BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2386
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1
Length = 326
Score = 311 bits (797), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V++ +TVK
Sbjct: 73 AKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DF L I INGG+K+ +E +HL ++DGVM+GREAY++P+L+++ D + SN P
Sbjct: 193 LKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 250
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M YI QL K + ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQNMPGARQWRRHISE 301
>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=dusA PE=3 SV=2
Length = 326
Score = 310 bits (795), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L +N EEHP+A Q+G + P+ L
Sbjct: 13 LDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V+I +TVK
Sbjct: 73 ATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DFV VS GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LKKDF L I INGG+K+ +E HL ++DGVM+GREAY++P+L+++ D + + Q
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGS--QSP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
I R I+ M YI QQL N + +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 IKKRRQIVEEMYPYIEQQLANGAY--LGHMTRHMLGLFQNMPGARQWRRHISE 301
>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=dusA PE=3 SV=1
Length = 327
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM TT AI+ K L+F+ E+P+A Q+G ++P +L
Sbjct: 19 LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPTQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K LV+DC+ AM+ V I +TVK
Sbjct: 79 AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ +FV V AGC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L + INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P +
Sbjct: 199 KRDFPHLLMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + +M YI QQL+ +N + RHMLG ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 214/312 (68%), Gaps = 9/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRH R F RQ+TR++ LYTEM T QAIL G+++ L+F+ EE P+A Q+G ++P+
Sbjct: 19 MDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGDRQRLLNFSPEEKPVALQLGGDDPQL 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ A+I Q WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ C+ AM+ +VEI +TV
Sbjct: 79 LAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAVEIPVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGID +SY+ + FV V++AGC+ F VHAR A+L+ L+PK+NR IP L+Y VY
Sbjct: 139 KHRIGIDHRDSYEDLVHFVEIVANAGCQRFTVHARKAWLQGLSPKENRTIPPLRYEDVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
LKKDFP+L I INGGI ++I HL+++D VM+GR AY+NP+L + D + Y +NL
Sbjct: 199 LKKDFPQLLIEINGGITQTEQIQQHLSHVDAVMVGRAAYENPYLFATVDRDIYHKTNL-- 256
Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+P+R +II RM+ Y+ ++L + +N ITRH+L L + +++ LS LL
Sbjct: 257 --VPSRAEIIERMLPYVEERLRHG--DRLNQITRHLLSLFNGQPRAKFWRRTLSDSTLLA 312
Query: 298 IDNFQFFLNTLN 309
+ L
Sbjct: 313 SAGPELLQTALQ 324
>sp|Q88KX0|DUSA_PSEPK tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain
KT2440) GN=dusA PE=3 SV=1
Length = 336
Score = 308 bits (790), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R ++R + LYTEM TT A+L N H L +A EHP+A Q+G + P
Sbjct: 26 MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V +TV
Sbjct: 86 LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR+IP L+Y+
Sbjct: 146 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LK+DFP+LEI++NGGIKT E HL DGVMLGREAY NP+L++ D + S+ P
Sbjct: 206 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 263
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ +R + + ++ YI + + ++ +TRH+LGL + KG+ +F+Q+LS
Sbjct: 264 -VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 314
>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3
SV=1
Length = 327
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L+ ++ +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301
>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusA
PE=3 SV=1
Length = 332
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++ L ++ EHP+A Q+G + P +
Sbjct: 22 MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ GYDE+NLN GCPS+RVQ+ GA LM P LV+DC+KAM D+VEI +TV
Sbjct: 82 LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVG V AGCR+F VHAR A L+ L+PK+NR++P L+Y
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
LKKDFP+LEI++NGGIKT + HL DGVMLGREAY NP+L++ D + S P
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261
Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
+R + + R+ YI R Q + + +TRH+LGL + GS +F+Q+LS
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315
Query: 298 IDNFQFFLNTLNI 310
D + F L +
Sbjct: 316 ADPLRVFDQALEL 328
>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1
Length = 327
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++++ LYTEM T AI+ K LDF+ +E+P+A Q+G ++P++L
Sbjct: 19 LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
AK+ ++ GY EINLN GCPS+RVQNG FGA LM K LV+DC++ M+ +V+I +TVK
Sbjct: 79 KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+++SY+F+ DF+ V GC+ FI+HAR A+L L+PK+NR+IP L Y VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQL 198
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP L I INGGIKT +E+ HL Y+DGVM+GREAY+NP L+ D + P I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
T + + M+ YI QQL+ ++N I RH+LG +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 20 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 80 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 307
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 307
>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1
Length = 332
Score = 300 bits (768), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTQLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDA 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>sp|Q8ZJ14|DUSA_YERPE tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1
Length = 345
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR +T+ + LYTEM TT AI+ K L ++ ++HP+A Q+G ++P+ L
Sbjct: 28 LDWTDRHCRYFHRLLTKQALLYTEMVTTGAIIHGKADYLAYSEQDHPVALQLGGSDPQAL 87
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ ++ GY+EINLN GCPS+RVQNG FGA LM + LV+DCIKAMRD+V I +TVK
Sbjct: 88 AHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVK 147
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGID ++SY+F+ +FV TV+ G C F +HAR A+L L+PK+NR++P L Y VY
Sbjct: 148 TRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQ 207
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L I INGG+KT E HL ++DGVM+GREAY+NP +++ D + P
Sbjct: 208 LKRDFPALTIAINGGVKTLAEAKEHLKHLDGVMMGREAYQNPGILTQVDRELFD--PNAP 265
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ + I + YI Q+L+ + ITRH+LG+ + I G+ ++++ LS+
Sbjct: 266 VVDSVKAIEALYPYIEQELSQGAY--LGHITRHILGIFQGIPGARQWRRHLSE 316
>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3
SV=1
Length = 332
Score = 300 bits (767), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P +L
Sbjct: 21 LDWTDRHCRYFLRLLSRQTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQL 80
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 81 AHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 140
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 141 TRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D +
Sbjct: 201 LKRDFPHLTMSINGGIKSLEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDT 260
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L+ + ITRHMLGL + I G+ ++++ LS+
Sbjct: 261 DP--VAVVRAMYPYIERELSQGAY--LGHITRHMLGLFQGIPGARQWRRYLSE 309
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI +L+ + I RHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIEHELSQGTY--LGHIIRHMLGLFQGIPGARQWRRYLSE 307
>sp|Q7VNV2|DUSA_HAEDU tRNA-dihydrouridine synthase A OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusA PE=3 SV=1
Length = 323
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 199/292 (68%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ T RHCR FHRQ ++ + LYTEM T AIL K L+++ E P+A Q+G ++P +L
Sbjct: 16 LDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKYDLLEYDPAEQPVALQLGGSDPTQL 75
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK++Q GY EINLN GCPS+RVQNG FGA LM LV+DCIKAM+D V+I +T+K
Sbjct: 76 ANCAKLVQARGYTEINLNVGCPSDRVQNGMFGACLMANADLVADCIKAMQDVVDIPVTIK 135
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
HRIGID ++SY F+ DF+ + + FIVHAR A+L L+PK+NR+IP L Y VY L
Sbjct: 136 HRIGIDTLDSYAFLCDFIDKIQPYS-QDFIVHARKAWLSGLSPKENREIPPLDYERVYQL 194
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+DFP+L I INGGIKT EI HL +DGVM+GREAY+NP L+ D + Q I
Sbjct: 195 KRDFPQLNISINGGIKTIDEIKQHLTKVDGVMVGREAYQNPALLGEIDQQLFDQ-NQPLI 253
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
RI + N M+ YI QQL +K +N I RHMLG +N KG+ ++++ LS+
Sbjct: 254 TARIAVEN-MLPYIEQQL--SKGVYLNHIVRHMLGAFQNCKGARQWRRHLSE 302
>sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain
MR-1) GN=dusA PE=3 SV=1
Length = 335
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 199/292 (68%), Gaps = 4/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVEL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D + +
Sbjct: 202 KRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGSTK--AV 259
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L +N ITRHM+GL + + G+ +++ LS+
Sbjct: 260 MSREAVIEAMLPYIEAHLQVG--GRLNHITRHMIGLFQGLPGARAWRRYLSE 309
>sp|Q884G7|DUSA_PSESM tRNA-dihydrouridine synthase A OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusA PE=3 SV=1
Length = 336
Score = 288 bits (736), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 196/292 (67%), Gaps = 5/292 (1%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 26 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAG 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 146 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 206 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSV--AP 263
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + + N++ +TRHMLGL G+ +F+Q+LS
Sbjct: 264 VISRHAALESMRPYIAAHIASG--GNMHHVTRHMLGLGLGFPGARRFRQLLS 313
>sp|Q8P3X4|DUSA_XANCP tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusA PE=3 SV=1
Length = 335
Score = 267 bits (683), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 191/293 (65%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A++ G+++ + F+A EHP+A Q+G ++P
Sbjct: 21 MDWTDRHCRVFHRLLAPSARLYTEMVHANAVIHGDRQRLIGFDAVEHPLALQLGGSDPAL 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I Q WGYDEINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM + + +TV
Sbjct: 81 LAQAAQIAQAWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVAAMCAATALPVTV 140
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+DD + Y F+ V AG +VHARNA+LK L+PK+NR++P L+Y++ Y
Sbjct: 141 KCRLGVDDDDDYAVFAGFIDQVVGAGAAMVVVHARNAWLKGLSPKENREVPPLRYDWAYR 200
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L +++NGGI + + HL + DGVMLGR AY +P+++ + S P+
Sbjct: 201 LKQERPALPVVLNGGIASVEASLAHLQHTDGVMLGRAAYHDPYVLHQLEAA-LSGRPER- 258
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R D++ Y++ QL+ + +TRH+LGL G F+Q+LS+
Sbjct: 259 --ARADLLQAYQPYVQAQLDQGLA--LKHMTRHILGLFHGQPGGRVFRQVLSE 307
>sp|Q8PFF8|DUSA_XANAC tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusA PE=3 SV=1
Length = 334
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 186/293 (63%), Gaps = 7/293 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR+FHR + + LYTEM A++ G++ + F+ EHP+A Q+G ++P
Sbjct: 20 MDWTDRHCRVFHRLLAPSARLYTEMVHANAVIHGDRARLIGFDPVEHPLALQLGGSDPAL 79
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A I Q+WG+DEINLNCGCPS+RVQ G FGA LM +P LV++C+ AM + + ITV
Sbjct: 80 LAQAAAIAQEWGFDEINLNCGCPSDRVQAGRFGACLMREPALVAECVAAMCAATHLPITV 139
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G+DD + Y FV V +AG +VHARNA+LK L+PK+NR++P L+Y++ Y
Sbjct: 140 KCRLGVDDDDDYALFARFVDQVVAAGAAMVVVHARNAWLKGLSPKENREVPPLRYDWAYR 199
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK++ P L +++NGGI + HL + DGVMLGR AY +P+++ D + L Q
Sbjct: 200 LKQERPGLPVVLNGGIVAVEPAIAHLQHADGVMLGRAAYHDPYVLHCLD----AALNQRP 255
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
R ++ Y+ QL + +TRH+LGL G F+Q+LS+
Sbjct: 256 EQPRESLLRAYQPYVESQLAQG--LGLKHMTRHVLGLFHGQPGGRAFRQVLSE 306
>sp|Q87AY2|DUSA_XYLFT tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1
Length = 332
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/312 (41%), Positives = 193/312 (61%), Gaps = 8/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
MN TDR+CR+FHR + + LYTEM +A++ G+++ L F + E P+A Q+G +EP
Sbjct: 24 MNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFASVEQPVALQLGGSEPAL 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+A I WGY EINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM V + +TV
Sbjct: 84 LAKAASIAVDWGYSEINLNCGCPSDRVQAGSFGACLMREPALVADCVAAMAAVVSVPVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
K R+G+++ + Y FV V ++ R +VHARNA+L+ L+PK+NR+IP L+Y++VY
Sbjct: 144 KCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVY 203
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++ PEL +++NGGI + + HL +DGVMLGR AY++P+++ F Y L
Sbjct: 204 RLKRECPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDPYILHQF----YCALSNA 259
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+ R ++ + Y+ L + I RH+LGL G F+Q+L++ +
Sbjct: 260 PVLPRALLLRALRPYVEAWLEQG--VTLRHIVRHLLGLFHGQPGGRVFRQVLTQGGQRSD 317
Query: 299 DNFQFFLNTLNI 310
++ L+I
Sbjct: 318 ADWSLVEQALSI 329
>sp|Q9PGB5|DUSA_XYLFA tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain 9a5c)
GN=dusA PE=3 SV=1
Length = 340
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 8/312 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
MN TDR+CR+FHR + + LYTEM +A++ G+++ L F + E P+A Q+G +EP
Sbjct: 24 MNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFASVEQPVALQLGGSEPAL 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LAK+A+I WGY EINLNCGCPS+RVQ G FGA LM +P LV+DC+ AM V + +TV
Sbjct: 84 LAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVADCVAAMAAVVSVPVTV 143
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
K R+G+++ + Y FV VS A R +VHARNA+L+ L+PK+NR+IP L+Y++VY
Sbjct: 144 KCRLGVNEDDDYGRFAKFVDWVSRASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVY 203
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
LK++ PEL +++NGGI + + HL +DGVMLGR AY++P+++ FD +
Sbjct: 204 RLKRERPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDPYILHQFDCALSNAPLLP 263
Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
+ + + +++ Q L + I RH+ GL G F+Q+L++ +
Sbjct: 264 RALLLRALRPYVEVWLEQGL------TLRHIVRHLFGLFHGQPGGRVFRQVLTQGGQRSD 317
Query: 299 DNFQFFLNTLNI 310
++ L+I
Sbjct: 318 ADWSLVEQALSI 329
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 39/256 (15%)
Query: 11 FHRQITRYS--WLYTEMFTTQAILGNKKH----CLDFNAEEHPIAFQVGDNEPKKLAKSA 64
F R + R+ + +EM ++A++ + C + Q+ EP +A++A
Sbjct: 26 FRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSIMQDDATSACVQLAGCEPNVIAEAA 85
Query: 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
K+ + G I+LN GCP+ +V NG+ G+ LM L + +A +V+I +TVK R+G
Sbjct: 86 KMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGLAAKIFEAAVKAVKIPVTVKMRMG 145
Query: 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARN-----------AFLKKLNPKQNRKIPILK 173
DD +G + VH R F+K N K+ KIP++
Sbjct: 146 WDD--QTKNAPTLAKIAERSGIQMVTVHGRTRCQFYSGNADWEFIK--NVKEAVKIPVIA 201
Query: 174 YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--LNY 231
+ N K LE + DGVM+GR AY P+L+S D L
Sbjct: 202 NGDITNFAKAKEALE----------------KSSADGVMVGRGAYGKPWLISQIDHYLKT 245
Query: 232 YSNLPQYKIPTRIDII 247
P I +++DI+
Sbjct: 246 GEEKPAPSIESQLDIV 261
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 132/290 (45%), Gaps = 23/290 (7%)
Query: 10 MFHRQITRYS---WLYTEMFTTQAI--LGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSA 64
+F R + RY+ LYTEM + I L ++ + E+PI+ Q+ D P +A++A
Sbjct: 56 VFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVMEIDPRENPISIQLFDCRPDFMAEAA 115
Query: 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
+ G +++N GCP N++ G+ L+ +P + +K + +V++ +TVK R+G
Sbjct: 116 QKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEAIVKTVVAAVDVPVTVKTRLG 175
Query: 125 IDD--INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK 182
DD IN + +F + AG + +H R + R ++ ++ +K+
Sbjct: 176 WDDGEIN----IVEFAQRLQDAGAQMLTLHGRT----RAQGYNGRA----RWQWIAKVKQ 223
Query: 183 DFPELEIIINGGI-KTKKEID-LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
+ +I NG I + I L DGVM R + PFL+ + +++ + K
Sbjct: 224 AL-TIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIE-HFFKTGEKRKA 281
Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
PT + + +++ + + +H+ K+ G+ ++ L
Sbjct: 282 PTVAEKLTCAQEHLQMLWEYKGQRGLFQARKHLAWYCKDFPGAAALREQL 331
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 21 LYTEMFTTQAILGNKKHCL---DFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77
+ +EM +QA++ + L + E+ P+A Q+ EP +A++AK+ + G I++
Sbjct: 39 VVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDI 98
Query: 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD--INSYDFVR 135
N GCP +V NG G+ LM L + ++A +V I +T+K R G DD +N+ R
Sbjct: 99 NFGCPVKKVVNGHAGSSLMRDEALAARILEATAKAVTIPVTLKMRKGWDDSSLNAPRLAR 158
Query: 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 195
G + VH R ++ ++F+ ++K+ + +++NG I
Sbjct: 159 ----IAEECGIKLVTVHGRT--------REQFYNGTADWSFIRSVKEAV-SIPVVVNGDI 205
Query: 196 KTKKEIDLHL--NYIDGVMLGREAYKNPFL 223
+ +D L + DGVM+GR AY P+
Sbjct: 206 TSFDAVDRALAESGADGVMIGRGAYGRPWF 235
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 23/250 (9%)
Query: 11 FHRQITRYS--WLYTEMFTTQAILGNKKHCLDFNA----EEHPIAFQVGDNEPKKLAKSA 64
F R + R+ + +EM ++A++ + L +A + Q+ EP +A++A
Sbjct: 26 FRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMRDDATSACVQLAGCEPNVIAEAA 85
Query: 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
K+ + G I+LN GCP+ +V G+ G+ LM L + +A ++V++ +TVK R+G
Sbjct: 86 KMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMKDEQLAAKIFEATVEAVKLPVTVKMRMG 145
Query: 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF 184
DD N+ + S+G + VH R + ++F+ ++K+
Sbjct: 146 WDD-NTKN-APTLAKIAESSGVQMITVHGRT--------RCQFYSGNADWDFIRSVKESV 195
Query: 185 PELEIIINGGIK--TKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPT 242
++ +I NG I K + L + DG+M+GR AY P+L+S D +Y + P+
Sbjct: 196 -KIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLISQID-HYLKTGEEKSAPS 253
Query: 243 ---RIDIINR 249
++DI+
Sbjct: 254 IAEQLDIVTE 263
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 21/249 (8%)
Query: 11 FHRQITRYS--WLYTEMFTTQAILGNKKH----CLDFNAEEHPIAFQVGDNEPKKLAKSA 64
F + + R+ + +EM ++A++ + C + + Q+ EP +A++A
Sbjct: 26 FRKLVKRFGAGLVVSEMIASRAMVVKSRQSMQKCAIVHDDPTSACVQLAGCEPNVIAEAA 85
Query: 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
K+ + G I+LN GCP+ +V G+ G+ LM L + +A +V+I ITVK R+G
Sbjct: 86 KMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATVKAVKIPITVKMRMG 145
Query: 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF 184
DD N+ + D S+G + VH R + ++F+ ++K+
Sbjct: 146 WDD-NTKN-APDLAKIAESSGVQMVTVHGRT--------RCQFYSGNADWDFIRSVKEAV 195
Query: 185 PELEIIINGGIK--TKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD--LNYYSNLPQYKI 240
++ +I NG I K + L + DG+M+GR AY P+L+S L P I
Sbjct: 196 -KIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLVSQIAHYLKTGEEKPAPSI 254
Query: 241 PTRIDIINR 249
++DI+
Sbjct: 255 AEQLDIVTE 263
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 21/249 (8%)
Query: 11 FHRQITRYS--WLYTEMFTTQAILGNKKH----CLDFNAEEHPIAFQVGDNEPKKLAKSA 64
F + + R+ + +EM ++A++ + C + + Q+ EP +A++A
Sbjct: 26 FRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQLAGCEPDVIAEAA 85
Query: 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
K+ + G I+LN GCP+ +V G+ G+ LM L + +A +V+I +TVK RIG
Sbjct: 86 KMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATVKAVKIPVTVKMRIG 145
Query: 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF 184
DD N+ + +++G + VH R + + N ++F+ +K+
Sbjct: 146 WDD-NTRN-APTLAKIAANSGVQMVTVHGRTR-CQFYSGNAN-------WDFIRTVKEAV 195
Query: 185 PELEIIINGGIK--TKKEIDLHLNYIDGVMLGREAYKNPFLMSN--FDLNYYSNLPQYKI 240
++ +I NG I K + L + DG+M+GR Y P+L+S + L P I
Sbjct: 196 -KIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGKPWLISQIAYYLKTGKEKPAPSI 254
Query: 241 PTRIDIINR 249
++DII +
Sbjct: 255 AEQLDIITK 263
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 2 NLTDRHCRMFHRQITRYS--WLYTEMFTTQAILGNKKH----CLDFNAEEHPIAFQVGDN 55
N+TD F + + R+ + +EM ++A++ + C + + Q+
Sbjct: 20 NITDLE---FRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQLAGC 76
Query: 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 115
EP +A +AK+ + G I+LN GCP+ +V G+ G+ LM L + +A +V+I
Sbjct: 77 EPDVIADAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDERLATKIFEATVKAVKI 136
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVK R+G DD N+ + +S+G + VH R + + N ++
Sbjct: 137 PVTVKMRMGWDD-NTKN-APTLAVIAASSGVQMVTVHGRTR-CQFYSGNAN-------WD 186
Query: 176 FVYNLKKDFPELEIIINGGIK--TKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY- 232
F+ + K+ ++ +I NG I K + L + DG+M+GR Y P+L+S + YY
Sbjct: 187 FI-RVVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVYGKPWLISQ--IAYYL 243
Query: 233 ---SNLPQYKIPTRIDII 247
P I ++DII
Sbjct: 244 KTGKEKPAPSIAEQLDII 261
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 135/324 (41%), Gaps = 29/324 (8%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK--HCLDFNAEEHPIAFQVGDNEPKK 59
+TD+ R+ +++ + + G +K H +D E PI+ Q+ EP++
Sbjct: 19 GVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHAGEPDPISVQIAGTEPQQ 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+ G I++N GCP+ +V N + G+ LM LV+ + A+ +V++ +T+
Sbjct: 79 LAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEDLVARILSAVVRAVDVPVTL 138
Query: 120 KHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
K R G D N R G VH R + +Y +
Sbjct: 139 KIRTGWDCDHRNGPTIAR----IAQDCGIAALAVHGRT--------RDQHYTGTAEYATI 186
Query: 178 YNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNL 235
+K ++ +I NG I + ++ L +D VM+GR A P++ ++ +Y
Sbjct: 187 AQIKAAL-QIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWIFG--EVAHYLAT 243
Query: 236 PQYKIPTRIDIINRMILYIRQQLNN--NKIKNINSITRHMLGLMKNIKGSNKFKQILSKP 293
P + + +L + L+ + + + +H+ K+ S F+ ++++
Sbjct: 244 GALLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKHLGWYAKDHPQSADFRAVVNRA 303
Query: 294 N------LLTIDNFQFFLNTLNIP 311
LT D F + + P
Sbjct: 304 ETPEAQLALTRDYFDALIAGVPPP 327
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 19/247 (7%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHC---LDFNAEEHPIAFQVGDNEPK 58
+TDR R R++ + +EM T+ L N + L + E+ P + Q+ +P
Sbjct: 22 GVTDRPFRQLCRRLG-AGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEPRSVQIAGGDPA 80
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
LA++A+ + G I++N GCP+ +V N G+ L+ LV++ + A+ +V++ +T
Sbjct: 81 MLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVAEILDAVVRAVDVPVT 140
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
+K R G D N AG + VH R + + +Y +
Sbjct: 141 LKIRTGWDRDNRNGVT--VAKLAEQAGIQALAVHGRT--------RADLYTGEAEYETIA 190
Query: 179 NLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD--LNYYSN 234
+K+ + + NG I + ++ + +D +++GR A P++ D L +
Sbjct: 191 AIKQAV-SIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIFREIDHYLRTGEH 249
Query: 235 LPQYKIP 241
LP +P
Sbjct: 250 LPAAPLP 256
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 20/192 (10%)
Query: 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 101
N + P+ Q N+ + L+ +A+I+ + + I++NCGCP +GA L+ KP L
Sbjct: 78 NQGDCPLIVQFAANDARLLSDAARIVCPYA-NGIDINCGCPQRWAMAEGYGACLINKPEL 136
Query: 102 VSDCIKAMRDSVEI---DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158
V D +K +R+ VE +++K RI D + D + T G VH R A
Sbjct: 137 VQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEAT----GVSWITVHGRTA-E 191
Query: 159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGRE 216
++ P I I+K N + +I NG I++ KE + + DGVM+ R
Sbjct: 192 ERHQPVHYDSIKIIKENM---------SIPVIANGDIRSLKEAENVWRITGTDGVMVARG 242
Query: 217 AYKNPFLMSNFD 228
NP + + ++
Sbjct: 243 LLANPAMFAGYE 254
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 127/299 (42%), Gaps = 23/299 (7%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK--HCLDFNAEEHPIAFQVGDNEPKK 59
+TD+ R+ +++ + + G +K H +D E PI+ Q+ EP++
Sbjct: 19 GVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHAGEPDPISVQIAGTEPQQ 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+ G I++N GCP+ +V N + G+ LM LV+ + A+ +V + +T+
Sbjct: 79 LAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEELVARILTAVVQAVNVPVTL 138
Query: 120 KHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
K R G D N R G VH R + +Y +
Sbjct: 139 KIRTGWDCDHRNGPTIAR----IAQDCGIAALAVHGRT--------RDQHYTGSAEYATI 186
Query: 178 YNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNL 235
+K ++ ++ NG I + ++ L D VM+GR A P++ ++ ++
Sbjct: 187 AQIKAAL-QIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWIFG--EVAHFLAT 243
Query: 236 PQYKIPTRIDIINRMILYIRQQLNN--NKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+ P + + +L + L+ + + + +H+ K+ S F+ ++++
Sbjct: 244 GEVLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKHLGWYAKDHPQSADFRAVVNR 302
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 108
A Q+ ++P ++A++A I ++G I++N GCP+ +V G+ L+ P LV ++
Sbjct: 68 AVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEKILRE 127
Query: 109 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARN-AFLKKLNPKQN 166
+ +V + +T+K R G D N + V+ +G ++ G + VH R A L +
Sbjct: 128 VVSAVNVPVTLKIRTGWDKSNR-NCVQ--IGKIAEQCGIQALTVHGRTRACLFEGEA--- 181
Query: 167 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLM 224
+Y+ + +K+ + +I NG I + ++ LNY D +M+GR A NP+L
Sbjct: 182 ------EYDNIKAVKQAIA-IPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLF 234
Query: 225 SN----FDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNI 280
+ N S +P K + I R I + Q K I +H+ ++ I
Sbjct: 235 QAVENLIEHNSISQMPSLK--EKCGQILRHIQELHQFYGEQKGYRIAR--KHVAWYLQGI 290
Query: 281 KGSNKFKQILS-----KPNLLTIDNF 301
+ + FKQ + K L+ +++F
Sbjct: 291 QPDSVFKQTFNAISDPKEQLIVLEDF 316
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 28/235 (11%)
Query: 6 RHCRMFHRQITRY---SWLYTEMFTTQAILGNKKHC----LDFNAEEHPIAFQVGDNEPK 58
R+ ++ RQ+ R +T M + + ++K C L + P+ Q ++P
Sbjct: 3 RYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEK-CRSSELSVCEGDSPLIVQFATDDPF 61
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EI 115
L+++A+++ K ++LNCGCP + V++ FG+ L++KP L++D ++ R + +
Sbjct: 62 VLSEAAEMVYKCSTG-VDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+++K RI D + D R +AG VH R P Q R PI
Sbjct: 121 SVSLKIRINHDIEKTVDLCR----KAEAAGVTHLTVHGR-------TPSQ-RAEPIDIQA 168
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDL--HLNYIDGVMLGREAYKNPFLMSNFD 228
+ KD + II NGGI T++E +DG+M NP L + +
Sbjct: 169 L--RIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHE 221
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 17/231 (7%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHC---LDFNAEEHPIAFQVGDNEPK 58
+TD+ R Q+ ++EM +T + + + L +AE A Q+ +EP
Sbjct: 19 GITDQPFRRLCSQLG-AGLTFSEMMSTNPDVWHTEKSRLRLAHHAEIGINAVQIAGSEPT 77
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
++A++AKI +G I++N GCP+ +V G+ L+ +P LV+ + A+ ++V++ +T
Sbjct: 78 EIAEAAKINVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARILDAVVNAVDVPVT 137
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
+K R G D + +F++ AG +H R + I +K
Sbjct: 138 LKIRTGWDKTHK-NFLQ-IAKIAEKAGISALTIHGRTRDCLFNGQAEYESIKAVKQAVF- 194
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNF 227
+ II NG I + ++ L+Y D VM+GR ++ P+L
Sbjct: 195 --------MPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPWLFQEL 237
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 20/192 (10%)
Query: 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 101
N + P+ Q N+ + L+ +A ++ + + I++NCGCP +GA L+ KP L
Sbjct: 78 NQGDCPLIVQFAANDARLLSDAALLVCPYA-NGIDINCGCPQRWAMADGYGACLINKPEL 136
Query: 102 VSDCIKAMRDSVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158
V D ++ +R+ VE +++K RI D + D R T G VH R
Sbjct: 137 VHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEAT----GVSWITVHGRTV-- 190
Query: 159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGRE 216
+ R P+ Y+ + +K++ + I+ NG I++ KE + + DGVM+ R
Sbjct: 191 ------EERHQPV-HYDAIKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARG 242
Query: 217 AYKNPFLMSNFD 228
NP + + ++
Sbjct: 243 LLANPAMFAGYE 254
>sp|P67717|DUS_STAAN Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain N315) GN=dus PE=1 SV=1
Length = 328
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 139/297 (46%), Gaps = 25/297 (8%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAI-----LGNKKHCLDFNAEEHPIAFQVGDNE 56
++TD R + R +TE T++ + + + L F+ +EHP+ + ++
Sbjct: 21 DVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHPMVAHIWGDK 80
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116
P++ +++ + K G+ I+LN GCP V G+ L+ +P + ++ I+A + + +
Sbjct: 81 PEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATK-AGGLP 139
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
++VK R+G +I+ + +D++ V +H R +K K + +++
Sbjct: 140 VSVKTRLGYYEIDEW---KDWLKHVFEQDIANLSIHLRT---RKEMSKVDAHWELIEA-- 191
Query: 177 VYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS 233
+ NL+ + P + ING I +K ++L Y IDGVM+GR + NPF + S
Sbjct: 192 IKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTS 251
Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
+ + + N+ ++I+ S+ R ++ I+G+++ + L
Sbjct: 252 KELLDLLRLHLSLFNK--------YEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL 300
>sp|P67716|DUS_STAAM Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=dus PE=1 SV=1
Length = 328
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 139/297 (46%), Gaps = 25/297 (8%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAI-----LGNKKHCLDFNAEEHPIAFQVGDNE 56
++TD R + R +TE T++ + + + L F+ +EHP+ + ++
Sbjct: 21 DVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEHPMVAHIWGDK 80
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116
P++ +++ + K G+ I+LN GCP V G+ L+ +P + ++ I+A + + +
Sbjct: 81 PEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATK-AGGLP 139
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
++VK R+G +I+ + +D++ V +H R +K K + +++
Sbjct: 140 VSVKTRLGYYEIDEW---KDWLKHVFEQDIANLSIHLRT---RKEMSKVDAHWELIEA-- 191
Query: 177 VYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS 233
+ NL+ + P + ING I +K ++L Y IDGVM+GR + NPF + S
Sbjct: 192 IKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTS 251
Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
+ + + N+ ++I+ S+ R ++ I+G+++ + L
Sbjct: 252 KELLDLLRLHLSLFNK--------YEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL 300
>sp|O53835|DUS_MYCTU Probable tRNA-dihydrouridine synthase OS=Mycobacterium tuberculosis
GN=dus PE=3 SV=1
Length = 389
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 128/316 (40%), Gaps = 29/316 (9%)
Query: 8 CRMFHR-QITRYSWLYT-EMFTTQAILGNKK---HCLDFNAEEHPIAFQVGDNEPKKLAK 62
CR + ++ S LY EM T +A++ H F+A+E P + Q+ +P
Sbjct: 41 CRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYA 100
Query: 63 SAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM---RDSVEIDIT 118
+A++I G D I++N GCP +V GA L K L + A + +I +T
Sbjct: 101 AARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVT 160
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VK RIGIDD + D + G +HAR A R + +
Sbjct: 161 VKFRIGIDDAHHTHL--DAGRIAEAEGAAAVALHARTA--------AQRYSGTADWEQIA 210
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYSNLP 236
LK+ + ++ NG I + ++ DGV++GR P+L + + + P
Sbjct: 211 RLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGS-P 269
Query: 237 QYKIPTR---IDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKP 293
PT DII R + + K + I +H+ + + ++ L+
Sbjct: 270 APTPPTLGEVADIIRRHGTLLAAHFGED--KGMRDIRKHIAWYLHGFPAGSALRRALAM- 326
Query: 294 NLLTIDNFQFFLNTLN 309
+ T D L+ L+
Sbjct: 327 -VKTFDELDCLLDRLD 341
>sp|Q8Z5B2|DUSC_SALTI tRNA-dihydrouridine synthase C OS=Salmonella typhi GN=dusC PE=3
SV=1
Length = 312
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 26/250 (10%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ P+ LA++A G ++LNCGCPS V GA L+T P L+
Sbjct: 64 PVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVNGSGGGATLLTDPELIYQGA 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
KAMR +V + +TVK R+G D S D + V AG +VH R
Sbjct: 124 KAMRAAVPSHLPVTVKVRLGWD---SGDRKFEIADAVQQAGASELVVHGRTK-------A 173
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLNYIDGVMLGREAYKNPF 222
Q + + + + +++ + +I NG I + + + D VM+GR A P
Sbjct: 174 QGYRAEHIDWQAIGEIRQRL-TIPVIANGEIWDWQSAQACMATSGCDAVMIGRGALNIP- 231
Query: 223 LMSNFDLNYYSNLPQYKIPTRIDIINRMILYIR-QQLNNNKIKNINSITRHMLGLMKN-- 279
N N P+ P + ++ + Y R ++ + + ++ I + LG ++
Sbjct: 232 ---NLSRVVKYNEPRMPWPEVVTLLQK---YTRLEKQGDTGLYHVARI-KQWLGYLRKEY 284
Query: 280 IKGSNKFKQI 289
I+ + F+ I
Sbjct: 285 IEATELFQSI 294
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 27/245 (11%)
Query: 21 LYTEMFTTQAILGNKKHCLDF--NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN 78
+ TEM ++ ++ + A P Q+ E +A++AKI G D I++N
Sbjct: 32 VVTEMVASRELVNDTAESWSRLKAAGFRPHMVQLAGREAHWMAEAAKIAADHGADIIDIN 91
Query: 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD--INSYDFVRD 136
GCP+ +V G+ G+ LM P I+A +V+I +T+K R+G D+ IN+ D R
Sbjct: 92 MGCPAKKVIGGYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIAR- 150
Query: 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196
++G + +H R ++ + R ++ + + ++ + +I NG ++
Sbjct: 151 ---RAEASGIQLVTIHGRT----RMQFYEGRA----DWDAIRAV-REVISVPLIANGDVE 198
Query: 197 TKKEID--LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYI 254
T + L + D VM+GR P+ + L P R DI + + +
Sbjct: 199 TAHDAQEILRRSGADAVMIGRGCQGRPW--------HAGVLAGAAEPRREDIADIAVEHY 250
Query: 255 RQQLN 259
R L+
Sbjct: 251 RMMLD 255
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 23 TEMFTTQAILGNKKHCLDF---NAEEHPIAFQVGDNEPKKLAKSAKII-QKWGYDEINLN 78
EM + +AIL N + + E P++ Q+ + + L ++AK + Q D I++N
Sbjct: 40 AEMVSDKAILYNNARTMGMLYIDEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDIN 99
Query: 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFV 138
GCP ++ GA + P + + + A+ D+V +TVK R+G D+ + F
Sbjct: 100 MGCPVPKITKCDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDE--DHIFAVKNA 157
Query: 139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE---LEIIINGGI 195
V AG + +H R ++ + + +++ K+ + + +I NG +
Sbjct: 158 QAVERAGGKAVALHGRT------------RVQMYEGTANWDIIKEVKQSVSIPVIGNGDV 205
Query: 196 KTKKEIDLHLNY--IDGVMLGREAYKNPFLM 224
KT ++ L+ +DGVM+GR A NP+++
Sbjct: 206 KTPQDAKRMLDETGVDGVMIGRAALGNPWMI 236
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 18/220 (8%)
Query: 11 FHRQITRYS--WLYTEMFTTQAILGNKKHC---LDFNAEEHPIAFQVGDNEPKKLAKSAK 65
F R T Y ++EM +T + + + L + E A Q+ +P ++AK+A+
Sbjct: 25 FRRICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHHQEAGINAVQIAGCDPDEMAKAAQ 84
Query: 66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125
I ++G + I++N GCP+ +V G+ L+ P LV + + SV + +T+K R G
Sbjct: 85 INVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILNKVVKSVTVPVTLKIRTGW 144
Query: 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP 185
D N + G + +H R + I +K
Sbjct: 145 DKDNRNCL--EIAKIAEQCGIQALTIHGRTRSCMFEGEAEYDNIKAVKEQL--------- 193
Query: 186 ELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFL 223
+ II NG I + ++ L+Y D +M+GR + NP+L
Sbjct: 194 SIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPWL 233
>sp|Q8NYV4|DUS_STAAW Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MW2) GN=dus PE=3 SV=1
Length = 328
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAI-----LGNKKHCLDFNAEEHPIAFQVGDNE 56
++TD R + R +TE T++ + + + L F+ +E P+ + ++
Sbjct: 21 DVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVAHIWGDK 80
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116
P++ +++ + K G+ I+LN GCP V G+ L+ +P + ++ I+A + + +
Sbjct: 81 PEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATK-AGGLP 139
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
++VK R+G +I+ + +D++ V +H R +K K + +++
Sbjct: 140 VSVKTRLGYYEIDEW---KDWLKHVFEQDIANLSIHLRT---RKEMSKVDAHWELIEA-- 191
Query: 177 VYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS 233
+ NL+ + P + ING I +K ++L Y IDGVM+GR + NPF + S
Sbjct: 192 IKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTS 251
Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
+ + + N+ ++I+ S+ R ++ I+G+++ + L
Sbjct: 252 KELLDLLRLHLSLFNK--------YEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL 300
>sp|Q6GD38|DUS_STAAS Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain MSSA476) GN=dus PE=3 SV=1
Length = 328
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAI-----LGNKKHCLDFNAEEHPIAFQVGDNE 56
++TD R + R +TE T++ + + + L F+ +E P+ + ++
Sbjct: 21 DVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVAHIWGDK 80
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116
P++ +++ + K G+ I+LN GCP V G+ L+ +P + ++ I+A + + +
Sbjct: 81 PEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATK-AGGLP 139
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
++VK R+G +I+ + +D++ V +H R +K K + +++
Sbjct: 140 VSVKTRLGYYEIDEW---KDWLKHVFEQDIANLSIHLRT---RKEMSKVDAHWELIEA-- 191
Query: 177 VYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS 233
+ NL+ + P + ING I +K ++L Y IDGVM+GR + NPF + S
Sbjct: 192 IKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTS 251
Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
+ + + N+ ++I+ S+ R ++ I+G+++ + L
Sbjct: 252 KELLDLLRLHLSLFNK--------YEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL 300
>sp|Q5HJT5|DUS_STAAC Probable tRNA-dihydrouridine synthase OS=Staphylococcus aureus
(strain COL) GN=dus PE=3 SV=2
Length = 328
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAI-----LGNKKHCLDFNAEEHPIAFQVGDNE 56
++TD R + R +TE T++ + + + L F+ +E P+ + ++
Sbjct: 21 DVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVAHIWGDK 80
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116
P++ +++ + K G+ I+LN GCP V G+ L+ +P + ++ I+A + + +
Sbjct: 81 PEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATK-AGGLP 139
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
++VK R+G +I+ + +D++ V +H R +K K + +++
Sbjct: 140 VSVKTRLGYYEIDEW---KDWLKHVFEQDIANLSIHLRT---RKEMSKVDAHWELIEA-- 191
Query: 177 VYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS 233
+ NL+ + P + ING I +K ++L Y IDGVM+GR + NPF + S
Sbjct: 192 IKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTS 251
Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQIL 290
+ + + N+ ++I+ S+ R ++ I+G+++ + L
Sbjct: 252 KELLDLLRLHLSLFNK--------YEKDEIRQFKSLRRFFKIYVRGIRGASELRHQL 300
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 120/276 (43%), Gaps = 33/276 (11%)
Query: 10 MFHRQITRYSWLY-TEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ 68
MFH ++ S Y ++F+T+ I EE P+ Q N+P+ + K+AKI
Sbjct: 49 MFHSRLFGESEDYRNKVFSTRTI-----------PEERPLIIQFCGNDPEIMLKAAKIAA 97
Query: 69 KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 128
+ D +++N GCP + G +G+ L L+ I + + I +T K RI D
Sbjct: 98 PY-CDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQ 156
Query: 129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-EL 187
+ D+ + + AG VH R L ++ I + + L+K+ P E
Sbjct: 157 KTLDYAK----MILKAGASILAVHGR------LREQKGHFTGIADWEQIQMLRKNLPSET 206
Query: 188 EIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRID 245
+ NG I ++ID + Y +DGV+ + NP + + P + RID
Sbjct: 207 VLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIF------LPPSSPLMTLYPRID 260
Query: 246 IINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNI 280
+ L I ++ + ++++I H+ LM+ +
Sbjct: 261 DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPL 296
>sp|O68273|DUSC_CUPNH tRNA-dihydrouridine synthase C OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=dusC PE=3 SV=2
Length = 322
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ ++P+ LA++A I+LN GCP+ V GA+L+T P L++ +
Sbjct: 65 PMVIQLLGSDPEWLARNAAYAATLSPHGIDLNFGCPAKVVNRHGGGAMLLTNPELLNRIV 124
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
++R +V I +T K R+G+ D + D ++ G + +VHAR +
Sbjct: 125 ASVRAAVPAHIAVTAKMRLGVSDAS---LAIDCATALAEGGAASLVVHART--------R 173
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG---VMLGREAYKNP 221
+ P ++++ + ++ +I NG + T + + + G VM+GR A +P
Sbjct: 174 DHGYRPPAHWDWIARIAAAV-DVPVIANGDVWTVADWE-RCRAVSGCADVMIGRGAVSDP 231
Query: 222 FL 223
FL
Sbjct: 232 FL 233
>sp|Q8ZNM4|DUSC_SALTY tRNA-dihydrouridine synthase C OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusC PE=3 SV=1
Length = 312
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 26/250 (10%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ P+ LA++A G ++LNCGCPS V GA L+ P L+
Sbjct: 64 PVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVNGSGGGATLLKDPELIYQGA 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
KAMR +V + +TVK R+G D S D + V AG +VH R
Sbjct: 124 KAMRAAVPSHLPVTVKVRLGWD---SGDRKFEIADAVQQAGASELVVHGRTK-------A 173
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLNYIDGVMLGREAYKNPF 222
Q + + + + +++ + +I NG I + + + D VM+GR A P
Sbjct: 174 QGYRAEHIDWQAIGEIRQRL-TIPVIANGEILDWQSAQACMATSGCDAVMIGRGALNIP- 231
Query: 223 LMSNFDLNYYSNLPQYKIPTRIDIINRMILYIR-QQLNNNKIKNINSITRHMLGLMKN-- 279
N N P+ P + ++ + Y R ++ + + ++ I + LG ++
Sbjct: 232 ---NLSRVVKYNEPRMPWPEVVTLLQK---YTRLEKQGDTGLYHVARI-KQWLGYLRKEY 284
Query: 280 IKGSNKFKQI 289
I+ + F+ I
Sbjct: 285 IEATELFQSI 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,793,665
Number of Sequences: 539616
Number of extensions: 4822028
Number of successful extensions: 11794
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 11583
Number of HSP's gapped (non-prelim): 202
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)