAC77019.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238863713|gb|ACR65711.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|284924142|emb|CBG37241.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|291320806|gb|EFE60248.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|291429602|gb|EFF02616.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|291472032|gb|EFF14514.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|298280549|gb|EFI22050.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|388333035|gb|EIK99678.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444568211|gb|ELV44901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444588723|gb|ELV64087.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|449313057|gb|EMD03287.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|449313516|gb|EMD03722.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
Length = 330
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 307
>gi|290512395|ref|ZP_06551762.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
gi|289775390|gb|EFD83391.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
Length = 331
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 20 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 140 TRIGIDDQDSYEFLCEFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L L ++DGVM+GREAY+NP ++++ D +
Sbjct: 200 LKRDFPHLTMAINGGIKSLDEARLQLEHMDGVMVGREAYQNPGILASVDREIFGIAGADA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|123444030|ref|YP_001008000.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090991|emb|CAL13874.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 342
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ S LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQSLLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 88 AHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEASLVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDELDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENREVPPLDYARVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL Y+DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKRDFPTLTIAINGGVKTLAEAKEHLKYVDGVMMGREAYQNPTILTQVDRELFD--PNAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALFPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|419078276|ref|ZP_13623767.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|419134258|ref|ZP_13679076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|425270107|ref|ZP_18661709.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
gi|377916323|gb|EHU80410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|377969396|gb|EHV32773.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|408179558|gb|EKI06216.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|293394136|ref|ZP_06638436.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
gi|291423114|gb|EFE96343.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
Length = 349
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L ++ EEHPIA Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRLLSKETLLYTEMVTTGAIVHGKGDYLAYSEEEHPIALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 94 AHCAKLAEQRGYDEINLNVGCPSDRVQNGMFGACLMGQATLVADCIKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+ TV+ G C F +HAR A+L L+PKQNR++P L Y VY
Sbjct: 154 TRIGIDEQDSYAFLCDFIETVAGRGECEMFTIHARKAWLSGLSPKQNREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP ++ D + + Q
Sbjct: 214 LKRDFPALTIAINGGVKTLDEARQHLQHLDGVMMGREAYQNPGILLQVDRELFGS--QAP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI ++L N + ITRH+LGL + I G+ ++++ LS+
Sbjct: 272 LQDSVAAIEALYPYIERELANGTY--LGHITRHILGLFQGIPGARQWRRHLSE 322
>gi|206576636|ref|YP_002241010.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
gi|206565694|gb|ACI07470.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
Length = 332
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 141 TRIGIDDQDSYEFLCEFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L L ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLDEARLQLEHMDGVMVGREAYQNPGILASVDREIFGIAGADA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|194426795|ref|ZP_03059348.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|194415131|gb|EDX31400.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|195183268|dbj|BAG66809.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H-]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEAHGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|416790530|ref|ZP_11881227.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|416833963|ref|ZP_11900652.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|320644173|gb|EFX13238.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|320665665|gb|EFX32702.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
Length = 339
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|420339091|ref|ZP_14840642.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
gi|391256784|gb|EIQ15907.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
Length = 345
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 YP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|359298827|ref|ZP_09184666.1| tRNA-dihydrouridine synthase A [Haemophilus [parainfluenzae] CCUG
13788]
Length = 324
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 202/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ T+++ LYTEM T AI+ K L F+ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFTQHTLLYTEMITAPAIIHAKYDLLAFDPAENPVALQLGGSDPTQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DC+KAMRD+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVADCMKAMRDAVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V + FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-QDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIDEIKTHLQFVDGVMVGREAYQNPSLLGAIDSQIFGENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + +M YI QQL+ +N I RHMLG + KG+ ++++ LS+
Sbjct: 252 LVTAKAAVEKMFPYIEQQLSQGVY--LNHIVRHMLGAFQQCKGARQWRRHLSE 302
>gi|415785370|ref|ZP_11492920.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
gi|323155612|gb|EFZ41787.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
Length = 347
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 36 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 95
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 96 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVVSIPVTVK 155
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 156 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 216 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 276 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 324
>gi|218702713|ref|YP_002410342.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|386626991|ref|YP_006146719.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
gi|218372699|emb|CAR20575.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|349740727|gb|AEQ15433.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
Length = 345
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGVPGARQWRRYLSE 322
>gi|332280828|ref|ZP_08393241.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|415814116|ref|ZP_11505746.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|417224959|ref|ZP_12028250.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|417280697|ref|ZP_12067997.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|417605017|ref|ZP_12255574.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|417626327|ref|ZP_12276610.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|417669676|ref|ZP_12319205.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|419319630|ref|ZP_13861420.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|419331777|ref|ZP_13873363.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|419378314|ref|ZP_13919322.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|422373781|ref|ZP_16454079.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|422815584|ref|ZP_16863799.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|432634053|ref|ZP_19869966.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
gi|323171192|gb|EFZ56840.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|324014847|gb|EGB84066.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|332103180|gb|EGJ06526.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|345346319|gb|EGW78649.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|345369877|gb|EGX01857.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|378163273|gb|EHX24226.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|378164171|gb|EHX25118.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|378213172|gb|EHX73490.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|385541035|gb|EIF87847.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|386200007|gb|EIH98998.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|386245026|gb|EII86756.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|397782131|gb|EJK92999.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|431166524|gb|ELE66839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
Length = 345
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|312965642|ref|ZP_07779871.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|417230595|ref|ZP_12032092.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|417758551|ref|ZP_12406606.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|418999881|ref|ZP_13547451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|419004949|ref|ZP_13552451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|419010602|ref|ZP_13558003.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|419011206|ref|ZP_13558576.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|419021249|ref|ZP_13568540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|419026721|ref|ZP_13573927.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|419031864|ref|ZP_13578996.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|419037570|ref|ZP_13584636.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|419042558|ref|ZP_13589567.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|419297634|ref|ZP_13839663.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|419342682|ref|ZP_13884128.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|444972304|ref|ZP_21289626.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
gi|312289616|gb|EFR17507.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|377838052|gb|EHU03178.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|377838136|gb|EHU03260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|377840340|gb|EHU05413.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|377855260|gb|EHU20133.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|377856032|gb|EHU20893.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|377864740|gb|EHU29532.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|377869597|gb|EHU34308.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|377871003|gb|EHU35671.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|377872882|gb|EHU37524.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|377885003|gb|EHU49509.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|378137427|gb|EHW98703.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|378181451|gb|EHX42122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|386205848|gb|EII10355.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|444574947|gb|ELV51205.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
Length = 345
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|420376104|ref|ZP_14875894.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|391307140|gb|EIQ64879.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
Length = 332
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSSQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC++AMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVEAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ VS G C FI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 141 TRIGIDDQDSYEFLCDFINMVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYDRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D ++ +
Sbjct: 201 LKRDFPQLTMSINGGIKSLEEAKTHLQHMDGVMVGREAYQNPGILASVDREIFAATTEDT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIEREL--SKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 309
>gi|375132152|ref|YP_004994253.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
gi|315181327|gb|ADT88241.1| tRNA-dihydrouridine synthase A [Vibrio furnissii NCTC 11218]
Length = 319
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 199/294 (67%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 5 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPVDL 64
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM+ V+I +TVK
Sbjct: 65 ARCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKAVVDIPVTVK 124
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 125 TRIGIDDQDSYEFLTHFVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 184
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L I +NGG+K+ E HL ++DGVM+GREAY++P+L++ D + + P
Sbjct: 185 LKQDFPQLTIAVNGGVKSLAEAKEHLQHLDGVMIGREAYQSPYLLAEVDQQIFGLDTP-- 242
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QQL + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 243 -VKKRSQVVQEMYPYIEQQLAQGSY--LGHITRHMLGLFQNMPGARQWRRHISE 293
>gi|32034537|ref|ZP_00134701.1| COG0042: tRNA-dihydrouridine synthase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 329
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 20 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 80 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 140 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 199 KRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 256 LVTAREAVEKMLPYIAVQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 306
>gi|425898589|ref|ZP_18875180.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892157|gb|EJL08635.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 333
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 23 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHERFLRHDESEHPLALQLGGSTPAD 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 83 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRDAVSIPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 143 KHRIGINGRDSYEELCDFVGQVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 203 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 261 VISRAEALTQLRPYIARHLATGGA--MHHITRHVLGLGTGFPGARKFRQLLS 310
>gi|331655869|ref|ZP_08356857.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
gi|331046223|gb|EGI18313.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
Length = 345
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPALDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIECELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|307247131|ref|ZP_07529183.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251674|ref|ZP_07533579.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856380|gb|EFM88531.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860871|gb|EFM92879.1| tRNA-dihydrouridine synthase A [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 329
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 20 LDWTTRHCRYFHRQFSRHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 80 ANCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 140 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 199 KRDFPHLNISINGGIKTIEEIKRHLAFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 256 LVTAREAVEKMLPYIAVQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 306
>gi|188535214|ref|YP_001909011.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
gi|188030256|emb|CAO98143.1| tRNA-dihydrouridine synthase A [Erwinia tasmaniensis Et1/99]
Length = 332
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+TR + LYTEM TT AI+ K L F+ EE P+A Q+G ++P L
Sbjct: 17 LDWTDRHCRYFHRQLTRQTLLYTEMVTTGAIIHGKGDYLAFSREEQPVALQLGGSDPAAL 76
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GY EINLN GCPS+RVQNG FGA LM + LV+D IKAMRD + +TVK
Sbjct: 77 AQCAKLAEQRGYQEINLNVGCPSDRVQNGRFGACLMGEARLVADGIKAMRDVTSLPVTVK 136
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 137 TRIGIDDQDSYAFLCDFIRTVSEQGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP L + +NGG+KT +E +HL ++DGVM+GREAY+NP L++ D + LP
Sbjct: 197 LKRDFPHLTLSLNGGVKTLEEAKVHLQHLDGVMMGREAYQNPGLLAQVDRELFGCTLPDT 256
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L K + +TRHMLGL + + G+ ++++ LS+
Sbjct: 257 D---PVAVVRSMYPYIEREL--AKGTYLGHVTRHMLGLFQGVPGARQWRRYLSE 305
>gi|398971892|ref|ZP_10683849.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM30]
gi|398138034|gb|EJM27067.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM30]
Length = 331
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 201 LKADFPELEIVLNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--SAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L + ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAEHLQSGGA--MHHITRHVLGLGSGFPGARKFRQLLS 308
>gi|452124904|ref|ZP_21937488.1| tRNA-dihydrouridine synthase A [Bordetella holmesii F627]
gi|452128311|ref|ZP_21940888.1| tRNA-dihydrouridine synthase A [Bordetella holmesii H558]
gi|451924134|gb|EMD74275.1| tRNA-dihydrouridine synthase A [Bordetella holmesii F627]
gi|451925358|gb|EMD75496.1| tRNA-dihydrouridine synthase A [Bordetella holmesii H558]
Length = 323
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/298 (47%), Positives = 201/298 (67%), Gaps = 6/298 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + ++ LYTEM TT A+L GN + LDF+ EHP+A Q+G +EP
Sbjct: 2 IDVTDRHCRFFHRLLAPHARLYTEMITTGALLHGNVERHLDFDDAEHPVALQLGGSEPAA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +A++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+V I +TV
Sbjct: 62 LAAAARLGQQWGYDEINLNCGCPSERVQRGAFGACLMAEPDLVADCIKAMQDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D +SY FVRDFVG + + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 122 KHRLGLDYDDSYAFVRDFVGKLHATGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVAEQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
L++DFP+ I++NGG+ + DGVMLGR A+ P ++S L + P +
Sbjct: 182 LRRDFPDCVIVLNGGLADAGQAVQAFARFDGVMLGRAAWHTPRVLSEVSLRLW---PSTR 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+P+ +++ M+ Y +Q+ + + R MLGL+ N G+ ++++LS P L
Sbjct: 239 LPSDAQVVDAMVEYTARQIARG--VPLRVMLRPMLGLVNNQSGARSWRRLLSDPGRLA 294
>gi|386020310|ref|YP_005938334.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 4166]
gi|327480282|gb|AEA83592.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri DSM 4166]
Length = 322
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 202/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ+++++ LYTEM TT A+L GN L ++ EHP+A Q+G + P
Sbjct: 12 MDWTDRHCRFFLRQLSKHALLYTEMVTTGALLHGNTARFLRYDETEHPLALQLGGSVPGD 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +++TV
Sbjct: 72 LAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVGVEVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A LK L+PKQNR +P L+Y+
Sbjct: 132 KHRIGINGRDSYSQLCDFVGQVREAGCRSFTVHARIAILKGLSPKQNRDVPPLRYDVAAQ 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D + + SN P
Sbjct: 192 LKRDFPDLEIILNGGIKTLEECREHLQTFDGVMLGREAYHNPYLLAQVDSSLFGSNAP-- 249
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + L ++ +TRH+LGL + G+ +F+Q+LS
Sbjct: 250 -VISRAQALRNMRPYIERHLAEGGA--MHHVTRHVLGLGQGFPGARRFRQLLS 299
>gi|423142707|ref|ZP_17130345.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049298|gb|EHY67193.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 339
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 28 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 88 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL Y+DGVM+GREAY+NP +++ D +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKEHLRYMDGVMVGREAYQNPGILAAVDREIFGADTTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 268 DP--VVVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGVPGARQWRRYLSE 316
>gi|260870808|ref|YP_003237210.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|415823434|ref|ZP_11511809.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|417200988|ref|ZP_12017672.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|417206238|ref|ZP_12019316.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|417594583|ref|ZP_12245268.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|419199876|ref|ZP_13743157.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|419206262|ref|ZP_13749409.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|419224200|ref|ZP_13767105.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|419889320|ref|ZP_14409738.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419893875|ref|ZP_14413826.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|420089152|ref|ZP_14600989.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420094959|ref|ZP_14606505.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|424773293|ref|ZP_18200356.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257767164|dbj|BAI38659.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|323175935|gb|EFZ61527.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|345330857|gb|EGW63320.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|378041616|gb|EHW04075.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|378042064|gb|EHW04516.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|378059387|gb|EHW21587.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|386187447|gb|EIH76266.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|386197721|gb|EIH91920.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|388357917|gb|EIL22415.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|388365760|gb|EIL29536.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|394388842|gb|EJE66080.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394394652|gb|EJE71212.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|421936655|gb|EKT94316.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 345
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|333900306|ref|YP_004474179.1| hypothetical protein Psefu_2114 [Pseudomonas fulva 12-X]
gi|333115571|gb|AEF22085.1| TIM-barrel protein, yjbN family [Pseudomonas fulva 12-X]
Length = 334
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/313 (46%), Positives = 204/313 (65%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q+G + P +
Sbjct: 24 MDWTDHHCRYFLRQLSQHALLYTEMVTTGALLHGDTARFLHYDQSEHPVALQLGGSNPAE 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM D+V I +TV
Sbjct: 84 LAACARLAEQAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMGDAVSIPVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID +SY + DFVG V AGCR+F VHAR A L L+PK+NR+IP L+Y+
Sbjct: 144 KHRIGIDGRDSYAELCDFVGQVRDAGCRSFTVHARIAILSGLSPKENREIPPLRYDIAAQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS--NLPQ 237
LK+DF +LE+I+NGGIKT + HL+ DGVMLGREAY NP+L++ D ++ N P
Sbjct: 204 LKQDFADLELILNGGIKTLEACQEHLHTFDGVMLGREAYHNPYLLAEVDQQLFASTNTPV 263
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + M YI + + + ++ +TRHMLGL + G+ +F+Q+LS +
Sbjct: 264 ----SRHEAMLAMRPYIERHMAAGGL--MHHVTRHMLGLAQGFPGARRFRQLLSADIHKS 317
Query: 298 IDNFQFFLNTLNI 310
D F I
Sbjct: 318 TDPLAIFDQAAQI 330
>gi|119776187|ref|YP_928927.1| tRNA-dihydrouridine synthase A [Shewanella amazonensis SB2B]
gi|119768687|gb|ABM01258.1| TIM-barrel protein, yjbN family [Shewanella amazonensis SB2B]
Length = 326
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R +++ + LYTEM TT AIL K L +N EEHP+A Q+G ++PK L
Sbjct: 15 LDWTDRHYRYFARLMSKEALLYTEMVTTGAILHGKGDYLAYNQEEHPLALQLGGSDPKDL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+N+N GCPS+RVQNG FGA LM +P LV++C+ AMR V + +TVK
Sbjct: 75 ATCAKLAEARGYDEVNINVGCPSDRVQNGRFGACLMAEPKLVAECVDAMRQQVSVPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ DFV TVS+AGC TFI+HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 135 TRIGIDEQDSYGFLTDFVETVSAAGCDTFIIHARKAWLQGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P+L I INGG+ + ++ HL +DGVM+GREAY+NP+++++ D +
Sbjct: 195 KRDYPQLSISINGGVTSIEQAKTHLAQLDGVMVGREAYQNPYILASVDTELCGK--PAVV 252
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++I +++ YI + L + +N I+RH++GL + + GS +++ LS+
Sbjct: 253 SSREEVIGKLLPYIGKHLADG--GRLNHISRHIIGLYQGLPGSRAWRRHLSE 302
>gi|419212642|ref|ZP_13755697.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|419229763|ref|ZP_13772590.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|419235432|ref|ZP_13778190.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|419240583|ref|ZP_13783281.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|419246276|ref|ZP_13788900.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|419252005|ref|ZP_13794566.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|419874397|ref|ZP_14396333.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|419884759|ref|ZP_14405636.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|419902433|ref|ZP_14421648.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|419909781|ref|ZP_14428319.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|420099908|ref|ZP_14611111.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|420107627|ref|ZP_14617949.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|424758029|ref|ZP_18185751.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|378046718|gb|EHW09092.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|378066995|gb|EHW29122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|378072023|gb|EHW34087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|378078096|gb|EHW40087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|378085455|gb|EHW47342.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|378088356|gb|EHW50210.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|388351112|gb|EIL16390.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|388352870|gb|EIL17953.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|388372678|gb|EIL36095.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|388373883|gb|EIL37107.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|394412068|gb|EJE86246.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|394422115|gb|EJE95516.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|421948823|gb|EKU05823.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 345
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|194437343|ref|ZP_03069441.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
gi|194423899|gb|EDX39888.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
Length = 345
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|167032718|ref|YP_001667949.1| tRNA-dihydrouridine synthase A [Pseudomonas putida GB-1]
gi|166859206|gb|ABY97613.1| TIM-barrel protein, yjbN family [Pseudomonas putida GB-1]
Length = 336
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-KKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L N + L +A EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKQTLLYTEMVTTGALLHNDAQRFLRHDASEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEDAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D +++
Sbjct: 206 LKADFPDLEIVLNGGIKTLDECQKHLETFDGVMLGREAYHNPYLLAEVDQQLFAS--DAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLS 313
>gi|375004122|ref|ZP_09728457.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353073460|gb|EHB39225.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 332
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTISINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|15804641|ref|NP_290682.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EDL933]
gi|12519000|gb|AAG59247.1|AE005638_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 345
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFXGIPGARQWRRYLSE 322
>gi|416338796|ref|ZP_11674797.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|432799971|ref|ZP_20033970.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
gi|320193408|gb|EFW68045.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|431353327|gb|ELG40081.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
Length = 331
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLGEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|317046530|ref|YP_004114178.1| yjbN family TIM-barrel protein [Pantoea sp. At-9b]
gi|316948147|gb|ADU67622.1| TIM-barrel protein, yjbN family [Pantoea sp. At-9b]
Length = 331
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ + LYTEM TT AI+ K L F+ +EHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLSGDTLLYTEMVTTGAIIHGKGDYLAFSEDEHPVALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A++ + GYDEINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 76 AQCAQLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAALVADCIKAMRDVVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDDQDSYAFLCDFVGTVAQQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIK+ E +HL ++DGVM+GREAY+NP +++ D +
Sbjct: 196 LKRDFPQLTMAINGGIKSLAEAKVHLQHMDGVMMGREAYQNPGILAQVDRELFGRDTPAV 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--VAVVRSMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRYLSE 304
>gi|432619360|ref|ZP_19855456.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
gi|431150292|gb|ELE51349.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
Length = 331
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDV 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|428935408|ref|ZP_19008884.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|426300609|gb|EKV62885.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
Length = 332
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD+V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGTFGACLMGNAPLVADCIKAMRDAVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 141 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPDILASVDREIFGVAGADA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|407692865|ref|YP_006817654.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
gi|407388922|gb|AFU19415.1| tRNA-dihydrouridine synthase A [Actinobacillus suis H91-0380]
Length = 323
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTVDEIKQHLAFVDGVMVGREAYQNPSLLGEIDSQIFDENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIEAQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|395499877|ref|ZP_10431456.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. PAMC 25886]
Length = 336
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT AIL G+ + L N EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKNALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+K M+D+V I +TV
Sbjct: 86 LAACARMAQDAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKGMQDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V +AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVKNAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEII+NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKQDFPELEIILNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VITRAEALAQLRPYIAEHLATG--GSMHHITRHVLGLGTGFPGARKFRQLLS 313
>gi|336248184|ref|YP_004591894.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
gi|334734240|gb|AEG96615.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
Length = 332
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAALVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 141 TRIGIDDRDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLAEAKQQLEHMDGVMVGREAYQNPGILASVDREIFGVDGADA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|398862118|ref|ZP_10617731.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM79]
gi|398231392|gb|EJN17383.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM79]
Length = 331
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + + +
Sbjct: 201 LKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--KAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAEHLLAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|432443665|ref|ZP_19685986.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|432448740|ref|ZP_19691034.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|433016399|ref|ZP_20204716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|433025981|ref|ZP_20213940.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|433326392|ref|ZP_20403233.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|450196390|ref|ZP_21892861.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
gi|430960263|gb|ELC78419.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|430970425|gb|ELC87497.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|431525308|gb|ELI02105.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|431529138|gb|ELI05841.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|432345486|gb|ELL39989.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|449315504|gb|EMD05646.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
Length = 331
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|423728349|ref|ZP_17702088.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
gi|424150269|ref|ZP_17881622.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390696874|gb|EIN71315.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390736081|gb|EIO07432.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
Length = 345
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKHDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|325277336|ref|ZP_08142961.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. TJI-51]
gi|324097526|gb|EGB95747.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. TJI-51]
Length = 336
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L N L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKQTLLYTEMVTTGALLHNDADRFLRHDVSEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEQAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVATPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + + +
Sbjct: 206 LKADFPDLEIVLNGGIKTLGECQAHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--EAA 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 VISRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 314
>gi|398871378|ref|ZP_10626693.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM74]
gi|398206319|gb|EJM93086.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM74]
Length = 312
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 122 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 182 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 240 VITRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 289
>gi|432856293|ref|ZP_20083733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
gi|431396119|gb|ELG79605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
Length = 345
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDV 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIEHELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|424143901|ref|ZP_17875730.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
gi|390695683|gb|EIN70198.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
Length = 339
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKHDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|386032623|ref|YP_005952536.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|424828429|ref|ZP_18253157.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|449060398|ref|ZP_21738057.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
gi|339759751|gb|AEJ95971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|414705834|emb|CCN27538.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|448873903|gb|EMB08971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
Length = 332
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 141 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|422110551|ref|ZP_16380525.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378640|emb|CBX22711.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 336
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK ++ +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAVEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP+LEIIINGGI + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPDLEIIINGGITANEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 256 RSPIEYADLVQLLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDAALLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 GNDGGLILEA 325
>gi|429088299|ref|ZP_19151031.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
gi|426508102|emb|CCK16143.1| tRNA dihydrouridine synthase A [Cronobacter universalis NCTC 9529]
Length = 331
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSDEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 80 AHCAKLAEARGYDEVNLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFVGTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + INGGIKT ++ HL ++DGVM+GREAY+NP L+++ D + Q
Sbjct: 200 LKRDFPKLTMSINGGIKTLDDVKAHLEHMDGVMVGREAYQNPGLLASVDREIFGLDVQDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L K + ITRHMLGL + I G ++ LS+
Sbjct: 260 DP--VAVVRAMYPYIEDEL--AKGAYLGHITRHMLGLFQGIPGRWVRRRYLSE 308
>gi|421777222|ref|ZP_16213820.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|442598785|ref|ZP_21016534.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|408457717|gb|EKJ81510.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|441652543|emb|CCQ02085.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 339
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|331675581|ref|ZP_08376328.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
gi|331067189|gb|EGI38597.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
Length = 345
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDV 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|104782703|ref|YP_609201.1| tRNA-dihydrouridine synthase A [Pseudomonas entomophila L48]
gi|95111690|emb|CAK16414.1| tRNA-dihydrouridine synthase A [Pseudomonas entomophila L48]
Length = 333
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L N H L + EHP+A Q+G + P
Sbjct: 23 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLHNDAHRFLRHDDSEHPLALQLGGSVPAD 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D+V I +TV
Sbjct: 83 LAACARLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMQDAVSIPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 143 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LE+++NGGIKT +E HL DGVMLGREAY NP+L++ D + +
Sbjct: 203 LKADFPDLELVLNGGIKTLEECRTHLETFDGVMLGREAYHNPYLLAEVDQQLFGS--SEP 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 261 VISRAEAMAKLRPYIVAHMESGGA--MHHITRHILGLGQGFPGARRFRQLLSA 311
>gi|188494852|ref|ZP_03002122.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
gi|188490051|gb|EDU65154.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
Length = 347
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 36 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 95
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 96 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 155
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 156 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 216 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 276 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 324
>gi|392377515|ref|YP_004984674.1| tRNA-dihydrouridine synthase A [Azospirillum brasilense Sp245]
gi|356878996|emb|CCC99890.1| tRNA-dihydrouridine synthase A [Azospirillum brasilense Sp245]
Length = 329
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 203/293 (69%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +++ + LYTEM TT A+L G+++ L ++A EHP+A Q+G ++P +
Sbjct: 12 MDWTDRHCRTFHRLLSKNTLLYTEMVTTGAVLHGDRERLLGYDAAEHPVALQLGGSDPAE 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I ++WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMR++V I ITV
Sbjct: 72 LAACARIAEEWGYDEVNLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMREAVSIPITV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + FV TVS+AGC FIVHAR A+LK L+PK+NR IP L+Y+ V+
Sbjct: 132 KSRIAIDEMEEWPTLDQFVRTVSAAGCTHFIVHARKAWLKGLSPKENRDIPPLRYDLVHR 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L I INGGI+T E + HL +D VM+GR AY+ P+++++ D + P
Sbjct: 192 LKQENPQLTIAINGGIRTLDEAEGHLATLDSVMIGRAAYETPYILADADRRLFGGEPG-- 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P R ++ M Y +++ +++ITRHMLGL + + G+ +++ +S+
Sbjct: 250 -PDRYAVVEAMAAYAEERMRQG--APLSAITRHMLGLFQGLPGARAWRRHISE 299
>gi|425079376|ref|ZP_18482473.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405607888|gb|EKB80840.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
Length = 313
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD+V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGTFGACLMGNAPLVADCIKAMRDAVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 122 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPDILASVDREIFGVAGADA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|90408335|ref|ZP_01216499.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
gi|90310566|gb|EAS38687.1| NifR3/Smm1 family protein [Psychromonas sp. CNPT3]
Length = 333
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 149/292 (51%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L EHP+A Q+G L
Sbjct: 21 LDWTDRHCRHFHRILSKETLLYTEMVTTGAILYGKGDYLQKGDAEHPVALQLGGFAAVDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+A ++ GYDEINLN GCPS+RVQNG FGA LM +P LV+D + AMRD+ + ITVK
Sbjct: 81 AKAALAGKERGYDEINLNIGCPSDRVQNGRFGACLMAEPELVADAVAAMRDATGLPITVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ DF+ V + GC FI+HAR A+L L+PKQNR +P L ++ VY L
Sbjct: 141 TRIGIDDLDSYEFLCDFISKVHAKGCDNFIIHARKAWLSGLSPKQNRDVPPLDHDRVYQL 200
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP+L I INGGIKT E HL ++DGVMLGREAY NP+L+S D + K
Sbjct: 201 KKDFPQLMIAINGGIKTLDECKTHLQHLDGVMLGREAYANPYLLSQVDKALFGCTK--KP 258
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR +++ +M YI QQL+N +N + RHMLGL + + G+ +++ LS+
Sbjct: 259 LTRFEVLEQMYPYIEQQLSNGSY--LNHMGRHMLGLFQGLPGARAWRRHLSE 308
>gi|425078874|ref|ZP_18481977.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425089506|ref|ZP_18492599.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425094197|ref|ZP_18497280.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|405589675|gb|EKB63240.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405599947|gb|EKB73122.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405610070|gb|EKB82895.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
Length = 313
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 122 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|209694000|ref|YP_002261928.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
gi|208007951|emb|CAQ78084.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
Length = 338
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 202/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ ++ LY+EM TT AI+ K L +N EEHP+A Q+G + K L
Sbjct: 25 LDWTDRHCRYFHRQLSEHALLYSEMITTGAIIHGKGDFLAYNEEEHPLALQLGGSNAKDL 84
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ GYDEINLN GCPS+RVQNG FGA LM P LV++CI M+ V+I +TVK
Sbjct: 85 AHCAKLAADRGYDEINLNVGCPSDRVQNGRFGACLMADPELVAECIAEMKAVVDIPVTVK 144
Query: 121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 145 TRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
+KKDFP+L I +NGGIKT +E HL ++DGVM+GREAY++P+L++ D + S+ P
Sbjct: 205 IKKDFPQLIIAVNGGIKTLEEAKEHLAHLDGVMIGREAYQSPYLLAEVDQQLFGSDKP-- 262
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R +I+ M YI +QL N ++ ITRHMLGL +++ G+ ++++ +S+
Sbjct: 263 -IKKRREIVESMYPYIERQLENG--AHLGHITRHMLGLFQSMPGARQWRRYISE 313
>gi|238789911|ref|ZP_04633691.1| tRNA-dihydrouridine synthase A [Yersinia frederiksenii ATCC 33641]
gi|238721984|gb|EEQ13644.1| tRNA-dihydrouridine synthase A [Yersinia frederiksenii ATCC 33641]
Length = 343
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+E+NLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEVNLNVGCPSDRVQNGRFGACLMAEASLVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL Y+DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKRDFPALTIAINGGVKTLAEAKEHLKYLDGVMMGREAYQNPSILTQVDRELFD--PNAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|300714901|ref|YP_003739704.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
gi|299060737|emb|CAX57844.1| tRNA-dihydrouridine synthase A [Erwinia billingiae Eb661]
Length = 331
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+TR+S LYTEM TT AI+ K L +N E P+A Q+G + L
Sbjct: 16 LDWTDRHCRYFLRQLTRHSLLYTEMVTTGAIVHGKGDYLAWNQAEQPVALQLGGYDAAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK + GY+EINLN GCPS+RVQNG FGA LM +P LV+D IKAMRD V I +TVK
Sbjct: 76 AECAKQAEARGYNEINLNVGCPSDRVQNGRFGACLMGEPALVADGIKAMRDQVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ +F+ VS GC +FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDEQDSYEFLCEFIRQVSEQGGCDSFIIHARKAWLSGLSPKENREIPPLDYERVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L + INGGIK+ E +HL ++DGVM+GREAY+NP L++ D + S LP
Sbjct: 196 LKRDFPHLTMSINGGIKSLAEAKVHLQHVDGVMMGREAYQNPGLLAQVDRELFGSELP-- 253
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 254 -APDPVAVVRAMYPYIEAELANGTY--LGHITRHMLGLFQGIPGARQWRRHLSE 304
>gi|51594726|ref|YP_068917.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
32953]
gi|186893729|ref|YP_001870841.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis PB1/+]
gi|51588008|emb|CAH19612.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186696755|gb|ACC87384.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis PB1/+]
Length = 345
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQVDRELFD--PHAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALYPYIEQELSQGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|398841523|ref|ZP_10598739.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM102]
gi|398108208|gb|EJL98186.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM102]
Length = 333
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 23 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 83 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 143 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + + +
Sbjct: 203 LKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--KAP 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 261 VISRAEALAQLRPYIAEHLLAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 310
>gi|331680980|ref|ZP_08381617.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
gi|331081201|gb|EGI52362.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
Length = 345
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|397166048|ref|ZP_10489494.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
gi|396092210|gb|EJI89774.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
Length = 339
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 28 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 88 AHCAKLAQARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+GTV+ G C +F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFIGTVAGKGECESFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L++ INGGIK+ +E HL ++DGVM+GREAY+NP +++ D Y
Sbjct: 208 LKRDFPHLKMAINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIYGA--DVV 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 266 DADPVAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGVPGARQWRRYLSE 316
>gi|419974839|ref|ZP_14490255.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|420028064|ref|ZP_14542048.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032652|ref|ZP_14546465.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397344806|gb|EJJ37936.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397392208|gb|EJJ84012.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397397139|gb|EJJ88820.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
Length = 331
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 20 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 140 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 200 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|378976432|ref|YP_005224573.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419980655|ref|ZP_14495938.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985812|ref|ZP_14500950.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991568|ref|ZP_14506532.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997577|ref|ZP_14512372.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003934|ref|ZP_14518576.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009433|ref|ZP_14523916.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015925|ref|ZP_14530222.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021222|ref|ZP_14535404.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420038193|ref|ZP_14551842.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044233|ref|ZP_14557715.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420049952|ref|ZP_14563256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055546|ref|ZP_14568712.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060154|ref|ZP_14573156.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420067204|ref|ZP_14579999.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071847|ref|ZP_14584490.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078448|ref|ZP_14590905.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082921|ref|ZP_14595211.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421913527|ref|ZP_16343208.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914666|ref|ZP_16344307.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424935574|ref|ZP_18353946.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|428150792|ref|ZP_18998551.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428942393|ref|ZP_19015390.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|364515843|gb|AEW58971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345328|gb|EJJ38453.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350360|gb|EJJ43449.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397362413|gb|EJJ55063.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363280|gb|EJJ55921.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397367621|gb|EJJ60231.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397375785|gb|EJJ68064.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381289|gb|EJJ73461.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387039|gb|EJJ79089.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397404598|gb|EJJ96099.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397412235|gb|EJK03474.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412369|gb|EJK03604.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421653|gb|EJK12659.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397428551|gb|EJK19288.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434293|gb|EJK24930.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439883|gb|EJK30310.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444790|gb|EJK35052.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451690|gb|EJK41770.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407809761|gb|EKF81012.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410112612|emb|CCM85833.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123082|emb|CCM86932.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426298762|gb|EKV61144.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|427539260|emb|CCM94689.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 332
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 141 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|170021953|ref|YP_001726907.1| tRNA-dihydrouridine synthase A [Escherichia coli ATCC 8739]
gi|251787304|ref|YP_003001608.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253775323|ref|YP_003038154.1| tRNA-dihydrouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254290735|ref|YP_003056483.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300929788|ref|ZP_07145240.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|312974158|ref|ZP_07788329.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|386707290|ref|YP_006171137.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|422767922|ref|ZP_16821647.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|422787897|ref|ZP_16840634.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|422793652|ref|ZP_16846347.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|425307883|ref|ZP_18697539.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|432487842|ref|ZP_19729744.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|432578320|ref|ZP_19814762.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|433175983|ref|ZP_20360478.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
gi|169756881|gb|ACA79580.1| TIM-barrel protein, yjbN family [Escherichia coli ATCC 8739]
gi|242379577|emb|CAQ34398.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253326367|gb|ACT30969.1| TIM-barrel protein, yjbN family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253980042|gb|ACT45712.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300462294|gb|EFK25787.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|310331692|gb|EFP98948.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|323935538|gb|EGB31869.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|323960455|gb|EGB56088.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|323969817|gb|EGB65098.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|383105458|gb|AFG42967.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|408224213|gb|EKI47936.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|431012815|gb|ELD26575.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|431110668|gb|ELE14586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|431685672|gb|ELJ51240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
Length = 345
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|422642133|ref|ZP_16705553.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae Cit 7]
gi|330954517|gb|EGH54777.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae Cit 7]
Length = 312
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/313 (46%), Positives = 209/313 (66%), Gaps = 11/313 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G ++
Sbjct: 2 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSKAAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 122 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 182 LKSDFPDLEIVLNGGIKTLEQCSEHLQSFDGVMLGREAYHNPYLLAHVDQQLFGSTA--P 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
+ +R D + M YI + + + N++ +TRHMLGL G+ +F+Q+LS +
Sbjct: 240 VISRYDALESMRPYIAEHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLSVDIHKAEN 297
Query: 294 NLLTIDNFQFFLN 306
+L +D FL
Sbjct: 298 PMLLLDQAAAFLQ 310
>gi|444353700|ref|YP_007389844.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
gi|443904530|emb|CCG32304.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
Length = 354
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 43 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 102
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 103 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAALVADCIKAMRDVVSIPVTVK 162
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 163 TRIGIDDRDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 222
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP ++++ D +
Sbjct: 223 LKRDFPHLTMAINGGIKSLAEAKQQLEHMDGVMVGREAYQNPGILASVDREIFGVDGADA 282
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + ITRHMLGL + I G+ ++++ LS+
Sbjct: 283 DP--VAVVRAMYPYIERELSNGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 331
>gi|398855032|ref|ZP_10611535.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM80]
gi|398232747|gb|EJN18701.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM80]
Length = 312
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHPIA Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPIALQLGGSVPLD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 122 KHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 182 LKADFPELEIVLNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--SAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 240 VISRAEALAQLRPYIAEHLQAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 289
>gi|424924029|ref|ZP_18347390.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens R124]
gi|404305189|gb|EJZ59151.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens R124]
Length = 331
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 201 LKADFPELEIVLNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--SAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAEHLQAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|398940390|ref|ZP_10669207.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM41(2012)]
gi|398162908|gb|EJM51086.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM41(2012)]
Length = 331
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAMCARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKTDFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|197263333|ref|ZP_03163407.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241588|gb|EDY24208.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 332
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|262045546|ref|ZP_06018567.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330004874|ref|ZP_08305056.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
gi|259037105|gb|EEW38355.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536493|gb|EGF62835.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
Length = 313
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 122 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E + L ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLDEARVQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|432367623|ref|ZP_19610732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|432528952|ref|ZP_19766017.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|432668481|ref|ZP_19904044.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
gi|430890145|gb|ELC12782.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|431058914|gb|ELD68291.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|431215501|gb|ELF13189.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
Length = 345
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|410632529|ref|ZP_11343187.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
gi|410147955|dbj|GAC20054.1| tRNA-dihydrouridine synthase A [Glaciecola arctica BSs20135]
Length = 337
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 202/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F R+I++++ LYTEM TT AI+ K L +N EEHP+A Q+G ++P +
Sbjct: 15 LDWTDKHCRYFLRKISQHALLYTEMVTTGAIIFGKGDYLAYNQEEHPVALQLGGSDPTDM 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A QK+GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI +M+ V+I +TVK
Sbjct: 75 ARCAGEAQKYGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAACISSMQAEVDIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++ Y+ + F+ V+++GC TFIVHAR A+LK L+PKQNR +P L Y+ VY L
Sbjct: 135 SRIGIDDMDEYEDLTRFIDVVAASGCDTFIVHARKAWLKGLSPKQNRDVPPLMYDRVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+ FP+L I +NGG+KT ++ LHLNY+DGVM+GRE Y NP++++ D +Y + I
Sbjct: 195 KQQFPDLHISLNGGVKTLDDVQLHLNYLDGVMIGREVYSNPYILAEVDNRFYQD--NAVI 252
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR +++ M+ Y+ QQ+ I RHMLGL + G +++ LS+
Sbjct: 253 KTRAEVVMSMLPYVEQQIALG--ARPWHIARHMLGLFQGQPGGRIWRRYLSQ 302
>gi|409201210|ref|ZP_11229413.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas flavipulchra JG1]
Length = 337
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AI+ K L F A E P+A Q+G ++PK L
Sbjct: 28 LDWTDRHCRTFHRKLTKHAVLYTEMITTGAIIFGKGDYLAFGAHELPVALQLGGSDPKAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK +++GY E+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V I +TVK
Sbjct: 88 AECAKRAEQYGYSEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKAEVNIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + + GC FI+HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 148 TRIGIDEQDSYEFLTALIEASQAVGCDDFIIHARKAWLQGLSPKENREIPPLDYPRVYQL 207
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L I INGG+KT +E HL ++DGVM+GREAY NPF++S D Y +
Sbjct: 208 KKDYPDLHISINGGVKTLEECQHHLAHLDGVMVGREAYSNPFMLSQVDELLYGEAAFTQ- 266
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR ++ M Y +++N N I RHMLG+ +N G+ F++ LS+
Sbjct: 267 -TRHQVVRSMYGYFESEMSNG--ANFWHIARHMLGIFQNQPGARGFRRHLSE 315
>gi|197247584|ref|YP_002149157.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|417515016|ref|ZP_12178665.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|440763290|ref|ZP_20942332.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766472|ref|ZP_20945462.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440771036|ref|ZP_20949961.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|197211287|gb|ACH48684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|353632051|gb|EHC79212.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|436420321|gb|ELP18186.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436422620|gb|ELP20452.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436422882|gb|ELP20705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
Length = 332
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|168263436|ref|ZP_02685409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|417369857|ref|ZP_12140887.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|205348025|gb|EDZ34656.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353583306|gb|EHC43699.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
Length = 332
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILASVDREIFGADTTDT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|429335178|ref|ZP_19215817.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
gi|428760137|gb|EKX82412.1| tRNA-dihydrouridine synthase A [Pseudomonas putida CSV86]
Length = 336
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDR CR F R ++R++ LYTEM TT A+L G+ L +A E+P+A Q+G + P
Sbjct: 26 MDWTDRRCRFFLRLLSRHALLYTEMVTTGALLHGDSARFLGHDAAEYPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GY+E+NLN GCPS+RVQN GA LM P LV+DC+KAM D+V+I +TV
Sbjct: 86 LAACAKLAEVAGYNEVNLNVGCPSDRVQNNMIGACLMGHPALVADCVKAMIDAVQIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEII+NGGIKT +E HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKKDFPDLEIILNGGIKTLEECHEHLKTFDGVMLGREAYHNPYLLAQVDQQLFGS--SAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI L ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 VITRAEALEQLKPYIAAHLAAG--GAMHHVTRHVLGLAQGFKGARRFRQLLS 313
>gi|437835925|ref|ZP_20845495.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435299608|gb|ELO75734.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 332
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEACGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|432878609|ref|ZP_20095891.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
gi|431416474|gb|ELG98960.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
Length = 345
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|16767493|ref|NP_463108.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991432|ref|ZP_02572531.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|374981747|ref|ZP_09723070.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378447562|ref|YP_005235194.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378453175|ref|YP_005240535.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378702086|ref|YP_005184044.1| hypothetical protein SL1344_4179 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378986919|ref|YP_005250075.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378991512|ref|YP_005254676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703483|ref|YP_005245211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498823|ref|YP_005399512.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422028484|ref|ZP_16374783.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033534|ref|ZP_16379602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427557379|ref|ZP_18930106.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427575211|ref|ZP_18934696.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427597005|ref|ZP_18939614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427621382|ref|ZP_18944496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427645326|ref|ZP_18949384.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658495|ref|ZP_18954104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663766|ref|ZP_18959011.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427681699|ref|ZP_18963902.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427801900|ref|ZP_18969388.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|38604955|sp|Q8ZKH4.1|DUSA_SALTY RecName: Full=tRNA-dihydrouridine synthase A
gi|16422801|gb|AAL23067.1| putative TIM-barrel enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205330107|gb|EDZ16871.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261249341|emb|CBG27204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996554|gb|ACY91439.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160735|emb|CBW20266.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915348|dbj|BAJ39322.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223111|gb|EFX48181.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323132582|gb|ADX20012.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332991059|gb|AEF10042.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380465644|gb|AFD61047.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414011328|gb|EKS95293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414012607|gb|EKS96521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414012831|gb|EKS96738.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414026899|gb|EKT10156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027440|gb|EKT10679.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030156|gb|EKT13291.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414040922|gb|EKT23520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414041624|gb|EKT24189.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046045|gb|EKT28398.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055052|gb|EKT36973.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414060828|gb|EKT42320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 332
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|91794580|ref|YP_564231.1| tRNA-dihydrouridine synthase A [Shewanella denitrificans OS217]
gi|91716582|gb|ABE56508.1| TIM-barrel protein, yjbN family [Shewanella denitrificans OS217]
Length = 327
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/298 (49%), Positives = 204/298 (68%), Gaps = 8/298 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+H R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 12 LDWTDKHYRYFARIMSTKALLYTEMVTTGAILHGRGDYLAYNTEEHPLALQLGGSNPVDL 71
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 72 AACAKLAFERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 131
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV++ GC F +HAR A+L+ L+PK+NR+IP+L Y+ VY L
Sbjct: 132 TRIGIDEQDSYEFLTKFIETVAAKGCDDFTIHARKAWLQGLSPKENREIPLLDYDRVYQL 191
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L I INGGIKT E LHL +DGVM+GREAY+NP+L++ D Y + I
Sbjct: 192 KRDFPKLNIGINGGIKTLAEAKLHLTQLDGVMVGREAYQNPYLLAEVDTQLYG--VKRDI 249
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS----KPN 294
+R +I +M+ YI L +N ITRHM+GL + + GS ++++ LS KPN
Sbjct: 250 ISREQVIEKMLPYIEAHLKTG--GRLNHITRHMIGLFQGLAGSRQWRRHLSENAHKPN 305
>gi|396384|gb|AAC43143.1| ORF_o345 [Escherichia coli str. K-12 substr. MG1655]
Length = 345
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM V+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAXXVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|56416043|ref|YP_153118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161617371|ref|YP_001591336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552533|ref|ZP_02346286.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|197364970|ref|YP_002144607.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|416423360|ref|ZP_11690749.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433040|ref|ZP_11696566.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416442269|ref|ZP_11702356.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447349|ref|ZP_11705794.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416455473|ref|ZP_11711098.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416457699|ref|ZP_11712301.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416482962|ref|ZP_11723950.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416494314|ref|ZP_11728126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416499548|ref|ZP_11730859.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416506579|ref|ZP_11734797.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416543311|ref|ZP_11752093.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416559764|ref|ZP_11760856.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568949|ref|ZP_11765137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416580782|ref|ZP_11772173.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416587601|ref|ZP_11776137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416592012|ref|ZP_11778833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599971|ref|ZP_11783918.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416607446|ref|ZP_11788517.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615753|ref|ZP_11793665.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618197|ref|ZP_11794478.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416633858|ref|ZP_11802199.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416644324|ref|ZP_11806707.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416646520|ref|ZP_11807786.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416656140|ref|ZP_11813116.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416669559|ref|ZP_11819525.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416676793|ref|ZP_11822022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416693218|ref|ZP_11826628.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416708650|ref|ZP_11833512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416709933|ref|ZP_11834038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720356|ref|ZP_11842070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726058|ref|ZP_11846119.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416731500|ref|ZP_11849415.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416735649|ref|ZP_11851533.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745080|ref|ZP_11857038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759652|ref|ZP_11864479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763974|ref|ZP_11867648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770480|ref|ZP_11871832.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417377338|ref|ZP_12146282.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|418482816|ref|ZP_13051829.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418486738|ref|ZP_13055684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496396|ref|ZP_13062830.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501035|ref|ZP_13067426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503593|ref|ZP_13069952.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508252|ref|ZP_13074555.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418523688|ref|ZP_13089676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|56130300|gb|AAV79806.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161366735|gb|ABX70503.1| hypothetical protein SPAB_05226 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197096447|emb|CAR62053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205322837|gb|EDZ10676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|322615399|gb|EFY12319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618459|gb|EFY15348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622129|gb|EFY18979.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627200|gb|EFY23992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631160|gb|EFY27924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637622|gb|EFY34323.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643604|gb|EFY40159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648339|gb|EFY44798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654648|gb|EFY50968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659608|gb|EFY55851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662183|gb|EFY58399.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666071|gb|EFY62249.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672491|gb|EFY68602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675920|gb|EFY71991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680405|gb|EFY76443.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684701|gb|EFY80705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195965|gb|EFZ81131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197105|gb|EFZ82246.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201777|gb|EFZ86841.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323213302|gb|EFZ98104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215672|gb|EGA00416.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222095|gb|EGA06481.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226506|gb|EGA10712.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229131|gb|EGA13260.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236259|gb|EGA20335.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237621|gb|EGA21682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241713|gb|EGA25742.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248140|gb|EGA32077.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254530|gb|EGA38341.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258410|gb|EGA42087.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259690|gb|EGA43324.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265963|gb|EGA49459.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270405|gb|EGA53853.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353590260|gb|EHC48829.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|363555177|gb|EHL39409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363575485|gb|EHL59336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363576956|gb|EHL60782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366056826|gb|EHN21131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062698|gb|EHN26927.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366067567|gb|EHN31717.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366071921|gb|EHN36013.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366072663|gb|EHN36751.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366079507|gb|EHN43489.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366831210|gb|EHN58076.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372208000|gb|EHP21496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 332
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|238918205|ref|YP_002931719.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
gi|238867773|gb|ACR67484.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
Length = 349
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L + EEHP+A Q+G + P L
Sbjct: 37 LDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYCEEEHPLALQLGGSNPADL 96
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A++ + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 97 ARCARLAETRGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 156
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+GTV+ G C TFIVHAR A+L L+P++NR++P L Y VY
Sbjct: 157 TRIGIDEQDSYPFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPRENREVPPLDYPRVYR 216
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG+K E HL ++DGVM+GREAY NP +++ D +
Sbjct: 217 LKQDFPHLTIALNGGVKRLDEARAHLQHVDGVMVGREAYHNPGILAQVDSQLFDA--DAA 274
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P + ++ + YI ++L + ITRH+LGL + I G+ ++++ LS+
Sbjct: 275 VPDSVAVVRALYPYIGRELAQGTY--LGHITRHILGLFQGIPGARQWRRHLSE 325
>gi|260767137|ref|ZP_05876081.1| tRNA-dihydrouridine synthase [Vibrio furnissii CIP 102972]
gi|260617858|gb|EEX43033.1| tRNA-dihydrouridine synthase [Vibrio furnissii CIP 102972]
Length = 316
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 198/294 (67%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPVDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM+ V+I +TVK
Sbjct: 62 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKAVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTHFVTVVSEQGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LK+DFP+L I +NGG+K+ E HL ++DGVM+GREAY++P+L++ D + + P
Sbjct: 182 LKQDFPQLTIAVNGGVKSLAEAKEHLQHLDGVMIGREAYQSPYLLAEVDQQIFGLDTP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QQL + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 240 -VKKRSQVVQEMYPYIEQQLAQGSY--LGHITRHMLGLFQNMPGARQWRRHISE 290
>gi|219871369|ref|YP_002475744.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
gi|219691573|gb|ACL32796.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis SH0165]
Length = 323
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 204/292 (69%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ T++S LY+EM T AIL K L ++ E+P+A Q+G ++P++L
Sbjct: 16 LDWTTRHCRYFHRQFTQHSLLYSEMITAPAILHAKYDLLAYDPTENPVALQLGGSDPEQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+ C++AM+ V I +TVK
Sbjct: 76 AKCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVARCVEAMKKEVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ + C FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKIQPY-CNDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L++ INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + P +I
Sbjct: 195 KRDFPHLKMSINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLGYIDRELFD--PNAEI 252
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + +M+ YI QQL+ +N I RH+LG +N KG+ ++++ LS+
Sbjct: 253 VTPKQAVEKMLPYIEQQLSQGVY--LNHIVRHILGAFQNCKGARQWRRHLSE 302
>gi|431927810|ref|YP_007240844.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas stutzeri RCH2]
gi|431826097|gb|AGA87214.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas stutzeri RCH2]
Length = 334
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 201/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+ + L + EHP+A Q+G + P +
Sbjct: 24 MDWTDRHCRYFLRQLSRHALLYTEMVTTGALLHGDAQRFLRHDESEHPLALQLGGSVPAE 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +++TV
Sbjct: 84 LAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVGVEVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P L+Y+
Sbjct: 144 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKQNREVPPLRYDIAAQ 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 204 LKQDFPDLEIILNGGIKTLDECRAHLQTFDGVMLGREAYHNPYLLARVDHELFGSDTP-- 261
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ R + M YI Q L ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 262 -VIGRAQALRNMRPYIEQHLAEGGA--MHHITRHVLGLGQGFPGARRFRQLLS 311
>gi|416530644|ref|ZP_11745107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534891|ref|ZP_11747379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416550057|ref|ZP_11755735.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|417471394|ref|ZP_12167386.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|418790328|ref|ZP_13346105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794887|ref|ZP_13350602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418796080|ref|ZP_13351772.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|353622983|gb|EHC72385.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|363550270|gb|EHL34598.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363566997|gb|EHL51010.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363569120|gb|EHL53084.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|392758711|gb|EJA15577.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392760313|gb|EJA17151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392770949|gb|EJA27670.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
Length = 332
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|200388599|ref|ZP_03215211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605697|gb|EDZ04242.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 332
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|422016920|ref|ZP_16363496.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
gi|414091350|gb|EKT53036.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
Length = 342
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L F+ EE P+A Q+G ++P L
Sbjct: 31 LDWTDRHCRYFHRVLSKNTLLYTEMVTTGAIIYGKGDYLAFSEEEQPVALQLGGSDPAAL 90
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GY+EINLN GCPS+RVQNG FGA LM LV+DCIKAM+D V I +TVK
Sbjct: 91 AQCAKLAEARGYNEINLNVGCPSDRVQNGRFGACLMGDAQLVADCIKAMQDVVSIPVTVK 150
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ VS+ GC FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 151 TRIGIDEQDSYEFLCDFIDKVSTQGGCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+KT +E HL Y+DGVM+GREAY+NP +++ D + + Q
Sbjct: 211 LKRDFPHLTMAINGGVKTLEEAKEHLRYLDGVMVGREAYQNPSILAEVDNQLFDS--QSS 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ D + +M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 269 VVNTFDAVRQMFPYIEKELSQGAY--LGHITRHMLGIFQGIPGARQWRRYLSE 319
>gi|204927346|ref|ZP_03218548.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452122023|ref|YP_007472271.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204324011|gb|EDZ09206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451911027|gb|AGF82833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 332
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|262275131|ref|ZP_06052942.1| tRNA dihydrouridine synthase A [Grimontia hollisae CIP 101886]
gi|262221694|gb|EEY73008.1| tRNA dihydrouridine synthase A [Grimontia hollisae CIP 101886]
Length = 315
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L FN EEHP+A Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRILSKNALLYTEMVTTGAIIHGKGDFLAFNEEEHPVALQLGGSNPADL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ AM++ V+I +TVK
Sbjct: 62 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMGEAELVAQCVAAMKEVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV TVS GC F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLVDFVRTVSEKGGCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP L + INGGIK+ +E + HL ++DGVM+GREAY++P+L++ D + S+ P
Sbjct: 182 LKKDFPHLTMAINGGIKSLEEAEAHLKFMDGVMIGREAYQSPYLLAEVDSRLFGSDAPII 241
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
K R + + + YI +L +K +N I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 242 K---RSEAVRAIFPYIEAEL--SKGTYLNHISRHMLGLFQNMPGARQWRRYISE 290
>gi|22124488|ref|NP_667911.1| tRNA-dihydrouridine synthase A [Yersinia pestis KIM10+]
gi|45440326|ref|NP_991865.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Microtus
str. 91001]
gi|108809958|ref|YP_653874.1| tRNA-dihydrouridine synthase A [Yersinia pestis Antiqua]
gi|108813513|ref|YP_649280.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|145600902|ref|YP_001164978.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides F]
gi|150260637|ref|ZP_01917365.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162420841|ref|YP_001605835.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165926732|ref|ZP_02222564.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936521|ref|ZP_02225089.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|166010496|ref|ZP_02231394.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213918|ref|ZP_02239953.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402469|ref|ZP_02307926.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418732|ref|ZP_02310485.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426194|ref|ZP_02317947.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167467147|ref|ZP_02331851.1| tRNA-dihydrouridine synthase A [Yersinia pestis FV-1]
gi|218927522|ref|YP_002345397.1| tRNA-dihydrouridine synthase A [Yersinia pestis CO92]
gi|229836573|ref|ZP_04456739.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|229840181|ref|ZP_04460340.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842263|ref|ZP_04462418.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903999|ref|ZP_04519112.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|270489016|ref|ZP_06206090.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294502383|ref|YP_003566445.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|384120870|ref|YP_005503490.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|384124748|ref|YP_005507362.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|384137704|ref|YP_005520406.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|384413316|ref|YP_005622678.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544763|ref|ZP_15042958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|420550067|ref|ZP_15047702.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|420555518|ref|ZP_15052553.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|420561163|ref|ZP_15057465.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|420566204|ref|ZP_15062011.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|420571833|ref|ZP_15067127.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|420577178|ref|ZP_15071958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|420582517|ref|ZP_15076821.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|420587659|ref|ZP_15081464.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|420592968|ref|ZP_15086241.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|420598657|ref|ZP_15091342.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|420604186|ref|ZP_15096265.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|420609527|ref|ZP_15101117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|420614776|ref|ZP_15105797.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|420620227|ref|ZP_15110548.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|420625278|ref|ZP_15115125.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|420630435|ref|ZP_15119808.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|420635564|ref|ZP_15124394.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|420641163|ref|ZP_15129439.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|420646323|ref|ZP_15134173.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|420651967|ref|ZP_15139232.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|420657414|ref|ZP_15144148.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|420662754|ref|ZP_15148912.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|420667746|ref|ZP_15153426.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|420673050|ref|ZP_15158250.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|420678549|ref|ZP_15163255.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|420683778|ref|ZP_15167956.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|420688949|ref|ZP_15172551.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|420694760|ref|ZP_15177632.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|420700014|ref|ZP_15182229.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|420706178|ref|ZP_15187107.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|420711464|ref|ZP_15191904.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|420716826|ref|ZP_15196660.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|420722477|ref|ZP_15201468.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|420728124|ref|ZP_15206486.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|420733219|ref|ZP_15211075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|420738685|ref|ZP_15216012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|420743925|ref|ZP_15220705.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|420749802|ref|ZP_15225638.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|420754870|ref|ZP_15230177.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|420760975|ref|ZP_15235026.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|420766146|ref|ZP_15239708.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|420771193|ref|ZP_15244223.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|420776529|ref|ZP_15249041.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|420781987|ref|ZP_15253829.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|420787436|ref|ZP_15258603.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|420792880|ref|ZP_15263509.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|420798052|ref|ZP_15268152.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|420803401|ref|ZP_15272969.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|420808579|ref|ZP_15277657.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|420814376|ref|ZP_15282843.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|420819503|ref|ZP_15287498.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|420824592|ref|ZP_15292045.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|420830402|ref|ZP_15297293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|420835232|ref|ZP_15301644.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|420840359|ref|ZP_15306289.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|420845966|ref|ZP_15311368.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|420851300|ref|ZP_15316133.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|420856895|ref|ZP_15320840.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|421761744|ref|ZP_16198544.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
gi|38604954|sp|Q8ZJ14.1|DUSA_YERPE RecName: Full=tRNA-dihydrouridine synthase A
gi|21957280|gb|AAM84162.1|AE013659_6 hypothetical protein y0574 [Yersinia pestis KIM10+]
gi|45435182|gb|AAS60742.1| Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Yersinia pestis biovar Microtus str. 91001]
gi|108777161|gb|ABG19680.1| hypothetical protein YPN_3353 [Yersinia pestis Nepal516]
gi|108781871|gb|ABG15929.1| hypothetical protein YPA_3968 [Yersinia pestis Antiqua]
gi|115346133|emb|CAL19001.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212598|gb|ABP42005.1| hypothetical protein YPDSF_3655 [Yersinia pestis Pestoides F]
gi|149290045|gb|EDM40122.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162353656|gb|ABX87604.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165915637|gb|EDR34246.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921355|gb|EDR38579.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990586|gb|EDR42887.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204893|gb|EDR49373.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962726|gb|EDR58747.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048157|gb|EDR59565.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054905|gb|EDR64707.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229679769|gb|EEO75872.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|229690573|gb|EEO82627.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696547|gb|EEO86594.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706257|gb|EEO92265.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|262360466|gb|ACY57187.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|262364412|gb|ACY60969.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|270337520|gb|EFA48297.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294352842|gb|ADE63183.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|320013820|gb|ADV97391.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852833|gb|AEL71386.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|391432821|gb|EIQ94225.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|391433794|gb|EIQ95074.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|391436489|gb|EIQ97440.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|391448818|gb|EIR08596.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|391449521|gb|EIR09240.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|391451830|gb|EIR11293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|391464830|gb|EIR23075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|391466407|gb|EIR24480.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|391468483|gb|EIR26354.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|391482090|gb|EIR38566.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|391482864|gb|EIR39279.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|391483187|gb|EIR39575.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|391497049|gb|EIR51943.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|391497975|gb|EIR52787.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|391501490|gb|EIR55892.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|391512760|gb|EIR66051.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|391514298|gb|EIR67417.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|391516099|gb|EIR69025.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|391528314|gb|EIR80144.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|391531127|gb|EIR82643.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|391532381|gb|EIR83778.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|391545340|gb|EIR95443.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|391547026|gb|EIR96962.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|391547813|gb|EIR97671.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|391561446|gb|EIS09971.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|391562618|gb|EIS11012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|391564746|gb|EIS12922.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|391576828|gb|EIS23328.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|391577637|gb|EIS24031.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|391588895|gb|EIS33856.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|391592175|gb|EIS36646.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|391592909|gb|EIS37280.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|391605850|gb|EIS48668.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|391607726|gb|EIS50292.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|391608296|gb|EIS50802.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|391620412|gb|EIS61571.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|391621267|gb|EIS62329.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|391629763|gb|EIS69645.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|391631857|gb|EIS71442.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|391643090|gb|EIS81290.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|391645886|gb|EIS83713.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|391649002|gb|EIS86453.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|391655599|gb|EIS92321.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|391662436|gb|EIS98366.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|391667553|gb|EIT02874.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|391669189|gb|EIT04347.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|391672966|gb|EIT07731.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|391686879|gb|EIT20254.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|391688326|gb|EIT21552.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|391689662|gb|EIT22768.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|391701023|gb|EIT33065.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|391704128|gb|EIT35810.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|391704880|gb|EIT36495.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|391715593|gb|EIT46117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|391720457|gb|EIT50478.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|391721025|gb|EIT51002.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|391731554|gb|EIT60242.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|391734126|gb|EIT62419.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|391737417|gb|EIT65304.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|411178066|gb|EKS48078.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
Length = 345
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQVDRELFD--PNAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALYPYIEQELSQGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|422024011|ref|ZP_16370512.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
gi|414091411|gb|EKT53096.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
Length = 342
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L F+ EE P+A Q+G ++P L
Sbjct: 31 LDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIYGKGDYLAFSEEEQPVALQLGGSDPAAL 90
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAM+D V I +TVK
Sbjct: 91 AQCAKLGEERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCIKAMKDVVSIPVTVK 150
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ +F+ TV++ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 151 TRIGIDEQDSYEFLCEFIDTVATKGNCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+KT +E HL ++DGVM+GREAY+NP +++ D + Q
Sbjct: 211 LKRDFPHLTMAINGGVKTLEEAKEHLRHLDGVMVGREAYQNPSILTAVDNQLFDE--QLP 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +D + +M YI ++L+ + +TRHMLG+ + I G+ ++++ LS+
Sbjct: 269 VVNAVDAVRQMYPYIEKELSQGAY--LGHMTRHMLGIFQGIPGARQWRRYLSE 319
>gi|377579682|ref|ZP_09808646.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377538999|dbj|GAB53811.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 332
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 21 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYEFLCEFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGI + ++ HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGITSLEQAKAHLEHMDGVMVGREAYQNPGMLAAVDREIFGV--AGA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 259 SPDPVSVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGVPGARQWRRYLSE 309
>gi|417387391|ref|ZP_12151838.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353600498|gb|EHC56371.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
Length = 332
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|238892522|ref|YP_002917256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238544838|dbj|BAH61189.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 331
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 20 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 140 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP ++++ D +
Sbjct: 200 LKRDFPHLTMAINGGIKSLDEARAQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 308
>gi|152978183|ref|YP_001343812.1| tRNA-dihydrouridine synthase A [Actinobacillus succinogenes 130Z]
gi|150839906|gb|ABR73877.1| TIM-barrel protein, yjbN family [Actinobacillus succinogenes 130Z]
Length = 326
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 201/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ L F+ E+P+A Q+G ++P +L
Sbjct: 18 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIVHAGYDHLAFDTAENPVALQLGGSDPVQL 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C+ M+ +V I +TVK
Sbjct: 78 AHCAKLAEERGYREINLNVGCPSDRVQNGMFGACLMAKADLVAECVTKMQAAVSIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DFV +++AGC+ IVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 138 TRIGIDELDSYEFLYDFVHKITNAGCQELIVHARKAWLSGLSPKENREIPPLDYERVYQL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP + I INGGIKT +E+ HL +DGVM+GREAY+NP L+ D + P +I
Sbjct: 198 KRDFPHILISINGGIKTIEEMTAHLQQVDGVMVGREAYQNPSLLGYIDQALFD--PTARI 255
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M YI QQLN +N I RH+LG + KG+ ++++ LS+
Sbjct: 256 VTAREAVENMFPYIEQQLNRGVY--LNHIVRHILGAFQGCKGARQWRRYLSE 305
>gi|170718234|ref|YP_001785255.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 2336]
gi|168826363|gb|ACA31734.1| TIM-barrel protein, yjbN family [Haemophilus somnus 2336]
Length = 328
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +RY+ LYTEM TT AI+ K L ++ E+P+A Q+G ++P+KL
Sbjct: 19 LDWTTRHCRFFHRQFSRYTLLYTEMVTTGAIIHAKYDHLAYDVSENPVALQLGGSDPEKL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK ++ GY EINLN GCPS+RVQNG FGA LM + LV++C+ AM+ +V I +TVK
Sbjct: 79 QYCAKKGEERGYQEINLNVGCPSDRVQNGMFGACLMARAALVAECVNAMQSAVNIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
R+GID+ +SY+F+ DF+ V + GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRLGIDEFDSYEFLCDFIEKVHNIGCQEFIIHARKAWLSGLSPKENREIPPLNYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP L I INGGIKT +EI HLNY+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KKDFPHLLISINGGIKTLEEIQQHLNYVDGVMVGREAYQNPSLLGYIDQALFD--PSCAI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T I M YI QQL+ +N I RH+LG + KG+ ++++ +S+
Sbjct: 257 ITPRQAIENMFPYIEQQLSQGVY--LNHIARHLLGAFQQCKGARQWRRYMSE 306
>gi|410611553|ref|ZP_11322651.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
gi|410168971|dbj|GAC36540.1| tRNA-dihydrouridine synthase A [Glaciecola psychrophila 170]
Length = 338
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 205/310 (66%), Gaps = 4/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F RQI++++ LYTEM TT AI+ K L FN EEHP+A Q+G + P +
Sbjct: 16 LDWTDKHCRYFLRQISQHALLYTEMVTTGAIIFGKGDYLGFNQEEHPVALQLGGSNPTDM 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A QK+GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI M+ V+I +TVK
Sbjct: 76 ARCASEAQKYGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAACINTMQAEVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++ Y+ + F+ V+++GC TFIVHAR A+LK L+PKQNR +P L Y+ VY L
Sbjct: 136 SRIGIDDMDEYEDLTRFIEVVAASGCNTFIVHARKAWLKGLSPKQNRDVPPLMYDRVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+ FPEL I +NGG+KT + LHLN++DGVM+GRE Y NP++++ D +Y + K
Sbjct: 196 KQQFPELHISLNGGVKTLDDAQLHLNHLDGVMIGREVYSNPYILAEVDKRFYQDHSVSK- 254
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
TR +++ M+ Y+ QQ+ +I RHMLGL + G +++ LS+
Sbjct: 255 -TRPEVVLAMLPYVEQQIALG--ARPWNIARHMLGLFQGQAGGRIWRRYLSQNGTKAGVG 311
Query: 301 FQFFLNTLNI 310
+ + L++
Sbjct: 312 VELLTDALDV 321
>gi|304415193|ref|ZP_07395906.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
gi|304282951|gb|EFL91401.1| tRNA-dihydrouridine synthase A [Candidatus Regiella insecticola
LSR1]
Length = 344
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LY+EM TT AI+ K L ++ ++HP+ Q+G ++PK L
Sbjct: 35 LDWTDRHCRYFHRLLTKQTLLYSEMVTTGAIIHGKADYLAYSEQDHPVVLQLGGSDPKIL 94
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAM D V I +TVK
Sbjct: 95 ADCAKLGQQRGYNEINLNIGCPSDRVQNGRFGACLMGEADLVADCIKAMNDGVSIPVTVK 154
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID +SY+F+ DFV T+++ GC FI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 155 TRIGIDSHDSYEFLCDFVDTIANKGGCHIFIIHARKAWLSGLSPKENREVPPLNYPRVYQ 214
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I+INGGI T ++ HL Y+DGVM+GREAY+NP +++ D + PQ
Sbjct: 215 LKRDFPQLTIVINGGITTLEDAADHLKYVDGVMIGREAYQNPAILAEVDRKLFD--PQAA 272
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I ++ +I + YI Q+L+ + ITRH+LGL + G+ ++++ LS+
Sbjct: 273 ITDKVAVIKALYPYIEQELSRG--ARLGHITRHILGLFQGTPGARQWRRYLSE 323
>gi|168243640|ref|ZP_02668572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194448858|ref|YP_002048234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|386589569|ref|YP_006085969.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417354256|ref|ZP_12130739.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417362043|ref|ZP_12135791.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417491911|ref|ZP_12173108.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417535457|ref|ZP_12188924.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|418514870|ref|ZP_13081064.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|419731159|ref|ZP_14258083.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419736639|ref|ZP_14263468.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737299|ref|ZP_14264111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742757|ref|ZP_14269428.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748402|ref|ZP_14274899.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421572491|ref|ZP_16018140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574344|ref|ZP_16019967.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421580873|ref|ZP_16026426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582440|ref|ZP_16027977.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|194407162|gb|ACF67381.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337347|gb|EDZ24111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|353562279|gb|EHC28970.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353582408|gb|EHC43063.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353630230|gb|EHC77842.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353656757|gb|EHC97411.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|366077677|gb|EHN41687.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|381290979|gb|EIC32234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381292289|gb|EIC33493.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381306014|gb|EIC46912.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381313400|gb|EIC54185.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381314392|gb|EIC55162.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383796613|gb|AFH43695.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402517037|gb|EJW24442.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402518914|gb|EJW26281.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402525196|gb|EJW32488.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402533108|gb|EJW40292.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 332
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|16762924|ref|NP_458541.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144411|ref|NP_807753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213051927|ref|ZP_03344805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424511|ref|ZP_03357308.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582871|ref|ZP_03364697.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213614451|ref|ZP_03371277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647516|ref|ZP_03377569.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824651|ref|ZP_06544178.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378962333|ref|YP_005219819.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|38604946|sp|Q8Z1T1.1|DUSA_SALTI RecName: Full=tRNA-dihydrouridine synthase A
gi|25329941|pir||AB1016 conserved hypothetical protein STY4439 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505231|emb|CAD09227.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140049|gb|AAO71613.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374356205|gb|AEZ47966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 332
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|289679765|ref|ZP_06500655.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
FF5]
Length = 339
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDESEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|440746561|ref|ZP_20925841.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP39023]
gi|440370821|gb|ELQ07686.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP39023]
Length = 312
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/313 (46%), Positives = 208/313 (66%), Gaps = 11/313 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 2 MDWTDHHCRYFMRKLSKHAVLYTEMVTTGALLHGDRERFLRHDESEHPLALQLGGSTAAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 122 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 182 LKSDFPDLEIVLNGGIKTLEQCSEHLQSFDGVMLGREAYHNPYLLAHVDQQLFGSTA--P 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
+ +R D + M YI + + + N++ +TRHMLGL G+ +F+Q+LS +
Sbjct: 240 VISRYDALESMRPYIAEHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLSVDIHKAEN 297
Query: 294 NLLTIDNFQFFLN 306
+L +D FL
Sbjct: 298 PMLLLDQAAAFLQ 310
>gi|238754677|ref|ZP_04616030.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
gi|238707136|gb|EEP99500.1| tRNA-dihydrouridine synthase A [Yersinia ruckeri ATCC 29473]
Length = 343
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKEALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +FV V+ GC F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCEFVQKVAEQGGCDMFTIHARKAWLSGLSPKENREVPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGG+KT +E HL Y+DGVM+GREAY+NP +++ D + PQ
Sbjct: 208 LKRDFPALTMAINGGVKTLEEAKEHLKYLDGVMMGREAYQNPSILTQVDRELFD--PQAV 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VTDSVAAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRYLSE 316
>gi|365143210|ref|ZP_09348141.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
gi|363649755|gb|EHL88857.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
Length = 313
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRYFLRLLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DCIKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAPLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y V+
Sbjct: 122 TRIGIDDQDSYEFLCDFIETVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVWQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E L ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMAINGGIKSLDEARAQLEHMDGVMVGREAYQNPGILASVDREIFGVAGADA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L +K + ITRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIEREL--SKGTYLGHITRHMLGLFQGIPGARQWRRYLSE 290
>gi|420260218|ref|ZP_14762904.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512349|gb|EKA26198.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 316
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 62 AHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEARLVADCIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 122 TRIGIDELDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENREVPPLDYARVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL Y+DGVM+GREAY+NP +++ D + P
Sbjct: 182 LKRDFPTLTIAINGGVKTLAEAKEHLKYVDGVMMGREAYQNPTILTQVDRELFD--PNAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 240 VVDSVKAIEALFPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 290
>gi|343518517|ref|ZP_08755507.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
gi|343393432|gb|EGV05987.1| tRNA dihydrouridine synthase A [Haemophilus pittmaniae HK 85]
Length = 328
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 196/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ TR++ LYTEM T AI+ L F+ E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFTRHALLYTEMVTAPAIIHATYDHLAFDCAENPVALQLGGSDPQQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ GY EINLN GCPS+RVQNG FGA LM K LV C++AM+ V+I +TVK
Sbjct: 79 AHCAKLAATRGYQEINLNVGCPSDRVQNGMFGACLMAKADLVGACVQAMQAEVDIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ + AGCR FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLTDFIARIQQAGCREFIVHARKAWLSGLSPKENREIPPLDYARVYRL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K DFPEL+I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KADFPELKIAINGGIKTLEEMQTHLQFVDGVMVGREAYQNPSLLGGVDRALFD--PNAPL 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + M Y+ QL+ +N + R MLG + +KG+ ++++ LS+
Sbjct: 257 ISARQAVTAMFPYLEAQLSQGVY--LNHLIRPMLGAFQQVKGARQWRRYLSE 306
>gi|322515077|ref|ZP_08068085.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
gi|322118957|gb|EFX91134.1| tRNA dihydrouridine synthase A [Actinobacillus ureae ATCC 25976]
Length = 323
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 203/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMAKANLVADCIKAMQDTVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DFP L I INGGIKT EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTVDEIKQHLVFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIEAQ--TQKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|325282314|ref|YP_004254855.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
gi|324314123|gb|ADY25238.1| TIM-barrel protein, yjbN family [Deinococcus proteolyticus MRP]
Length = 346
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +T + LYTEM TT A+L G++ LDF A EHP+A Q+G ++P
Sbjct: 30 LDWTDRHCRAFHRCLTSRALLYTEMVTTGAVLHGDRARHLDFGAAEHPLALQLGGSDPAA 89
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A + + WGYDE+NLNCGCPS+RVQ+G FGA LM P +V+ C+ AM+++ + +TV
Sbjct: 90 LAECAALAEHWGYDEVNLNCGCPSDRVQSGAFGACLMATPDVVAACVAAMQEATRLPVTV 149
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD Y +R FV TV+ AGCRTFIVHAR A+LK L+PK+NR+IP L+Y V
Sbjct: 150 KHRIGIDDQEDYMDLRRFVETVAGAGCRTFIVHARKAWLKGLSPKENREIPPLRYELVEQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FPEL I +NGG++T + HL + DGVM+GR AY+ P+L++ D + +
Sbjct: 210 LKAEFPELTISLNGGVQTLAQAQEHLTWADGVMVGRAAYQTPYLLARVDQDIFGE--DAS 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR +++ R Y+ Q L ++ + +T+ LGL G+ +K+ LS+
Sbjct: 268 PPTRREVLARFRPYVVQGLAEG--QSFHHLTKSTLGLFAGQHGARHYKRTLSE 318
>gi|193067849|ref|ZP_03048815.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
gi|192958824|gb|EDV89261.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
Length = 339
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+ Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVVLQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNTQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|424071655|ref|ZP_17809078.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407998743|gb|EKG39144.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 339
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|422832678|ref|ZP_16880747.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|432414540|ref|ZP_19657183.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|432634945|ref|ZP_19870839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
gi|371614827|gb|EHO03310.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|430946293|gb|ELC66236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|431175589|gb|ELE75591.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
Length = 345
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|291615814|ref|YP_003518556.1| DusA [Pantoea ananatis LMG 20103]
gi|386081194|ref|YP_005994719.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis PA13]
gi|291150844|gb|ADD75428.1| DusA [Pantoea ananatis LMG 20103]
gi|354990375|gb|AER34499.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis PA13]
Length = 331
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ +EHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGDYLAYSEQEHPVALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V+I +TVK
Sbjct: 76 AQCAALAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADGIKAMRDVVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I INGG+KT +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 196 LKRDFPQLTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGRDRPAV 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--VAVVRAMYPYIEAEL--SKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 304
>gi|212710291|ref|ZP_03318419.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|422020548|ref|ZP_16367086.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
gi|212687098|gb|EEB46626.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|414101185|gb|EKT62786.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
Length = 341
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 205/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ EEHP++ Q+G ++P L
Sbjct: 30 LDWTDRHCRYFHRLLTKNTLLYTEMVTTGAIIYGKGDYLAYSEEEHPVSLQLGGSDPVAL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ ++ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 90 AQCAKLAEERGYDEINLNVGCPSDRVQNGRFGACLMADAQLVADCVKAMRDVVSIPVTVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ +F+ TVS+ G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 150 TRIGIDEQDSYEFLCEFIDTVSTKGDCEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 209
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L + INGGIKT +E HL Y+DGVM+GREAY+NP +++ D + N+P
Sbjct: 210 LKRDFPHLTMAINGGIKTLEEAKEHLKYLDGVMVGREAYQNPSILTAVDNQLFDENMP-- 267
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I + + M YI +L +K + +TRHMLG+ + I G+ ++++ LS+
Sbjct: 268 -IVDSVAAVRSMYPYIENEL--SKGAYLGHMTRHMLGIFQGIPGARQWRRHLSE 318
>gi|398999893|ref|ZP_10702626.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM18]
gi|398130947|gb|EJM20276.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM18]
Length = 339
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 29 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 149 KHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 209 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 267 VISRAEALAQLRPYIAEHLLAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 316
>gi|194446261|ref|YP_002043494.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|418807868|ref|ZP_13363425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811602|ref|ZP_13367127.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418816205|ref|ZP_13371698.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418822438|ref|ZP_13377851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828487|ref|ZP_13383521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832566|ref|ZP_13387503.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418833855|ref|ZP_13388766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841232|ref|ZP_13396051.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418848468|ref|ZP_13403206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854520|ref|ZP_13409188.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|194404924|gb|ACF65146.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|392777697|gb|EJA34379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778169|gb|EJA34849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392788113|gb|EJA44651.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392790426|gb|EJA46924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392790521|gb|EJA47016.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392797196|gb|EJA53514.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392805763|gb|EJA61878.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392808561|gb|EJA64609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392822768|gb|EJA78572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824375|gb|EJA80161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
Length = 332
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|452749014|ref|ZP_21948786.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri NF13]
gi|452007102|gb|EMD99362.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri NF13]
Length = 312
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 201/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRYFLRQLSKHALLYTEMVTTGALLHGDAARFLRYDESEHPLALQLGGSVPGD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V+I++TV
Sbjct: 62 LAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPSLVADCVKAMRDAVDIEVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V GCR+F VHAR A L+ L+PKQNR++P L+Y+
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVRDVGCRSFTVHARIAILEGLSPKQNREVPPLRYDVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEII+NGGIKT E HL DGVMLGREAY NP+L++ D + + +
Sbjct: 182 LKKDFPDLEIILNGGIKTLDECRAHLQTFDGVMLGREAYHNPYLLARVDQELFGS--EAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + L+ ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 240 VVSRAQALRNMRPYIERHLSEGGA--MHHITRHVLGLGQGFPGARRFRQLLS 289
>gi|312959660|ref|ZP_07774177.1| dihydrouridine synthase TIM-barrel protein YjbN [Pseudomonas
fluorescens WH6]
gi|311286377|gb|EFQ64941.1| dihydrouridine synthase TIM-barrel protein YjbN [Pseudomonas
fluorescens WH6]
Length = 328
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ L N EHP+A Q+G + P
Sbjct: 18 MDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAEHPLALQLGGSVPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 138 KHRIGINGRDSYAELCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + + +
Sbjct: 198 LKRDFPELEIVLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQRLFGS--EAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ R ++ ++ YI + L + + ++ ITRH+LGL G+ +F+Q+LS
Sbjct: 256 VVGRAQVLAQLRPYIAEHLASGGV--MHHITRHVLGLGTGFPGARRFRQLLS 305
>gi|424066941|ref|ZP_17804402.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408001869|gb|EKG42148.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 339
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|198244614|ref|YP_002218138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|207859397|ref|YP_002246048.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375121668|ref|ZP_09766835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|378957799|ref|YP_005215286.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|418847343|ref|ZP_13402104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418859768|ref|ZP_13414359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418864917|ref|ZP_13419433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|421359864|ref|ZP_15810151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362308|ref|ZP_15812563.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366288|ref|ZP_15816492.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421373220|ref|ZP_15823361.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377635|ref|ZP_15827730.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421380350|ref|ZP_15830413.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385699|ref|ZP_15835720.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389299|ref|ZP_15839283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421393839|ref|ZP_15843782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400104|ref|ZP_15849995.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402594|ref|ZP_15852451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421407490|ref|ZP_15857298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412363|ref|ZP_15862118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416418|ref|ZP_15866138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421420567|ref|ZP_15870244.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427100|ref|ZP_15876724.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428966|ref|ZP_15878567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436344|ref|ZP_15885876.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421440629|ref|ZP_15890105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445435|ref|ZP_15894861.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447540|ref|ZP_15896939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421886671|ref|ZP_16317845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|436624284|ref|ZP_20514958.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436698052|ref|ZP_20518275.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436795787|ref|ZP_20522518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807028|ref|ZP_20527142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813042|ref|ZP_20531327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846750|ref|ZP_20539520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436850714|ref|ZP_20541382.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436859829|ref|ZP_20547715.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866727|ref|ZP_20552156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871151|ref|ZP_20554549.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436880927|ref|ZP_20560526.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889814|ref|ZP_20565480.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436898136|ref|ZP_20570147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903862|ref|ZP_20574131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913077|ref|ZP_20578644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917495|ref|ZP_20581003.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925178|ref|ZP_20585652.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436937528|ref|ZP_20592655.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436944730|ref|ZP_20597140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436947067|ref|ZP_20598224.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959007|ref|ZP_20603458.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436973524|ref|ZP_20610787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436987555|ref|ZP_20616101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436994953|ref|ZP_20619117.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437006458|ref|ZP_20622695.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437017141|ref|ZP_20626198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437027814|ref|ZP_20630521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437041703|ref|ZP_20635663.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437047723|ref|ZP_20639070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437056212|ref|ZP_20643747.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437069008|ref|ZP_20651022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077966|ref|ZP_20655824.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083808|ref|ZP_20659375.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089230|ref|ZP_20662026.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437106080|ref|ZP_20667220.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437120160|ref|ZP_20671298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129117|ref|ZP_20675743.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437137020|ref|ZP_20680088.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437144740|ref|ZP_20685211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437151618|ref|ZP_20689425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163836|ref|ZP_20696814.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437167610|ref|ZP_20698881.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437174616|ref|ZP_20702261.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437187466|ref|ZP_20710006.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437235734|ref|ZP_20713864.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437258921|ref|ZP_20716821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437271113|ref|ZP_20723474.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274146|ref|ZP_20725147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437284399|ref|ZP_20729570.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307422|ref|ZP_20734815.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437333401|ref|ZP_20742337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437337522|ref|ZP_20743277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437360475|ref|ZP_20748283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412006|ref|ZP_20753179.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437439735|ref|ZP_20757354.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437460086|ref|ZP_20761295.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437475694|ref|ZP_20766867.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493315|ref|ZP_20772089.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437515892|ref|ZP_20777999.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437536148|ref|ZP_20781659.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437558984|ref|ZP_20785400.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574563|ref|ZP_20789835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437591341|ref|ZP_20794769.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437610848|ref|ZP_20801159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437615406|ref|ZP_20802212.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437642835|ref|ZP_20808283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437663317|ref|ZP_20813928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437685253|ref|ZP_20819019.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697203|ref|ZP_20822766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437713357|ref|ZP_20827338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736658|ref|ZP_20832849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748959|ref|ZP_20833763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437805846|ref|ZP_20839380.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437902940|ref|ZP_20849931.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438088731|ref|ZP_20860021.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438103842|ref|ZP_20865650.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438109709|ref|ZP_20867560.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438136523|ref|ZP_20874437.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445139554|ref|ZP_21384431.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445151741|ref|ZP_21390512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445167291|ref|ZP_21394359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445227985|ref|ZP_21404518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445341125|ref|ZP_21416641.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445347558|ref|ZP_21419213.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445360696|ref|ZP_21423627.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|197939130|gb|ACH76463.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206711200|emb|CAR35576.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625935|gb|EGE32280.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|357208410|gb|AET56456.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|379984067|emb|CCF90118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|392808422|gb|EJA64472.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392828895|gb|EJA84580.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392829377|gb|EJA85054.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|395983498|gb|EJH92690.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990633|gb|EJH99763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395991297|gb|EJI00422.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395997052|gb|EJI06094.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395998956|gb|EJI07982.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396004336|gb|EJI13319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396016097|gb|EJI24966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396016184|gb|EJI25052.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017911|gb|EJI26775.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396025883|gb|EJI34657.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396030910|gb|EJI39639.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396031000|gb|EJI39728.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396042678|gb|EJI51299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044595|gb|EJI53191.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396045706|gb|EJI54298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396052595|gb|EJI61101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396053704|gb|EJI62198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396059828|gb|EJI68276.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396065738|gb|EJI74111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396066122|gb|EJI74487.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074842|gb|EJI83126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434940545|gb|ELL47161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962021|gb|ELL55254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434963196|gb|ELL56319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968984|gb|ELL61710.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975467|gb|ELL67755.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977488|gb|ELL69606.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434987228|gb|ELL78870.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434987571|gb|ELL79211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434993859|gb|ELL85243.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|434998886|gb|ELL90099.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435001265|gb|ELL92383.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435004449|gb|ELL95412.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006805|gb|ELL97664.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435013684|gb|ELM04306.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435017957|gb|ELM08434.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435024750|gb|ELM14955.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031337|gb|ELM21309.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035092|gb|ELM24939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435037821|gb|ELM27604.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435040543|gb|ELM30299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435053716|gb|ELM43153.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435055052|gb|ELM44471.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058085|gb|ELM47441.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435059047|gb|ELM48338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063298|gb|ELM52451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435070606|gb|ELM59589.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435082225|gb|ELM70849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435084867|gb|ELM73433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435085969|gb|ELM74516.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435092972|gb|ELM81314.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435098076|gb|ELM86327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099725|gb|ELM87917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435102578|gb|ELM90682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435106892|gb|ELM94889.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435115377|gb|ELN03144.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435121259|gb|ELN08805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127377|gb|ELN14739.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127464|gb|ELN14825.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435135039|gb|ELN22149.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138739|gb|ELN25764.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435140410|gb|ELN27371.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144519|gb|ELN31360.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435151384|gb|ELN38036.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435157152|gb|ELN43614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435157727|gb|ELN44165.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435165585|gb|ELN51611.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435170439|gb|ELN56187.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435176408|gb|ELN61787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435185396|gb|ELN70263.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435186499|gb|ELN71330.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435187736|gb|ELN72479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435189028|gb|ELN73675.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435196976|gb|ELN81293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435203871|gb|ELN87608.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210595|gb|ELN93836.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435212364|gb|ELN95362.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222010|gb|ELO04148.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435223560|gb|ELO05594.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228452|gb|ELO09896.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435229138|gb|ELO10528.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239405|gb|ELO19894.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435240232|gb|ELO20648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435245792|gb|ELO25821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252278|gb|ELO31875.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435254935|gb|ELO34318.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262414|gb|ELO41504.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435266742|gb|ELO45475.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435267111|gb|ELO45823.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435275676|gb|ELO53753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435276384|gb|ELO54395.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285391|gb|ELO62793.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435286707|gb|ELO63956.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435301929|gb|ELO77928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435311884|gb|ELO85920.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435317405|gb|ELO90456.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435320695|gb|ELO93214.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435322858|gb|ELO95045.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435332182|gb|ELP03142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444854188|gb|ELX79254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444855224|gb|ELX80273.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444865568|gb|ELX90337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444866642|gb|ELX91366.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871796|gb|ELX96190.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876809|gb|ELY00968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444884961|gb|ELY08770.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 332
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|429082481|ref|ZP_19145549.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
gi|426548749|emb|CCJ71590.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
Length = 313
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ++ LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 2 LDWTDRHCRYFLRQLSSQVLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+D IKAMRD V I +TVK
Sbjct: 62 AQCAKLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADGIKAMRDVVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV TV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 122 TRIGIDDQDSYEFLCDFVNTVAEQGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT +++ HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 182 LKRDFPHLTMSINGGIKTLEDVKTHLAHMDGVMVGREAYQNPGILASVDREIFGLDTPDA 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+N + +TRHMLGL + I G+ ++++ LS+
Sbjct: 242 DP--VAVVRAMYPYIERELSNGTY--LGHVTRHMLGLFQGIPGARQWRRHLSE 290
>gi|430809594|ref|ZP_19436709.1| tRNA-dihydrouridine synthase A [Cupriavidus sp. HMR-1]
gi|429497955|gb|EKZ96472.1| tRNA-dihydrouridine synthase A [Cupriavidus sp. HMR-1]
Length = 297
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 185/271 (68%), Gaps = 11/271 (4%)
Query: 25 MFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPS 83
M TT A+L G+ LDF+A E P+A Q+G +EP LA++AK+ ++WGY EINLNCGCPS
Sbjct: 1 MVTTGALLHGDVARHLDFSAAEQPVALQLGGSEPADLAQAAKLGEQWGYKEINLNCGCPS 60
Query: 84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 143
RVQ G FGA LM +P LV+DC+KAMRD V + +TVKHRIGID I Y FVRDFVGT++
Sbjct: 61 ERVQRGAFGACLMAEPQLVADCVKAMRDVVSVPVTVKHRIGIDTIEHYGFVRDFVGTIAE 120
Query: 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203
AGC FIVHARNA LK L+PK+NR+IP L+Y Y LK++FP LEI+INGG+ + EID
Sbjct: 121 AGCDIFIVHARNAILKGLSPKENREIPPLRYEVAYELKREFPHLEILINGGVVSYGEIDE 180
Query: 204 HLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKI 263
HL ++DGVM+GR+AY +P+ +S D +Y T ++ M Q + +
Sbjct: 181 HLRHVDGVMIGRQAYHDPYFLSEMDARFYGG-------TEPNVTREMAELAMQAYIGDLV 233
Query: 264 KN---INSITRHMLGLMKNIKGSNKFKQILS 291
+ + + TRHMLGL + I G ++++LS
Sbjct: 234 EKGGYMGAATRHMLGLHRGIYGGRGWRRVLS 264
>gi|426410390|ref|YP_007030489.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. UW4]
gi|426268607|gb|AFY20684.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. UW4]
Length = 331
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|343515823|ref|ZP_08752871.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
gi|342797458|gb|EGU33106.1| tRNA-dihydrouridine synthase A [Vibrio sp. N418]
Length = 346
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N +EHP+ Q+G + L
Sbjct: 33 LDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGDFLAYNEQEHPLVLQLGGSNTSDL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 93 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 153 TRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
LKKDF L I +NGG+KT +E+ HL ++DGVM+GREAY+NP++++ D L + + P
Sbjct: 213 LKKDFAHLVIAVNGGVKTLQEVQEHLKHLDGVMVGREAYQNPYILAEVDQLIFGLDKP-- 270
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QQL+N + +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 271 -VKKRTQVVEEMYPYIEQQLSNGAY--LGHMTRHMLGLFQNMPGARQWRRHISE 321
>gi|254508997|ref|ZP_05121103.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
gi|219548101|gb|EED25120.1| tRNA-dihydrouridine synthase A [Vibrio parahaemolyticus 16]
Length = 315
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 199/294 (67%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 2 LDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIYGKGDFLAYNEEEHPVALQLGGSNPQDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AMRD V+I +TVK
Sbjct: 62 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMRDVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTDFVSIVSEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDF L I +NGG+KT + HL ++DGVM+GREAY+NP+L++ D + + P
Sbjct: 182 LKKDFAHLNIAVNGGVKTLGDSLSHLEHVDGVMVGREAYQNPYLLAEVDQQIFGLDKP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI QL +K + ITRHM+GL + + G+ ++++ +S+
Sbjct: 240 -IKKRSQVVKEMYPYIEAQL--SKGAYLGHITRHMIGLFQAMPGARQWRRYISE 290
>gi|309787535|ref|ZP_07682147.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
gi|308925113|gb|EFP70608.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
Length = 339
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCGFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|416519302|ref|ZP_11739838.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363558367|gb|EHL42559.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
Length = 316
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 5 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 64
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 65 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 124
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 125 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 184
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 185 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 244
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 245 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 293
>gi|168236934|ref|ZP_02661992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736682|ref|YP_002117177.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194712184|gb|ACF91405.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289961|gb|EDY29320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 345
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 34 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VTVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|269137592|ref|YP_003294292.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|387866350|ref|YP_005697819.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
gi|267983252|gb|ACY83081.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|304557663|gb|ADM40327.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
Length = 352
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G + P L
Sbjct: 40 LDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSNPADL 99
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + + GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V I +TVK
Sbjct: 100 ARCAHLAEARGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVSIPVTVK 159
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID +SY F+ DF+GTV+ G C TFIVHAR A+L L+PK+NR++P L Y VY
Sbjct: 160 TRIGIDAQDSYPFLCDFIGTVAGQGECDTFIVHARKAWLSGLSPKENREVPPLDYPRVYR 219
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+ I +NGG+K E HL ++DGVM+GREAY NP +++ D +
Sbjct: 220 LKQDFPQFTIALNGGVKRLDEALTHLQHVDGVMMGREAYHNPGILAQVDRQLFDA--DAA 277
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P + ++ + YI ++L + ITRH+LGL + I G+ ++++ LS+
Sbjct: 278 VPDSVAVVRALYPYIERELAQGTY--LGHITRHILGLFQGIPGARQWRRHLSE 328
>gi|389685150|ref|ZP_10176474.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis O6]
gi|388550803|gb|EIM14072.1| tRNA dihydrouridine synthase A [Pseudomonas chlororaphis O6]
Length = 336
Score = 299 bits (766), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHERFLRHDESEHPLALQLGGSTPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VISRAEALAQLRPYIARHLATGGA--MHHITRHVLGLGTGFPGARKFRQLLS 313
>gi|407362766|ref|ZP_11109298.1| tRNA-dihydrouridine synthase A [Pseudomonas mandelii JR-1]
Length = 339
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 29 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 149 KHRIGINGRDSYEELVDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 209 LKADFPELEIVLNGGIKTLEACHAHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 267 VISRAEALAKLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 316
>gi|289627280|ref|ZP_06460234.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289650430|ref|ZP_06481773.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584664|ref|ZP_16659768.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330869475|gb|EGH04184.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 339
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 200/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELSDFVGKVHEAGCESFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + S P
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDSTAP-- 266
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 -VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|110807934|ref|YP_691454.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5 str. 8401]
gi|384545679|ref|YP_005729743.1| yjbN family TIM-barrel protein [Shigella flexneri 2002017]
gi|417709427|ref|ZP_12358449.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|424840305|ref|ZP_18264942.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
gi|110617482|gb|ABF06149.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281603466|gb|ADA76450.1| TIM-barrel protein, yjbN family [Shigella flexneri 2002017]
gi|332998117|gb|EGK17721.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|383469357|gb|EID64378.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
Length = 347
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 36 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 95
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 96 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 155
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 156 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 216 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + I RHMLGL + I G+ ++++ LS+
Sbjct: 276 DP--VAVVRAMYPYIEHELSQGTY--LGHIIRHMLGLFQGIPGARQWRRYLSE 324
>gi|387614780|ref|YP_006117896.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
gi|309704516|emb|CBJ03865.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
Length = 345
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|254449021|ref|ZP_05062475.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HTCC5015]
gi|198261415|gb|EDY85706.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HTCC5015]
Length = 315
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/294 (46%), Positives = 203/294 (69%), Gaps = 8/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ ++ LYTEM TT A+L GN L F+++EHP+A Q+G +EP+
Sbjct: 2 MDWTDRHCRYFHRLLSPHALLYTEMVTTGALLHGNVSRHLAFHSDEHPVALQLGGSEPEA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A+ A++ ++WGYDE+N+N GCPS+RVQ+G FGA LM +P V+ C+ AM+ +V I +TV
Sbjct: 62 MARCAELAERWGYDEVNINVGCPSDRVQSGAFGACLMAEPDTVASCVAAMKSAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD++ Y + DF V +A C VHAR A+LK L+PK+NR IP L Y+ VY
Sbjct: 122 KTRIGIDDMDDYQNLFDFTAKVIAANCDNLTVHARKAWLKGLSPKENRDIPPLMYDKVYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+D+PELE+ INGGI + HL + DGVM+GR AY+NP+ + + N + L +
Sbjct: 182 LKRDYPELEVCINGGITDSASVSEHLRHTDGVMIGRAAYQNPWWLVELEQNLFDELHR-- 239
Query: 240 IPTRIDIINRMILYIRQQ-LNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PT+ +++ M+ YI + L ++K+ ITRHMLGL + + G+ ++++ LS+
Sbjct: 240 -PTQHEVVEGMLEYIEAELLAGGQLKH---ITRHMLGLFQAVPGAKQWRRHLSE 289
>gi|82779541|ref|YP_405890.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae Sd197]
gi|81243689|gb|ABB64399.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 345
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCGFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|30064638|ref|NP_838809.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|56480527|ref|NP_709871.2| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 301]
gi|30042897|gb|AAP18620.1| hypothetical protein S3574 [Shigella flexneri 2a str. 2457T]
gi|56384078|gb|AAN45578.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 339
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + I RHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIEHELSQGTY--LGHIIRHMLGLFQGIPGARQWRRYLSE 316
>gi|444375899|ref|ZP_21175150.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
gi|443679987|gb|ELT86636.1| tRNA dihydrouridine synthase A [Enterovibrio sp. AK16]
Length = 346
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L FN EEHP+A Q+G + P L
Sbjct: 33 LDWTDRHCRYFHRILSKNALLYTEMVTTGAIIHGKGDFLAFNEEEHPVALQLGGSNPADL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ AM++ V+I +TVK
Sbjct: 93 ATCAKLAVERGYDEINLNVGCPSDRVQNGRFGACLMGEAELVAQCVSAMKEVVDIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV TVS G C F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 153 TRIGIDDQDSYEFLVDFVRTVSEKGSCDNFTIHARKAWLSGLSPKENREIPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP L + INGGIK+ +E + HL ++DGVM+GREAY++P++++ D +
Sbjct: 213 LKKDFPHLTMAINGGIKSLEEAEEHLKHLDGVMIGREAYQSPYMLAEVDNRLFGG--DAP 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R D + M YI +L +K +N I+RHMLGL +N+ G+ ++++ +S+
Sbjct: 271 IIKRSDAVKAMFPYIEAEL--SKGTYLNHISRHMLGLFQNMPGARQWRRYISE 321
>gi|415857056|ref|ZP_11531885.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|417704087|ref|ZP_12353190.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|417714396|ref|ZP_12363352.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|417719249|ref|ZP_12368136.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|417725059|ref|ZP_12373851.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|417730310|ref|ZP_12378999.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|417735422|ref|ZP_12384064.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|417740171|ref|ZP_12388742.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|417745259|ref|ZP_12393779.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|417830660|ref|ZP_12477195.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|418258885|ref|ZP_12882011.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
gi|420322314|ref|ZP_14824136.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|420333272|ref|ZP_14834914.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|420343712|ref|ZP_14845176.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|420375879|ref|ZP_14875691.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|313648753|gb|EFS13193.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|332751993|gb|EGJ82386.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|332752162|gb|EGJ82554.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|332753251|gb|EGJ83632.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|332764755|gb|EGJ94984.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|332999047|gb|EGK18636.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|332999143|gb|EGK18730.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|333014208|gb|EGK33564.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|333014419|gb|EGK33770.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|335572601|gb|EGM58972.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|391245817|gb|EIQ05083.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|391246770|gb|EIQ06028.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|391263439|gb|EIQ22445.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|391308582|gb|EIQ66278.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|397895072|gb|EJL11506.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
Length = 345
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + I RHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIEHELSQGTY--LGHIIRHMLGLFQGIPGARQWRRYLSE 322
>gi|38604722|sp|Q7UBC5.2|DUSA_SHIFL RecName: Full=tRNA-dihydrouridine synthase A
Length = 330
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + I RHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIEHELSQGTY--LGHIIRHMLGLFQGIPGARQWRRYLSE 307
>gi|417543207|ref|ZP_12194442.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353657123|gb|EHC97661.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
Length = 332
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VVVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|237797725|ref|ZP_04586186.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806004|ref|ZP_04592708.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331020575|gb|EGI00632.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331027114|gb|EGI07169.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 339
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++R++ LYTEM TT A+L G++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRLLSRHALLYTEMVTTGALLHGDRDRFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVVIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGTVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQVFDGVMLGREAYHNPYLLAQVDKQLFGSMA--P 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRHAALEAMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|419798034|ref|ZP_14323477.1| tRNA dihydrouridine synthase A [Neisseria sicca VK64]
gi|385696375|gb|EIG26864.1| tRNA dihydrouridine synthase A [Neisseria sicca VK64]
Length = 337
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 208/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + AI+ G+K L FN E P+A Q+G ++P
Sbjct: 17 LDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D+V I +TV
Sbjct: 77 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQDAVGIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 137 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 196
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LKK+FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 197 RLKKEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 253
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 254 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 313
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 314 DNDGSLILEA 323
>gi|386017996|ref|YP_005936297.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis AJ13355]
gi|327396079|dbj|BAK13501.1| tRNA-dihydrouridine synthase A DusA [Pantoea ananatis AJ13355]
Length = 331
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ+T + LYTEM TT AI+ K L ++ +EHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRQLTADTLLYTEMVTTGAIIHGKGDYLAYSEQEHPVALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ GYDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V+I +TVK
Sbjct: 76 AQCAALAEQRGYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADGIKAMRDVVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDDQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I INGG+KT E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 196 LKRDFPQLTIAINGGVKTLGEAKTHLQHLDGVMMGREAYQNPGILAQVDRELFGRDRPAV 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L +K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--VAVVRAMYPYIEAEL--SKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 304
>gi|410090253|ref|ZP_11286850.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
gi|409762459|gb|EKN47478.1| tRNA-dihydrouridine synthase A [Pseudomonas viridiflava UASWS0038]
Length = 339
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R +++++ LYTEM TT A+L G+ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRFFLRLLSKHALLYTEMVTTGALLHGDSARFLQHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARMAEGVGYDEVNLNVGCPSDRVQNNMIGACLMGHPELVADCVKAMRDAVSIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYEQLCDFVGKVHEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 209 LKKDFPQLEIVLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + + YI L + N++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 267 VISRAEALEALRPYIEAHLASG--GNMHHITRHVLGLAQGFPGARRFRQLLS 316
>gi|452745003|ref|ZP_21944841.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
gi|452086843|gb|EME03228.1| tRNA-dihydrouridine synthase A [Mannheimia haemolytica serotype 6
str. H23]
Length = 325
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 205/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R + LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++ + GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+VEI +TVK
Sbjct: 79 AHCAKLVAERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PK+NR+IP L Y+ VY L
Sbjct: 139 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLTGLSPKENREIPPLDYDRVYQL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP ++ D + N P
Sbjct: 198 KRDFPHLKISINGGIKTIEEIKQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRP--- 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M YI ++L K +N I RHMLG ++ KG+ ++++ LS+
Sbjct: 255 LVTAKEAVEKMFPYIEREL--AKGVYLNHIVRHMLGAFQHCKGARQWRRHLSE 305
>gi|443644533|ref|ZP_21128383.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|443284550|gb|ELS43555.1| tRNA dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 332
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 22 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDESEHPLALQLGGSTAAD 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 82 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 142 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 202 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAP 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 260 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 309
>gi|399007842|ref|ZP_10710340.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM17]
gi|398119174|gb|EJM08882.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM17]
Length = 339
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 29 MDWTDRHCRFFLRLLSKHALLYTEMVTTGALLNGDHERFLRHDESEHPLALQLGGSTPAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD V I +TV
Sbjct: 89 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRDVVSIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 149 KHRIGINGRDSYEELCDFVGQVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 209 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 267 VISRAEALAQLRPYIARHLATGGA--MHHITRHVLGLGTGFPGARKFRQLLS 316
>gi|170026071|ref|YP_001722576.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis YPIII]
gi|169752605|gb|ACA70123.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis YPIII]
Length = 345
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKCDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQVDRELFD--PHAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALYPYIEQELSQGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|440721584|ref|ZP_20901981.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34876]
gi|440724630|ref|ZP_20904910.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34881]
gi|440363447|gb|ELQ00615.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34876]
gi|440369923|gb|ELQ06877.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae BRIP34881]
Length = 312
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 2 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDESEHPLALQLGGSTAAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 122 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 182 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGSTA--P 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 240 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 289
>gi|418866047|ref|ZP_13420511.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|392840561|gb|EJA96096.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 332
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 IRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|59710914|ref|YP_203690.1| tRNA-dihydrouridine synthase A [Vibrio fischeri ES114]
gi|59479015|gb|AAW84802.1| NifR3/Smm1 family protein [Vibrio fischeri ES114]
Length = 328
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ ++ LYTEM TT AI+ K L +N EEHP+A Q+G + K L
Sbjct: 15 LDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNVKDL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ M+ V+I +TVK
Sbjct: 75 VHCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVAEMKAVVDIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 135 TRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
+KKDFP+L I +NGGIKT E HL ++DGVM+GREAY++P+L++ D + S+ P
Sbjct: 195 IKKDFPQLIIAVNGGIKTLSEAKEHLEHLDGVMIGREAYQSPYLLAEVDQQLFGSDKP-- 252
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R +I+ M YI +QL N + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 253 -IKKRREIVESMYPYIERQLENGAY--LGHITRHMLGLFQSMPGARQWRRYISE 303
>gi|416464894|ref|ZP_11716492.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322642507|gb|EFY39107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
Length = 310
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 197/290 (67%), Gaps = 5/290 (1%)
Query: 4 TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKS 63
TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +LA
Sbjct: 2 TDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQLAHC 61
Query: 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123
AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK RI
Sbjct: 62 AKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRI 121
Query: 124 GIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK 182
GIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY LK+
Sbjct: 122 GIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKR 181
Query: 183 DFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPT 242
DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 182 DFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDADP- 240
Query: 243 RIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 241 -VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 287
>gi|261494145|ref|ZP_05990648.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496014|ref|ZP_05992424.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308264|gb|EEY09557.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310311|gb|EEY11511.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 325
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 205/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R + LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++ + GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+VEI +TVK
Sbjct: 79 AHCAKLVAERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PK+NR+IP L Y+ VY L
Sbjct: 139 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLTGLSPKENREIPPLDYDRVYQL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP ++ D + N P
Sbjct: 198 KRDFPHLKISINGGIKTIEEIKQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRP--- 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M YI ++L K +N I RHMLG ++ KG+ ++++ LS+
Sbjct: 255 LVTAKEAVEKMFPYIEREL--AKGVYLNHIVRHMLGAFQHCKGARQWRRHLSE 305
>gi|421562563|ref|ZP_16008389.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2795]
gi|421907463|ref|ZP_16337339.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha704]
gi|393291421|emb|CCI73331.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha704]
gi|402342707|gb|EJU77865.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2795]
Length = 336
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 207/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGELPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQTQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|423685022|ref|ZP_17659830.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
gi|371496069|gb|EHN71663.1| tRNA-dihydrouridine synthase A [Vibrio fischeri SR5]
Length = 328
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ ++ LYTEM TT AI+ K L +N EEHP+A Q+G + K L
Sbjct: 15 LDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNVKDL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ M+ V+I +TVK
Sbjct: 75 VHCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVAEMKAVVDIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 135 TRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
+KKDFP+L I +NGGIKT E HL ++DGVM+GREAY++P+L++ D + S+ P
Sbjct: 195 IKKDFPQLIIAVNGGIKTLAEAKEHLEHLDGVMIGREAYQSPYLLAEVDQQLFGSDKP-- 252
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R +I+ M YI +QL N + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 253 -IKKRREIVESMYPYIERQLENGAY--LGHITRHMLGLFQSMPGARQWRRYISE 303
>gi|86148209|ref|ZP_01066506.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218708347|ref|YP_002415968.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
gi|85833979|gb|EAQ52140.1| NifR3/Smm1 family protein [Vibrio sp. MED222]
gi|218321366|emb|CAV17316.1| tRNA-dihydrouridine synthase A [Vibrio splendidus LGP32]
Length = 333
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L++N +EHP+A Q+G + P L
Sbjct: 20 LDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYNEQEHPLALQLGGSNPVDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ +I ITVK
Sbjct: 80 AACAKLAGERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCVSAMKEVTDIPITVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TVS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 140 TRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+KKDF +L I +NGGI T ++ HL ++DGVM+GREAY +PF+++ D + + P
Sbjct: 200 IKKDFSDLVIAVNGGITTLEQTKEHLQHLDGVMIGREAYHSPFILAEVDQQIFGLDTP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI +QL+N ++ I+RHMLGL +++ G+ ++++ +S+
Sbjct: 258 -IKKRSQVVEEMYPYIERQLSNG--ASLGHISRHMLGLFQSMPGARQWRRYISE 308
>gi|422599027|ref|ZP_16673278.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|330989295|gb|EGH87398.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 339
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELSDFVGKVHEAGCESFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCGEHLQTFDGVMLGREAYHNPYLLAQVDQQLFDS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|167855851|ref|ZP_02478602.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
gi|167853001|gb|EDS24264.1| tRNA-dihydrouridine synthase A [Haemophilus parasuis 29755]
Length = 323
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 202/292 (69%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ T++S LY+EM AIL K L ++ E+P+A Q+G ++P++L
Sbjct: 16 LDWTTRHCRYFHRQFTQHSLLYSEMIIAPAILHAKYDLLAYDPTENPVALQLGGSDPEQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK++++ GY EINLN GCPS+RVQNG FGA LM K LV+ C++AM+ V I +TVK
Sbjct: 76 AKCAKLVEERGYAEINLNVGCPSDRVQNGMFGACLMGKADLVARCVEAMKKEVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ + C FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKIQPY-CNDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + P I
Sbjct: 195 KRDFPHLKISINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLGYIDQELFD--PNADI 252
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + +M+ YI QQL+ +N I RH+LG +N KG+ ++++ LS+
Sbjct: 253 VTPKQAVEKMLPYIEQQLSQGVY--LNHIVRHILGAFQNCKGARRWRRHLSE 302
>gi|332163190|ref|YP_004299767.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310201|ref|YP_006006257.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243182|ref|ZP_12869673.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550712|ref|ZP_20506755.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica IP 10393]
gi|318603925|emb|CBY25423.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667420|gb|ADZ44064.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861940|emb|CBX72109.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica W22703]
gi|351777380|gb|EHB19598.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431787811|emb|CCO69795.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica IP 10393]
Length = 348
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 94 AHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEASLVADCIKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDELDSYEFLCEFVQTVAERGECDIFTIHARKAWLSGLSPKENREVPPLNYERVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 214 LKRDFPALTIAINGGVKTLAEAKEHLKHVDGVMMGREAYQNPTILTQVDRELFD--PNAP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 272 VVDSVKAIETLFPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 322
>gi|254362517|ref|ZP_04978621.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
gi|153094117|gb|EDN75017.1| tRNA-dihydrouridine synthase [Mannheimia haemolytica PHL213]
Length = 325
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 205/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R + LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRQALLYTEMITAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++ + GY EINLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+VEI +TVK
Sbjct: 79 AHCAKLVAERGYAEINLNVGCPSDRVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PK+NR+IP L Y+ VY L
Sbjct: 139 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLTGLSPKENREIPPLDYDRVYQL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L+I INGGIKT +EI HL ++DGVM+GREAY+NP ++ D + N P
Sbjct: 198 KRDFPHLKISINGGIKTIEEIKQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRP--- 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M YI ++L K +N I RHMLG ++ KG+ ++++ LS+
Sbjct: 255 LVTAKEAVEKMFPYIEREL--AKGIYLNHIVRHMLGAFQHCKGARQWRRHLSE 305
>gi|442319612|ref|YP_007359633.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
gi|441487254|gb|AGC43949.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
Length = 332
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQI++++ LYTEM TT A+L G+++ L + EHP+A Q+G +EP+
Sbjct: 15 MDWTDRHCRYFHRQISQHTLLYTEMLTTGAVLHGDRERLLGYEPAEHPVAIQLGGSEPEA 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA+I + WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMR +V I +TV
Sbjct: 75 LAESARIAEAWGYDEVNLNVGCPSDRVQSGRFGACLMAEPELVARLVAAMRAAVRIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + FV +++ GC FIVHAR A+L+ L+PK+NR +P L+Y V+
Sbjct: 135 KSRIAIDELEEWPTLERFVRLIAAEGCTRFIVHARKAWLQGLSPKENRDVPPLRYELVHQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L+I INGGIKT L +DGVM+GR Y+NP+L++ D ++ Q
Sbjct: 195 LKQELPHLDISINGGIKTLDAAAEQLTKVDGVMIGRAVYENPYLLAEADRRFFGV--QEA 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R +++ M+ YI + + + ++S+TRHMLGL + + G+ +++ LS+
Sbjct: 253 PRARHEVVEAMLPYIER--SRQRGAPLSSVTRHMLGLFQGLPGARAWRRHLSE 303
>gi|419803161|ref|ZP_14328335.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|419844573|ref|ZP_14367861.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
gi|385188331|gb|EIF35818.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK262]
gi|386417233|gb|EIJ31720.1| tRNA dihydrouridine synthase A [Haemophilus parainfluenzae HK2019]
Length = 328
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++ + LYTEM T AI+ K LDF+ +E+P+A Q+G N+P +L
Sbjct: 19 LDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGNDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI M+ V I +TVK
Sbjct: 79 KHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVAECIAEMQSVVNIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ DF+ V AGC+ FIVHAR A+L L+PK+NR+IP L Y+ VY L
Sbjct: 139 TRIGIDDLDSYEFLCDFIEKVHHAGCQEFIVHARKAWLSGLSPKENREIPPLDYDRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP+L I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D + I
Sbjct: 199 KKDFPQLTIAINGGIKTIEEMKHHLQFVDGVMVGREAYQNPSLLGYVDQMLFD--ANANI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + M YI +QL+ +N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTPRQAVEAMFPYIEKQLSQGVY--LNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|227357643|ref|ZP_03841996.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
gi|227162353|gb|EEI47357.1| tRNA-dihydrouridine synthase A [Proteus mirabilis ATCC 29906]
Length = 344
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+ Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPISLQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V+I +TVK
Sbjct: 94 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D + N Q
Sbjct: 214 LKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVDHVLFDN--QLP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 272 VTNAVAAVKAMYPYIEKELSQGTY--LGHITRHMLGIFQGIPGARQWRRHLSE 322
>gi|417439152|ref|ZP_12161938.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353612375|gb|EHC64763.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 332
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTIDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|302184838|ref|ZP_07261511.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
642]
Length = 312
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 2 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 122 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 182 LKSDFPDLEIVLNGGIKTLEQCSEHLQAFDGVMLGREAYHNPYLLAHVDQQLFGSTA--P 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 240 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 289
>gi|410694288|ref|YP_003624910.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
gi|294340713|emb|CAZ89105.1| tRNA-dihydrouridine synthase A [Thiomonas sp. 3As]
Length = 352
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 194/292 (66%), Gaps = 6/292 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR ITR + LYTEM TT A+L G+ LD+++ EHP+A Q+G +EP
Sbjct: 11 LDWTDRHCRYFHRLITRQALLYTEMVTTGALLYGDVARHLDYSSHEHPVALQLGGSEPVD 70
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDI 117
LA A++ +WGYDEINLNCGCPS RVQ G FGA LM +P V D + AM ++V I +
Sbjct: 71 LACCARLALEWGYDEINLNCGCPSPRVQRGAFGACLMAEPSRVRDSVAAMVEAVSGTIPV 130
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
TVKHRIG+D +SY FVRDFVGTVS GC TFIVHAR+A+L L+PK+NR IP L+ F+
Sbjct: 131 TVKHRIGVDHEDSYGFVRDFVGTVSQGGCETFIVHARSAWLDGLSPKENRDIPPLRPEFI 190
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
L++DFP L ++NGGIKT ++I L + GVM+GR AY++P+ ++ +D + +
Sbjct: 191 LQLRRDFPALAFVLNGGIKTGQQIGEWLPQVSGVMVGRAAYQDPWSLATWDREFLGSA-D 249
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQI 289
P R + +M YI K + +ITRHML L K G +++Q+
Sbjct: 250 SAAPEREIVEEQMGAYIAAW--KAKGLHPQAITRHMLNLWKGQPGGRRWRQV 299
>gi|349610782|ref|ZP_08890109.1| hypothetical protein HMPREF1028_02084 [Neisseria sp. GT4A_CT1]
gi|348615781|gb|EGY65291.1| hypothetical protein HMPREF1028_02084 [Neisseria sp. GT4A_CT1]
Length = 340
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 209/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + AI+ G+K L FN E P+A Q+G ++P
Sbjct: 20 LDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D+V I +TV
Sbjct: 80 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQDAVGIPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 140 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 199
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 200 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 256
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 257 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 316
Query: 298 IDNFQFFLNT 307
++ L+
Sbjct: 317 DNDGSLILDA 326
>gi|161870721|ref|YP_001599894.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 053442]
gi|161596274|gb|ABX73934.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 336
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGG+ T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPELEIIINGGVTTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|113460197|ref|YP_718254.1| tRNA-dihydrouridine synthase A [Haemophilus somnus 129PT]
gi|112822240|gb|ABI24329.1| tRNA-U16,U17-dihydrouridine synthase [Haemophilus somnus 129PT]
Length = 328
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++Y+ LYTEM TT AI+ K L ++ E+P+A Q+G ++P+KL
Sbjct: 19 LDWTTRHCRFFHRQFSQYTLLYTEMVTTGAIIHAKYDHLAYDVSENPVALQLGGSDPEKL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK ++ GY EINLN GCPS+RVQNG FGA LM + LV++C+ AM+ +V I +TVK
Sbjct: 79 QYCAKKAEERGYQEINLNVGCPSDRVQNGMFGACLMARADLVAECVNAMQSAVNIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
R+GID+ +SY+F+ DF+ V + GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRLGIDEFDSYEFLCDFIEKVHNIGCQEFIIHARKAWLSGLSPKENREIPPLNYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP+L I INGGIKT +EI HLNY+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KKDFPDLLISINGGIKTLEEIQRHLNYVDGVMVGREAYQNPSLLGYIDQALFD--PSCAI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T I M YI QQL+ +N I RH+LG + KG+ ++++ +S+
Sbjct: 257 ITPRQAIENMFPYIEQQLSQGVY--LNHIARHLLGAFQQCKGARQWRRYMSE 306
>gi|422591186|ref|ZP_16665833.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878546|gb|EGH12695.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 339
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGTVHEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 209 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSVA--P 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRHEALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|66045176|ref|YP_235017.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. syringae
B728a]
gi|63255883|gb|AAY36979.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas syringae pv.
syringae B728a]
Length = 339
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCESFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPGLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|386616879|ref|YP_006136545.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
gi|332346048|gb|AEE59382.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
Length = 339
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 28 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 88 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 148 TRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 208 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 267
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 268 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 316
>gi|422654763|ref|ZP_16717494.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330967777|gb|EGH68037.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 336
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 26 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 146 KHRIGINGRDSYAELCDFVGTVHEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 206 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSV--AP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 264 VISRHEALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 313
>gi|422676216|ref|ZP_16735549.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
gi|330973923|gb|EGH73989.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. aceris
str. M302273]
Length = 339
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPGLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|168466925|ref|ZP_02700773.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418762767|ref|ZP_13318893.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767734|ref|ZP_13323798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771003|ref|ZP_13327020.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777295|ref|ZP_13333226.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782425|ref|ZP_13338289.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785444|ref|ZP_13341277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804306|ref|ZP_13359913.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419786385|ref|ZP_14312113.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795235|ref|ZP_14320838.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630652|gb|EDX49264.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392613183|gb|EIW95644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621731|gb|EIX04080.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392735026|gb|EIZ92207.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392735384|gb|EIZ92557.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392735496|gb|EIZ92668.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744112|gb|EJA01169.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392744288|gb|EJA01344.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392752541|gb|EJA09482.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392770825|gb|EJA27547.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 332
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQMLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VTVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|398864072|ref|ZP_10619612.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM78]
gi|398245835|gb|EJN31342.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM78]
Length = 312
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 122 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK D+PELEII+NGGIK+ + HL DGVMLGREAY NP++M+ D + +
Sbjct: 182 LKADYPELEIILNGGIKSLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 240 VITRAEALAQLRPYIAAHLEAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 289
>gi|419177772|ref|ZP_13721572.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
gi|378027302|gb|EHV89932.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
Length = 345
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ +F+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCNFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDIDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|340363631|ref|ZP_08685954.1| tRNA dihydrouridine synthase A [Neisseria macacae ATCC 33926]
gi|339885310|gb|EGQ75039.1| tRNA dihydrouridine synthase A [Neisseria macacae ATCC 33926]
Length = 337
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 209/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + AI+ G+K L FN E P+A Q+G ++P
Sbjct: 20 LDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D+V I +TV
Sbjct: 80 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQDAVGIPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 140 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 199
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 200 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 256
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 257 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 316
Query: 298 IDNFQFFLNT 307
++ L+
Sbjct: 317 DNDGSLILDA 326
>gi|205355015|ref|YP_002228816.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375125917|ref|ZP_09771081.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445131990|ref|ZP_21381991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|205274796|emb|CAR39855.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326630167|gb|EGE36510.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444849429|gb|ELX74540.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 332
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DG M+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGAMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|197334068|ref|YP_002155065.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
gi|197315558|gb|ACH65005.1| tRNA-dihydrouridine synthase A [Vibrio fischeri MJ11]
Length = 328
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQ++ ++ LYTEM TT AI+ K L +N EEHP+A Q+G + K L
Sbjct: 15 LDWTDRHCRYFHRQLSEHALLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNVKDL 74
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ M+ V+I +TVK
Sbjct: 75 VHCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVAEMKAVVDIPVTVK 134
Query: 121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TV GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 135 TRIGIDDQDSYEFLTKFVSTVHEKGGCDQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
+KKDFP+L I +NGGIKT E HL ++DGVM+GREAY++P+L++ D + S+ P
Sbjct: 195 IKKDFPQLIIAVNGGIKTLAEAKEHLAHLDGVMIGREAYQSPYLLAEVDQQLFGSDKP-- 252
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R +I+ M YI +QL N + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 253 -IKKRREIVESMYPYIERQLENGAY--LGHITRHMLGLFQSMPGARQWRRYISE 303
>gi|387773516|ref|ZP_10128874.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
gi|386904865|gb|EIJ69648.1| tRNA dihydrouridine synthase A [Haemophilus parahaemolyticus HK385]
Length = 321
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 206/293 (70%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K L++N E+P+A Q+G ++PK+L
Sbjct: 16 LDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYNPAENPVALQLGGSDPKQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++++ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+V+I +TVK
Sbjct: 76 AHCAKLVEERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAVQIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGIDD++SY+F+ DF+ V FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDDLDSYEFLCDFIEKVQPYS-NDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+DF L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFSHLNISINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLGEIDSQIFGENRP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI Q+L K +N I RH+LG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIEQEL--AKGVYLNHIVRHILGAFQNCKGARQWRRHLSE 302
>gi|343505067|ref|ZP_08742715.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
gi|342809053|gb|EGU44183.1| tRNA-dihydrouridine synthase A [Vibrio ichthyoenteri ATCC 700023]
Length = 326
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N +EHP+ Q+G + L
Sbjct: 13 LDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGDFLAYNEQEHPLVLQLGGSNTADL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V+I +TVK
Sbjct: 73 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKYVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV TVS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDHDSYEFLTDFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
LKKDF L I +NGG+KT +E HL ++DGVM+GREAY+NP++++ D L + + P
Sbjct: 193 LKKDFAHLVIAVNGGVKTLQETQEHLKHLDGVMVGREAYQNPYILAEVDQLIFGLDKP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI QQL+N + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -IKKRTQVVEEMYPYIEQQLSNGAY--LGHITRHMLGLFQNMPGARQWRRHISE 301
>gi|238764115|ref|ZP_04625069.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
gi|238697652|gb|EEP90415.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
Length = 343
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGDYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMAEANLVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDELDSYEFLCEFVQTVAGRGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVDRELFD--PNAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|240950331|ref|ZP_04754601.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
gi|240295142|gb|EER45961.1| tRNA-dihydrouridine synthase A [Actinobacillus minor NM305]
Length = 329
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 205/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPAENPVALQLGGSDPTQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++Q+ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+VEI +TVK
Sbjct: 76 AHCAKLVQERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAVEIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGID+++SY F+ DF+ + FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDELDSYAFLCDFIEKIQPYS-NDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKHHLQFVDGVMVGREAYQNPSLLGEIDSQIFNENKP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI ++L K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIEKEL--AKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|343511553|ref|ZP_08748712.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
gi|342797755|gb|EGU33394.1| tRNA-dihydrouridine synthase A [Vibrio scophthalmi LMG 19158]
Length = 326
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/294 (48%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N +EHP+ Q+G + L
Sbjct: 13 LDWTDRHCRYFHRLLSSETQLYTEMVTTGAIIHGKGDFLAYNEQEHPLVLQLGGSNTADL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V+I +TVK
Sbjct: 73 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDHDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
LKKDF L I +NGG+KT +E HL ++DGVM+GREAY+NP++++ D L + + P
Sbjct: 193 LKKDFAHLVIAVNGGVKTLQEAQEHLKHLDGVMVGREAYQNPYILAEVDQLIFGLDKP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QQL+N + +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRTQVVEEMYPYIEQQLSNGAY--LGHMTRHMLGLFQNMPGARQWRRHISE 301
>gi|153949073|ref|YP_001402722.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
31758]
gi|152960568|gb|ABS48029.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
31758]
Length = 345
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + SN P
Sbjct: 208 LKCDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQVDRELFDSNAP-- 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 -VVDSVKAIEALYPYIEQELSQGAY--LGHITRHVLGIFQGIPGARQWRRHLSE 316
>gi|300724718|ref|YP_003714043.1| tRNA -dihydrouridine synthase A [Xenorhabdus nematophila ATCC
19061]
gi|297631260|emb|CBJ91955.1| tRNA-dihydrouridine synthase A [Xenorhabdus nematophila ATCC 19061]
Length = 342
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K L +N +EHP+A Q+G +EP+ L
Sbjct: 31 LDWTDRHCRYFHRLLSKEALLYTEMVTTGAIIHGKGDYLAYNEQEHPLALQLGGSEPQAL 90
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A+I Q+ GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAM+D V+I +TVK
Sbjct: 91 AQCARIAQEKGYDEINLNVGCPSDRVQNGRFGACLMGDAALVADCVKAMQDVVDIPVTVK 150
Query: 121 HRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ T V ++ C F++HAR A+L L+PK+NR+IP L Y VY
Sbjct: 151 TRIGIDEQDSYEFLCDFIETVVKNSDCDNFVIHARKAWLSGLSPKENREIPPLDYPRVYQ 210
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D ++
Sbjct: 211 LKNDFPQLTFSINGGIKSLEEAKQHLQYVDGVMIGREAYQNPSMLAHVDRELFNQTS--P 268
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ ++ + + YI Q+L +K + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 269 VTNTVEAVQALYPYIEQEL--SKGTYLGHITRHILGIFQGIPGARQWRRHLSE 319
>gi|257464833|ref|ZP_05629204.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
gi|257450493|gb|EEV24536.1| tRNA-dihydrouridine synthase A [Actinobacillus minor 202]
Length = 324
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 205/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K L+++ E+P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSQHALLYTEMITAPAIIHAKYDLLEYDPAENPVALQLGGSDPAQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++Q+ GY E+NLN GCPS+RVQNG FGA LM K LV+DCIKAM+D+VEI +TVK
Sbjct: 76 AHCAKLVQERGYAEVNLNVGCPSDRVQNGMFGACLMGKADLVADCIKAMQDAVEIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGID+++SY F+ DF+ + FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDELDSYAFLCDFIEKIQPYS-NDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+DFP L I INGGIKT +EI HL ++DGVM+GREAY+NP L+ D + N P
Sbjct: 195 KRDFPHLNISINGGIKTIEEIKHHLQFVDGVMIGREAYQNPSLLGEIDSQIFNENKP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ T + + +M+ YI ++L K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 252 LVTAREAVEKMLPYIEKEL--AKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|408483012|ref|ZP_11189231.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. R81]
Length = 336
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 201/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ L N EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV++C+KAMRD+V I +TV
Sbjct: 86 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVAECVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAQLCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + + +
Sbjct: 206 LKRDFPELEIVLNGGIKTLEQCHEHLQVFDGVMLGREAYHNPYLLAEVDQQLFGS--EAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L + +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VISRAEALVQLRPYIAEHLASG--GSMHHITRHILGLGTGFPGARKFRQLLS 313
>gi|425069696|ref|ZP_18472811.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
gi|404596272|gb|EKA96793.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW6]
Length = 344
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+ Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPISLQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V+I +TVK
Sbjct: 94 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D + N Q
Sbjct: 214 LKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVDHVLFDN--QLP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 272 VTNAVAAVKAMYPYIEKELSQGTY--LGHITRHMLGIFQGIPGARQWRRHLSE 322
>gi|339486659|ref|YP_004701187.1| tRNA-dihydrouridine synthase A [Pseudomonas putida S16]
gi|338837502|gb|AEJ12307.1| tRNA-dihydrouridine synthase A [Pseudomonas putida S16]
Length = 312
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN-KKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L N + L + EHP+A Q+G + P
Sbjct: 2 MDWTDRHCRFFLRLLSKNTLLYTEMVTTGALLHNDAQRFLRHDVSEHPLALQLGGSVPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 62 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCGSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + + +
Sbjct: 182 LKADFPDLEIVLNGGIKTLAECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGS--EAA 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 240 VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 290
>gi|89093370|ref|ZP_01166319.1| NIFR3-like protein [Neptuniibacter caesariensis]
gi|89082349|gb|EAR61572.1| NIFR3-like protein [Oceanospirillum sp. MED92]
Length = 328
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 206/310 (66%), Gaps = 5/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +++ + LYTEM TT A++ L +N EE P+A Q+G + P+
Sbjct: 18 MDWTDRHCRYFHRILSQNAVLYTEMVTTGALIHAEADRFLRYNREEQPVALQLGGSNPED 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ K+ + +GY+E+NLN GCPS+RVQN GA LM P LVS+C++ M+ +V+I +TV
Sbjct: 78 LAQCTKMAEDYGYNEVNLNVGCPSDRVQNNMIGACLMAHPQLVSECLEKMQAAVDIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR GIDD++SY+ + FV TV +GC+ FI+HAR A L+ L+PK+NR IP LKY +VY
Sbjct: 138 KHRQGIDDMDSYEELVQFVDTVRQSGCKVFIIHARKAILQGLSPKENRDIPPLKYEWVYQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K++FPELE+ INGGIKT E HL ++DGVMLGREAY+NP+L+++ D +Y + K
Sbjct: 198 IKQEFPELEVHINGGIKTIDECHTHLQHVDGVMLGREAYQNPYLLADVDREFYGADSE-K 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
I + + M+ YI QQ+ +N + RHMLGL +G +F++ +S+
Sbjct: 257 ISRKAAALA-MVPYIEQQMEQG--VPLNHVVRHMLGLFHAQRGGKQFRRFISENAHKPGA 313
Query: 300 NFQFFLNTLN 309
+ LN L
Sbjct: 314 GIEVLLNALE 323
>gi|425071149|ref|ZP_18474255.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
gi|404599974|gb|EKB00427.1| tRNA-dihydrouridine synthase A [Proteus mirabilis WGLW4]
Length = 344
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+ Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPISLQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V+I +TVK
Sbjct: 94 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D + N Q
Sbjct: 214 LKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVDHVLFDN--QLP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 272 VTNAVAAVKAMYPYIEKELSQGTY--LGHITRHMLGIFQGIPGARQWRRHLSE 322
>gi|398957388|ref|ZP_10677246.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM33]
gi|398148326|gb|EJM37008.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM33]
Length = 331
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRYFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIK+ + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKADFPELEIILNGGIKSLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|290476894|ref|YP_003469805.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
gi|289176238|emb|CBJ83043.1| tRNA-dihydrouridine synthase A [Xenorhabdus bovienii SS-2004]
Length = 345
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 209/293 (71%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AI+ K + L +N EEHP+A Q+G +EP+ L
Sbjct: 34 LDWTDRHCRYFHRLLSKEALLYTEMVTTGAIIHGKGNYLTYNEEEHPLALQLGGSEPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+D IKAM+D V+I +TVK
Sbjct: 94 AQCAKIAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAKLVADGIKAMQDVVDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY+F+ DF+ T V ++ C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDEQDSYEFLCDFIDTVVKNSDCDNFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDFP+L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D ++
Sbjct: 214 LKKDFPQLTLSINGGIKSLEEAKQHLQYVDGVMIGREAYQNPSILAHVDRELFNETAL-- 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ I+ I + YI ++L +K + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 272 VVNTINAIKALYPYIEREL--SKGTYLGHITRHILGIFQGIPGARQWRRHLSE 322
>gi|388469355|ref|ZP_10143564.1| tRNA dihydrouridine synthase A [Pseudomonas synxantha BG33R]
gi|388006052|gb|EIK67318.1| tRNA dihydrouridine synthase A [Pseudomonas synxantha BG33R]
Length = 336
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ + L N EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSQHALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI +NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKRDFPELEINLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VITRAEALAQLRPYIAEHLATG--GSMHHITRHVLGLGTGFPGARKFRQLLS 313
>gi|288940773|ref|YP_003443013.1| TIM-barrel protein, yjbN family [Allochromatium vinosum DSM 180]
gi|288896145|gb|ADC61981.1| TIM-barrel protein, yjbN family [Allochromatium vinosum DSM 180]
Length = 310
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 206/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F R I+R++ LYTEM TT A++ G+++ L ++ EHP+A Q+G ++ +
Sbjct: 2 LDWTDRHCRYFLRLISRHTLLYTEMITTGALIHGDRERFLRYDPAEHPVALQLGGSDSED 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ ++WGYDEINLN GCPS+RVQNG FGA LM +P+LV++C+ AMR +V + +TV
Sbjct: 62 LARCARMAEEWGYDEINLNVGCPSDRVQNGRFGACLMAEPVLVAECVTAMRAAVRVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID+ +SY + DFVG +S AGC IVHAR A+LK L+PK+NR IP L+Y V +
Sbjct: 122 KHRIGIDERDSYAELVDFVGRLSEAGCDAIIVHARKAWLKGLSPKENRDIPPLRYEIVRD 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I+INGGI+T L+ +DGVM+GR AY NP++++ D + + +
Sbjct: 182 LKRDFPQLPIVINGGIETLDAAVDFLSDLDGVMIGRAAYHNPWILAEADRRVFGD--THP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR ++ I Y +QL +N+++RH+LGL + G+ +++ +S+
Sbjct: 240 APTRRQVLEAFIPYAERQLAAG--VPLNAMSRHLLGLFQGQPGARAWRRRISE 290
>gi|77460046|ref|YP_349553.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens Pf0-1]
gi|77384049|gb|ABA75562.1| tRNA-U16,U17-dihydrouridine synthase [Pseudomonas fluorescens
Pf0-1]
Length = 331
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRYFLRILSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELE I+NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 201 LKADFPELEFILNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--SAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAEHLLAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|422683870|ref|ZP_16742126.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331013200|gb|EGH93256.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 339
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 199/293 (67%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAYPQLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELSDFVGKVHEAGCESFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK DFP+LEI++NGGIKT + HL DGVMLGREAY NP+L+++ D + S P
Sbjct: 209 LKSDFPDLEIVLNGGIKTLDQCGEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDSTAP-- 266
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 -VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|84393138|ref|ZP_00991902.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
gi|84376190|gb|EAP93074.1| NifR3/Smm1 family protein [Vibrio splendidus 12B01]
Length = 334
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L++N +EHP+A Q+G + P L
Sbjct: 21 LDWTDRHCRYFHRLLSQQTLLYTEMITTGAILHGKGDFLEYNEQEHPLALQLGGSNPVDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ +I ITVK
Sbjct: 81 AACAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVSAMKEVTDIPITVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TVS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 141 TRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+KKDF +L I +NGG+ T ++ HL ++DGVM+GREAY +PF+++ D + + P
Sbjct: 201 IKKDFSDLVIAVNGGVTTLEQTKEHLQHLDGVMIGREAYHSPFILAEVDQQIFGLDTP-- 258
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI ++L+N ++ I+RHMLGL +++ G+ ++++ +S+
Sbjct: 259 -IKKRSQVVEEMYPYIERELSNG--ASLGHISRHMLGLFQSMPGARQWRRYISE 309
>gi|398897089|ref|ZP_10647955.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM55]
gi|398177376|gb|EJM65058.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM55]
Length = 331
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 198/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHDEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIK+ + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKADFPELEIILNGGIKSLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|53804232|ref|YP_114112.1| tRNA-dihydrouridine synthase A [Methylococcus capsulatus str. Bath]
gi|53757993|gb|AAU92284.1| TIM-barrel protein, yjbN family [Methylococcus capsulatus str.
Bath]
Length = 360
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 206/293 (70%), Gaps = 4/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R I+R++ LYTEM TT AIL G+++ L F+ EHP+A Q+G ++P+
Sbjct: 36 MDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRERLLGFHPAEHPLAIQLGGSDPEA 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AKI + G+DE+NLN GCPS RVQ G FGA LM +P V+DC++AM ++V + +TV
Sbjct: 96 LAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRAMCEAVSVPVTV 155
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + FV V+ AGCRTFIVHAR A+L+ L+PK+NR+ P L+Y+ V
Sbjct: 156 KTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKENRQTPPLRYDVVRR 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK + PEL I++NGGI+T E + HL++ DGVM+GR AY NP+L++ D Y + +
Sbjct: 216 LKSELPELAIVLNGGIQTLDEAERHLSWCDGVMIGRAAYHNPYLLAEADRRCYGH-SDVR 274
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR ++I + Y+R +L +K ++++TRH+LGL G ++++ +S+
Sbjct: 275 PRTREEVIEDFMPYVRNEL--SKGSRLHALTRHILGLYHATPGGKRWRRHISE 325
>gi|374336814|ref|YP_005093501.1| tRNA-dihydrouridine synthase A [Oceanimonas sp. GK1]
gi|372986501|gb|AEY02751.1| tRNA-dihydrouridine synthase A [Oceanimonas sp. GK1]
Length = 316
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 203/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R++ LYTEM TT AI+ K L +N EEHP+ Q+G N+P+ L
Sbjct: 2 LDWTDRHCRYFHRLMSRHAQLYTEMVTTGAIIHGKGDYLAYNDEEHPLVLQLGGNDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A A++ ++ GYDEINLN GCPS+RVQNG FGA LM P V++ + AM+ +V I +TVK
Sbjct: 62 AHCARLAEQRGYDEINLNVGCPSDRVQNGLFGACLMAHPHTVAEGVAAMKAAVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ V V+ AG IVHAR A+L+ L+PK+NR IP L Y+ VY L
Sbjct: 122 TRIGIDEQDSYEFLCTLVDKVAEAGVDALIVHARKAWLQGLSPKENRDIPPLDYDRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I +NGGIKT +E +HL +DGVMLGRE Y+NP+L++ D +++ +++
Sbjct: 182 KRDYPGLTIAVNGGIKTLEEARVHLANLDGVMLGREVYQNPYLLARVDAELFND--EHEA 239
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P+R +I +++ YI ++L + +ITRH LG+ + + G+ +++ LS+
Sbjct: 240 PSRHQVIRQLLPYIERELTQGTY--LGNITRHTLGIFQGMPGARAWRRHLSE 289
>gi|398974273|ref|ZP_10684977.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM25]
gi|398141817|gb|EJM30726.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM25]
Length = 331
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRYFLRILSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELE I+NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 201 LKADFPELEFILNGGIKTMEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--SAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAEHLLAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|90414453|ref|ZP_01222429.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
gi|90324458|gb|EAS41017.1| putative NifR3/Smm1 family protein [Photobacterium profundum 3TCK]
Length = 346
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L FN EE+P+A Q+G + P L
Sbjct: 33 LDWTDRHCRYFHRLLSDNALLYTEMVTTGAIIHGKGDFLTFNEEENPVALQLGGSNPVDL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ +MR+ V+I +TVK
Sbjct: 93 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEADLVALCVSSMREVVDIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+GTV+ +GC F VHAR A+LK L+PK+NR+IP L Y VY
Sbjct: 153 TRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKENREIPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIKT E++ HLN++DGVM+GREAY+NP+LM+ D +
Sbjct: 213 LKRDFPNLIMAINGGIKTFDEMEEHLNHMDGVMVGREAYQNPYLMAEVDQRLFGC--SKP 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R + M YI +QL N + ITRHMLGL + I G ++++ +S+
Sbjct: 271 IIKRREAAEAMFPYIERQLANG--SKLGHITRHMLGLFQGIPGGRQWRRYISE 321
>gi|350572018|ref|ZP_08940329.1| tRNA dihydrouridine synthase A [Neisseria wadsworthii 9715]
gi|349790787|gb|EGZ44687.1| tRNA dihydrouridine synthase A [Neisseria wadsworthii 9715]
Length = 336
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR++WLY EM A++ G+K L N E+P+A Q+G +EP
Sbjct: 16 LDWTDRHYRYMARQITRHTWLYGEMINAGAVIFGDKDRFLLHNECENPVALQLGGSEPAD 75
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GYDE+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+ID+TV
Sbjct: 76 LAKAAKAAEQYGYDEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVQIDVTV 135
Query: 120 KHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+++ C+T+IVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 136 KHRIGVDRQTEYQSVADFVGTLAAKTACKTYIVHARNAWLDGLSPKENRDVPPLKYDYVY 195
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP+LEIIINGGI T ++I HL ++DGVM+GRE Y NP +M +D +Y +
Sbjct: 196 RLKQEFPDLEIIINGGIHTNEQIAAHLAHVDGVMVGRECYHNPMIMRQWDSLFYGD---N 252
Query: 239 KIPTRID-IINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ P + ++ ++ Y ++Q+ + + + RH LGLM +KG+ ++++LS LL
Sbjct: 253 REPVAYEALVAKLQAYAQEQIAAGRGTILRHMARHYLGLMHGLKGARTWRRMLSDAALL 311
>gi|168748106|ref|ZP_02773128.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|168755216|ref|ZP_02780223.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|168766306|ref|ZP_02791313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|168774404|ref|ZP_02799411.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|168780459|ref|ZP_02805466.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|195935832|ref|ZP_03081214.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|208807897|ref|ZP_03250234.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208814168|ref|ZP_03255497.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208821033|ref|ZP_03261353.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209398005|ref|YP_002273589.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|419089390|ref|ZP_13634734.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|424118684|ref|ZP_17852494.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|424168129|ref|ZP_17887061.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|424259338|ref|ZP_17892600.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|424503340|ref|ZP_17950199.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|424509611|ref|ZP_17955952.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|424541244|ref|ZP_17984164.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|424547395|ref|ZP_17989696.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|424553593|ref|ZP_17995394.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|424572241|ref|ZP_18012750.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|424578400|ref|ZP_18018408.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|425141260|ref|ZP_18541617.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|425153050|ref|ZP_18552640.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|425332693|ref|ZP_18720480.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|425338873|ref|ZP_18726186.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|425345164|ref|ZP_18732028.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|425351002|ref|ZP_18737437.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|425357271|ref|ZP_18743309.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|425363226|ref|ZP_18748849.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|425369490|ref|ZP_18754541.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|429075959|ref|ZP_19139194.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444949988|ref|ZP_21268264.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444955588|ref|ZP_21273636.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444993687|ref|ZP_21310312.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|445010034|ref|ZP_21326245.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|445042795|ref|ZP_21358149.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
gi|452968715|ref|ZP_21966942.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4009]
gi|187769933|gb|EDU33777.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|188017450|gb|EDU55572.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|189001854|gb|EDU70840.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|189357455|gb|EDU75874.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|189364132|gb|EDU82551.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|208727698|gb|EDZ77299.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208735445|gb|EDZ84132.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208741156|gb|EDZ88838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209159405|gb|ACI36838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|377925314|gb|EHU89254.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|390673506|gb|EIN49747.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|390716238|gb|EIN89050.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|390717483|gb|EIN90268.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|390821894|gb|EIO88056.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|390827023|gb|EIO92814.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|390862031|gb|EIP24244.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|390865927|gb|EIP27919.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|390874494|gb|EIP35613.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|390890823|gb|EIP50476.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|390914088|gb|EIP72634.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|408242514|gb|EKI65094.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|408251313|gb|EKI73059.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|408255561|gb|EKI76996.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|408262137|gb|EKI83087.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|408270671|gb|EKI90852.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|408273472|gb|EKI93526.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|408281759|gb|EKJ01143.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|408575226|gb|EKK50910.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|408592775|gb|EKK67131.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|427324246|gb|EKW85725.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444553974|gb|ELV31563.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444558675|gb|ELV35946.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444602347|gb|ELV77089.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|444618090|gb|ELV92189.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|444650477|gb|ELW23305.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
Length = 345
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFLHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|149190495|ref|ZP_01868765.1| NifR3/Smm1 family protein [Vibrio shilonii AK1]
gi|148835619|gb|EDL52586.1| NifR3/Smm1 family protein [Vibrio shilonii AK1]
Length = 315
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 202/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L +N EEHP+A Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRLLSSQTLLYTEMVTTGAIIHGKGDFLAYNEEEHPVALQLGGSNPADL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM++ V++ +TVK
Sbjct: 62 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMKEVVDVPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV VS AGC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 122 TRIGIDDQDSYEFLTRFVSLVSEKAGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLPQY 238
+KKDFP L+I +NGG+KT +E HL ++DGVM+GREAY+NP++++ D L + + P
Sbjct: 182 IKKDFPHLQIAVNGGVKTLEESLEHLKHLDGVMIGREAYQNPYILAQVDQLIFGLDTP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI +QL N + I+RHM+GL + + G+ ++++ +S+
Sbjct: 240 -VKKRKQVVEEMYPYIERQLANGSY--LGHISRHMIGLFQAMPGARQWRRYISE 290
>gi|213970480|ref|ZP_03398608.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
T1]
gi|301383868|ref|ZP_07232286.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
Max13]
gi|302060592|ref|ZP_07252133.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
K40]
gi|213924798|gb|EEB58365.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
T1]
Length = 339
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 209 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSV--AP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRHAALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|416026370|ref|ZP_11569819.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320329184|gb|EFW85181.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 339
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCGSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|421662125|ref|ZP_16102293.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC110]
gi|408714928|gb|EKL60058.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC110]
Length = 334
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSSGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|428164490|gb|EKX33514.1| hypothetical protein GUITHDRAFT_81327 [Guillardia theta CCMP2712]
Length = 317
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/299 (50%), Positives = 201/299 (67%), Gaps = 12/299 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDR+ R F R I++ +W+Y+EM TT AIL GN+ L F +EHPIA Q+G ++P+
Sbjct: 23 MDWTDRYDRYFLRLISKNTWMYSEMVTTSAILNGNQDRLLGFFPQEHPIALQLGGSDPED 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK AK+ + +GYDEINLN GCPS RV G FGA LM +P LV DC+ AMR+SV++ +TV
Sbjct: 83 LAKCAKVGESYGYDEINLNVGCPSERVSTGSFGACLMAEPELVRDCVAAMRESVKVPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID ++SYD + FV TV GC+TFIVHAR A LK L+PK+NR+IP L+Y+ V+
Sbjct: 143 KHRIGIDHLDSYDLLCKFVSTVEEGGCKTFIVHARKAILKGLSPKENREIPPLQYHVVHQ 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNY------IDGVMLGREAYKNPF-LMSNFDLNYY 232
LK+DFP+LEIIINGGI + HL +DGVM+GR AY P+ ++S D+ Y
Sbjct: 203 LKQDFPQLEIIINGGITDLSQARAHLEQAGRAGGMDGVMIGRSAYHEPYKILSRADMEIY 262
Query: 233 SNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
++ + T II M+ +I +QL ++NSITRHM GL G F++ LS
Sbjct: 263 ND--EGGGVTYFQIIEEMLPFIDEQLKAG--VSLNSITRHMQGLFHGCPGGRAFRRHLS 317
>gi|254796068|ref|YP_003080905.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|254595468|gb|ACT74829.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
Length = 330
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFLHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 307
>gi|193076358|gb|ABO11015.2| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ATCC 17978]
Length = 334
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSTPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|375137087|ref|YP_004997737.1| tRNA-dihydrouridine synthase A [Acinetobacter calcoaceticus PHEA-2]
gi|325124532|gb|ADY84055.1| tRNA-dihydrouridine synthase A [Acinetobacter calcoaceticus PHEA-2]
Length = 334
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTYFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL K
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---K 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLA 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|302134770|ref|ZP_07260760.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 311
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 204/313 (65%), Gaps = 11/313 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 1 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 61 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 121 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 181 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSVA--P 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KP 293
+ +R + M YI + + N++ +TRHMLGL G+ +F+Q+LS +
Sbjct: 239 VISRHAALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLSVDIHKAEN 296
Query: 294 NLLTIDNFQFFLN 306
LL +D FL
Sbjct: 297 PLLLLDQAAKFLE 309
>gi|238752153|ref|ZP_04613635.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
gi|238709626|gb|EEQ01862.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
Length = 348
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKGDYLAYSEQDHPVALQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 94 AHCAKLAELRGYNEINLNVGCPSDRVQNGRFGACLMAEASLVADCIKAMRDAVTIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 214 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVDRELFD--PNAP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 272 VIDPVQAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 322
>gi|77166407|ref|YP_344932.1| tRNA-dihydrouridine synthase A [Nitrosococcus oceani ATCC 19707]
gi|254435191|ref|ZP_05048698.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
gi|76884721|gb|ABA59402.1| tRNA-U16,U17-dihydrouridine synthase [Nitrosococcus oceani ATCC
19707]
gi|207088302|gb|EDZ65574.1| TIM-barrel protein, yjbN family [Nitrosococcus oceani AFC27]
Length = 337
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRHCR F R I+ + LYTEM T A++ GN+ L ++ EHP+A Q+G + P++
Sbjct: 28 MEWTDRHCRYFLRLISHRALLYTEMVTAGALIHGNRARFLAYHKSEHPLALQLGGSHPEE 87
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + +G+DE+NLN GCPSNRVQ+G FGA LM +P LV++C+ AM + +I +TV
Sbjct: 88 LALCAQMAEDYGFDEVNLNVGCPSNRVQSGRFGACLMAEPELVAECVAAMAQATQIPVTV 147
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+ +SY+ + F+ TV+ AGCRTFI+HAR A+L+ L+PK+NR+ P L+Y+ V
Sbjct: 148 KTRIGIDEQDSYEALDHFISTVAQAGCRTFIIHARKAWLQGLSPKENREKPPLRYDVVRT 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP+L +IINGGI T +EI HL +DGVM+GR AY NP+L++ D N+Y + +
Sbjct: 208 IKQDFPQLTVIINGGITTLEEISEHLELLDGVMIGRAAYHNPYLLAQVDRNFYGDF--HP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR +II + Y+ +QL +N +TRH+LGL + G+ +++ LS+
Sbjct: 266 FLTRHEIIEAFLPYVAEQLVQGVY--LNHMTRHILGLFQGQPGARAWRRHLSE 316
>gi|169634371|ref|YP_001708107.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii SDF]
gi|169153163|emb|CAP02248.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii]
Length = 339
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 22 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 82 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 142 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 202 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 257 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 314
Query: 300 NFQ 302
+ +
Sbjct: 315 DVE 317
>gi|385854520|ref|YP_005901033.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240355]
gi|325203461|gb|ADY98914.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240355]
Length = 336
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 203/298 (68%), Gaps = 4/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGITVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y + +
Sbjct: 199 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGD--NH 256
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 257 APIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSNATLL 314
>gi|315497697|ref|YP_004086501.1| tim-barrel protein, yjbn family [Asticcacaulis excentricus CB 48]
gi|315415709|gb|ADU12350.1| TIM-barrel protein, yjbN family [Asticcacaulis excentricus CB 48]
Length = 343
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 193/292 (66%), Gaps = 6/292 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +T+ + LYTEM T++AI+ G+++ L F+ EHP+A Q+G +EP +
Sbjct: 15 MDWTDRHCRAFHRTLTKGALLYTEMVTSRAIINGDRQKLLGFSEVEHPVALQLGGSEPDE 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AKI + WGYDE+NLNCGCPS+RVQ+G FGA LM +P LV+DC++AM ++ + +TV
Sbjct: 75 LAACAKIAEDWGYDEVNLNCGCPSDRVQSGSFGACLMREPQLVADCMQAMGEATRLPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD + + V AG RTFIVHAR A+LK L+PK+NR IP L Y VY
Sbjct: 135 KCRIGVDDQDEETALFALVEACRQAGVRTFIVHARKAWLKGLSPKENRDIPPLNYELVYA 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ P+L I INGGI T +E + HL ++DGVMLGR AY P L+ D +S
Sbjct: 195 LKRAHPDLTISINGGIGTLQEAETHLKHVDGVMLGRAAYHEPALLGQVDRRIFSGEADVG 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ + Y++ QL ++ +ITRHMLGLM + G+ F++IL+
Sbjct: 255 ---PFEALEAYSPYVQAQLAAG--VHLPAITRHMLGLMHGLPGARAFRRILT 301
>gi|261365796|ref|ZP_05978679.1| tRNA dihydrouridine synthase A [Neisseria mucosa ATCC 25996]
gi|288565649|gb|EFC87209.1| tRNA dihydrouridine synthase A [Neisseria mucosa ATCC 25996]
Length = 334
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 209/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + AI+ G+K L FN E P+A Q+G ++P
Sbjct: 17 LDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D+V+I +TV
Sbjct: 77 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQDAVQIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 137 KHRIGVDRQIEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 196
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 197 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 253
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 254 RSPIEYADLVQRLYTYSQTQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 313
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 314 DNDGSLILEA 323
>gi|288957792|ref|YP_003448133.1| tRNA-dihydrouridine synthase A [Azospirillum sp. B510]
gi|288910100|dbj|BAI71589.1| tRNA-dihydrouridine synthase A [Azospirillum sp. B510]
Length = 335
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 199/293 (67%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ + LYTEM TT A+L G+++ L F+A EHP+A Q+G ++P
Sbjct: 12 MDWTDRHCRYFHRLLSASTLLYTEMVTTGAVLHGDRERLLGFDAAEHPVALQLGGSDPAD 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I ++WGYDE+NLN GCPS+RVQ+G FGA LM +P LV+ + AMRD+V I +TV
Sbjct: 72 LAACARIAEEWGYDEVNLNVGCPSDRVQSGRFGACLMAEPDLVARLVGAMRDAVAIPVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RI ID++ + + FV TVS+AGC FIVHAR A+LK L+PK+NR IP L+Y+ V+
Sbjct: 132 KSRIAIDEMEEWPTLDHFVRTVSAAGCTHFIVHARKAWLKGLSPKENRDIPPLRYDLVHR 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK + P L I INGGI+T E + HL +D VM+GR AY+ P+L+++ D P
Sbjct: 192 LKAENPHLTIAINGGIRTLDEAEEHLGKVDSVMIGRAAYETPYLLADADRRLTGGAPG-- 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P R +I M+ +I ++ +++ITRHMLGL + + G+ +++ +++
Sbjct: 250 -PDRHAVIAAMLPFIEARMALG--TPLSAITRHMLGLFQGLPGARAYRRHIAE 299
>gi|238913008|ref|ZP_04656845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 332
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQDECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|298158920|gb|EFH99980.1| tRNA dihydrouridine synthase A [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 339
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 200/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCGSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + S P
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDSTAP-- 266
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 -VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|37528192|ref|NP_931537.1| tRNA-dihydrouridine synthase A [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787629|emb|CAE16736.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 345
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 206/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++R + LYTEM TT AI+ K L ++ +EHPIA Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFHRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEQEHPIALQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AKI Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAM+D V + +TVK
Sbjct: 94 AHCAKIAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAELVADCVKAMQDVVNVPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVG-TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+ V +GC F +HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDEQDSYQFLCDFIDIVVQHSGCNIFTMHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+L I INGGIK+ +E HL ++DG+M+GREAY+NP +++ D + +++P
Sbjct: 214 LKKDFPQLTIAINGGIKSLEEAKQHLQHVDGIMIGREAYQNPSILAQVDHELFDASMP-- 271
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + ++ + YI Q+L +K + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 272 -VVNTVAVVKALYPYIEQEL--SKGTYLGHITRHILGIFQGIPGARQWRRHLSE 322
>gi|416015788|ref|ZP_11563254.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|320324818|gb|EFW80890.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. glycinea
str. B076]
Length = 339
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPGLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGKVQEAGCGSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDS--TAP 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|424061150|ref|ZP_17798640.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Ab33333]
gi|404666832|gb|EKB34762.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Ab33333]
Length = 334
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPRLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|421675807|ref|ZP_16115726.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC065]
gi|421692510|ref|ZP_16132161.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-116]
gi|421693893|ref|ZP_16133525.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-692]
gi|404559796|gb|EKA65047.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-116]
gi|404569732|gb|EKA74817.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-692]
gi|410381324|gb|EKP33890.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC065]
Length = 334
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|421615733|ref|ZP_16056753.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri KOS6]
gi|409782269|gb|EKN61834.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri KOS6]
Length = 311
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 201/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+ L + EHP+A Q+G + P +
Sbjct: 1 MDWTDRHCRFFLRQLSRHALLYTEMVTTGALLHGDAARFLRHDESEHPLALQLGGSMPNE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I++TV
Sbjct: 61 LAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVGIEVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P L+Y+
Sbjct: 121 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKQNREVPPLRYDIAAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LE+I+NGGIKT E HL DGVMLGREAY NP+L+++ D + S+ P
Sbjct: 181 LKQDFPDLELILNGGIKTLDECRAHLQTFDGVMLGREAYHNPYLLAHVDQALFGSDTP-- 238
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ R + M YI + L ++ +TRH+LGL + G+ +F+Q+LS
Sbjct: 239 -VIGRAQALRNMRPYIERHLAEGGA--MHHVTRHVLGLGQGFPGARRFRQLLS 288
>gi|407069817|ref|ZP_11100655.1| tRNA-dihydrouridine synthase A [Vibrio cyclitrophicus ZF14]
Length = 326
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L++N +EHP+A Q+G + P L
Sbjct: 13 LDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYNEQEHPLALQLGGSNPVDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ +I ITVK
Sbjct: 73 AACAKLAGERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCVSAMKEVTDIPITVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ FV TVS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 133 TRIGIDDQDSYEFLTKFVSTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+KKDF +L I +NGG+ T ++ HL ++DGVM+GREAY +PF+++ D + + P
Sbjct: 193 IKKDFSDLVIAVNGGVTTLEQTKEHLQHLDGVMIGREAYHSPFILAEVDQQIFGLDTP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI ++L+N ++ I+RHMLGL +++ G+ ++++ +S+
Sbjct: 251 -IKKRSQVVEEMYPYIERELSNG--ASLGHISRHMLGLFQSMPGARQWRRYISE 301
>gi|260556088|ref|ZP_05828307.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|260410143|gb|EEX03442.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
Length = 339
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 22 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 82 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 142 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 202 LKQERPHLTIEINGGIKTFTETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 257 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 314
Query: 300 NFQ 302
+ +
Sbjct: 315 DVE 317
>gi|239500729|ref|ZP_04660039.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB900]
gi|421677426|ref|ZP_16117318.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC111]
gi|410393182|gb|EKP45536.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC111]
Length = 334
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|403673221|ref|ZP_10935524.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. NCTC 10304]
gi|417544623|ref|ZP_12195709.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC032]
gi|421666353|ref|ZP_16106445.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC087]
gi|421670938|ref|ZP_16110920.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC099]
gi|445440975|ref|ZP_21441894.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-A-92]
gi|400382511|gb|EJP41189.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC032]
gi|410383235|gb|EKP35768.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC099]
gi|410388278|gb|EKP40717.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC087]
gi|444765529|gb|ELW89822.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-A-92]
Length = 338
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|417566774|ref|ZP_12217646.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC143]
gi|395552446|gb|EJG18454.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC143]
Length = 338
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAMLKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|417548818|ref|ZP_12199899.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-18]
gi|400389117|gb|EJP52189.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-18]
Length = 338
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|126640633|ref|YP_001083617.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ATCC 17978]
Length = 318
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 1 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSTPQE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 61 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 121 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 181 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 235
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 236 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 293
Query: 300 NFQ 302
+ +
Sbjct: 294 DVE 296
>gi|421651947|ref|ZP_16092312.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC0162]
gi|425747208|ref|ZP_18865218.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-348]
gi|408507068|gb|EKK08770.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC0162]
gi|425494096|gb|EKU60311.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-348]
Length = 338
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|226326586|ref|ZP_03802104.1| hypothetical protein PROPEN_00436 [Proteus penneri ATCC 35198]
gi|225205011|gb|EEG87365.1| tRNA dihydrouridine synthase A [Proteus penneri ATCC 35198]
Length = 344
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+++ + LYTEM TT AI+ K L ++ EEHP++ Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFFRQLSKNTLLYTEMVTTGAIIHGKGDYLKYSEEEHPVSLQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM LV++C+KAMRD V+I +TVK
Sbjct: 94 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGDAQLVANCVKAMRDVVDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS C TFI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDDQDSYEFLCDFIETVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL ++DGVM+GREAY+NP ++++ D + N Q
Sbjct: 214 LKRDFSHLTMAINGGIKSLEEAKEHLKHMDGVMVGREAYQNPSILAHVDHELFDN--QLP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I + + M YI ++L+ + +TRHMLG+ + I G+ ++++ LS+
Sbjct: 272 IADAVAAVRAMYPYIEKELSQGTY--LGHVTRHMLGIFQGIPGARQWRRHLSE 322
>gi|452955821|gb|EME61218.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii MSP4-16]
Length = 334
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFTETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|238794664|ref|ZP_04638270.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
gi|238726053|gb|EEQ17601.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
Length = 343
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEAELVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVADRGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + +N P
Sbjct: 208 LKRDFPTLTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVDRELFDANAP-- 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 -VVDSVKAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|340001601|ref|YP_004732485.1| hypothetical protein SBG_3688 [Salmonella bongori NCTC 12419]
gi|339514963|emb|CCC32734.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 381
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 70 LDWTDRHCRYFLRLLSHQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 129
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+D IKAMRD V I +TVK
Sbjct: 130 AHCAKLAEARGYDEINLNVGCPSDRVQNGLFGACLMGNAQLVADSIKAMRDVVSIPVTVK 189
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 190 TRIGIDDQDSYAFLCDFINTVSGRGECETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 249
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ E HL Y+DGVM+GREAY+NP +++ D +
Sbjct: 250 LKRDFPHLTLSINGGIKSLAEAKEHLKYMDGVMVGREAYQNPGILAAVDREIFGADTAEV 309
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 310 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 358
>gi|423690662|ref|ZP_17665182.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens SS101]
gi|387999486|gb|EIK60815.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens SS101]
Length = 328
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ L N EHP+A Q+G + P
Sbjct: 18 MDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAEHPLALQLGGSVPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+V I +TV
Sbjct: 78 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 138 KHRIGINGRDSYAQLCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI +NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 198 LKRDFPELEINLNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 256 VITRAEALAQLRPYIAEHLATGGA--MHHITRHVLGLGTGFPGARKFRQLLS 305
>gi|168231239|ref|ZP_02656297.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470364|ref|ZP_03076348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456728|gb|EDX45567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205334267|gb|EDZ21031.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 332
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSCQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|443327372|ref|ZP_21055998.1| tRNA dihydrouridine synthase A [Xenococcus sp. PCC 7305]
gi|442792994|gb|ELS02455.1| tRNA dihydrouridine synthase A [Xenococcus sp. PCC 7305]
Length = 311
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R RQIT+Y+ LYTEM TT AI+ G+++ L F+ EE P+ Q+G ++P +
Sbjct: 1 MDRTDRHYRYLMRQITKYTLLYTEMVTTPAIIHGDREKLLGFSPEEKPLVLQLGGDQPSE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK+ Q WGYD +NLN GCPS+RVQ+G FGA LM KP LV+ I AM+ +V I +TV
Sbjct: 61 LAECAKVAQDWGYDAVNLNVGCPSSRVQSGNFGACLMAKPQLVAAAISAMQKAVTIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD + Y+ + +FV VS AGCR F VHAR A+LK L+PK+NR +P L+Y VY
Sbjct: 121 KHRIGIDDRDRYEDMAEFVRIVSEAGCRHFTVHARKAWLKGLSPKENRNVPPLRYEDVYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L I INGGI K++ L +D VM+GR AY NP+L + D +Y + Q
Sbjct: 181 LKREFPHLFIEINGGIVELKQVTECLKSVDAVMIGRAAYDNPYLFATVDQEFYDS--QAA 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
IP R DI+ M+ YI ++ +NSITRHML L G+ +K+ +S+
Sbjct: 239 IPRRQDIVEAMLPYIDHWMSRG--GRLNSITRHMLQLFARQPGTKAWKRYISQ 289
>gi|215484648|ref|YP_002326883.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB307-0294]
gi|213987851|gb|ACJ58150.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB307-0294]
Length = 334
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNIGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|62182692|ref|YP_219109.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168821313|ref|ZP_02833313.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224586008|ref|YP_002639807.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375117045|ref|ZP_09762215.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|409247917|ref|YP_006888609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|62130325|gb|AAX68028.1| putative TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205342153|gb|EDZ28917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224470536|gb|ACN48366.1| hypothetical protein SPC_4304 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088651|emb|CBY98409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322717191|gb|EFZ08762.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 332
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++ + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSCQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>gi|169797208|ref|YP_001715001.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AYE]
gi|213155999|ref|YP_002318044.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB0057]
gi|301346115|ref|ZP_07226856.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB056]
gi|301511827|ref|ZP_07237064.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB058]
gi|301594892|ref|ZP_07239900.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB059]
gi|332850773|ref|ZP_08433005.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii 6013150]
gi|332866157|ref|ZP_08436872.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii 6013113]
gi|417572649|ref|ZP_12223503.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Canada
BC-5]
gi|421620686|ref|ZP_16061615.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC074]
gi|421642920|ref|ZP_16083431.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-235]
gi|421649134|ref|ZP_16089529.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-251]
gi|421657808|ref|ZP_16098056.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-83]
gi|421698019|ref|ZP_16137563.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-58]
gi|421798224|ref|ZP_16234249.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-21]
gi|421798646|ref|ZP_16234662.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Canada BC1]
gi|169150135|emb|CAM88029.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AYE]
gi|213055159|gb|ACJ40061.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB0057]
gi|332730432|gb|EGJ61749.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii 6013150]
gi|332734798|gb|EGJ65892.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii 6013113]
gi|400208217|gb|EJO39187.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Canada
BC-5]
gi|404573065|gb|EKA78105.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-58]
gi|408511486|gb|EKK13134.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-235]
gi|408513907|gb|EKK15519.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-251]
gi|408699963|gb|EKL45435.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC074]
gi|408711597|gb|EKL56802.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-83]
gi|410394810|gb|EKP47134.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-21]
gi|410412087|gb|EKP63947.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Canada BC1]
Length = 338
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNIGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|71736634|ref|YP_274126.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557187|gb|AAZ36398.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 339
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACSRLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGNVQEAGCGSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEI++NGGIKT ++ HL DGVMLGREAY NP+L+++ D + +
Sbjct: 209 LKSDFPDLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDS--TAL 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R D + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRYDALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|15676263|ref|NP_273397.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis MC58]
gi|385852538|ref|YP_005899052.1| tRNA dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|416195227|ref|ZP_11617632.1| tRNA dihydrouridine synthase A [Neisseria meningitidis CU385]
gi|427827838|ref|ZP_18994861.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|433464325|ref|ZP_20421818.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM422]
gi|433487530|ref|ZP_20444708.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M13255]
gi|433489705|ref|ZP_20446843.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM418]
gi|433504344|ref|ZP_20461288.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9506]
gi|433506438|ref|ZP_20463356.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9757]
gi|433508537|ref|ZP_20465421.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 12888]
gi|433510601|ref|ZP_20467443.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 4119]
gi|7225569|gb|AAF40791.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984353|gb|EFV63327.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|325140997|gb|EGC63503.1| tRNA dihydrouridine synthase A [Neisseria meningitidis CU385]
gi|325199542|gb|ADY94997.1| tRNA dihydrouridine synthase A [Neisseria meningitidis H44/76]
gi|389604991|emb|CCA43916.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha522]
gi|432205743|gb|ELK61764.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM422]
gi|432225803|gb|ELK81542.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M13255]
gi|432230180|gb|ELK85858.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM418]
gi|432243241|gb|ELK98755.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9506]
gi|432244071|gb|ELK99572.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 9757]
gi|432249561|gb|ELL04965.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 12888]
gi|432250177|gb|ELL05574.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 4119]
Length = 336
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVKIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|421541689|ref|ZP_15987805.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM255]
gi|402319537|gb|EJU55045.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM255]
Length = 336
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGITVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDSSLILEA 325
>gi|330808532|ref|YP_004352994.1| tRNA-dihydrouridine synthase A [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376640|gb|AEA67990.1| tRNA-dihydrouridine synthase A [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 312
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 2 MDWTDAHCRFFLRILSKHALLYTEMVTTGALLNGDHERFLRHHESEHPLALQLGGSVPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPHLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + +FVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 122 KHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 182 LKADFPELEIVLNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI L ++ ITRH+LGL G+ +F+Q+LS
Sbjct: 240 VITRAEALAQLRPYIADHLAAGGA--MHHITRHVLGLGTGFPGARRFRQLLS 289
>gi|378951859|ref|YP_005209347.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens F113]
gi|359761873|gb|AEV63952.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens F113]
Length = 312
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 2 MDWTDAHCRFFLRILSKHALLYTEMVTTGALLNGDHERFLRHHEAEHPLALQLGGSVPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 62 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRDAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + +FVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 122 KHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 182 LKADFPELEIVLNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI L ++ ITRH+LGL G+ +F+Q+LS
Sbjct: 240 VITRAEALAQLRPYIADHLAAGGA--MHHITRHVLGLGTGFPGARRFRQLLS 289
>gi|298369820|ref|ZP_06981136.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281280|gb|EFI22769.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
Length = 345
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 208/310 (67%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQIT +WLY+EM AI+ G+K L FN E P+A Q+G +EP
Sbjct: 28 LDWTDRHFRYMARQITENAWLYSEMINAGAIIYGDKDRFLMFNEGEQPVALQLGGSEPAD 87
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+EINLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+I +TV
Sbjct: 88 LAKAAKAAEEYGYNEINLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVDIPVTV 147
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y +FVGT+ CRTFIVHARNA+L L+PK+NR++P LKY++VY
Sbjct: 148 KHRIGVDRQTEYGVAAEFVGTLYEKTACRTFIVHARNAWLDGLSPKENREVPPLKYDYVY 207
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK+DFPELEIIINGGI T ++I HL ++DGVM+GREAY NP +M ++D +Y +
Sbjct: 208 RLKQDFPELEIIINGGITTNEQISEHLKHVDGVMVGREAYHNPMIMRDWDRLFYG---ES 264
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ ++ Y R Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 265 SPPVEYADLVLKLYEYSRAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDAALLK 324
Query: 298 IDNFQFFLNT 307
++ L+
Sbjct: 325 NNDGSLILDA 334
>gi|315125488|ref|YP_004067491.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. SM9913]
gi|315014001|gb|ADT67339.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. SM9913]
Length = 310
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 62 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMKSEVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L Y VY L
Sbjct: 122 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y + +
Sbjct: 182 KKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDAANTQ- 240
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR D++ M YI +++ N + RHMLG+ + G+ F++ LS+
Sbjct: 241 -TRHDVVRSMYDYIEEEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 289
>gi|229589108|ref|YP_002871227.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens SBW25]
gi|229360974|emb|CAY47834.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens SBW25]
Length = 336
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 201/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ L N EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHDRFLRHNEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV++C+KAMRD+V I +TV
Sbjct: 86 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVAECVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAQLCDFVGTVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEI++NGGIKT ++ HL DGVMLGREAY NP++++ D + + +
Sbjct: 206 LKQDFPELEIVLNGGIKTLEQCHEHLQTFDGVMLGREAYHNPYVLAEVDQQLFGS--EAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L + +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VISRAEALVQLRPYIAEHLASG--GSMHHITRHILGLGTGFPGARKFRQLLS 313
>gi|398993654|ref|ZP_10696596.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM21]
gi|398134411|gb|EJM23574.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM21]
Length = 331
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD+HCR F R +++ + LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 21 MDWTDKHCRFFLRLLSKNALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKTDFPDLEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VITRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|421537441|ref|ZP_15983628.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93003]
gi|402319373|gb|EJU54883.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93003]
Length = 319
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 205/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 2 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 62 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGITVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 122 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 181
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 182 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 238
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 239 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 298
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 299 DNDGSLILEA 308
>gi|423696320|ref|ZP_17670810.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q8r1-96]
gi|388003236|gb|EIK64563.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q8r1-96]
Length = 336
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 26 MDWTDAHCRFFLRILSKHALLYTEMVTTGALLNGDHERFLRHHESEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPGLVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + +FVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKADFPELEIVLNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI L ++ ITRH+LGL G+ +F+Q+LS
Sbjct: 264 VITRAEALAQLRPYIADHLAAGGA--MHHITRHVLGLGTGFPGARRFRQLLS 313
>gi|269213818|ref|ZP_05982915.2| tRNA dihydrouridine synthase A [Neisseria cinerea ATCC 14685]
gi|269145448|gb|EEZ71866.1| tRNA dihydrouridine synthase A [Neisseria cinerea ATCC 14685]
Length = 319
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 207/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM + AI+ G+K L FN E P+A Q+G ++P
Sbjct: 2 LDWTDRHYRYLARQITRNTWLYSEMVNSGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + +LV+DC+ AM+D+V I +TV
Sbjct: 62 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVMLVADCLNAMQDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 122 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 181
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP+LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 182 RLKQEFPDLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 238
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 239 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 298
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 299 DNDGSLILEA 308
>gi|260549038|ref|ZP_05823259.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. RUH2624]
gi|260407766|gb|EEX01238.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. RUH2624]
Length = 338
Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRMAQGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|304313001|ref|YP_003812599.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
gi|301798734|emb|CBL46967.1| tRNA-dihydrouridine synthase A [gamma proteobacterium HdN1]
Length = 357
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 202/295 (68%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI++ + LYTEM TT A+L N LD++ +EHP+A Q+G N+P
Sbjct: 48 LDWTDRHARYMLRQISQRTLLYTEMVTTGALLHTNPARWLDYHHDEHPLALQLGGNQPHA 107
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ K+ +W YDE+NLN GCPS+RVQ G FGA LM P +V+DC+KAM+D+ + ITV
Sbjct: 108 LAQCVKLAAQWQYDEVNLNVGCPSDRVQEGAFGACLMATPNIVADCVKAMQDASNLPITV 167
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD + ++DF+ TV +AGC+TFIVHAR A+LK L+PK+NR+IP L Y V+
Sbjct: 168 KCRIGIDDQDEEQGLQDFIETVQAAGCKTFIVHARKAWLKGLSPKENREIPPLNYPRVHR 227
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
LKKDFP+LE+IINGG KT E L ++DGVM+GREAY NP ++++ D + +N P
Sbjct: 228 LKKDFPDLELIINGGFKTLDECAEQLAHLDGVMIGREAYHNPMVLADADQRIFGATNAPI 287
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R +I++M Y +Q + + ITRHMLGL+ I G +++++LS+
Sbjct: 288 ----CREALIHKMHAYAERQYRDGVA--VKHITRHMLGLLHGIPGGRRWRRVLSE 336
>gi|83645166|ref|YP_433601.1| tRNA-dihydrouridine synthase A [Hahella chejuensis KCTC 2396]
gi|83633209|gb|ABC29176.1| tRNA-dihydrouridine synthase [Hahella chejuensis KCTC 2396]
Length = 349
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 205/311 (65%), Gaps = 5/311 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R R ++R+++LYTEM TT AI+ G++ LDFNAEEHPIA Q+G + P +
Sbjct: 26 MDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDFNAEEHPIAVQLGGSNPDE 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
L + AKI + WGYDEINLN GCPS+RVQN GA LM P V++C+ AM +V I +TV
Sbjct: 86 LKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAECVAAMCSAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD +S +F+ +FV TV +AGC TFI+HAR A LK L+PK+NR+IP L Y Y
Sbjct: 146 KHRIGIDDQDSEEFLLNFVRTVKAAGCSTFIIHARKAILKGLSPKENREIPPLIYPRAYL 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+ FPELEIIINGGIKT E + HL +DGVM+GREAY+ P+++++ D + P
Sbjct: 206 IKQTFPELEIIINGGIKTMDESESHLQEVDGVMIGREAYQRPWMLADVDHRLFHCPPPSF 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
T DI + + YI + N + + RH LGL KG +F++ LS+ +
Sbjct: 266 SAT--DIGYQFLEYIERNYQNGVA--VWHMARHALGLFHGQKGGKQFRRYLSENAIKRTA 321
Query: 300 NFQFFLNTLNI 310
+ F + L+I
Sbjct: 322 SPTVFRDALDI 332
>gi|421808068|ref|ZP_16243925.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC035]
gi|410416247|gb|EKP68022.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC035]
Length = 338
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVK 316
>gi|304386595|ref|ZP_07368883.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ATCC 13091]
gi|304339424|gb|EFM05496.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ATCC 13091]
Length = 348
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 31 LDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 91 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 151 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 210
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 211 RLKQEFPELEIIINGGITANEAIAGHLQHVDGVMVGREAYHNPIVMREWDRLFYGDT--- 267
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 268 RSPIEYTDLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 327
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 328 DNDGSLILEA 337
>gi|445433865|ref|ZP_21439807.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC021]
gi|444757042|gb|ELW81574.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC021]
Length = 338
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTYFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQTHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|54310405|ref|YP_131425.1| tRNA-dihydrouridine synthase A [Photobacterium profundum SS9]
gi|46914846|emb|CAG21623.1| putative NifR3/Smm1 family protein [Photobacterium profundum SS9]
Length = 346
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ K L FN EE+P+A Q+G + P L
Sbjct: 33 LDWTDRHCRYFHRLLSDNALLYTEMVTTGAIIHGKGDFLTFNEEENPVALQLGGSNPVDL 92
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+ C+ +MR+ V+I +TVK
Sbjct: 93 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEADLVALCVSSMREVVDIPVTVK 152
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+GTV+ +GC F VHAR A+LK L+PK+NR+IP L Y VY
Sbjct: 153 TRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKENREIPPLDYPRVYQ 212
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP + + INGGIKT E++ HL ++DGVM+GREAY+NP+LM+ D + +
Sbjct: 213 LKRDFPNIIMAINGGIKTFDEMEEHLKHMDGVMVGREAYQNPYLMAEVDQRLFGS--SKP 270
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R + M YI +QL N + ITRHMLGL + I G ++++ +S+
Sbjct: 271 IIKRREAAEAMFPYIERQLANG--SKLGHITRHMLGLFQGIPGGRQWRRYISE 321
>gi|339493648|ref|YP_004713941.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338801020|gb|AEJ04852.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 322
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ+++++ LYTEM TT A+L G+ L ++ EHP+A Q+G + P
Sbjct: 12 MDWTDRHCRFFLRQLSKHALLYTEMVTTGALLHGDTARFLRYDESEHPLALQLGGSVPGD 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +++TV
Sbjct: 72 LAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVGVEVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PKQNR++P L+Y+
Sbjct: 132 KHRIGINGRDSYSQLCDFVGQVREAGCRSFTVHARIAILEGLSPKQNREVPPLRYDVAAQ 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEII+NGGIKT +E +L DGVMLGREAY NP+L++ D + + SN P
Sbjct: 192 LKRDFPDLEIILNGGIKTLEECREYLLTFDGVMLGREAYHNPYLLAQVDSSLFGSNAP-- 249
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + L ++ +TRH+LGL + G+ +F+Q+LS
Sbjct: 250 -VISRAQALRNMRPYIERHLAEGGA--MHHVTRHVLGLGQGFPGARRFRQLLS 299
>gi|424056955|ref|ZP_17794472.1| tRNA dihydrouridine synthase A [Acinetobacter nosocomialis Ab22222]
gi|425742184|ref|ZP_18860305.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-487]
gi|407440488|gb|EKF47005.1| tRNA dihydrouridine synthase A [Acinetobacter nosocomialis Ab22222]
gi|425488785|gb|EKU55112.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-487]
Length = 338
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRQLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|421554100|ref|ZP_16000050.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 98008]
gi|402333727|gb|EJU69026.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 98008]
Length = 336
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGITVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDSSLILEA 325
>gi|323495575|ref|ZP_08100649.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
gi|323319456|gb|EGA72393.1| tRNA-dihydrouridine synthase A [Vibrio sinaloensis DSM 21326]
Length = 333
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 200/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 20 LDWTDRHCRYFHRLLTNETLLYTEMVTTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ +MR+ V+I +TVK
Sbjct: 80 ATCAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVASMREVVDIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV V+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 140 TRIGIDDQDSYEFLTDFVSIVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
LKKDF L I +NGG+KT ++ +HL ++DGVM+GREAY+NP+L++ D + + P
Sbjct: 200 LKKDFSHLNIAVNGGVKTLEDSLVHLEHLDGVMVGREAYQNPYLLAQVDQQIFGLDKP-- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R ++ M YI QL +K + ITRHM+GL + + G+ ++++ +S+
Sbjct: 258 -VKKRSQVVEEMYPYIEAQL--SKGAYLGHITRHMIGLFQAMPGARQWRRYISE 308
>gi|170077369|ref|YP_001734007.1| dihydrouridine synthase A [Synechococcus sp. PCC 7002]
gi|169885038|gb|ACA98751.1| Dihydrouridine synthase A [Synechococcus sp. PCC 7002]
Length = 344
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R R+ITR + LYTEM TTQAI+ G++ LDF+A EHPI+ Q+G + PK+
Sbjct: 20 MDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDAAEHPISLQLGGDNPKE 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK+ + WGYDEINLN GCPS RVQ G FGA LMT+P LV+DC+ AM+ +V I +TV
Sbjct: 80 LAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVADCVAAMQGAVNIPVTV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D+ +SY + F+ VS+ GC F VHAR A+L+ L+PK+NR +P L+Y VY
Sbjct: 140 KHRIGVDEQDSYADLCRFIEIVSATGCDRFSVHARKAWLQGLSPKENRTVPPLRYADVYR 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGI T + I HL +D VM+GR AY NP+L + D + Y Q K
Sbjct: 200 LKQDFPHLWIEINGGITTLEHIQTHLTQVDAVMVGRAAYDNPYLFATVDRDIYGEAIQPK 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I+ M+ YI ++ +K ++SI+RHML L G+ +K+ +++
Sbjct: 260 --SRHEIVEEMLPYI-ERATKAGVK-LHSISRHMLSLFLGQPGTKAWKRFITE 308
>gi|374314399|ref|YP_005060828.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
gi|363988625|gb|AEW44816.1| tRNA-dihydrouridine synthase A [Serratia symbiotica str. 'Cinara
cedri']
Length = 328
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 205/311 (65%), Gaps = 5/311 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
+N TDRHCR FHR +T+ + LYTEM TT AI+ +KK L +N EEHP++ Q+G ++ L
Sbjct: 20 LNWTDRHCRYFHRLLTKETLLYTEMITTGAIIHSKKDYLAYNEEEHPVSLQLGGSDLTAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GYDEINLN GCPSNRVQNG FGA LM K LV+D IKAM D+V I +T+K
Sbjct: 80 AFCAKLAEQRGYDEINLNVGCPSNRVQNGIFGACLMKKATLVADSIKAMNDAVSIPVTLK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS+ G C F +HAR A L LNPKQNR+IP L Y VY
Sbjct: 140 TRIGIDDRDSYEFLCDFIYTVSNQGQCSMFTLHARKALLSGLNPKQNREIPPLDYLRVYR 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L IIINGGI T +E HL ++DGVM+GR AY+NP ++ D +
Sbjct: 200 LKQDFPALNIIINGGINTLEESSQHLQHLDGVMMGRAAYQNPSILLEVDSRLFGM--HSV 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+ +I II M YI ++L++ +++ ITRH+LG + GS ++++ LS+
Sbjct: 258 VKKKISIIESMYPYIERELSHG--THLSHITRHILGFFQGDHGSRQWRRHLSENAYKPGA 315
Query: 300 NFQFFLNTLNI 310
Q LN+
Sbjct: 316 GIQVMEQALNL 326
>gi|85060114|ref|YP_455816.1| tRNA-dihydrouridine synthase A [Sodalis glossinidius str.
'morsitans']
gi|84780634|dbj|BAE75411.1| conserced hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 343
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD HCR F RQ++R + LYTEM TT A+L K L ++ EHP+A Q+G +EP L
Sbjct: 34 LDWTDSHCRFFLRQLSRRALLYTEMVTTGALLFGKGDYLAYHDAEHPLALQLGGSEPDAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + V+ CI AMR++V + ITVK
Sbjct: 94 ARCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEKDRVAACIAAMREAVTLPITVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ +F+ TV++ GC TFI+HAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 154 TRIGIDEQDSYAFLCEFIDTVATHGGCETFIIHARKAWLNGLSPKENREIPPLDYDRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L +++NGGIKT + HL +DGVM+GREAY+NP +++ D + +
Sbjct: 214 LKRDFPALRLMLNGGIKTLHDAREHLQKLDGVMMGREAYQNPGILARVDSELFGDAD--T 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P + +I+ M+ YI ++L+ + ITRHMLGL + + G+ ++++ LS+
Sbjct: 272 LPNQAAVIDVMLPYIERELSQGAA--LGHITRHMLGLFQGMPGARQWRRYLSE 322
>gi|421625691|ref|ZP_16066537.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC098]
gi|408697785|gb|EKL43291.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC098]
Length = 334
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLIIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|421564557|ref|ZP_16010355.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
gi|402345825|gb|EJU80930.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3081]
Length = 336
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 205/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|261401825|ref|ZP_05987950.1| tRNA dihydrouridine synthase A [Neisseria lactamica ATCC 23970]
gi|269208032|gb|EEZ74487.1| tRNA dihydrouridine synthase A [Neisseria lactamica ATCC 23970]
Length = 336
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+++V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQEAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAMLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|268597171|ref|ZP_06131338.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268682834|ref|ZP_06149696.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID332]
gi|268550959|gb|EEZ45978.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268623118|gb|EEZ55518.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID332]
Length = 338
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 203/299 (67%), Gaps = 6/299 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 21 LDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM D+V I +TV
Sbjct: 81 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMHDAVGIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 141 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 200
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 201 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGD---N 257
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 258 RAPIEYADLVQRLYTYSQVQIQAGRGTILRHIVRHSLGLMHGLKGAQTWRRMLSDATLL 316
>gi|438047594|ref|ZP_20856075.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435319672|gb|ELO92477.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
Length = 304
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/288 (50%), Positives = 195/288 (67%), Gaps = 5/288 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGRGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFK 287
P + ++ M YI ++L+ + ITRHMLGL + I G+ +++
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWR 304
>gi|161505294|ref|YP_001572406.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866641|gb|ABX23264.1| hypothetical protein SARI_03435 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 345
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 34 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPLALQLGGSDPAQL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 94 THCAKLAEVRGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 154 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 214 LKRDFPHLNMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 273
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 274 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 322
>gi|407783743|ref|ZP_11130938.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
gi|407200178|gb|EKE70189.1| tRNA-dihydrouridine synthase A [Oceanibaculum indicum P24]
Length = 333
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F R I+R + LYTEM TT A+L G+++ L F+A EHP+A Q+G +EP
Sbjct: 15 MDWTDRHDRFFLRLISRQALLYTEMVTTGAVLHGDRQRLLRFDAAEHPVACQLGGSEPDD 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++++ +GYDE+NLNCGCPS+RVQ G FGA LM +P V+ +KAM + + +TV
Sbjct: 75 LARAAEVVEGFGYDEVNLNCGCPSDRVQKGRFGACLMAEPETVAAGVKAMIAATSLPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D++ Y ++ F+ TV+ AGCR+FIVHAR A+LK L+PK+NR+IP L+Y VY
Sbjct: 135 KSRIGVDEMEDYADLKRFIETVADAGCRSFIVHARKAWLKGLSPKENREIPPLRYELVYR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ PEL I++NGG+ T + HL ++DGVM+GR AY+ P+++++ D ++
Sbjct: 195 LKQELPELTIVLNGGVATLDQAAAHLAHVDGVMIGRAAYQEPYMLADADRRFFGA--SAP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P+R ++ + Y+ ++L + +TRH+LGL + G+ F++ L++
Sbjct: 253 APSRRQVLEAFLPYVERELAQG--TPLAHMTRHILGLYNGLPGARAFRRHLAE 303
>gi|445462168|ref|ZP_21449033.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC047]
gi|444770677|gb|ELW94826.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC047]
Length = 338
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSIPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|325576762|ref|ZP_08147377.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
gi|325160968|gb|EGC73086.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae ATCC
33392]
Length = 328
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++ + LYTEM T AI+ K LDF+ +E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI M+ V I +TVK
Sbjct: 79 KHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVAECIAEMQRVVNIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY F+ DF+ V AGC+ FIVHAR A+L L+PK+NR+IP L Y+ VY L
Sbjct: 139 TRIGIDDLDSYQFLCDFIKKVHHAGCQEFIVHARKAWLSGLSPKENREIPPLDYDRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP+L I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D + I
Sbjct: 199 KKDFPQLTIAINGGIKTIEEMKHHLQFVDGVMVGREAYQNPSLLGYVDQMLFD--ANADI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + M YI +QL+ +N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTPKQAVEAMFPYIEKQLSQGVY--LNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|154251505|ref|YP_001412329.1| tRNA-dihydrouridine synthase A [Parvibaculum lavamentivorans DS-1]
gi|154155455|gb|ABS62672.1| TIM-barrel protein, yjbN family [Parvibaculum lavamentivorans DS-1]
Length = 335
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F R ITR S LYTEM TT AIL G ++ L F+ EHP+A Q+G +EP
Sbjct: 14 MDWTDRHDRYFLRLITRRSLLYTEMVTTGAILHGPRERLLKFDLSEHPVAVQLGGSEPAD 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SA+I +GYDEINLN GCPS+RVQ+G FGA LM +P LV+ C++AM+++V + +TV
Sbjct: 74 LAESARIAADFGYDEINLNVGCPSDRVQSGRFGACLMREPDLVARCVEAMKNAVSVPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D+ + + V AGC T IVHAR A+L+ L+PK+NR +P L Y VY
Sbjct: 134 KCRIGVDEQEPEEALPAMAKAVRGAGCETLIVHARKAWLEGLSPKENRDVPPLDYPLVYR 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ P++EIIINGGI T E + HL ++DGVMLGR AY++P++++ D +Y + +
Sbjct: 194 LKQAMPDMEIIINGGIATLDEAEAHLAHVDGVMLGRAAYQHPYILAEADRRFYGD--GHD 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P+R +++ +LY+++++ + +++++TRH+LGL + G+ F++ +S+
Sbjct: 252 VPSRHEVLEGFVLYVQEEMAHG--THLHAMTRHILGLFQGCPGARAFRRHISE 302
>gi|326795079|ref|YP_004312899.1| yjbN family TIM-barrel protein [Marinomonas mediterranea MMB-1]
gi|326545843|gb|ADZ91063.1| TIM-barrel protein, yjbN family [Marinomonas mediterranea MMB-1]
Length = 348
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 206/312 (66%), Gaps = 6/312 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
++ T R R+F R +T+++ LYTEM TT AIL N + L ++ EHPIA Q+G ++
Sbjct: 30 LDWTTRDYRVFARTLTKHTLLYTEMVTTGAILQGDNPERFLKYDDCEHPIALQLGGSDAV 89
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
LA AKI + + YDE+NLN GCPS+RVQN GA LM P V+D +KAM+D+ I +T
Sbjct: 90 ALATCAKIAETFHYDEVNLNVGCPSDRVQNSLIGACLMAYPDKVADILKAMQDATSIPVT 149
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
+KHRIG+DD Y +RDFVGTV+ G +TFIVHARNA L+ L+PK+NR+IP LKY++VY
Sbjct: 150 IKHRIGLDDQQEYSILRDFVGTVADTGIQTFIVHARNAILQGLSPKENREIPPLKYDYVY 209
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LKKDFP+LEIIINGGIKT E HL+++DGVM+GREAY NP+++S+ D Y
Sbjct: 210 QLKKDFPDLEIIINGGIKTIDETISHLDHVDGVMMGREAYNNPWILSDIDTKVYG--ASA 267
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+ R + + R + Y+ +QL K + + +TRH+LG+ + G +F++ LS+ T
Sbjct: 268 CVNNRFEALERFVPYVEEQL--AKGERLMHMTRHILGIFHGLPGGKQFRRYLSENGHKTD 325
Query: 299 DNFQFFLNTLNI 310
L + I
Sbjct: 326 AKIDILLEAIEI 337
>gi|254494393|ref|ZP_05107564.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268595490|ref|ZP_06129657.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268599350|ref|ZP_06133517.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268602043|ref|ZP_06136210.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID18]
gi|268604377|ref|ZP_06138544.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268684995|ref|ZP_06151857.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268687257|ref|ZP_06154119.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
gi|226513433|gb|EEH62778.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268548879|gb|EEZ44297.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268583481|gb|EEZ48157.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268586174|gb|EEZ50850.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID18]
gi|268588508|gb|EEZ53184.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268625279|gb|EEZ57679.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268627541|gb|EEZ59941.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
Length = 338
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 203/299 (67%), Gaps = 6/299 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 21 LDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM D+V I +TV
Sbjct: 81 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMHDAVGIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 141 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 200
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 201 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGD---N 257
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 258 RAPIEYADLVQRLYTYSQVQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLL 316
>gi|445400051|ref|ZP_21429701.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-57]
gi|444783433|gb|ELX07292.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-57]
Length = 338
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLIIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|293610334|ref|ZP_06692635.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427424196|ref|ZP_18914330.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-136]
gi|292827566|gb|EFF85930.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425698936|gb|EKU68558.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-136]
Length = 338
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHTMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTYFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|398921337|ref|ZP_10659783.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM49]
gi|398166020|gb|EJM54127.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM49]
Length = 331
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ L N EHP+A Q+G + P
Sbjct: 21 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHDRFLRHNEAEHPLALQLGGSVPLD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 81 LAACARMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMRDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFV TV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 141 KHRIGINGRDSYEELCDFVDTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT + HL DGVMLGREAY NP++M+ D + +
Sbjct: 201 LKADFPELEIILNGGIKTLEACHEHLQTFDGVMLGREAYHNPYVMAEVDQQLFGS--TAP 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI ++ +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 259 VISRAEALAQLRPYIAAHIDAG--GSMHHITRHVLGLGTGFPGARKFRQLLS 308
>gi|417555344|ref|ZP_12206413.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-81]
gi|417561058|ref|ZP_12211937.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC137]
gi|421201204|ref|ZP_15658363.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC109]
gi|421454120|ref|ZP_15903469.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-123]
gi|421634156|ref|ZP_16074775.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-13]
gi|421805808|ref|ZP_16241684.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-A-694]
gi|395523640|gb|EJG11729.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC137]
gi|395563236|gb|EJG24889.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC109]
gi|400212887|gb|EJO43844.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-123]
gi|400391761|gb|EJP58808.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-81]
gi|408704874|gb|EKL50230.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-13]
gi|410408070|gb|EKP60045.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-A-694]
Length = 338
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV+ CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAGCIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|59801940|ref|YP_208652.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA 1090]
gi|194099440|ref|YP_002002542.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae NCCP11945]
gi|240014854|ref|ZP_04721767.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI18]
gi|240017300|ref|ZP_04723840.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae FA6140]
gi|240121373|ref|ZP_04734335.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae PID24-1]
gi|291043074|ref|ZP_06568797.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|293398413|ref|ZP_06642591.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae F62]
gi|385336396|ref|YP_005890343.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
gi|59718835|gb|AAW90240.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934730|gb|ACF30554.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|291012680|gb|EFE04663.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|291610884|gb|EFF39981.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae F62]
gi|317164939|gb|ADV08480.1| tRNA-dihydrouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
Length = 348
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/299 (49%), Positives = 203/299 (67%), Gaps = 6/299 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 31 LDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM D+V I +TV
Sbjct: 91 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMHDAVGIPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 151 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 210
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 211 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGD---N 267
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 268 RAPIEYADLVQRLYTYSQVQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLL 326
>gi|378581909|ref|ZP_09830549.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
gi|377815224|gb|EHT98339.1| tRNA-dihydrouridine synthase A [Pantoea stewartii subsp. stewartii
DC283]
Length = 331
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T + LYTEM TT AI+ K L F+ EEHP+A Q+G ++P L
Sbjct: 16 LDWTDRHCRYFHRLLTGDTLLYTEMVTTGAIIHGKGDYLAFSEEEHPVALQLGGSDPAAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + ++ YDE+NLN GCPS+RVQNG FGA LM + LV+D IKAMRD V+I +TVK
Sbjct: 76 AQCAALAEQRDYDEVNLNVGCPSDRVQNGRFGACLMAEAGLVADGIKAMRDVVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+GTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 136 TRIGIDEQDSYAFLTDFIGTVAERGGCDTFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L I INGG+KT +E HL ++DGVM+GREAY+NP ++++ D +
Sbjct: 196 LKRDFPQLTIAINGGVKTLEEAKTHLQHLDGVMMGREAYQNPGILAHVDREVFGREQPAA 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L K + +TRHMLGL + I G+ ++++ LS+
Sbjct: 256 DP--VAVVRAMYPYIEAEL--AKGTYLGHVTRHMLGLFQGIPGARQWRRHLSE 304
>gi|398989813|ref|ZP_10693040.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM24]
gi|399014554|ref|ZP_10716843.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM16]
gi|398110575|gb|EJM00474.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM16]
gi|398146480|gb|EJM35223.1| tRNA dihydrouridine synthase A [Pseudomonas sp. GM24]
Length = 328
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 195/292 (66%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L N EHP+A Q+G + P
Sbjct: 18 MDWTDRHCRFFLRLLSKNALLYTEMVTTGALLNGDHERFLRHNEAEHPLALQLGGSVPLD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAM+D+V I +TV
Sbjct: 78 LAACARMAQDHGYDEVNLNVGCPSDRVQNNMIGACLMGHPQLVADCVKAMQDAVSIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 138 KHRIGINGRDSYAELCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 198 LKADFPELEIVLNGGIKTMEACLEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--SAP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 256 VISRAEALAQLRPYIAEHLLAGGA--MHHITRHVLGLGTGFPGARKFRQLLS 305
>gi|238798490|ref|ZP_04641969.1| tRNA-dihydrouridine synthase A [Yersinia mollaretii ATCC 43969]
gi|238717652|gb|EEQ09489.1| tRNA-dihydrouridine synthase A [Yersinia mollaretii ATCC 43969]
Length = 343
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 202/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGDYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 88 AQCAKQAEFRGYNEINLNVGCPSDRVQNGRFGACLMAEANLVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + SN P
Sbjct: 208 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVDRELFDSNAP-- 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 -VVDSVKAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|385342626|ref|YP_005896497.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240149]
gi|385857936|ref|YP_005904448.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NZ-05/33]
gi|421549904|ref|ZP_15995912.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|433470627|ref|ZP_20428026.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 68094]
gi|433476923|ref|ZP_20434250.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70012]
gi|433521136|ref|ZP_20477836.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 61103]
gi|433525327|ref|ZP_20481971.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 69096]
gi|433538106|ref|ZP_20494592.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70030]
gi|254671973|emb|CBA04409.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha275]
gi|325202832|gb|ADY98286.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240149]
gi|325208825|gb|ADZ04277.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NZ-05/33]
gi|402331322|gb|EJU66661.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 69166]
gi|432211675|gb|ELK67623.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 68094]
gi|432217110|gb|ELK72980.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70012]
gi|432262174|gb|ELL17418.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 61103]
gi|432263113|gb|ELL18338.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 69096]
gi|432275782|gb|ELL30849.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 70030]
Length = 336
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/299 (49%), Positives = 204/299 (68%), Gaps = 6/299 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVKIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T +EI HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEEIAQHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLL 314
>gi|299771563|ref|YP_003733589.1| tRNA-dihydrouridine synthase A [Acinetobacter oleivorans DR1]
gi|298701651|gb|ADI92216.1| tRNA-dihydrouridine synthase A [Acinetobacter oleivorans DR1]
Length = 334
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 202/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD++A+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYSAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+ +V+I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHTMQKAVKIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTYFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ L +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLAEM-----GQLWNLE 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLG 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|127511470|ref|YP_001092667.1| tRNA-dihydrouridine synthase A [Shewanella loihica PV-4]
gi|126636765|gb|ABO22408.1| TIM-barrel protein, yjbN family [Shewanella loihica PV-4]
Length = 329
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 202/293 (68%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 20 LDWTDRHYRYFARLMSSELLLYTEMVTTGAIIHGKGDYLAYNQEEHPLALQLGGSNPEDL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+ C+ AM + V+I +TVK
Sbjct: 80 AKCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAQCVAAMNEVVDIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ +FV VS+AGC TFI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 140 TRIGIDEQDSYEFLTEFVDKVSAAGCDTFIIHARKAWLQGLSPKENREIPELDYDRVYRL 199
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+D+P+L I INGG+KT +E HL +DGVM+GREAY+NP+L++ D + P
Sbjct: 200 KQDYPQLSISINGGVKTLEECGEHLKQLDGVMVGREAYQNPYLLAQVDQQLCGLDKP--- 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R ++ MI YI + L + +N ITRHM GL + GS +++ LS+
Sbjct: 257 VLSRDAVLENMIPYIEKHLVSG--GRLNHITRHMTGLYQGEAGSRAWRRYLSE 307
>gi|109900349|ref|YP_663604.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas atlantica T6c]
gi|109702630|gb|ABG42550.1| tRNA-U16,U17-dihydrouridine synthase [Pseudoalteromonas atlantica
T6c]
Length = 345
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 201/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F RQI+++S LYTEM TT AI+ K L FN EHP+A Q+G ++P +
Sbjct: 18 LDWTDKHCRYFLRQISKHSLLYTEMVTTGAIIFGKGDYLAFNDTEHPVALQLGGSDPVDM 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI+AM+ V+I +TVK
Sbjct: 78 ARCAVLAQEQGYDEVNINVGCPSDRVQNGRFGACLMAEPETVAACIQAMQKEVDIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++ Y + DF+ V+ AGC F VHAR A+LK L+PK+NR IP L Y+ VY L
Sbjct: 138 SRIGIDDMDEYKDLTDFIQIVADAGCDIFTVHARKAWLKGLSPKENRDIPPLMYDRVYAL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K++FP+L + INGG+KT + +HL +DGVM+GRE Y NP+++++ D +Y + +
Sbjct: 198 KEEFPQLNLSINGGVKTLDDATMHLEKLDGVMIGREVYSNPYILADVDKLFYQD--DSPV 255
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P+R +I++ M+ Y+ Q+ + +I RHMLGL + G +++ LS+
Sbjct: 256 PSREEIVHAMLPYVEAQMASG--ARAWNIARHMLGLFQGQPGGRIWRRYLSQ 305
>gi|296840825|ref|ZP_06863533.2| tRNA dihydrouridine synthase A [Neisseria polysaccharea ATCC 43768]
gi|296839826|gb|EFH23764.1| tRNA dihydrouridine synthase A [Neisseria polysaccharea ATCC 43768]
Length = 319
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 205/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++
Sbjct: 2 LDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDSSD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 62 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 122 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 181
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FPELEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 182 RLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 238
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 239 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAALLK 298
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 299 GNDGGLILEA 308
>gi|421656391|ref|ZP_16096699.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-72]
gi|408505780|gb|EKK07499.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-72]
Length = 334
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GRE Y NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGRETYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|422349688|ref|ZP_16430577.1| tRNA dihydrouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657897|gb|EKB30777.1| tRNA dihydrouridine synthase A [Sutterella wadsworthensis
2_1_59BFAA]
Length = 328
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 203/298 (68%), Gaps = 6/298 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +T + LYTEM TT AI+ G++ L F+ EHP+A Q+G ++P
Sbjct: 16 LDWTDRHCRYFHRLLTSRARLYTEMVTTGAIIHGDRDRLLGFSQPEHPVALQLGGSDPAD 75
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+S +I +GYDE NLNCGCPS RVQ G FGA LM +P V+ C++AM+D + +TV
Sbjct: 76 LAESVRIASAYGYDEYNLNCGCPSERVQKGSFGACLMLEPQTVAACVRAMQDVTDKPVTV 135
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD N Y FVRDFVGTV AGCR FIVH R+A+LK L+PK+NR++P L +
Sbjct: 136 KHRIGVDDHNEYGFVRDFVGTVYDAGCRVFIVHTRSAWLKGLSPKENREVPPLVRETAFR 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LKKDFP+ ++ING I + E ++ +DGVM+GR AY+NP++++ D Y ++
Sbjct: 196 LKKDFPDTVMLINGQIASLDEAKALVDAGMDGVMVGRAAYQNPWMLAGVDEVLYGV--EH 253
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ TR++ ++RM Y+ + ++ + I ++ RH+ GL + + G+ +++Q+LS P +
Sbjct: 254 DV-TRLECVHRMTAYLEENYRDD-VHAIRAVARHVNGLAQGLPGARRWRQVLSDPAAI 309
>gi|392546833|ref|ZP_10293970.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas rubra ATCC 29570]
Length = 337
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AI+ K L F E P+A Q+G ++PK L
Sbjct: 28 LDWTDRHCRTFHRKLTQHAVLYTEMITTGAIIFGKGDYLHFGEHEMPVALQLGGSDPKAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK +++GY+E+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 88 AECAKRAEQYGYNEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVAAMKGEVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + +AGC FI+HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 148 TRIGIDEQDSYEFLTRLIDASKTAGCDDFIIHARKAWLQGLSPKENREIPPLDYPRVYKL 207
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+ +L I INGG+KT +E HL ++DGVM+GREAY NPF+++ D Y P +
Sbjct: 208 KQDYSDLHISINGGVKTIEECQHHLAHLDGVMIGREAYSNPFMLAEVDSALY-GAPAF-T 265
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR ++ M YI ++ +K N I RHMLG+ +N G+ F++ LS+
Sbjct: 266 QTRHQVVRSMYDYIEAEM--SKGANFWHIARHMLGIFQNQPGARGFRRHLSE 315
>gi|300023380|ref|YP_003755991.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
gi|299525201|gb|ADJ23670.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans ATCC
51888]
Length = 335
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHRQ+T + LYTEM T A++ G++ L ++ EHPIA Q+G ++P K
Sbjct: 14 MDWTDRHCRVFHRQLTTRALLYTEMVTADAVIHGDRARLLGYSEVEHPIALQLGGSDPAK 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + GYDEINLN GCPS+RVQ G FGA LM++P LV+ C+ AMR + +TV
Sbjct: 74 LAEAARIGAELGYDEINLNVGCPSDRVQEGRFGACLMSEPELVAACVAAMRAHQPVPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD ++ + +R F+ V+ AGC F+VHAR A+LK L+PK+NR++P L Y VY
Sbjct: 134 KCRIGIDDQDAEEDLRRFIDVVADAGCTRFVVHARKAWLKGLSPKENREVPPLDYERVYR 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK P+LEI+INGGI+T +E HL+++DGVMLGR AY+NP ++++ D + +
Sbjct: 194 LKAARPDLEIVINGGIETIEEARAHLDHVDGVMLGRAAYQNPAILADVDRLIFDA--DTE 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR + M+ YI Q L ++++TRH+LGL F++ LS+
Sbjct: 252 SPTRAAALEAMLPYIEQHLKRG--GRLSNVTRHVLGLYHGQPRGKTFRRHLSE 302
>gi|33151604|ref|NP_872957.1| tRNA-dihydrouridine synthase A [Haemophilus ducreyi 35000HP]
gi|38604736|sp|Q7VNV2.1|DUSA_HAEDU RecName: Full=tRNA-dihydrouridine synthase A
gi|33147824|gb|AAP95346.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 323
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++ + LYTEM T AIL K L+++ E P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDLLEYDPAEQPVALQLGGSDPTQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++Q GY EINLN GCPS+RVQNG FGA LM LV+DCIKAM+D V+I +T+K
Sbjct: 76 ANCAKLVQARGYTEINLNVGCPSDRVQNGMFGACLMANADLVADCIKAMQDVVDIPVTIK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGID ++SY F+ DF+ + + FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDTLDSYAFLCDFIDKIQPYS-QDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L I INGGIKT EI HL +DGVM+GREAY+NP L+ D + Q I
Sbjct: 195 KRDFPQLNISINGGIKTIDEIKQHLTKVDGVMVGREAYQNPALLGEIDQQLFDQ-NQPLI 253
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
RI + N M+ YI QQL +K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 254 TARIAVEN-MLPYIEQQL--SKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>gi|445486360|ref|ZP_21457418.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii AA-014]
gi|444769845|gb|ELW94013.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii AA-014]
Length = 334
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 205/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT + HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFADTQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVK 312
>gi|338739151|ref|YP_004676113.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
gi|337759714|emb|CCB65545.1| tRNA-dihydrouridine synthase [Hyphomicrobium sp. MC1]
Length = 334
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR++T+ + LYTEM T A++ G+++ L F+AEEHPIA Q+G ++P K
Sbjct: 14 MDWTDRHCRVFHRRLTKRALLYTEMVTADAVIHGDRERLLGFSAEEHPIALQLGGSDPAK 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +A+I GYDEINLN GCPS+RVQ G FGA LM +P LV+ C+ AMR+S + ++V
Sbjct: 74 LATAARIGADLGYDEINLNVGCPSDRVQEGRFGACLMAEPELVAACVSAMRESQPVPVSV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD ++ + F+ V+ GC +F+VHAR A+LK L+PK+NR++P L Y VY
Sbjct: 134 KCRIGIDDQDAEADLTRFIDVVADTGCTSFVVHARKAWLKGLSPKENREVPPLDYQRVYR 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK P+L I+INGGI+T + + HL ++DGVMLGR AY+NP+++++ D +++
Sbjct: 194 LKARRPDLTIVINGGIETIADAETHLEHVDGVMLGRAAYQNPYILADVDRAIFAD--ASA 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR + + ++ Y+ + + N ++++TRH+LG+ F+++LS+
Sbjct: 252 PPTRGEALTDLLPYVERHVANG--GRLSNVTRHILGIYHGQPRGRAFRRLLSE 302
>gi|187478770|ref|YP_786794.1| tRNA-dihydrouridine synthase A [Bordetella avium 197N]
gi|115423356|emb|CAJ49890.1| tRNA-dihydrouridine synthase A [Bordetella avium 197N]
Length = 327
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 6/292 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TDRHCR FHR + ++ LYTEM TT A++ GN + LDF+ EHP+A Q+G +EP
Sbjct: 14 IDVTDRHCRYFHRLLAPHARLYTEMITTGALMHGNVERHLDFDETEHPVALQLGGSEPDA 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +A++ ++WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAM+D+V+I +TV
Sbjct: 74 LAAAARLGRQWGYDEVNLNCGCPSERVQRGAFGACLMAEPDLVADCMKAMQDAVDIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D SY FVRDFVG + GCR F+VHARNA LK L+PK NR+IP L+Y+
Sbjct: 134 KHRLGLDYNESYAFVRDFVGKIYDTGCRVFVVHARNAVLKGLSPKDNREIPPLRYDVAAQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPE I++NGG+ + + DGVMLGR A+ P ++S L + P +
Sbjct: 194 LKHDFPEATIVLNGGLADATQALDAASRFDGVMLGRAAWHTPRVLSELSLRLW---PSTR 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+PT +++ M+ Y +Q+ + + R +LGL+ N G+ ++++LS
Sbjct: 251 LPTDAQVVDAMVEYTTRQVARG--VPLRVMLRPLLGLVNNQSGARGWRRLLS 300
>gi|119469148|ref|ZP_01612132.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
gi|119447400|gb|EAW28668.1| tRNA-dihydrouridine synthase A [Alteromonadales bacterium TW-7]
Length = 329
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 21 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPEAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM++ V I +TVK
Sbjct: 81 AKCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKNEVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 141 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 200
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y + +
Sbjct: 201 KKDYPQLDLSINGGVKTVEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDTANTQ- 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR D++ M YI +++ N + RHMLG+ + G+ F++ LS+
Sbjct: 260 -TRHDVVRSMYDYIEEEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 308
>gi|389732527|ref|ZP_10189473.1| tRNA-dihydrouridine synthase A [Rhodanobacter sp. 115]
gi|388440416|gb|EIL96798.1| tRNA-dihydrouridine synthase A [Rhodanobacter sp. 115]
Length = 311
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 199/293 (67%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ ++ LYTEM T+ A++ G + L+ + +EHP+A Q+G +EP +
Sbjct: 2 MDWTDRHCRYFHRLLSPHARLYTEMVTSAALVRGRQLRLLEHSQQEHPVALQLGGSEPGE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+ + GYDEINLN GCPS+RVQ+G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 62 LAQAARFGAEAGYDEINLNVGCPSDRVQSGRFGACLMYEPALVADCVKAMRDAVSVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD + Y ++ F T+ AG +VHAR A+LK L+PK+NR+IP L Y VY
Sbjct: 122 KCRIGVDDQDDYAGLQHFTETMLEAGVGVLVVHARKAWLKGLSPKENREIPPLDYERVYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+L + INGG+ T +++ HL +DGVMLGR AY +P+L++ + Y
Sbjct: 182 LKREFPQLVVAINGGVTTVEQVRAHLAQVDGVMLGRAAYHDPWLLARLETALYGE----P 237
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R ++ R+ Y+ +L + ITRH+LGL + G+ F+++LS+
Sbjct: 238 LPEREAVLQRLRPYVEAELARG--TALKHITRHLLGLYQGEPGARGFRRVLSE 288
>gi|344341571|ref|ZP_08772489.1| TIM-barrel protein, yjbN family [Thiocapsa marina 5811]
gi|343798503|gb|EGV16459.1| TIM-barrel protein, yjbN family [Thiocapsa marina 5811]
Length = 312
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F R I+R++ LYTEM TT A++ G ++ L F+A EHP+A Q+G ++P+
Sbjct: 2 LDWTDRHCRYFLRLISRHTLLYTEMVTTGALIHGERERFLAFDAAEHPVALQLGGSDPRD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+ A++ GYDEIN+N GCPS+RVQNG FGA LM +P LV+DC+ AM+D+V + +TV
Sbjct: 62 MTHCARMGADRGYDEININVGCPSDRVQNGRFGACLMAEPSLVADCVAAMKDAVAVPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SYD + DF GTV+ AGC +VHAR A+L L+PK+NR IP L+Y V
Sbjct: 122 KTRIGIDDRDSYDELLDFAGTVTEAGCDALVVHARKAWLAGLSPKENRDIPPLRYEVVER 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+D P I INGGIKT E L +DGVM+GREAY NP++++ D + + +
Sbjct: 182 LKRDLPHQTIAINGGIKTLDETAGFLKTLDGVMIGREAYHNPWILAEADRTIFGD--ARR 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR +I++ + Y+ ++L +++++RH+LGL + G+ +++ LS+
Sbjct: 240 APTRNEILDAFLPYVERELAGG--TPLSAMSRHILGLFQGQPGARAWRRHLSE 290
>gi|345429046|ref|YP_004822163.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
gi|301155106|emb|CBW14569.1| tRNA-dihydrouridine synthase A [Haemophilus parainfluenzae T3T1]
Length = 328
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++ + LYTEM T AI+ K LDF+ +E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSKNALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV++CI M+ V I +TVK
Sbjct: 79 KHCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVAECIAEMQRVVNIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ DF+ V GC+ FIVHAR A+L L+PK+NR+IP L Y+ VY L
Sbjct: 139 TRIGIDDLDSYEFLCDFIEKVHHDGCQEFIVHARKAWLSGLSPKENREIPPLDYDRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDFP+L I INGGIKT +E+ HL ++DGVM+GREAY+NP L+ D + I
Sbjct: 199 KKDFPQLTIAINGGIKTIEEMKYHLQFVDGVMVGREAYQNPSLLGYIDQMLFD--ANADI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + M YI +QL+ +N I RHMLG +N KG+ ++++ LS+
Sbjct: 257 VTPKQAVEAMFPYIEKQLSQGVY--LNHIVRHMLGAFQNCKGARQWRRYLSE 306
>gi|390950169|ref|YP_006413928.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
gi|390426738|gb|AFL73803.1| tRNA-U16,U17-dihydrouridine synthase [Thiocystis violascens DSM
198]
Length = 336
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F R ITR+S LYTEM TT A+L G+++ L F+ EHP+A Q+G ++P +
Sbjct: 23 LDWTDRHFRFFLRLITRHSLLYTEMVTTGALLHGDRERFLRFDPAEHPVALQLGGSDPVE 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A+ A++ WGYDEIN+N GCPS+RVQNG FGA LM +P LV+DC+ AM+D+V + +TV
Sbjct: 83 MARCARLGANWGYDEININVGCPSDRVQNGRFGACLMAEPGLVADCVAAMKDAVTVPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY + DFVGT ++AGC IVHAR A+LK L+PK+NR +P L+Y V
Sbjct: 143 KTRIGIDDRDSYGELVDFVGTQAAAGCDALIVHARKAWLKGLSPKENRDVPPLRYEVVQQ 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L I INGGIKT E L +DGVM+GREAY NP++++ D + + +
Sbjct: 203 LKTDFPDLTISINGGIKTLIEAADFLTTLDGVMIGREAYHNPWMLAQADRVVFGD--DHP 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR ++++R + Y +++L +++++RH+LGL + G +++ +S+
Sbjct: 261 PLTRHEVLDRFLPYAQRELAAG--VPLSAMSRHLLGLFQGQPGGRAWRRRISE 311
>gi|381160439|ref|ZP_09869671.1| tRNA dihydrouridine synthase A [Thiorhodovibrio sp. 970]
gi|380878503|gb|EIC20595.1| tRNA dihydrouridine synthase A [Thiorhodovibrio sp. 970]
Length = 315
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TD+H R F R I+R++WLY+EM TT A++ G+ L F+ EHP+A Q+G ++P +
Sbjct: 2 LDWTDKHFRFFARLISRHTWLYSEMITTGALIHGDTGRFLRFDPAEHPLALQLGGSDPAE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ WGYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ +V I ++V
Sbjct: 62 LARCARMGADWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVAAMKAAVSIPVSV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + DFV +S+AGC ++HAR A+L+ L+P++NR++P L+Y+
Sbjct: 122 KTRIGIDDRDSYEELADFVTRISAAGCDLLVLHARKAWLQGLSPRENREVPPLRYDVALQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
L+ DFP L +++NGGI T ++ +DGVM+GREAY+NP+L++ D + + +
Sbjct: 182 LRADFPRLPLVLNGGITTLEQAQYWCERLDGVMIGREAYQNPWLLAAADSELFGD--AHP 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P+R ++ R Y+ + L +NSI+RH+LGL G+ +++++LS+
Sbjct: 240 LPSRHQVLERFYPYVERCLGEG--VPLNSISRHLLGLFNGCPGARRWRRLLSE 290
>gi|385327705|ref|YP_005882008.1| yjbN; tRNA-dihydrouridine synthase A [Neisseria meningitidis
alpha710]
gi|416186449|ref|ZP_11613729.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M0579]
gi|308388557|gb|ADO30877.1| yjbN; tRNA-dihydrouridine synthase A [Neisseria meningitidis
alpha710]
gi|325136923|gb|EGC59520.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M0579]
Length = 336
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGITVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTAN- 257
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 258 --PIGYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|403051926|ref|ZP_10906410.1| tRNA-dihydrouridine synthase A [Acinetobacter bereziniae LMG 1003]
Length = 342
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AI+ G LD+N EEHPI Q+G + PK+
Sbjct: 25 MDWTTRDYRFFARLFNPNIILYTEMVTTGAIIYGGANRHLDYNHEEHPIVLQLGGSNPKE 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +K+ Q WGYDEINLN GCPS+RVQN GA LM +P LV++CI MR++V+I +TV
Sbjct: 85 LATCSKMAQDWGYDEINLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMRNAVDIPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + +FV TV+ GC FIVHAR A L+ L+PK+NR IP L+Y VY
Sbjct: 145 KHRIGIDDMQSYEEMLNFVDTVAKTGCNNFIVHARIALLQGLSPKENRDIPPLRYEDVYR 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+D PEL I INGG+KT E HL ++DGVM+GREAY NP+L++ L
Sbjct: 205 LKQDRPELLIEINGGVKTFAETQEHLKHVDGVMIGREAYHNPYLLAEL-----GQLWDLD 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+++M+ YI +++ +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 260 LPDRFEIMDQMLPYIAKRMQEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTFA 317
Query: 300 NFQ 302
+ +
Sbjct: 318 DVE 320
>gi|380510524|ref|ZP_09853931.1| tRNA-dihydrouridine synthase A [Xanthomonas sacchari NCPPB 4393]
Length = 339
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 196/293 (66%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A+ LG++ LDF+A EHP+A Q+G +EP
Sbjct: 26 MDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLDFDAAEHPLALQLGGSEPAL 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV++C+ AM ++V+I +TV
Sbjct: 86 LAQAARIGQDWGYDEINLNCGCPSDRVQAGRFGACLMREPALVAECVAAMVEAVDIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+D + Y FV V++AGC F+VHARNA+L+ L+PK+NR++P L+Y++ +
Sbjct: 146 KCRLGVDQDDDYAVFLAFVDQVAAAGCELFVVHARNAWLQGLSPKENREVPPLRYDWAHR 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L++++NGG+ + L +DGVMLGR AY +P+++ D + L
Sbjct: 206 LKRERPQLQVVLNGGLAAVETAQAQLQAVDGVMLGRAAYHDPYVLHRLD----AALTGAA 261
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +++ + Y+ +L + ITRH+LGL G F+Q+LS+
Sbjct: 262 LRPRAELLRALRPYVEARLAEG--LALKHITRHLLGLFHGQPGGRAFRQVLSE 312
>gi|218768876|ref|YP_002343388.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis Z2491]
gi|433474824|ref|ZP_20432171.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 88050]
gi|433479135|ref|ZP_20436433.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63041]
gi|433512709|ref|ZP_20469510.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63049]
gi|433514849|ref|ZP_20471624.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2004090]
gi|433516934|ref|ZP_20473686.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 96023]
gi|433519124|ref|ZP_20475848.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 65014]
gi|433523273|ref|ZP_20479944.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97020]
gi|433528800|ref|ZP_20485407.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3652]
gi|433529607|ref|ZP_20486205.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3642]
gi|433531724|ref|ZP_20488292.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2007056]
gi|433533934|ref|ZP_20490482.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2001212]
gi|433540279|ref|ZP_20496735.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63006]
gi|121052884|emb|CAM09236.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|432212333|gb|ELK68272.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 88050]
gi|432218489|gb|ELK74347.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63041]
gi|432249788|gb|ELL05188.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63049]
gi|432255772|gb|ELL11100.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 96023]
gi|432255909|gb|ELL11235.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2004090]
gi|432256628|gb|ELL11949.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 65014]
gi|432262465|gb|ELL17704.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97020]
gi|432263904|gb|ELL19114.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3652]
gi|432269203|gb|ELL24365.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2007056]
gi|432269461|gb|ELL24619.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM3642]
gi|432273178|gb|ELL28277.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2001212]
gi|432277928|gb|ELL32973.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 63006]
Length = 336
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 205/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTAN- 257
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 258 --PIGYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|226356731|ref|YP_002786471.1| tRNA-dihydrouridine synthase A [Deinococcus deserti VCD115]
gi|226318721|gb|ACO46717.1| putative tRNA-dihydrouridine synthase A [Deinococcus deserti
VCD115]
Length = 346
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 198/294 (67%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR +TR + LYTEM TT AIL G+++ L FN EHP+A Q+G ++P
Sbjct: 22 MDWTDRHCRVFHRTLTRRTLLYTEMVTTGAILHGDRERHLGFNRVEHPVALQLGGSDPAA 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ ++ + +GYDEINLNCGCPS+RV +G FGA LM P +V+ ++AMR + +TV
Sbjct: 82 LAECTRMAEDYGYDEINLNCGCPSDRVSSGSFGACLMGTPDVVARAVEAMRGVTRLPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV +AGC+TFIVHAR A+L L+PK+NR+IP L+Y V
Sbjct: 142 KHRIGIDDLDSYEHLTRFVRTVEAAGCQTFIVHARKAWLSGLSPKENREIPPLRYEVVEQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP L +++NGG+ ++ LN+ DGVM+GR AY+ P++++ D + +
Sbjct: 202 LKADFPHLTVVLNGGVLDLRQAQGALNWADGVMIGRAAYQTPYVLAAADHEIFG---EAA 258
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P TR + I + Y+ QL + +N + +H LGL G+ +K+ LS+
Sbjct: 259 VPVTRREAIEAFLPYVAGQLAAG--QPLNRMMKHTLGLFAGQPGARHWKRTLSE 310
>gi|385338702|ref|YP_005892575.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
gi|319411116|emb|CBY91521.1| K05539 tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE
2594]
Length = 338
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 205/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 21 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 81 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVGIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 141 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 200
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 201 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTAN- 259
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 260 --PIGYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 317
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 318 DNDGSLILEA 327
>gi|440739646|ref|ZP_20919153.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens BRIP34879]
gi|440379117|gb|ELQ15720.1| tRNA-dihydrouridine synthase A [Pseudomonas fluorescens BRIP34879]
Length = 336
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ + L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRYFLRLLSKHALLYTEMVTTGAILHGDHERFLRHSEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAQLCDFVGQVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEII+NGGIKT ++ + HL DGVMLGREAY NP++++ D + + +
Sbjct: 206 LKQDFPELEIILNGGIKTLEQCEKHLQTFDGVMLGREAYHNPYVLAEVDQRLFGS--EAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R ++ + YI + L + ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VISRAQVLVLLRPYIAEHLASG--GTMHHITRHVLGLGTGFPGARKFRQLLS 313
>gi|442610331|ref|ZP_21025054.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748107|emb|CCQ11116.1| tRNA dihydrouridine synthase A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 336
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 194/292 (66%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++++++ LYTEM TT AI+ K L F E P+A Q+G ++PK L
Sbjct: 28 LDWTDRHCRTFHRKLSKHAVLYTEMVTTGAIIFGKGDYLSFGEHEMPVALQLGGSDPKAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK GY EINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 88 AECAKRAAALGYSEINLNVGCPSDRVQNGRFGACLMAEPKLVAECVAAMKAEVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC I+HAR A+LK L+PK+NR+IP L Y VY L
Sbjct: 148 TRIGIDEQDSYEFLTQLIEDCHDVGCDDVIIHARKAWLKGLSPKENREIPPLDYPRVYQL 207
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L + INGGIKT +E HL ++DGVM+GREAY NPF++S D Y + P
Sbjct: 208 KKDYPQLHVSINGGIKTIEECQHHLQFVDGVMIGREAYANPFMLSQVDELIYGDAPFAM- 266
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T+ +++ M YI Q+ N I RHMLG+ +N +G+ F++ LS+
Sbjct: 267 -TKHEVVRSMYDYIETQMTQG--SNFWHIARHMLGIFQNQQGARLFRRHLSE 315
>gi|418287560|ref|ZP_12900144.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM233]
gi|418289820|ref|ZP_12902053.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM220]
gi|372202823|gb|EHP16590.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM220]
gi|372203638|gb|EHP17268.1| tRNA dihydrouridine synthase A [Neisseria meningitidis NM233]
Length = 336
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTAN- 257
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 258 --PIGYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|421786751|ref|ZP_16223139.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-82]
gi|410410950|gb|EKP62835.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-82]
Length = 338
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD+NA+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYNAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY E+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYGEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|387892809|ref|YP_006323106.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens A506]
gi|387160557|gb|AFJ55756.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens A506]
Length = 336
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ + L N EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHERFLRHNEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGMVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP LEI +NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKRDFPALEINLNGGIKTLEQCQAHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ TR + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 264 VITRAEALAQLRPYIAEHLATG--GSMHHITRHVLGLGTGFPGARKFRQLLS 313
>gi|381400469|ref|ZP_09925434.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
gi|380834514|gb|EIC14354.1| tRNA-dihydrouridine synthase A [Kingella kingae PYKK081]
Length = 357
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/299 (49%), Positives = 206/299 (68%), Gaps = 5/299 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR++WLYTEM AI+ G+ L N E P+A Q+G +EP
Sbjct: 35 LDWTDRHYRHMARQITRHTWLYTEMINAGAIVYGDPDRFLQRNECEDPVALQLGGSEPTL 94
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LA++A+ ++GYDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+D+V I IT
Sbjct: 95 LAQAAQKAAQYGYDEINLNCGCPSPRVQKGAFGACLMLDVNLVADCLNAMQDAVPAIPIT 154
Query: 119 VKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
+KHRIGID Y + DFVG++ + CRTFIVHARNA+L L+PK+NR+IP L+Y+FV
Sbjct: 155 IKHRIGIDKQTEYQPLADFVGSLHNKTACRTFIVHARNAWLDGLSPKENREIPPLRYDFV 214
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y+LK++FP+LEIIINGG++T +I HL ++DGVM+GREAY NP++M ++D +Y +
Sbjct: 215 YHLKQEFPDLEIIINGGVQTNTQIAEHLQHVDGVMMGREAYHNPYIMHDWDTLFYGE--K 272
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
PTR I ++ Y QQL+ + + + RH LGL + G+ ++++LS +LL
Sbjct: 273 QPAPTREQIAQQLYNYATQQLSRQQGTILRHMVRHYLGLTHGLNGAKIWRRMLSDADLL 331
>gi|385850602|ref|YP_005897117.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M04-240196]
gi|325205425|gb|ADZ00878.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M04-240196]
Length = 336
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTAN- 257
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
P D++ R+ Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 258 --PIGYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|447915890|ref|YP_007396458.1| tRNA-dihydrouridine synthase A [Pseudomonas poae RE*1-1-14]
gi|445199753|gb|AGE24962.1| tRNA-dihydrouridine synthase A [Pseudomonas poae RE*1-1-14]
Length = 311
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 200/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ + L + EHP+A Q+G + P
Sbjct: 1 MDWTDRHCRYFLRLLSKHALLYTEMVTTGAILHGDHERFLRHSEAEHPLALQLGGSVPAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GAILM P LV+DC+KAMRD+V I +TV
Sbjct: 61 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGAILMAHPALVADCVKAMRDAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 121 KHRIGINGRDSYAQLCDFVGQVKDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEII+NGGIKT ++ + HL DGVMLGREAY NP++++ D + + +
Sbjct: 181 LKQDFPELEIILNGGIKTLEQCEKHLQTFDGVMLGREAYHNPYVLAEVDQRLFGS--EAP 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R ++ + YI + L + ++ ITRH+LGL G+ KF+Q+LS
Sbjct: 239 VISRAQVLVLLRPYIAEHLASG--GTMHHITRHVLGLGTGFPGARKFRQLLS 288
>gi|308451158|ref|XP_003088566.1| hypothetical protein CRE_10759 [Caenorhabditis remanei]
gi|308246538|gb|EFO90490.1| hypothetical protein CRE_10759 [Caenorhabditis remanei]
Length = 338
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 199/303 (65%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AI+ G LD+N EEHPI Q+G + PK
Sbjct: 21 MDWTTRDYRFFARLFNPNIILYTEMVTTGAIIYGGANRHLDYNHEEHPIVLQLGGSNPKD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +K+ Q WGYDEINLN GCPS+RVQN GA LM +P LV++CI MR++V+I +TV
Sbjct: 81 LATCSKMAQDWGYDEINLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMRNAVDIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR +P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAKTGCDNFIVHARIALLQGLSPKENRDVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ PEL I INGG+KT E HL ++DGVM+GREAY NP+L++ L
Sbjct: 201 LKQERPELLIEINGGVKTFAETQAHLKHVDGVMIGREAYHNPYLLAEL-----GQLWNLD 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R DII++M+ YI +++ +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 256 LPDRFDIIDQMLPYIAKRMQEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTFA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|344343484|ref|ZP_08774352.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
gi|343804907|gb|EGV22805.1| TIM-barrel protein, yjbN family [Marichromatium purpuratum 984]
Length = 328
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F R I+R++ LYTEM TT A+L G+++ L F+ EHP+A Q+G ++P
Sbjct: 15 LDWTDRHCRYFLRLISRHTLLYTEMVTTGALLHGDRERFLRFDPSEHPVALQLGGSDPAD 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A A++ ++GYDEIN+N GCPS+RVQNG FGA LM +P +V+DC++AM+D+V + +TV
Sbjct: 75 MASCARLGAEYGYDEININVGCPSDRVQNGRFGACLMAEPGVVADCVRAMKDAVAVPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY + DFVG AGC IVHAR A+L L+PK+NR IP L+Y+ V
Sbjct: 135 KSRIGIDDRDSYGELVDFVGAQVEAGCDALIVHARKAWLSGLSPKENRDIPPLRYDVVLQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I +NGG++ + L +DGVM+GREAY NP++++ D +++
Sbjct: 195 LKRDFPALSISLNGGVQDLDQACALLETLDGVMIGREAYHNPWILAAADARIFAD--PTP 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR +I RM+ YI+++L+ + +I+RH+LGL + G+ +++ +S+
Sbjct: 253 PPTRHQVIERMLPYIQRELDAG--VPLTAISRHLLGLFQGRPGARVWRRWISE 303
>gi|423096295|ref|ZP_17084091.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q2-87]
gi|397888880|gb|EJL05363.1| tRNA dihydrouridine synthase A [Pseudomonas fluorescens Q2-87]
Length = 336
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R +++++ LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 26 MDWTDPHCRYFLRILSKHALLYTEMVTTGALLNGDHERFLRHHEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +++ Q+ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACSRMAQEHGYDEVNLNVGCPSDRVQNNMIGACLMGHPDLVADCVKAMRDAVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + +FVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 146 KHRIGINGRDSYEQLCEFVGTVREAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVVAR 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT + HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKADFPELEIVLNGGIKTLEACHEHLQTFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI L ++ ITRH+LGL G+ +F+Q+LS
Sbjct: 264 VISRAEALAQLRPYIANHLAAGGA--MHHITRHVLGLGTGFPGARRFRQLLS 313
>gi|238782919|ref|ZP_04626947.1| tRNA-dihydrouridine synthase A [Yersinia bercovieri ATCC 43970]
gi|238716122|gb|EEQ08106.1| tRNA-dihydrouridine synthase A [Yersinia bercovieri ATCC 43970]
Length = 339
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQTLLYTEMVTTGAIIHGKGDYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 88 AHCAKQAELRGYNEINLNVGCPSDRVQNGRFGACLMAEANLVADCIKAMRDVVSIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAEQGECDIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + SN P
Sbjct: 208 LKRDFPVLTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPSILTQVDRELFDSNAP-- 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 -VVDSVKAIEALYPYIEQELSRGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>gi|359450016|ref|ZP_09239485.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
gi|358044183|dbj|GAA75734.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20480]
Length = 324
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 16 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPEAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM++ V I +TVK
Sbjct: 76 AKCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKNEVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 136 TRIGIDEQDSYEFLCALIEASYKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y + +
Sbjct: 196 KKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDTANTQ- 254
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR D++ M YI +++ N + RHMLG+ + G+ F++ LS+
Sbjct: 255 -TRHDVVRSMYDYIEEEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 303
>gi|359435578|ref|ZP_09225772.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
gi|357917733|dbj|GAA62021.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20652]
Length = 313
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++PK L
Sbjct: 5 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKAL 64
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V I +TVK
Sbjct: 65 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKNEVNIPVTVK 124
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 125 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 184
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y + +
Sbjct: 185 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDAANTQ- 243
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N I RHMLG+ + G+ F++ LS+
Sbjct: 244 -SRHDVVRSMYDYIEEEMRLG--ANFWHIARHMLGIFQGQPGARGFRRHLSE 292
>gi|386826391|ref|ZP_10113498.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
gi|386427275|gb|EIJ41103.1| tRNA dihydrouridine synthase A [Beggiatoa alba B18LD]
Length = 332
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 209/293 (71%), Gaps = 4/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R F R ++ LY+EM TT AI+ G++ L F+ EHP+A Q+G ++P+
Sbjct: 12 LDWTDRHDRYFLRLLSPSVLLYSEMVTTGAIIHGDRDRFLRFHPSEHPVALQLGGSDPQA 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I + +GY E+NLN GCPS+RVQ+G FGA LM P LV+DC+ M+ +V I ITV
Sbjct: 72 LADCARIAKDYGYAEVNLNVGCPSDRVQSGQFGACLMATPALVADCVATMKQAVNIPITV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+++SY+ + F+ T++ AGC TFI+HAR A+L+ L+PK+NR+IP L Y+ V+
Sbjct: 132 KSRIGIDELDSYEHLCHFIQTIAQAGCDTFIIHARKAWLQGLSPKENREIPPLCYDVVHQ 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K DFP L IIINGG+KT +++ L +DGVM+GREAY+NP+L+++ + ++++ P Y+
Sbjct: 192 IKTDFPHLTIIINGGLKTIADVEQQLLKVDGVMIGREAYQNPYLLADLEQHFFN--PNYQ 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR I+ +MI YI +L++ + N ITRH+LGL + G+ +++ LS+
Sbjct: 250 KPTRQAIVEQMIPYITAELDSGRAYLAN-ITRHLLGLFQGECGARHWRRYLSE 301
>gi|402702506|ref|ZP_10850485.1| tRNA-dihydrouridine synthase A [Pseudomonas fragi A22]
Length = 336
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 194/292 (66%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++ + LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSKNTLLYTEMVTTGALLNGDAERFLRHDEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ Q GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRDSV I +TV
Sbjct: 86 LAGCARMAQAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDSVSIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY+ + DFVGTV AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 146 KHRIGINGRDSYEQLCDFVGTVRDAGCTSFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEII+NGGIKT ++ HL DGVMLGREAY NP++++ D + +
Sbjct: 206 LKADFPELEIILNGGIKTLEQCQEHLQVFDGVMLGREAYHNPYILAEVDQQLFGS--TEP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + Y + ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 264 VISRAQALALLRPY--IAAHIAAGGAMHHITRHILGLGQGFPGARRFRQLLS 313
>gi|416159434|ref|ZP_11605894.1| tRNA dihydrouridine synthase A [Neisseria meningitidis N1568]
gi|433472729|ref|ZP_20430098.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97021]
gi|433481153|ref|ZP_20438424.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2006087]
gi|433483264|ref|ZP_20440501.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2002038]
gi|433485377|ref|ZP_20442582.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97014]
gi|325128934|gb|EGC51788.1| tRNA dihydrouridine synthase A [Neisseria meningitidis N1568]
gi|432212168|gb|ELK68110.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97021]
gi|432218732|gb|ELK74585.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2006087]
gi|432222834|gb|ELK78617.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 2002038]
gi|432224289|gb|ELK80055.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 97014]
Length = 336
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 207/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WL++EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLHSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVKIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T +EI HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEEIAQHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGGLILEA 325
>gi|385338763|ref|YP_005892636.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
gi|319411177|emb|CBY91582.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis WUE 2594]
Length = 336
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQTQIQAGCGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|359440020|ref|ZP_09229946.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20429]
gi|358038094|dbj|GAA66195.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20429]
Length = 310
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 142/311 (45%), Positives = 206/311 (66%), Gaps = 10/311 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++PK L
Sbjct: 2 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 62 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKSEVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 122 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y + +
Sbjct: 182 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDAANTQ- 240
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KPN 294
+R D++ M YI +++ N I RHMLG+ + G+ F++ LS + +
Sbjct: 241 -SRHDVVRSMYSYIEEEMRLG--ANFWHIARHMLGIFQGQPGARGFRRHLSESGHGKQAD 297
Query: 295 LLTIDNFQFFL 305
LL +D F+
Sbjct: 298 LLVMDKALSFV 308
>gi|392555864|ref|ZP_10303001.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas undina NCIMB
2128]
Length = 324
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 16 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPQAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 76 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPNLVAECVAAMKSEVNIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L Y VY L
Sbjct: 136 TRIGIDEEDSYEFLCALIEASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y + +
Sbjct: 196 KKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDAANTQ- 254
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N + RHMLG+ + G+ F++ LS+
Sbjct: 255 -SRHDVVRSMYDYIEEEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 303
>gi|359439600|ref|ZP_09229545.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|359445015|ref|ZP_09234774.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
gi|358025710|dbj|GAA65794.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20311]
gi|358041144|dbj|GAA71023.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20439]
Length = 324
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 16 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPQAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 76 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPNLVAECVAAMKSEVNIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L Y VY L
Sbjct: 136 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLKGLSPKENREVPELNYPRVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y + +
Sbjct: 196 KKDYPQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDAANTQ- 254
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N + RHMLG+ + G+ F++ LS+
Sbjct: 255 -SRHDVVRSMYDYIEEEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 303
>gi|416168181|ref|ZP_11607884.1| tRNA dihydrouridine synthase A [Neisseria meningitidis OX99.30304]
gi|325130878|gb|EGC53608.1| tRNA dihydrouridine synthase A [Neisseria meningitidis OX99.30304]
Length = 336
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP+LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPDLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMHEWDRLFYGDT--- 255
Query: 239 KIPTRI-DIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 256 RSPIEYSDLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|197286568|ref|YP_002152440.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
gi|194684055|emb|CAR45390.1| tRNA-dihydrouridine synthase A [Proteus mirabilis HI4320]
Length = 344
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F RQ+T+ + LYTEM TT AI+ K L ++ EEHPI+ Q+G ++P+ L
Sbjct: 34 LDWTDRHCRYFFRQLTKNTLLYTEMVTTGAIIHGKGDYLKYSNEEHPISLQLGGSDPQAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+KAMRD V+I +TVK
Sbjct: 94 AQCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEAQLVADCVKAMRDVVDIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID+ +SY F+ DF+ TVS C TFI+HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDNQDSYQFLCDFIDTVSRDNNCDTFIIHARKAWLSGLSPKENREVPPLDYPRVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DF L + INGGIK+ +E HL Y+DGVM+GREAY+NP ++++ D + N Q
Sbjct: 214 LKRDFSHLTMAINGGIKSLEEAQEHLKYMDGVMVGREAYQNPSILAHVDHVLFDN--QLP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + M YI ++L+ + ITRHMLG+ + I G+ ++++ LS+
Sbjct: 272 VANAVAAVKAMYPYIEKELSQGTY--LGHITRHMLGIFQGIPGARQWRRHLSE 322
>gi|148981615|ref|ZP_01816472.1| tRNA-dihydrouridine synthase A [Vibrionales bacterium SWAT-3]
gi|145960800|gb|EDK26135.1| tRNA-dihydrouridine synthase A [Vibrionales bacterium SWAT-3]
Length = 315
Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L+++ +EHP+A Q+G + P L
Sbjct: 2 LDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYSEQEHPLALQLGGSNPVDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ +I ITVK
Sbjct: 62 AACAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCVLAMKEVTDIPITVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TVS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 122 TRIGIDDQDSYEFLTKFISTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+KKDF +L I +NGGI T ++ HL ++DGVM+GREAY +PF+++ D + + P
Sbjct: 182 IKKDFSDLVIAVNGGITTLEQTKEHLQHLDGVMIGREAYHSPFILAEVDQQIFGLDTP-- 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI ++L +K ++ I+RHMLGL +++ G+ ++++ +S+
Sbjct: 240 -IKKRSQVVEEMYPYIEREL--SKGASLGHISRHMLGLFQSMPGARQWRRYISE 290
>gi|417951078|ref|ZP_12594187.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
gi|342805351|gb|EGU40621.1| tRNA-dihydrouridine synthase A [Vibrio splendidus ATCC 33789]
Length = 334
Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 203/294 (69%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L+++ +EHP+A Q+G + P L
Sbjct: 21 LDWTDRHCRYFHRLLSQQTLLYTEMVTTGAILHGKGDFLEYSEQEHPLALQLGGSNPVDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ +I ITVK
Sbjct: 81 AACAKLAVERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVADCVSAMKEVTDIPITVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TVS GC F +HAR A+L L+PK+NR+IP L Y+ Y
Sbjct: 141 TRIGIDDQDSYEFLTKFISTVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYDRAYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQY 238
+KKDF +L I +NGGI T ++ HL ++DGVM+GREAY +PF+++ D + + P
Sbjct: 201 IKKDFSDLVIAVNGGITTLEQTKEHLQHLDGVMIGREAYHSPFILAEVDQQIFGLDTP-- 258
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R ++ M YI ++L +K ++ I+RHMLGL +++ G+ ++++ +S+
Sbjct: 259 -IKKRSQVVEEMYPYIEREL--SKGASLGHISRHMLGLFQSMPGARQWRRYISE 309
>gi|184156887|ref|YP_001845226.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ACICU]
gi|332874036|ref|ZP_08441971.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii 6014059]
gi|384130563|ref|YP_005513175.1| dusA [Acinetobacter baumannii 1656-2]
gi|384141847|ref|YP_005524557.1| tRNA-dihydrouridine synthase [Acinetobacter baumannii MDR-ZJ06]
gi|385236155|ref|YP_005797494.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii
TCDC-AB0715]
gi|387125199|ref|YP_006291081.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii MDR-TJ]
gi|407931491|ref|YP_006847134.1| dusA [Acinetobacter baumannii TYTH-1]
gi|416146664|ref|ZP_11601327.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB210]
gi|417570862|ref|ZP_12221719.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC189]
gi|417577165|ref|ZP_12228010.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-17]
gi|417871198|ref|ZP_12516141.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH1]
gi|417875868|ref|ZP_12520668.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH2]
gi|417879638|ref|ZP_12524195.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH3]
gi|417882274|ref|ZP_12526576.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH4]
gi|421201801|ref|ZP_15658956.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AC12]
gi|421535273|ref|ZP_15981535.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AC30]
gi|421630512|ref|ZP_16071215.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC180]
gi|421688451|ref|ZP_16128151.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-143]
gi|421702292|ref|ZP_16141776.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ZWS1122]
gi|421706031|ref|ZP_16145451.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ZWS1219]
gi|421791462|ref|ZP_16227638.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-2]
gi|424053684|ref|ZP_17791215.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Ab11111]
gi|424064621|ref|ZP_17802105.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Ab44444]
gi|425751392|ref|ZP_18869337.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-113]
gi|445464987|ref|ZP_21449765.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC338]
gi|445481425|ref|ZP_21455869.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-78]
gi|183208481|gb|ACC55879.1| tRNA-dihydrouridine synthase [Acinetobacter baumannii ACICU]
gi|322506783|gb|ADX02237.1| dusA [Acinetobacter baumannii 1656-2]
gi|323516652|gb|ADX91033.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii
TCDC-AB0715]
gi|332737777|gb|EGJ68669.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii 6014059]
gi|333366045|gb|EGK48059.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AB210]
gi|342224484|gb|EGT89514.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH2]
gi|342226019|gb|EGT90995.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH1]
gi|342227736|gb|EGT92649.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH3]
gi|342238015|gb|EGU02457.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ABNIH4]
gi|347592340|gb|AEP05061.1| tRNA-dihydrouridine synthase [Acinetobacter baumannii MDR-ZJ06]
gi|385879691|gb|AFI96786.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii MDR-TJ]
gi|395551310|gb|EJG17319.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC189]
gi|395570386|gb|EJG31048.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-17]
gi|398328686|gb|EJN44809.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AC12]
gi|404561194|gb|EKA66430.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii IS-143]
gi|404667170|gb|EKB35091.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Ab11111]
gi|404672704|gb|EKB40508.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Ab44444]
gi|407194464|gb|EKE65604.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ZWS1122]
gi|407194666|gb|EKE65803.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii ZWS1219]
gi|407900072|gb|AFU36903.1| dusA [Acinetobacter baumannii TYTH-1]
gi|408697365|gb|EKL42879.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC180]
gi|409986826|gb|EKO43017.1| tRNA-dihydrouridine synthase A [Acinetobacter baumannii AC30]
gi|410402967|gb|EKP55070.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-2]
gi|425499839|gb|EKU65867.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-113]
gi|444770217|gb|ELW94374.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii Naval-78]
gi|444779119|gb|ELX03113.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii OIFC338]
Length = 334
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 203/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K L +NA+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLGYNAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ V I +TV
Sbjct: 77 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKVVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFDIMEQMLPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|433468576|ref|ZP_20426012.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 98080]
gi|432206157|gb|ELK62169.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 98080]
Length = 336
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 206/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V+I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVKIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ R+ Y + Q+ + + I RH LGLM +K + ++++LS LL
Sbjct: 256 RSPIEYADLVQRLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKNARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGGLILEA 325
>gi|414072094|ref|ZP_11408047.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
gi|410805440|gb|EKS11453.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. Bsw20308]
Length = 329
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++PK L
Sbjct: 21 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 81 ARCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKSEVTIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 141 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 200
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y + +
Sbjct: 201 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDTANTQ- 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N I RHMLG+ + G+ F++ LS+
Sbjct: 260 -SRHDVVRSMYSYIEEEMRLG--ANFWHIARHMLGIFQGQPGARGFRRHLSE 308
>gi|238760286|ref|ZP_04621429.1| tRNA-dihydrouridine synthase A [Yersinia aldovae ATCC 35236]
gi|238701488|gb|EEP94062.1| tRNA-dihydrouridine synthase A [Yersinia aldovae ATCC 35236]
Length = 349
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P L
Sbjct: 34 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKGDYLAYSEQDHPVALQLGGSDPLAL 93
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK + GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD V I +TVK
Sbjct: 94 AHCAKSAELRGYNEINLNVGCPSDRVQNGRFGACLMGEAELVADCIKAMRDVVSIPVTVK 153
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 154 TRIGIDQLDSYEFLCEFVQTVAERGECNIFTIHARKAWLSGLSPKENREVPPLNYERVYQ 213
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 214 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPCILAQVDRELFD--PNAP 271
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + + G+ ++++ LS+
Sbjct: 272 VMDSVKAIEALYPYIEQELSRGAY--LGHITRHILGIFQGVPGARQWRRHLSE 322
>gi|297565479|ref|YP_003684451.1| yjbN family TIM-barrel protein [Meiothermus silvanus DSM 9946]
gi|296849928|gb|ADH62943.1| TIM-barrel protein, yjbN family [Meiothermus silvanus DSM 9946]
Length = 345
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/310 (44%), Positives = 199/310 (64%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R R +R LYTEM T +AIL GN+ LDF+ EHP+A Q+G ++P
Sbjct: 16 LDWTDRHFRYLVRLCSRGVRLYTEMVTDRAILHGNRPRLLDFDPSEHPVALQLGGSDPAL 75
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I Q WGYDEINLN GCPS RVQ G FGA LM +P LV++C AMR++V++ +T
Sbjct: 76 LAEAARIGQDWGYDEINLNLGCPSERVQGGGFGACLMKEPDLVAECFAAMREAVQLPVTA 135
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+DD+ Y ++ FV ++S G FIVHAR A+L+ L+PK+NR+IP L+Y +VY
Sbjct: 136 KHRLGVDDLEDYGYLARFVEKLASVGVEVFIVHARKAWLQGLSPKENREIPELRYGWVYR 195
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L ++NGG+KT E HL ++DGVMLGR Y++PF++ D ++ +++
Sbjct: 196 LKEDFPHLIFVLNGGVKTLDEAGAHLEHVDGVMLGRAVYEDPFVLEEADRRFFGL--EHR 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R+ + MI Y +L + SI RHML L K +G ++++ LS+ +
Sbjct: 254 -PQRLQVAQAMIAYAEARLEEG--VPLWSIARHMLNLFKGQRGGKRWRRYLSEHAIRPQA 310
Query: 300 NFQFFLNTLN 309
Q L
Sbjct: 311 KAQVLWEALE 320
>gi|77359457|ref|YP_339032.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
TAC125]
gi|76874368|emb|CAI85589.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
TAC125]
Length = 310
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 2 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPQAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM+ V I +TVK
Sbjct: 62 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMGEPQLVADCVAAMKAEVNIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + + GC FI+HAR A+LK L+PK+NR++P L Y VY L
Sbjct: 122 TRIGIDEQDSYEFLCALIEASHNVGCDDFIIHARKAWLKGLSPKENREVPPLDYPRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF+++ D Y ++ +
Sbjct: 182 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFILNEVDEKIYGDIANTQ- 240
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI ++ N + RHMLG+ + G+ F++ LS+
Sbjct: 241 -SRHDVVRSMYSYIEDEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 289
>gi|117919170|ref|YP_868362.1| tRNA-dihydrouridine synthase A [Shewanella sp. ANA-3]
gi|117611502|gb|ABK46956.1| TIM-barrel protein, yjbN family [Shewanella sp. ANA-3]
Length = 334
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 201/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPAEL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ +V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQAVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D + Q +
Sbjct: 202 KRDYPTLNISINGGITSLEQAKTHLQHLDGVMVGREAYQNPYILAQVDQLLCGS--QKAV 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 260 MSREAVIETMLPYIEAHLQAG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 309
>gi|152999313|ref|YP_001364994.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS185]
gi|151363931|gb|ABS06931.1| TIM-barrel protein, yjbN family [Shewanella baltica OS185]
Length = 339
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 27 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ F+ VS+ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 147 TRIGIDEQDSYAFLTQFIDVVSAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ LHL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 207 KRDYPTLNIGINGGVTTLEQAQLHLAQLDGVMMGREAYQNPYILAQVDQVLCGS--QKAV 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 265 ISREDVIEAMLPYIEAHLQSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|445420889|ref|ZP_21435711.1| tRNA dihydrouridine synthase A [Acinetobacter sp. WC-743]
gi|444758456|gb|ELW82956.1| tRNA dihydrouridine synthase A [Acinetobacter sp. WC-743]
Length = 338
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AI+ G LD+N EEHPI Q+G + PK+
Sbjct: 21 MDWTTRDYRFFARLFNPNIILYTEMVTTGAIIYGGANRHLDYNHEEHPIVLQLGGSNPKE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +K+ Q WGY+EINLN GCPS+RVQN GA LM +P LV++CI MR++V+I +TV
Sbjct: 81 LATCSKMAQDWGYNEINLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMRNAVDIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + +FV TV+ GC FIVHAR A L+ L+PK+NR IP L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLNFVDTVAKTGCNNFIVHARIALLQGLSPKENRDIPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+D PEL I INGG+KT E HL ++DGVM+GREAY NP+L++ +L NL
Sbjct: 201 LKQDRPELLIEINGGVKTFAETQEHLKHVDGVMIGREAYHNPYLLA--ELGQLWNL---D 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+++M+ YI +++ +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 256 LPDRFEIMDQMLPYIAKRMQEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTFA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|421556405|ref|ZP_16002321.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 80179]
gi|402337751|gb|EJU72998.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 80179]
Length = 319
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 2 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 62 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 122 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 181
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 182 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 238
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 239 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 298
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 299 DNDGSLILEA 308
>gi|421539547|ref|ZP_15985707.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
gi|402321192|gb|EJU56668.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 93004]
Length = 336
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|254805616|ref|YP_003083837.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha14]
gi|254669158|emb|CBA07852.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha14]
Length = 336
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|160873928|ref|YP_001553244.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS195]
gi|378707171|ref|YP_005272065.1| yjbN family TIM-barrel protein [Shewanella baltica OS678]
gi|160859450|gb|ABX47984.1| TIM-barrel protein, yjbN family [Shewanella baltica OS195]
gi|315266160|gb|ADT93013.1| TIM-barrel protein, yjbN family [Shewanella baltica OS678]
Length = 339
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 27 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ F+ VS+ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 147 TRIGIDEQDSYAFLTQFIDVVSAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ LHL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 207 KRDYPTLNIGINGGVTTLEQAQLHLAQLDGVMMGREAYQNPYILAQVDQVLCGS--QKAV 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 265 ISREDVIEAMLPYIEAHLQSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|416190467|ref|ZP_11615716.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ES14902]
gi|421560509|ref|ZP_16006367.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM2657]
gi|254670181|emb|CBA05275.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis alpha153]
gi|325138888|gb|EGC61438.1| tRNA dihydrouridine synthase A [Neisseria meningitidis ES14902]
gi|402340059|gb|EJU75263.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM2657]
Length = 336
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 205/310 (66%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK +++GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|50086096|ref|YP_047606.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. ADP1]
gi|49532072|emb|CAG69784.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. ADP1]
Length = 341
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/306 (50%), Positives = 202/306 (66%), Gaps = 8/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD++ EHPI Q+G + PK
Sbjct: 24 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDTKRHLDYSHGEHPIVLQLGGSNPKD 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ K+ Q WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+ V+I + V
Sbjct: 84 LAECTKMAQDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIAKMQQVVDIPVHV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SYD + +FV TV+ GC F+VHAR A LK L+PK+NR+IP L+Y VY
Sbjct: 144 KHRIGIDDMQSYDEMLNFVDTVAKTGCHHFVVHARIALLKGLSPKENREIPPLRYEDVYR 203
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+D PEL I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL
Sbjct: 204 LKQDRPELFIEINGGIKTVAETQAHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---D 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+ +M+ YI Q+L +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 259 LPDRFNIMQQMMPYIEQRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTRS 316
Query: 300 NFQFFL 305
+ + L
Sbjct: 317 DIEHAL 322
>gi|374621983|ref|ZP_09694511.1| tRNA-dihydrouridine synthase A [Ectothiorhodospira sp. PHS-1]
gi|373941112|gb|EHQ51657.1| tRNA-dihydrouridine synthase A [Ectothiorhodospira sp. PHS-1]
Length = 313
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R I+R ++LYTEM TT A+L G++ + L F+ EHPIA Q+G ++P+
Sbjct: 2 MDWTDRHCRYFLRLISRRAFLYTEMVTTGALLHGDRDYLLGFDPAEHPIALQLGGSDPQA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDEINLN GCPS+RV +G FGA LM +P LV+DC+ AM+ +V+ +TV
Sbjct: 62 LASCARMGAEAGYDEINLNVGCPSDRVSSGRFGACLMAEPALVADCVAAMQAAVDSPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID ++S + FV TV+ AGC FIVHAR A+L+ L+PKQNR+IP L Y+ V+
Sbjct: 122 KHRIGIDHLDSEAHLHRFVETVAGAGCTRFIVHARKAWLQGLSPKQNREIPPLCYDRVHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ FP LEIIINGG+ ++ L ++DGVMLGREAY NP+L++ D Y +
Sbjct: 182 LKQAFPHLEIIINGGLTRLEDCRTQLAHVDGVMLGREAYHNPWLLAGVDPELYGEPAPAQ 241
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P ++I + + Y+ +L+ + ++TRH+LGL + G+ +++ LS+
Sbjct: 242 SPH--EVIEQFLPYVEARLSEG--VPLQAMTRHILGLFQARPGARAWRRHLSE 290
>gi|292490501|ref|YP_003525940.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
gi|291579096|gb|ADE13553.1| TIM-barrel protein, yjbN family [Nitrosococcus halophilus Nc4]
Length = 340
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRHCR F R I+ ++ LYTEM TT A++ G+++ L ++ EHP+A Q+G + P++
Sbjct: 28 MEWTDRHCRYFLRLISHHALLYTEMVTTGALIHGDRERFLAYHPTEHPLAVQLGGSNPEE 87
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + G+DE+NLN GCPS+RVQ+G FGA LM +P LV++C+ AM +V++ +TV
Sbjct: 88 LAFCARLAEDHGFDEVNLNVGCPSDRVQSGRFGACLMMEPELVAECVAAMAQTVQLPVTV 147
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D+ +SY+ + F+ TVS AGCRTFI+HAR A+L+ L+PK+NR+ P L+Y V
Sbjct: 148 KTRIGVDEQDSYEALTRFINTVSQAGCRTFILHARKAWLQGLSPKENREKPPLRYEVVRA 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP LE++INGGI T +E L +DG+M+GR AY NP+L++ D +Y + +
Sbjct: 208 IKQDFPHLEVVINGGIATLEEAQEQLTLLDGIMIGRAAYHNPYLLAQVDRYFYGDF--HP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+PTR I+ + Y+ +QL ++ ITRH+LGL + G+ +++ LS+
Sbjct: 266 LPTRHGIMEAFLPYVEEQLAQGIY--LSRITRHILGLFQGQPGARAWRRYLSE 316
>gi|433536002|ref|ZP_20492520.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 77221]
gi|432276248|gb|ELL31309.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 77221]
Length = 336
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|418024442|ref|ZP_12663425.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
gi|353536402|gb|EHC05961.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
Length = 334
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ F+ VS+ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 142 TRIGIDEQDSYAFLTQFIDVVSAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ LHL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 202 KRDYPTLNIGINGGVTTLEQAQLHLAQLDGVMMGREAYQNPYILAQVDQVLCGS--QKAV 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 260 ISREDVIEAMLPYIEAHLQSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 309
>gi|121635516|ref|YP_975761.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis FAM18]
gi|385340718|ref|YP_005894590.1| tRNA dihydrouridine synthase A [Neisseria meningitidis G2136]
gi|416176601|ref|ZP_11609712.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M6190]
gi|416200628|ref|ZP_11619688.1| tRNA dihydrouridine synthase A [Neisseria meningitidis 961-5945]
gi|416211980|ref|ZP_11621617.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240013]
gi|433466452|ref|ZP_20423914.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 87255]
gi|433491850|ref|ZP_20448950.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM586]
gi|433493933|ref|ZP_20451008.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM762]
gi|433496113|ref|ZP_20453161.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7089]
gi|433498198|ref|ZP_20455213.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7124]
gi|433500132|ref|ZP_20457122.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM174]
gi|433502381|ref|ZP_20459351.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM126]
gi|120867222|emb|CAM10991.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|325132903|gb|EGC55580.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M6190]
gi|325143034|gb|EGC65386.1| tRNA dihydrouridine synthase A [Neisseria meningitidis 961-5945]
gi|325145143|gb|EGC67425.1| tRNA dihydrouridine synthase A [Neisseria meningitidis M01-240013]
gi|325198962|gb|ADY94418.1| tRNA dihydrouridine synthase A [Neisseria meningitidis G2136]
gi|432204841|gb|ELK60875.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis 87255]
gi|432230251|gb|ELK85928.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM586]
gi|432231724|gb|ELK87382.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM762]
gi|432236479|gb|ELK92086.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7124]
gi|432237219|gb|ELK92817.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis M7089]
gi|432237319|gb|ELK92914.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM174]
gi|432243055|gb|ELK98570.1| tRNA dihydrouridine synthase A family protein [Neisseria
meningitidis NM126]
Length = 336
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYMARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGSLILEA 325
>gi|294649316|ref|ZP_06726749.1| tRNA-dihydrouridine synthase A [Acinetobacter haemolyticus ATCC
19194]
gi|292824795|gb|EFF83565.1| tRNA-dihydrouridine synthase A [Acinetobacter haemolyticus ATCC
19194]
Length = 339
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN EEHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAIIYGGANRHLDFNKEEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPNLVAECIHSMQKAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFIVHARIAILQGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT +E HL ++DGVM+GREAY NP+L++ L +
Sbjct: 201 LKQERPHLTIEINGGIKTLEETQQHLQHVDGVMIGREAYHNPYLLAEM-----GQLWNLE 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI+
Sbjct: 256 APDRFEIMQQMMPYIHQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTIN 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DIE 316
>gi|387890930|ref|YP_006321228.1| tRNA-dihydrouridine synthase A [Escherichia blattae DSM 4481]
gi|414595786|ref|ZP_11445397.1| tRNA-dihydrouridine synthase A [Escherichia blattae NBRC 105725]
gi|386925763|gb|AFJ48717.1| tRNA-dihydrouridine synthase A [Escherichia blattae DSM 4481]
gi|403193257|dbj|GAB83049.1| tRNA-dihydrouridine synthase A [Escherichia blattae NBRC 105725]
Length = 332
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L +N EEHP+A Q+G ++P+ L
Sbjct: 21 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYNEEEHPLALQLGGSDPRAL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A++ ++ GYDEINLN GCPS+RVQNG FGA LM + LV+DC+ AMR+ V + +TVK
Sbjct: 81 AQCARLAEERGYDEINLNVGCPSDRVQNGRFGACLMGEADLVADCVAAMREVVTVPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DFVGTV+ GC TFI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFVGTVAQKGGCETFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + +NGGIK+ E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 201 LKRDFPGLTMSLNGGIKSLAEARAHLEHMDGVMVGREAYQNPGMLAAVDRDIFGTTESCA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSRGCY--LGHITRHMLGLFQGIPGARQWRRHLSE 309
>gi|424743242|ref|ZP_18171555.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-141]
gi|422943503|gb|EKU38519.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-141]
Length = 338
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 203/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD++A+EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYSAQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHTMQKAVNIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMHSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK + P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL
Sbjct: 201 LKLERPNLTIEINGGIKTFAETQTHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---D 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|332531883|ref|ZP_08407767.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038510|gb|EGI74953.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas haloplanktis
ANT/505]
Length = 313
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++PK L
Sbjct: 5 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKAL 64
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM++ V I +TVK
Sbjct: 65 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKNEVNIPVTVK 124
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 125 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 184
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y + +
Sbjct: 185 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDSANTQ- 243
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N I RHMLG+ + G+ F++ LS+
Sbjct: 244 -SRHDVVRSMYDYIEEEMRLG--ANFWHIARHMLGIFQGQPGARGFRRHLSE 292
>gi|336450142|ref|ZP_08620598.1| tRNA dihydrouridine synthase A [Idiomarina sp. A28L]
gi|336282960|gb|EGN76170.1| tRNA dihydrouridine synthase A [Idiomarina sp. A28L]
Length = 327
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 195/293 (66%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHRQI++ + LYTEM TT AI+ K+ L +N EHP+A Q+G + P L
Sbjct: 8 LDWTDRHCRFFHRQISQQALLYTEMVTTGAIIHGKQDFLAYNEAEHPVALQLGGSNPSDL 67
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITV 119
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +PLLV+DCIKAM+D+ I +TV
Sbjct: 68 AACAKLAAERGYDEVNLNVGCPSDRVQNGSFGACLMAEPLLVADCIKAMQDAAPNIPVTV 127
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+GIDD +SY+F++ + + + C I+HAR A+L L+PK+NR++P L Y VY
Sbjct: 128 KTRLGIDDFDSYEFLQALIEPLIAIDCPRVILHARKAWLNGLSPKENREVPPLNYERVYQ 187
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+D+P L++ +NGG+ + E HL +DGVMLGR AY NP+L++ D + +
Sbjct: 188 VKRDYPALQVHLNGGVNSLAEAQEHLQLVDGVMLGRAAYSNPWLLAEVDTLFGA---AET 244
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + +I +MI YI Q + + RHMLGL +N G+ ++++ LS+
Sbjct: 245 APVKEQVIQQMIAYIEQHIEAG--GRFWHVARHMLGLYQNCPGARQWRRTLSE 295
>gi|333374810|ref|ZP_08466644.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
gi|332974563|gb|EGK11483.1| tRNA dihydrouridine synthase A [Kingella kingae ATCC 23330]
Length = 357
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/299 (49%), Positives = 203/299 (67%), Gaps = 5/299 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR++WLYTEM AI+ G+ L N E+P+A Q+G +EP
Sbjct: 35 LDWTDRHYRHMARQITRHTWLYTEMINAGAIVYGDPDRFLQRNECENPVALQLGGSEPTL 94
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LA++A+ ++ YDEINLNCGCPS RVQ G FGA LM LV+DC+ AM+D+V I IT
Sbjct: 95 LAQAAQKAAQYSYDEINLNCGCPSPRVQKGAFGACLMLDVNLVADCLNAMQDAVPAIPIT 154
Query: 119 VKHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
+KHRIGID Y + DFVG++ CRTFIVHARNA+L L+PK+NR+IP L+Y+FV
Sbjct: 155 IKHRIGIDKQTEYQPLADFVGSLHDKTACRTFIVHARNAWLDGLSPKENREIPPLRYDFV 214
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y LK++FP+LEIIINGG++T +I HL ++DGVM+GREAY NP++M ++D +Y
Sbjct: 215 YRLKQEFPDLEIIINGGVQTNTQIAEHLQHVDGVMMGREAYHNPYIMHDWDTLFYGET-- 272
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
PTR I ++ Y QQL+ + + + RH LGL + G+ ++++LS +LL
Sbjct: 273 QPAPTREQITQQLYNYATQQLSRQQGTILRHMVRHYLGLTHGLNGAKIWRRMLSDADLL 331
>gi|229512584|ref|ZP_04402054.1| tRNA dihydrouridine synthase A [Vibrio cholerae TMA 21]
gi|229350366|gb|EEO15316.1| tRNA dihydrouridine synthase A [Vibrio cholerae TMA 21]
Length = 315
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 197/284 (69%), Gaps = 5/284 (1%)
Query: 10 MFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQK 69
+FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK LA AK+ Q+
Sbjct: 10 IFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQE 69
Query: 70 WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK RIGIDD +
Sbjct: 70 RGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQD 129
Query: 130 SYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE 188
SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y +K+DFP L
Sbjct: 130 SYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLT 189
Query: 189 IIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIIN 248
I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + + + R +I+
Sbjct: 190 IAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETPVKKRSQVIH 247
Query: 249 RMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 248 EMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 289
>gi|254786572|ref|YP_003074001.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
gi|237683391|gb|ACR10655.1| tRNA-dihydrouridine synthase A [Teredinibacter turnerae T7901]
Length = 338
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 200/296 (67%), Gaps = 9/296 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK--KHCLDFNAEEHPIAFQVGDNEPK 58
M +DRHCR F R +T+ + LYTEM TT A+L N + L FN+EEHP+A Q+G + P
Sbjct: 20 MEWSDRHCRYFWRLLTKNALLYTEMVTTGALLNNSDVERFLKFNSEEHPLALQLGGSNPD 79
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
+LA+ A + Q+WGYDE+NLNCGCPS+RVQ G GA+LMT+P LV+ C+ AM+ +I +T
Sbjct: 80 ELARCAAMAQQWGYDEVNLNCGCPSDRVQEGKIGAVLMTEPELVAQCVSAMQAECDIPVT 139
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VKHRIG+DD + Y+ ++ FV VS AGC+ FIVHAR A+LK L+PK+NR IP L Y V
Sbjct: 140 VKHRIGVDDQDEYNDLQRFVKVVSEAGCKRFIVHARKAWLKGLSPKENRDIPPLNYERVV 199
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS--NLP 236
LK++ L+I+INGGI T + L+ +DGVM+GREAY NP+L++ D Y N+P
Sbjct: 200 QLKQEHTALDIVINGGITTLSQCSALLSQLDGVMIGREAYHNPYLLAGVDAELYGSDNIP 259
Query: 237 QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR + + ++Y R+Q+ + ++ ++RH+LGL G+ F++ +++
Sbjct: 260 PV---TRDAALEQFVVYCREQIAAG--QKLHHMSRHILGLYAGEYGARTFRRYITE 310
>gi|126175780|ref|YP_001051929.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS155]
gi|386342526|ref|YP_006038892.1| yjbN family TIM-barrel protein [Shewanella baltica OS117]
gi|125998985|gb|ABN63060.1| TIM-barrel protein, yjbN family [Shewanella baltica OS155]
gi|334864927|gb|AEH15398.1| TIM-barrel protein, yjbN family [Shewanella baltica OS117]
Length = 339
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 27 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ F+ VS+ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 147 TRIGIDEQDSYAFLTQFIDVVSAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI T ++ LHL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 207 KRDYPALNIGINGGITTLEQAQLHLAQLDGVMMGREAYQNPYILAQVDQVLCGS--QKAV 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 265 ISREDVIEAMLPYIEAHLLSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|157963384|ref|YP_001503418.1| tRNA-dihydrouridine synthase A [Shewanella pealeana ATCC 700345]
gi|157848384|gb|ABV88883.1| TIM-barrel protein, yjbN family [Shewanella pealeana ATCC 700345]
Length = 328
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 201/293 (68%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 16 LDWTDRHYRYFARLMSSQTLLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 76 AACAKLAAERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAECVTAMKQVVDIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV +AGC FI+HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 136 TRIGIDEQDSYEFLTQFIDTVKAAGCEEFIIHARKAWLQGLSPKENREIPPLDYERVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+D+PEL I INGG+KT +E HL ++DGVM+GREAY+NP++++ D + P
Sbjct: 196 KRDYPELNISINGGVKTLEECQTHLQHLDGVMVGREAYQNPYILAEVDQKLCGIDAP--- 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R ++ +++ YI + L +N I+RH++GL + GS +++ +S+
Sbjct: 253 VMSRDAVLEKLLPYIEKHLQQG--GRLNHISRHIIGLFQGEVGSRVWRRYISE 303
>gi|433677434|ref|ZP_20509415.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430817439|emb|CCP39810.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 339
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 194/293 (66%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A+ LG++ L F+A EHP+A Q+G ++P
Sbjct: 26 MDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLGFDAVEHPLALQLGGSDPAL 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC+ M +V+I +TV
Sbjct: 86 LAQAARIGQGWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVATMVQAVDIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+D + Y+ FV V++AGCR F+VHARNA+L+ L+PK+NR++P L+Y++ Y
Sbjct: 146 KCRLGVDQDDDYEVFLAFVDQVAAAGCRLFVVHARNAWLQGLSPKENREVPPLRYDWAYR 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L++++NGG+ L+ +DGVMLGR AY +P+++ D P+
Sbjct: 206 LKRERPQLQVVLNGGLADVDTARAQLDAVDGVMLGRAAYHDPYVLHRLDAALTGATPR-- 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R +++ + Y+ +L + + I RH+LGL G F+Q+LS+
Sbjct: 264 --PRAELLRALQPYVETRLADG--VALKHIARHLLGLFHGQPGGRAFRQVLSE 312
>gi|359453806|ref|ZP_09243109.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20495]
gi|358049122|dbj|GAA79358.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas sp. BSi20495]
Length = 310
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++PK L
Sbjct: 2 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RV+NG FGA LM +P LV++C+ AM++ V I +TVK
Sbjct: 62 AQCAKLAGERGYDEINLNVGCPSDRVKNGRFGACLMAEPQLVAECVAAMKNEVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 122 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y + +
Sbjct: 182 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDTANTQ- 240
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N I RHMLG+ + G+ F++ LS+
Sbjct: 241 -SRHDVVRSMYSYIEEEMRLG--ANFWHIARHMLGIFQGQPGARGFRRHLSE 289
>gi|345872216|ref|ZP_08824154.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
gi|343919297|gb|EGV30047.1| TIM-barrel protein, yjbN family [Thiorhodococcus drewsii AZ1]
Length = 330
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F R I+R++ LY+EM TT A++ G+ + L F+A EHP+A Q+G ++P
Sbjct: 9 LDWTDRHCRYFLRLISRHTLLYSEMVTTGALIHGDCERHLRFDAAEHPLALQLGGSDPAD 68
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A+ A+I WGYDE+N+N GCPS+RVQNG FGA LM +P LV++C+KAM+D V I +TV
Sbjct: 69 MARCARIGADWGYDEVNINVGCPSDRVQNGRFGACLMAEPGLVAECVKAMKDVVSIPVTV 128
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + DFVG + AGC IVHAR A+L L+P++NR IP L+Y+
Sbjct: 129 KTRIGIDDRDSYEELVDFVGAQAEAGCDAIIVHARKAWLSGLSPRENRDIPPLRYDVALR 188
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP+L + +NGGIKT E L +DGVM+GREAY+NP++++ D + +
Sbjct: 189 LKRDFPDLPMAVNGGIKTLDEAAEFLTQLDGVMIGREAYQNPWILAEADRRIFGD--DRA 246
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P R +++ I Y ++L + +++RH+LGL + G+ +++ +S+
Sbjct: 247 PPDRFQVLDDFIRYAERELAQG--TPLGTMSRHILGLFQAQPGARAWRRQISE 297
>gi|421566775|ref|ZP_16012516.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
gi|402344718|gb|EJU79851.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM3001]
Length = 336
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAMLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGGLILEA 325
>gi|385323486|ref|YP_005877925.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 8013]
gi|421543744|ref|ZP_15989834.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|421545808|ref|ZP_15991867.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|421547875|ref|ZP_15993906.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2781]
gi|421552086|ref|ZP_15998066.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|421558404|ref|ZP_16004286.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
gi|261391873|emb|CAX49332.1| tRNA-dihydrouridine synthase A [Neisseria meningitidis 8013]
gi|402325204|gb|EJU60615.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM183]
gi|402326033|gb|EJU61439.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM140]
gi|402327217|gb|EJU62608.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM2781]
gi|402332634|gb|EJU67958.1| tRNA-dihydrouridine synthase [Neisseria meningitidis NM576]
gi|402338224|gb|EJU73461.1| tRNA-dihydrouridine synthase [Neisseria meningitidis 92045]
Length = 336
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 204/310 (65%), Gaps = 6/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR +WLY+EM AI+ G+K L FN E P+A Q+G ++P
Sbjct: 19 LDWTDRHYRYLARQITRNTWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSD 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+AK + +GY+E+NLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+V I +TV
Sbjct: 79 LAKAAKAAEAYGYNEVNLNCGCPSPRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
KHRIG+D Y V DFVGT+ C+TFIVHARNA+L L+PK+NR +P LKY++VY
Sbjct: 139 KHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVY 198
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++FP LEIIINGGI T + I HL ++DGVM+GREAY NP +M +D +Y +
Sbjct: 199 RLKQEFPGLEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDT--- 255
Query: 239 KIPTR-IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ P D++ + Y + Q+ + + I RH LGLM +KG+ ++++LS LL
Sbjct: 256 RSPIEYADLVQCLYTYSQAQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAMLLK 315
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 316 DNDGGLILEA 325
>gi|418056438|ref|ZP_12694491.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
gi|353209657|gb|EHB75060.1| TIM-barrel protein, yjbN family [Hyphomicrobium denitrificans
1NES1]
Length = 336
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 138/298 (46%), Positives = 200/298 (67%), Gaps = 5/298 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR +T+++ LYTEM T A++ GN+ L F+ EHPIA Q+G +EP K
Sbjct: 15 MDWTDRHCRVFHRHLTKHALLYTEMVTADAVIHGNRARLLGFSDVEHPIALQLGGSEPAK 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I GY+EINLN GCPS+RVQ G FGA LM++P LV+ C+ AMR + +TV
Sbjct: 75 LAEAARIGVDLGYNEINLNVGCPSDRVQEGRFGACLMSEPELVAACVAAMRAHHSVPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGID+ + + +R F+ V+ AGC FIVHAR A+LK L+PK+NR++P L Y VY
Sbjct: 135 KCRIGIDEQDEEEDLRRFIEVVAGAGCTRFIVHARKAWLKGLSPKENREVPPLDYARVYR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK P LEI++NGGI+T + HL+++DGVMLGR AY+NP ++++ D + + +
Sbjct: 195 LKAAHPGLEIVLNGGIETIDDARAHLDHVDGVMLGRAAYQNPAILADVDRVIFGV--EAE 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
PTR +N ++ Y+ Q L+ ++++TRH+LGL F++ LS+ L
Sbjct: 253 SPTRAAALNAIVPYVEQHLSRG--GRLSNVTRHVLGLYHGQPRGKAFRRHLSEGATLA 308
>gi|424789365|ref|ZP_18216029.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422798588|gb|EKU26662.1| Putative dihydrouridine synthase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 339
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 193/293 (65%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A+ LG++ L F+A EHP+A Q+G ++P
Sbjct: 26 MDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLGFDAVEHPLALQLGGSDPAL 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM +V+I +TV
Sbjct: 86 LAQAARIGQAWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVAAMAQAVDIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+D + Y FV V++AGC F+VHARNA+L+ L+PK+NR++P L+Y++ Y
Sbjct: 146 KCRLGVDQDDDYAVFLAFVDQVAAAGCGLFVVHARNAWLQGLSPKENREVPPLRYDWAYR 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L+I++NGG+ L+ +DGVMLGR AY +P+++ D P+
Sbjct: 206 LKRERPQLQIVLNGGLADVDTARAQLDAVDGVMLGRAAYHDPYVLHRLDAALTGATPR-- 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R +++ + Y+ +L + + I RH+LGL G F+Q+LS+
Sbjct: 264 --PRAELLRALRPYVEARLADG--VALKHIARHLLGLFHGQPGGRAFRQVLSE 312
>gi|114564502|ref|YP_752016.1| tRNA-dihydrouridine synthase A [Shewanella frigidimarina NCIMB 400]
gi|114335795|gb|ABI73177.1| TIM-barrel protein, yjbN family protein [Shewanella frigidimarina
NCIMB 400]
Length = 349
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 196/298 (65%), Gaps = 8/298 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL K L +N +EHP+A Q+G + L
Sbjct: 30 LDWTDRHYRYFARLMSSKALLYTEMITTGAILQGKGDYLAYNEQEHPVALQLGGSNAVDL 89
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+ C+ AM+ +I ITVK
Sbjct: 90 AACAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPALVAQCVDAMKQVTDIPITVK 149
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ DF+ TVS+ GC F +HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 150 TRIGIDEQDSYQFLTDFIETVSAQGCSAFTIHARKAWLQGLSPKENREIPPLDYDRVYQL 209
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+ L I INGGIKT +E LHL +DGVM+GREAY+NP++++ D +
Sbjct: 210 KRDYQHLNISINGGIKTLEESKLHLALLDGVMVGREAYQNPYILAQVDQQLCG--LDTAV 267
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS----KPN 294
TR +I +M+ YI L +N ITRHM+GL + + GS +++ LS KPN
Sbjct: 268 ITRQQVIEQMLPYIEAHLAQG--GRLNHITRHMIGLFQGLPGSRGWRRHLSENAHKPN 323
>gi|113971575|ref|YP_735368.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-4]
gi|113886259|gb|ABI40311.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-4]
Length = 335
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++LTDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 22 LDLTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPAEL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 142 TRIGIDEQDSYEFLTYFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL Y+DGVM+GREAY+NP++++ D + +
Sbjct: 202 KRDYPMLNISINGGITSLEQAKTHLQYLDGVMVGREAYQNPYILAQVDQLLCGC--EKAV 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 260 ISREAVIEAMLPYIEAHLQAG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 309
>gi|427419226|ref|ZP_18909409.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
gi|425761939|gb|EKV02792.1| tRNA-U16,U17-dihydrouridine synthase [Leptolyngbya sp. PCC 7375]
Length = 341
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 198/293 (67%), Gaps = 8/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQIT+ + LYTEM T QAIL G++ L F+ E P++ Q+G ++P+
Sbjct: 19 MDRTDRHFRYFMRQITQKTLLYTEMITAQAILHGDRTKLLGFDPLEKPLSLQIGGDDPQL 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK A+I + GYDE+NLN GCPSNRVQ+G FGA LM++P LV+DC+ AM+ V+I +TV
Sbjct: 79 LAKCAQIAEDMGYDEVNLNVGCPSNRVQSGNFGACLMSQPELVADCVAAMQAVVDIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD + Y+ + FV TV++AGC F VHAR A+L+ L+PK NR IP L+Y+ VY
Sbjct: 139 KHRIGIDDCDRYEDMVRFVTTVTAAGCHRFTVHARKAWLQGLSPKDNRTIPPLRYDDVYR 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLN-YYSNLPQY 238
LK++ PEL I INGGIKT +E D HL +D VM+GR AY P+L + D + Y +N P
Sbjct: 199 LKQEHPELWIEINGGIKTLEEADTHLQQVDAVMIGRAAYDTPYLFAVADRDIYAANAPL- 257
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
TR I+ M+ YI + ++SITRHML L GS +K+ L+
Sbjct: 258 ---TRHQIVAAMLPYIARWTEQG--TKLHSITRHMLQLFHGQPGSRAWKRHLT 305
>gi|350421252|ref|XP_003492785.1| PREDICTED: miniconductance mechanosensitive channel-like [Bombus
impatiens]
Length = 769
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +++ + LYTEM TT AIL K L FN +EHP+ Q+G ++P L
Sbjct: 462 LDWTDRHCRYFHRLLSQQALLYTEMVTTGAILYGKGDYLAFNEQEHPVCLQLGGSDPVAL 521
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+ I AMR+ V+I +TVK
Sbjct: 522 AKCAKLAMQRGYDEINLNVGCPSDRVQNGMFGACLMANAELVARSIAAMREVVDIPVTVK 581
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV +TF++HAR A+L L+PK+NR IP L Y VY +
Sbjct: 582 TRIGIDNEDSYEFLCQFIETVLPY-TQTFVIHARKAWLSGLSPKENRDIPPLDYPRVYQI 640
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L + INGGIKT +EI HLNY+DGVM+GREAY+NPFL++ D + + I
Sbjct: 641 KKDYPQLTVAINGGIKTIEEIKTHLNYVDGVMVGREAYQNPFLVTQIDQHIFG--ANTSI 698
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ I ++ YI Q+L +N I RH LGL KG+ ++++ LS+
Sbjct: 699 IDPVAAIRQLYPYIEQELTQG--TQLNHIMRHTLGLFNGRKGAKQWRRYLSE 748
>gi|392536593|ref|ZP_10283730.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas marina mano4]
Length = 324
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 197/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T+++ LYTEM TT AIL + L FN E P+A Q+G ++P+ L
Sbjct: 16 LDWTDRHCRTFHRKMTKHTVLYTEMITTGAILFGRGDYLHFNQHEGPVALQLGGSDPEAL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV+ C+ AM++ V I +TVK
Sbjct: 76 AKCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPELVAQCVAAMKNEVSIPVTVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 136 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+ +L++ INGG+KT ++ HL YIDGVM+GREAY NPF+++ D Y + +
Sbjct: 196 KKDYQQLDLSINGGVKTIEQSLEHLQYIDGVMVGREAYSNPFMLNEVDEKIYGDTANTQ- 254
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR D++ M YI +++ N + RHMLG+ + G+ F++ LS+
Sbjct: 255 -TRHDVVRSMYDYIEEEMRLG--ANFWHVARHMLGIFQGQPGARGFRRHLSE 303
>gi|284929214|ref|YP_003421736.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
gi|284809658|gb|ADB95355.1| tRNA-U16,U17-dihydrouridine synthase [cyanobacterium UCYN-A]
Length = 324
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 212/312 (67%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQIT+++ LYTEM + A+ GNK LDF+++E P++ Q+G N+P
Sbjct: 15 MDRTDRHFRYFIRQITKHTLLYTEMISATAVQNGNKSKLLDFSSDEKPLSLQLGGNDPYT 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + WGYDE+NLN GCPS+RVQNG FGA LM +P LV+ ++ M++SV+I ITV
Sbjct: 75 LAECAIIAEDWGYDEVNLNIGCPSDRVQNGRFGACLMAEPELVAKSVEKMQESVDIPITV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID+ + Y+ ++ FV VS +GC+ FIVHAR A+L+ L+PK+NR IP L+Y VY+
Sbjct: 135 KHRIGIDECDDYESLKYFVRIVSESGCKKFIVHARKAWLQGLSPKENRNIPPLRYQDVYS 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
LKKDFP L I INGGI ++I HL +ID VMLGR AY NP+L++ D ++Y S P
Sbjct: 195 LKKDFPHLTIEINGGITNLEQISHHLQFIDSVMLGRIAYNNPYLLATVDKDFYKSSTTPL 254
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
TR II ++ Y+ ++ ++SITRH+L L I G+ ++K+ +++ +
Sbjct: 255 ----TRYQIIENILPYVEYWASHG--LKLHSITRHLLSLFIGISGTKEWKRYITENSHFI 308
Query: 298 IDNFQFFLNTLN 309
+ + +N L+
Sbjct: 309 GQDSKAIINALS 320
>gi|262377397|ref|ZP_06070620.1| tRNA-dihydrouridine synthase A [Acinetobacter lwoffii SH145]
gi|262307627|gb|EEY88767.1| tRNA-dihydrouridine synthase A [Acinetobacter lwoffii SH145]
Length = 341
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 152/306 (49%), Positives = 202/306 (66%), Gaps = 8/306 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R +YTEM TT AI+ G+ K LDFNAEE PI Q+G + PK
Sbjct: 21 MDWTTKDYRFFARLFNPNVIMYTEMVTTGAIIYGDAKRHLDFNAEEQPIVLQLGGSNPKD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ Q WGY+E+NLN GCPS+RVQN GA LM +P LV++CI MR +V+I +TV
Sbjct: 81 LAICTKMAQDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMRHAVDIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A LK L+PK+NR +P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAKTGCNNFIVHARIALLKGLSPKENRDVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL
Sbjct: 201 LKQERPDLLIEINGGIKTYAETLKHLKHVDGVMIGREAYHNPYLLA--ELGQLWNL---N 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFDIMQQMLPYIAQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLK 313
Query: 300 NFQFFL 305
+ + L
Sbjct: 314 DVETAL 319
>gi|262280981|ref|ZP_06058764.1| tRNA-dihydrouridine synthase A [Acinetobacter calcoaceticus
RUH2202]
gi|262257881|gb|EEY76616.1| tRNA-dihydrouridine synthase A [Acinetobacter calcoaceticus
RUH2202]
Length = 330
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G+ K LD++A+EHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAILFGDAKRHLDYSAQEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY E+NLN GCPS+RVQN GA LM +P LV++CI M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYGEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHTMQKAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV++ GC F+VHAR A LK L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMHSYEEMLHFVDTVAATGCTHFVVHARIAILKGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ L +
Sbjct: 197 LKQERPHLTIEINGGIKTFAETQTHLQHVDGVMIGREAYHNPYLLAEM-----GQLWNLE 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N T+
Sbjct: 252 APDRFEIMEQMLPYIEQRMAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTLG 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|392534629|ref|ZP_10281766.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas arctica A 37-1-2]
Length = 310
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR++T ++ LYTEM TT AIL + L FN E P+A Q+G ++PK L
Sbjct: 2 LDWTDRHCRTFHRKMTIHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKAL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V I +TVK
Sbjct: 62 AQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKSEVSIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+L L+PK+NR++P L Y VY L
Sbjct: 122 TRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKD+P+L++ +NGG+KT ++ HL +IDGVM+GREAY NPF++++ D Y + +
Sbjct: 182 KKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDAANTQ- 240
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D++ M YI +++ N I RHMLG+ + G+ F++ LS+
Sbjct: 241 -SRHDVVRSMYDYIEEEMRLG--ANFWHIARHMLGIFQGQPGARGFRRHLSE 289
>gi|217971989|ref|YP_002356740.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS223]
gi|217497124|gb|ACK45317.1| TIM-barrel protein, yjbN family [Shewanella baltica OS223]
Length = 339
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 27 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ F+ VS+ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 147 TRIGIDEQDSYAFLTQFIDVVSAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ LHL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 207 KRDYPALNIGINGGVTTLEQAQLHLAQLDGVMMGREAYQNPYILAQVDQVLCGS--QKAV 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 265 ISREDVIEVMLPYIEAHLLSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|389809799|ref|ZP_10205496.1| tRNA-dihydrouridine synthase A [Rhodanobacter thiooxydans LCS2]
gi|388441514|gb|EIL97783.1| tRNA-dihydrouridine synthase A [Rhodanobacter thiooxydans LCS2]
Length = 327
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 198/293 (67%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ + LYTEM T+ A++ G + L+ + +EHP+A Q+G +EP +
Sbjct: 18 MDWTDRHCRYFHRLLSPRARLYTEMVTSAALVRGKQLRLLEHSQQEHPLALQLGGSEPHE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+ + GYDEINLN GCPS+RVQ+G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 78 LAQAARFGAEAGYDEINLNVGCPSDRVQSGRFGACLMREPALVADCVKAMRDAVSVPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD ++Y ++ F G + AG +VHAR A+LK L+PK+NR++P L Y VY
Sbjct: 138 KCRIGVDDQDAYADLQQFTGLMLEAGVGVLVVHARKAWLKGLSPKENREVPPLDYERVYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+L ++INGGI T ++ HL +DGVMLGR AY +P+L++ + +
Sbjct: 198 LKREFPQLVVVINGGITTVAQVRAHLTRLDGVMLGRAAYHDPYLLAQLEHALHGE----P 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R ++ R+ Y+ +L + I+RH+LGL + G+ F++ LS+
Sbjct: 254 LPDRDSVLQRLRPYVEAELARGTA--LKHISRHLLGLYQGEPGARAFRRTLSE 304
>gi|167625570|ref|YP_001675864.1| tRNA-dihydrouridine synthase A [Shewanella halifaxensis HAW-EB4]
gi|167355592|gb|ABZ78205.1| TIM-barrel protein, yjbN family [Shewanella halifaxensis HAW-EB4]
Length = 328
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 199/293 (67%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 16 LDWTDRHYRYFARLMSSQVLLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPADL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I ITVK
Sbjct: 76 AACAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVSAMKQVVDIPITVK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV +AGC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 136 TRIGIDEQDSYEFLTQFIDTVKAAGCEEFTIHARKAWLQGLSPKENREIPPLDYERVYQL 195
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS-NLPQYK 239
K+D+P+L I INGGIKT +E HL ++DGVM+GREAY+NP++++ D + P
Sbjct: 196 KRDYPQLNISINGGIKTLEECQTHLQHLDGVMVGREAYQNPYILAEVDQKLCGIDTP--- 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R ++ +++ YI + L +N ITRH++GL + GS +++ LS+
Sbjct: 253 VISRDAVLEKLLPYIEKHLQQG--GRLNHITRHIIGLYQGEVGSRVWRRYLSE 303
>gi|226952909|ref|ZP_03823373.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. ATCC 27244]
gi|226836354|gb|EEH68737.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. ATCC 27244]
Length = 343
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN EEHPI Q+G + P++
Sbjct: 25 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAIIYGGANRHLDFNKEEHPIVLQLGGSNPQE 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 85 LATCTKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPNLVAECIHSMQKAVSIPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR++P L+Y+ VY
Sbjct: 145 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFIVHARIAILQGLSPKENREVPPLRYDDVYR 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ L +
Sbjct: 205 LKQERPHLTIEINGGIKTFDETQQHLQHVDGVMIGREAYHNPYLLAEM-----GQLWNLE 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI+
Sbjct: 260 APDRFEIMQQMMPYIHQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTIN 317
Query: 300 NFQ 302
+ +
Sbjct: 318 DIE 320
>gi|406035817|ref|ZP_11043181.1| tRNA-dihydrouridine synthase A [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 338
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 202/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN EEHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAIIYGGANRHLDFNKEEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFIVHARIAILQGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPHLTIEINGGIKTFTETQQHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI
Sbjct: 256 APNRFDIMQQMMPYIHQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTIT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DIE 316
>gi|373950890|ref|ZP_09610851.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
gi|386323276|ref|YP_006019393.1| yjbN family TIM-barrel protein [Shewanella baltica BA175]
gi|333817421|gb|AEG10087.1| TIM-barrel protein, yjbN family [Shewanella baltica BA175]
gi|373887490|gb|EHQ16382.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
Length = 339
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P L
Sbjct: 27 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPVDL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ ++I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVIDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ F+ VS+ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 147 TRIGIDEQDSYAFLTQFIDVVSAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ LHL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 207 KRDYPTLNIGINGGVTTLEQAQLHLAQLDGVMMGREAYQNPYILAQVDQVLCGS--QKAV 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 265 ISREDVIEAMLPYIEAHLLSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|389798660|ref|ZP_10201673.1| tRNA dihydrouridine synthase A [Rhodanobacter sp. 116-2]
gi|388444576|gb|EIM00678.1| tRNA dihydrouridine synthase A [Rhodanobacter sp. 116-2]
Length = 328
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 198/293 (67%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ + LYTEM T+ A++ G + L+ + +EHP+A Q+G +EP +
Sbjct: 19 MDWTDRHCRYFHRLLSPRARLYTEMVTSAALVRGKQLRLLEHSQQEHPLALQLGGSEPYE 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ + GYDEINLN GCPS+RVQ+G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 79 LAQAARLGAEAGYDEINLNVGCPSDRVQSGRFGACLMYEPALVADCVKAMRDAVSVPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD + Y ++ F + AG +VHAR A+LK L+PK+NR++P L Y VY
Sbjct: 139 KCRIGVDDQDDYAGLQQFTELMLEAGVEVLVVHARKAWLKGLSPKENREVPPLDYERVYR 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FPEL ++INGGI T ++ HL +DGVMLGR AY +P+L++ + +
Sbjct: 199 LKREFPELVVVINGGISTVDQVRSHLAQLDGVMLGRAAYHDPYLLAQLEHALHDE----P 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R D++ R+ Y+ +L + I+RH+LGL + G+ F++ LS+
Sbjct: 255 LPRREDVLQRLRPYVEAELARGTA--LKHISRHLLGLYQGEPGARAFRRTLSE 305
>gi|332284552|ref|YP_004416463.1| tRNA-dihydrouridine synthase A [Pusillimonas sp. T7-7]
gi|330428505|gb|AEC19839.1| tRNA-dihydrouridine synthase A [Pusillimonas sp. T7-7]
Length = 334
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 142/297 (47%), Positives = 190/297 (63%), Gaps = 6/297 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TD+HCR FHR + + LYTEM TT A++ G LDF+ E P+A Q+G +EP+
Sbjct: 19 IDVTDKHCRYFHRLLAPQARLYTEMITTGALMHGKVARHLDFDPAEEPVALQLGGSEPEA 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+SAK+ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DCIKAM+D+V + +TV
Sbjct: 79 LAESAKLGQQWGYDEINLNCGCPSERVQRGAFGACLMAEPQLVADCIKAMQDAVTVPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D +SY FVRDFVG + + GCR FIVHARNA LK L+PK NR+IP L+Y+
Sbjct: 139 KHRLGLDYDDSYGFVRDFVGVIHNTGCRVFIVHARNAVLKGLSPKDNREIPPLRYDAAAR 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+ ++NGGI + + DGVMLGR A+ P ++S ++ +
Sbjct: 199 LKADFPDSVFVLNGGIAQASQALELMRQFDGVMLGRAAWHQPGVLSEISRAMAPDVAPLE 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
P + II M Y Q+ + I R MLG M GS +++ LS LL
Sbjct: 259 -PAQ--IIQAMQTYAAGQVEQG--VPLRMIVRPMLGWMSGRAGSRHWRRTLSDAALL 310
>gi|357418823|ref|YP_004931843.1| tRNA-dihydrouridine synthase A [Pseudoxanthomonas spadix BD-a59]
gi|355336401|gb|AER57802.1| tRNA-dihydrouridine synthase A [Pseudoxanthomonas spadix BD-a59]
Length = 315
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 198/293 (67%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A+L G+++ L F+A EHP+A Q+G +EP++
Sbjct: 2 MDWTDRHCRVFHRLLAPTALLYTEMVHANAVLEGDRERLLGFDALEHPVALQLGGSEPER 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA + ++ +GYDE+NLN GCPS+RVQ G FGA LM +PLLV++CI AM ++ I +TV
Sbjct: 62 LAAATRVGAAYGYDEVNLNVGCPSDRVQAGRFGACLMKEPLLVAECIAAMCEAAAIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+D++ Y F+ TV++AGC TFIVHAR A+L+ L+PK+NR+IP L+Y + Y
Sbjct: 122 KCRLGVDELEDYAHFAGFIDTVAAAGCDTFIVHARKAWLEGLSPKENREIPPLRYEWAYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L I +NGGI T + ID HL +D VMLGR AY +P+ + +++L
Sbjct: 182 LKRERPQLTIWLNGGITTLEAIDAHLGQVDAVMLGRSAYHDPYFLH----RAHAHLAGTP 237
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R++++ Y++ L+ + +TRH+LGL G +F+Q+LS+
Sbjct: 238 VRSRVELLRAFGPYVQAALDRG--VALKHMTRHVLGLFAGQPGGRQFRQVLSE 288
>gi|392307186|ref|ZP_10269720.1| tRNA-dihydrouridine synthase A [Pseudoalteromonas citrea NCIMB
1889]
Length = 337
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 194/292 (66%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR FHR++T+++ LYTEM TT AIL K L F E P+A Q+G ++PK L
Sbjct: 29 LDWTDKHCRTFHRKLTKHAVLYTEMITTGAILFGKGDYLAFGEHEMPVALQLGGSDPKAL 88
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK ++GY+EINLN GCPS+RVQNG FGA LM +P LV++C+ AM+ VEI +TVK
Sbjct: 89 AECAKRAGEYGYNEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKAEVEIPVTVK 148
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ + GC FI+HAR A+LK L+PK+NR++P L Y VY L
Sbjct: 149 TRIGIDEQDSYEFLTALIEASQQVGCDDFIIHARKAWLKGLSPKENREVPPLDYPRVYQL 208
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
KKDF +L I INGG+KT + HL ++DGVM+GREAY NP+++S D Y P +
Sbjct: 209 KKDFADLHISINGGVKTLDDCQQHLAHLDGVMIGREAYSNPYMLSQVDELLYGE-PAF-T 266
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +++ M Y Q+ N I RHMLG+ ++ G F++ LS+
Sbjct: 267 QSRHEVVRSMYDYFEVQMTQG--ANFWHIARHMLGIFQSQPGGRAFRRHLSE 316
>gi|87122404|ref|ZP_01078285.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
gi|86162379|gb|EAQ63663.1| hypothetical protein MED121_00605 [Marinomonas sp. MED121]
Length = 349
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 198/294 (67%), Gaps = 6/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
++ T R+F R +T + LYTEM TT A+L N + L F EHPIA Q+G ++
Sbjct: 27 LDWTTSDYRVFARALTTETLLYTEMVTTGALLKGDNPERFLRFEDIEHPIALQLGGSDAN 86
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
LA+ AK+ +K+GYDE+NLN GCPS +VQ+ GAILM P V D +KAM+D+ I +T
Sbjct: 87 ALAQCAKLAEKFGYDEVNLNAGCPSYKVQHSLIGAILMAHPEKVKDAMKAMQDACSIPVT 146
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
+KHRIG+DD Y VRDF+G V++ G +TFIVHARNA L L+PKQNR+IP LKY+FVY
Sbjct: 147 LKHRIGLDDQQDYSIVRDFIGDVATTGTQTFIVHARNAILAGLSPKQNREIPPLKYDFVY 206
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LKKDFP+LEIIINGGIKT E + HL ++DGVM+GREAY NP+++S D + Q
Sbjct: 207 QLKKDFPDLEIIINGGIKTLDECEHHLKHLDGVMVGREAYNNPWILSQVDSRLFDKEDQ- 265
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ RI + + ++ +LNN + ++ +TRH++G+ G +F++ LS+
Sbjct: 266 -VQDRIQALRNFVPFVEHRLNNG--ERLSHLTRHIMGIFLGQPGGKQFRRYLSE 316
>gi|425744217|ref|ZP_18862277.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-323]
gi|425491605|gb|EKU57886.1| tRNA dihydrouridine synthase A [Acinetobacter baumannii WC-323]
Length = 334
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 198/303 (65%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN EEHPI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAIIYGGANRHLDFNKEEHPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +K+ + WGYDE+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCSKMAEDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPQLVAECIHSMQKAVSIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR +P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFIVHARIAILQGLSPKENRDVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK + P L I INGGIKT E HL ++DGVM+GREAY NP+L++ L +
Sbjct: 197 LKLERPHLTIEINGGIKTFAETQQHLQHVDGVMIGREAYHNPYLLAEM-----GQLWNLE 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI
Sbjct: 252 APDRFEIMQQMMPYIHQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTIT 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DIE 312
>gi|406937212|gb|EKD70739.1| hypothetical protein ACD_46C00424G0003 [uncultured bacterium]
Length = 317
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
MN TDRH R F R I + LYTEM TT A++ G+ L F+ EHP+A Q+G +EP K
Sbjct: 12 MNCTDRHNRYFLRLIAPHVLLYTEMITTGALIHGDCTRFLAFDPLEHPVALQLGGSEPDK 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ +++GYDEINLN GCPSNRV+ G FGA LM +P LV++C+ AM +V+I +TV
Sbjct: 72 LAYCARLGEEFGYDEINLNVGCPSNRVKAGRFGACLMLEPDLVAECVAAMHSAVKIPVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D +SY + F+ V+ AGC F++HAR A+L ++PKQNR IP L+Y+ V N
Sbjct: 132 KCRIGVDQQDSYAALVQFIEKVAQAGCHIFVIHARKAWLTGISPKQNRDIPPLQYDIVKN 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP + II+NGGIKT +I HL Y+DGVM+GREAY NP+ ++ + +++
Sbjct: 192 IKQDFPHVSIIMNGGIKTLHDIQRHLQYVDGVMIGREAYANPYFLAAIEEQFFAK----S 247
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ TR II + I YI+ QL NK+K ++SITRH+LGL + KG+ +++ LS+
Sbjct: 248 VLTRHTIIKKFIPYIQVQL-RNKVK-LSSITRHILGLYQGQKGARIWRRYLSE 298
>gi|375105977|ref|ZP_09752238.1| tRNA-dihydrouridine synthase [Burkholderiales bacterium JOSHI_001]
gi|374666708|gb|EHR71493.1| tRNA-dihydrouridine synthase [Burkholderiales bacterium JOSHI_001]
Length = 338
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 193/301 (64%), Gaps = 18/301 (5%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR HR ++ ++ LYTEM TT A+L G+ LDF+AEEHP+A Q+G +EP
Sbjct: 18 LDWTDRHCRFLHRLLSPHARLYTEMVTTGALLHGDLPRHLDFSAEEHPVALQLGGSEPAD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-----E 114
LA K+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV DC+ AM ++
Sbjct: 78 LAACVKLAQRWGYDEVNLNCGCPSERVQRGAFGACLMAEPGLVRDCVAAMVEAAAASPRP 137
Query: 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 174
+ +TVKHRIGID + SYDFVRDFVGTV+ GC+ FIVHARNA+L+ L+PK NR+IP L++
Sbjct: 138 LPVTVKHRIGIDRVESYDFVRDFVGTVAEGGCQVFIVHARNAWLQGLSPKDNREIPPLRH 197
Query: 175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 234
FV LK+DFP+ ++NGG+ + HL +DGVM+GR AY+ P ++ +D +
Sbjct: 198 AFVERLKQDFPQGVFVLNGGLADVAAVQQHLRVLDGVMIGRHAYQQPAKLAAWDAALFGG 257
Query: 235 LPQYKIPTRIDIINRMILYI----RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
+D+ Y+ RQQ + + + RHMLGL G+ ++Q+
Sbjct: 258 A------GGLDVDAAEAGYVAYMARQQAAHGTPWAL--MARHMLGLRHGQPGARLWRQVW 309
Query: 291 S 291
S
Sbjct: 310 S 310
>gi|262380225|ref|ZP_06073380.1| tRNA-dihydrouridine synthase A [Acinetobacter radioresistens SH164]
gi|262298419|gb|EEY86333.1| tRNA-dihydrouridine synthase A [Acinetobacter radioresistens SH164]
Length = 335
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AIL G+ L++N EEHP+ Q+G + PK
Sbjct: 17 MDWTTRDYRFFARLFNPNMILYTEMVTTGAILFGDAGRHLNYNQEEHPVVLQLGGSSPKD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI AMR +V I +TV
Sbjct: 77 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPELVAECISAMRQAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAKTGCNNFIVHARIALLQGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L I INGG+KT E HL ++DGVM+GREAY NP+L++ +L NLP
Sbjct: 197 LKQERPDLTIEINGGVKTLAETQEHLKHVDGVMIGREAYHNPYLLA--ELGELWNLP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+ +M+ YI ++L ++ ITRH+LGL + + G+ K++Q LS N T
Sbjct: 252 MPDRFEIMEQMLPYIAKRLEEG--APLSVITRHILGLFQYLPGARKWRQALSGGNAKTYA 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|262369896|ref|ZP_06063223.1| tRNA-dihydrouridine synthase A [Acinetobacter johnsonii SH046]
gi|262314935|gb|EEY95975.1| tRNA-dihydrouridine synthase A [Acinetobacter johnsonii SH046]
Length = 340
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 199/303 (65%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G LD+N EEHPI Q+G + PK
Sbjct: 21 MDWTTKDYRFFARLFNPNVILYTEMVTTGAILFGGANRHLDYNNEEHPIVLQLGGSNPKD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ Q WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+++VEI +TV
Sbjct: 81 LATCTKMAQDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMQNAVEIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR IP L+Y VY
Sbjct: 141 KHRIGIDDMHSYEEMLHFVDTVTKTGCDNFIVHARIALLQGLSPKENRDIPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ L
Sbjct: 201 LKQERPNLLIEINGGIKTFAETQEHLKHVDGVMIGREAYHNPYLLAEL-----GQLWNLD 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +II++M+ YI +++ + +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 256 LPDRFEIIDQMLPYIAKRMAEDAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTFA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|406039919|ref|ZP_11047274.1| tRNA-dihydrouridine synthase A [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 338
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/303 (47%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AI+ G+ K LDFN++EHP+ Q+G + P+
Sbjct: 21 MDWTTRDYRFFARLFNPNIVLYTEMVTTGAIIHGDAKRHLDFNSQEHPLVLQLGGSNPQD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYNEVNLNIGCPSDRVQNNKIGACLMAEPNLVAECIDQMQKTVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SYD + FV T+++ GC F+VHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYDEMLHFVDTIAATGCTHFVVHARIAILQGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT +E HL Y+DGVM+GREAY NP+L++ F + NL
Sbjct: 201 LKRERPNLTIEINGGIKTFEETQQHLQYVDGVMIGREAYHNPYLLAEF--GQFWNL---D 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+ +M+ YI ++L +I ITRH+LGL +N+ G+ K++Q LS N ++
Sbjct: 256 LPDRFNIMQQMMPYIEKRLAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKSLT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DIE 316
>gi|255320921|ref|ZP_05362095.1| tRNA-dihydrouridine synthase A [Acinetobacter radioresistens SK82]
gi|255302090|gb|EET81333.1| tRNA-dihydrouridine synthase A [Acinetobacter radioresistens SK82]
Length = 340
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AIL G+ L++N EEHP+ Q+G + PK
Sbjct: 22 MDWTTRDYRFFARLFNPNMILYTEMVTTGAILFGDAGRHLNYNQEEHPVVLQLGGSSPKD 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI AMR +V I +TV
Sbjct: 82 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPELVAECISAMRQAVNIPVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 142 KHRIGIDDMQSYEEMLHFVDTVAKTGCNNFIVHARIALLQGLSPKENREVPPLRYEDVYR 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L I INGG+KT E HL ++DGVM+GREAY NP+L++ +L NLP
Sbjct: 202 LKQERPDLTIEINGGVKTLAETQEHLKHVDGVMIGREAYHNPYLLA--ELGELWNLP--- 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+ +M+ YI ++L ++ ITRH+LGL + + G+ K++Q LS N T
Sbjct: 257 MPDRFEIMEQMLPYIAKRLEEG--APLSVITRHILGLFQYLPGARKWRQALSGGNAKTYA 314
Query: 300 NFQ 302
+ +
Sbjct: 315 DVE 317
>gi|336312633|ref|ZP_08567580.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
gi|335863806|gb|EGM68931.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
Length = 339
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 27 LDWTDRHYRYFARLMSTNALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPSEL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L L+PK+NR+IP L Y+ Y L
Sbjct: 147 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLSGLSPKENREIPPLDYDRAYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D P+ I
Sbjct: 207 KRDYPTLNISINGGITSLEQAKTHLQHLDGVMMGREAYQNPYILAQVD-QMLCGSPKAVI 265
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L + +N ITRHM+GL + + G+ +++ LS+
Sbjct: 266 -SREAVIETMLPYIEAHLQSG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|381197101|ref|ZP_09904442.1| tRNA-dihydrouridine synthase A [Acinetobacter lwoffii WJ10621]
Length = 340
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 198/303 (65%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G LD+N EEHPI Q+G + PK
Sbjct: 21 MDWTTKDYRFFARLFNPNVILYTEMVTTGAILFGGANRHLDYNNEEHPIVLQLGGSNPKD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ Q WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+++VEI +TV
Sbjct: 81 LATCTKMAQDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMQNAVEIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR IP L+Y VY
Sbjct: 141 KHRIGIDDMHSYEEMLHFVDTVAKTGCDNFIVHARIALLQGLSPKENRDIPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DGVM+GREAY NP+L++ L
Sbjct: 201 LKQERPNLLIEINGGIKTFAETQEHLKHVDGVMIGREAYHNPYLLAEI-----GQLWNLD 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +II++M+ YI +++ +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 256 LPDRFEIIDQMLPYIAKRMQEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTFA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|395651166|ref|ZP_10439016.1| tRNA-dihydrouridine synthase A [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 311
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 197/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R +++++ LYTEM TT AIL G+ + L N EHP+A Q+G + P
Sbjct: 1 MDWTDRHCRFFLRLLSKHALLYTEMVTTGAILHGDHERFLRHNDAEHPLALQLGGSVPAD 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV++C+KAMRD+V I +TV
Sbjct: 61 LAACARMAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVAECVKAMRDAVSIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFV V AGC +F VHAR A L+ L+PK+NR IP L+Y+
Sbjct: 121 KHRIGINGRDSYAQLCDFVEQVKDAGCISFTVHARIAILEGLSPKENRDIPPLRYDVAAQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFPELEII+NGGIKT ++ HL DGVMLGREAY NP+L++ D + +
Sbjct: 181 LKRDFPELEIILNGGIKTLEQCQEHLQTFDGVMLGREAYHNPYLLAQVDRQLFGS--TQP 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + + ++ YI + L +++ ITRH+LGL G+ KF+Q+LS
Sbjct: 239 VVSRAEALAQLRPYIAEHLATG--GSMHHITRHVLGLGTGFPGARKFRQLLS 288
>gi|24375400|ref|NP_719443.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
gi|38604868|sp|Q8EAJ0.1|DUSA_SHEON RecName: Full=tRNA-dihydrouridine synthase A
gi|24350234|gb|AAN56887.1| tRNA2fMet-dihydrouridine21 synthase DusA [Shewanella oneidensis
MR-1]
Length = 335
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVEL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D + +
Sbjct: 202 KRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGSTK--AV 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 260 MSREAVIEAMLPYIEAHLQVG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 309
>gi|443321686|ref|ZP_21050730.1| tRNA dihydrouridine synthase A [Gloeocapsa sp. PCC 73106]
gi|442788598|gb|ELR98287.1| tRNA dihydrouridine synthase A [Gloeocapsa sp. PCC 73106]
Length = 325
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 195/293 (66%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F R ITR++ LYTEM TT AI+ G++ L F+ E P++ Q+G + P++
Sbjct: 2 MDRTDRHFRYFIRLITRHTLLYTEMITTGAIIYGDRSKFLGFDLAEKPLSLQLGGDNPEQ 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A+I Q WGYDE+NLN GCPS RVQ+G FGA LM P LV+ ++ M +V I +TV
Sbjct: 62 LAACARIAQDWGYDEVNLNVGCPSPRVQSGNFGACLMLNPSLVATAVEKMTKAVTIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD + Y+ + FV TV+ AGC F VHAR A+LK L+PK+NR IP L+Y+ V+
Sbjct: 122 KHRIGVDDRDRYEDLTQFVQTVAEAGCSRFTVHARKAWLKGLSPKENRSIPPLRYDLVHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGI EI L +D VM+GR AY +P+ ++ D Y QYK
Sbjct: 182 LKRDFPHLYIEINGGITKLSEIQEQLELVDAVMIGRAAYDHPYFLATVDREIYGA--QYK 239
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR +I+ +M+ YI LN+ ++NSI+RH+L L GS +K+ +S+
Sbjct: 240 PPTRPEIVAQMLPYIENCLNSG--FSLNSISRHLLHLFTGEPGSRAWKRYISE 290
>gi|421854972|ref|ZP_16287355.1| tRNA-dihydrouridine synthase A [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403189633|dbj|GAB73556.1| tRNA-dihydrouridine synthase A [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 335
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 200/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AIL G+ L++N EEHP+ Q+G + PK
Sbjct: 17 MDWTTRDYRFFARLFNPNVILYTEMVTTGAILFGDAGRHLNYNQEEHPVVLQLGGSNPKD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI AMR +V I +TV
Sbjct: 77 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPELVAECISAMRQAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMQSYEEMLHFVDTVAKTGCNNFIVHARIALLQGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGG+KT E HL ++DGVM+GREAY NP+L++ +L NLP
Sbjct: 197 LKQERPHLTIEINGGVKTLAETQEHLKHVDGVMIGREAYHNPYLLA--ELGELWNLP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+ +M+ YI ++L ++ ITRH+LGL + + G+ K++Q LS N T
Sbjct: 252 MPDRFEIMEQMLPYIAKRLEEG--APLSVITRHILGLFQYLPGARKWRQALSGGNAKTYA 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|67921570|ref|ZP_00515088.1| Dihydrouridine synthase TIM-barrel protein yjbN [Crocosphaera
watsonii WH 8501]
gi|67856682|gb|EAM51923.1| Dihydrouridine synthase TIM-barrel protein yjbN [Crocosphaera
watsonii WH 8501]
Length = 334
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 203/310 (65%), Gaps = 7/310 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R RQITR++ LYTEM + AI G++ LDF+ EE P++ Q+G + P++
Sbjct: 10 MDYTDRHFRYLMRQITRHTLLYTEMIVSAAIKHGDRPKLLDFSPEEKPLSLQLGGDNPQE 69
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + WGYDEINLN GCPS+RVQ+G FGA LM KP LV+ C++ M+ V I +TV
Sbjct: 70 LAECAIIAEDWGYDEINLNVGCPSDRVQSGHFGACLMAKPELVAQCVQKMQQGVNIPVTV 129
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + FV V+ AGC+ F +HAR A+LK L+PK+NR IP L+Y VY
Sbjct: 130 KQRIGIDDQDSYEEMARFVAIVAEAGCQRFTIHARKAWLKGLSPKENRNIPPLRYQDVYR 189
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGI +++D HL +D VM+GR AY NP+L + D + Y +
Sbjct: 190 LKQDFPHLLIEINGGITNLEQVDNHLKIVDAVMIGRAAYDNPYLFATVDRDIYQ---EDI 246
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
IP TR +II +M+ YI ++ ++ I+RH+L + I G+ +K+ +S+ L
Sbjct: 247 IPATRHEIIEKMLPYIDHWVSRG--HKLHRISRHLLAMFAGIPGTKAWKRYISENAHLPG 304
Query: 299 DNFQFFLNTL 308
+ Q + L
Sbjct: 305 ADSQVIIEAL 314
>gi|28869329|ref|NP_791948.1| yjbN family TIM-barrel protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|38604776|sp|Q884G7.1|DUSA_PSESM RecName: Full=tRNA-dihydrouridine synthase A
gi|28852570|gb|AAO55643.1| TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 336
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 26 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAG 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 146 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 206 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSV--AP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 264 VISRHAALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 313
>gi|434387108|ref|YP_007097719.1| tRNA dihydrouridine synthase A [Chamaesiphon minutus PCC 6605]
gi|428018098|gb|AFY94192.1| tRNA dihydrouridine synthase A [Chamaesiphon minutus PCC 6605]
Length = 311
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/299 (47%), Positives = 201/299 (67%), Gaps = 9/299 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQI+R + LYTEM T+ AIL G+K L F EHP+A Q+G + P+
Sbjct: 2 MDRTDRHCRYFLRQISRRTLLYTEMVTSMAILHGDKYKLLGFARSEHPLALQIGGDNPRD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I +GYDE+NLN GCPS+RVQNG FGA LM +P V++CI AM D+ +I +T+
Sbjct: 62 LAECAQIAADFGYDEVNLNVGCPSSRVQNGNFGACLMLQPERVAECIAAMIDATKIPVTI 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D+++SY+ + FV VS GC+ F +HAR A+L+ L+PK+NR+IP L+Y V+
Sbjct: 122 KHRIGVDEVDSYEDLVKFVSIVSQTGCQRFSIHARKAWLQGLSPKENREIPPLRYEDVHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS--NLPQ 237
LK++FP L I INGG +++ L +D VM+GR Y NP+L++N D Y LP
Sbjct: 182 LKQEFPHLSIEINGGFSNLEQVQTQLQIVDAVMIGRAIYDNPYLLANVDREIYGEDTLP- 240
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
P+R I+ M+ YI + +K +NSITRHML L GS +K+I+++ ++L
Sbjct: 241 ---PSRDRIVTNMLSYIEEW--TSKGLKLNSITRHMLQLFHGQPGSRIWKRIITERSVL 294
>gi|386312475|ref|YP_006008640.1| yjbN family TIM-barrel protein [Shewanella putrefaciens 200]
gi|319425100|gb|ADV53174.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens 200]
Length = 343
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P+ L
Sbjct: 31 LDWTDRHYRYFARLMSAKALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPQDL 90
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 91 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 150
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ V++ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 151 TRIGIDEQDSYEFLTYFIDIVNAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 210
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ HL+ +DGVM+GREAY+NP++++ D + Q +
Sbjct: 211 KRDYPVLNISINGGVTTLEQAQGHLSQLDGVMMGREAYQNPYILARVDQVLCGS--QRAV 268
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 269 ISREDVIEAMLPYIEAHLQAG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 318
>gi|156972389|ref|YP_001443296.1| tRNA-dihydrouridine synthase A [Vibrio harveyi ATCC BAA-1116]
gi|156523983|gb|ABU69069.1| hypothetical protein VIBHAR_00009 [Vibrio harveyi ATCC BAA-1116]
Length = 300
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/280 (50%), Positives = 192/280 (68%), Gaps = 7/280 (2%)
Query: 15 ITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDE 74
+T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P LA AK+ Q+ GYDE
Sbjct: 1 MTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPADLATCAKLAQERGYDE 60
Query: 75 INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134
INLN GCPS+RVQNG FGA LM +P LV+DC+ AM+D V++ +TVK RIGIDD +SY+F+
Sbjct: 61 INLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKDVVDVPVTVKTRIGIDDQDSYEFL 120
Query: 135 RDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193
DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y LKKDF L I ING
Sbjct: 121 TDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAING 180
Query: 194 GIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYKIPTRIDIINRMIL 252
G+K +E HL Y+DGVM+GREAY++P+L+++ D + SN P + R +I+ M
Sbjct: 181 GVKLLEEAKEHLQYLDGVMIGREAYQSPYLLASVDQELFGSNTP---VKKRSEIVEEMYP 237
Query: 253 YIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
YI QL K + ITRHMLGL +++ G+ ++++ +S+
Sbjct: 238 YIEAQL--AKGAYLGHITRHMLGLFQSMPGARQWRRHISE 275
>gi|389709409|ref|ZP_10186802.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. HA]
gi|388610210|gb|EIM39339.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. HA]
Length = 341
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G+ K LDFN +E P+ Q+G + PK
Sbjct: 21 MDWTTKDYRFFARLFNPNIILYTEMVTTGAIIHGDAKRHLDFNQQEQPVVLQLGGSNPKD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +K+ Q WGY+E+NLN GCPS+RVQN GA LM +P LV++CI MR++V+I +TV
Sbjct: 81 LATCSKMAQDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIGEMRNAVDIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAKTGCNNFIVHARIALLQGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ PEL I INGGIKT E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPELLIEINGGIKTYAETVEHLKHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI Q++ +I I+RH+LGL +N+ G+ K++Q LS N T+
Sbjct: 256 APDRFEIMQQMMPYIAQRMAEGAPLSI--ISRHILGLFQNLPGARKWRQALSGGNAKTLK 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|357405395|ref|YP_004917319.1| tRNA-dihydrouridine synthase A [Methylomicrobium alcaliphilum 20Z]
gi|351718060|emb|CCE23725.1| tRNA-dihydrouridine synthase A [Methylomicrobium alcaliphilum 20Z]
Length = 347
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 208/293 (70%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR F+R ++++++LYTEM TT A+L G++ L ++ +E+P+A Q+G + P +
Sbjct: 38 LDWTDRHCRYFYRLMSKHAYLYTEMITTGALLHGDRDRFLQYHPDENPLACQLGGSHPLE 97
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+++ +GY E+NLN GCPS+RVQNG FGA LM P LV++C+ AM V I +TV
Sbjct: 98 LAACAKMVEDYGYHEVNLNVGCPSDRVQNGRFGACLMATPELVAECLSAMNRVVSIPVTV 157
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + F+ VS AGCR FI+HAR A+L L+PK+NR+IP L+Y+ VY
Sbjct: 158 KCRIGIDDQDSYEALHRFITLVSEAGCRVFIIHARKAWLSGLSPKENREIPPLRYDVVYR 217
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP+LEII+NGG+++ + + + ++GVM+GRE Y+NP+L++ D +Y + +
Sbjct: 218 IKRDFPKLEIILNGGVRSLDQALVINDEVNGVMVGREVYQNPYLLAGVDELFYRDF--HA 275
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I +R +I+ ++ Y+ +QL + SI RH+LGL + G+ +++ +S+
Sbjct: 276 IKSREEIVEALLTYVGEQLKQG--VRLYSIARHLLGLFHGVPGARSWRRYISE 326
>gi|429213695|ref|ZP_19204859.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M1]
gi|428155290|gb|EKX01839.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. M1]
Length = 312
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 200/293 (68%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++ ++ LYTEM TT A+L G+ L + EHP+A Q+G + P +
Sbjct: 2 MDWTDRHCRFFLRQLSSHALLYTEMVTTGALLHGDAARFLRHDECEHPLALQLGGSVPAE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +AK+ + GYDE+NLN GCPS+RVQ+ GA LM P LV++C+ AMR++V I +TV
Sbjct: 62 LAAAAKLAEAAGYDEVNLNVGCPSDRVQHNMIGACLMAHPALVAECVLAMREAVSIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 122 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D Y ++ P
Sbjct: 182 LKRDFPDLEIVLNGGIKTLAECQEHLRTFDGVMLGREAYHNPYLLAQVDAALYGADAPAI 241
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+R + + RM YI++ + ++ +TRH+LGL + G+ +F+Q+LS
Sbjct: 242 ---SRAEALARMRPYIQRHIAEG--GAMHHVTRHVLGLGQGFPGARRFRQLLS 289
>gi|422660617|ref|ZP_16723026.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331019219|gb|EGH99275.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 339
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 29 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDEAEHPLALQLGGSTAAD 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 89 LAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPPLVADCVKAMRDAVGIPVTV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 149 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 209 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSVA--P 266
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 267 VISRHAALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 316
>gi|269468879|gb|EEZ80471.1| tRNA-dihydrouridine synthase [uncultured SUP05 cluster bacterium]
Length = 310
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 207/307 (67%), Gaps = 6/307 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F+R +++++ LYTEM TT+AIL G++ LD++ +EHP+ Q+G + +
Sbjct: 1 MDWTDRHCRYFYRLMSKHTQLYTEMITTKAILHGDQARLLDYHQDEHPLTLQLGGSNTDE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A+ AKI Q WGYDE+N+N GCPS+RVQ+G FGA LM P +V+DC+ AM+ + ITV
Sbjct: 61 MARCAKIAQDWGYDEVNINAGCPSDRVQSGSFGACLMNTPQVVADCVDAMKQVSNLSITV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD+ SYD + +F+ V +GC TFI+HAR A+LK L+PK+NR +P L Y++VY
Sbjct: 121 KSRIGVDDMESYDELTNFISLVEKSGCDTFIIHARKAWLKGLSPKENRTVPPLNYDWVYQ 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I INGGI ++ HL +D VMLGR Y P+L+++ D Y
Sbjct: 181 IKQDFPSLTIGINGGINHLEDACKHLEKVDSVMLGRAVYHQPYLLTDVDEIIYHQ--SSS 238
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
I +R ++ I Y++ Q + + I ++TRH+LGL K + KFK++LS + +T+D
Sbjct: 239 ITSREQVLLSFIDYMKVQ--SQQGVPIRAMTRHILGLYHGQKNAKKFKRLLSGSS-VTLD 295
Query: 300 NFQFFLN 306
+ +L+
Sbjct: 296 HLYEWLD 302
>gi|225025575|ref|ZP_03714767.1| hypothetical protein EIKCOROL_02477 [Eikenella corrodens ATCC
23834]
gi|224941613|gb|EEG22822.1| hypothetical protein EIKCOROL_02477 [Eikenella corrodens ATCC
23834]
Length = 317
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 203/311 (65%), Gaps = 7/311 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++WLYTEM AI+ G + L + E+P+A Q+G + P
Sbjct: 2 LDWTDRHYRYMARQISRHAWLYTEMIHAGAIIHGQAERFLGKDESENPVALQLGGSNPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LAK+A I WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+ AM+++ + +T
Sbjct: 62 LAKAAAIAAGWGYDEINLNCGCPSPRVQKGAFGACLMNEVDLVADCLNAMQEAAPDCAVT 121
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIGID Y V DFVGT+S CRT+IVHARNA+L+ L+PK+NR +P LKY++V
Sbjct: 122 VKHRIGIDRQTEYQTVCDFVGTLSDKTACRTYIVHARNAWLEGLSPKENRDVPPLKYDYV 181
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LNYYSNLP 236
Y LK+DFP LEIIINGGIKT EI HL ++DGVM+GREAY NP LM ++D L Y LP
Sbjct: 182 YRLKQDFPHLEIIINGGIKTNTEIAEHLQHVDGVMIGREAYHNPMLMQSWDRLFYGERLP 241
Query: 237 QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ T I + R Y+++ L + I + RH LGL+ + ++Q+LS LL
Sbjct: 242 ETDFNTLIHTLYR---YMQRSLAADPGLTIRHMLRHYLGLLHGRNHARVWRQMLSDATLL 298
Query: 297 TIDNFQFFLNT 307
+ + L
Sbjct: 299 QSNRPELILEA 309
>gi|416384996|ref|ZP_11684716.1| tRNA-dihydrouridine synthase A [Crocosphaera watsonii WH 0003]
gi|357264948|gb|EHJ13769.1| tRNA-dihydrouridine synthase A [Crocosphaera watsonii WH 0003]
Length = 325
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/310 (46%), Positives = 203/310 (65%), Gaps = 7/310 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R RQITR++ LYTEM + AI G++ LDF+ EE P++ Q+G + P++
Sbjct: 1 MDYTDRHFRYLMRQITRHTLLYTEMIVSAAIKHGDRPKLLDFSPEEKPLSLQLGGDNPQE 60
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + WGYDEINLN GCPS+RVQ+G FGA LM KP LV+ C++ M+ V I +TV
Sbjct: 61 LAECAIIAEDWGYDEINLNVGCPSDRVQSGHFGACLMAKPELVAQCVQKMQQGVNIPVTV 120
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + FV V+ AGC+ F +HAR A+LK L+PK+NR IP L+Y VY
Sbjct: 121 KQRIGIDDQDSYEEMARFVAIVAEAGCQRFTIHARKAWLKGLSPKENRNIPPLRYQDVYR 180
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGI +++D HL +D VM+GR AY NP+L + D + Y +
Sbjct: 181 LKQDFPHLLIEINGGITNLEQVDNHLKIVDAVMIGRAAYDNPYLFATVDRDIYQ---EDI 237
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
IP TR +II +M+ YI ++ ++ I+RH+L + I G+ +K+ +S+ L
Sbjct: 238 IPATRHEIIEKMLPYIDHWVSRG--HKLHRISRHLLAMFAGIPGTKAWKRYISENAHLPG 295
Query: 299 DNFQFFLNTL 308
+ Q + L
Sbjct: 296 ADSQVIIEAL 305
>gi|429743706|ref|ZP_19277250.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 020 str.
F0370]
gi|429164825|gb|EKY06925.1| tRNA dihydrouridine synthase A [Neisseria sp. oral taxon 020 str.
F0370]
Length = 357
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 142/299 (47%), Positives = 200/299 (66%), Gaps = 5/299 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++WLYTEM A++ G+ + L + E+P+A Q+G +EP
Sbjct: 40 LDWTDRHYRYMARQISRHTWLYTEMINAGAVVYGDPERFLLKDDCENPVALQLGGSEPAA 99
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LA++A +GYDEINLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+ + +T
Sbjct: 100 LAQAAAKAAAYGYDEINLNCGCPSPRVQKGAFGACLMNEVALVADCLNAMQDAAPDCAVT 159
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIG+D Y V DFVGT++ C+TF+VHARNA+L L+PK+NR++P LKY +V
Sbjct: 160 VKHRIGVDRQTEYQIVADFVGTLAEKTACKTFVVHARNAWLNGLSPKENREVPPLKYEYV 219
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y LK++FPELEIIINGGIKT EI HL ++DGVM+GRE Y NP +M ++D +Y + Q
Sbjct: 220 YRLKREFPELEIIINGGIKTNGEIAAHLQHVDGVMVGRECYHNPMIMRDWDRLFYGDKRQ 279
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
++ R+ Y QL + + + RH LGLM + G+ +++++LS LL
Sbjct: 280 --AVGYAELAGRLKDYAAAQLAAGRGSILRHMARHYLGLMHGLNGARQWRRMLSDAALL 336
>gi|352079900|ref|ZP_08950969.1| TIM-barrel protein, yjbN family [Rhodanobacter sp. 2APBS1]
gi|351684609|gb|EHA67678.1| TIM-barrel protein, yjbN family [Rhodanobacter sp. 2APBS1]
Length = 328
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 197/293 (67%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++ + LYTEM T+ A++ G + L+ + +EHP+A Q+G +EP +
Sbjct: 19 MDWTDRHCRYFHRLLSPRARLYTEMVTSAALVRGKQLRLLEHSQQEHPLALQLGGSEPYE 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ + GYDEINLN GCPS+RVQ+G FGA LM +P LV+DC+KAMRD+V + +TV
Sbjct: 79 LAQAARLGAEAGYDEINLNVGCPSDRVQSGRFGACLMYEPALVADCVKAMRDAVSVPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD + Y ++ F + AG +VHAR A+LK L+PK+NR++P L Y VY
Sbjct: 139 KCRIGVDDQDDYAGLQQFTELMLEAGVEVLVVHARKAWLKGLSPKENREVPPLDYARVYR 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L ++INGGI T ++ HL +DGVMLGR AY +P+L++ + +
Sbjct: 199 LKREFPPLVVVINGGISTVDQVRSHLAQLDGVMLGRAAYHDPYLLAQLEHALHDE----P 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+P R D++ R+ Y+ +L + I+RH+LGL + G+ F++ LS+
Sbjct: 255 LPRREDVLQRLRPYVEAELARGTA--LKHISRHLLGLYQGEPGARAFRRTLSE 305
>gi|120600206|ref|YP_964780.1| tRNA-dihydrouridine synthase A [Shewanella sp. W3-18-1]
gi|120560299|gb|ABM26226.1| TIM-barrel protein, yjbN family [Shewanella sp. W3-18-1]
Length = 343
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P+ L
Sbjct: 31 LDWTDRHYRYFARLMSAKALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPQDL 90
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 91 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 150
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ V++ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 151 TRIGIDEQDSYEFLTYFIDIVNAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 210
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ HL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 211 KRDYPVLNISINGGVTTLEQAQGHLAQLDGVMMGREAYQNPYILARVDQVLCGS--QRAV 268
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 269 ISREDVIEAMLPYIEAHLQAG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 318
>gi|392420893|ref|YP_006457497.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri CCUG 29243]
gi|390983081|gb|AFM33074.1| tRNA-dihydrouridine synthase A [Pseudomonas stutzeri CCUG 29243]
Length = 292
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 137/273 (50%), Positives = 190/273 (69%), Gaps = 5/273 (1%)
Query: 20 WLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN 78
LYTEM TT A+L G+ + L ++ EHP+A Q+G + P +LA+ AK+ + GYDE+NLN
Sbjct: 1 MLYTEMVTTGALLHGDAQRFLRYDETEHPLALQLGGSVPAELAECAKLAEAAGYDEVNLN 60
Query: 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFV 138
GCPS+RVQN GA LM P LV+DC+KAMRD+V+I++TVKHRIGI+ +SY + DFV
Sbjct: 61 VGCPSDRVQNNMIGACLMGHPSLVADCVKAMRDAVDIEVTVKHRIGINGRDSYAELCDFV 120
Query: 139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198
G V AGCR+F VHAR A L+ L+PKQNR++P L+Y+ LKKDFP+LEII+NGGIKT
Sbjct: 121 GQVRDAGCRSFTVHARIAILEGLSPKQNREVPPLRYDIAVQLKKDFPDLEIILNGGIKTL 180
Query: 199 KEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQL 258
E HL DGVMLGREAY NP+L++ D + + + + +R + M YI + +
Sbjct: 181 DECRAHLETFDGVMLGREAYHNPYLLARVDRELFGS--EAPMISRAQALRNMRPYIERHM 238
Query: 259 NNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
++ ++ ITRH+LGL + G+ +F+Q+LS
Sbjct: 239 SDGGA--MHHITRHVLGLGQGFPGARRFRQLLS 269
>gi|440731707|ref|ZP_20911697.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
gi|440371128|gb|ELQ07985.1| tRNA-dihydrouridine synthase A [Xanthomonas translucens DAR61454]
Length = 339
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 192/293 (65%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A+ LG++ L F+A EHP+A Q+G ++P
Sbjct: 26 MDWTDRHCRVFHRLLAPSARLYTEMVHANAVVLGDRARLLGFDAVEHPLALQLGGSDPAL 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC+ M +V+I +TV
Sbjct: 86 LAQAARIGQGWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVATMVQAVDIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+D + Y+ FV V++AGC F+VHARNA+L+ L+PK+NR++P L+Y++ Y
Sbjct: 146 KCRLGVDQDDDYEVFLAFVDQVAAAGCGLFVVHARNAWLQGLSPKENREVPPLRYDWAYR 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L++++NGG+ L+ +DGVMLGR AY +P+++ D P+
Sbjct: 206 LKRERPQLQVVLNGGLADVDTARAQLDAVDGVMLGRAAYHDPYVLHRLDAALTGATPR-- 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R ++ + Y+ +L + + I RH+LGL G F+Q+LS+
Sbjct: 264 --PRAALLRALRPYVETRLADG--VALKHIARHLLGLFHGQPGGRAFRQVLSE 312
>gi|114046253|ref|YP_736803.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-7]
gi|113887695|gb|ABI41746.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-7]
Length = 340
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 27 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPAEL 86
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 87 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 146
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 147 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 206
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+ L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D + Q +
Sbjct: 207 KRDYSTLNISINGGITSLEQAKTHLQHLDGVMVGREAYQNPYILAQVDQLLCGS--QKAV 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 265 ISREAVIEAMLPYIEAHLQAG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 314
>gi|386855677|ref|YP_006259854.1| tRNA-dihydrouridine synthase A [Deinococcus gobiensis I-0]
gi|379999206|gb|AFD24396.1| tRNA-dihydrouridine synthase A [Deinococcus gobiensis I-0]
Length = 335
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 194/294 (65%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRHCR FHR +TR + LYTEM TT A+L G+++ L F EHP+A Q+G ++P
Sbjct: 2 LDWTDRHCRTFHRTLTRRTLLYTEMVTTGAVLHGDRERHLGFGVVEHPLALQLGGSDPAA 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A++ + +GYDE+NLNCGCPS+RVQ+G FGA LM P +V+ +AMR + + +TV
Sbjct: 62 LAECARMAEDYGYDEVNLNCGCPSDRVQSGAFGACLMATPDVVARAAEAMRHATSLPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY + FVGTV+ +G TFIVHAR A+L L+PK+NR+IP L+Y+ V
Sbjct: 122 KHRIGIDDLDSYGHLAHFVGTVAQSGVTTFIVHARKAWLSGLSPKENREIPPLRYDVVQR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK +FP L +++NGGI + L + DG M+GR AY++PFL++ D + + +
Sbjct: 182 LKAEFPHLTVVLNGGILSLDAAQDALAWADGAMIGRAAYQDPFLLAAADRDLFG---EAA 238
Query: 240 IP-TRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P TR + + Y+ QL + +N + +H LGL G+ +K+ +S+
Sbjct: 239 TPVTRREATEAYLPYVAAQLAQG--QPLNRMMKHTLGLFAGQPGARHWKRTISE 290
>gi|410619800|ref|ZP_11330691.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
gi|410160578|dbj|GAC34829.1| tRNA-dihydrouridine synthase A [Glaciecola polaris LMG 21857]
Length = 345
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+HCR F R+I++++ LYTEM TT AI+ K L +N EHP+A Q+G ++P +
Sbjct: 18 LDWTDKHCRYFLRKISKHALLYTEMVTTGAIIFGKGDYLAYNDAEHPVALQLGGSDPVDM 77
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ A + Q+ GYDE+N+N GCPS+RVQNG FGA LM +P V+ CI+AM+ V+I +TVK
Sbjct: 78 ARCAVLAQERGYDEVNINVGCPSDRVQNGRFGACLMAEPSTVAKCIEAMQKEVDIPVTVK 137
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++ Y + DF+ V+ +GC F VHAR A+LK L+PK+NR IP L Y+ VY L
Sbjct: 138 SRIGIDDMDEYKDLTDFISVVADSGCDIFTVHARKAWLKGLSPKENRDIPPLMYDRVYAL 197
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K +FP+L I INGG+KT + +HL +DGVM+GRE Y NP+++++ D +Y + +
Sbjct: 198 KDEFPQLNISINGGVKTLDDTAVHLEKLDGVMIGREVYSNPYILADVDRRFYQD--DRPV 255
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I++ M+ Y+ Q+ +I RHMLGL + G +++ LS+
Sbjct: 256 LSREEIVHAMLPYVEAQMAGG--ARAWNIARHMLGLFQGQPGGRIWRRYLSQ 305
>gi|409431250|ref|ZP_11262626.1| tRNA-dihydrouridine synthase A [Pseudomonas sp. HYS]
Length = 336
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 195/292 (66%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++ + LYTEM TT A+L G+ + L + EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSSNALLYTEMVTTGALLHGDAERFLRHDEAEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA AK+ + GYDE+NLN GCPS+RVQN GA LM P LV DC+KAM+D+V+I +TV
Sbjct: 86 LAACAKLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMGHPALVGDCVKAMQDAVQIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELCDFVGQVRDAGCRSFTVHARIAILEGLSPKENREIPPLRYDVAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+LE+++NGGIKT E HL DGVMLGREAY NP+L++ D + +
Sbjct: 206 LKADFPDLELVLNGGIKTLAECQEHLKIFDGVMLGREAYHNPYLLAEVDQQLFGS--TAP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + ++ YI L + ++ ITRH+LGL + G+ KF+Q+LS
Sbjct: 264 VISRSAALAKLRPYIAAHLASGGA--MHHITRHILGLGQGFPGARKFRQLLS 313
>gi|254466832|ref|ZP_05080243.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium Y4I]
gi|206687740|gb|EDZ48222.1| tRNA-dihydrouridine synthase A [Rhodobacterales bacterium Y4I]
Length = 316
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 196/295 (66%), Gaps = 8/295 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R + LYTEM T A++ G H L+FNAEEHP+A Q+G ++P +
Sbjct: 2 MDWTDRHCRYLHRLLSRETLLYTEMVTAPALVRGGALHLLEFNAEEHPVALQLGGSDPGE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ + GYDEINLNCGCPS+RVQ+G FGA+LM P LV+DC+ AMR++V++D+TV
Sbjct: 62 LAEAARLGAEAGYDEINLNCGCPSDRVQSGAFGAVLMQTPELVADCVAAMRETVDVDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D+ + + +F+ + +AGC +HAR A+L+ L+PK+NR IP L Y V+
Sbjct: 122 KCRIGVDEQEPEEVLPEFLEKIRAAGCGRVTIHARKAWLQGLSPKENRDIPPLDYELVHR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF-LMSNFDLNYYSNLPQ 237
+K FP+L + INGGI T E HL+ +DGVM+GR AY P ++ D Y
Sbjct: 182 MKAAFPDLHVSINGGIATLAEAKAHLDRGLDGVMVGRAAYHQPADVLCAADPEIYGT--- 238
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + + +M+ YI +L+ +N ITRHMLGL G+ +++++LS+
Sbjct: 239 GTVSDPAEAVRQMLPYIEARLSEG--ARLNQITRHMLGLFAGKPGARQWRRMLSE 291
>gi|146291866|ref|YP_001182290.1| tRNA-dihydrouridine synthase A [Shewanella putrefaciens CN-32]
gi|145563556|gb|ABP74491.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens CN-32]
Length = 343
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 198/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P+ L
Sbjct: 31 LDWTDRHYRYFARLMSAKALLYTEMVTTGAILHGRGDYLAYNQEEHPLALQLGGSNPQDL 90
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 91 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAECVDAMKQVVDIPVTVK 150
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ V++ GC F +HAR A+L+ L+PK+NR+IP L Y VY L
Sbjct: 151 TRIGIDEQDSYEFLTYFIDIVNAKGCTDFTIHARKAWLQGLSPKENREIPPLDYERVYQL 210
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGG+ T ++ HL +DGVM+GREAY+NP++++ D + Q +
Sbjct: 211 KRDYPVLNISINGGVTTLEQAQGHLAQLDGVMMGREAYQNPYILARVDQVLCGS--QRAV 268
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R D+I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 269 ISREDVIEAMLPYIEAHLQAG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 318
>gi|257059573|ref|YP_003137461.1| tRNA-dihydrouridine synthase A [Cyanothece sp. PCC 8802]
gi|256589739|gb|ACV00626.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 8802]
Length = 331
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 142/295 (48%), Positives = 203/295 (68%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH R F RQIT ++ LYTEM TQAI G++ L F+ EE P++ Q+G ++P +
Sbjct: 15 MERTDRHFRYFMRQITHHTLLYTEMIVTQAIRYGDRTKLLGFSPEEKPLSLQLGGDDPLE 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + +GYDE+NLN GCPS+RVQ+G FGA LM +P LV+ C++AM+ V I IT+
Sbjct: 75 LAECAIIAEDFGYDEVNLNVGCPSDRVQSGNFGACLMLQPELVARCVEAMQKRVNIPITI 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D+ + Y+ + +FV VS AGC+ F VHAR A+LK L+PK+NR IP L+Y VY
Sbjct: 135 KHRIGVDERDRYEDLVNFVKIVSEAGCQRFTVHARKAWLKGLSPKENRTIPPLRYEEVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN--LPQ 237
LKKDFP+L I INGGI T +I+ HL ++DGVM+GR AY NP+L + D + Y +P
Sbjct: 195 LKKDFPQLFIEINGGIITLDQIEHHLQFVDGVMIGRAAYDNPYLFATVDRDIYGQNIIP- 253
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR ++ +M+ YI +NN +++I+RH+L + + G+ +K+ +S+
Sbjct: 254 ---PTRHQVVEKMLPYIDYWVNNG--LKLHAISRHILAIFGGVPGTKAWKRHISE 303
>gi|71279069|ref|YP_267111.1| tRNA-dihydrouridine synthase A [Colwellia psychrerythraea 34H]
gi|71144809|gb|AAZ25282.1| TIM-barrel protein, yjbN family [Colwellia psychrerythraea 34H]
Length = 335
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 204/309 (66%), Gaps = 4/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+H R F+R +T+++ LYTEM TT AIL K L +N EHP+ Q+G ++ K +
Sbjct: 26 LDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLGGSDVKAM 85
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
+ AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+ M+ + I +TVK
Sbjct: 86 TECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVK 145
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ F+ VS A CR FI+HAR A+L L+PKQNR +P L Y+ VY +
Sbjct: 146 SRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI 205
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K DF +LE+ INGGIKT E + HL +IDGVM+GRE Y +P+++++ D Y + K+
Sbjct: 206 KNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQS-DTIKL 264
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN 300
+R ++I+ M+ YI + + N + RHMLGL + G+ KF+Q LS+
Sbjct: 265 -SRSEVIDLMVPYIDETIANG--GRAWHVLRHMLGLCNGLSGARKFRQHLSECAGKDGAG 321
Query: 301 FQFFLNTLN 309
Q L+ N
Sbjct: 322 GQVLLDAFN 330
>gi|430375502|ref|ZP_19429905.1| tRNA-dihydrouridine synthase A [Moraxella macacae 0408225]
gi|429540733|gb|ELA08761.1| tRNA-dihydrouridine synthase A [Moraxella macacae 0408225]
Length = 328
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 195/293 (66%), Gaps = 8/293 (2%)
Query: 11 FHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQK 69
F R + LYTEM +T AIL G+ H L F +HP+ Q+G + P +LAK AK+ Q
Sbjct: 31 FARWFNPHIHLYTEMISTSAILHGDSDHHLRFYDNQHPLVLQLGGSMPDELAKCAKLGQD 90
Query: 70 WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
+GYDEINLN GCPS+RVQ+ GA LM P LV+DC+KAM+DSV+I ITVKHRIGIDD +
Sbjct: 91 YGYDEINLNVGCPSDRVQHYKIGACLMKTPTLVADCVKAMQDSVQIPITVKHRIGIDDFD 150
Query: 130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189
SY+F+RDFVG V+ +GC FIVHAR A+L L+PK+NR+IP L+Y VY LK++F L I
Sbjct: 151 SYEFMRDFVGKVAESGCTHFIVHARIAWLNGLSPKENREIPPLRYEDVYRLKQEFKHLYI 210
Query: 190 IINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR 249
INGGIKT + + HL Y+DGVM+GRE+Y NP + + L KIPT +I +
Sbjct: 211 EINGGIKTLEAVKTHLMYVDGVMIGRESYHNPMFLGQLN-----ELWNQKIPTHREIFAQ 265
Query: 250 MILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQ 302
+I ++ Q NN + +I RH LGL + + GS K++Q LS LTI +
Sbjct: 266 LIEFLIQCEKNN--TPLTTIIRHYLGLFQGLTGSRKWRQALSGKKSLTISQIE 316
>gi|358012440|ref|ZP_09144250.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. P8-3-8]
Length = 340
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 197/303 (65%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AIL G LD+N EEHPI Q+G + PK
Sbjct: 21 MDWTTKDYRFFARLFNPNVILYTEMVTTGAILFGGANRHLDYNNEEHPIILQLGGSNPKD 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ Q WGYDE+NLN GCPS+RVQN GA LM +P LV++CI M+++V+I +TV
Sbjct: 81 LATCTKMAQDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIAEMQNAVDIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR +P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAKTGCNNFIVHARIALLQGLSPKENRDVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT E HL ++DG M+GREAY NP+L++ L +
Sbjct: 201 LKQERPNLLIEINGGIKTFAETQAHLEHVDGAMIGREAYHNPYLLAEI-----GQLWNLE 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +II++M+ YI +++ +I ITRH+LGL +N+ G+ K++Q LS N T
Sbjct: 256 MPDRFEIIDQMLPYIAKRMQEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTFA 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DVE 316
>gi|421464561|ref|ZP_15913251.1| tRNA dihydrouridine synthase A [Acinetobacter radioresistens
WC-A-157]
gi|400205314|gb|EJO36295.1| tRNA dihydrouridine synthase A [Acinetobacter radioresistens
WC-A-157]
Length = 335
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T R R F R LYTEM TT AIL G+ L++N EEHPI Q+G + PK
Sbjct: 17 MDWTTRDYRFFARLFNPNVILYTEMVTTGAILFGDAGRHLNYNREEHPIVLQLGGSNPKD 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI AMR +V I +TV
Sbjct: 77 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPELVAECISAMRQAVNIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID++ SY+ + FV TV+ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDNMQSYEEMLHFVDTVAKTGCNNFIVHARIALLQGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P+L I INGG+KT E HL ++DGVM+GREAY NP+L++ +L NLP
Sbjct: 197 LKQERPDLTIEINGGVKTLAETQEHLKHVDGVMIGREAYHNPYLLA--ELGELWNLP--- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+P R +I+ +M+ YI ++L ++ ITRH+LGL + + G+ K++Q LS N T
Sbjct: 252 MPDRFEIMEQMLPYIAKRLEEG--APLSVITRHILGLFQYLPGARKWRQALSGGNAKTYA 309
Query: 300 NFQ 302
+ +
Sbjct: 310 DVE 312
>gi|406915515|gb|EKD54589.1| hypothetical protein ACD_60C00066G0003 [uncultured bacterium]
Length = 319
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 204/293 (69%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
MN TDRH R F R I LYTEM T++A++ G+ L F++ EHP+A Q+G +EP K
Sbjct: 14 MNCTDRHARYFLRLIAPSVLLYTEMITSEALIHGDYARLLAFDSLEHPVALQLGGSEPSK 73
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
L +SA++ + +GYDE+NLN GCPS+RV+ G FGA LM +P V++C+ AM +V+I +TV
Sbjct: 74 LKRSAQLAEDFGYDEVNLNVGCPSHRVKAGRFGACLMLEPDRVAECVSAMCAAVKIPVTV 133
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D +SY+ + FV VS AGCR FI+HAR A+L ++PKQNR+IP L+Y V
Sbjct: 134 KCRIGVDHEDSYEKLAGFVQKVSEAGCRVFIIHARKAWLTGISPKQNREIPPLQYEVVRQ 193
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DF L I+INGGIKT K+++ HL Y++GVM+GREAY NP+ ++ ++ P
Sbjct: 194 IKRDFQALSIVINGGIKTVKDVEEHLPYVEGVMIGREAYSNPYFLAALQEKFFLT-PSV- 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I + I YI+ QL NK+K ++S+TRH+LGL + KG+ +++ LS+
Sbjct: 252 --SRKAVIEKFIPYIQDQL-KNKVK-LSSVTRHILGLYQGQKGARIWRRYLSE 300
>gi|164685730|ref|ZP_01945619.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165918518|ref|ZP_02218604.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
gi|164601240|gb|EAX33765.2| tRNA dihydrouridine synthase A [Coxiella burnetii 'MSU Goat Q177']
gi|165917764|gb|EDR36368.1| tRNA dihydrouridine synthase A [Coxiella burnetii Q321]
Length = 328
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 195/299 (65%), Gaps = 13/299 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A QVG ++P+
Sbjct: 12 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 72 LALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 132 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--------LNY 231
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L
Sbjct: 192 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 251
Query: 232 YSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
P R ++ R + Y+ +QL N + ++TRH+ GL + G+ K+++ L
Sbjct: 252 ADKKQTPLTPKR--VLLRYLPYMAKQLANG--VPLYAMTRHLNGLFQGQPGAKKWRRFL 306
>gi|291296460|ref|YP_003507858.1| YjbN family TIM-barrel protein [Meiothermus ruber DSM 1279]
gi|290471419|gb|ADD28838.1| TIM-barrel protein, yjbN family [Meiothermus ruber DSM 1279]
Length = 339
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 193/293 (65%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R R I+R LYTEM Q+IL GN+ LDF+ EEHP+A Q+G + P+K
Sbjct: 17 LDWTDRHFRYLVRLISRRVRLYTEMVVDQSILLGNRPKLLDFSPEEHPVALQLGGSVPEK 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + WGYDEINLN GCPS RVQ G FGA LM +P LV++ + AMR +V+I +T
Sbjct: 77 LAEAARIGEAWGYDEINLNLGCPSERVQGGGFGACLMLEPDLVAESMAAMRQAVKIPVTA 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+D++ Y ++ FV ++ G FIVHAR A+LK L+P +NR IP L+Y++VY
Sbjct: 137 KHRLGVDEVEDYRYLARFVEKLAGVGVGVFIVHARKAYLKGLSPAENRTIPPLRYDWVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I++NGG++T +E+ HL +DGVMLGR Y++PF++ D + +
Sbjct: 197 LKQDFPHLTIVLNGGVRTLEEVQAHLAKVDGVMLGRAVYEDPFVLEPADRRLFG---EAH 253
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR+++ M+ Y QL + ++ RHML L K ++++LS+
Sbjct: 254 ATTRLEVAQAMLRYAEAQLEQG--TPLWAMARHMLNLFKGQPRGRLWRRVLSE 304
>gi|212212648|ref|YP_002303584.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuG_Q212]
gi|212011058|gb|ACJ18439.1| NIFR3-like protein [Coxiella burnetii CbuG_Q212]
Length = 353
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 195/299 (65%), Gaps = 13/299 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A QVG ++P+
Sbjct: 37 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 96
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 97 LALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 156
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 157 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 216
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--------LNY 231
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L
Sbjct: 217 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 276
Query: 232 YSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
P R ++ R + Y+ +QL N + ++TRH+ GL + G+ K+++ L
Sbjct: 277 TDKKQTPLTPKR--VLLRYLPYMAKQLANG--VPLYAMTRHLNGLFQGQPGAKKWRRFL 331
>gi|209363933|ref|YP_001424351.2| tRNA-dihydrouridine synthase A [Coxiella burnetii Dugway 5J108-111]
gi|212218379|ref|YP_002305166.1| tRNA-dihydrouridine synthase A [Coxiella burnetii CbuK_Q154]
gi|207081866|gb|ABS78105.2| NIFR3-like protein [Coxiella burnetii Dugway 5J108-111]
gi|212012641|gb|ACJ20021.1| NIFR3-like protein [Coxiella burnetii CbuK_Q154]
Length = 353
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 195/299 (65%), Gaps = 13/299 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A QVG ++P+
Sbjct: 37 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 96
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 97 LALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 156
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 157 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 216
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--------LNY 231
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L
Sbjct: 217 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 276
Query: 232 YSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
P R ++ R + Y+ +QL N + ++TRH+ GL + G+ K+++ L
Sbjct: 277 ADKKQTPLTPKR--VLLRYLPYMAKQLANG--VPLYAMTRHLNGLFQGQPGAKKWRRFL 331
>gi|294139225|ref|YP_003555203.1| tRNA-dihydrouridine synthase A [Shewanella violacea DSS12]
gi|293325694|dbj|BAJ00425.1| tRNA-dihydrouridine synthase A [Shewanella violacea DSS12]
Length = 329
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 200/293 (68%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R R ++ LYTEM TT AI+ K L +N+EE+P+A Q+G + L
Sbjct: 21 LDWTDRHYRYLARIMSTELLLYTEMVTTGAIIHGKGDYLAYNSEENPLALQLGGSNHHDL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQ+G FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 81 ATCAKLAAERGYDEINLNVGCPSDRVQSGRFGACLMAEPKLVAECVTAMKQVVDIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F+ +FV TVS GC TFIVHAR A+L+ L+PKQNR+IP L Y VY L
Sbjct: 141 TRIGIDDQDSYEFLSEFVDTVSDVGCDTFIVHARKAWLQGLSPKQNREIPPLDYQRVYRL 200
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
KKD+P+L I INGG+KT E HL +IDGVM+GREAY+NP++++ D SN P
Sbjct: 201 KKDYPDLHISINGGVKTLDECHEHLQHIDGVMVGREAYQNPYILAEVDQRLCGSNKP--- 257
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R ++++ I YI + L + +N ITRHM G+ + GS +++ +S+
Sbjct: 258 VLSRDAVLDKFIPYIEKHLMDG--GRLNHITRHMTGMYQGEPGSRAWRRYISE 308
>gi|428223727|ref|YP_007107824.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
gi|427983628|gb|AFY64772.1| tRNA-U16,U17-dihydrouridine synthase [Geitlerinema sp. PCC 7407]
Length = 344
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQITR + LYTEM T+ AI+ G++ H L F+ EE P++ QVG ++P +
Sbjct: 25 MDRTDRHFRYFLRQITRCTLLYTEMVTSAAIIHGDRDHLLGFSPEEKPLSLQVGGDDPAQ 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I + +GYDEINLN GCPS+RVQ+G FGA LM +P V++ + AM+ + +TV
Sbjct: 85 LAQCARIAEDFGYDEINLNVGCPSDRVQSGNFGACLMAQPERVAEAVAAMQAVTRLPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD + Y+ + FV TV+SAGCR F VHAR A+L+ L+PK+NR +P L+Y+ VY
Sbjct: 145 KHRIGIDDRDRYEDMTAFVETVASAGCRHFTVHARKAWLQGLSPKENRDVPPLRYDDVYR 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGGI T ++ HL +D VM+GR AY +PFL + D ++Y +
Sbjct: 205 LKQDFPHLFIEINGGITTLEQARDHLQRVDAVMIGRAAYDHPFLFATVDRDFYGQ--AVE 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR + M+ YI + + +N I+RHML L GS +K+ +++
Sbjct: 263 PPTRQAVAEAMVPYIARWVGPQ--FKLNRISRHMLQLFNGQPGSRAWKRHITE 313
>gi|402758679|ref|ZP_10860935.1| tRNA-dihydrouridine synthase A [Acinetobacter sp. NCTC 7422]
Length = 334
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 203/310 (65%), Gaps = 8/310 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN +E PI Q+G + P++
Sbjct: 17 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAIIYGGANRHLDFNQQEQPIVLQLGGSNPQE 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 77 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPDLVAECIHSMQKAVSIPVTV 136
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 137 KHRIGIDDMHSYEEMLHFVDTVATTGCTHFIVHARIAILQGLSPKENREVPPLRYEDVYR 196
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIKT +E HL ++DGVM+GREAY NP+L++ L +
Sbjct: 197 LKQERPHLTIEINGGIKTFEETQQHLQHVDGVMIGREAYHNPYLLAEM-----GQLWNLQ 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI+Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI
Sbjct: 252 APDRFEIMQQMMPYIQQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTIT 309
Query: 300 NFQFFLNTLN 309
+ + + +
Sbjct: 310 DIEHAIQNIQ 319
>gi|359427942|ref|ZP_09218985.1| putative tRNA-dihydrouridine synthase [Acinetobacter sp. NBRC
100985]
gi|358236604|dbj|GAB00524.1| putative tRNA-dihydrouridine synthase [Acinetobacter sp. NBRC
100985]
Length = 339
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 204/309 (66%), Gaps = 8/309 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN +EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNIVLYTEMVTTGAIIYGGANRHLDFNKQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ Q WGYDE+NLN GCPS+RVQN GA LM +P LV+DCI +M+ +V I +TV
Sbjct: 81 LATCTKMAQDWGYDEVNLNVGCPSDRVQNNKIGACLMAEPNLVADCIYSMQKAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID + SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDGMQSYEEMLHFVDTVAATGCTHFIVHARIAILQGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L I INGGIK+ E HL ++DGVM+GREAY NP+L++ +L NL +
Sbjct: 201 LKQERPNLIIEINGGIKSFDETQQHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---E 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R +I+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI
Sbjct: 256 APNRFEIMQQMMPYIHQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQALSGGNAKTIQ 313
Query: 300 NFQFFLNTL 308
+ + ++ +
Sbjct: 314 DIETAMSNI 322
>gi|428299821|ref|YP_007138127.1| tRNA-U16,U17-dihydrouridine synthase [Calothrix sp. PCC 6303]
gi|428236365|gb|AFZ02155.1| tRNA-U16,U17-dihydrouridine synthase [Calothrix sp. PCC 6303]
Length = 340
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/313 (45%), Positives = 204/313 (65%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQIT+++ LYTEM TT AI+ G+++H L F+ EE P+ QVG + P++
Sbjct: 29 MDRTDRHFRYFMRQITQHTLLYTEMVTTAAIIHGDREHLLGFSPEEKPLVLQVGGDNPQE 88
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK A+I + GYDEINLN GCPS+RVQ+G FGA LM +P V+DC+ AM +V I I+V
Sbjct: 89 LAKCARIAEDMGYDEINLNVGCPSSRVQDGNFGACLMMQPEKVADCVAAMVAAVNIPISV 148
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+DD++SY+ + FV ++ +GC+ F VHAR A+LK L+PK+NR IP L+Y V+
Sbjct: 149 KHRIGVDDVDSYENMAAFVNAIALSGCKVFNVHARKAWLKGLSPKENRDIPPLRYADVHR 208
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYS--NLPQ 237
LK DFP+L I INGG+ ++ L +D VM+GR AY NP+L S D +Y N+P+
Sbjct: 209 LKADFPDLFIEINGGLTNLAQVQEQLESVDAVMIGRAAYNNPYLFSQVDSQFYGDENIPR 268
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
TR ++ M+ Y+ + K ++ ITRHML L GS +KQ +++ +
Sbjct: 269 ----TRHQVVEAMLPYVDKW--TAKGLKLHKITRHMLQLFAGKPGSRAWKQYITEHSCRG 322
Query: 298 IDNFQFFLNTLNI 310
+ Q + L +
Sbjct: 323 AGDSQVLVQALAL 335
>gi|262374231|ref|ZP_06067507.1| tRNA-dihydrouridine synthase A [Acinetobacter junii SH205]
gi|262310789|gb|EEY91877.1| tRNA-dihydrouridine synthase A [Acinetobacter junii SH205]
Length = 338
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 201/303 (66%), Gaps = 8/303 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T + R F R LYTEM TT AI+ G LDFN +EHPI Q+G + P++
Sbjct: 21 MDWTTKDYRFFARLFNPNVVLYTEMVTTGAIIYGGANRHLDFNQQEHPIVLQLGGSNPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ + WGY+E+NLN GCPS+RVQN GA LM +P LV++CI +M+ +V I +TV
Sbjct: 81 LATCTKMAEDWGYNEVNLNVGCPSDRVQNNKIGACLMAEPNLVAECIHSMQKAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD+ SY+ + FV TV++ GC FIVHAR A L+ L+PK+NR++P L+Y VY
Sbjct: 141 KHRIGIDDMQSYEEMLHFVDTVAATGCTHFIVHARIAILQGLSPKENREVPPLRYEDVYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK + P L I INGGIKT +E HL ++DGVM+GREAY NP+L++ +L NL
Sbjct: 201 LKLERPHLTIEINGGIKTFEETKQHLQHVDGVMIGREAYHNPYLLA--ELGQLWNL---D 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
P R DI+ +M+ YI Q++ +I ITRH+LGL +N+ G+ K++Q LS N TI
Sbjct: 256 APDRFDIMQQMMPYIHQRVAEGAPLSI--ITRHILGLFQNLPGARKWRQSLSGGNAKTIT 313
Query: 300 NFQ 302
+ +
Sbjct: 314 DIE 316
>gi|307154453|ref|YP_003889837.1| yjbN family TIM-barrel protein [Cyanothece sp. PCC 7822]
gi|306984681|gb|ADN16562.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 7822]
Length = 329
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH R RQITR + LYTEM TT AI+ G++ LDF+ EE P+A Q+G + P++
Sbjct: 18 MERTDRHFRYLMRQITRRTLLYTEMITTAAIIHGDRHKLLDFSTEEKPLALQLGGDNPQE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A I WGYDE+NLN GCPS+RVQNG FGA LM +P V+ C+ AM+ +V I +TV
Sbjct: 78 LALCASIAADWGYDEVNLNVGCPSDRVQNGNFGACLMAQPEKVAHCVAAMQKAVNIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD + Y+ + +FV VS AGC F VHAR A+LK L+PK+NR IP L+Y VY
Sbjct: 138 KHRIGIDDRDRYEDLANFVRIVSEAGCCRFSVHARKAWLKGLSPKENRTIPPLRYEDVYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L I INGGI T +++ L ++DGVM+GR AY NP+L + D + Y +
Sbjct: 198 LKQEFPHLFIEINGGITTLEQVHQQLQWVDGVMIGRAAYDNPYLFATVDRDIYGE--ETI 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR + +M+ YI + + + IK +++I+RH+L L G+ +K+ +S+
Sbjct: 256 PPTRHQVAEKMLPYI-EDIVSQGIK-LHAISRHLLQLFSGQPGTKAWKRYISE 306
>gi|418040056|ref|ZP_12678308.1| TIM-barrel protein, yjbN family [Escherichia coli W26]
gi|383477038|gb|EID68965.1| TIM-barrel protein, yjbN family [Escherichia coli W26]
Length = 301
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 139/281 (49%), Positives = 192/281 (68%), Gaps = 5/281 (1%)
Query: 13 RQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY 72
R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P LA+ AK+ + GY
Sbjct: 2 RLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGY 61
Query: 73 DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD 132
DEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK RIGIDD +SY+
Sbjct: 62 DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYE 121
Query: 133 FVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 191
F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY LK+DFP L + I
Sbjct: 122 FLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSI 181
Query: 192 NGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMI 251
NGGIK+ +E HL ++DGVM+GREAY+NP +++ D + + P + ++ M
Sbjct: 182 NGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADP--VAVVRAMY 239
Query: 252 LYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 240 PYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 278
>gi|126658190|ref|ZP_01729341.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
gi|126620561|gb|EAZ91279.1| tRNA-dihydrouridine synthase A [Cyanothece sp. CCY0110]
Length = 341
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/295 (48%), Positives = 199/295 (67%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQITR++ LYTEM T AI G++ LDF+ EE P++ Q+G ++P +
Sbjct: 18 MDYTDRHFRYFMRQITRHTLLYTEMIVTAAIKHGDRSKLLDFSPEEKPLSLQLGGDKPHE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + WGYDE+NLN GCPS+RVQ+G FGA LM P LV+ C++ M+ +V I +TV
Sbjct: 78 LAECAIIAEDWGYDEVNLNVGCPSDRVQSGHFGACLMANPDLVAQCVEKMQKAVTIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD +SY+ + FV VS AGC+ F VHAR A+LK L+PK+NR IP L+Y VY
Sbjct: 138 KHRIGIDDQDSYENMAQFVKVVSDAGCQRFTVHARKAWLKGLSPKENRNIPPLRYEAVYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L I INGGI +++ HL +D VM+GR AY NP+L + D + Y Q K
Sbjct: 198 LKQEFPHLFIEINGGITNLEQVRNHLELVDAVMIGRAAYDNPYLFATVDRDIY----QDK 253
Query: 240 I--PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I TR +II +M+ YI ++ ++ I+RH+L + I G+ +K+ +S+
Sbjct: 254 IIQLTRHEIIEKMLPYIDDWVSRG--HKLHKISRHLLAIFSGIPGTKAWKRHISE 306
>gi|29654227|ref|NP_819919.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 493]
gi|29541493|gb|AAO90433.1| NifR3-like protein [Coxiella burnetii RSA 493]
Length = 353
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 195/299 (65%), Gaps = 13/299 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A QVG ++P+
Sbjct: 37 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 96
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 97 LALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 156
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 157 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 216
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--------LNY 231
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L
Sbjct: 217 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 276
Query: 232 YSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
P R ++ R + Y+ +QL N + ++TRH+ GL + G+ K+++ L
Sbjct: 277 ADKKQTPLTPKR--VLLRYLPYMAKQLANG--VPLYAMTRHLNGLFQGQPGAKKWRRFL 331
>gi|427428509|ref|ZP_18918550.1| tRNA dihydrouridine synthase A [Caenispirillum salinarum AK4]
gi|425882242|gb|EKV30924.1| tRNA dihydrouridine synthase A [Caenispirillum salinarum AK4]
Length = 376
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/298 (45%), Positives = 199/298 (66%), Gaps = 8/298 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK--KHCLDFNAE-EHPIAFQVGDNEP 57
M+ TDRH R F R +T + LYTEM T AIL + + L +N + EHP+A Q+G ++P
Sbjct: 53 MDWTDRHERAFLRCLTTRTLLYTEMVVTGAILHGRDPERFLGYNTDVEHPLALQLGGSDP 112
Query: 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--- 114
++LA+ +I +WGYDE+NLNCGCPS+RV G FGA LM +P LV DC+ AMR++
Sbjct: 113 RELAECTRIAAEWGYDEVNLNCGCPSDRVSAGRFGACLMAEPELVRDCLSAMREAAGEAG 172
Query: 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 174
+ITVKHRIGIDD++ YD + FVGTV+ +G R+F VHAR A+L+ L+PK+NR+IP L++
Sbjct: 173 PEITVKHRIGIDDMDGYDHLTRFVGTVAESGVRSFSVHARKAWLQGLSPKENREIPPLRH 232
Query: 175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 234
+ V+ LK+DFP LEII+NGGIK+ E H+ DGVM+GR AY+ P+ + D +
Sbjct: 233 DVVHRLKQDFPHLEIILNGGIKSVPEALTHIGPTDGVMIGRAAYETPWCLREADHLVWGE 292
Query: 235 LPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
TR + + R + YI+ +L+ + + RHMLGL + ++G+ +++ +S+
Sbjct: 293 PAGNAPATRHEAVRRYLPYIQARLDEGVF--LKHMARHMLGLFQGVRGARAWRRYISE 348
>gi|163749318|ref|ZP_02156567.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
gi|161331037|gb|EDQ01963.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
Length = 310
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 197/292 (67%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R R ++ LYTEM TT AI+ K L +N+EE+P+A Q+G + P+ L
Sbjct: 2 LDWTDRHYRYLARIMSTELLLYTEMVTTGAIIHGKGDYLAYNSEENPLALQLGGSNPQDL 61
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQ+G FGA LM P LV++C+ AM+ V+I +TVK
Sbjct: 62 ATCAKLAAERGYDEINLNVGCPSDRVQSGRFGACLMADPKLVAECVTAMKQVVDIPVTVK 121
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SY+F+ +FV TVS GC TFIVHAR A+L+ L+PKQNR+IP L Y VY L
Sbjct: 122 TRIGIDDQDSYEFLTEFVDTVSDVGCDTFIVHARKAWLQGLSPKQNREIPPLDYQRVYRL 181
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P+L I INGG+KT E HL +IDGVM+GREAY+NP++++ D + +
Sbjct: 182 KQDYPKLHISINGGVKTLDECRQHLLHIDGVMVGREAYQNPYILAEVDQRLCGS--NKSV 239
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++ + I YI + L +N ITRHM G+ + GS +++ +S+
Sbjct: 240 LSRDAVLEKFIPYIEKHLVEG--GRLNHITRHMTGMFQGEPGSRAWRRYISE 289
>gi|161831190|ref|YP_001596802.1| tRNA-dihydrouridine synthase A [Coxiella burnetii RSA 331]
gi|161763057|gb|ABX78699.1| tRNA dihydrouridine synthase A [Coxiella burnetii RSA 331]
Length = 328
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/299 (48%), Positives = 195/299 (65%), Gaps = 13/299 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L G + CLD++ EEHP+A QVG ++P+
Sbjct: 12 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 72 LALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 132 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--------LNY 231
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L
Sbjct: 192 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 251
Query: 232 YSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
P R ++ R + Y+ +QL N + ++TRH+ GL + G+ K+++ L
Sbjct: 252 ADKKQTPLTPKR--VLLRYLPYMAKQLANG--VPLYAMTRHLNGLFQGQPGAKKWRRFL 306
>gi|118602457|ref|YP_903672.1| tRNA-dihydrouridine synthase A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567396|gb|ABL02201.1| tRNA-U16,U17-dihydrouridine synthase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 322
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/292 (48%), Positives = 195/292 (66%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F+R I++ L+TEM T +AIL GNK LDFN EHP+ Q+G +EPK+
Sbjct: 13 MDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDFNVCEHPLVLQLGGSEPKE 72
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A++AKI Q WGY+EIN+N GCPSNRVQ+ FG LM P +V+ C+ AMR V++ ITV
Sbjct: 73 MAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQCVDAMRQMVDVPITV 132
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D+++SYD + +FV TV S+GC ++HAR A+LK L+PK+NR +P L Y VY
Sbjct: 133 KSRIGVDNMDSYDELVNFVATVESSGCDNLVIHARKAWLKGLSPKENRSVPKLNYERVYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I INGGI + HL ++D VMLGR Y P+L+ D Y +
Sbjct: 193 IKRDFPHLAIGINGGIMDMESSLQHLEHVDSVMLGRAVYHQPYLLRKVDGLIYQK--KSS 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
I +R ++ I Y++ Q N+ + I S+TRH+ GL K + KFK++LS
Sbjct: 251 ILSREQVLLAFIEYMKVQHANSVL--IRSMTRHIFGLYHGQKNAKKFKRLLS 300
>gi|428771509|ref|YP_007163299.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
gi|428685788|gb|AFZ55255.1| tRNA-U16,U17-dihydrouridine synthase [Cyanobacterium aponinum PCC
10605]
Length = 336
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 197/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R R +T+++ LYTEM TTQAI+ G++ LDF+ EE P+A Q+G + P++
Sbjct: 25 MDYTDRHFRYVMRVLTKHTLLYTEMITTQAIIHGDRTKLLDFSPEEKPVALQLGGDNPQQ 84
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AKI WGYDEINLN GCPS+RVQNG FGA LM +P V+ C++AM +V I +TV
Sbjct: 85 LAECAKIGADWGYDEINLNVGCPSSRVQNGNFGACLMAQPDTVARCVEAMNKAVNIPVTV 144
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD +SY + +F+ VSS GC FI+HAR A+L+ L+PK+NR+IP L+Y VY
Sbjct: 145 KHRIGIDDQDSYGDLLNFIKIVSSTGCDRFIIHARKAWLQGLSPKENREIPPLRYEDVYQ 204
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+D P L I INGGIKT + HL +DGVM+GR AY NP+L ++ D Y +
Sbjct: 205 IKQDLPHLTIEINGGIKTIEATKQHLTKVDGVMIGRAAYDNPYLFASIDQEIYGS--SEP 262
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I TR +I+ + YI L ++ +N+I RH L + GS +K+ LS+
Sbjct: 263 IKTREEIVESLYPYI--DLWTSRNLKLNTIMRHTLQIFAGQPGSKIWKRHLSE 313
>gi|422617211|ref|ZP_16685914.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
gi|330897594|gb|EGH29013.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. japonica
str. M301072]
Length = 300
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/280 (48%), Positives = 192/280 (68%), Gaps = 5/280 (1%)
Query: 13 RQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 71
R++++++ LYTEM TT A+L G+++ L + EHP+A Q+G + LA +++ Q+ G
Sbjct: 2 RKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAADLAACSRLAQEAG 61
Query: 72 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY 131
YDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TVKHRIGI+ +SY
Sbjct: 62 YDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSY 121
Query: 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 191
+ DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V LK DFP+LEI++
Sbjct: 122 AELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKSDFPDLEIVL 181
Query: 192 NGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMI 251
NGGIKT ++ HL DGVMLGREAY NP+L+++ D + + + +R D + M
Sbjct: 182 NGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAPVISRYDALESMR 239
Query: 252 LYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 240 PYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 277
>gi|333907912|ref|YP_004481498.1| yjbN family TIM-barrel protein [Marinomonas posidonica IVIA-Po-181]
gi|333477918|gb|AEF54579.1| TIM-barrel protein, yjbN family [Marinomonas posidonica
IVIA-Po-181]
Length = 345
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 195/294 (66%), Gaps = 6/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
M+ T R+F R +T+ + LYTEM T+ A+L N L ++ EHPIA Q+G + K
Sbjct: 30 MDWTTSDYRVFARTLTKNTLLYTEMVTSGALLQGNNPARFLHYDECEHPIALQLGGSNAK 89
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
L + A + +K GYDE+NLN GCPS+RVQN GA LM P V D +KAM+DS I +T
Sbjct: 90 DLGQCAAMAEKCGYDEVNLNVGCPSDRVQNSLIGACLMAHPDKVKDAMKAMQDSCNIPVT 149
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
+KHRIG+D+ Y VRDFVG VS+ G +TFIVHARNA L+ L+PK+NR+IP LKY++V+
Sbjct: 150 LKHRIGLDEQQDYSVVRDFVGEVSTTGVKTFIVHARNAILQGLSPKENREIPPLKYHYVH 209
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK+DFP+LEIIINGGIKT +E HL +DGVM+GREAY NP+L+S D Y N P
Sbjct: 210 QLKEDFPDLEIIINGGIKTIEECQAHLLKVDGVMIGREAYHNPWLLSQVDQAIYGNAP-- 267
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R + + Y+ ++L + + +TRH+LG+ + G +F++ LS+
Sbjct: 268 VVTDRYQALEAFVPYVEEKLAQG--ERLLHLTRHILGIFQGEPGGKQFRRYLSE 319
>gi|114799763|ref|YP_759023.1| tRNA-dihydrouridine synthase A [Hyphomonas neptunium ATCC 15444]
gi|114739937|gb|ABI78062.1| tRNA-dihydrouridine synthase A [Hyphomonas neptunium ATCC 15444]
Length = 328
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 193/293 (65%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +T+ + L+TEM T A++ G+++ + F+ EHP+ Q+G +EP K
Sbjct: 15 MDWTDRHCRAFHRTLTKRALLWTEMVTADAVIHGDRQRLIGFSDVEHPLVLQLGGSEPGK 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + +GYDE+NLNCGCPS RVQ+G FGA LM +P LV+DC+ AMR +V I +TV
Sbjct: 75 LAEAARIAEGYGYDEVNLNCGCPSERVQSGAFGACLMAEPDLVADCVAAMRAAVSIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K+RI IDD+ + + + F+ VS AGC F VHAR A+LK L+PK+NR++P L Y V
Sbjct: 135 KNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPKENREVPPLDYGLVAE 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK P+L II+NGGI T + H+ DGVMLGR AY+ P L+ D + + +
Sbjct: 195 LKTARPDLTIILNGGIATIDQCRDHIGVFDGVMLGRAAYQTPGLLGQVDSDLFG---EGA 251
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ D + YI +L N++++TRHMLGL G+ ++++ILS+
Sbjct: 252 MIAAGDAVRAYEPYIAARLAEG--SNLHAMTRHMLGLFAGQPGARQWRRILSE 302
>gi|254490145|ref|ZP_05103336.1| TIM-barrel protein, yjbN family [Methylophaga thiooxidans DMS010]
gi|224464631|gb|EEF80889.1| TIM-barrel protein, yjbN family [Methylophaga thiooxydans DMS010]
Length = 327
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDR CR R I+R+S LYTEM TT A++ G++ L A E+P+A Q+G +EP
Sbjct: 19 LDWTDRDCRYMLRLISRHSLLYTEMVTTGALIYGDRDRFLAHEALEYPLALQLGGSEPND 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK+ + GYDEINLN GCPS+RVQ+G FGA L+ +P +V++ + AM++ V I +TV
Sbjct: 79 LAQCAKMGEDAGYDEINLNVGCPSDRVQSGRFGACLLAEPDVVAEGVAAMQNQVSIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+GID+ +SY+F+ DF+ VS+AGC TFI+HAR A+LK L+PK+NR +P L Y+ VY
Sbjct: 139 KTRLGIDEHDSYEFLTDFIKKVSAAGCDTFILHARKAWLKGLSPKENRDVPPLNYDRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I INGGI T +E LHL ++DGVM+GR Y NPFL++ D + +
Sbjct: 199 VKQDFPHLHIDINGGINTLEEAQLHLQHVDGVMMGRAIYHNPFLLAQADEAIFGH--DAS 256
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ TR ++ M+ YI +++ + + SITRHMLG+ + G+ ++++ +S+
Sbjct: 257 VLTRHQVVEAMLPYIEKRMAQG--RPLKSITRHMLGVFQGQAGARRWRRHISE 307
>gi|372273289|ref|ZP_09509337.1| tRNA-dihydrouridine synthase A [Marinobacterium stanieri S30]
Length = 317
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 200/294 (68%), Gaps = 6/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T CR+FHR ++R++ LYTEM TT A++ G+ L + EHPIA Q+G + P
Sbjct: 2 MDWTTSDCRVFHRLMSRHTLLYTEMITTGALIHGDAARHLRYEDSEHPIALQLGGSNPAD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA ++ Q+WGYDE+NLN GCPS+RVQN GA LM P V++C+ M+ +V+I +TV
Sbjct: 62 LATCTRMAQEWGYDEVNLNVGCPSDRVQNNMIGACLMEFPERVAECLAEMQAAVDIPVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+GIDD++S++ + FV V +GCR+F +HAR A L L+PK+NR IP L Y+ VY
Sbjct: 122 KHRLGIDDLDSFEHLHRFVEVVRQSGCRSFTIHARKAILDGLSPKENRDIPPLIYDRVYR 181
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF-LMSNFDLNYYSNLPQY 238
+K+ FP+LE++INGGIKT +E D HL ++DGVM+GREAY+NP+ L+S D +++N Y
Sbjct: 182 IKELFPDLEVVINGGIKTLEECDTHLQHVDGVMIGREAYQNPWPLLSQADARFFNN--NY 239
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R+D+ I ++ ++L + ++ +H+LGL +G +F++ LS+
Sbjct: 240 PYLSRLDVAEAFIPHLEKRLAEG--APLYAVIKHLLGLFHGQRGGKQFRRYLSE 291
>gi|88800086|ref|ZP_01115656.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
gi|88777212|gb|EAR08417.1| hypothetical protein MED297_16794 [Reinekea blandensis MED297]
Length = 338
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 203/311 (65%), Gaps = 8/311 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ T CR FHR +TR + LYTEM TT A++ GN L ++ EEHPIA Q+G ++ +
Sbjct: 15 MDWTTSECRQFHRLLTRQALLYTEMVTTGALIHGNAGRFLRYDTEEHPIALQLGGHDADE 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA K+ ++ GYD++NLN GCPS+RVQNG GAILM V+D +KAM+D V I +T+
Sbjct: 75 LAHCTKMAEEHGYDQVNLNAGCPSDRVQNGMIGAILMAHADKVTDALKAMQDRVNIPVTL 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD +SY+F+RDFVG VS +GC TFIVHAR A L L+PK+NR+IP L Y+ V
Sbjct: 135 KHRIGIDDYDSYEFLRDFVGQVSLSGCDTFIVHARKAILSGLSPKENREIPPLDYDRVIR 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNL-PQ 237
LK+DFP L I+INGGIK+ +E +N +DGVMLGREAY+NP ++S D YY + P
Sbjct: 195 LKQDFPNLNIVINGGIKSHQEAQALINRGLDGVMLGREAYQNPLILSEVDHIYYGHENPN 254
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
I T + R+ ++ Q++ + + +H LGL GS +F+++LS+
Sbjct: 255 ADIET---LNARITDWVEQKVETG--VPLKFLAKHTLGLYAGHPGSKQFRRMLSENMTKP 309
Query: 298 IDNFQFFLNTL 308
N Q + + L
Sbjct: 310 DANAQLYRDAL 320
>gi|294669488|ref|ZP_06734555.1| hypothetical protein NEIELOOT_01386 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308401|gb|EFE49644.1| hypothetical protein NEIELOOT_01386 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 328
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 203/310 (65%), Gaps = 5/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQITR++WLYTEM A++ G+ L N E+P+A Q+G +EP+
Sbjct: 2 LDWTDRHYRHMARQITRHTWLYTEMINAGAVIYGDPDRFLLKNDGENPVALQLGGSEPQD 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LAK+A +GYDEINLNCGCPS RVQ G FGA LM + LV+DC+ AM+++ + +T
Sbjct: 62 LAKAAAKAAAYGYDEINLNCGCPSPRVQKGAFGACLMKEADLVADCLNAMQEAAPDCAVT 121
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIG+D Y + DFVGT++ C TFIVHARNA+L+ L+PK+NR +P L+Y++V
Sbjct: 122 VKHRIGLDCETDYQPLADFVGTLAEKTDCTTFIVHARNAWLEGLSPKENRDVPPLRYDYV 181
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y LK++FP LEIIINGGIKT EI HL ++DGVM+GRE Y NP LM ++D +Y +
Sbjct: 182 YRLKREFPALEIIINGGIKTNDEIAAHLQHVDGVMVGRECYHNPMLMRDWDRLFYGD--D 239
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ + +++ R+ Y QL + + + RH LGLM + G+ ++++LS LL
Sbjct: 240 HAPVSYAELVGRLKDYAAAQLAAGRGTILRHMARHYLGLMHGLNGARHWRRMLSDAELLK 299
Query: 298 IDNFQFFLNT 307
++ L
Sbjct: 300 PNDPDLILRA 309
>gi|404380033|ref|ZP_10985079.1| tRNA dihydrouridine synthase A [Simonsiella muelleri ATCC 29453]
gi|404294472|gb|EFG30122.2| tRNA dihydrouridine synthase A [Simonsiella muelleri ATCC 29453]
Length = 329
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/314 (47%), Positives = 208/314 (66%), Gaps = 7/314 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQIT+ +WLYTEM AI+ G+ L N E+PIA Q+G ++
Sbjct: 13 LDWTDRHYRYMARQITKNTWLYTEMINAGAIIHGDPNRFLLKNECENPIALQLGGSDSAD 72
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDIT 118
LAK+A ++GYDEINLNCGCPS RVQ G FGA LM + LVS C+ A++D+ DIT
Sbjct: 73 LAKAAAKAAQYGYDEINLNCGCPSPRVQKGAFGACLMNEVNLVSGCLNAIQDAAPNCDIT 132
Query: 119 VKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
+KHRIG+D Y + DFVG ++ S CRTFIVHARNA+L L+PK+NR +P L+Y++V
Sbjct: 133 IKHRIGLDKQTEYQPLADFVGELARSTNCRTFIVHARNAWLDGLSPKENRDVPPLRYDYV 192
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN-LP 236
Y LK++F +LEIIINGGI T ++I HL Y+DGVM+GREAY NP LM ++D +Y + P
Sbjct: 193 YQLKQEFVDLEIIINGGITTNEQIHQHLQYVDGVMVGREAYHNPMLMKSWDAQFYGDTTP 252
Query: 237 QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ T ++INR+ Y + QL N+ + + RH LGLM + G+ ++++LS +LL
Sbjct: 253 EI---TYDELINRLYDYAKIQLAANRGTILRHMARHYLGLMHGLHGARTWRRMLSDADLL 309
Query: 297 TIDNFQFFLNTLNI 310
+ + L L +
Sbjct: 310 KSNRAELLLEALAM 323
>gi|434397477|ref|YP_007131481.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
gi|428268574|gb|AFZ34515.1| tRNA-U16,U17-dihydrouridine synthase [Stanieria cyanosphaera PCC
7437]
Length = 330
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 192/293 (65%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH R RQITR + LYTEM TT AI+ G++ LDF+ EE P+ Q+G + P++
Sbjct: 21 MERTDRHFRYLMRQITRRTLLYTEMITTAAIIHGDRHKLLDFSLEEKPLVLQLGGDHPQE 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AKI + WGYD +NLN GCPS RVQNG FGA LM +P LV+ + M+D+V I +TV
Sbjct: 81 LAQCAKIGEDWGYDAVNLNVGCPSPRVQNGNFGACLMAQPELVATAVAKMQDAVSIPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID+ + Y+ + FV V+ AGCR FIVHAR A+LK L+PK+NR IP L+Y V+
Sbjct: 141 KHRIGIDERDRYEDLAQFVQIVAEAGCRHFIVHARKAWLKGLSPKENRNIPPLRYQDVHR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L I INGGI T ++I LNY+D VM+GR AY +P+L + D + Y
Sbjct: 201 LKQEFPHLLIEINGGIITLEQIKEQLNYVDAVMIGRAAYDDPYLFATVDRDIYQQ--SAT 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR ++ M+ YI K ++ I+RHML L G+ +K+ +S+
Sbjct: 259 PPTRHQVVEAMLPYI--DYWTKKGLKLHGISRHMLQLFAGQPGTKAWKRYISE 309
>gi|319788129|ref|YP_004147604.1| TIM-barrel protein, yjbN family [Pseudoxanthomonas suwonensis 11-1]
gi|317466641|gb|ADV28373.1| TIM-barrel protein, yjbN family [Pseudoxanthomonas suwonensis 11-1]
Length = 337
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 199/298 (66%), Gaps = 12/298 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + ++ LYTEM A+ LG++ L F+ EHP+A Q+G +EP
Sbjct: 20 MDWTDRHCRVFHRLLAPHARLYTEMVHANAVVLGDRGRLLGFDPVEHPVALQLGGSEPGA 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE----- 114
LA + +I +WGYDE+NLNCGCPS+RVQ G FGA LM +P LV++C+ AM +
Sbjct: 80 LANATRIGAEWGYDEVNLNCGCPSDRVQAGRFGACLMREPSLVAECVAAMIEGAAASGRN 139
Query: 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY 174
+ +TVK R+G+D+ + Y+ F+ V++AGCRTF+VHARNA+L+ L+PK+NR++P L+Y
Sbjct: 140 VPVTVKCRLGVDEDHEYERFAAFIDAVAAAGCRTFVVHARNAWLQGLSPKENREVPPLRY 199
Query: 175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 234
++ + LK++ P LEI++NGGI ++ ++ L ++DGVMLGR AY +P+L+ D+ Y
Sbjct: 200 DWAWRLKRERPGLEILVNGGIASEAQVHEQLAHVDGVMLGRAAYHDPYLLHRLDVALYGG 259
Query: 235 LPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++ R ++ R+ Y+ QL + + ITRH+LGL G F+Q+LS+
Sbjct: 260 ----ELADRASLLRRLRPYVEAQLASGLA--LKHITRHVLGLFHGQPGGRLFRQVLSE 311
>gi|157373905|ref|YP_001472505.1| tRNA-dihydrouridine synthase A [Shewanella sediminis HAW-EB3]
gi|157316279|gb|ABV35377.1| TIM-barrel protein, YjbN family [Shewanella sediminis HAW-EB3]
Length = 327
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 197/293 (67%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R R ++ LYTEM TT AI+ K L +N+EEH +A Q+G + L
Sbjct: 19 LDWTDRHYRYMARLMSAELLLYTEMVTTGAIIHGKGDYLAYNSEEHALALQLGGSNAHDL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR+ V+I +TVK
Sbjct: 79 AICAKLAADRGYDEINLNVGCPSDRVQNGRFGACLMAEPKLVAECVTAMREVVDIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY F+ +FV TV AGC TFIVHAR A+LK L+PK+NR+IP L Y+ VY L
Sbjct: 139 TRIGIDEQDSYPFLTEFVETVRDAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQYK 239
K+D+PEL I INGG+K+ E HL +DGVM+GREAY+NP++++ D S+ P
Sbjct: 199 KQDYPELSISINGGVKSLDECRTHLTKLDGVMVGREAYQNPYMLAEVDQQLCGSDRP--- 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R ++ + I YI + L + +N I+RHM GL + GS +++ +S+
Sbjct: 256 VLSRDAVLEKFIPYIEKHLQSG--GRLNHISRHMTGLFQGEPGSRVWRRYISE 306
>gi|444920303|ref|ZP_21240146.1| tRNA-dihydrouridine synthase A [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508622|gb|ELV08791.1| tRNA-dihydrouridine synthase A [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 325
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 198/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+N TDRHCR F+R +++ + LYTEM TT AIL G+ L FNA+E PIA Q+G ++PK
Sbjct: 13 LNWTDRHCRYFYRLMSKQALLYTEMVTTGAILHGDMDMHLRFNAKESPIALQLGGSDPKD 72
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
L +AKI + +GY EINLNCGCPS+RVQ G FGA LMT+P LV++C AM+ +V I +T+
Sbjct: 73 LQTAAKIAEDYGYTEINLNCGCPSDRVQKGRFGACLMTEPELVAECFDAMQSAVNIPVTI 132
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K+RIGID + Y FV F+ VS AGC+TF VHAR A+L L+PK+NR+IP L Y+ VY
Sbjct: 133 KNRIGIDHQDDYAFVHRFIDVVSQAGCKTFTVHARKAWLSGLSPKENREIPPLDYDRVYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPEL +I+NGGI++ ++ +N +DGVMLGR Y +PFLM+ D Y+ + +
Sbjct: 193 LKHDFPELMLILNGGIQSPEQGLSVMNNLDGVMLGRAVYHSPFLMNEVDHLYFGDEASDQ 252
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P D++ + Y+ +L ++ I RH+LGL S ++++ LS+
Sbjct: 253 SP--FDVLAALKPYVESELAAG--VRVHHIGRHLLGLFNGYPKSRQWRRHLSE 301
>gi|422648762|ref|ZP_16711880.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330962294|gb|EGH62554.1| tRNA-dihydrouridine synthase A [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 300
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 197/301 (65%), Gaps = 11/301 (3%)
Query: 13 RQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 71
R +++++ LYTEM T A+L G+++ L + EHP+A Q+G + LA A++ ++ G
Sbjct: 2 RLLSKHALLYTEMVATGALLHGDRERFLRHDDTEHPLALQLGGSTAADLAACARLAEEAG 61
Query: 72 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY 131
YDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TVKHRIGI+ +SY
Sbjct: 62 YDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAMRDAVGIPVTVKHRIGINGRDSY 121
Query: 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 191
+ DFVG V AGC++F VHAR A L+ L+PK+NR IP L+Y+ V LK DFPELEI++
Sbjct: 122 AELCDFVGKVQEAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKTDFPELEIVL 181
Query: 192 NGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMI 251
NGGIKT ++ HL DGVMLGREAY NP+L+++ D + + + +R D + M
Sbjct: 182 NGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQQLFGS--TAPVISRYDALESMR 239
Query: 252 LYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS------KPNLLTIDNFQFFL 305
YI + + N++ +TRHMLGL G+ +F+Q+LS + +L +D FL
Sbjct: 240 PYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLSVDIHKAENPMLLLDQAAAFL 297
Query: 306 N 306
Sbjct: 298 Q 298
>gi|428306689|ref|YP_007143514.1| tRNA-U16,U17-dihydrouridine synthase [Crinalium epipsammum PCC
9333]
gi|428248224|gb|AFZ14004.1| tRNA-U16,U17-dihydrouridine synthase [Crinalium epipsammum PCC
9333]
Length = 334
Score = 283 bits (723), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 194/293 (66%), Gaps = 6/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQITR + LYTEM T+ AIL G+K+ L F+ EE P++ QVG + PK
Sbjct: 27 MDRTDRHCRYFMRQITRCTLLYTEMVTSAAILHGDKERLLGFSPEEKPLSLQVGGDNPKD 86
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I + GY+EINLN GCPS+RVQNG FGA LM +P V+DCI AM + I +TV
Sbjct: 87 LAECARIAEGMGYNEINLNVGCPSDRVQNGNFGACLMAQPYKVADCIAAMIQATNIPVTV 146
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGIDD++SY+ + +FV VS AGC+ F VHAR A+L+ L+PK+NR IP L+Y V+
Sbjct: 147 KHRIGIDDLDSYEDMTNFVRIVSDAGCQRFTVHARKAWLQGLSPKENRDIPPLRYGDVHK 206
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP L I INGG +++ L ++D VM+GR AY NP++ + D Y +
Sbjct: 207 LKQEFPHLFIEINGGFTNLQQVKEQLQFVDAVMIGRAAYDNPYIFAIADGEIYG---KDT 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR ++ M+ YI K +N ITRHML L GS +K+ L++
Sbjct: 264 APTRHQVVEAMLPYI--DYWAKKGLKLNKITRHMLQLFNGQPGSRAWKRYLTE 314
>gi|312796563|ref|YP_004029485.1| NIFR3-like protein [Burkholderia rhizoxinica HKI 454]
gi|312168338|emb|CBW75341.1| NIFR3-like protein [Burkholderia rhizoxinica HKI 454]
Length = 233
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 126/201 (62%), Positives = 158/201 (78%), Gaps = 1/201 (0%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHRQ++R+ +LYTEM TT A+L G+ L F +E PIA Q+G +EP +
Sbjct: 31 MDWTDRHCRYFHRQLSRHVYLYTEMVTTGALLFGDVARHLSFTPQEAPIALQLGGSEPDE 90
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AK+ ++WGYDE+NLNCGCPS RVQ G FGA LM + LV+DC+KAM D+V + +TV
Sbjct: 91 LARCAKLSEQWGYDEVNLNCGCPSERVQRGAFGACLMKEATLVADCVKAMCDAVAVPVTV 150
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D I+ Y FVRDFVGTV+ GCR FIVHARNA LK L+PK+NR+IP LKY++ Y
Sbjct: 151 KHRIGVDAIDDYGFVRDFVGTVAQGGCRVFIVHARNAILKGLSPKENREIPPLKYDYAYR 210
Query: 180 LKKDFPELEIIINGGIKTKKE 200
LK+DFPE EI+INGGIKT E
Sbjct: 211 LKRDFPEFEIVINGGIKTLDE 231
>gi|114765460|ref|ZP_01444570.1| tRNA-dihydrouridine synthase A [Pelagibaca bermudensis HTCC2601]
gi|114542170|gb|EAU45201.1| tRNA-dihydrouridine synthase A [Roseovarius sp. HTCC2601]
Length = 315
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 130/295 (44%), Positives = 197/295 (66%), Gaps = 7/295 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R + LY+EM T A++ G H LD+N EEHP+A Q+G ++P++
Sbjct: 2 MDWTDRHCRYLHRLLSRRALLYSEMVTAPALVRGGALHLLDYNPEEHPVALQLGGSDPEE 61
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A + ++ GYD+I+LNCGCPS+RVQ+G FGA+LM P LV+DC+ AMR++V+ID+TV
Sbjct: 62 LARAATLGEQAGYDQIDLNCGCPSDRVQSGTFGAVLMRSPELVADCVAAMREAVKIDVTV 121
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D+ D + DF+ +S AGC ++HAR A+L+ L+PK+NR IP L Y V
Sbjct: 122 KCRIGVDEQEPRDVLPDFLQKISGAGCERVVIHARKAWLQGLSPKENRDIPPLDYEIVRE 181
Query: 180 LKKDFPELEIIINGGIKTKKEID-LHLNYIDGVMLGREAYKNPF-LMSNFDLNYYSNLPQ 237
+K+ FP+L + INGGI + L + +DGVM+GR AY P+ +++N D Y
Sbjct: 182 MKRAFPQLHVSINGGITDLDTAEALLADGLDGVMIGRAAYHQPWDILANADARIYGEAAG 241
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + + M+ YI + L + ++ ITRHMLGL G+ +++++LS+
Sbjct: 242 PVSPE--EAVQAMLPYIGRHLASG--GRLHQITRHMLGLFAGRPGARQWRRVLSE 292
>gi|218246535|ref|YP_002371906.1| tRNA-dihydrouridine synthase A [Cyanothece sp. PCC 8801]
gi|218167013|gb|ACK65750.1| TIM-barrel protein, yjbN family [Cyanothece sp. PCC 8801]
Length = 331
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/295 (47%), Positives = 203/295 (68%), Gaps = 9/295 (3%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAI-LGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH R F RQIT+ + LYTEM TQAI G++ L F+ EE P++ Q+G ++P++
Sbjct: 15 MERTDRHFRYFMRQITQDTLLYTEMIVTQAIRYGDRTKLLGFSPEEKPLSLQLGGDDPQE 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + +GYDE+NLN GCPS+RVQ+G FGA LM +P LV+ C++AM+ V I IT+
Sbjct: 75 LAECAMIAEDFGYDEVNLNVGCPSDRVQSGNFGACLMLQPELVARCVEAMQKKVNIPITI 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIG+D+ + Y+ + +FV VS AGC+ F VHAR A+LK L+PK+NR IP LKY VY
Sbjct: 135 KHRIGVDERDRYEDLANFVKIVSDAGCQRFTVHARKAWLKGLSPKENRTIPPLKYEEVYQ 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN--LPQ 237
LK++F +L I INGGI T +I+ HL ++DGVM+GR AY NP+L + D + Y +P
Sbjct: 195 LKQEFSQLFIEINGGIITLDQIEHHLQFVDGVMIGRAAYDNPYLFATVDRDIYGQNIIP- 253
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
PTR ++ +M+ YI +NN +++I+RH+L + + G+ +K+ +S+
Sbjct: 254 ---PTRHQVVEKMLPYIDYWVNNG--LKLHAISRHILAIFGGVPGTKAWKRHISE 303
>gi|329119729|ref|ZP_08248409.1| tRNA dihydrouridine synthase A [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464178|gb|EGF10483.1| tRNA dihydrouridine synthase A [Neisseria bacilliformis ATCC
BAA-1200]
Length = 346
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++ LYTEM A++ G+ L N E+P+A Q+G +EP
Sbjct: 22 LDWTDRHFRFLARQISRHALLYTEMVNAGAVVHGDAARFLLKNDCENPVALQLGGSEPAL 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LAK+A WGYDEINLNCGCPS RVQ G FGA LM + LV+DC+ AM+D+ + +T
Sbjct: 82 LAKAAAEAAAWGYDEINLNCGCPSPRVQKGAFGACLMNEVALVADCLNAMQDAAPDCAVT 141
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIGID Y + DFVGT+S C FIVHARNA+L L+PK+NR +P LKY++V
Sbjct: 142 VKHRIGIDRQTDYQPLADFVGTLSEKTACTVFIVHARNAWLDGLSPKENRDVPPLKYDYV 201
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
Y LK++FP L+I++NGGIKT E LHL + DGVM+GRE Y NP LM ++D +Y + +
Sbjct: 202 YRLKREFPALQIVLNGGIKTNAEAALHLQHTDGVMVGRECYHNPMLMRDWDRLFYGDTRE 261
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+ ++ R+ Y ++L + + + ITRH LGLM + G+ +++++LS LL
Sbjct: 262 PAV--YAELAERLRDYAAERLADGRGSILRHITRHCLGLMHGLNGARQWRRMLSDAELLK 319
Query: 298 IDNFQFFLNT 307
++ + +
Sbjct: 320 DNDPELIMRA 329
>gi|319779632|ref|YP_004130545.1| tRNA dihydrouridine synthase A [Taylorella equigenitalis MCE9]
gi|397661863|ref|YP_006502563.1| tRNA-dihydrouridine synthase A [Taylorella equigenitalis ATCC
35865]
gi|317109656|gb|ADU92402.1| tRNA dihydrouridine synthase A [Taylorella equigenitalis MCE9]
gi|394350042|gb|AFN35956.1| tRNA-dihydrouridine synthase A [Taylorella equigenitalis ATCC
35865]
gi|399114927|emb|CCG17723.1| tRNA-dihydrouridine synthase A [Taylorella equigenitalis 14/56]
Length = 325
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/297 (47%), Positives = 190/297 (63%), Gaps = 6/297 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQA-ILGNKKHCLDFNAEEHPIAFQVGDNEPKK 59
+++TD+HCR FHR ++ + L+TEM TT A I G+ LDFN EEHP+A Q+G EPK
Sbjct: 18 LDVTDKHCRFFHRLLSPEALLFTEMVTTGALIFGDVPRHLDFNVEEHPVALQLGGAEPKD 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA +K+ ++WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC AM + + I++
Sbjct: 78 LAYCSKLGEEWGYDEINLNCGCPSDRVQKGSFGACLMLEPDLVADCWVAMNECTTVPISI 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHR+G+DD N Y+FV FV + GCR FI HARNAFLK L+PK NR IP LKY++V
Sbjct: 138 KHRLGVDDHNDYEFVYHFVSKLYDVGCRLFITHARNAFLKGLSPKDNRSIPPLKYDYVSR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+ +INGGI + L DG+MLGR A+ P N + + +
Sbjct: 198 LKADFPDANFVINGGISNYELAMQLLEEFDGIMLGRLAWHEPRAFMNIATTEFE---RSE 254
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
P I + +I Y ++ + N ++ + +LG M +KG+ KF+QILS P+LL
Sbjct: 255 PPNFTFIRDALIGYAKKNIENG--GSLREVVNPVLGFMNGLKGARKFRQILSNPDLL 309
>gi|349575044|ref|ZP_08886970.1| tRNA dihydrouridine synthase A [Neisseria shayeganii 871]
gi|348013365|gb|EGY52283.1| tRNA dihydrouridine synthase A [Neisseria shayeganii 871]
Length = 337
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/311 (45%), Positives = 203/311 (65%), Gaps = 7/311 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQI+R++WLYTEM A++ G++ L + E P+A Q+G ++P
Sbjct: 17 LDWTDRHYRYMARQISRHTWLYTEMINAGAVVYGDEARFLLKDECEQPVALQLGGSDPAL 76
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
LA +AK + YDEINLNCGCPS RVQ G FGA LM + LV+DC+ AM+++ E +T
Sbjct: 77 LAAAAKKAAAYAYDEINLNCGCPSPRVQKGAFGACLMQEADLVADCLNAMQEAAPECAVT 136
Query: 119 VKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VKHRIG+D Y V DFVGT++ CRTFIVHARNA+L L+PK+NR +P LKY +V
Sbjct: 137 VKHRIGVDRQTEYQTVADFVGTLARKTACRTFIVHARNAWLDGLSPKENRDVPPLKYEYV 196
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLP 236
Y LK++FPELEIIINGGI ++I HL +DGVM+GRE Y NP +M ++D +Y S LP
Sbjct: 197 YRLKREFPELEIIINGGITDNEQIAAHLQQVDGVMVGRECYHNPMIMRDWDQRFYGSRLP 256
Query: 237 QYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
+ T ++++R+ Y+ Q+ + + + RH LGLM +K + ++++LS LL
Sbjct: 257 ET---THAELVDRLYRYMAAQIAAGRGTTVRHMARHYLGLMHGLKNARTWRRMLSDAALL 313
Query: 297 TIDNFQFFLNT 307
+ + L
Sbjct: 314 KPNRPELILEA 324
>gi|415770748|ref|ZP_11485017.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656654|gb|EGY74263.1| tRNA-dihydrouridine synthase A [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 270
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/237 (55%), Positives = 171/237 (72%), Gaps = 1/237 (0%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ +R++ LYTEM TTQAI+ K LDF+ E P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSRHALLYTEMVTTQAIIHAKYDHLDFDPAEQPVALQLGGSDPAQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A++ ++ GY EINLN GCPS+RVQNG FGA LM K LV++C++ M+++V I +TVK
Sbjct: 79 KHCAQLAEQRGYQEINLNVGCPSDRVQNGMFGACLMAKAELVAECVQQMQEAVRIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD +SYDF+ DF+ V AGCR FIVHAR A+L L+PKQNR+IP L Y VY L
Sbjct: 139 TRIGIDDFDSYDFLCDFIEKVQQAGCREFIVHARKAWLSGLSPKQNREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLP 236
K+DFP L I INGGIKT E+ HL +DGVM+GREAY+NP L+ D + +N P
Sbjct: 199 KRDFPHLLISINGGIKTIDEMQQHLQRVDGVMVGREAYQNPSLLGYIDQALFNANAP 255
>gi|224588182|gb|ACN58806.1| tRNA dihydrouridine synthase A [uncultured bacterium BLR9]
Length = 334
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 192/296 (64%), Gaps = 13/296 (4%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+ HR ++R++ LYTEM T +A++ G++ L F+ EHP+A Q+G EP +
Sbjct: 21 MDCTDRHCRVLHRLLSRHALLYTEMVTAEAVIRGDRARLLGFSPAEHPVALQLGGAEPAR 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++AKI +GYDEINLN GCPS+RVQ+G FGA LM +PL V DC+ AMR +V + +TV
Sbjct: 81 LAEAAKIGADFGYDEINLNVGCPSDRVQSGCFGAALMKEPLRVGDCVAAMRAAVSVPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+D+ + + + + AG F VHAR A+L L+PK+NR++P L Y+ VY
Sbjct: 141 KCRIGVDEQEPREALPALIEACTRAGVTAFAVHARKAWLSGLSPKENREVPPLDYSLVYA 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ PEL I+INGGI + E + HL ++DGVMLGR AY+ P +++ D ++ +
Sbjct: 201 LKRARPELTIVINGGIGSLDEAEAHLPHVDGVMLGRAAYQTPAILAEVDSRFFGEGAR-- 258
Query: 240 IPTRIDI---INRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
DI + YI +L +N++T+HMLGL I G+ +F++ LS+
Sbjct: 259 -----DIGEAVEAYAAYIGARLAEG--VPLNAMTKHMLGLFNGIPGARQFRRHLSE 307
>gi|389696345|ref|ZP_10183987.1| tRNA dihydrouridine synthase A [Microvirga sp. WSM3557]
gi|388585151|gb|EIM25446.1| tRNA dihydrouridine synthase A [Microvirga sp. WSM3557]
Length = 334
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 197/305 (64%), Gaps = 5/305 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR ++R + LYTEM TT A++ G ++ L F+A EHP+A Q+G ++P+
Sbjct: 12 MDWTDRHCRAFHRVMSRRARLYTEMVTTGAVIHGPRERLLGFSAVEHPVAVQLGGSDPED 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I ++GYDEINLN GCPS+RVQNG FGA LM +P+LV +C+ AM+ +V + +TV
Sbjct: 72 LAQAARICAEFGYDEINLNVGCPSDRVQNGRFGACLMQEPVLVGECVAAMKAAVSLPVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD ++ + + V +AGC VHAR A+LK L+PK+NR IP L YN VY
Sbjct: 132 KCRIGVDDQDTEEALNRLTDCVVAAGCDELTVHARKAWLKGLSPKENRDIPPLDYNRVYR 191
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+ P+L I INGGIKT EI HL ++DGVMLGR AY P ++ D + P
Sbjct: 192 LKQARPDLPIAINGGIKTWDEIREHLKHMDGVMLGRVAYHEPEILLAVDPELHGEEP--P 249
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
+ + ++ YI QL K + +++ITRHMLGL G+ +++ L+ +
Sbjct: 250 VADGFEAVDAYEPYIAAQL--AKGERLSNITRHMLGLFTGRPGARAYRRHLATEAVKPGA 307
Query: 300 NFQFF 304
N Q
Sbjct: 308 NLQVL 312
>gi|172037930|ref|YP_001804431.1| tRNA-dihydrouridine synthase A [Cyanothece sp. ATCC 51142]
gi|171699384|gb|ACB52365.1| putative dihydrouridine synthase TIM-barrel protein nifR3
[Cyanothece sp. ATCC 51142]
Length = 342
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 203/309 (65%), Gaps = 5/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQITR++ LYTEM + AI+ G++ LDF+ EE P++ Q+G + P++
Sbjct: 23 MDYTDRHFRYFMRQITRHTLLYTEMIVSAAIINGDRPKLLDFSPEEKPLSLQIGGDNPQE 82
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + WGYDE+NLN GCPS+RVQ+G FGA LM P LV+ C++ M+ V I +TV
Sbjct: 83 LAECAIIGEDWGYDEVNLNVGCPSDRVQSGHFGACLMANPELVAQCVEKMQQGVTIPVTV 142
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID +SY+ + FV VS AGC+ F VHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 143 KHRIGIDHQDSYEDMARFVKIVSEAGCQRFTVHARKAWLQGLSPKENRNIPPLRYQEVYR 202
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+L I INGGI +++ HL +D VM+GR AY NP+L++ D + Y + +
Sbjct: 203 LKQEFPQLFIEINGGITNLEQVRNHLKLVDAVMIGRSAYDNPYLLATVDRDIYRD--KVT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
TR II +M+ YI ++ ++ I+RH+L + I G+ +K+ +S+ L
Sbjct: 261 QLTRHQIIEKMLPYIDDWVSRG--HKLHKISRHLLAIFSGIPGTKAWKRHISENAHLPGA 318
Query: 300 NFQFFLNTL 308
+ Q + L
Sbjct: 319 DSQVIVQGL 327
>gi|354556623|ref|ZP_08975915.1| TIM-barrel protein, yjbN family [Cyanothece sp. ATCC 51472]
gi|353551397|gb|EHC20801.1| TIM-barrel protein, yjbN family [Cyanothece sp. ATCC 51472]
Length = 337
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 203/309 (65%), Gaps = 5/309 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQITR++ LYTEM + AI+ G++ LDF+ EE P++ Q+G + P++
Sbjct: 18 MDYTDRHFRYFMRQITRHTLLYTEMIVSAAIINGDRPKLLDFSPEEKPLSLQIGGDNPQE 77
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A I + WGYDE+NLN GCPS+RVQ+G FGA LM P LV+ C++ M+ V I +TV
Sbjct: 78 LAECAIIGEDWGYDEVNLNVGCPSDRVQSGHFGACLMANPELVAQCVEKMQQGVTIPVTV 137
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID +SY+ + FV VS AGC+ F VHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 138 KHRIGIDHQDSYEDMARFVKIVSEAGCQRFTVHARKAWLQGLSPKENRNIPPLRYQEVYR 197
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++FP+L I INGGI +++ HL +D VM+GR AY NP+L++ D + Y + +
Sbjct: 198 LKQEFPQLFIEINGGITNLEQVRNHLKLVDAVMIGRSAYDNPYLLATVDRDIYRD--KVT 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTID 299
TR II +M+ YI ++ ++ I+RH+L + I G+ +K+ +S+ L
Sbjct: 256 QLTRHQIIEKMLPYIDDWVSRG--HKLHKISRHLLAIFSGIPGTKAWKRHISENAHLPGA 313
Query: 300 NFQFFLNTL 308
+ Q + L
Sbjct: 314 DSQVIVQGL 322
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,730,256,589
Number of Sequences: 23463169
Number of extensions: 197376361
Number of successful extensions: 471400
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5508
Number of HSP's successfully gapped in prelim test: 2566
Number of HSP's that attempted gapping in prelim test: 458379
Number of HSP's gapped (non-prelim): 8399
length of query: 311
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 169
effective length of database: 9,027,425,369
effective search space: 1525634887361
effective search space used: 1525634887361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.9 bits)