Query psy2386
Match_columns 311
No_of_seqs 273 out of 2417
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:39:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00742 yjbN tRNA dihydrouri 100.0 1E-74 2.3E-79 539.8 33.9 305 1-309 9-314 (318)
2 PRK11815 tRNA-dihydrouridine s 100.0 2.3E-70 5.1E-75 515.0 33.9 305 1-309 19-324 (333)
3 COG0042 tRNA-dihydrouridine sy 100.0 3.2E-70 7E-75 510.6 30.9 293 1-308 19-318 (323)
4 PRK10550 tRNA-dihydrouridine s 100.0 8.5E-68 1.8E-72 492.5 30.8 287 1-306 9-309 (312)
5 PRK10415 tRNA-dihydrouridine s 100.0 2.4E-67 5.3E-72 492.2 31.2 294 1-308 18-317 (321)
6 PF01207 Dus: Dihydrouridine s 100.0 1.1E-68 2.5E-73 499.0 18.1 293 1-307 6-304 (309)
7 TIGR00737 nifR3_yhdG putative 100.0 1.8E-61 3.8E-66 453.3 30.9 295 1-309 16-316 (319)
8 KOG2335|consensus 100.0 6.7E-60 1.4E-64 432.9 23.5 283 1-309 27-316 (358)
9 KOG2333|consensus 100.0 7.1E-49 1.5E-53 368.0 21.1 260 3-277 275-544 (614)
10 cd02801 DUS_like_FMN Dihydrour 100.0 3.4E-48 7.3E-53 347.1 23.4 216 1-229 8-228 (231)
11 cd02911 arch_FMN Archeal FMN-b 100.0 7.1E-42 1.5E-46 306.5 17.9 202 2-228 9-232 (233)
12 TIGR00736 nifR3_rel_arch TIM-b 100.0 1E-37 2.3E-42 277.5 18.1 161 44-221 66-227 (231)
13 TIGR01037 pyrD_sub1_fam dihydr 100.0 3.4E-36 7.3E-41 280.0 19.5 214 2-231 22-280 (300)
14 cd02940 DHPD_FMN Dihydropyrimi 100.0 1.5E-35 3.3E-40 275.4 16.4 200 19-230 71-298 (299)
15 cd04740 DHOD_1B_like Dihydroor 100.0 1.4E-32 3.1E-37 255.1 21.9 212 4-230 22-276 (296)
16 PRK08318 dihydropyrimidine deh 100.0 7E-33 1.5E-37 268.9 16.5 201 19-231 71-300 (420)
17 KOG2334|consensus 100.0 3E-31 6.5E-36 246.5 20.7 236 2-262 20-280 (477)
18 PRK07259 dihydroorotate dehydr 100.0 1.5E-30 3.3E-35 242.1 19.5 174 44-231 90-280 (301)
19 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 5.5E-30 1.2E-34 237.0 17.1 174 44-229 97-288 (289)
20 cd04741 DHOD_1A_like Dihydroor 100.0 3.8E-29 8.2E-34 231.9 17.6 175 44-231 90-290 (294)
21 cd04734 OYE_like_3_FMN Old yel 100.0 1.9E-28 4.1E-33 231.7 17.6 225 4-230 32-331 (343)
22 cd04738 DHOD_2_like Dihydrooro 100.0 1E-27 2.2E-32 225.5 15.8 173 44-230 127-326 (327)
23 PRK13523 NADPH dehydrogenase N 100.0 2.3E-27 5E-32 223.5 16.3 170 58-233 142-324 (337)
24 PRK05286 dihydroorotate dehydr 99.9 2E-27 4.2E-32 224.9 14.3 174 44-231 136-336 (344)
25 cd04739 DHOD_like Dihydroorota 99.9 2.6E-26 5.6E-31 215.7 19.1 172 45-231 99-284 (325)
26 cd04733 OYE_like_2_FMN Old yel 99.9 2.6E-26 5.7E-31 216.9 16.5 167 58-229 149-337 (338)
27 cd02931 ER_like_FMN Enoate red 99.9 8.8E-26 1.9E-30 216.3 18.6 171 58-229 150-350 (382)
28 cd02933 OYE_like_FMN Old yello 99.9 2.7E-25 5.8E-30 209.7 18.0 160 58-229 152-329 (338)
29 cd04735 OYE_like_4_FMN Old yel 99.9 1.1E-25 2.4E-30 213.8 15.4 166 58-229 144-328 (353)
30 cd02803 OYE_like_FMN_family Ol 99.9 4.7E-25 1E-29 207.4 18.1 171 58-229 141-326 (327)
31 PRK07565 dihydroorotate dehydr 99.9 5.2E-25 1.1E-29 207.8 18.2 171 45-230 101-285 (334)
32 cd02932 OYE_YqiM_FMN Old yello 99.9 8E-25 1.7E-29 206.7 17.7 165 58-228 154-334 (336)
33 cd02929 TMADH_HD_FMN Trimethyl 99.9 6.7E-25 1.4E-29 209.5 17.1 169 58-230 150-335 (370)
34 cd04747 OYE_like_5_FMN Old yel 99.9 1.2E-24 2.6E-29 206.3 16.9 163 58-230 144-344 (361)
35 cd02930 DCR_FMN 2,4-dienoyl-Co 99.9 1E-24 2.2E-29 207.3 16.3 170 58-230 137-322 (353)
36 PLN02495 oxidoreductase, actin 99.9 8.4E-24 1.8E-28 201.2 17.0 178 44-231 112-317 (385)
37 PRK08255 salicylyl-CoA 5-hydro 99.9 2.9E-23 6.3E-28 215.1 18.6 166 58-229 551-733 (765)
38 COG0167 PyrD Dihydroorotate de 99.9 1.8E-22 4E-27 186.0 15.7 173 44-230 95-287 (310)
39 PRK02506 dihydroorotate dehydr 99.9 1.4E-22 3E-27 189.3 14.8 175 44-230 91-287 (310)
40 cd02809 alpha_hydroxyacid_oxid 99.9 2.6E-21 5.6E-26 180.0 20.1 204 5-261 83-290 (299)
41 TIGR01036 pyrD_sub2 dihydrooro 99.9 1.4E-21 3.1E-26 184.1 13.7 175 42-230 131-334 (335)
42 COG1902 NemA NADH:flavin oxido 99.9 1.6E-20 3.5E-25 177.8 17.8 225 3-231 37-335 (363)
43 PF01180 DHO_dh: Dihydroorotat 99.8 8.8E-21 1.9E-25 176.1 13.8 174 45-231 96-291 (295)
44 PF00724 Oxidored_FMN: NADH:fl 99.8 2.3E-20 5.1E-25 176.6 15.9 172 58-230 149-337 (341)
45 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 2E-20 4.3E-25 177.3 14.0 163 2-219 54-221 (369)
46 PRK10605 N-ethylmaleimide redu 99.8 8.5E-20 1.8E-24 173.8 17.9 160 58-229 159-336 (362)
47 PLN02826 dihydroorotate dehydr 99.8 1.8E-19 4E-24 173.1 18.2 171 46-230 187-387 (409)
48 PLN02411 12-oxophytodienoate r 99.8 5E-19 1.1E-23 170.1 17.7 168 58-229 165-357 (391)
49 PRK14024 phosphoribosyl isomer 99.8 8.9E-18 1.9E-22 151.7 13.0 127 90-229 102-237 (241)
50 PRK04180 pyridoxal biosynthesi 99.7 8.4E-18 1.8E-22 152.0 11.7 145 61-221 27-241 (293)
51 PRK01033 imidazole glycerol ph 99.7 2.1E-15 4.5E-20 137.5 15.8 177 14-220 41-232 (258)
52 PRK05437 isopentenyl pyrophosp 99.6 1E-14 2.2E-19 138.5 18.5 191 11-219 85-295 (352)
53 TIGR02151 IPP_isom_2 isopenten 99.6 1.1E-14 2.4E-19 137.3 16.6 195 9-219 76-288 (333)
54 PRK08649 inosine 5-monophospha 99.6 8.7E-15 1.9E-19 139.2 13.9 160 2-217 57-218 (368)
55 cd04732 HisA HisA. Phosphorib 99.6 3.3E-14 7.2E-19 127.4 15.0 151 48-226 74-231 (234)
56 cd04731 HisF The cyclase subun 99.6 6.4E-14 1.4E-18 126.6 16.5 190 12-230 36-239 (243)
57 PRK13585 1-(5-phosphoribosyl)- 99.6 9.7E-14 2.1E-18 125.1 16.8 154 48-230 77-238 (241)
58 cd04730 NPD_like 2-Nitropropan 99.6 1E-13 2.3E-18 124.3 16.1 180 2-222 12-193 (236)
59 TIGR03572 WbuZ glycosyl amidat 99.6 1.2E-13 2.5E-18 124.0 16.3 175 13-217 40-230 (232)
60 PRK00748 1-(5-phosphoribosyl)- 99.6 7.2E-14 1.6E-18 125.2 13.7 143 50-221 77-227 (233)
61 cd02811 IDI-2_FMN Isopentenyl- 99.5 2.3E-13 4.9E-18 128.2 16.6 163 42-219 109-289 (326)
62 PRK02083 imidazole glycerol ph 99.5 2.6E-13 5.6E-18 123.4 15.8 150 50-231 77-244 (253)
63 TIGR00007 phosphoribosylformim 99.5 3.5E-13 7.5E-18 120.7 15.8 144 48-221 73-225 (230)
64 cd04722 TIM_phosphate_binding 99.5 1.5E-12 3.2E-17 111.9 18.2 177 8-215 17-200 (200)
65 TIGR00735 hisF imidazoleglycer 99.5 2.5E-12 5.4E-17 117.1 16.6 187 14-232 41-247 (254)
66 KOG1436|consensus 99.4 3.1E-12 6.8E-17 116.1 12.8 177 41-231 174-378 (398)
67 cd04737 LOX_like_FMN L-Lactate 99.3 3.8E-11 8.2E-16 113.6 16.3 157 45-221 124-312 (351)
68 COG0106 HisA Phosphoribosylfor 99.3 6.7E-11 1.5E-15 105.0 16.1 154 45-229 73-236 (241)
69 TIGR02708 L_lactate_ox L-lacta 99.3 1.4E-10 3.1E-15 110.0 17.5 155 45-219 132-317 (367)
70 TIGR03151 enACPred_II putative 99.3 8.5E-11 1.9E-15 109.8 15.3 136 45-222 62-198 (307)
71 cd00381 IMPDH IMPDH: The catal 99.3 4.9E-10 1.1E-14 105.5 18.5 187 2-222 44-234 (325)
72 PLN02446 (5-phosphoribosyl)-5- 99.2 5.6E-10 1.2E-14 101.0 16.4 153 46-228 82-254 (262)
73 KOG1799|consensus 99.2 1.3E-11 2.7E-16 113.4 4.9 164 48-222 207-393 (471)
74 KOG0134|consensus 99.2 1.6E-10 3.5E-15 109.1 12.4 171 57-230 173-364 (400)
75 cd02922 FCB2_FMN Flavocytochro 99.2 1.4E-09 3.1E-14 102.9 18.3 161 44-222 116-308 (344)
76 cd04731 HisF The cyclase subun 99.2 1.6E-10 3.5E-15 104.4 10.0 89 133-231 28-117 (243)
77 PRK02083 imidazole glycerol ph 99.2 1.6E-10 3.5E-15 105.1 9.9 88 134-231 32-120 (253)
78 TIGR01919 hisA-trpF 1-(5-phosp 99.1 1.9E-09 4.1E-14 97.5 15.8 149 46-228 73-239 (243)
79 PRK13125 trpA tryptophan synth 99.1 1.8E-09 3.8E-14 97.8 14.7 154 55-219 15-219 (244)
80 PRK14114 1-(5-phosphoribosyl)- 99.1 2.2E-09 4.7E-14 96.9 14.9 146 50-229 76-238 (241)
81 cd04729 NanE N-acetylmannosami 99.1 1.4E-09 3.1E-14 96.7 13.5 127 64-224 85-216 (219)
82 cd04727 pdxS PdxS is a subunit 99.1 3.3E-09 7.1E-14 96.2 15.6 185 1-219 13-230 (283)
83 PRK05458 guanosine 5'-monophos 99.1 3.4E-09 7.4E-14 99.2 15.8 139 49-219 87-235 (326)
84 cd03319 L-Ala-DL-Glu_epimerase 99.1 6.1E-09 1.3E-13 97.7 16.3 150 42-228 120-272 (316)
85 PF00977 His_biosynth: Histidi 99.1 2.2E-09 4.7E-14 96.3 12.6 144 47-220 73-226 (229)
86 TIGR00343 pyridoxal 5'-phospha 99.0 1.1E-08 2.4E-13 92.9 16.5 141 63-219 22-233 (287)
87 cd04732 HisA HisA. Phosphorib 99.0 1.5E-09 3.3E-14 97.2 10.0 89 133-231 30-119 (234)
88 PRK01130 N-acetylmannosamine-6 99.0 9.1E-09 2E-13 91.6 14.7 133 64-228 81-216 (221)
89 cd00945 Aldolase_Class_I Class 99.0 2.2E-08 4.7E-13 86.7 16.7 144 45-214 48-201 (201)
90 PRK13587 1-(5-phosphoribosyl)- 99.0 1.2E-08 2.5E-13 91.9 15.2 138 49-219 78-226 (234)
91 PF04131 NanE: Putative N-acet 99.0 7.2E-09 1.6E-13 88.9 13.0 130 65-229 58-188 (192)
92 TIGR00735 hisF imidazoleglycer 99.0 2.3E-09 4.9E-14 97.7 9.8 89 133-231 31-120 (254)
93 cd00331 IGPS Indole-3-glycerol 98.9 1E-07 2.2E-12 84.7 17.1 141 45-227 72-214 (217)
94 TIGR02129 hisA_euk phosphoribo 98.9 6.1E-08 1.3E-12 87.5 14.8 143 47-220 76-238 (253)
95 TIGR01306 GMP_reduct_2 guanosi 98.9 1E-07 2.2E-12 89.1 16.4 141 47-219 84-232 (321)
96 PLN02535 glycolate oxidase 98.9 9.1E-08 2E-12 91.0 16.1 160 45-222 123-315 (364)
97 PRK13586 1-(5-phosphoribosyl)- 98.9 9.3E-08 2E-12 85.9 15.3 137 50-221 76-225 (232)
98 cd04736 MDH_FMN Mandelate dehy 98.8 1.8E-07 3.9E-12 88.8 17.1 154 45-219 115-323 (361)
99 COG0107 HisF Imidazoleglycerol 98.8 8.7E-08 1.9E-12 84.1 13.2 141 66-233 91-248 (256)
100 COG0214 SNZ1 Pyridoxine biosyn 98.8 4.4E-08 9.6E-13 85.9 10.9 143 62-220 31-243 (296)
101 cd04724 Tryptophan_synthase_al 98.8 1E-07 2.2E-12 86.2 13.8 151 56-218 12-219 (242)
102 cd04723 HisA_HisF Phosphoribos 98.7 5.2E-07 1.1E-11 81.1 16.3 150 48-226 79-230 (233)
103 cd02808 GltS_FMN Glutamate syn 98.7 2.6E-07 5.6E-12 89.3 15.1 115 97-219 196-319 (392)
104 PLN02979 glycolate oxidase 98.7 8.9E-07 1.9E-11 83.8 18.2 157 45-219 120-312 (366)
105 COG0107 HisF Imidazoleglycerol 98.7 4.3E-08 9.4E-13 86.0 8.6 89 133-231 31-120 (256)
106 KOG1606|consensus 98.7 8.3E-08 1.8E-12 83.0 10.0 152 63-230 33-254 (296)
107 PRK00748 1-(5-phosphoribosyl)- 98.7 1.2E-07 2.6E-12 85.0 10.9 89 133-231 31-120 (233)
108 TIGR00262 trpA tryptophan synt 98.7 9E-07 1.9E-11 80.7 16.3 165 47-218 11-231 (256)
109 cd03332 LMO_FMN L-Lactate 2-mo 98.7 9.7E-07 2.1E-11 84.6 17.0 157 45-219 137-342 (383)
110 TIGR01769 GGGP geranylgeranylg 98.7 1.7E-06 3.6E-11 76.2 16.9 131 58-214 11-205 (205)
111 cd04728 ThiG Thiazole synthase 98.7 1.1E-06 2.4E-11 78.5 15.5 141 48-219 65-209 (248)
112 TIGR00734 hisAF_rel hisA/hisF 98.7 3.8E-07 8.1E-12 81.4 12.4 104 91-220 107-219 (221)
113 PRK11197 lldD L-lactate dehydr 98.7 1.9E-06 4.2E-11 82.4 17.9 155 45-219 121-334 (381)
114 PF01070 FMN_dh: FMN-dependent 98.6 8.4E-07 1.8E-11 84.6 15.4 154 46-219 110-314 (356)
115 TIGR03572 WbuZ glycosyl amidat 98.6 1.8E-07 3.8E-12 84.0 10.0 89 133-231 31-120 (232)
116 PLN02617 imidazole glycerol ph 98.6 6.6E-07 1.4E-11 89.3 14.8 167 48-233 315-531 (538)
117 PRK00278 trpC indole-3-glycero 98.6 3.9E-06 8.5E-11 76.7 18.5 143 45-229 111-255 (260)
118 PRK04128 1-(5-phosphoribosyl)- 98.6 8.8E-07 1.9E-11 79.4 13.4 140 48-227 74-224 (228)
119 PRK04128 1-(5-phosphoribosyl)- 98.6 2.6E-07 5.7E-12 82.8 9.8 100 119-230 16-117 (228)
120 PRK13585 1-(5-phosphoribosyl)- 98.6 2.5E-07 5.4E-12 83.4 9.7 88 134-231 34-122 (241)
121 PRK13111 trpA tryptophan synth 98.6 3.3E-06 7.2E-11 77.0 16.7 166 47-218 13-232 (258)
122 PLN02493 probable peroxisomal 98.6 2.6E-06 5.7E-11 81.1 16.5 157 45-219 121-313 (367)
123 PRK00208 thiG thiazole synthas 98.6 2.7E-06 5.9E-11 76.1 15.6 142 48-219 65-209 (250)
124 cd03315 MLE_like Muconate lact 98.6 2.7E-06 5.8E-11 77.8 15.8 140 44-220 73-216 (265)
125 TIGR01163 rpe ribulose-phospha 98.6 2.7E-06 5.9E-11 74.7 15.1 156 49-227 2-206 (210)
126 cd03316 MR_like Mandelate race 98.5 1.7E-06 3.6E-11 82.5 14.0 144 43-217 124-273 (357)
127 PF03060 NMO: Nitronate monoox 98.5 3E-06 6.5E-11 80.1 15.5 113 72-222 114-227 (330)
128 PRK06843 inosine 5-monophospha 98.5 3.1E-06 6.8E-11 81.5 15.7 136 54-219 149-290 (404)
129 PRK07695 transcriptional regul 98.5 1.2E-05 2.6E-10 70.5 18.2 151 46-220 27-183 (201)
130 PTZ00314 inosine-5'-monophosph 98.5 4.8E-06 1E-10 82.8 16.9 137 52-220 235-379 (495)
131 COG3010 NanE Putative N-acetyl 98.5 6E-06 1.3E-10 71.5 15.2 139 55-219 30-214 (229)
132 TIGR01302 IMP_dehydrog inosine 98.5 7.4E-06 1.6E-10 80.6 16.9 141 54-226 220-368 (450)
133 PRK00507 deoxyribose-phosphate 98.5 4.6E-06 9.9E-11 74.4 14.0 137 54-216 69-210 (221)
134 PLN02591 tryptophan synthase 98.5 6.2E-06 1.3E-10 74.8 14.9 156 56-218 14-222 (250)
135 CHL00200 trpA tryptophan synth 98.4 5.7E-06 1.2E-10 75.7 14.3 166 47-219 16-236 (263)
136 PRK14024 phosphoribosyl isomer 98.4 1.5E-06 3.2E-11 78.6 10.4 88 133-231 33-121 (241)
137 TIGR00007 phosphoribosylformim 98.4 2.3E-06 5E-11 76.5 11.4 89 133-231 29-118 (230)
138 TIGR00259 thylakoid_BtpA membr 98.4 1.2E-05 2.6E-10 72.9 15.4 150 44-218 78-231 (257)
139 PRK13587 1-(5-phosphoribosyl)- 98.4 1.6E-06 3.5E-11 78.0 9.3 88 134-231 33-122 (234)
140 TIGR01949 AroFGH_arch predicte 98.4 1.3E-05 2.7E-10 73.2 14.8 150 44-227 69-240 (258)
141 PF03437 BtpA: BtpA family; I 98.4 1.9E-05 4.1E-10 71.6 15.7 152 45-223 80-236 (254)
142 PRK01033 imidazole glycerol ph 98.4 2.3E-06 4.9E-11 78.1 9.9 89 133-231 31-120 (258)
143 cd00429 RPE Ribulose-5-phospha 98.4 2E-05 4.4E-10 69.1 15.6 160 47-227 1-207 (211)
144 PLN02274 inosine-5'-monophosph 98.4 1.9E-05 4.1E-10 78.6 17.1 137 54-220 244-386 (505)
145 cd04743 NPD_PKS 2-Nitropropane 98.4 1.1E-05 2.4E-10 75.4 14.2 142 44-223 54-211 (320)
146 TIGR03128 RuMP_HxlA 3-hexulose 98.3 6.8E-05 1.5E-09 65.8 18.3 143 45-223 52-195 (206)
147 COG0159 TrpA Tryptophan syntha 98.3 2.6E-05 5.6E-10 70.8 15.7 159 56-218 29-237 (265)
148 cd00452 KDPG_aldolase KDPG and 98.3 2.2E-05 4.8E-10 68.3 14.7 146 45-218 3-175 (190)
149 TIGR01768 GGGP-family geranylg 98.3 3.4E-05 7.5E-10 68.6 15.9 150 60-227 16-221 (223)
150 cd02812 PcrB_like PcrB_like pr 98.3 2.6E-05 5.7E-10 69.2 15.1 56 172-227 161-217 (219)
151 TIGR01304 IMP_DH_rel_2 IMP deh 98.3 1.5E-05 3.2E-10 76.2 14.5 138 56-219 140-289 (369)
152 PF00977 His_biosynth: Histidi 98.3 1.5E-06 3.2E-11 78.0 7.2 89 133-231 30-119 (229)
153 PRK08649 inosine 5-monophospha 98.3 9.7E-06 2.1E-10 77.5 13.1 145 56-222 139-293 (368)
154 PF01645 Glu_synthase: Conserv 98.3 4.7E-06 1E-10 79.3 9.7 114 97-218 185-307 (368)
155 PRK07807 inosine 5-monophospha 98.2 2.8E-05 6.1E-10 76.9 14.5 138 52-221 221-366 (479)
156 PRK05567 inosine 5'-monophosph 98.2 4.6E-05 9.9E-10 75.8 16.0 144 48-220 218-366 (486)
157 PF00290 Trp_syntA: Tryptophan 98.2 7.8E-05 1.7E-09 67.9 15.9 189 47-257 11-254 (259)
158 cd00958 DhnA Class I fructose- 98.2 8.9E-05 1.9E-09 66.5 16.1 141 55-225 73-225 (235)
159 PRK08883 ribulose-phosphate 3- 98.2 7.9E-05 1.7E-09 66.5 15.2 150 48-222 2-203 (220)
160 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 4.4E-05 9.6E-10 75.5 14.8 144 47-219 214-362 (475)
161 PRK14114 1-(5-phosphoribosyl)- 98.2 9.2E-06 2E-10 73.4 9.1 86 133-229 31-117 (241)
162 PLN02334 ribulose-phosphate 3- 98.2 0.00018 3.9E-09 64.5 17.1 143 44-224 64-212 (229)
163 TIGR01919 hisA-trpF 1-(5-phosp 98.1 1.6E-05 3.4E-10 72.0 10.0 103 118-231 16-120 (243)
164 COG0106 HisA Phosphoribosylfor 98.1 1.1E-05 2.5E-10 71.9 8.6 89 133-231 32-121 (241)
165 TIGR02129 hisA_euk phosphoribo 98.1 1.4E-05 3.1E-10 72.3 9.4 80 135-231 41-125 (253)
166 PRK07226 fructose-bisphosphate 98.1 0.0001 2.2E-09 67.6 15.2 148 45-225 73-242 (267)
167 PRK04169 geranylgeranylglycery 98.1 0.00027 5.9E-09 63.4 17.4 52 170-222 168-221 (232)
168 PRK09140 2-dehydro-3-deoxy-6-p 98.1 0.00022 4.7E-09 63.0 16.5 150 45-222 9-187 (206)
169 TIGR00126 deoC deoxyribose-pho 98.1 0.00011 2.5E-09 65.0 14.4 134 54-212 65-202 (211)
170 COG2070 Dioxygenases related t 98.1 1.9E-05 4.2E-10 74.6 9.5 82 135-221 137-220 (336)
171 PRK13586 1-(5-phosphoribosyl)- 98.0 2.6E-05 5.7E-10 70.0 9.3 88 133-231 31-119 (232)
172 PRK05581 ribulose-phosphate 3- 98.0 0.00022 4.9E-09 63.0 15.2 160 48-227 6-211 (220)
173 PLN02446 (5-phosphoribosyl)-5- 98.0 2.4E-05 5.2E-10 71.1 8.9 84 133-231 44-132 (262)
174 PRK05283 deoxyribose-phosphate 98.0 0.00016 3.4E-09 65.7 14.1 138 57-224 82-227 (257)
175 TIGR01305 GMP_reduct_1 guanosi 98.0 0.00019 4E-09 67.2 14.9 141 46-219 96-246 (343)
176 cd00959 DeoC 2-deoxyribose-5-p 98.0 0.00023 4.9E-09 62.7 14.9 128 57-209 68-198 (203)
177 PRK07107 inosine 5-monophospha 98.0 0.00013 2.8E-09 72.7 14.4 135 57-219 240-386 (502)
178 cd04726 KGPDC_HPS 3-Keto-L-gul 98.0 0.0006 1.3E-08 59.4 16.9 140 45-223 53-195 (202)
179 PLN02617 imidazole glycerol ph 98.0 2.9E-05 6.2E-10 77.7 9.2 92 133-231 268-383 (538)
180 cd04723 HisA_HisF Phosphoribos 98.0 4.1E-05 8.8E-10 68.9 9.3 86 134-231 37-123 (233)
181 PRK05096 guanosine 5'-monophos 97.9 0.00024 5.2E-09 66.5 13.5 140 47-221 98-249 (346)
182 PRK06552 keto-hydroxyglutarate 97.9 0.00045 9.7E-09 61.3 14.3 147 45-219 12-188 (213)
183 PF05690 ThiG: Thiazole biosyn 97.9 0.00057 1.2E-08 60.7 14.7 153 37-219 53-209 (247)
184 PF04481 DUF561: Protein of un 97.9 7.5E-05 1.6E-09 65.3 8.8 153 44-217 60-217 (242)
185 PTZ00170 D-ribulose-5-phosphat 97.9 0.00061 1.3E-08 61.1 15.1 154 47-222 8-209 (228)
186 CHL00162 thiG thiamin biosynth 97.9 0.001 2.2E-08 59.8 15.8 135 54-218 80-222 (267)
187 KOG0538|consensus 97.8 0.00029 6.3E-09 64.6 12.4 131 98-262 207-342 (363)
188 cd00405 PRAI Phosphoribosylant 97.8 0.0014 2.9E-08 57.6 16.5 178 2-223 5-190 (203)
189 PRK07455 keto-hydroxyglutarate 97.8 0.00097 2.1E-08 58.0 15.2 147 45-219 11-185 (187)
190 PRK04302 triosephosphate isome 97.8 0.0013 2.7E-08 58.8 16.2 155 45-227 56-215 (223)
191 PRK13307 bifunctional formalde 97.8 0.0018 3.9E-08 62.4 18.1 140 44-223 225-367 (391)
192 COG1646 Predicted phosphate-bi 97.8 0.0006 1.3E-08 60.4 13.2 56 170-228 178-234 (240)
193 PF00218 IGPS: Indole-3-glycer 97.8 0.00079 1.7E-08 61.2 14.5 131 56-228 120-252 (254)
194 PRK13957 indole-3-glycerol-pho 97.8 0.0025 5.4E-08 57.7 17.5 142 46-229 103-245 (247)
195 PRK08227 autoinducer 2 aldolas 97.8 0.0018 3.8E-08 59.2 16.7 147 44-222 73-234 (264)
196 KOG2334|consensus 97.8 4.9E-06 1.1E-10 78.9 -0.2 133 74-225 289-422 (477)
197 cd04742 NPD_FabD 2-Nitropropan 97.8 0.00073 1.6E-08 65.5 14.7 81 136-222 167-256 (418)
198 cd06556 ICL_KPHMT Members of t 97.8 0.00054 1.2E-08 61.9 12.9 109 45-194 73-199 (240)
199 PRK07028 bifunctional hexulose 97.7 0.0012 2.7E-08 64.6 16.1 125 64-223 74-199 (430)
200 COG1304 idi Isopentenyl diphos 97.7 6.6E-05 1.4E-09 71.5 6.8 141 97-272 201-346 (360)
201 PRK08005 epimerase; Validated 97.7 0.0029 6.2E-08 56.0 16.6 151 48-223 3-200 (210)
202 COG0274 DeoC Deoxyribose-phosp 97.7 0.00095 2.1E-08 59.0 13.3 133 54-211 72-209 (228)
203 PF00478 IMPDH: IMP dehydrogen 97.7 0.00055 1.2E-08 64.9 12.6 137 47-219 98-245 (352)
204 PRK00043 thiE thiamine-phospha 97.7 0.0004 8.6E-09 61.0 10.9 80 138-223 117-197 (212)
205 TIGR01182 eda Entner-Doudoroff 97.7 0.0018 3.9E-08 57.0 14.7 155 45-222 7-184 (204)
206 cd00377 ICL_PEPM Members of th 97.7 0.002 4.3E-08 58.4 15.4 152 44-217 68-229 (243)
207 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00016 3.5E-09 64.5 8.1 83 133-228 37-122 (221)
208 cd00564 TMP_TenI Thiamine mono 97.7 0.00043 9.2E-09 59.5 10.5 84 137-227 107-191 (196)
209 TIGR02317 prpB methylisocitrat 97.7 0.0021 4.5E-08 59.5 15.5 153 44-219 72-234 (285)
210 COG0434 SgcQ Predicted TIM-bar 97.7 0.0013 2.9E-08 58.4 13.2 155 42-221 82-239 (263)
211 PRK11320 prpB 2-methylisocitra 97.6 0.0026 5.6E-08 59.1 15.7 153 44-219 77-239 (292)
212 COG0269 SgbH 3-hexulose-6-phos 97.6 0.0058 1.3E-07 53.8 16.7 141 44-220 55-198 (217)
213 COG0036 Rpe Pentose-5-phosphat 97.6 0.0029 6.3E-08 55.9 14.9 157 46-227 4-210 (220)
214 PF01791 DeoC: DeoC/LacD famil 97.6 0.00041 8.9E-09 62.4 9.8 137 61-219 79-235 (236)
215 PRK06806 fructose-bisphosphate 97.6 0.0089 1.9E-07 55.3 18.6 114 98-220 113-236 (281)
216 TIGR00693 thiE thiamine-phosph 97.6 0.00064 1.4E-08 59.1 10.4 78 139-222 110-188 (196)
217 PRK08745 ribulose-phosphate 3- 97.6 0.0073 1.6E-07 54.0 17.0 150 48-222 6-207 (223)
218 cd04727 pdxS PdxS is a subunit 97.6 0.0012 2.7E-08 60.2 12.2 119 62-213 19-138 (283)
219 TIGR02319 CPEP_Pphonmut carbox 97.5 0.0053 1.1E-07 57.0 16.0 156 43-219 75-238 (294)
220 cd03329 MR_like_4 Mandelate ra 97.5 0.0032 6.9E-08 60.4 14.4 124 56-214 143-271 (368)
221 PRK07114 keto-hydroxyglutarate 97.5 0.011 2.3E-07 52.9 16.4 155 45-222 14-196 (222)
222 COG2022 ThiG Uncharacterized e 97.4 0.0079 1.7E-07 53.3 14.9 133 54-217 79-214 (262)
223 TIGR02814 pfaD_fam PfaD family 97.4 0.0049 1.1E-07 60.2 14.6 79 138-222 174-261 (444)
224 PRK05718 keto-hydroxyglutarate 97.4 0.0056 1.2E-07 54.3 13.7 148 45-219 14-188 (212)
225 TIGR02320 PEP_mutase phosphoen 97.4 0.013 2.8E-07 54.3 16.6 156 44-218 77-244 (285)
226 cd03321 mandelate_racemase Man 97.3 0.004 8.7E-08 59.4 13.4 148 45-228 130-281 (355)
227 TIGR01859 fruc_bis_ald_ fructo 97.3 0.034 7.4E-07 51.5 19.0 76 135-218 156-234 (282)
228 PRK06015 keto-hydroxyglutarate 97.3 0.026 5.7E-07 49.6 17.1 147 45-219 3-177 (201)
229 PF01680 SOR_SNZ: SOR/SNZ fami 97.3 0.0011 2.4E-08 56.3 7.6 115 63-211 26-142 (208)
230 PF13714 PEP_mutase: Phosphoen 97.3 0.0048 1E-07 55.7 12.2 146 45-217 69-222 (238)
231 PRK13802 bifunctional indole-3 97.2 0.011 2.4E-07 61.0 15.8 111 98-231 145-257 (695)
232 COG0134 TrpC Indole-3-glycerol 97.2 0.0089 1.9E-07 54.1 13.4 109 98-229 141-251 (254)
233 PRK06801 hypothetical protein; 97.2 0.023 5.1E-07 52.6 15.8 114 96-219 111-238 (286)
234 PRK00311 panB 3-methyl-2-oxobu 97.2 0.0058 1.3E-07 55.9 11.6 106 47-193 78-203 (264)
235 PRK11750 gltB glutamate syntha 97.1 0.0022 4.7E-08 70.2 10.1 113 98-219 979-1101(1485)
236 PF09370 TIM-br_sig_trns: TIM- 97.1 0.0031 6.7E-08 57.2 9.4 159 38-217 75-249 (268)
237 PRK11840 bifunctional sulfur c 97.1 0.037 8E-07 51.8 16.6 134 55-218 147-282 (326)
238 PRK02615 thiamine-phosphate py 97.1 0.0041 8.9E-08 59.1 10.6 77 138-222 253-330 (347)
239 PF01081 Aldolase: KDPG and KH 97.1 0.0042 9.2E-08 54.3 9.8 155 46-223 8-185 (196)
240 cd03325 D-galactonate_dehydrat 97.1 0.015 3.3E-07 55.4 14.3 144 44-215 111-258 (352)
241 cd00377 ICL_PEPM Members of th 97.1 0.0089 1.9E-07 54.1 12.1 158 63-229 21-193 (243)
242 cd00408 DHDPS-like Dihydrodipi 97.1 0.01 2.2E-07 54.6 12.7 127 55-206 15-149 (281)
243 PF01884 PcrB: PcrB family; I 97.1 0.00098 2.1E-08 59.6 5.6 53 175-228 171-224 (230)
244 COG2513 PrpB PEP phosphonomuta 97.1 0.01 2.2E-07 54.5 12.0 152 43-217 76-237 (289)
245 PF00834 Ribul_P_3_epim: Ribul 97.1 0.0045 9.7E-08 54.5 9.5 148 48-220 2-200 (201)
246 PF00478 IMPDH: IMP dehydrogen 97.1 0.0039 8.4E-08 59.2 9.7 99 100-216 73-179 (352)
247 PRK09427 bifunctional indole-3 97.1 0.013 2.7E-07 57.8 13.6 110 99-231 145-255 (454)
248 PRK06512 thiamine-phosphate py 97.0 0.0066 1.4E-07 54.2 10.6 78 138-224 124-202 (221)
249 PRK07565 dihydroorotate dehydr 97.0 0.0058 1.3E-07 57.9 10.7 107 99-214 86-197 (334)
250 cd06557 KPHMT-like Ketopantoat 97.0 0.012 2.7E-07 53.5 12.2 150 3-193 19-200 (254)
251 PLN02460 indole-3-glycerol-pho 97.0 0.017 3.7E-07 54.5 13.1 78 141-229 246-332 (338)
252 COG4948 L-alanine-DL-glutamate 97.0 0.012 2.7E-07 56.4 12.7 133 46-214 131-269 (372)
253 cd03324 rTSbeta_L-fuconate_deh 97.0 0.023 4.9E-07 55.5 14.4 125 54-214 194-324 (415)
254 TIGR00222 panB 3-methyl-2-oxob 96.9 0.013 2.8E-07 53.5 11.5 99 56-193 90-202 (263)
255 cd00381 IMPDH IMPDH: The catal 96.9 0.0089 1.9E-07 56.5 10.6 94 99-214 69-163 (325)
256 PRK14017 galactonate dehydrata 96.9 0.026 5.7E-07 54.4 14.1 148 44-219 112-263 (382)
257 cd00331 IGPS Indole-3-glycerol 96.9 0.0051 1.1E-07 54.4 8.4 82 133-228 32-114 (217)
258 PRK08091 ribulose-phosphate 3- 96.9 0.1 2.2E-06 46.8 16.5 150 45-223 12-216 (228)
259 COG0352 ThiE Thiamine monophos 96.9 0.013 2.9E-07 51.8 10.7 86 135-228 114-200 (211)
260 PRK06852 aldolase; Validated 96.8 0.046 9.9E-07 51.0 14.4 155 45-223 92-274 (304)
261 PRK08185 hypothetical protein; 96.8 0.082 1.8E-06 48.9 16.0 162 44-217 36-231 (283)
262 cd03328 MR_like_3 Mandelate ra 96.8 0.026 5.6E-07 53.9 13.2 124 56-216 138-267 (352)
263 PTZ00314 inosine-5'-monophosph 96.8 0.0056 1.2E-07 61.1 8.7 68 134-214 242-310 (495)
264 PF00701 DHDPS: Dihydrodipicol 96.8 0.12 2.6E-06 47.7 17.0 153 42-232 67-222 (289)
265 PLN02424 ketopantoate hydroxym 96.7 0.02 4.2E-07 53.8 11.3 113 43-193 93-224 (332)
266 PRK03512 thiamine-phosphate py 96.7 0.023 4.9E-07 50.4 11.3 82 138-225 115-197 (211)
267 cd03322 rpsA The starvation se 96.7 0.042 9.1E-07 52.6 13.9 128 45-216 115-246 (361)
268 PF02581 TMP-TENI: Thiamine mo 96.7 0.0091 2E-07 51.4 8.4 72 138-217 108-180 (180)
269 cd03326 MR_like_1 Mandelate ra 96.7 0.049 1.1E-06 52.7 14.2 124 55-214 159-290 (385)
270 TIGR02321 Pphn_pyruv_hyd phosp 96.6 0.14 2.9E-06 47.7 16.2 156 44-218 74-239 (290)
271 TIGR02534 mucon_cyclo muconate 96.6 0.094 2E-06 50.3 15.6 135 45-213 130-267 (368)
272 PRK07998 gatY putative fructos 96.6 0.11 2.3E-06 48.1 15.1 113 96-218 111-233 (283)
273 PRK07315 fructose-bisphosphate 96.6 0.42 9.2E-06 44.5 19.1 78 137-221 158-239 (293)
274 cd06557 KPHMT-like Ketopantoat 96.5 0.049 1.1E-06 49.6 12.4 88 63-154 24-113 (254)
275 cd00945 Aldolase_Class_I Class 96.5 0.19 4.2E-06 42.9 15.7 133 56-217 11-152 (201)
276 PRK05848 nicotinate-nucleotide 96.5 0.039 8.4E-07 50.8 11.6 91 102-222 168-265 (273)
277 PRK12858 tagatose 1,6-diphosph 96.5 0.066 1.4E-06 50.9 13.3 169 44-222 82-284 (340)
278 cd03327 MR_like_2 Mandelate ra 96.5 0.074 1.6E-06 50.5 13.8 140 45-214 108-252 (341)
279 cd00952 CHBPH_aldolase Trans-o 96.5 0.038 8.2E-07 51.8 11.6 85 55-154 26-112 (309)
280 TIGR01928 menC_lowGC/arch o-su 96.5 0.087 1.9E-06 49.7 14.0 132 44-214 120-253 (324)
281 cd03318 MLE Muconate Lactonizi 96.4 0.15 3.3E-06 48.7 15.8 148 45-228 131-283 (365)
282 cd03317 NAAAR N-acylamino acid 96.4 0.12 2.5E-06 49.3 14.8 137 45-220 125-264 (354)
283 TIGR02317 prpB methylisocitrat 96.4 0.064 1.4E-06 49.7 12.5 87 63-155 25-111 (285)
284 cd03320 OSBS o-Succinylbenzoat 96.4 0.1 2.3E-06 47.5 13.8 138 45-221 72-213 (263)
285 PRK07709 fructose-bisphosphate 96.4 0.22 4.8E-06 46.2 15.9 114 96-217 114-236 (285)
286 cd04740 DHOD_1B_like Dihydroor 96.4 0.093 2E-06 48.6 13.6 155 46-213 11-185 (296)
287 COG0069 GltB Glutamate synthas 96.4 0.021 4.5E-07 56.2 9.4 156 44-218 212-407 (485)
288 PRK00230 orotidine 5'-phosphat 96.3 0.09 1.9E-06 47.2 12.7 138 50-228 60-221 (230)
289 TIGR01302 IMP_dehydrog inosine 96.3 0.014 3E-07 57.6 8.1 68 134-214 225-293 (450)
290 cd04729 NanE N-acetylmannosami 96.3 0.19 4.1E-06 44.5 14.5 124 56-214 25-150 (219)
291 cd06556 ICL_KPHMT Members of t 96.3 0.07 1.5E-06 48.2 11.8 142 63-230 24-189 (240)
292 TIGR02319 CPEP_Pphonmut carbox 96.2 0.087 1.9E-06 49.0 12.4 155 63-230 28-199 (294)
293 TIGR01303 IMP_DH_rel_1 IMP deh 96.2 0.015 3.3E-07 57.7 7.9 69 133-214 225-294 (475)
294 PRK11320 prpB 2-methylisocitra 96.2 0.082 1.8E-06 49.1 12.2 155 63-229 29-199 (292)
295 cd03323 D-glucarate_dehydratas 96.2 0.099 2.1E-06 50.7 13.3 121 56-215 168-292 (395)
296 PRK15072 bifunctional D-altron 96.2 0.13 2.9E-06 49.9 14.3 142 52-214 123-287 (404)
297 COG0329 DapA Dihydrodipicolina 96.2 0.071 1.5E-06 49.8 11.8 125 55-204 22-154 (299)
298 TIGR01305 GMP_reduct_1 guanosi 96.2 0.038 8.3E-07 52.0 9.8 67 135-214 109-178 (343)
299 PRK13957 indole-3-glycerol-pho 96.2 0.028 6.1E-07 50.9 8.7 75 133-220 62-137 (247)
300 PF04131 NanE: Putative N-acet 96.2 0.094 2E-06 45.4 11.4 114 60-213 1-118 (192)
301 PRK05458 guanosine 5'-monophos 96.2 0.032 6.9E-07 52.6 9.3 100 94-214 65-168 (326)
302 PRK08610 fructose-bisphosphate 96.1 0.32 6.9E-06 45.1 15.5 115 95-217 113-236 (286)
303 TIGR01927 menC_gamma/gm+ o-suc 96.1 0.21 4.7E-06 46.7 14.7 147 45-229 100-251 (307)
304 cd04739 DHOD_like Dihydroorota 96.1 0.37 7.9E-06 45.5 16.4 157 45-214 12-195 (325)
305 PRK09722 allulose-6-phosphate 96.1 0.3 6.6E-06 43.8 14.8 132 47-214 4-137 (229)
306 PLN02334 ribulose-phosphate 3- 96.1 0.4 8.6E-06 42.8 15.8 133 46-214 8-146 (229)
307 TIGR01361 DAHP_synth_Bsub phos 96.1 0.23 4.9E-06 45.5 14.2 138 57-216 75-231 (260)
308 TIGR01858 tag_bisphos_ald clas 96.1 0.33 7.2E-06 44.9 15.3 116 95-218 108-234 (282)
309 KOG4175|consensus 96.0 0.3 6.5E-06 42.7 13.7 44 175-218 196-239 (268)
310 PRK01130 N-acetylmannosamine-6 96.0 0.29 6.3E-06 43.3 14.4 124 56-214 21-146 (221)
311 PRK07535 methyltetrahydrofolat 96.0 0.14 3.1E-06 46.8 12.5 73 54-149 21-95 (261)
312 COG1830 FbaB DhnA-type fructos 96.0 0.21 4.5E-06 45.5 13.3 148 45-222 77-245 (265)
313 PRK00311 panB 3-methyl-2-oxobu 96.0 0.11 2.5E-06 47.5 11.8 88 63-154 27-116 (264)
314 TIGR01306 GMP_reduct_2 guanosi 96.0 0.053 1.2E-06 51.0 9.8 100 94-214 62-165 (321)
315 PRK05096 guanosine 5'-monophos 96.0 0.048 1E-06 51.3 9.4 98 99-216 81-181 (346)
316 cd00947 TBP_aldolase_IIB Tagat 96.0 0.4 8.6E-06 44.3 15.3 116 95-217 105-229 (276)
317 PRK02714 O-succinylbenzoate sy 96.0 0.27 5.8E-06 46.3 14.6 131 46-214 110-247 (320)
318 PRK06843 inosine 5-monophospha 96.0 0.098 2.1E-06 50.8 11.7 68 134-214 154-222 (404)
319 COG2513 PrpB PEP phosphonomuta 96.0 0.14 3E-06 47.2 12.0 155 63-231 30-201 (289)
320 PLN02274 inosine-5'-monophosph 95.9 0.04 8.7E-07 55.1 9.4 68 134-214 249-317 (505)
321 PF02548 Pantoate_transf: Keto 95.9 0.079 1.7E-06 48.2 10.3 110 56-214 92-215 (261)
322 PRK08999 hypothetical protein; 95.9 0.046 1E-06 51.0 9.2 72 138-217 239-311 (312)
323 PRK14057 epimerase; Provisiona 95.9 0.52 1.1E-05 42.9 15.4 127 45-214 19-161 (254)
324 PRK07428 nicotinate-nucleotide 95.9 0.12 2.5E-06 48.0 11.5 70 137-222 208-279 (288)
325 PRK09250 fructose-bisphosphate 95.9 0.17 3.6E-06 48.0 12.5 167 44-222 124-326 (348)
326 TIGR03249 KdgD 5-dehydro-4-deo 95.8 0.22 4.8E-06 46.3 13.2 126 55-206 23-153 (296)
327 PRK13813 orotidine 5'-phosphat 95.8 0.76 1.7E-05 40.4 16.1 136 50-223 60-201 (215)
328 PRK05437 isopentenyl pyrophosp 95.8 0.14 3E-06 48.9 12.0 113 91-214 97-217 (352)
329 cd00950 DHDPS Dihydrodipicolin 95.8 0.17 3.6E-06 46.6 12.2 127 55-206 18-152 (284)
330 PRK07084 fructose-bisphosphate 95.8 0.62 1.3E-05 43.9 15.9 104 96-201 122-232 (321)
331 PRK03170 dihydrodipicolinate s 95.8 0.18 3.9E-06 46.7 12.4 126 55-205 19-152 (292)
332 TIGR02320 PEP_mutase phosphoen 95.8 0.17 3.6E-06 47.0 12.0 145 63-214 21-189 (285)
333 TIGR00167 cbbA ketose-bisphosp 95.8 0.49 1.1E-05 43.9 15.1 115 95-217 113-239 (288)
334 TIGR01521 FruBisAldo_II_B fruc 95.8 1.5 3.3E-05 41.7 18.5 81 135-217 174-278 (347)
335 cd00408 DHDPS-like Dihydrodipi 95.7 1.6 3.5E-05 40.0 21.2 154 42-232 63-218 (281)
336 PRK09517 multifunctional thiam 95.7 0.055 1.2E-06 56.8 9.7 75 144-225 127-205 (755)
337 cd00954 NAL N-Acetylneuraminic 95.7 0.28 6E-06 45.4 13.4 127 55-205 18-153 (288)
338 PF01487 DHquinase_I: Type I 3 95.7 0.79 1.7E-05 40.6 15.8 93 50-154 2-97 (224)
339 cd00423 Pterin_binding Pterin 95.7 0.14 3.1E-06 46.6 11.2 80 55-149 21-100 (258)
340 PLN02898 HMP-P kinase/thiamin- 95.7 0.08 1.7E-06 53.0 10.3 77 138-222 403-483 (502)
341 PRK12290 thiE thiamine-phospha 95.7 0.1 2.2E-06 50.9 10.5 81 138-224 313-402 (437)
342 PRK13397 3-deoxy-7-phosphohept 95.7 0.42 9E-06 43.4 13.8 109 91-214 104-219 (250)
343 PRK04147 N-acetylneuraminate l 95.6 1.5 3.2E-05 40.6 18.0 151 42-233 70-225 (293)
344 cd00951 KDGDH 5-dehydro-4-deox 95.6 0.15 3.2E-06 47.3 11.2 83 55-153 18-102 (289)
345 TIGR02151 IPP_isom_2 isopenten 95.6 0.18 3.9E-06 47.8 11.8 113 91-214 90-210 (333)
346 PRK03620 5-dehydro-4-deoxygluc 95.6 0.15 3.2E-06 47.6 11.2 84 55-154 25-110 (303)
347 PRK15452 putative protease; Pr 95.6 0.56 1.2E-05 46.2 15.6 132 54-217 10-144 (443)
348 cd00739 DHPS DHPS subgroup of 95.6 0.16 3.5E-06 46.3 11.1 81 55-150 21-101 (257)
349 PRK12738 kbaY tagatose-bisphos 95.6 0.78 1.7E-05 42.5 15.7 115 95-217 110-235 (286)
350 TIGR02313 HpaI-NOT-DapA 2,4-di 95.6 0.33 7.2E-06 45.1 13.4 127 55-205 18-152 (294)
351 COG0413 PanB Ketopantoate hydr 95.6 0.2 4.4E-06 45.3 11.3 98 57-193 93-203 (268)
352 PRK14040 oxaloacetate decarbox 95.5 1.4 3.1E-05 45.1 18.7 214 60-307 99-325 (593)
353 PRK07259 dihydroorotate dehydr 95.5 0.58 1.3E-05 43.5 14.9 140 62-213 27-188 (301)
354 PRK09196 fructose-1,6-bisphosp 95.5 1.9 4.1E-05 41.0 18.2 103 96-200 119-240 (347)
355 COG0135 TrpF Phosphoribosylant 95.5 0.87 1.9E-05 40.2 15.0 179 2-222 8-191 (208)
356 PRK12857 fructose-1,6-bisphosp 95.5 0.4 8.8E-06 44.4 13.5 115 95-217 110-235 (284)
357 TIGR00674 dapA dihydrodipicoli 95.5 0.27 5.8E-06 45.4 12.4 127 55-206 16-150 (285)
358 PRK08673 3-deoxy-7-phosphohept 95.5 0.53 1.2E-05 44.6 14.4 150 43-215 131-298 (335)
359 PRK07807 inosine 5-monophospha 95.5 0.06 1.3E-06 53.5 8.4 70 133-215 227-297 (479)
360 PF00701 DHDPS: Dihydrodipicol 95.4 0.37 8E-06 44.5 13.1 84 56-154 20-105 (289)
361 PRK05567 inosine 5'-monophosph 95.4 0.054 1.2E-06 54.0 8.0 68 134-214 229-297 (486)
362 TIGR00078 nadC nicotinate-nucl 95.4 0.23 4.9E-06 45.6 11.4 61 136-215 189-251 (265)
363 PRK03170 dihydrodipicolinate s 95.4 2 4.4E-05 39.6 18.0 154 42-233 67-223 (292)
364 cd00954 NAL N-Acetylneuraminic 95.4 2.2 4.8E-05 39.4 21.2 154 42-233 67-224 (288)
365 PF01116 F_bP_aldolase: Fructo 95.4 0.47 1E-05 44.1 13.5 118 96-218 110-239 (287)
366 TIGR02321 Pphn_pyruv_hyd phosp 95.4 0.59 1.3E-05 43.5 14.1 158 63-231 27-202 (290)
367 PRK05835 fructose-bisphosphate 95.4 0.95 2.1E-05 42.4 15.4 100 96-202 111-220 (307)
368 PRK13398 3-deoxy-7-phosphohept 95.3 0.45 9.7E-06 43.7 13.2 139 57-217 77-234 (266)
369 PRK15063 isocitrate lyase; Pro 95.3 0.65 1.4E-05 45.2 14.6 131 46-195 147-314 (428)
370 PRK12737 gatY tagatose-bisphos 95.3 2.4 5.2E-05 39.3 19.5 116 95-218 110-236 (284)
371 TIGR00683 nanA N-acetylneurami 95.3 0.42 9.1E-06 44.3 13.1 84 55-153 18-104 (290)
372 PF00809 Pterin_bind: Pterin b 95.3 0.12 2.5E-06 45.7 8.9 78 58-150 19-97 (210)
373 PRK09195 gatY tagatose-bisphos 95.2 2.5 5.5E-05 39.2 19.2 117 94-218 109-236 (284)
374 TIGR03247 glucar-dehydr glucar 95.2 0.51 1.1E-05 46.5 13.8 121 56-213 180-308 (441)
375 PRK05742 nicotinate-nucleotide 95.2 0.34 7.4E-06 44.7 11.8 68 136-222 200-269 (277)
376 cd01572 QPRTase Quinolinate ph 95.2 0.28 6E-06 45.1 11.2 64 136-218 193-258 (268)
377 cd04733 OYE_like_2_FMN Old yel 95.1 0.27 5.8E-06 46.6 11.5 104 43-155 214-324 (338)
378 PRK01222 N-(5'-phosphoribosyl) 95.1 1.9 4.2E-05 38.0 16.2 174 2-221 9-190 (210)
379 PF13714 PEP_mutase: Phosphoen 95.1 0.43 9.4E-06 43.1 12.1 147 63-231 21-190 (238)
380 PRK04147 N-acetylneuraminate l 95.1 0.28 6E-06 45.5 11.2 126 55-205 21-155 (293)
381 cd01573 modD_like ModD; Quinol 95.1 0.22 4.7E-06 45.9 10.3 64 138-217 196-261 (272)
382 cd04737 LOX_like_FMN L-Lactate 95.1 0.32 7E-06 46.4 11.6 51 170-222 206-261 (351)
383 PRK08072 nicotinate-nucleotide 95.0 0.3 6.4E-06 45.1 10.9 68 136-222 199-268 (277)
384 TIGR01182 eda Entner-Doudoroff 95.0 0.19 4E-06 44.3 9.2 108 116-249 9-117 (204)
385 TIGR00284 dihydropteroate synt 94.9 0.13 2.8E-06 51.3 8.9 51 58-121 165-215 (499)
386 PLN02424 ketopantoate hydroxym 94.9 0.98 2.1E-05 42.6 14.1 123 42-190 31-155 (332)
387 cd02922 FCB2_FMN Flavocytochro 94.9 0.42 9.2E-06 45.5 11.9 94 115-214 118-241 (344)
388 cd02810 DHOD_DHPD_FMN Dihydroo 94.9 1.3 2.9E-05 40.7 15.1 144 63-214 25-196 (289)
389 KOG0623|consensus 94.9 0.063 1.4E-06 50.3 6.0 68 134-211 443-512 (541)
390 PRK13396 3-deoxy-7-phosphohept 94.8 0.8 1.7E-05 43.7 13.4 147 45-214 141-306 (352)
391 PF01081 Aldolase: KDPG and KH 94.7 0.28 6E-06 43.0 9.5 108 116-249 9-117 (196)
392 cd04726 KGPDC_HPS 3-Keto-L-gul 94.7 2.5 5.4E-05 36.5 15.9 128 48-214 3-133 (202)
393 cd02811 IDI-2_FMN Isopentenyl- 94.7 0.47 1E-05 44.8 11.8 113 91-214 89-209 (326)
394 PRK12595 bifunctional 3-deoxy- 94.7 1.3 2.9E-05 42.4 14.9 147 53-223 164-329 (360)
395 PRK15129 L-Ala-D/L-Glu epimera 94.7 1.7 3.6E-05 40.9 15.5 129 46-214 119-247 (321)
396 PRK13399 fructose-1,6-bisphosp 94.7 1.8 3.8E-05 41.3 15.3 103 96-200 119-240 (347)
397 cd02809 alpha_hydroxyacid_oxid 94.6 0.39 8.5E-06 44.7 10.9 84 114-213 115-199 (299)
398 TIGR03849 arch_ComA phosphosul 94.6 0.87 1.9E-05 41.0 12.4 108 58-185 71-184 (237)
399 PRK01222 N-(5'-phosphoribosyl) 94.6 1.6 3.4E-05 38.6 14.1 125 49-215 4-132 (210)
400 PRK06015 keto-hydroxyglutarate 94.6 0.27 5.9E-06 43.2 9.1 108 116-249 5-113 (201)
401 PRK11613 folP dihydropteroate 94.5 0.29 6.2E-06 45.3 9.5 60 56-122 36-98 (282)
402 PLN02979 glycolate oxidase 94.5 0.55 1.2E-05 44.9 11.5 43 170-214 208-251 (366)
403 PRK02901 O-succinylbenzoate sy 94.4 2 4.4E-05 40.6 15.4 134 48-220 81-220 (327)
404 cd00019 AP2Ec AP endonuclease 94.4 0.54 1.2E-05 42.9 11.2 140 58-209 10-166 (279)
405 cd00956 Transaldolase_FSA Tran 94.4 2.6 5.6E-05 37.3 15.0 128 45-214 51-185 (211)
406 TIGR00222 panB 3-methyl-2-oxob 94.3 1.5 3.2E-05 40.2 13.6 128 63-213 27-179 (263)
407 PRK06552 keto-hydroxyglutarate 94.3 0.73 1.6E-05 40.9 11.4 110 116-250 14-126 (213)
408 PRK05105 O-succinylbenzoate sy 94.3 1.3 2.9E-05 41.6 13.8 122 52-213 111-236 (322)
409 PRK08385 nicotinate-nucleotide 94.3 0.56 1.2E-05 43.3 10.9 71 136-222 193-267 (278)
410 PRK09722 allulose-6-phosphate 94.3 3.8 8.2E-05 36.8 15.9 139 44-219 58-203 (229)
411 COG1411 Uncharacterized protei 94.2 0.43 9.2E-06 41.7 9.3 50 172-222 168-218 (229)
412 PF04476 DUF556: Protein of un 94.2 1.6 3.5E-05 39.1 13.2 134 65-225 14-162 (235)
413 PLN02535 glycolate oxidase 94.2 0.59 1.3E-05 44.8 11.3 44 169-214 207-251 (364)
414 cd00953 KDG_aldolase KDG (2-ke 94.2 1.5 3.2E-05 40.4 13.7 85 54-154 16-100 (279)
415 COG0800 Eda 2-keto-3-deoxy-6-p 94.2 1 2.3E-05 39.7 11.9 148 45-217 12-184 (211)
416 PRK06256 biotin synthase; Vali 94.2 1 2.2E-05 42.5 12.8 141 65-215 156-301 (336)
417 cd01568 QPRTase_NadC Quinolina 94.2 0.55 1.2E-05 43.2 10.6 66 138-222 194-263 (269)
418 PRK05718 keto-hydroxyglutarate 94.1 0.91 2E-05 40.2 11.5 99 104-229 7-106 (212)
419 PRK02227 hypothetical protein; 94.1 1.7 3.7E-05 39.1 13.1 136 65-225 14-162 (238)
420 PRK09140 2-dehydro-3-deoxy-6-p 94.0 0.32 7E-06 42.9 8.5 80 115-214 10-90 (206)
421 PRK07107 inosine 5-monophospha 94.0 0.26 5.5E-06 49.4 8.7 70 134-215 243-313 (502)
422 TIGR01496 DHPS dihydropteroate 94.0 0.43 9.3E-06 43.5 9.5 60 55-121 20-82 (257)
423 TIGR03249 KdgD 5-dehydro-4-deo 93.9 5.3 0.00011 37.1 17.7 151 42-232 71-226 (296)
424 cd04722 TIM_phosphate_binding 93.9 1.8 3.8E-05 36.4 12.8 130 58-216 12-145 (200)
425 COG2876 AroA 3-deoxy-D-arabino 93.9 0.63 1.4E-05 42.4 10.0 115 91-222 134-255 (286)
426 PRK13397 3-deoxy-7-phosphohept 93.9 0.34 7.4E-06 44.0 8.5 97 124-229 21-120 (250)
427 PF02548 Pantoate_transf: Keto 93.9 2.5 5.4E-05 38.6 14.0 132 49-206 18-166 (261)
428 PRK13523 NADPH dehydrogenase N 93.9 0.32 7E-06 46.1 8.7 108 45-184 207-322 (337)
429 KOG2550|consensus 93.8 0.57 1.2E-05 45.2 10.0 69 135-216 253-322 (503)
430 PRK13306 ulaD 3-keto-L-gulonat 93.8 1.6 3.6E-05 38.6 12.6 142 45-222 56-199 (216)
431 cd03332 LMO_FMN L-Lactate 2-mo 93.8 0.92 2E-05 43.8 11.7 43 170-214 238-281 (383)
432 PRK02412 aroD 3-dehydroquinate 93.7 4 8.7E-05 37.1 15.2 96 47-153 17-117 (253)
433 PRK00278 trpC indole-3-glycero 93.6 0.45 9.8E-06 43.5 9.0 91 114-219 49-145 (260)
434 cd04725 OMP_decarboxylase_like 93.6 4.2 9.1E-05 36.0 14.9 142 46-225 50-211 (216)
435 PRK11572 copper homeostasis pr 93.6 2.2 4.8E-05 38.7 13.1 85 52-153 6-94 (248)
436 PRK14057 epimerase; Provisiona 93.6 2.6 5.7E-05 38.4 13.7 141 45-222 75-229 (254)
437 PRK04452 acetyl-CoA decarbonyl 93.6 0.99 2.1E-05 42.5 11.3 117 47-193 49-182 (319)
438 COG5016 Pyruvate/oxaloacetate 93.6 1.6 3.5E-05 42.2 12.6 134 51-211 88-228 (472)
439 cd00740 MeTr MeTr subgroup of 93.6 0.43 9.4E-06 43.4 8.7 72 55-149 23-96 (252)
440 PRK09282 pyruvate carboxylase 93.5 3.6 7.8E-05 42.1 16.1 214 60-307 98-324 (592)
441 PRK07114 keto-hydroxyglutarate 93.5 1.3 2.9E-05 39.5 11.4 117 104-249 7-128 (222)
442 cd00405 PRAI Phosphoribosylant 93.5 2.4 5.2E-05 36.9 13.1 122 50-214 1-127 (203)
443 cd00003 PNPsynthase Pyridoxine 93.5 1 2.3E-05 40.3 10.6 141 59-220 22-217 (234)
444 PLN02493 probable peroxisomal 93.5 0.97 2.1E-05 43.4 11.2 43 170-214 209-252 (367)
445 PRK01060 endonuclease IV; Prov 93.4 0.9 1.9E-05 41.4 10.6 133 60-208 14-168 (281)
446 TIGR03128 RuMP_HxlA 3-hexulose 93.4 3.7 7.9E-05 35.7 14.0 127 48-216 2-135 (206)
447 KOG2550|consensus 93.3 0.17 3.8E-06 48.6 5.6 78 135-217 303-386 (503)
448 TIGR00674 dapA dihydrodipicoli 93.2 6.1 0.00013 36.4 16.0 151 42-232 64-219 (285)
449 cd00452 KDPG_aldolase KDPG and 93.2 0.55 1.2E-05 40.6 8.4 89 116-228 5-94 (190)
450 TIGR01502 B_methylAsp_ase meth 93.2 3.8 8.3E-05 40.0 15.0 151 42-216 161-329 (408)
451 PF02679 ComA: (2R)-phospho-3- 93.2 0.32 6.9E-06 44.0 7.0 106 59-184 85-195 (244)
452 TIGR00559 pdxJ pyridoxine 5'-p 93.2 1.3 2.9E-05 39.7 10.9 140 60-220 23-218 (237)
453 TIGR03151 enACPred_II putative 93.2 1.7 3.6E-05 40.8 12.2 89 98-213 46-135 (307)
454 COG0800 Eda 2-keto-3-deoxy-6-p 93.2 1.5 3.2E-05 38.8 10.9 95 132-249 25-122 (211)
455 PRK14041 oxaloacetate decarbox 93.1 4.6 0.0001 40.1 15.6 218 56-307 92-323 (467)
456 TIGR00683 nanA N-acetylneurami 93.1 7.3 0.00016 36.1 19.7 155 42-233 67-223 (290)
457 PRK08673 3-deoxy-7-phosphohept 93.1 2.7 5.9E-05 39.9 13.4 114 55-207 104-222 (335)
458 TIGR03569 NeuB_NnaB N-acetylne 93.0 6.3 0.00014 37.3 15.8 114 56-193 74-201 (329)
459 KOG4201|consensus 93.0 0.67 1.5E-05 40.9 8.5 76 138-224 199-276 (289)
460 TIGR01108 oadA oxaloacetate de 92.9 5.5 0.00012 40.7 16.3 218 57-307 89-319 (582)
461 KOG3111|consensus 92.9 3.4 7.3E-05 36.0 12.5 131 47-214 6-141 (224)
462 TIGR02708 L_lactate_ox L-lacta 92.9 0.71 1.5E-05 44.3 9.4 52 170-223 213-269 (367)
463 cd08205 RuBisCO_IV_RLP Ribulos 92.9 2.4 5.2E-05 40.8 13.0 97 44-154 128-232 (367)
464 PRK12330 oxaloacetate decarbox 92.8 8.1 0.00018 38.7 16.8 214 61-307 100-327 (499)
465 cd08210 RLP_RrRLP Ribulose bis 92.7 4.7 0.0001 38.8 14.7 119 43-192 123-249 (364)
466 PF00218 IGPS: Indole-3-glycer 92.5 0.55 1.2E-05 42.8 7.8 77 133-222 69-146 (254)
467 PF03932 CutC: CutC family; I 92.5 2.2 4.7E-05 37.5 11.2 136 50-214 3-147 (201)
468 cd07944 DRE_TIM_HOA_like 4-hyd 92.5 8.3 0.00018 35.3 16.1 86 55-152 17-102 (266)
469 PF01070 FMN_dh: FMN-dependent 92.5 1.5 3.2E-05 42.0 11.0 43 170-214 210-253 (356)
470 cd00951 KDGDH 5-dehydro-4-deox 92.5 8.8 0.00019 35.5 20.7 153 42-233 66-222 (289)
471 TIGR02313 HpaI-NOT-DapA 2,4-di 92.5 0.77 1.7E-05 42.7 8.8 85 131-222 20-110 (294)
472 PLN02363 phosphoribosylanthran 92.4 3.3 7.1E-05 37.8 12.6 85 48-155 47-132 (256)
473 PRK12457 2-dehydro-3-deoxyphos 92.3 3.6 7.7E-05 37.9 12.5 123 56-213 96-236 (281)
474 COG0826 Collagenase and relate 92.2 6.7 0.00014 37.5 15.0 80 65-152 20-99 (347)
475 TIGR01740 pyrF orotidine 5'-ph 92.1 6.1 0.00013 34.8 13.8 142 47-227 51-209 (213)
476 COG4981 Enoyl reductase domain 92.1 1.2 2.5E-05 44.5 9.7 107 104-221 112-260 (717)
477 cd02933 OYE_like_FMN Old yello 92.1 0.79 1.7E-05 43.5 8.5 102 47-184 220-331 (338)
478 PLN02417 dihydrodipicolinate s 92.0 0.83 1.8E-05 42.1 8.5 84 131-221 21-110 (280)
479 PRK07455 keto-hydroxyglutarate 92.0 2 4.4E-05 37.2 10.4 88 104-215 4-92 (187)
480 COG0329 DapA Dihydrodipicolina 92.0 0.89 1.9E-05 42.4 8.7 85 131-222 24-114 (299)
481 TIGR00433 bioB biotin syntheta 91.8 9.4 0.0002 35.0 15.4 140 64-214 126-273 (296)
482 cd04743 NPD_PKS 2-Nitropropane 91.8 2.7 5.8E-05 39.7 11.6 91 97-213 37-129 (320)
483 TIGR01362 KDO8P_synth 3-deoxy- 91.8 0.72 1.6E-05 41.9 7.5 96 124-228 8-113 (258)
484 TIGR03586 PseI pseudaminic aci 91.8 7.7 0.00017 36.7 14.7 113 57-193 76-200 (327)
485 cd03174 DRE_TIM_metallolyase D 91.7 7.7 0.00017 34.8 14.4 78 56-153 17-95 (265)
486 PLN02417 dihydrodipicolinate s 91.7 3.5 7.6E-05 38.0 12.2 85 55-154 19-105 (280)
487 PRK13958 N-(5'-phosphoribosyl) 91.6 9 0.00019 33.7 15.2 100 50-190 3-103 (207)
488 PF04309 G3P_antiterm: Glycero 91.6 0.3 6.5E-06 41.9 4.6 67 134-218 106-173 (175)
489 KOG0538|consensus 91.4 1.3 2.8E-05 41.3 8.7 51 170-222 208-263 (363)
490 cd04730 NPD_like 2-Nitropropan 91.4 4.8 0.0001 35.6 12.5 91 98-213 37-128 (236)
491 PRK10550 tRNA-dihydrouridine s 91.4 2.4 5.2E-05 39.8 10.9 94 43-155 131-226 (312)
492 PRK05286 dihydroorotate dehydr 91.4 5.4 0.00012 37.9 13.4 162 45-216 59-247 (344)
493 PRK08444 hypothetical protein; 91.3 3.1 6.7E-05 39.8 11.7 127 55-206 80-225 (353)
494 COG0135 TrpF Phosphoribosylant 91.3 4.6 0.0001 35.7 11.9 123 50-215 4-130 (208)
495 TIGR02127 pyrF_sub2 orotidine 91.2 7.8 0.00017 35.5 13.7 143 45-222 86-252 (261)
496 PRK14042 pyruvate carboxylase 91.1 16 0.00034 37.5 17.1 270 4-307 24-324 (596)
497 PF01729 QRPTase_C: Quinolinat 91.1 2.3 5E-05 36.3 9.6 94 102-222 66-163 (169)
498 TIGR01037 pyrD_sub1_fam dihydr 91.0 8.7 0.00019 35.5 14.2 151 53-214 21-189 (300)
499 PRK13753 dihydropteroate synth 91.0 1.7 3.7E-05 40.1 9.2 59 56-122 23-84 (279)
500 cd00952 CHBPH_aldolase Trans-o 91.0 1.2 2.6E-05 41.7 8.4 84 131-221 28-117 (309)
No 1
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1e-74 Score=539.79 Aligned_cols=305 Identities=50% Similarity=0.874 Sum_probs=282.8
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~ 79 (311)
+|+||+|||.+||+||+.+++||||+++++++ ++..+++.+++.+.|+++||+|+||+.|++||++++++|||+|||||
T Consensus 9 ~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~ 88 (318)
T TIGR00742 9 LDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNV 88 (318)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 58999999999999996589999999999998 65557888899999999999999999999999999999999999999
Q ss_pred CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 159 (311)
Q Consensus 80 gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~ 159 (311)
|||+++++++++|++||++|+++.+|++++++++++|||||+|+||++.++++.+.++++.++++|+++|+|||||++.+
T Consensus 89 GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~q 168 (318)
T TIGR00742 89 GCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLS 168 (318)
T ss_pred CCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhc
Confidence 99999999999999999999999999999999999999999999998876666788999999999999999999998789
Q ss_pred cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhhccCCCCCC
Q psy2386 160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239 (311)
Q Consensus 160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~ 239 (311)
||+|+.+++.++++|+.|+++++.++++|||+||||+|++|+.+++..|||||||||++.|||+|.++.+.+.++. .+
T Consensus 169 g~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMigRgal~nP~if~~~~~~l~~~~--~~ 246 (318)
T TIGR00742 169 GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDREIFNET--DE 246 (318)
T ss_pred CCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEECHHHHhCCHHHHHHHHHhcCCC--CC
Confidence 9999988889999999999999988689999999999999999999889999999999999999999998877542 25
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhhC
Q psy2386 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN 309 (311)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~~ 309 (311)
++++.++++.+++|++++.+++ ..+..+|||+.||++|+|++++||+++++..+...+..++|+++++
T Consensus 247 ~~~~~e~~~~~~~~~~~~~~~~--~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
T TIGR00742 247 ILTRKEIVEQMLPYIEEYLSQG--LSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLETALE 314 (318)
T ss_pred CCCHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHHHHHH
Confidence 6889999999999999877653 5789999999999999999999999999999887788999998875
No 2
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=2.3e-70 Score=514.99 Aligned_cols=305 Identities=52% Similarity=0.918 Sum_probs=282.5
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~ 79 (311)
.|+||+|||.+|+++|+++++||||+++++++ +++.+++.+++.++|+++||+|+||+.|++||++++++|||+|||||
T Consensus 19 ~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~ 98 (333)
T PRK11815 19 MDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNV 98 (333)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 58999999999999996689999999999999 55667888899999999999999999999999999999999999999
Q ss_pred CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 159 (311)
Q Consensus 80 gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~ 159 (311)
|||+++++++++|++|++||+++.+|++++++++++||+||+|+|+++.++.+++.++++.++++|+++|+||+|+.+.+
T Consensus 99 gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~ 178 (333)
T PRK11815 99 GCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLK 178 (333)
T ss_pred CCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhc
Confidence 99999999999999999999999999999999999999999999998866556788999999999999999999998889
Q ss_pred cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhhccCCCCCC
Q psy2386 160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239 (311)
Q Consensus 160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~ 239 (311)
|++|+.+++.++++|++++++++.++++|||+||||.|++|+.++++.|||||||||++.|||+|+++.+.+++... +
T Consensus 179 g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~--~ 256 (333)
T PRK11815 179 GLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPA--P 256 (333)
T ss_pred CCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEEcHHHHhCCHHHHHHHHHhcCCCC--C
Confidence 99998889999999999999999866899999999999999999998899999999999999999999887775432 4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhhC
Q psy2386 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN 309 (311)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~~ 309 (311)
++++.+++..+++|++.+.++| ..+..+|||+.||++|+||+++||+.+++..++....+++|++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 324 (333)
T PRK11815 257 PLSRSEVLEAMLPYIERHLAQG--GRLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGIEVLEEALA 324 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCHHHHHHHHH
Confidence 5789999999999999988866 3689999999999999999999999999999987777799988764
No 3
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-70 Score=510.61 Aligned_cols=293 Identities=31% Similarity=0.506 Sum_probs=262.2
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCc--hhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNK--KHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~--~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi 77 (311)
+|+||.|||++|+++|+.+++|||||++++++ ++. ...+...+.+.|+++||+|++|+.+++||+++++.|+|+|||
T Consensus 19 ~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~Idl 98 (323)
T COG0042 19 AGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAAKIAEELGADIIDL 98 (323)
T ss_pred CCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEee
Confidence 58999999999999994489999999999999 543 334444566999999999999999999999999999999999
Q ss_pred ccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA 156 (311)
Q Consensus 78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~ 156 (311)
|||||+++++++|+||+||++|+++.+||++++++++ +|||||+|+||++.+. ...++++.++++|+++|||||||+
T Consensus 99 N~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~--~~~~ia~~~~~~g~~~ltVHgRtr 176 (323)
T COG0042 99 NCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI--LALEIARILEDAGADALTVHGRTR 176 (323)
T ss_pred eCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc--cHHHHHHHHHhcCCCEEEEecccH
Confidence 9999999999999999999999999999999999995 9999999999998763 257899999999999999999998
Q ss_pred ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386 157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSN 234 (311)
Q Consensus 157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~ 234 (311)
.++|+ +++||++|+++++.++++|||+||||.|++|+.++++. |||||||||+++|||+|+++ +.+.++
T Consensus 177 -~~~y~-------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i-~~~~~g 247 (323)
T COG0042 177 -AQGYL-------GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI-DYLETG 247 (323)
T ss_pred -HhcCC-------CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH-HHhhcC
Confidence 34443 45899999999999955999999999999999999987 99999999999999999999 555554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386 235 LPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL 308 (311)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~ 308 (311)
.. .++++.++++.+.+|++.+.+ +| ...+..+|||+.||++|+|++++||+.+++..+.. ++.+.|++++
T Consensus 248 ~~--~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~~~~~~-~~~~~l~~~~ 318 (323)
T COG0042 248 EL--LPPTLAEVLDILREHLELLLEYYG-KKGLRRLRKHLGYYLKGLPGARELRRALNKAEDGA-EVRRALEAVF 318 (323)
T ss_pred CC--CCCCHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCccHHHHHHHHhccCcHH-HHHHHHHHHH
Confidence 43 348899999999999999998 65 35789999999999999999999999999999998 7777777654
No 4
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=8.5e-68 Score=492.47 Aligned_cols=287 Identities=22% Similarity=0.287 Sum_probs=253.1
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC-ch----hccc---cCCCCCCeEEEecCCCHHHHHHHHHHHHHcC
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN-KK----HCLD---FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG 71 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~-~~----~~l~---~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g 71 (311)
.|+||+|||++|+++|+++++||||||++++. ++ .. ..+. +++.++|+++||+|++|+.|++||+++++.|
T Consensus 9 ag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g 88 (312)
T PRK10550 9 EGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENAARAVELG 88 (312)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHHHHHHHcC
Confidence 38999999999999995599999999999887 42 22 2233 5778999999999999999999999999999
Q ss_pred CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE
Q psy2386 72 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF 149 (311)
Q Consensus 72 ~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i 149 (311)
||+||||||||++++.+.|+|++|+++|+++.+|++++++++ ++|||||+|+||++.+ +..++++.++++|+++|
T Consensus 89 ~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~---~~~~~a~~l~~~Gvd~i 165 (312)
T PRK10550 89 SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGE---RKFEIADAVQQAGATEL 165 (312)
T ss_pred CCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCch---HHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999999988 4999999999997644 35799999999999999
Q ss_pred EEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHh
Q psy2386 150 IVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 150 tvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~ 227 (311)
+||+||. .++|+|+ ++||+.++++++.+ ++|||+||||.|++|+.++++. ||+||||||+++|||+|+++
T Consensus 166 ~Vh~Rt~-~~~y~g~------~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 166 VVHGRTK-EDGYRAE------HINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred EECCCCC-ccCCCCC------cccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHh
Confidence 9999997 4566543 35999999999998 8999999999999999999965 99999999999999999998
Q ss_pred HhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHH
Q psy2386 228 DLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLN 306 (311)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~ 306 (311)
+. +. +++++.|+++.+.+|++...+ +++...+..||||+.||++|+|++++||++++++++.. +..++|++
T Consensus 238 ~~---g~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~~~~~-e~~~~~~~ 309 (312)
T PRK10550 238 KY---NE----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYDEATELFQEIRALNNSP-DIARAIQA 309 (312)
T ss_pred hc---CC----CCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHH-HHHHHHHh
Confidence 64 22 357899999999999876555 44323578899999999999999999999999999999 88888875
No 5
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=2.4e-67 Score=492.24 Aligned_cols=294 Identities=18% Similarity=0.308 Sum_probs=263.6
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-C-C-chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G-N-KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~-~-~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi 77 (311)
.|+||+|||++|+++|+ +++||||++++++. . + +...+...+.+.|+++||+|++|+.|++||+++++.|+|+|||
T Consensus 18 ~g~td~~fR~l~~~~g~-~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~Idl 96 (321)
T PRK10415 18 AGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDI 96 (321)
T ss_pred CCCCcHHHHHHHHHHCC-CEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 48999999999999995 89999999999876 3 2 3334445667789999999999999999999999899999999
Q ss_pred ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157 (311)
Q Consensus 78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~ 157 (311)
|||||++++.+.|+|++|++||+++.+|++++++++++||+||+|.||++... +..++++.++++|+++|+||+||.
T Consensus 97 N~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~--~~~~~a~~le~~G~d~i~vh~rt~- 173 (321)
T PRK10415 97 NMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHR--NCVEIAQLAEDCGIQALTIHGRTR- 173 (321)
T ss_pred eCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcc--hHHHHHHHHHHhCCCEEEEecCcc-
Confidence 99999999999999999999999999999999999999999999999987542 468999999999999999999985
Q ss_pred cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386 158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL 235 (311)
Q Consensus 158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~ 235 (311)
.+.++ ++++|+.++++++.+ ++|||+||||.|++|+.++++. ||+||+|||+++|||+|+++.+++..+.
T Consensus 174 ~~~~~-------G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~ 245 (321)
T PRK10415 174 ACLFN-------GEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245 (321)
T ss_pred ccccC-------CCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCC
Confidence 33443 447999999999998 8999999999999999999974 9999999999999999999988765433
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386 236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL 308 (311)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~ 308 (311)
. .+++++.++++.+++|++.+.+ +|+...+..+|||+.||++|+|++++||+.++++++.. ++.++|++++
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~ 317 (321)
T PRK10415 246 L-LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS-EQLEALEAYF 317 (321)
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCchHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 3 3568899999999999999888 77655789999999999999999999999999999999 9999999876
No 6
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=1.1e-68 Score=498.99 Aligned_cols=293 Identities=28% Similarity=0.470 Sum_probs=231.7
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi 77 (311)
.|+||+|||.+|+++|+.+++|||||++++++ ++ ..+++.+.+.++|+++||+|+||+.+++||+++.+.|+|+|||
T Consensus 6 ~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDl 85 (309)
T PF01207_consen 6 AGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDL 85 (309)
T ss_dssp TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEE
T ss_pred CCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEec
Confidence 58999999999999997569999999999998 43 4568888898999999999999999999999999999999999
Q ss_pred ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157 (311)
Q Consensus 78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~ 157 (311)
|||||+++++++|+|++||++|+++.+|++++++++++|||||+|+||++.. +++.++++.++++|+++||||+||.
T Consensus 86 N~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~--~~~~~~~~~l~~~G~~~i~vH~Rt~- 162 (309)
T PF01207_consen 86 NMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSP--EETIEFARILEDAGVSAITVHGRTR- 162 (309)
T ss_dssp EE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--C--HHHHHHHHHHHHTT--EEEEECS-T-
T ss_pred cCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccch--hHHHHHHHHhhhcccceEEEecCch-
Confidence 9999999999999999999999999999999999999999999999999543 3689999999999999999999996
Q ss_pred cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386 158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL 235 (311)
Q Consensus 158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~ 235 (311)
.+++.+++||+.|+++++.+ ++|||+||||+|++|+.++++. |||||||||++.|||+|++......+..
T Consensus 163 -------~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~ 234 (309)
T PF01207_consen 163 -------KQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEP 234 (309)
T ss_dssp -------TCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT
T ss_pred -------hhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCC
Confidence 44556679999999999999 6999999999999999999986 9999999999999999996322222322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHh
Q psy2386 236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNT 307 (311)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~ 307 (311)
. +.++..+.+..+.+|++...+ +|+...+..++||+.||++++++++.||+.++++++.. +..++|++.
T Consensus 235 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~~~~~-e~~~~l~~~ 304 (309)
T PF01207_consen 235 E--PFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKGFPGARKFRRELNKCKTLE-EFLELLEEA 304 (309)
T ss_dssp ----S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH-SHH-HHHHHH---
T ss_pred C--CCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHccCCcHHHHHHHHHhhCCHH-HHhhhhccc
Confidence 2 234467888888888887777 55436789999999999999999999999999999999 889999843
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.8e-61 Score=453.26 Aligned_cols=295 Identities=24% Similarity=0.391 Sum_probs=264.6
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi 77 (311)
+|+||++||.+|+++| ++++||||++++++. .. ..+++.+++.+.|+++||+|++|++|++||++++++|||+|||
T Consensus 16 ~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~Iel 94 (319)
T TIGR00737 16 AGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDI 94 (319)
T ss_pred CCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999 599999999999998 42 3457778889999999999999999999999999999999999
Q ss_pred ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157 (311)
Q Consensus 78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~ 157 (311)
|+|||++++++.++|++|+++|+++.+|++++++++++||+||+|.||++... ++.++++.++++|+++|+||+|+.
T Consensus 95 N~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~~a~~l~~~G~d~i~vh~r~~- 171 (319)
T TIGR00737 95 NMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVEAARIAEDAGAQAVTLHGRTR- 171 (319)
T ss_pred ECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHHHHHHHHHhCCCEEEEEcccc-
Confidence 99999998888889999999999999999999999999999999999976542 467999999999999999999986
Q ss_pred cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386 158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL 235 (311)
Q Consensus 158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~ 235 (311)
.++++ ++++|++++++++.+ ++||++||||.|++|+.++++. ||+||+|||++.|||+|+++.+.+..+.
T Consensus 172 ~~~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~ 243 (319)
T TIGR00737 172 AQGYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGK 243 (319)
T ss_pred cccCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCC
Confidence 44544 347999999999998 7999999999999999999954 9999999999999999999988765433
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhhC
Q psy2386 236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN 309 (311)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~~ 309 (311)
. .+++++.|.+..+.+|++...+ +|+...+..+|||+.+|++++|++++||+.|+++++.. +..++|++++.
T Consensus 244 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~ 316 (319)
T TIGR00737 244 Y-KPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKGFPGNAALRQTLNHASSFQ-EVKQLLDDFFE 316 (319)
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHH-HHHHHHHHHHh
Confidence 2 2467889999999999998877 77545689999999999999999999999999999999 89999998764
No 8
>KOG2335|consensus
Probab=100.00 E-value=6.7e-60 Score=432.89 Aligned_cols=283 Identities=26% Similarity=0.450 Sum_probs=243.3
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi 77 (311)
||+|++|||+|||+|| ++++||||+.|+.++ +. ....+.++++|+|+|||++|+||+.|.+||+++++++ |+|||
T Consensus 27 vd~S~l~fR~L~R~y~-~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idl 104 (358)
T KOG2335|consen 27 VDYSELAFRRLVRLYG-ADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC-DGIDL 104 (358)
T ss_pred ccccHHHHHHHHHHhC-CceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-Ccccc
Confidence 7999999999999999 599999999999998 42 3457788999999999999999999999999999995 99999
Q ss_pred ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157 (311)
Q Consensus 78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~ 157 (311)
|||||+..+.++|||++||.+|+++.+||+++++.++.|||+|||++.|.. .++++++.++++|++.+||||||++
T Consensus 105 NcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~----kTvd~ak~~e~aG~~~ltVHGRtr~ 180 (358)
T KOG2335|consen 105 NCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE----KTVDYAKMLEDAGVSLLTVHGRTRE 180 (358)
T ss_pred cCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH----HHHHHHHHHHhCCCcEEEEecccHH
Confidence 999999999999999999999999999999999999999999999986654 4689999999999999999999997
Q ss_pred cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386 158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL 235 (311)
Q Consensus 158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~ 235 (311)
+.|. ..+|+||+.|+.+++.+|+|||++||||.|++|+.++++. |||||+|||+|.|||+|... +
T Consensus 181 ~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~-----~-- 247 (358)
T KOG2335|consen 181 QKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTA-----G-- 247 (358)
T ss_pred hcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccC-----C--
Confidence 6663 3567999999999999977999999999999999999985 99999999999999999551 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcH-HHHHHHhCCCCCCCChHHHHH-HhhC
Q psy2386 236 PQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSN-KFKQILSKPNLLTIDNFQFFL-NTLN 309 (311)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~-~~r~~l~~~~~~~~~~~~~l~-~~~~ 309 (311)
..++..++...++++..++ .|. .....++.|+...++.+-.-. .+|+.++...+.. .+.++++ ..+.
T Consensus 248 ---~~~~~~~~~~~~l~~~~e~--~g~-~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~-~~~~~l~~~~~~ 316 (358)
T KOG2335|consen 248 ---YGPTPWGCVEEYLDIAREF--GGL-SSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCE-SVIDFLEELVLM 316 (358)
T ss_pred ---CCCCHHHHHHHHHHHHHHc--CCC-chhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchh-hHHHHHHHHHHH
Confidence 2355667787766665543 332 135677888888776544444 4789999998888 8999998 4433
No 9
>KOG2333|consensus
Probab=100.00 E-value=7.1e-49 Score=367.95 Aligned_cols=260 Identities=22% Similarity=0.356 Sum_probs=220.7
Q ss_pred CCCHHHHHHHHHhCCCcEEEecceeccccc-C--CchhccccCCCCCCeEEEecCCCHHHHHHHHHHHH-HcCCCEEEec
Q psy2386 3 LTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G--NKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ-KWGYDEINLN 78 (311)
Q Consensus 3 ~td~~fR~l~~~~g~~~l~~temv~a~~l~-~--~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~-~~g~d~IdiN 78 (311)
+.++|||+||+.||+ +++|.||--+-.|+ | ..+.+++.|..|.-++|||.|+.|+.+++||+++. ...+|+||||
T Consensus 275 vGNLPFRRlCk~lGA-DvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN 353 (614)
T KOG2333|consen 275 VGNLPFRRLCKKLGA-DVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLN 353 (614)
T ss_pred cCCccHHHHHHHhCC-ccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHHhhcceeeeecc
Confidence 679999999999995 99999999999999 6 35678999999999999999999999999999775 5678999999
Q ss_pred cCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHH-HcCCCEEEEecCcc
Q psy2386 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNA 156 (311)
Q Consensus 79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~-~~G~~~itvh~Rt~ 156 (311)
||||..-+.+.|.|++||++|..+.++++++...++ +|+|||||.|..++... ..+++..+. +.|+++||+|||.+
T Consensus 354 ~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~--a~~Li~~i~newg~savTlHGRSR 431 (614)
T KOG2333|consen 354 MGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPV--AHELIPRIVNEWGASAVTLHGRSR 431 (614)
T ss_pred CCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchh--HHHHHHHHhhccCcceEEecCchh
Confidence 999999999999999999999999999999998885 59999999998887653 567788888 99999999999986
Q ss_pred ccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh---cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386 157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY---IDGVMLGREAYKNPFLMSNFDLNYY 232 (311)
Q Consensus 157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~---adgVmigRa~l~~P~i~~~~~~~~~ 232 (311)
++||++.+||++|.++++.+.. +|+|+||||.|++|..+.+.. +|+||||||++-.||||.+|++..+
T Consensus 432 --------qQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~ 503 (614)
T KOG2333|consen 432 --------QQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQH 503 (614)
T ss_pred --------hhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhc
Confidence 7888999999999999988744 999999999999998888764 9999999999999999999998755
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHh
Q psy2386 233 SNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLM 277 (311)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~ 277 (311)
..- ++-.+.++++.|.+|-.+++..++ ..+...|+|++-|+
T Consensus 504 wD~---sSteRldiL~df~nyGLeHWGSDt-~GVetTRRFlLE~l 544 (614)
T KOG2333|consen 504 WDI---SSTERLDILKDFCNYGLEHWGSDT-KGVETTRRFLLEFL 544 (614)
T ss_pred CCc---cchHHHHHHHHHHhhhhhhcCCcc-ccHHHHHHHHHHHH
Confidence 421 233344444454555545544322 46888888877664
No 10
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=3.4e-48 Score=347.06 Aligned_cols=216 Identities=34% Similarity=0.595 Sum_probs=196.5
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCc--hhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNK--KHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~--~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi 77 (311)
+|+||++||++|++|| ++++||||++++.++ .++ ..++..++.+.|+++||+|++|++|+++|++++++|||+|||
T Consensus 8 ~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~iel 86 (231)
T cd02801 8 VGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDL 86 (231)
T ss_pred CCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999 699999999999998 433 356667888999999999999999999999999999999999
Q ss_pred ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157 (311)
Q Consensus 78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~ 157 (311)
|+|||++++++++||+.++++++++.++++++++.+++||+||+|.+|+.. +++.++++.+++.|+++|++|+|+..
T Consensus 87 n~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~~~~~l~~~Gvd~i~v~~~~~~ 163 (231)
T cd02801 87 NMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLELAKALEDAGASALTVHGRTRE 163 (231)
T ss_pred eCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHHHHHHHHHhCCCEEEECCCCHH
Confidence 999999999999999999999999999999999999999999999999764 24689999999999999999999852
Q ss_pred cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
++ +.++.+|+.++++++.+ ++||++||||.|++|+.++++. ||+||+||+++.|||+++++.+
T Consensus 164 -~~-------~~~~~~~~~~~~i~~~~-~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 164 -QR-------YSGPADWDYIAEIKEAV-SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred -Hc-------CCCCCCHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhh
Confidence 22 23457999999999987 8999999999999999999975 9999999999999999999865
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=7.1e-42 Score=306.53 Aligned_cols=202 Identities=18% Similarity=0.234 Sum_probs=166.4
Q ss_pred CCCCHHHHH-HHHHhCCCcEE------Eecceeccccc-C-Cc------------hhccccCCCCCCeEEEecCCCHHHH
Q psy2386 2 NLTDRHCRM-FHRQITRYSWL------YTEMFTTQAIL-G-NK------------KHCLDFNAEEHPIAFQVGDNEPKKL 60 (311)
Q Consensus 2 ~~td~~fR~-l~~~~g~~~l~------~temv~a~~l~-~-~~------------~~~l~~~~~~~p~~~Ql~g~~~~~~ 60 (311)
|+||.+||. +|..+|. ++. +|+|..++.+. . .+ ..+-.....+.|+++||+|++|+.+
T Consensus 9 g~td~~f~~~~~~~~g~-~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~ 87 (233)
T cd02911 9 GITDGDFCRKRADHAGL-VFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSSSLEPL 87 (233)
T ss_pred CCcCHHHHHhhCccCCE-EEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEecCCCHHHH
Confidence 899999999 7777773 444 44444444443 1 11 0011113345799999999999999
Q ss_pred HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140 (311)
Q Consensus 61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~ 140 (311)
.++|+.+++. +|+||||||||++++++.|+|++|++||+++.+|++++++ .++||+||+|+||+ . +..++++.
T Consensus 88 ~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~----~~~~la~~ 160 (233)
T cd02911 88 LNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-V----DDEELARL 160 (233)
T ss_pred HHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-c----CHHHHHHH
Confidence 9999999885 5999999999999999999999999999999999999998 59999999999997 3 25789999
Q ss_pred HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 141 l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
++++|+|.|+++.+. .| ..+||+.|++++ . ++|||+||||.|++|+.++++. ||+||+||+ .
T Consensus 161 l~~aG~d~ihv~~~~---~g---------~~ad~~~I~~i~--~-~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~ 223 (233)
T cd02911 161 IEKAGADIIHVDAMD---PG---------NHADLKKIRDIS--T-ELFIIGNNSVTTIESAKEMFSYGADMVSVARA--S 223 (233)
T ss_pred HHHhCCCEEEECcCC---CC---------CCCcHHHHHHhc--C-CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--C
Confidence 999999987665442 22 247999999997 5 7999999999999999999987 999999999 9
Q ss_pred CCcchHHhH
Q psy2386 220 NPFLMSNFD 228 (311)
Q Consensus 220 ~P~i~~~~~ 228 (311)
|||+|++++
T Consensus 224 ~p~~~~~~~ 232 (233)
T cd02911 224 LPENIEWLV 232 (233)
T ss_pred CchHHHHhh
Confidence 999999875
No 12
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=1e-37 Score=277.46 Aligned_cols=161 Identities=19% Similarity=0.152 Sum_probs=145.3
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
...|+++|+.+++|+++.++++.+.+ ++|+||||||||++++++.|+|++|++||+++.++++++++ .++||+||+|+
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~ 143 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRG 143 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCC
Confidence 46799999999999999999999988 69999999999999999999999999999999999999995 58999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
++++. +..++++.++++|+++|+||.+.. | . +.++|+.|+++++.++++|||+||||+|++|+.+
T Consensus 144 ~~~~~----~~~~~a~~l~~aGad~i~Vd~~~~---g---~-----~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e 208 (231)
T TIGR00736 144 NCIPL----DELIDALNLVDDGFDGIHVDAMYP---G---K-----PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKE 208 (231)
T ss_pred CCCcc----hHHHHHHHHHHcCCCEEEEeeCCC---C---C-----chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHH
Confidence 98653 357999999999999999997642 2 1 2379999999999983499999999999999999
Q ss_pred HHhh-cCEEEEehhhhhCC
Q psy2386 204 HLNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 204 ~l~~-adgVmigRa~l~~P 221 (311)
+++. ||+||+|||++.+-
T Consensus 209 ~l~~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 209 MLKAGADFVSVARAILKGN 227 (231)
T ss_pred HHHhCCCeEEEcHhhccCC
Confidence 9987 99999999998763
No 13
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=3.4e-36 Score=280.02 Aligned_cols=214 Identities=19% Similarity=0.215 Sum_probs=175.5
Q ss_pred CCCCHHHHHHHHHhCCCcEEEe---------------------cceecccccC-Cch---hcccc--CCCCCCeEEEecC
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYT---------------------EMFTTQAILG-NKK---HCLDF--NAEEHPIAFQVGD 54 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~t---------------------emv~a~~l~~-~~~---~~l~~--~~~~~p~~~Ql~g 54 (311)
|+|+.++|.+++. | .++++| +|+++.++.+ ... +.+.. ++.+.|+++||+|
T Consensus 22 ~~~~~~~~~~~~~-G-~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~g 99 (300)
T TIGR01037 22 GSGVESLRRIDRS-G-AGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVYG 99 (300)
T ss_pred CCCHHHHHHHHHc-C-CcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEeec
Confidence 7899999999987 7 488999 8888888872 222 22221 3345699999999
Q ss_pred CCHHHHHHHHHHHHHcC--CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g--~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~ 132 (311)
++++++.++|+.+++++ +|+||||+|||+.+ ++|+.++++|+++.+|++++++.+++||+||++.+.+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~------ 169 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT------ 169 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh------
Confidence 99999999999999863 89999999999975 5899999999999999999999999999999996432
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccc---------------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~---------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
+..++++.++++|+|+|++|+++.. .+|++|+. ..+..++.++++++.+ ++|||+||||.|
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~---~~~~~l~~v~~i~~~~-~ipvi~~GGI~s 245 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPA---IKPIALRMVYDVYKMV-DIPIIGVGGITS 245 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchh---hhHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 3578999999999999999865320 12444431 1123458899999998 799999999999
Q ss_pred HHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
++|+.+++.. ||+||+||+++.+||+|+++.+.+
T Consensus 246 ~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 246 FEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred HHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHH
Confidence 9999999976 999999999999999998887543
No 14
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=1.5e-35 Score=275.38 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=168.0
Q ss_pred cEEEecceeccccc-C-C-chhccccCCCCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc
Q psy2386 19 SWLYTEMFTTQAIL-G-N-KKHCLDFNAEEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI 94 (311)
Q Consensus 19 ~l~~temv~a~~l~-~-~-~~~~l~~~~~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~ 94 (311)
++.+|||+++.++. . + ..++.+..+ +.|+++|++|+ ++++|.++|+.+++.|+|+||||+|||+. ..++++|+.
T Consensus 71 g~~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~ 148 (299)
T cd02940 71 GFNNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAA 148 (299)
T ss_pred cccCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchh
Confidence 57788999888875 2 1 222233233 78999999998 99999999999999999999999999998 456678999
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE---------------------ec
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV---------------------HA 153 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv---------------------h~ 153 (311)
|+++|+.+.+|++++++.+++||+||+|.+.+ ++.++++.++++|+++|++ |+
T Consensus 149 l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~------~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~ 222 (299)
T cd02940 149 VGQDPELVEEICRWVREAVKIPVIAKLTPNIT------DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEG 222 (299)
T ss_pred hccCHHHHHHHHHHHHHhcCCCeEEECCCCch------hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccC
Confidence 99999999999999999999999999997543 3578999999999999984 45
Q ss_pred CccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386 154 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 230 (311)
Q Consensus 154 Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~ 230 (311)
|+. .+|+||+. ..|..|++|+++++.+. ++|||+||||.|.+|+.+++.. ||+||||||++. +|.++.++.+.
T Consensus 223 ~~~-~gg~sG~a---~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 223 KTT-YGGYSGPA---VKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred CCC-cCcccCCC---cchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhhh
Confidence 554 56777762 23446999999999873 6999999999999999999977 999999999877 99999988753
No 15
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.4e-32 Score=255.14 Aligned_cols=212 Identities=17% Similarity=0.216 Sum_probs=174.8
Q ss_pred CCHHHHHHHHHhCCCcEEEecceeccccc-CC--c-------------------hhcccc-----CCCCCCeEEEecCCC
Q psy2386 4 TDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--K-------------------KHCLDF-----NAEEHPIAFQVGDNE 56 (311)
Q Consensus 4 td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~-------------------~~~l~~-----~~~~~p~~~Ql~g~~ 56 (311)
++..||.++...| .+.++|++++.+... +. + ..+++. +..+.|+++||+|++
T Consensus 22 ~~~~~~~~~~~g~-~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~~ 100 (296)
T cd04740 22 FGEELSRVADLGK-LGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGST 100 (296)
T ss_pred CHHHHHHHHhcCC-ceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecCC
Confidence 6778999998877 489999999977544 21 1 112211 335789999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHH
Q psy2386 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD 136 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e 136 (311)
+++|+++|++++++|+|+||||++||+.+ +.|+.++++|+++.+|++++++.+++||+||++...+ +..+
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~------~~~~ 170 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT------DIVE 170 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch------hHHH
Confidence 99999999999999999999999999975 3488899999999999999999999999999986432 3578
Q ss_pred HHHHHHHcCCCEEEEecCcc---------c------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 137 FVGTVSSAGCRTFIVHARNA---------F------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 137 ~~~~l~~~G~~~itvh~Rt~---------~------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
+++.++++|+|+|+++.++. . ..|++|+ ...+..|++++++++.+ ++|||++|||.|++|+
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~---~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da 246 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGP---AIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDA 246 (296)
T ss_pred HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCc---ccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHH
Confidence 99999999999999864321 0 1345554 22345789999999998 8999999999999999
Q ss_pred HHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386 202 DLHLNY-IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 202 ~~~l~~-adgVmigRa~l~~P~i~~~~~~~ 230 (311)
.+++.. ||+||+||+++.+||+++++.+.
T Consensus 247 ~~~l~~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 247 LEFLMAGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred HHHHHcCCCEEEEchhhhcChHHHHHHHHH
Confidence 999976 99999999999999999988754
No 16
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=100.00 E-value=7e-33 Score=268.92 Aligned_cols=201 Identities=16% Similarity=0.220 Sum_probs=167.1
Q ss_pred cEEEecceeccccc-C-C-chhccccCCCCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc
Q psy2386 19 SWLYTEMFTTQAIL-G-N-KKHCLDFNAEEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI 94 (311)
Q Consensus 19 ~l~~temv~a~~l~-~-~-~~~~l~~~~~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~ 94 (311)
++..+||++++++. . . ..++++.. .+.|+++||+|+ ++++|+++|+.+++.|+|+||||+|||+ ++..++.|++
T Consensus 71 g~~n~~~~s~~~~~~~~~~~~~~~~~~-~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~~g~~ 148 (420)
T PRK08318 71 GFNNIELITDRPLEVNLREIRRVKRDY-PDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSA 148 (420)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhC-CCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccCCccc
Confidence 56778888877775 1 1 12232222 358999999999 9999999999999999999999999999 4556679999
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE---------------------Eec
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI---------------------VHA 153 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it---------------------vh~ 153 (311)
++++|+.+.+|++++++.+++||+||+|...++ +.++++.++++|+|+|+ +|+
T Consensus 149 ~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~------~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~ 222 (420)
T PRK08318 149 VGQVPELVEMYTRWVKRGSRLPVIVKLTPNITD------IREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNG 222 (420)
T ss_pred ccCCHHHHHHHHHHHHhccCCcEEEEcCCCccc------HHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecC
Confidence 999999999999999999999999999974332 57899999999999999 355
Q ss_pred CccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHh
Q psy2386 154 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDL 229 (311)
Q Consensus 154 Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~ 229 (311)
|+. .+||||+ ...|..|++|+++++.+ +++|||+||||.|++|+.+++.. ||+||||||++. +|.++.++.+
T Consensus 223 ~~~-~gg~SG~---a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 223 KSS-HGGYCGP---AVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred CCC-cccccch---hhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHH
Confidence 554 6788887 33455799999999986 26999999999999999999976 999999999977 8999988876
Q ss_pred hh
Q psy2386 230 NY 231 (311)
Q Consensus 230 ~~ 231 (311)
.+
T Consensus 299 ~L 300 (420)
T PRK08318 299 GL 300 (420)
T ss_pred HH
Confidence 54
No 17
>KOG2334|consensus
Probab=99.98 E-value=3e-31 Score=246.47 Aligned_cols=236 Identities=19% Similarity=0.304 Sum_probs=198.6
Q ss_pred CCCCHHHHHHHHHhCCCcEEEecceeccccc-C----Cc-h------------hccccCCC-CCCeEEEecCCCHHHHHH
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G----NK-K------------HCLDFNAE-EHPIAFQVGDNEPKKLAK 62 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~----~~-~------------~~l~~~~~-~~p~~~Ql~g~~~~~~~~ 62 (311)
.+.++|.|.||-+||+ +++|||-|....|+ + +. . ..+..+|. ...++.|++.++++.-.+
T Consensus 20 r~G~lpmrLLal~~Ga-dlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ~gT~sa~lA~e 98 (477)
T KOG2334|consen 20 RAGELPMRLLALQYGA-DLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQIGTASAELALE 98 (477)
T ss_pred HhccchHHHHHHHhcc-ceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEEEecCCcHHHHHH
Confidence 4678999999999995 99999999988776 3 11 0 12222333 456999999999999999
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 142 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~ 142 (311)
+|+++.. .+.+||+|||||-.+.+..|+|++|+.+|+.+..|+.++.+...+||++|||+-.+..+ +.++++++.
T Consensus 99 ~A~lv~n-DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~ed----tL~lv~ri~ 173 (477)
T KOG2334|consen 99 AAKLVDN-DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKED----TLKLVKRIC 173 (477)
T ss_pred HHHHhhc-ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCccc----HHHHHHHHH
Confidence 9998887 48999999999999999999999999999999999999999999999999997655543 579999999
Q ss_pred HcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC---HHHHHHHHhh--cCEEEEehhh
Q psy2386 143 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT---KKEIDLHLNY--IDGVMLGREA 217 (311)
Q Consensus 143 ~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s---~~da~~~l~~--adgVmigRa~ 217 (311)
+.|+.+|+||+||. +.+...|++-++++++.+.++.+|||.||++.+ ..|+....+. +|+|||+|++
T Consensus 174 ~tgi~ai~vh~rt~--------d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A 245 (477)
T KOG2334|consen 174 ATGIAAITVHCRTR--------DERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAA 245 (477)
T ss_pred hcCCceEEEEeecc--------ccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhh
Confidence 99999999999996 455667788999999999986699999999999 5666655544 9999999999
Q ss_pred hhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCC
Q psy2386 218 YKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNK 262 (311)
Q Consensus 218 l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 262 (311)
..||.+|.+ + ..++..+.+..|+++...+.. +|.
T Consensus 246 ~~n~SiF~~-------e----G~~~~~~~~~~fl~~a~~~dn~~~n 280 (477)
T KOG2334|consen 246 ESNPSIFRE-------E----GCLSEKEVIREFLRLAVQYDNHYGN 280 (477)
T ss_pred hcCCceeee-------c----CCchHHHHHHHHHHHHHHHhhcccc
Confidence 999999964 1 256788899999988887766 664
No 18
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.97 E-value=1.5e-30 Score=242.12 Aligned_cols=174 Identities=20% Similarity=0.311 Sum_probs=149.8
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.+.|+++||+|+++++|+++|+.++++| +|+||||++||+.. +.|..+.++++++.++++++++.+++||+||++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4789999999999999999999999999 99999999999853 227889999999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---------------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA---------------FLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 187 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---------------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i 187 (311)
...+ +..++++.++++|+|.|+++.++. ...|++|+ ...+..+++++++++.+ ++
T Consensus 166 ~~~~------~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~---~~~p~~l~~v~~i~~~~-~i 235 (301)
T PRK07259 166 PNVT------DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGP---AIKPIALRMVYQVYQAV-DI 235 (301)
T ss_pred CCch------hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCc---CcccccHHHHHHHHHhC-CC
Confidence 6432 357899999999999999864321 12345554 23456899999999998 89
Q ss_pred eEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 188 EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 188 pvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
|||++|||.|++|+.+++.. ||+||+||+++.+|++++++.+.+
T Consensus 236 pvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 236 PIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 99999999999999999976 999999999999999999887543
No 19
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.97 E-value=5.5e-30 Score=236.96 Aligned_cols=174 Identities=21% Similarity=0.264 Sum_probs=150.0
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
.+.|+++||+|++++++.++|+.+.++|+|+||||++||+.+. |..++++++.+.++++++++.+++||+||++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 4789999999999999999999999999999999999998642 44588999999999999999999999999998
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc---------------cccCCCCcCCCCCcCcHHHHHHHHHhCC-CC
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNLKKDFP-EL 187 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~---------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~i 187 (311)
+++.+ +..++++.++++|+|+|++|+++.. ..|++|. ...+..+++++++++.++ ++
T Consensus 172 ~~~~~----~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~---~~~~~~~~~v~~i~~~~~~~i 244 (289)
T cd02810 172 YFDLE----DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGA---PIRPLALRWVARLAARLQLDI 244 (289)
T ss_pred CCCHH----HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcH---HHHHHHHHHHHHHHHhcCCCC
Confidence 76532 4689999999999999999987531 1233332 122346889999999885 79
Q ss_pred eEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHh
Q psy2386 188 EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDL 229 (311)
Q Consensus 188 pvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~ 229 (311)
|||++|||.|++|+.+++.. ||+||+||+++.| ||+++++.+
T Consensus 245 piia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~~ 288 (289)
T cd02810 245 PIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred CEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHhc
Confidence 99999999999999999987 9999999999999 999999864
No 20
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=3.8e-29 Score=231.85 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=144.8
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHc---CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKW---GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~---g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK 120 (311)
.+.|+++||+|+ ++++.++++.+++. |+|+||||+|||+.. .+..+.++|+.+.+|++++++.+++||+||
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP-----GKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC-----CcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999 99999999988875 699999999999952 223577899999999999999999999999
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHc--CCCEEEE----------ec-Ccc-------ccccCCCCcCCCCCcCcHHHHHHH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSA--GCRTFIV----------HA-RNA-------FLKKLNPKQNRKIPILKYNFVYNL 180 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~--G~~~itv----------h~-Rt~-------~~~G~~g~~~~~~~~~~~~~i~~i 180 (311)
+|++++.. ++.++++.+.++ |+++|++ |. |+. .+.|+||+ ...+..+++|+++
T Consensus 164 l~p~~~~~----~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~---~i~~~al~~v~~~ 236 (294)
T cd04741 164 TPPYTDPA----QFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGA---YLHPLALGNVRTF 236 (294)
T ss_pred eCCCCCHH----HHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCch---hhHHHHHHHHHHH
Confidence 99987542 357888989898 9999994 53 221 12355554 2334456788999
Q ss_pred HHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhhh
Q psy2386 181 KKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 231 (311)
Q Consensus 181 ~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~~ 231 (311)
++.++ ++|||+||||.|.+|+.+++.. ||+||+|||++. +||+|+++.+.+
T Consensus 237 ~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 290 (294)
T cd04741 237 RRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKEL 290 (294)
T ss_pred HHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHH
Confidence 88874 4999999999999999999986 999999999985 999999998765
No 21
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.96 E-value=1.9e-28 Score=231.72 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=173.8
Q ss_pred CCHHHHHHHH-HhCCCcEEEecceeccccc----CC----ch-------hccc-cCCCCCCeEEEec--CC---------
Q psy2386 4 TDRHCRMFHR-QITRYSWLYTEMFTTQAIL----GN----KK-------HCLD-FNAEEHPIAFQVG--DN--------- 55 (311)
Q Consensus 4 td~~fR~l~~-~~g~~~l~~temv~a~~l~----~~----~~-------~~l~-~~~~~~p~~~Ql~--g~--------- 55 (311)
|+...+.+-+ .-|..++++||.+..+.-- +. .+ ++.+ .|..+.++++||+ |.
T Consensus 32 t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~ 111 (343)
T cd04734 32 SERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWL 111 (343)
T ss_pred CHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCC
Confidence 5555555553 2244689999998765321 10 11 1111 2566778899986 10
Q ss_pred ------C---------------------HHHHHHHHHHHHHcCCCEEEecc--C-------CCccccccCcccCcccCCh
Q psy2386 56 ------E---------------------PKKLAKSAKIIQKWGYDEINLNC--G-------CPSNRVQNGFFGAILMTKP 99 (311)
Q Consensus 56 ------~---------------------~~~~~~aa~~~~~~g~d~IdiN~--g-------CP~~~v~~~~~G~~Ll~~~ 99 (311)
+ .++|++||+++.++|||+||||+ | ||..|.++++||++|+++.
T Consensus 112 ~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~ 191 (343)
T cd04734 112 PPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRM 191 (343)
T ss_pred cccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHh
Confidence 0 26799999999999999999999 4 7889999999999999999
Q ss_pred HHHHHHHHHHhccccceeEEEEeccCCCC----CcHHHHHHHHHHHHHcC-CCEEEEecCccccc-c---CCCCcCCCCC
Q psy2386 100 LLVSDCIKAMRDSVEIDITVKHRIGIDDI----NSYDFVRDFVGTVSSAG-CRTFIVHARNAFLK-K---LNPKQNRKIP 170 (311)
Q Consensus 100 ~~~~~iv~~v~~~~~~pvsvKiR~g~~~~----~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~-G---~~g~~~~~~~ 170 (311)
+++.+|+++||++++.+++||+|+++++. .+.++..++++.|+++| +|+|+||+++.... + ..+ ...+.+
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~-~~~~~~ 270 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVP-SMGMPP 270 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccC-CCCCCc
Confidence 99999999999999999999999987653 23457889999999998 89999976542111 0 011 111223
Q ss_pred cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
..+|+.++++++.+ ++||++||||.|++++.++++. ||+||+||+++.|||+++++.+.
T Consensus 271 ~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g 331 (343)
T cd04734 271 GPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREG 331 (343)
T ss_pred chhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcC
Confidence 34689999999998 8999999999999999999985 99999999999999999998753
No 22
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.95 E-value=1e-27 Score=225.45 Aligned_cols=173 Identities=15% Similarity=0.185 Sum_probs=145.6
Q ss_pred CCCCeEEEecCCC-------HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--
Q psy2386 44 EEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-- 114 (311)
Q Consensus 44 ~~~p~~~Ql~g~~-------~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-- 114 (311)
.+.|+++||+|++ .++|+++++.+.+. +|+||||++||+.. |...+++|+.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~~~ 199 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERNKL 199 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHhhc
Confidence 4789999999997 68899999888774 89999999999863 34458999999999999999886
Q ss_pred ---ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHH
Q psy2386 115 ---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYN 179 (311)
Q Consensus 115 ---~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~ 179 (311)
+||+||++.+++. ++..++++.++++|+|+|++|+|+.. .+|+||+. ..+..|+++++
T Consensus 200 ~~~~Pv~vKl~~~~~~----~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~---~~~~~l~~v~~ 272 (327)
T cd04738 200 GKKVPLLVKIAPDLSD----EELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP---LKERSTEVLRE 272 (327)
T ss_pred ccCCCeEEEeCCCCCH----HHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChh---hhHHHHHHHHH
Confidence 9999999987653 24678999999999999999998631 23566542 22356899999
Q ss_pred HHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386 180 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 230 (311)
Q Consensus 180 i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~ 230 (311)
+++.++ ++||+++|||.|++|+.+++.. ||+|||||+++. +||++.++.+.
T Consensus 273 l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 273 LYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 999874 5999999999999999999976 999999999976 59999998753
No 23
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.95 E-value=2.3e-27 Score=223.46 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC--C
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI--D 126 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~--~ 126 (311)
++|++||++++++|||+||||+| ||..|.+.+.||++|.++.+++.||+++||++++.||+||++... .
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 67999999999999999999999 899999999999999999999999999999999999999999731 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386 127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN 206 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~ 206 (311)
...+.++..++++.++++|+|+|+||+++.. .. +.+.+ +..+|++++++++.+ ++||+++|+|.|++++.++++
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~-~~---~~~~~-~~~~~~~~~~ik~~~-~ipVi~~G~i~~~~~a~~~l~ 295 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVV-PA---RIDVY-PGYQVPFAEHIREHA-NIATGAVGLITSGAQAEEILQ 295 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CC---CCCCC-ccccHHHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHH
Confidence 1223567889999999999999999998631 10 01111 223788999999998 899999999999999999998
Q ss_pred h--cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 207 Y--IDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 207 ~--adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
. ||+|++||+++.||++++++.+.+..
T Consensus 296 ~g~~D~V~~gR~~iadP~~~~k~~~~~~~ 324 (337)
T PRK13523 296 NNRADLIFIGRELLRNPYFPRIAAKELGF 324 (337)
T ss_pred cCCCChHHhhHHHHhCccHHHHHHHHcCC
Confidence 5 99999999999999999999887654
No 24
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.95 E-value=2e-27 Score=224.88 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=146.6
Q ss_pred CCCCeEEEecCC-------CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--
Q psy2386 44 EEHPIAFQVGDN-------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-- 114 (311)
Q Consensus 44 ~~~p~~~Ql~g~-------~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-- 114 (311)
.+.|+++||+|+ ..++|++.++.+.+ ++|+||||++||+.+ |...+++++.+.+|+++|++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~ 208 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAEL 208 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhcc
Confidence 468999999987 57899999998877 599999999999875 34458999999999999999987
Q ss_pred ---ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHH
Q psy2386 115 ---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYN 179 (311)
Q Consensus 115 ---~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~ 179 (311)
+||+||++.+++.+ ++.++++.++++|+|+|++|+|+.. .+|+||+. ..+..|+++++
T Consensus 209 ~~~~PV~vKlsp~~~~~----~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~---~~~~~l~~v~~ 281 (344)
T PRK05286 209 HGYVPLLVKIAPDLSDE----ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRP---LFERSTEVIRR 281 (344)
T ss_pred ccCCceEEEeCCCCCHH----HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHH---HHHHHHHHHHH
Confidence 99999999875532 4689999999999999999998631 23555542 23458999999
Q ss_pred HHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhhh
Q psy2386 180 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 231 (311)
Q Consensus 180 i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~~ 231 (311)
+++.++ ++|||++|||.|++|+.+++.. ||+||+||+++. +||+++++.+.+
T Consensus 282 l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 282 LYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence 999874 5999999999999999999976 999999999976 599999987643
No 25
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.94 E-value=2.6e-26 Score=215.66 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=143.1
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.|+++||+|+++++|.++|+.++++|+|+||||++||... .+.+|+.+ ++.+.++++++++.+++||+||++..
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 68999999999999999999999999999999999996422 24455544 57899999999999999999999975
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN 192 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n 192 (311)
.+ +..++++.++++|+|+|++|+|+.. ..|+||+. ..+..+++++++++.+ ++|||++
T Consensus 174 ~~------~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~---~~~~al~~v~~v~~~~-~ipIig~ 243 (325)
T cd04739 174 FS------ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPA---EIRLPLRWIAILSGRV-KASLAAS 243 (325)
T ss_pred cc------CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCcc---chhHHHHHHHHHHccc-CCCEEEE
Confidence 43 2578999999999999999998621 13455542 2345688999999987 8999999
Q ss_pred cCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhhh
Q psy2386 193 GGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY 231 (311)
Q Consensus 193 GgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~~ 231 (311)
|||.|++|+.+++.. ||+||+||+++. +|.++.++.+.+
T Consensus 244 GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 244 GGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred CCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 999999999999976 999999999988 598887776543
No 26
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=2.6e-26 Score=216.95 Aligned_cols=167 Identities=18% Similarity=0.304 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec---
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI--- 123 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~--- 123 (311)
++|++||++++++|||+||||+|| |..|.+++.||++|+++++++.+|+++||+++ +.||.+|++.
T Consensus 149 ~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~ 228 (338)
T cd04733 149 DRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADF 228 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHc
Confidence 679999999999999999999997 99999999999999999999999999999998 4799999973
Q ss_pred ---cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCC--CCcCC-CCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 124 ---GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN--PKQNR-KIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 124 ---g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~--g~~~~-~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
||+ .++..++++.|++.|+|+|.||+++....... +.... ..+...++.++++++.+ ++||+++|+|.|
T Consensus 229 ~~~g~~----~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t 303 (338)
T cd04733 229 QRGGFT----EEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRT 303 (338)
T ss_pred CCCCCC----HHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCC
Confidence 443 34578999999999999999999873111100 00000 11123468888999998 899999999999
Q ss_pred HHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 198 KKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 198 ~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
++++.++++. ||+|++||+++.|||+++++++
T Consensus 304 ~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~ 337 (338)
T cd04733 304 RAAMEQALASGAVDGIGLARPLALEPDLPNKLLA 337 (338)
T ss_pred HHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhc
Confidence 9999999985 9999999999999999998763
No 27
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.94 E-value=8.8e-26 Score=216.35 Aligned_cols=171 Identities=14% Similarity=0.203 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecc---CC-------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEecc-
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNC---GC-------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG- 124 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~---gC-------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g- 124 (311)
++|++||++++++|||+||||+ || |..|.+.+.||++|+++++++.+|+++||+++ +.||+||++..
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~ 229 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 5799999999999999999998 86 78999999999999999999999999999998 57999999951
Q ss_pred ----CCC-----------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386 125 ----IDD-----------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189 (311)
Q Consensus 125 ----~~~-----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv 189 (311)
++. ..+.++..++++.++++|+|+|+||+++....-++.+.....+...+++++++++.+ ++||
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pv 308 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPV 308 (382)
T ss_pred hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCE
Confidence 111 123457789999999999999999988731110111111111123467889999998 8999
Q ss_pred EEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 190 IINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 190 i~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
+++|+|++++++.++++. ||+|++||+++.|||+++++++
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 999999999999999985 9999999999999999999875
No 28
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.93 E-value=2.7e-25 Score=209.68 Aligned_cols=160 Identities=15% Similarity=0.201 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccCC-
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGID- 126 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~~- 126 (311)
+.|++||++++++|||+||||+|| |..|.+.+.||++|.++.+++.||+++||++++. ||++|++....
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 679999999999999999999999 9999999999999999999999999999999855 89999986311
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 127 ----DINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 127 ----~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
...+.++..++++.|++.|+|+|.| |+++.... +..++++++++++.+ ++||+++|+|. ++++
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~~-~ipvi~~G~i~-~~~a 299 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKAF-KGPLIAAGGYD-AESA 299 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHHc-CCCEEEECCCC-HHHH
Confidence 1224567889999999999999999 56642100 346889999999998 89999999997 9999
Q ss_pred HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
.++++. ||+|++||+++.|||+++++.+
T Consensus 300 ~~~l~~g~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 300 EAALADGKADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred HHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence 999985 9999999999999999999875
No 29
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.93 E-value=1.1e-25 Score=213.78 Aligned_cols=166 Identities=15% Similarity=0.197 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc----ceeEEEEecc
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE----IDITVKHRIG 124 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~----~pvsvKiR~g 124 (311)
++|++||++++++|||+||||++ ||..|.+++.||++|.++.+++.||+++||++++ .++.|++|++
T Consensus 144 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 144 DAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 67999999999999999999986 8999999999999999999999999999999987 6788888887
Q ss_pred CCCC----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHH
Q psy2386 125 IDDI----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKK 199 (311)
Q Consensus 125 ~~~~----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~ 199 (311)
+++. .+.++..++++.+++.|+|+|+||+.+.... ..+.+...++.+..+++.+ +++||++||||+|++
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~------~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e 297 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK------SRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPD 297 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc------cccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHH
Confidence 6542 2345788999999999999999998653111 1112223566677777765 269999999999999
Q ss_pred HHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386 200 EIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 200 da~~~l~~-adgVmigRa~l~~P~i~~~~~~ 229 (311)
++.++++. ||+|++||+++.||++++++.+
T Consensus 298 ~ae~~l~~gaD~V~~gR~liadPdl~~k~~~ 328 (353)
T cd04735 298 DALEALETGADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred HHHHHHHcCCChHHHhHHHHhCccHHHHHHc
Confidence 99999987 9999999999999999999875
No 30
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.93 E-value=4.7e-25 Score=207.36 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID 126 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~ 126 (311)
++|++||++++++|||+||||+| ||..|.+.+.||++++++++++.++++++++.+ ++||.||++....
T Consensus 141 ~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~ 220 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc
Confidence 67999999999999999999998 898899999999999999999999999999998 7899999997532
Q ss_pred C--CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386 127 D--INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 127 ~--~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~ 204 (311)
. ..+.++..++++.+++.|+|+|++|+++..............+..+++.++++++.+ ++||+++|+|.|++++.++
T Consensus 221 ~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 221 VPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHH
Confidence 2 123456789999999999999999988742111000000112345788999999998 8999999999999999999
Q ss_pred Hhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 205 LNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 205 l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
++. ||+|++||+++.||++++++.+
T Consensus 300 l~~g~aD~V~igR~~ladP~l~~k~~~ 326 (327)
T cd02803 300 LAEGKADLVALGRALLADPDLPNKARE 326 (327)
T ss_pred HHCCCCCeeeecHHHHhCccHHHHHhc
Confidence 975 9999999999999999998763
No 31
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.93 E-value=5.2e-25 Score=207.78 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=140.7
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.|+++||+|++++++.++|+.++++|+|+||||++||.... +..|.. .++.+.++++++++.+++||+||++.+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--DISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 589999999999999999999999999999999999976542 223432 356788999999999999999999976
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN 192 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n 192 (311)
++ +..++++.++++|+|+|++|+|+.. ..|+||+ ...+..|++++++++.+ ++|||++
T Consensus 176 ~~------~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~---~~~~~al~~v~~~~~~~-~ipIig~ 245 (334)
T PRK07565 176 FS------NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTP---AELRLPLRWIAILSGRV-GADLAAT 245 (334)
T ss_pred ch------hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCc---hhhhHHHHHHHHHHhhc-CCCEEEE
Confidence 53 2468899999999999999988621 1245544 23344678899999988 8999999
Q ss_pred cCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhh
Q psy2386 193 GGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN 230 (311)
Q Consensus 193 GgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~ 230 (311)
|||+|++|+.+++.. ||+||+||+++.+ |.++.++.+.
T Consensus 246 GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~ 285 (334)
T PRK07565 246 TGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRG 285 (334)
T ss_pred CCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHH
Confidence 999999999999976 9999999999885 8777666544
No 32
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.93 E-value=8e-25 Score=206.71 Aligned_cols=165 Identities=17% Similarity=0.255 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccC-
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGI- 125 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~- 125 (311)
++|++||+++.++|||+||||+|| |..|.+.++||++|+++++++.+|+++||+++ ++||++|++...
T Consensus 154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~ 233 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW 233 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc
Confidence 679999999999999999999987 88999999999999999999999999999999 789999999521
Q ss_pred -CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC-CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 126 -DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI-PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 126 -~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~-~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
....+.++..++++.+++.|+|+|+||.... ++...... +..+++.++++++.+ ++||+++|+|.|++++.+
T Consensus 234 ~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~-----~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 234 VEGGWDLEDSVELAKALKELGVDLIDVSSGGN-----SPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEA 307 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-----CcccccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHH
Confidence 1112245678999999999999999985421 11110111 223568889999998 899999999999999999
Q ss_pred HHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386 204 HLNY--IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 204 ~l~~--adgVmigRa~l~~P~i~~~~~ 228 (311)
+++. ||+||+||+++.||++..++.
T Consensus 308 ~l~~g~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 308 ILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred HHHcCCCCeehhhHHHHhCccHHHHHh
Confidence 9985 999999999999999998765
No 33
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.93 E-value=6.7e-25 Score=209.46 Aligned_cols=169 Identities=14% Similarity=0.151 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 128 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~ 128 (311)
++|++||++++++|||+||||+|| |..|.+.+.||++|+++.+++.||+++||++++.++.|++|++.++.
T Consensus 150 ~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~ 229 (370)
T cd02929 150 RWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDEL 229 (370)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHh
Confidence 679999999999999999999999 99999999999999999999999999999999888888888875431
Q ss_pred ------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 129 ------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 129 ------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
.+.++..++++.+++. +|++.++.......+.. ...+.....|++++++++.+ ++||+++|+|.+++++.
T Consensus 230 ~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~--~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~ 305 (370)
T cd02929 230 IGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGED--SRFYPEGHQEPYIKFVKQVT-SKPVVGVGRFTSPDKMV 305 (370)
T ss_pred cCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccc--cccCCccccHHHHHHHHHHC-CCCEEEeCCCCCHHHHH
Confidence 2355678899999876 79998875431111111 01112234678899999998 89999999999999999
Q ss_pred HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
++++. ||+|++||+++.|||+++++++.
T Consensus 306 ~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 335 (370)
T cd02929 306 EVVKSGILDLIGAARPSIADPFLPKKIREG 335 (370)
T ss_pred HHHHcCCCCeeeechHhhhCchHHHHHHcC
Confidence 99985 99999999999999999999763
No 34
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.92 E-value=1.2e-24 Score=206.30 Aligned_cols=163 Identities=19% Similarity=0.262 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID 126 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~ 126 (311)
++|++||++++++|||+||||++| |..|.++++||++|.++.+++.||+++||+++ +.||.||++. |+
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~ 222 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WK 222 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-cc
Confidence 479999999999999999999999 99999999999999999999999999999998 4899999984 32
Q ss_pred --C-----CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC----
Q psy2386 127 --D-----INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI---- 195 (311)
Q Consensus 127 --~-----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI---- 195 (311)
+ ..+.++..++++.+++.|+|+|.+..+..+.. .+. ..++++++++++.+ ++||+++|+|
T Consensus 223 ~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~-------~~~-~~~~~~~~~~k~~~-~~pv~~~G~i~~~~ 293 (361)
T cd04747 223 QQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEP-------EFE-GSELNLAGWTKKLT-GLPTITVGSVGLDG 293 (361)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCC-------CcC-ccchhHHHHHHHHc-CCCEEEECCccccc
Confidence 1 13445678899999999999988765421111 111 23678888899988 7999999999
Q ss_pred --------------CCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 196 --------------KTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 196 --------------~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
.|++++.++++. ||+|++||+++.|||+++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g 344 (361)
T cd04747 294 DFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREG 344 (361)
T ss_pred ccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcC
Confidence 699999999985 99999999999999999998753
No 35
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.92 E-value=1e-24 Score=207.26 Aligned_cols=170 Identities=16% Similarity=0.250 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 128 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~ 128 (311)
++|++||+++.++|||+||||.+ ||..|.+++.||++|+++++++.+|+++||++++.++.|++|+++.+.
T Consensus 137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~ 216 (353)
T cd02930 137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc
Confidence 67999999999999999999865 999999999999999999999999999999999888888888876532
Q ss_pred ----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 129 ----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 129 ----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
.+.++..++++.|+++|+|+|+|.... .....+....+.++.. .+..+++++.+ ++||+++|+|.|++++.+
T Consensus 217 ~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~--~e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~ 293 (353)
T cd02930 217 VEGGSTWEEVVALAKALEAAGADILNTGIGW--HEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASNRINTPEVAER 293 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc--CCCCCccccccCCchhhHHHHHHHHHhC-CCCEEEcCCCCCHHHHHH
Confidence 245578899999999999999995321 1000000111122233 35678999998 899999999999999999
Q ss_pred HHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 204 HLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 204 ~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
+++. ||+||+||+++.|||+++++++.
T Consensus 294 ~i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 294 LLADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred HHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 9985 99999999999999999998763
No 36
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.91 E-value=8.4e-24 Score=201.15 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=146.4
Q ss_pred CCCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.+.|+|++|+| .++++|.+.|+.++++|+|+||||++||+....++ .|..+.++|+.+.+|++++++.+++||.||+.
T Consensus 112 ~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs 190 (385)
T PLN02495 112 PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKMT 190 (385)
T ss_pred CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEeC
Confidence 36899999977 89999999999999999999999999999765443 68899999999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------ccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------FLKKLNPKQNRKIPILKYNFVYNLKK 182 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------~~~G~~g~~~~~~~~~~~~~i~~i~~ 182 (311)
...++ +.++++.++++|+|+|++..++. ...|+||+ ..+|.....++++++
T Consensus 191 Pn~t~------i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~---alkpiAl~~v~~i~~ 261 (385)
T PLN02495 191 PNITD------ITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSK---AVRPIALAKVMAIAK 261 (385)
T ss_pred CChhh------HHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccch---hhhHHHHHHHHHHHH
Confidence 75543 57899999999999998754321 12344443 233444556666776
Q ss_pred hCC-----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhhh
Q psy2386 183 DFP-----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLNY 231 (311)
Q Consensus 183 ~~~-----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~~ 231 (311)
.+. ++||++.|||.|.+|+.+++.. |+.|+++++++.+ |.++.++.+.|
T Consensus 262 ~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L 317 (385)
T PLN02495 262 MMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAEL 317 (385)
T ss_pred HHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHH
Confidence 642 4999999999999999999976 9999999999888 99998877654
No 37
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.91 E-value=2.9e-23 Score=215.11 Aligned_cols=166 Identities=16% Similarity=0.234 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec-cC
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI-GI 125 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~-g~ 125 (311)
++|++||+++.++|||+||||+| ||..|.+++.||++|.++.+++.||+++||+++ +.||++|++. +|
T Consensus 551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~ 630 (765)
T PRK08255 551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW 630 (765)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc
Confidence 67999999999999999999999 999999999999999999999999999999987 5799999996 34
Q ss_pred CCC-CcHHHHHHHHHHHHHcCCCEEEEec-CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 126 DDI-NSYDFVRDFVGTVSSAGCRTFIVHA-RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 126 ~~~-~~~~~~~e~~~~l~~~G~~~itvh~-Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
.+. .+.++..++++.|++.|+|+|+||+ ++.. .. .+ .+.+....++.+++++.+ ++||++||+|+|++++.+
T Consensus 631 ~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~-~~-~~---~~~~~~~~~~~~~ik~~~-~~pv~~~G~i~~~~~a~~ 704 (765)
T PRK08255 631 VEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSK-DE-KP---VYGRMYQTPFADRIRNEA-GIATIAVGAISEADHVNS 704 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCc-CC-CC---CcCccccHHHHHHHHHHc-CCEEEEeCCCCCHHHHHH
Confidence 332 2345778999999999999999994 4321 10 00 011112346778899988 899999999999999999
Q ss_pred HHhh--cCEEEEehhhhhCC-cchHHhHh
Q psy2386 204 HLNY--IDGVMLGREAYKNP-FLMSNFDL 229 (311)
Q Consensus 204 ~l~~--adgVmigRa~l~~P-~i~~~~~~ 229 (311)
+++. ||+||+||+++.|| |+++.+.+
T Consensus 705 ~l~~g~~D~v~~gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 705 IIAAGRADLCALARPHLADPAWTLHEAAE 733 (765)
T ss_pred HHHcCCcceeeEcHHHHhCccHHHHHHHH
Confidence 9986 99999999999999 56666554
No 38
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.8e-22 Score=186.01 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=148.5
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.+.+++....+..++.+.+-+..+++++ +|+|+||.+||+.+ + |..|.++|+.+.++++++++.+.+||.||+.
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G-GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C-hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 5567999999999999999999999988 89999999999964 3 7888889999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec----Cc------------cccccCCCCcCCCCCcCcHHHHHHHHHhC-C
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA----RN------------AFLKKLNPKQNRKIPILKYNFVYNLKKDF-P 185 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~----Rt------------~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~ 185 (311)
+.+ +++.++++.++++|+|+|++.. |. ....|+||+ ...|...++|+++.+.+ +
T Consensus 170 P~~------~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~---~ikp~al~~v~~l~~~~~~ 240 (310)
T COG0167 170 PNI------TDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGP---PLKPIALRVVAELYKRLGG 240 (310)
T ss_pred CCH------HHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcc---cchHHHHHHHHHHHHhcCC
Confidence 822 2578999999999999998753 21 014578887 45566789999999987 1
Q ss_pred CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhh
Q psy2386 186 ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN 230 (311)
Q Consensus 186 ~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~ 230 (311)
++|||+.|||.|++||.+++.. |+.|+||+|++.+ |+++.++.+.
T Consensus 241 ~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~ 287 (310)
T COG0167 241 DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKG 287 (310)
T ss_pred CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHH
Confidence 4999999999999999999976 9999999999777 9999888654
No 39
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.89 E-value=1.4e-22 Score=189.26 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=138.3
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.+.|+|+||.|.+++++.+.|+.++++| +|+||||++||+.. .+..+-.||+.+.+|++++++.+++||.||++
T Consensus 91 ~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKls 165 (310)
T PRK02506 91 PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTYFTKPLGVKLP 165 (310)
T ss_pred CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHhcCCccEEecC
Confidence 3589999999999999999999999998 89999999999852 24556678999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec-------------Ccc-----ccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA-------------RNA-----FLKKLNPKQNRKIPILKYNFVYNLKKDF 184 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~-------------Rt~-----~~~G~~g~~~~~~~~~~~~~i~~i~~~~ 184 (311)
...+. ..+.+.+..+.+.|++.|+... +.. .+.|+||+ ...|...++++++.+.+
T Consensus 166 p~~~~----~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~---~i~p~al~~v~~~~~~~ 238 (310)
T PRK02506 166 PYFDI----VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGD---YIKPTALANVRAFYQRL 238 (310)
T ss_pred CCCCH----HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCch---hccHHHHHHHHHHHHhc
Confidence 86532 1234444444566776653221 111 13566776 34556778899998887
Q ss_pred C-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386 185 P-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 230 (311)
Q Consensus 185 ~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~ 230 (311)
+ ++|||++|||.|.+|+.+++.. ||.||++++++. +|.++.++.+.
T Consensus 239 ~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 287 (310)
T PRK02506 239 NPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKE 287 (310)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHH
Confidence 3 6999999999999999999976 999999999876 79988877654
No 40
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.88 E-value=2.6e-21 Score=180.02 Aligned_cols=204 Identities=14% Similarity=0.143 Sum_probs=153.9
Q ss_pred CHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCc
Q psy2386 5 DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPS 83 (311)
Q Consensus 5 d~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~ 83 (311)
+..+++.|.++|. ..++++|.+. . .+.+.... +.|+.+||++. +++.+.++++.+.+.|++.|+||++||+
T Consensus 83 ~~~la~aa~~~g~-~~~~~~~~~~-~----~~~i~~~~--~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~ 154 (299)
T cd02809 83 ELATARAAAAAGI-PFTLSTVSTT-S----LEEVAAAA--PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV 154 (299)
T ss_pred HHHHHHHHHHcCC-CEEecCCCcC-C----HHHHHHhc--CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 5689999999995 6777877632 1 11111112 27999999987 9999999999999999999999999998
Q ss_pred cccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCC
Q psy2386 84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 163 (311)
Q Consensus 84 ~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g 163 (311)
...+ ...++++++++.+++||++|... ..+.++.++++|+|+|++|++.+ .
T Consensus 155 ~~~~-------------~~~~~i~~l~~~~~~pvivK~v~----------s~~~a~~a~~~G~d~I~v~~~gG-~----- 205 (299)
T cd02809 155 LGRR-------------LTWDDLAWLRSQWKGPLILKGIL----------TPEDALRAVDAGADGIVVSNHGG-R----- 205 (299)
T ss_pred CCCC-------------CCHHHHHHHHHhcCCCEEEeecC----------CHHHHHHHHHCCCCEEEEcCCCC-C-----
Confidence 6433 23367888888889999999652 14678999999999999977643 1
Q ss_pred CcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCC
Q psy2386 164 KQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIP 241 (311)
Q Consensus 164 ~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~ 241 (311)
+.+.++..|+.+.++++.++ ++|||++|||++..|+.+++.. ||+||+|| ||++..+.. + ..
T Consensus 206 --~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~-----~~l~~~~~~---g------~~ 269 (299)
T cd02809 206 --QLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR-----PFLYGLAAG---G------EA 269 (299)
T ss_pred --CCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH-----HHHHHHHhc---C------HH
Confidence 12234578999999998774 5999999999999999999987 99999999 555543321 1 12
Q ss_pred CHHHHHHHHHHHHHHHHh-cC
Q psy2386 242 TRIDIINRMILYIRQQLN-NN 261 (311)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~-~g 261 (311)
...+.++.+.++++.... .|
T Consensus 270 ~v~~~i~~l~~el~~~m~~~G 290 (299)
T cd02809 270 GVAHVLEILRDELERAMALLG 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 345667777777777666 55
No 41
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.87 E-value=1.4e-21 Score=184.07 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=143.9
Q ss_pred CCCCCCeEEEecCC-------CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386 42 NAEEHPIAFQVGDN-------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 114 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~-------~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~ 114 (311)
...+.|++++++++ ..++|++.++.+.+. +|+||||.+||+.. |...+++++.+.+++++|++.++
T Consensus 131 ~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~-ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 131 ARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPL-ADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQD 203 (335)
T ss_pred ccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhh-CCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHH
Confidence 34468999999887 579999999988874 89999999999863 34556899999999999999886
Q ss_pred -------ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc------------ccccCCCCcCCCCCcCcHH
Q psy2386 115 -------IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------FLKKLNPKQNRKIPILKYN 175 (311)
Q Consensus 115 -------~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~------------~~~G~~g~~~~~~~~~~~~ 175 (311)
+||.||+...++.. ++.++++.++++|+|+|++..++. ...|+||+ ...+...+
T Consensus 204 ~~~~~~~~Pv~vKLsP~~~~~----~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~---~i~p~al~ 276 (335)
T TIGR01036 204 GLRRVHRVPVLVKIAPDLTES----DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGK---PLQDKSTE 276 (335)
T ss_pred hhhhccCCceEEEeCCCCCHH----HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCH---HHHHHHHH
Confidence 99999999876532 468899999999999999765431 24567776 23344678
Q ss_pred HHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386 176 FVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 230 (311)
Q Consensus 176 ~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~ 230 (311)
+++++++.++ ++|||+.|||.|++|+.+++.. ||.|++|++++. +|.++.++.+.
T Consensus 277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHHhh
Confidence 8999988764 5999999999999999999986 999999999977 69999988753
No 42
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.86 E-value=1.6e-20 Score=177.80 Aligned_cols=225 Identities=17% Similarity=0.193 Sum_probs=167.7
Q ss_pred CCCHHHHHHH-HHhCCCcEEEecceeccccc----CC----ch-------hcc-ccCCCCCCeEEEec--C-----C---
Q psy2386 3 LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----GN----KK-------HCL-DFNAEEHPIAFQVG--D-----N--- 55 (311)
Q Consensus 3 ~td~~fR~l~-~~~g~~~l~~temv~a~~l~----~~----~~-------~~l-~~~~~~~p~~~Ql~--g-----~--- 55 (311)
.||.+.+.+. |.-|..+|+.||......-- +. .. ++. ..|..+.++++||+ | +
T Consensus 37 pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~ 116 (363)
T COG1902 37 PTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPW 116 (363)
T ss_pred CCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccC
Confidence 4667777666 45554689999966543221 10 11 111 12667778888887 3 0
Q ss_pred ------------------C------------HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCccc
Q psy2386 56 ------------------E------------PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILM 96 (311)
Q Consensus 56 ------------------~------------~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll 96 (311)
. .++|++||++++++|||+|||+.+ +|..|.++|.||+++.
T Consensus 117 ~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlE 196 (363)
T COG1902 117 LPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLE 196 (363)
T ss_pred CCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHH
Confidence 1 167999999999999999999965 8999999999999999
Q ss_pred CChHHHHHHHHHHhccccc--eeEEEEeccCC-C--CCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCC
Q psy2386 97 TKPLLVSDCIKAMRDSVEI--DITVKHRIGID-D--INSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~~~~--pvsvKiR~g~~-~--~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
++.+++.||+++||++++. ||.+++..... . ..+.++..++++.|++.| +|+|++.+-.....+ ......+
T Consensus 197 NR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~---~~~~~~~ 273 (363)
T COG1902 197 NRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGG---TITVSGP 273 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCC---Ccccccc
Confidence 9999999999999999954 78887776322 1 223557899999999999 799998754321111 0000001
Q ss_pred cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
.....+..+++..+ .+|||++|+|++++.+.++++. ||.|.+||+++.||.+..++++..
T Consensus 274 ~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~ 335 (363)
T COG1902 274 GYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGR 335 (363)
T ss_pred chhHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCC
Confidence 12345677788887 7999999999999999999987 999999999999999999988643
No 43
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.85 E-value=8.8e-21 Score=176.13 Aligned_cols=174 Identities=21% Similarity=0.318 Sum_probs=138.2
Q ss_pred CCCeEEEecCCC---HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 45 EHPIAFQVGDNE---PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 45 ~~p~~~Ql~g~~---~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
..|+++++.|.+ .++|.+.|+.++ .|+|+||||++||+.. .+..+..+++...++++.+++.+++||.||+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL 169 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKL 169 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEe
Confidence 579999999999 999999999888 6799999999999874 3445678899999999999999999999999
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc------------c----ccccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN------------A----FLKKLNPKQNRKIPILKYNFVYNLKKDFP 185 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt------------~----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~ 185 (311)
....++. ...+.+..+.+.|+++|+...++ . ...|+||+ ...|..+.+++++++.++
T Consensus 170 ~p~~~~~----~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~---~i~p~aL~~V~~~~~~~~ 242 (295)
T PF01180_consen 170 SPNFTDI----EPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGP---AIRPIALRWVRELRKALG 242 (295)
T ss_dssp -STSSCH----HHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEG---GGHHHHHHHHHHHHHHTT
T ss_pred cCCCCch----HHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCch---hhhhHHHHHHHHHHhccc
Confidence 9865542 23566777779999999843221 1 13456766 233456789999999984
Q ss_pred -CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhhh
Q psy2386 186 -ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLNY 231 (311)
Q Consensus 186 -~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~~ 231 (311)
++|||++|||.|++|+.+++.. ||.|++++++ +.+|+++.++.+.+
T Consensus 243 ~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L 291 (295)
T PF01180_consen 243 QDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINREL 291 (295)
T ss_dssp TSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHH
T ss_pred cceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHH
Confidence 4999999999999999999976 9999999999 88999999988654
No 44
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.85 E-value=2.3e-20 Score=176.58 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID 126 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~ 126 (311)
++|++||++++++|||+||||++ +|..|.|+|.||+++.++.+++.||+++||+++ +.||.+|+.....
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~ 228 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDF 228 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCS
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence 67999999999999999999987 699999999999999999999999999999998 5778887775322
Q ss_pred CCC--cHHHHHHHHHHHHHcCCCEEEEecCccc--cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 127 DIN--SYDFVRDFVGTVSSAGCRTFIVHARNAF--LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 127 ~~~--~~~~~~e~~~~l~~~G~~~itvh~Rt~~--~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
... +.++..++++.+++.|++.+.+..-... .................+.+..+++.+ ++||+++|+|.+++.+.
T Consensus 229 ~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae 307 (341)
T PF00724_consen 229 VEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-KIPVIGVGGIRTPEQAE 307 (341)
T ss_dssp STTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-SSEEEEESSTTHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-CceEEEEeeecchhhhH
Confidence 111 2345678899999999998875432210 000000001111113457788889887 89999999999999999
Q ss_pred HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
++++. ||.|.+||+++.||.+.+++.+.
T Consensus 308 ~~l~~g~~DlV~~gR~~ladPd~~~k~~~g 337 (341)
T PF00724_consen 308 KALEEGKADLVAMGRPLLADPDLPNKAREG 337 (341)
T ss_dssp HHHHTTSTSEEEESHHHHH-TTHHHHHHHT
T ss_pred HHHhcCCceEeeccHHHHhCchHHHHHHcC
Confidence 99976 99999999999999999998763
No 45
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.84 E-value=2e-20 Score=177.25 Aligned_cols=163 Identities=14% Similarity=0.228 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEec
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLN 78 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN 78 (311)
|+||.+||.+|+++|+.++ |++++|. . +++..|+.+||+| ++|+. ++|++++++.+++.
T Consensus 54 gVtd~~fr~~~~~~Galgv-----vsaegl~~~--------~~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~~~~---- 115 (369)
T TIGR01304 54 ALVSPEFAIELGELGGLGV-----LNLEGLWGR--------HEDPDPAIAKIAEAYEEGDQ-AAATRLLQELHAAP---- 115 (369)
T ss_pred cccCHHHHHHHHHcCCccc-----ccchHHHhc--------CCCHHHHHHHHhhcCCChHH-HHHHHHHHHcCCCc----
Confidence 6999999999999996455 8888886 3 2223567799999 67777 99999999987665
Q ss_pred cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158 (311)
Q Consensus 79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~ 158 (311)
.+|+++.+++++++++. |+||+|++.. ...++++.++++|++.|++|+||. .
T Consensus 116 ------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~------~~~e~a~~l~eAGad~I~ihgrt~-~ 167 (369)
T TIGR01304 116 ------------------LKPELLGERIAEVRDSG---VITAVRVSPQ------NAREIAPIVVKAGADLLVIQGTLV-S 167 (369)
T ss_pred ------------------cChHHHHHHHHHHHhcc---eEEEEecCCc------CHHHHHHHHHHCCCCEEEEeccch-h
Confidence 37999999999999973 9999999532 257999999999999999999996 3
Q ss_pred ccC-CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 159 KKL-NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 159 ~G~-~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
++| +| ..+|..+.++++.. ++|||+ |||.|.+++.++++. ||+||+||+...
T Consensus 168 q~~~sg-------~~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 168 AEHVST-------SGEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGAN 221 (369)
T ss_pred hhccCC-------CCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 443 22 25799899999988 799998 999999999999986 999999987743
No 46
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.84 E-value=8.5e-20 Score=173.77 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEecc---
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIG--- 124 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g--- 124 (311)
++|++||++++++|||+||||++ .|..|.|+|.||+.+.++.+++.||+++||++++. .|.+|+...
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~ 238 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 67999999999999999999976 69999999999999999999999999999999853 466666531
Q ss_pred --CCCCCcHHH-HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 125 --IDDINSYDF-VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 125 --~~~~~~~~~-~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.+...+.++ ..++++.|++.|+|+|.|..... .+ . .+....+.+++++.+ ++||+++|++ |++.+
T Consensus 239 ~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~--~~---~-----~~~~~~~~~~ik~~~-~~pv~~~G~~-~~~~a 306 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW--AG---G-----EPYSDAFREKVRARF-HGVIIGAGAY-TAEKA 306 (362)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc--cC---C-----ccccHHHHHHHHHHC-CCCEEEeCCC-CHHHH
Confidence 111233445 68999999999999999975421 11 1 112345678899988 7999999996 89999
Q ss_pred HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
.+.++. ||.|++||+++.||++.+++.+
T Consensus 307 e~~i~~G~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 307 ETLIGKGLIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred HHHHHcCCCCEEEECHHhhhCccHHHHHhc
Confidence 999986 9999999999999999999875
No 47
>PLN02826 dihydroorotate dehydrogenase
Probab=99.83 E-value=1.8e-19 Score=173.06 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=138.3
Q ss_pred CCeEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc--------
Q psy2386 46 HPIAFQVGDN-----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-------- 112 (311)
Q Consensus 46 ~p~~~Ql~g~-----~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-------- 112 (311)
.|++++|+++ .+++|.+.++.+.+. +|+|+||.+||+.. |-.-+++++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~ 259 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGE 259 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhcc
Confidence 3899999888 689999999999875 89999999999963 334567899999999999743
Q ss_pred -ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------ccccCCCCcCCCCCcCcHHHHH
Q psy2386 113 -VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------FLKKLNPKQNRKIPILKYNFVY 178 (311)
Q Consensus 113 -~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------~~~G~~g~~~~~~~~~~~~~i~ 178 (311)
..+||.||+....+++ ++.++++.+.++|+|.|++..++. ...|+||+.- .+...++++
T Consensus 260 ~~~~Pv~vKlaPdl~~~----di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl---~~~sl~~v~ 332 (409)
T PLN02826 260 EGPPPLLVKIAPDLSKE----DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPL---FDLSTEVLR 332 (409)
T ss_pred ccCCceEEecCCCCCHH----HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccc---cHHHHHHHH
Confidence 4689999998755432 467899999999999999875331 1356777632 234578899
Q ss_pred HHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386 179 NLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN 230 (311)
Q Consensus 179 ~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~ 230 (311)
++.+.++ ++|||+.|||.|.+|+.+++.. |+.|+++++++. .|+++.++.+.
T Consensus 333 ~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~e 387 (409)
T PLN02826 333 EMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAE 387 (409)
T ss_pred HHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHH
Confidence 9988764 5999999999999999999976 999999999866 58888777654
No 48
>PLN02411 12-oxophytodienoate reductase
Probab=99.82 E-value=5e-19 Score=170.07 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccC--
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGI-- 125 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~-- 125 (311)
++|++||+++.++|||+||||++ +|..|.|+|.||+.+.++.+++.||+++||++++. .|.||+....
T Consensus 165 ~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~ 244 (391)
T PLN02411 165 EHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDH 244 (391)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccc
Confidence 67999999999999999999976 79999999999999999999999999999999853 4777766421
Q ss_pred ---CCCCcHHHHHHHHHHHHHc------CCCEEEEecCccccccCCCCc-CCCCCcCcH-HHHHHHHHhCCCCeEEEecC
Q psy2386 126 ---DDINSYDFVRDFVGTVSSA------GCRTFIVHARNAFLKKLNPKQ-NRKIPILKY-NFVYNLKKDFPELEIIINGG 194 (311)
Q Consensus 126 ---~~~~~~~~~~e~~~~l~~~------G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~-~~i~~i~~~~~~ipvi~nGg 194 (311)
.+.+..++..++++.+++. |+|+|.|..... ..+.... ........+ .+.+++++.+ ++||+++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~--~~~~~~~~~~~~~~~~~~~~a~~ik~~v-~~pvi~~G~ 321 (391)
T PLN02411 245 LDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRY--TAYGQTESGRHGSEEEEAQLMRTLRRAY-QGTFMCSGG 321 (391)
T ss_pred cCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcc--cccCCCcccccCCccchhHHHHHHHHHc-CCCEEEECC
Confidence 1122233456777777763 599999975431 1111000 001011112 4568899988 799999999
Q ss_pred CCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 195 IKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 195 I~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
| +++++.++++. ||.|.+||+++.||.+.+++++
T Consensus 322 i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 322 F-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred C-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 9 67999999975 9999999999999999999875
No 49
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.75 E-value=8.9e-18 Score=151.67 Aligned_cols=127 Identities=17% Similarity=0.329 Sum_probs=105.8
Q ss_pred cccCcccCChHHHHHHHHHHhccc--ccee---EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCC
Q psy2386 90 FFGAILMTKPLLVSDCIKAMRDSV--EIDI---TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164 (311)
Q Consensus 90 ~~G~~Ll~~~~~~~~iv~~v~~~~--~~pv---svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~ 164 (311)
..|+++++||+++.++++++.+.+ ++++ .+|++ ||++... .+.++++.+++.|++.|++|+|++ .+.+
T Consensus 102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~--~~~~~~~~l~~~G~~~iiv~~~~~-~g~~--- 174 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGG--DLWEVLERLDSAGCSRYVVTDVTK-DGTL--- 174 (241)
T ss_pred EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCc--cHHHHHHHHHhcCCCEEEEEeecC-CCCc---
Confidence 568999999999999999997765 4455 66664 8876432 568999999999999999999986 2333
Q ss_pred cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh----hcCEEEEehhhhhCCcchHHhHh
Q psy2386 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN----YIDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~----~adgVmigRa~l~~P~i~~~~~~ 229 (311)
.+ .||+.++++++.. ++|||+||||+|++|+.++.+ .|||||+||+++.++.-+.++.+
T Consensus 175 ----~G-~d~~~i~~i~~~~-~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~ 237 (241)
T PRK14024 175 ----TG-PNLELLREVCART-DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA 237 (241)
T ss_pred ----cC-CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence 33 3999999999987 899999999999999999863 39999999999999987777654
No 50
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.75 E-value=8.4e-18 Score=151.99 Aligned_cols=145 Identities=23% Similarity=0.304 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140 (311)
Q Consensus 61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~ 140 (311)
.++|++++++||+.|++|.|||+..+.++ |.++|++|+.+. +|++.+++||++|+|.|. ..-++.
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ---------~~Ea~~ 91 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH---------FVEAQI 91 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH---------HHHHHH
Confidence 46889999999999999999999986655 999999999977 666678999999999873 122455
Q ss_pred HHHcCCCEEE---------------------------------------------Ee--------------cCc-----c
Q psy2386 141 VSSAGCRTFI---------------------------------------------VH--------------ARN-----A 156 (311)
Q Consensus 141 l~~~G~~~it---------------------------------------------vh--------------~Rt-----~ 156 (311)
|++.|+|.|- -+ -|+ .
T Consensus 92 L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~ 171 (293)
T PRK04180 92 LEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIR 171 (293)
T ss_pred HHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHH
Confidence 5555655553 11 010 0
Q ss_pred ccccCCCCcCCC---CCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386 157 FLKKLNPKQNRK---IPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 157 ~~~G~~g~~~~~---~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~~P 221 (311)
.+.||++..... .-.++|+.++++++.. ++||+ +.|||.|++++..+++. ||+|++|++++..+
T Consensus 172 ~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 172 RLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG 241 (293)
T ss_pred HHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence 134554322111 2346899999999987 79998 99999999999999987 99999999997433
No 51
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.66 E-value=2.1e-15 Score=137.54 Aligned_cols=177 Identities=10% Similarity=0.157 Sum_probs=125.1
Q ss_pred HhCCCcEEEecceecccccCCchhccc-c-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc
Q psy2386 14 QITRYSWLYTEMFTTQAILGNKKHCLD-F-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF 91 (311)
Q Consensus 14 ~~g~~~l~~temv~a~~l~~~~~~~l~-~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~ 91 (311)
..|...+.+|..-.+...-+....+++ . .....| +|++| ....+.++.+++ +.|++.|.||
T Consensus 41 ~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~p--v~~gG-Gi~s~~d~~~l~-~~G~~~vvig------------- 103 (258)
T PRK01033 41 EKEVDELIVLDIDASKRGSEPNYELIENLASECFMP--LCYGG-GIKTLEQAKKIF-SLGVEKVSIN------------- 103 (258)
T ss_pred HcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCC--EEECC-CCCCHHHHHHHH-HCCCCEEEEC-------------
Confidence 445445777776544322211111111 1 112345 46655 555566555544 6799999998
Q ss_pred cCcccCChHHHHHHHHHHhccccceeEEEEecc-----------CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc
Q psy2386 92 GAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-----------IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK 160 (311)
Q Consensus 92 G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-----------~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G 160 (311)
++++++|+++.++++.+.+. .+++++++|.| |.+.... ...++++.+++.|++.+++|++++ .+.
T Consensus 104 -s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~-~~~e~~~~~~~~g~~~ii~~~i~~-~G~ 179 (258)
T PRK01033 104 -TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKK-DPLELAKEYEALGAGEILLNSIDR-DGT 179 (258)
T ss_pred -hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCC-CHHHHHHHHHHcCCCEEEEEccCC-CCC
Confidence 56789999999999998543 37788888765 2121111 357899999999999999999885 222
Q ss_pred CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh-h-cCEEEEehhhhhC
Q psy2386 161 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN-Y-IDGVMLGREAYKN 220 (311)
Q Consensus 161 ~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~-~-adgVmigRa~l~~ 220 (311)
++| .||+.++++++.+ ++|||++|||.|.+|+.++++ . ||||++|++++..
T Consensus 180 ~~G--------~d~~~i~~~~~~~-~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 180 MKG--------YDLELLKSFRNAL-KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred cCC--------CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 332 3999999999987 799999999999999999994 4 9999999999776
No 52
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.64 E-value=1e-14 Score=138.50 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=128.4
Q ss_pred HHHHhCCCcEEEecceecccccC-C---chhccccCCCCCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386 11 FHRQITRYSWLYTEMFTTQAILG-N---KKHCLDFNAEEHPIAFQVGDNE-----PKKLAKSAKIIQKWGYDEINLNCGC 81 (311)
Q Consensus 11 l~~~~g~~~l~~temv~a~~l~~-~---~~~~l~~~~~~~p~~~Ql~g~~-----~~~~~~aa~~~~~~g~d~IdiN~gC 81 (311)
.|++.| ..+.+..+= .++.. + ..+.++....+.|++++|+... ++.+.++++.+ ++|+++||++|
T Consensus 85 ~a~~~G-~~~~~Gs~~--~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~---~adal~l~l~~ 158 (352)
T PRK05437 85 AAEELG-IAMGVGSQR--AALKDPELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMI---EADALQIHLNP 158 (352)
T ss_pred HHHHcC-CCeEecccH--hhccChhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhc---CCCcEEEeCcc
Confidence 667787 345665551 11111 1 1122222334789999777643 56666655544 68999999999
Q ss_pred CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc--c
Q psy2386 82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL--K 159 (311)
Q Consensus 82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~--~ 159 (311)
|+.-+...+. .+.+.+.++++++++.+++||.||.. |.. . ..+.++.++++|+|+|+|+|+.... .
T Consensus 159 ~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g~g--~----s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 159 LQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEV-GFG--I----SKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred chhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeC-CCC--C----cHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 9876655433 45667789999999999999999987 321 1 2578999999999999999874210 0
Q ss_pred --cCCCCc-CCCCCcCcH-----HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 160 --KLNPKQ-NRKIPILKY-----NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 160 --G~~g~~-~~~~~~~~~-----~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
.+.+.. .......+| +.+.++++..+++|||++|||+|+.|+.+++.. ||+|++||+++.
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~ 295 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLK 295 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence 000000 000011222 467777776347999999999999999999987 999999999976
No 53
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.62 E-value=1.1e-14 Score=137.32 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=127.3
Q ss_pred HHHHHHhCCCcEEEecceecccccC-C---chhccccCCCCCCeEEEecCCCHHH--HHHHHHHHHHcCCCEEEeccCCC
Q psy2386 9 RMFHRQITRYSWLYTEMFTTQAILG-N---KKHCLDFNAEEHPIAFQVGDNEPKK--LAKSAKIIQKWGYDEINLNCGCP 82 (311)
Q Consensus 9 R~l~~~~g~~~l~~temv~a~~l~~-~---~~~~l~~~~~~~p~~~Ql~g~~~~~--~~~aa~~~~~~g~d~IdiN~gCP 82 (311)
-..|++.|- .+.+... ++ ++.+ . +.+.++....+.|++++|++..... ..++.+.++..++|+++||+.||
T Consensus 76 a~~a~~~g~-~~~~Gs~-~~-~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~ 152 (333)
T TIGR02151 76 ARAARELGI-PMGVGSQ-RA-ALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVL 152 (333)
T ss_pred HHHHHHcCC-CeEEcCc-hh-hccChhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccc
Confidence 347778883 4554431 11 1211 1 1223333345889999988643321 33333334444689999999999
Q ss_pred ccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc--c-
Q psy2386 83 SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL--K- 159 (311)
Q Consensus 83 ~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~--~- 159 (311)
+..+...+.. +.+...++++++++.+++||.||.. |.. . ..+.++.++++|+|+|+|+|+.... .
T Consensus 153 q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~g--~----~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 153 QELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GFG--I----SKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred ccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CCC--C----CHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 8876665542 3456778999999999999999965 432 1 3688999999999999999874310 0
Q ss_pred -cCCCCcCC-CCCcCcH-----HHHHHHHH-hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 160 -KLNPKQNR-KIPILKY-----NFVYNLKK-DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 160 -G~~g~~~~-~~~~~~~-----~~i~~i~~-~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
.+...... .....+| +.+.++++ .. ++|||++|||++++|+.+++.. ||+|++||+++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRSDAP-DAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHhcCC-CCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 00000000 0111345 45666666 44 7999999999999999999987 999999999874
No 54
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.61 E-value=8.7e-15 Score=139.17 Aligned_cols=160 Identities=15% Similarity=0.222 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC 81 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC 81 (311)
++|+.+||..+.++|..+++. +.+|. ...++..|+..||++.++ .++++.+++.+.+
T Consensus 57 gVt~~~la~avs~~GglGvl~-----~~gl~-------~~~~~~e~l~~qi~~~~~---~~~~~~~~~~~~~-------- 113 (368)
T PRK08649 57 AVVSPETAIELGKLGGLGVLN-----LEGLW-------TRYEDPEPILDEIASLGK---DEATRLMQELYAE-------- 113 (368)
T ss_pred ccCCHHHHHHHHhCCCceEEe-----ecccc-------ccCCCHHHHHHHHHhcCc---HHHHHHHHHhhcC--------
Confidence 689999999999999645655 33331 223445678899998888 5566777775422
Q ss_pred CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccC
Q psy2386 82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 161 (311)
Q Consensus 82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~ 161 (311)
| .+|+++.+++++++++ + |+||+|++. . +..++++.++++|+|.|++|+||. .+.|
T Consensus 114 P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~--~----~~~e~a~~l~eaGvd~I~vhgrt~-~~~h 169 (368)
T PRK08649 114 P--------------IKPELITERIAEIRDA-G--VIVAVSLSP--Q----RAQELAPTVVEAGVDLFVIQGTVV-SAEH 169 (368)
T ss_pred C--------------CCHHHHHHHHHHHHhC-e--EEEEEecCC--c----CHHHHHHHHHHCCCCEEEEeccch-hhhc
Confidence 3 5699999999999996 4 666777631 1 247899999999999999999986 3333
Q ss_pred CCCcCCCCCcC-cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386 162 NPKQNRKIPIL-KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 162 ~g~~~~~~~~~-~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~ 217 (311)
. ... +|..+.++++.. ++|||+ |+|.|+++++++++. ||+||+|+|-
T Consensus 170 ~-------~~~~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 170 V-------SKEGEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred c-------CCcCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 2 223 788888888887 799999 999999999999987 9999999874
No 55
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.59 E-value=3.3e-14 Score=127.45 Aligned_cols=151 Identities=16% Similarity=0.310 Sum_probs=109.4
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE------
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH------ 121 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi------ 121 (311)
+-+|+.|. .....++.+.+ +.|+|.|- .|+.++.+|+++.++.+.+.+. .+.+++.+
T Consensus 74 ~pv~~~Gg-I~~~e~~~~~~-~~Gad~vv--------------igs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~ 136 (234)
T cd04732 74 IPVQVGGG-IRSLEDIERLL-DLGVSRVI--------------IGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVA 136 (234)
T ss_pred CCEEEeCC-cCCHHHHHHHH-HcCCCEEE--------------ECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEE
Confidence 34666663 33333333333 57899884 4677889999999999987651 22233332
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
+.+|..... .+..++++.+++.|++.+++|+++. .|. +. ..+|+.++++++.+ ++||+++|||+|++|+
T Consensus 137 ~~~~~~~~~-~~~~~~~~~~~~~ga~~iii~~~~~--~g~------~~-g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di 205 (234)
T cd04732 137 TKGWLETSE-VSLEELAKRFEELGVKAIIYTDISR--DGT------LS-GPNFELYKELAAAT-GIPVIASGGVSSLDDI 205 (234)
T ss_pred ECCCeeecC-CCHHHHHHHHHHcCCCEEEEEeecC--CCc------cC-CCCHHHHHHHHHhc-CCCEEEecCCCCHHHH
Confidence 234532111 1467899999999999999999874 111 12 26899999999988 7999999999999999
Q ss_pred HHHHhh-cCEEEEehhhhhCCcchHH
Q psy2386 202 DLHLNY-IDGVMLGREAYKNPFLMSN 226 (311)
Q Consensus 202 ~~~l~~-adgVmigRa~l~~P~i~~~ 226 (311)
.++++. |||||+||+++.++.-+.+
T Consensus 206 ~~~~~~Ga~gv~vg~~~~~~~~~~~~ 231 (234)
T cd04732 206 KALKELGVAGVIVGKALYEGKITLEE 231 (234)
T ss_pred HHHHHCCCCEEEEeHHHHcCCCCHHH
Confidence 999987 9999999999999865544
No 56
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.58 E-value=6.4e-14 Score=126.56 Aligned_cols=190 Identities=10% Similarity=0.143 Sum_probs=124.9
Q ss_pred HHHhCCCcEEEecceecccccCCchhccc-c-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccC
Q psy2386 12 HRQITRYSWLYTEMFTTQAILGNKKHCLD-F-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG 89 (311)
Q Consensus 12 ~~~~g~~~l~~temv~a~~l~~~~~~~l~-~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~ 89 (311)
....|...++++..-.+..--+....+++ . ...+.|+++.=+=.+++++.+. .+.|++.|.+|
T Consensus 36 ~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~----l~~G~~~v~ig----------- 100 (243)
T cd04731 36 YNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRL----LRAGADKVSIN----------- 100 (243)
T ss_pred HHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH----HHcCCceEEEC-----------
Confidence 34556545667766543111111111111 1 1123565542222345544333 34689999886
Q ss_pred cccCcccCChHHHHHHHHHHhc-cccceeEEEEec---------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386 90 FFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRI---------GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 159 (311)
Q Consensus 90 ~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvKiR~---------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~ 159 (311)
++++++|+.+.++++.+.+ .+-+++.+|.|. ||.+.... +..++++.+++.|++.|++|+++. .
T Consensus 101 ---~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~-~~~~~~~~l~~~G~d~i~v~~i~~--~ 174 (243)
T cd04731 101 ---SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGL-DAVEWAKEVEELGAGEILLTSMDR--D 174 (243)
T ss_pred ---chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCC-CHHHHHHHHHHCCCCEEEEeccCC--C
Confidence 5667899999999998853 344555555432 23322211 467899999999999999999874 1
Q ss_pred cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
|. ....+|++++++++.. ++||+++|||+|++|+.++++. ||+||+||+++..-.-+.++++.
T Consensus 175 g~-------~~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~ 239 (243)
T cd04731 175 GT-------KKGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEY 239 (243)
T ss_pred CC-------CCCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHH
Confidence 21 1125899999999987 8999999999999999999974 99999999998877666665543
No 57
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.57 E-value=9.7e-14 Score=125.13 Aligned_cols=154 Identities=18% Similarity=0.288 Sum_probs=113.2
Q ss_pred eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc-cccceeEEE---E
Q psy2386 48 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVK---H 121 (311)
Q Consensus 48 ~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvK---i 121 (311)
+-+|+.| +++++.. .+.++|+|.|-+ |+.++++|+++.++++.+.+ .+-+.+++| +
T Consensus 77 ~~l~v~GGi~~~~~~~----~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v 138 (241)
T PRK13585 77 VPVQLGGGIRSAEDAA----SLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEV 138 (241)
T ss_pred CcEEEcCCcCCHHHHH----HHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEE
Confidence 4455543 3444443 333589999876 67778899999999888743 222223322 1
Q ss_pred e-ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 122 R-IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 122 R-~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
. .||...... +..++++.+++.|++.|++|+++. .|. . ...+|+.++++++.+ ++||+++|||+|++|
T Consensus 139 ~~~g~~~~~~~-~~~~~~~~~~~~G~~~i~~~~~~~--~g~------~-~g~~~~~i~~i~~~~-~iPvia~GGI~~~~d 207 (241)
T PRK13585 139 VIKGWTEKTGY-TPVEAAKRFEELGAGSILFTNVDV--EGL------L-EGVNTEPVKELVDSV-DIPVIASGGVTTLDD 207 (241)
T ss_pred EECCCcccCCC-CHHHHHHHHHHcCCCEEEEEeecC--CCC------c-CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHH
Confidence 1 367643321 357899999999999999999864 221 1 235999999999998 799999999999999
Q ss_pred HHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386 201 IDLHLNY-IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 201 a~~~l~~-adgVmigRa~l~~P~i~~~~~~~ 230 (311)
+.++++. |++|++|++++.+|..+.++...
T Consensus 208 i~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 208 LRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred HHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 9998766 99999999999999998887654
No 58
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.56 E-value=1e-13 Score=124.32 Aligned_cols=180 Identities=12% Similarity=0.209 Sum_probs=132.2
Q ss_pred CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccC
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCG 80 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~g 80 (311)
|+||..|+..+.++|..++..++|++.+.+...-.++.... +.|+.++++.+++ ..+.+-++.+.++|+|+|.+|.+
T Consensus 12 g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~ 89 (236)
T cd04730 12 GVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT--DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG 89 (236)
T ss_pred CCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc--CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC
Confidence 78999999999999966888889998776641011111111 4688899999886 45667777888999999999866
Q ss_pred CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc
Q psy2386 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK 160 (311)
Q Consensus 81 CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G 160 (311)
+| .++++.+++ .++++.+++.. .+.++.+.+.|+|+|.++++. ..|
T Consensus 90 ~~--------------------~~~~~~~~~-~~i~~i~~v~~-----------~~~~~~~~~~gad~i~~~~~~--~~G 135 (236)
T cd04730 90 PP--------------------AEVVERLKA-AGIKVIPTVTS-----------VEEARKAEAAGADALVAQGAE--AGG 135 (236)
T ss_pred CC--------------------HHHHHHHHH-cCCEEEEeCCC-----------HHHHHHHHHcCCCEEEEeCcC--CCC
Confidence 32 123444444 36777776431 244677788999999999874 233
Q ss_pred CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 161 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 161 ~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
..+.. ....++.++++++.+ ++||+++|||.+++++.+++.. +|||++|++++..+.
T Consensus 136 ~~~~~----~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e 193 (236)
T cd04730 136 HRGTF----DIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred CCCcc----ccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence 32221 124688999999987 7999999999999999999977 999999999987664
No 59
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.56 E-value=1.2e-13 Score=124.01 Aligned_cols=175 Identities=8% Similarity=0.093 Sum_probs=120.5
Q ss_pred HHhCCCcEEEecceecccccCCchhcccc--CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc
Q psy2386 13 RQITRYSWLYTEMFTTQAILGNKKHCLDF--NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF 90 (311)
Q Consensus 13 ~~~g~~~l~~temv~a~~l~~~~~~~l~~--~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~ 90 (311)
.++|...+.+|..-.+....+....+++. ...+.|+ |+ |..+..+.++.+ +.+.|++.|.+|
T Consensus 40 ~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv--~~-~ggi~~~~d~~~-~~~~G~~~vilg------------ 103 (232)
T TIGR03572 40 NAKGADELIVLDIDASKRGREPLFELISNLAEECFMPL--TV-GGGIRSLEDAKK-LLSLGADKVSIN------------ 103 (232)
T ss_pred HHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCE--EE-ECCCCCHHHHHH-HHHcCCCEEEEC------------
Confidence 45565557777664432221111111111 1124555 44 555666666555 445699999886
Q ss_pred ccCcccCChHHHHHHHHHHhccccceeEEEEecc------------CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386 91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG------------IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g------------~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~ 158 (311)
++++++|+++.++++...+. .+++++++|.+ |...... +..++++.+++.|++.|++|+++..
T Consensus 104 --~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~G~d~i~i~~i~~~- 178 (232)
T TIGR03572 104 --TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGR-DPVEWAREAEQLGAGEILLNSIDRD- 178 (232)
T ss_pred --hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCC-CHHHHHHHHHHcCCCEEEEeCCCcc-
Confidence 66889999999999887443 26788887764 2211111 3579999999999999999997641
Q ss_pred ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhh
Q psy2386 159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA 217 (311)
Q Consensus 159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~ 217 (311)
+.. ...+|+.++++++.+ ++||+++|||+|++|+.+++.. ||+|++|+++
T Consensus 179 g~~--------~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 179 GTM--------KGYDLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCc--------CCCCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 111 125899999999998 7999999999999999996643 9999999987
No 60
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.55 E-value=7.2e-14 Score=125.24 Aligned_cols=143 Identities=17% Similarity=0.296 Sum_probs=105.5
Q ss_pred EEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe----c
Q psy2386 50 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR----I 123 (311)
Q Consensus 50 ~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR----~ 123 (311)
+|+.| .+.+++. .+.+.|++.|= .|++++.+|+.+.++++.+.+.+.+++.+|.+ .
T Consensus 77 v~~~GGI~~~ed~~----~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~ 138 (233)
T PRK00748 77 VQVGGGIRSLETVE----ALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATD 138 (233)
T ss_pred EEEcCCcCCHHHHH----HHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEc
Confidence 44544 3444443 33346888764 46888999999999999986654444444321 3
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
||...... .+.++++.+++.|++.|++|++++ .+. +.+ +||+.++++++.+ ++|||++|||.|++|+.+
T Consensus 139 g~~~~~~~-~~~e~~~~~~~~g~~~ii~~~~~~-~g~-------~~G-~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~ 207 (233)
T PRK00748 139 GWLETSGV-TAEDLAKRFEDAGVKAIIYTDISR-DGT-------LSG-PNVEATRELAAAV-PIPVIASGGVSSLDDIKA 207 (233)
T ss_pred cCeecCCC-CHHHHHHHHHhcCCCEEEEeeecC-cCC-------cCC-CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHH
Confidence 56432221 457899999999999999999875 121 222 5999999999988 699999999999999999
Q ss_pred HHhh--cCEEEEehhhhhCC
Q psy2386 204 HLNY--IDGVMLGREAYKNP 221 (311)
Q Consensus 204 ~l~~--adgVmigRa~l~~P 221 (311)
+++. |||||+||+++..-
T Consensus 208 ~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 208 LKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred HHHcCCccEEEEEHHHHcCC
Confidence 9984 99999999998763
No 61
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.54 E-value=2.3e-13 Score=128.15 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=115.0
Q ss_pred CCCCCCeEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386 42 NAEEHPIAFQVGDN-----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~-----~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p 116 (311)
...+.|++++++.. +++.+.++.+ ..++|+++||++||+..+...+. ++.+...+.++.+++.+++|
T Consensus 109 ~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~---~~~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vP 180 (326)
T cd02811 109 APPNGPLIANLGAVQLNGYGVEEARRAVE---MIEADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVP 180 (326)
T ss_pred hCCCceEEeecCccccCCCCHHHHHHHHH---hcCCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCC
Confidence 45578998888865 4555555544 44689999999998875554432 45566778899999989999
Q ss_pred eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--cc--ccCCCCcC---CCCCcCcH-----HHHHHHHHhC
Q psy2386 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--FL--KKLNPKQN---RKIPILKY-----NFVYNLKKDF 184 (311)
Q Consensus 117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--~~--~G~~g~~~---~~~~~~~~-----~~i~~i~~~~ 184 (311)
|.||..- . .. ..+.++.++++|+|+|.|+|+-. +. ..+.+... ......+| +.+.++++.+
T Consensus 181 VivK~~g-~--g~----s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~ 253 (326)
T cd02811 181 VIVKEVG-F--GI----SRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL 253 (326)
T ss_pred EEEEecC-C--CC----CHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHc
Confidence 9999753 2 11 25789999999999999987521 10 00111000 00111233 4667777766
Q ss_pred CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 185 PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 185 ~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+++|||++|||++..|+.+++.. ||+|++||+++.
T Consensus 254 ~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 254 PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 57999999999999999999987 999999999864
No 62
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.53 E-value=2.6e-13 Score=123.40 Aligned_cols=150 Identities=11% Similarity=0.179 Sum_probs=114.2
Q ss_pred EEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh-----cccc-------c
Q psy2386 50 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-----DSVE-------I 115 (311)
Q Consensus 50 ~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~-----~~~~-------~ 115 (311)
+|+.| .+.+++.++. +.|++.|-|+ +.++++|+.+.++.+.+. -.++ .
T Consensus 77 v~~~GGi~s~~~~~~~l----~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~ 138 (253)
T PRK02083 77 LTVGGGIRSVEDARRLL----RAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPG 138 (253)
T ss_pred EEeeCCCCCHHHHHHHH----HcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence 44444 3555554433 3689998775 667889999999999873 2233 4
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
|++||+|.+++..+. ...++++.+++.|++.+++|+ |..+.+| .||+.++++++.. ++|||++|
T Consensus 139 ~~~v~~~~~~~~~~~--~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g-----------~d~~~i~~~~~~~-~ipvia~G 204 (253)
T PRK02083 139 RWEVYTHGGRKPTGL--DAVEWAKEVEELGAGEILLTSMDRDGTKNG-----------YDLELTRAVSDAV-NVPVIASG 204 (253)
T ss_pred CEEEEEcCCceecCC--CHHHHHHHHHHcCCCEEEEcCCcCCCCCCC-----------cCHHHHHHHHhhC-CCCEEEEC
Confidence 679999976654332 357899999999999999976 4333333 4899999999987 79999999
Q ss_pred CCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 194 GIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 194 gI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
||.|.+|+.++++. ||+||+|++++..-.-+.++++.+
T Consensus 205 Gv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 205 GAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred CCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence 99999999999963 999999999988766666666554
No 63
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.52 E-value=3.5e-13 Score=120.70 Aligned_cols=144 Identities=17% Similarity=0.312 Sum_probs=107.7
Q ss_pred eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe---
Q psy2386 48 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR--- 122 (311)
Q Consensus 48 ~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR--- 122 (311)
+-+|+.| .+.++.. .+.++|+|.|= .|+.++++|+.+.++++++... .+.+++++|
T Consensus 73 ~pi~~ggGI~~~ed~~----~~~~~Ga~~vv--------------lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~ 133 (230)
T TIGR00007 73 VPVQVGGGIRSLEDVE----KLLDLGVDRVI--------------IGTAAVENPDLVKELLKEYGPE-RIVVSLDARGGE 133 (230)
T ss_pred CCEEEeCCcCCHHHHH----HHHHcCCCEEE--------------EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCE
Confidence 3455544 4555543 34457998873 3677788999999999998532 245666665
Q ss_pred ---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386 123 ---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 123 ---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
.||.+.... ...++++.+++.|++.+++|.+++. +..+ ..||+.++++++.+ ++||+++|||+|++
T Consensus 134 v~~~g~~~~~~~-~~~~~~~~~~~~g~~~ii~~~~~~~-g~~~--------g~~~~~i~~i~~~~-~ipvia~GGi~~~~ 202 (230)
T TIGR00007 134 VAVKGWLEKSEV-SLEELAKRLEELGLEGIIYTDISRD-GTLS--------GPNFELTKELVKAV-NVPVIASGGVSSID 202 (230)
T ss_pred EEEcCCcccCCC-CHHHHHHHHHhCCCCEEEEEeecCC-CCcC--------CCCHHHHHHHHHhC-CCCEEEeCCCCCHH
Confidence 356543222 3578999999999999999998751 1111 25999999999987 89999999999999
Q ss_pred HHHHHHhh-cCEEEEehhhhhCC
Q psy2386 200 EIDLHLNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 200 da~~~l~~-adgVmigRa~l~~P 221 (311)
|+.++++. |||||+||+++.+-
T Consensus 203 di~~~~~~Gadgv~ig~a~~~~~ 225 (230)
T TIGR00007 203 DLIALKKLGVYGVIVGKALYEGK 225 (230)
T ss_pred HHHHHHHCCCCEEEEeHHHHcCC
Confidence 99998876 99999999998874
No 64
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.51 E-value=1.5e-12 Score=111.94 Aligned_cols=177 Identities=13% Similarity=0.099 Sum_probs=124.4
Q ss_pred HHHHHHHhCCCcEEEecceeccccc-CCch---hccccCCCCCCeEEEecCCCHHHHH-HHHHHHHHcCCCEEEeccCCC
Q psy2386 8 CRMFHRQITRYSWLYTEMFTTQAIL-GNKK---HCLDFNAEEHPIAFQVGDNEPKKLA-KSAKIIQKWGYDEINLNCGCP 82 (311)
Q Consensus 8 fR~l~~~~g~~~l~~temv~a~~l~-~~~~---~~l~~~~~~~p~~~Ql~g~~~~~~~-~aa~~~~~~g~d~IdiN~gCP 82 (311)
+.+.+.+.| .++..++.......- .... -....+..+.|+++|+..+++.+.. .+|+.+.++|+|+|+||.+||
T Consensus 17 ~~~~~~~~G-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~ 95 (200)
T cd04722 17 LAKAAAEAG-ADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVG 95 (200)
T ss_pred HHHHHHcCC-CCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCC
Confidence 444455556 467777766655442 1110 1111234578999999998877654 346788899999999999998
Q ss_pred ccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccC
Q psy2386 83 SNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 161 (311)
Q Consensus 83 ~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~ 161 (311)
.. ++...++++++++.+ +.|+.+|++....... . .+.+.|+++|.++++.....+.
T Consensus 96 ~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~------~---~~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 96 YL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAA------A---AAEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred cH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch------h---hHHHcCCCEEEEcCCcCCCCCc
Confidence 64 788899999999987 8999999987533211 1 1688999999999886421110
Q ss_pred CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386 162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 215 (311)
Q Consensus 162 ~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR 215 (311)
. . .+.....++.+++.. ++||+++|||.+++++.++++. ||+|++||
T Consensus 153 ~-~-----~~~~~~~~~~~~~~~-~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 D-A-----VPIADLLLILAKRGS-KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred c-C-----chhHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 0 0 011124455666655 7999999999999999999987 99999997
No 65
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.46 E-value=2.5e-12 Score=117.05 Aligned_cols=187 Identities=9% Similarity=0.129 Sum_probs=127.3
Q ss_pred HhCCCcEEEecceecccccCCchhcccc--CCCCCCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccC
Q psy2386 14 QITRYSWLYTEMFTTQAILGNKKHCLDF--NAEEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG 89 (311)
Q Consensus 14 ~~g~~~l~~temv~a~~l~~~~~~~l~~--~~~~~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~ 89 (311)
..|...+.++-...+..--+....+++. ...+.| +|+.| .+++++.++ ...|++.|-+
T Consensus 41 ~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~p--v~~~GGi~s~~d~~~~----~~~Ga~~viv------------ 102 (254)
T TIGR00735 41 EEGADELVFLDITASSEGRTTMIDVVERTAETVFIP--LTVGGGIKSIEDVDKL----LRAGADKVSI------------ 102 (254)
T ss_pred HcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCC--EEEECCCCCHHHHHHH----HHcCCCEEEE------------
Confidence 4565567777776553211111112211 111333 45554 456655433 3468888866
Q ss_pred cccCcccCChHHHHHHHHHHh-ccc--cc-----ee------EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386 90 FFGAILMTKPLLVSDCIKAMR-DSV--EI-----DI------TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN 155 (311)
Q Consensus 90 ~~G~~Ll~~~~~~~~iv~~v~-~~~--~~-----pv------svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt 155 (311)
|+.++++|+++.++.+... +.+ ++ ++ -||+|.+++.... +..++++.+++.|++.|++|+++
T Consensus 103 --gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~--~~~~~~~~l~~~G~~~iivt~i~ 178 (254)
T TIGR00735 103 --NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGL--DAVEWAKEVEKLGAGEILLTSMD 178 (254)
T ss_pred --ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCC--CHHHHHHHHHHcCCCEEEEeCcC
Confidence 4677899999999988773 322 22 21 4788865543332 46799999999999999999987
Q ss_pred cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386 156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYY 232 (311)
Q Consensus 156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~ 232 (311)
. .|+. +.++|++++++++.+ ++||+++|||+|++|+.+++.. |||||+|++++..-.-+.++++.+.
T Consensus 179 ~--~g~~-------~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 179 K--DGTK-------SGYDLELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred c--ccCC-------CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 4 3322 236999999999997 7999999999999999999974 9999999999877666666665543
No 66
>KOG1436|consensus
Probab=99.40 E-value=3.1e-12 Score=116.11 Aligned_cols=177 Identities=14% Similarity=0.178 Sum_probs=125.6
Q ss_pred cCCCCCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--
Q psy2386 41 FNAEEHPIAFQVGDNE-----PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-- 113 (311)
Q Consensus 41 ~~~~~~p~~~Ql~g~~-----~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-- 113 (311)
..+...+++|.|+-+. ..++++-.+..-+. +|...||.+||+.. |-.-|+.-..+.+.+..+..+.
T Consensus 174 ~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtp------Glr~lq~k~~L~~ll~~v~~a~~~ 246 (398)
T KOG1436|consen 174 YPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTP------GLRSLQKKSDLRKLLTKVVQARDK 246 (398)
T ss_pred CCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCc------chhhhhhHHHHHHHHHHHHHHHhc
Confidence 3445566889886443 24455554444444 69999999999974 3333444344444444443322
Q ss_pred -----cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------ccccCCCCcCCCCCcCcHH
Q psy2386 114 -----EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------FLKKLNPKQNRKIPILKYN 175 (311)
Q Consensus 114 -----~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------~~~G~~g~~~~~~~~~~~~ 175 (311)
..||.+|+....... ++.+++..+.+.++|.+++.+.|- ..+|+||+ +.++...+
T Consensus 247 ~~~~~~~pvl~kiapDL~~~----el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~---plk~~st~ 319 (398)
T KOG1436|consen 247 LPLGKKPPVLVKIAPDLSEK----ELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGP---PLKPISTN 319 (398)
T ss_pred cccCCCCceEEEeccchhHH----HHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCC---ccchhHHH
Confidence 458999998754433 577888889999999998875441 14578887 44556677
Q ss_pred HHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhhh
Q psy2386 176 FVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLNY 231 (311)
Q Consensus 176 ~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~~ 231 (311)
.++++.+.+ ++||||++|||.|.+||.+.+.. |..|++++++ ++.|-++.+|++.+
T Consensus 320 ~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El 378 (398)
T KOG1436|consen 320 TVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKREL 378 (398)
T ss_pred HHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHH
Confidence 777777654 46999999999999999999876 9999999998 88899999887643
No 67
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.34 E-value=3.8e-11 Score=113.64 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=115.6
Q ss_pred CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc------------------cCccc-----
Q psy2386 45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF------------------GAILM----- 96 (311)
Q Consensus 45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~------------------G~~Ll----- 96 (311)
+.|...|+.- .|.+...+..++++.+||..|=+...+|..-.+ +.++ |....
T Consensus 124 ~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (351)
T cd04737 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAA 203 (351)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhh
Confidence 4589999995 577778888889999999999998877533221 0000 00000
Q ss_pred CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--ecCccccccCCCCcCCCCCcCcH
Q psy2386 97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKY 174 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~ 174 (311)
-++.+--+.++++++.+++||.|| |.. ..+.++.+.++|+|+|+| ||+.... ..+..+
T Consensus 204 ~~~~~~~~~l~~lr~~~~~PvivK---gv~-------~~~dA~~a~~~G~d~I~vsnhGGr~ld----------~~~~~~ 263 (351)
T cd04737 204 AKQKLSPADIEFIAKISGLPVIVK---GIQ-------SPEDADVAINAGADGIWVSNHGGRQLD----------GGPASF 263 (351)
T ss_pred ccCCCCHHHHHHHHHHhCCcEEEe---cCC-------CHHHHHHHHHcCCCEEEEeCCCCccCC----------CCchHH
Confidence 112334477788998889999999 221 146788999999999999 7654311 224678
Q ss_pred HHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386 175 NFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 175 ~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P 221 (311)
+.+.++++.+. ++|||++|||++..|+.+++.. ||+|||||+++...
T Consensus 264 ~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 264 DSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 89999988763 5999999999999999999987 99999999887643
No 68
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.33 E-value=6.7e-11 Score=105.01 Aligned_cols=154 Identities=18% Similarity=0.345 Sum_probs=119.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec-
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI- 123 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~- 123 (311)
..++-+|++|--- +.. .++.+.++|++.|-+ |+.-.+||+++.++++...+. +-|++-.|.
T Consensus 73 ~~~~~vQvGGGIR-s~~-~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g 134 (241)
T COG0106 73 ATDVPVQVGGGIR-SLE-DVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDG 134 (241)
T ss_pred hCCCCEEeeCCcC-CHH-HHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCC
Confidence 3466789987422 122 234455688887766 677789999999999998754 445555553
Q ss_pred -----cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC
Q psy2386 124 -----GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196 (311)
Q Consensus 124 -----g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~ 196 (311)
||.+.... .+.++++.+++.|+..+.+|. |..+++| .|++.+.++++.+ ++||+++|||.
T Consensus 135 ~vav~GW~e~s~~-~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G-----------~n~~l~~~l~~~~-~ipviaSGGv~ 201 (241)
T COG0106 135 KVAVSGWQEDSGV-ELEELAKRLEEVGLAHILYTDISRDGTLSG-----------PNVDLVKELAEAV-DIPVIASGGVS 201 (241)
T ss_pred ccccccccccccC-CHHHHHHHHHhcCCCeEEEEecccccccCC-----------CCHHHHHHHHHHh-CcCEEEecCcC
Confidence 67766554 478999999999999999985 4444444 5999999999999 89999999999
Q ss_pred CHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 197 TKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 197 s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
|.+|++.+.+. ++||.+|||+|.+-+-+.+..+
T Consensus 202 s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~ 236 (241)
T COG0106 202 SLDDIKALKELSGVEGVIVGRALYEGKFTLEEALA 236 (241)
T ss_pred CHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHH
Confidence 99999999874 9999999999999887766654
No 69
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.29 E-value=1.4e-10 Score=109.98 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=112.7
Q ss_pred CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----c-----------------CcccCcc-----cC
Q psy2386 45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----N-----------------GFFGAIL-----MT 97 (311)
Q Consensus 45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~-----------------~~~G~~L-----l~ 97 (311)
+.|.-.||.- .|.+...+..++++++||..|=|..=+|..-.+ + .+.+... ..
T Consensus 132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (367)
T TIGR02708 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSA 211 (367)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhcccc
Confidence 4689999987 567777888899999999999887665532111 0 0011100 01
Q ss_pred ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE--EecCccccccCCCCcCCCCCcCcHH
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI--VHARNAFLKKLNPKQNRKIPILKYN 175 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it--vh~Rt~~~~G~~g~~~~~~~~~~~~ 175 (311)
++.+--+-++++++.+++||.|| |.. ..+.++.+.++|+++|. .||+.. .+..++.|+
T Consensus 212 ~~~~~w~~i~~l~~~~~~PvivK---Gv~-------~~eda~~a~~~Gvd~I~VS~HGGrq----------~~~~~a~~~ 271 (367)
T TIGR02708 212 KQKLSPRDIEEIAGYSGLPVYVK---GPQ-------CPEDADRALKAGASGIWVTNHGGRQ----------LDGGPAAFD 271 (367)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEe---CCC-------CHHHHHHHHHcCcCEEEECCcCccC----------CCCCCcHHH
Confidence 12222356788888889999999 322 14678999999999875 576542 223457899
Q ss_pred HHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 176 FVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 176 ~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
.+.++++.+ .++|||++|||++..|+.+++.. ||+|||||+++.
T Consensus 272 ~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 272 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999877 35999999999999999999987 999999999854
No 70
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.29 E-value=8.5e-11 Score=109.77 Aligned_cols=136 Identities=11% Similarity=0.186 Sum_probs=106.0
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.|+.+.++...|. +.+..+.+.+.|++.|.++.|.|. ++++.+++. +++|...+..
T Consensus 62 ~~pfgvn~~~~~~~-~~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~s- 118 (307)
T TIGR03151 62 DKPFGVNIMLLSPF-VDELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVAS- 118 (307)
T ss_pred CCCcEEeeecCCCC-HHHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcCC-
Confidence 57999998876554 344456666789999998776652 456667665 7777655421
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~ 204 (311)
.+.++.++++|+|.|++||+. .+|+.|. ..+|.++.++++.+ ++|||++|||.+++++.++
T Consensus 119 ----------~~~a~~a~~~GaD~Ivv~g~e--agGh~g~------~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~a 179 (307)
T TIGR03151 119 ----------VALAKRMEKAGADAVIAEGME--SGGHIGE------LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAA 179 (307)
T ss_pred ----------HHHHHHHHHcCCCEEEEECcc--cCCCCCC------CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHH
Confidence 467899999999999999996 4565442 13799999999998 7999999999999999999
Q ss_pred Hhh-cCEEEEehhhhhCCc
Q psy2386 205 LNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 205 l~~-adgVmigRa~l~~P~ 222 (311)
+.. |||||+|+.++.-+.
T Consensus 180 l~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 180 FALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHcCCCEeecchHHhcccc
Confidence 987 999999999876553
No 71
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.25 E-value=4.9e-10 Score=105.48 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=122.8
Q ss_pred CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC 81 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC 81 (311)
++|+..|...+.+.|.-++...+|.. +.+.. ..+..+ +.+.+.+..|.+++....+.. +.++|+|.|+||++.
T Consensus 44 ~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~-~i~~vk----~~l~v~~~~~~~~~~~~~~~~-l~eagv~~I~vd~~~ 116 (325)
T cd00381 44 TVTESEMAIAMARLGGIGVIHRNMSI-EEQAE-EVRKVK----GRLLVGAAVGTREDDKERAEA-LVEAGVDVIVIDSAH 116 (325)
T ss_pred cCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHH-HHHHhc----cCceEEEecCCChhHHHHHHH-HHhcCCCEEEEECCC
Confidence 57899998877777755677666532 22210 001111 345666777877776665554 445799999998643
Q ss_pred CccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc
Q psy2386 82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK 160 (311)
Q Consensus 82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G 160 (311)
| +++.+.++++.+++... +||.+ |... ..+.++.+.++|+|+|.++.... ...
T Consensus 117 ----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~v~------t~~~A~~l~~aGaD~I~vg~g~G-~~~ 170 (325)
T cd00381 117 ----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GNVV------TAEAARDLIDAGADGVKVGIGPG-SIC 170 (325)
T ss_pred ----------C-----CcHHHHHHHHHHHHHCCCceEEE----CCCC------CHHHHHHHHhcCCCEEEECCCCC-cCc
Confidence 1 22566788888888652 44443 3221 25778999999999999964321 000
Q ss_pred CCCCcCCCCCcCcHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 161 LNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 161 ~~g~~~~~~~~~~~~~i~~i~~~~~--~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
. +......+...|..+.++.+... ++|||++|||.++.|+.++++. ||+||+||.+..-..
T Consensus 171 ~-t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 171 T-TRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred c-cceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence 0 00111223357777777766542 5999999999999999999987 999999999977553
No 72
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.22 E-value=5.6e-10 Score=101.05 Aligned_cols=153 Identities=13% Similarity=0.184 Sum_probs=115.4
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC----hHHHHHHHHHH-hccccceeEEE
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK----PLLVSDCIKAM-RDSVEIDITVK 120 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~----~~~~~~iv~~v-~~~~~~pvsvK 120 (311)
.++-+|++|-=- . +.++.+-+.|++-|-|| +...+| |+++.++++.. .+.+-+.+.+|
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k 144 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCR 144 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEE
Confidence 347799998764 3 56667778899999886 556677 99999999998 44433333343
Q ss_pred E--------eccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386 121 H--------RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 190 (311)
Q Consensus 121 i--------R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi 190 (311)
. --||...... .+.+++..+.+.|+..|.++. |..+++| .|.+.++++++.+ ++|||
T Consensus 145 ~~~g~~~Va~~GW~~~t~~-~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-----------~d~el~~~l~~~~-~ipVI 211 (262)
T PLN02446 145 KKDGRYYVVTDRWQKFSDL-AVDEETLEFLAAYCDEFLVHGVDVEGKRLG-----------IDEELVALLGEHS-PIPVT 211 (262)
T ss_pred ecCCCEEEEECCCcccCCC-CHHHHHHHHHHhCCCEEEEEEEcCCCcccC-----------CCHHHHHHHHhhC-CCCEE
Confidence 1 1256554333 467889999999999999884 4444444 5899999999997 89999
Q ss_pred EecCCCCHHHHHHHHhh---cCEEEEehhh--hhCCcchHHhH
Q psy2386 191 INGGIKTKKEIDLHLNY---IDGVMLGREA--YKNPFLMSNFD 228 (311)
Q Consensus 191 ~nGgI~s~~da~~~l~~---adgVmigRa~--l~~P~i~~~~~ 228 (311)
++|||.|.+|+.++... +.+|.+|+++ |.+-.-+.++.
T Consensus 212 ASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~ 254 (262)
T PLN02446 212 YAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVV 254 (262)
T ss_pred EECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHH
Confidence 99999999999998863 6899999999 77766555543
No 73
>KOG1799|consensus
Probab=99.20 E-value=1.3e-11 Score=113.38 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=129.1
Q ss_pred eEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386 48 IAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID 126 (311)
Q Consensus 48 ~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~ 126 (311)
+|.+++. ++...|.+.+...+++|.|..|+|+.||...- .+|+|.++-++|..+.||...++..+.+|+.-|+.....
T Consensus 207 mIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~-ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNit 285 (471)
T KOG1799|consen 207 MIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMC-ERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNIT 285 (471)
T ss_pred eehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCc-cccccceeccChhhhHHHhhhhhhccccccccccCCCcc
Confidence 4444433 56778889999999999999999999999864 447999999999999999999999999999999998766
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEE---------------------EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386 127 DINSYDFVRDFVGTVSSAGCRTFI---------------------VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP 185 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G~~~it---------------------vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~ 185 (311)
+. .+.++.....|+..|+ +.+|+. ++|||++ .++|..+..+..|++...
T Consensus 286 d~------revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT-~GG~S~~---AvRPIAl~~V~~IA~~m~ 355 (471)
T KOG1799|consen 286 DK------REVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYST-PGGYSYK---AVRPIALAKVMNIAKMMK 355 (471)
T ss_pred cc------cccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccC-CCCcccc---ccchHHHHHHHHHHHHhh
Confidence 53 4566777777777665 234443 7788877 455667777777777665
Q ss_pred CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 186 ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 186 ~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
..|+.+.|||.|.+|+.+++-. +.-|++.+|.+-.-+
T Consensus 356 ~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~ 393 (471)
T KOG1799|consen 356 EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGY 393 (471)
T ss_pred cCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCc
Confidence 6899999999999999998865 777888887765544
No 74
>KOG0134|consensus
Probab=99.20 E-value=1.6e-10 Score=109.08 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEecc-
Q psy2386 57 PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIG- 124 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g- 124 (311)
.+-++.||+.+.++|||+||||-. .|..|-+.+.||+++.++-+++.|++++|++.++ .+..+-.+.+
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 366888888888999999999943 7999999999999999999999999999999873 2222222211
Q ss_pred -CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCC-CCcCCCCCcC----cHHHHHHHHHhCCCCe-EEEecCCCC
Q psy2386 125 -IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN-PKQNRKIPIL----KYNFVYNLKKDFPELE-IIINGGIKT 197 (311)
Q Consensus 125 -~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~-g~~~~~~~~~----~~~~i~~i~~~~~~ip-vi~nGgI~s 197 (311)
.+...+.++...++..+++.|+|.+-+.|++.. -++ ..+.+..-+. ..++...++..+ +.| |.++|+.++
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~--~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~-kgt~v~a~g~~~t 329 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFL--AYVHFIEPRQSTIAREAFFVEFAETIRPVF-KGTVVYAGGGGRT 329 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhh--hhhhhccccccccccccchhhhhhHHHHHh-cCcEEEecCCccC
Confidence 011112234567889999999996655544320 011 0111221111 234556667666 455 557789999
Q ss_pred HHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386 198 KKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 198 ~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~ 230 (311)
.+.+.+.++. .|+|..||.++.||.+..++...
T Consensus 330 ~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 330 REAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred HHHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 9999999986 99999999999999999998753
No 75
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.19 E-value=1.4e-09 Score=102.87 Aligned_cols=161 Identities=18% Similarity=0.249 Sum_probs=114.3
Q ss_pred CCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-------------------cCcc---c
Q psy2386 44 EEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF-------------------GAIL---M 96 (311)
Q Consensus 44 ~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~-------------------G~~L---l 96 (311)
.+.|+.+||. ..|.+...+..++++.+||+.|-|+.-.|..-.+ +.++ +... .
T Consensus 116 ~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 195 (344)
T cd02922 116 PDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGF 195 (344)
T ss_pred CCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhc
Confidence 3568999996 6688889999999999999999999888843211 1110 0010 1
Q ss_pred CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386 97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~ 176 (311)
.++....+.++.+++.++.||.|| +... .+-++.+.++|+|+|.|.+.-...- .... .-++.
T Consensus 196 ~~~~~~~~~i~~l~~~~~~PvivK---gv~~-------~~dA~~a~~~G~d~I~vsnhgG~~~------d~~~--~~~~~ 257 (344)
T cd02922 196 IDPTLTWDDIKWLRKHTKLPIVLK---GVQT-------VEDAVLAAEYGVDGIVLSNHGGRQL------DTAP--APIEV 257 (344)
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEE---cCCC-------HHHHHHHHHcCCCEEEEECCCcccC------CCCC--CHHHH
Confidence 234566678899999999999999 3322 4667889999999999965322110 0111 12344
Q ss_pred HHHHHH---hC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 177 VYNLKK---DF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 177 i~~i~~---~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
+.++++ .+ .++|||+.|||++..|+.+++.. ||+|+|||+++..+.
T Consensus 258 L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 258 LLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 555544 22 25999999999999999999987 999999999987653
No 76
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.16 E-value=1.6e-10 Score=104.40 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.|++|.++. .|. .++.+++.++++++.+ ++||+++|||+|.+|+.+++.. ||+|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~--~~~-------~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v 97 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITA--SSE-------GRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKV 97 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCc--ccc-------cCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceE
Confidence 468999999999999999999975 221 2346999999999998 7999999999999999999976 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
++||+++.||+++.++.+.+
T Consensus 98 ~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 98 SINSAAVENPELIREIAKRF 117 (243)
T ss_pred EECchhhhChHHHHHHHHHc
Confidence 99999999999999998764
No 77
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.16 E-value=1.6e-10 Score=105.09 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..++++.+++.|++.+++|.+++...+ .+.+|+.++++++.+ ++||+++|||+|.+|+++++.. ||+|+
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEG---------RDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccc---------CcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence 579999999999999999999862111 136999999999998 8999999999999999999987 99999
Q ss_pred EehhhhhCCcchHHhHhhh
Q psy2386 213 LGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 213 igRa~l~~P~i~~~~~~~~ 231 (311)
+|++++.||+++.++.+.+
T Consensus 102 igt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 102 INSAAVANPELISEAADRF 120 (253)
T ss_pred EChhHhhCcHHHHHHHHHc
Confidence 9999999999999998764
No 78
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.14 E-value=1.9e-09 Score=97.49 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=110.7
Q ss_pred CCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe-
Q psy2386 46 HPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR- 122 (311)
Q Consensus 46 ~p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR- 122 (311)
.++-+|++|- +.++. +.+.+.|++-|-+ |+...++|+++.++.+...+.+ -|++-.+
T Consensus 73 ~~~~v~vgGGIrs~e~~----~~~l~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~i--vvslD~k~ 132 (243)
T TIGR01919 73 LVVVEELSGGRRDDSSL----RAALTGGRARVNG--------------GTAALENPWWAAAVIRYGGDIV--AVGLDVLE 132 (243)
T ss_pred CCCCEEEcCCCCCHHHH----HHHHHcCCCEEEE--------------CchhhCCHHHHHHHHHHccccE--EEEEEEec
Confidence 3466788763 45543 3344578888765 4677899999999988875443 3444333
Q ss_pred ---------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386 123 ---------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 191 (311)
Q Consensus 123 ---------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~ 191 (311)
.||.... . .+.++++.+++.|+..+.++. |..+.+| .|++.++++++.. ++|||+
T Consensus 133 ~g~~~~v~~~Gw~~~~-~-~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G-----------~d~~l~~~l~~~~-~~pvia 198 (243)
T TIGR01919 133 DGEWHTLGNRGWSDGG-G-DLEVLERLLDSGGCSRVVVTDSKKDGLSGG-----------PNELLLEVVAART-DAIVAA 198 (243)
T ss_pred CCceEEEECCCeecCC-C-cHHHHHHHHHhCCCCEEEEEecCCcccCCC-----------cCHHHHHHHHhhC-CCCEEE
Confidence 2565522 2 578999999999999999985 4443444 5999999999986 899999
Q ss_pred ecCCCCHHHHHHHH--h--hcCEEEEehhhhhCCcchHHhH
Q psy2386 192 NGGIKTKKEIDLHL--N--YIDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 192 nGgI~s~~da~~~l--~--~adgVmigRa~l~~P~i~~~~~ 228 (311)
+|||.|.+|+.++- . .++||++|++++.+-.-+.++.
T Consensus 199 sGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~~ 239 (243)
T TIGR01919 199 SGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAAL 239 (243)
T ss_pred ECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHHH
Confidence 99999999999873 2 3999999999999887776654
No 79
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.12 E-value=1.8e-09 Score=97.80 Aligned_cols=154 Identities=12% Similarity=0.175 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHH-----HHHHHHhccccceeE--EEEeccCCC
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS-----DCIKAMRDSVEIDIT--VKHRIGIDD 127 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~-----~iv~~v~~~~~~pvs--vKiR~g~~~ 127 (311)
.+++.+.++++.+++. +|.||||+-||.+. .-|..+.+.++.+. ++++++++.+++|+. +|+.....
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~----adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~- 88 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK----YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD- 88 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh-
Confidence 4789999999999887 99999999999885 23566667777777 899999988899973 55554211
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEecC-----------------------------cc---------ccc-----cCCCC
Q psy2386 128 INSYDFVRDFVGTVSSAGCRTFIVHAR-----------------------------NA---------FLK-----KLNPK 164 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~~G~~~itvh~R-----------------------------t~---------~~~-----G~~g~ 164 (311)
...++++.+.++|++.+++|.- |. ... +..|.
T Consensus 89 -----~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~ 163 (244)
T PRK13125 89 -----SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA 163 (244)
T ss_pred -----CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC
Confidence 2356788888888888888731 10 000 10110
Q ss_pred cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
......+.-.+.++++++..++.||+.-|||++++++.++++. ||+|.+|++++.
T Consensus 164 ~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 164 TGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0000111113578888887655899999999999999998876 999999999864
No 80
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.11 E-value=2.2e-09 Score=96.91 Aligned_cols=146 Identities=13% Similarity=0.241 Sum_probs=107.2
Q ss_pred EEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec----
Q psy2386 50 FQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---- 123 (311)
Q Consensus 50 ~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---- 123 (311)
+|++|. +.++. +.+.+.|++-|=| |+..++||+++.++ ...-+. +-+++-+|-
T Consensus 76 v~vGGGIrs~e~~----~~~l~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~ 134 (241)
T PRK14114 76 IQIGGGIRSLDYA----EKLRKLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA 134 (241)
T ss_pred EEEecCCCCHHHH----HHHHHCCCCEEEE--------------CchhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence 577663 33433 3344567777655 46778999999999 444332 445555442
Q ss_pred --cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386 124 --GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 124 --g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
||...... .+.++++.+++.|+..+.+.. |..+.+| .|++.++++++.. ++|||++|||.|.+
T Consensus 135 ~~gw~~~~~~-~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-----------~d~el~~~l~~~~-~~pviasGGv~s~~ 201 (241)
T PRK14114 135 FKGWLAEEEI-DPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTRKIAIEA-EVKVFAAGGISSEN 201 (241)
T ss_pred eCCCeecCCC-CHHHHHHHHHhcCCCEEEEEeechhhcCCC-----------cCHHHHHHHHHHC-CCCEEEECCCCCHH
Confidence 55443332 468999999999999999874 4444444 4999999999986 89999999999999
Q ss_pred HHHHHHh------h-cCEEEEehhhhhCCcchHHhHh
Q psy2386 200 EIDLHLN------Y-IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 200 da~~~l~------~-adgVmigRa~l~~P~i~~~~~~ 229 (311)
|+.++.+ . ++||.+|++++.+-.-+.++++
T Consensus 202 Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~ 238 (241)
T PRK14114 202 SLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKR 238 (241)
T ss_pred HHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHH
Confidence 9999876 4 9999999999988877766654
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.11 E-value=1.4e-09 Score=96.70 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=93.8
Q ss_pred HHHHHHcCCCEEEeccCCCccccccCcccCcccCChH--HHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL--LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~--~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l 141 (311)
++.+.++|+|.|-++..+ ..+|+ .+.++++.+++..++|+.+.+.. .+.+..+
T Consensus 85 ~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t-----------~~ea~~a 139 (219)
T cd04729 85 VDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIST-----------LEEALNA 139 (219)
T ss_pred HHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECCC-----------HHHHHHH
Confidence 366778899999887432 12232 67788888877656888775431 2446778
Q ss_pred HHcCCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 142 SSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 142 ~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l 218 (311)
.+.|++++.+ ||++... ......+++.++++++.+ ++||+++|||.|++++.++++. ||+|++|++++
T Consensus 140 ~~~G~d~i~~~~~g~t~~~--------~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~ 210 (219)
T cd04729 140 AKLGFDIIGTTLSGYTEET--------AKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT 210 (219)
T ss_pred HHcCCCEEEccCccccccc--------cCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 8999999965 4554311 011235789999999988 8999999999999999999987 99999999987
Q ss_pred hCCcch
Q psy2386 219 KNPFLM 224 (311)
Q Consensus 219 ~~P~i~ 224 (311)
...++.
T Consensus 211 ~~~~~~ 216 (219)
T cd04729 211 RPEHIT 216 (219)
T ss_pred ChHhHh
Confidence 665543
No 82
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.10 E-value=3.3e-09 Score=96.17 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=125.4
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEecceec-----cccc--CCchhcccc-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCC
Q psy2386 1 MNLTDRHCRMFHRQITRYSWLYTEMFTT-----QAIL--GNKKHCLDF-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY 72 (311)
Q Consensus 1 ~~~td~~fR~l~~~~g~~~l~~temv~a-----~~l~--~~~~~~l~~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~ 72 (311)
|++++..=-.++.+-|+++...-|-+.+ .++. +....+-.. ..-+.|++-=+- ..+..-|+.+.++|+
T Consensus 13 ~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K----~~~~~Ea~~L~eaGv 88 (283)
T cd04727 13 MDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVR----IGHFVEAQILEALGV 88 (283)
T ss_pred EEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeee----hhHHHHHHHHHHcCC
Confidence 6788888889999999887777554443 3443 222111111 123667664332 233444567788999
Q ss_pred CEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386 73 DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH 152 (311)
Q Consensus 73 d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh 152 (311)
|.|| |-. -.+| +.+++..+|+..+.|+..-++. .+=+.+..+.|+|+|--+
T Consensus 89 DiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st-----------leEal~a~~~Gad~I~TT 139 (283)
T cd04727 89 DMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN-----------LGEALRRISEGAAMIRTK 139 (283)
T ss_pred CEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC-----------HHHHHHHHHCCCCEEEec
Confidence 9997 211 1233 5778888888779999887664 345677889999999433
Q ss_pred --cCccc-----------------cccCCCCcC---CCCCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-
Q psy2386 153 --ARNAF-----------------LKKLNPKQN---RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY- 207 (311)
Q Consensus 153 --~Rt~~-----------------~~G~~g~~~---~~~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~- 207 (311)
|-|.. ..||+.... .....++|+.++++++.. ++||+ +.|||.|++++.++++.
T Consensus 140 l~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~G 218 (283)
T cd04727 140 GEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLG 218 (283)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcC
Confidence 33321 134432211 112346999999999988 79997 99999999999999987
Q ss_pred cCEEEEehhhhh
Q psy2386 208 IDGVMLGREAYK 219 (311)
Q Consensus 208 adgVmigRa~l~ 219 (311)
||+|++|++++.
T Consensus 219 AdgVaVGSAI~~ 230 (283)
T cd04727 219 ADGVFVGSGIFK 230 (283)
T ss_pred CCEEEEcHHhhc
Confidence 999999999985
No 83
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.09 E-value=3.4e-09 Score=99.25 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=101.2
Q ss_pred EEEec-CCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEE-Eecc
Q psy2386 49 AFQVG-DNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVK-HRIG 124 (311)
Q Consensus 49 ~~Ql~-g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvK-iR~g 124 (311)
++.+. |.+++.+.++.++++. .|+|.|-|.+.-|. .+.+.++++.+++..+ +||.+| +-
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh---------------~~~~~e~I~~ir~~~p~~~vi~g~V~-- 149 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGH---------------SDSVINMIQHIKKHLPETFVIAGNVG-- 149 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCc---------------hHHHHHHHHHHHhhCCCCeEEEEecC--
Confidence 44444 5567888887776653 24599999754432 3667888999999874 888886 33
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHH--HHHHHHhCCCCeEEEecCCCCHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNF--VYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~--i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
..+-++.+.++|+|++.++ ||....+- .......+|.+ ++++++.+ ++|||++|||+++.
T Consensus 150 ---------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~-----~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~ 214 (326)
T PRK05458 150 ---------TPEAVRELENAGADATKVGIGPGKVCITKI-----KTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHG 214 (326)
T ss_pred ---------CHHHHHHHHHcCcCEEEECCCCCccccccc-----ccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHH
Confidence 1466889999999999887 33311110 01112357775 88999887 79999999999999
Q ss_pred HHHHHHhh-cCEEEEehhhhh
Q psy2386 200 EIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 200 da~~~l~~-adgVmigRa~l~ 219 (311)
|+.+++.. ||+||+|+++.+
T Consensus 215 Di~KaLa~GA~aV~vG~~~~~ 235 (326)
T PRK05458 215 DIAKSIRFGATMVMIGSLFAG 235 (326)
T ss_pred HHHHHHHhCCCEEEechhhcC
Confidence 99999987 999999999874
No 84
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.06 E-value=6.1e-09 Score=97.68 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=119.2
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK 120 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK 120 (311)
.....|+..|+++.+|+.+.+.++.+.+.||+.|.||+|. +++...++++++++.+ ++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD 183 (316)
T cd03319 120 APRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVD 183 (316)
T ss_pred CCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEe
Confidence 4456788899999999999999998888999999999763 2355567888888876 4789999
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
.+.+|+.. +..++++.+++.|+.+|- +. .++.||+.++++++.. ++||++++.+.++++
T Consensus 184 ~n~~~~~~----~A~~~~~~l~~~~l~~iE---------------eP-~~~~d~~~~~~L~~~~-~ipIa~~E~~~~~~~ 242 (316)
T cd03319 184 ANQGWTPE----EAVELLRELAELGVELIE---------------QP-VPAGDDDGLAYLRDKS-PLPIMADESCFSAAD 242 (316)
T ss_pred CCCCcCHH----HHHHHHHHHHhcCCCEEE---------------CC-CCCCCHHHHHHHHhcC-CCCEEEeCCCCCHHH
Confidence 99888863 468999999999998882 11 1235899999999987 799999999999999
Q ss_pred HHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386 201 IDLHLNY--IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 201 a~~~l~~--adgVmigRa~l~~P~i~~~~~ 228 (311)
+.++++. +|.|++--.-.+...=+.++.
T Consensus 243 ~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~ 272 (316)
T cd03319 243 AARLAGGGAYDGINIKLMKTGGLTEALRIA 272 (316)
T ss_pred HHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence 9999985 999998755555444344443
No 85
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.06 E-value=2.2e-09 Score=96.30 Aligned_cols=144 Identities=17% Similarity=0.340 Sum_probs=100.7
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc--
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-- 124 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-- 124 (311)
++-+|++|.= ..+.++ +.+.+.|++-|=| |+..++||+++.++.+..-+. .+-+++-+|.|
T Consensus 73 ~~~i~vgGGI-rs~ed~-~~ll~~Ga~~Vvi--------------gt~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~ 135 (229)
T PF00977_consen 73 GIPIQVGGGI-RSIEDA-ERLLDAGADRVVI--------------GTEALEDPELLEELAERYGSQ-RIVVSLDARDGYK 135 (229)
T ss_dssp SSEEEEESSE--SHHHH-HHHHHTT-SEEEE--------------SHHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEE
T ss_pred CccEEEeCcc-CcHHHH-HHHHHhCCCEEEe--------------ChHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceE
Confidence 3667777641 122222 3344567776655 467889999999999988663 24445544444
Q ss_pred -----CCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 125 -----IDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 125 -----~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
|...... .+.++++.+++.|+..+.++.- ..+.+| .|++.++++++.+ ++|||++|||.|
T Consensus 136 v~~~gw~~~~~~-~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-----------~d~~~~~~l~~~~-~~~viasGGv~~ 202 (229)
T PF00977_consen 136 VATNGWQESSGI-DLEEFAKRLEELGAGEIILTDIDRDGTMQG-----------PDLELLKQLAEAV-NIPVIASGGVRS 202 (229)
T ss_dssp EEETTTTEEEEE-EHHHHHHHHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS--S
T ss_pred EEecCccccCCc-CHHHHHHHHHhcCCcEEEEeeccccCCcCC-----------CCHHHHHHHHHHc-CCCEEEecCCCC
Confidence 5543222 4689999999999999998854 333344 5899999999988 899999999999
Q ss_pred HHHHHHHHhh-cCEEEEehhhhhC
Q psy2386 198 KKEIDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 198 ~~da~~~l~~-adgVmigRa~l~~ 220 (311)
.+|+.++... +|+|++|++++.+
T Consensus 203 ~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 203 LEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp HHHHHHHHHTTECEEEESHHHHTT
T ss_pred HHHHHHHHHCCCcEEEEehHhhCC
Confidence 9999999976 9999999999765
No 86
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.05 E-value=1.1e-08 Score=92.86 Aligned_cols=141 Identities=20% Similarity=0.219 Sum_probs=101.5
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 142 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~ 142 (311)
-|++++++|+-.|------|... ++ ..|-+-+++|+.+.+| ++.+++||.-|+|.|. ..=++.|+
T Consensus 22 qa~iae~aga~avm~le~~p~d~-r~-~ggv~R~~~p~~I~~I----~~~V~iPVig~~kigh---------~~Ea~~L~ 86 (287)
T TIGR00343 22 QAKIAEEAGAVAVMALERVPADI-RA-SGGVARMSDPKMIKEI----MDAVSIPVMAKVRIGH---------FVEAQILE 86 (287)
T ss_pred HHHHHHHcCceEEEeeccCchhh-Hh-cCCeeecCCHHHHHHH----HHhCCCCEEEEeeccH---------HHHHHHHH
Confidence 46888999987776655667764 33 3577889999986655 4457999999999873 23367777
Q ss_pred HcCCCEEEEecCcc----------------------------------------ccccCCCC------------------
Q psy2386 143 SAGCRTFIVHARNA----------------------------------------FLKKLNPK------------------ 164 (311)
Q Consensus 143 ~~G~~~itvh~Rt~----------------------------------------~~~G~~g~------------------ 164 (311)
+.|+|+|--+-|.. ...||+|.
T Consensus 87 ~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 87 ALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred HcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHH
Confidence 78887775221100 01233332
Q ss_pred ----cC------CCCCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 165 ----QN------RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 165 ----~~------~~~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
.. .....++++.++++++.. ++||+ +.|||.|++|+..+++. ||||++|++++.
T Consensus 167 ~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 167 QNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred hcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 00 011236899999999987 79998 99999999999999987 999999999985
No 87
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.02 E-value=1.5e-09 Score=97.20 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.++||.+++.+.+ .+.+++.++++++.+ ++||+++|||+|+++++++++. ||.|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~---------~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGG---------EPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccC---------CCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3579999999999999999988763222 236899999999998 7999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
++|++++.+|+++.++.+.+
T Consensus 100 vigs~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 100 IIGTAAVKNPELVKELLKEY 119 (234)
T ss_pred EECchHHhChHHHHHHHHHc
Confidence 99999999999999988764
No 88
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.02 E-value=9.1e-09 Score=91.64 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=93.0
Q ss_pred HHHHHHcCCCEEEeccCCCccccccCcccCcccCCh--HHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP--LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~--~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l 141 (311)
++.+.++|+|.|-+.. |. ...| +.+.++++.+++..++|+.+.+. + .+.++.+
T Consensus 81 v~~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-------t----~ee~~~a 135 (221)
T PRK01130 81 VDALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS-------T----LEEGLAA 135 (221)
T ss_pred HHHHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC-------C----HHHHHHH
Confidence 4666788999887742 21 1123 56678888887744677776432 1 2445788
Q ss_pred HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386 142 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 142 ~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~ 220 (311)
.+.|+|++.++.+.. .+ ... ...+.+++.++++++.+ ++||++.|||.|++++.++++. ||+|++|++++..
T Consensus 136 ~~~G~d~i~~~~~g~--t~---~~~-~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~ 208 (221)
T PRK01130 136 QKLGFDFIGTTLSGY--TE---ETK-KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP 208 (221)
T ss_pred HHcCCCEEEcCCcee--ec---CCC-CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence 999999998753311 11 000 12235789999999998 8999999999999999999987 9999999998765
Q ss_pred CcchHHhH
Q psy2386 221 PFLMSNFD 228 (311)
Q Consensus 221 P~i~~~~~ 228 (311)
++..+++.
T Consensus 209 ~~~~~~~~ 216 (221)
T PRK01130 209 EEITKWFV 216 (221)
T ss_pred HHHHHHHH
Confidence 55544443
No 89
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.01 E-value=2.2e-08 Score=86.69 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=113.5
Q ss_pred CCCeEEEecCCC----HHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccc--cce
Q psy2386 45 EHPIAFQVGDNE----PKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EID 116 (311)
Q Consensus 45 ~~p~~~Ql~g~~----~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~p 116 (311)
..|+++++..++ .++..+.++.+.++|+|+|.+. .+++.. .+++.+.+.++++.+.+ ++|
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~------------~~~~~~~~~~~~i~~~~~~~~p 115 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKE------------GDWEEVLEEIAAVVEAADGGLP 115 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhC------------CCHHHHHHHHHHHHHHhcCCce
Confidence 578999999988 8999999999999999999984 332221 15788888888988874 899
Q ss_pred eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCC
Q psy2386 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGI 195 (311)
Q Consensus 117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI 195 (311)
+.++...+.. .+.+.+.++++.+.+.|++.|..+.... . +..+++.++++++..+ ++||+..||+
T Consensus 116 v~iy~~p~~~--~~~~~~~~~~~~~~~~g~~~iK~~~~~~--~----------~~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 116 LKVILETRGL--KTADEIAKAARIAAEAGADFIKTSTGFG--G----------GGATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEeCCCCC--C----------CCCCHHHHHHHHHhcccCCcEEEECCC
Confidence 9999998766 1233466677778889999998764321 1 1258888999988764 5899999999
Q ss_pred CCHHHHHHHHhh-cCEEEEe
Q psy2386 196 KTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 196 ~s~~da~~~l~~-adgVmig 214 (311)
.+++.+.+.+.. |+|+++|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 999999999986 9999875
No 90
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.01 E-value=1.2e-08 Score=91.88 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=102.6
Q ss_pred EEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe----
Q psy2386 49 AFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR---- 122 (311)
Q Consensus 49 ~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR---- 122 (311)
=+|++|. +.++ ++.+-++|++-|=| |+..++||+++.++.+...+. +-|++-.+
T Consensus 78 pi~vGGGIrs~e~----v~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v 137 (234)
T PRK13587 78 DIEVGGGIRTKSQ----IMDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDI 137 (234)
T ss_pred eEEEcCCcCCHHH----HHHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEE
Confidence 3777663 3443 23444578877655 577789999999999887543 33444433
Q ss_pred --ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386 123 --IGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198 (311)
Q Consensus 123 --~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~ 198 (311)
.||.+.... .+.++++.+++.|+..+.+..- ..+.+| .|++.++++.+.. ++||++.|||+|+
T Consensus 138 ~~~gw~~~~~~-~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-----------~~~~li~~l~~~~-~ipvi~~GGi~s~ 204 (234)
T PRK13587 138 KVNGWEEDTEL-NLFSFVRQLSDIPLGGIIYTDIAKDGKMSG-----------PNFELTGQLVKAT-TIPVIASGGIRHQ 204 (234)
T ss_pred EecCCcccCCC-CHHHHHHHHHHcCCCEEEEecccCcCCCCc-----------cCHHHHHHHHHhC-CCCEEEeCCCCCH
Confidence 256543332 4689999999999999888643 333333 5899999999886 8999999999999
Q ss_pred HHHHHHHhh-cCEEEEehhhhh
Q psy2386 199 KEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 199 ~da~~~l~~-adgVmigRa~l~ 219 (311)
+|+.++++. +++|.+|++++.
T Consensus 205 edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 205 QDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHHcCCCEEEEhHHHHh
Confidence 999999976 999999999987
No 91
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.01 E-value=7.2e-09 Score=88.86 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=90.1
Q ss_pred HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 144 (311)
Q Consensus 65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~ 144 (311)
+.+.++|+|.|-|-+ ..=.+|+.+.++++.+++.. .++..-+.. .|=+..+.++
T Consensus 58 ~~l~~aGadIIAlDa--------------T~R~Rp~~l~~li~~i~~~~-~l~MADist-----------~ee~~~A~~~ 111 (192)
T PF04131_consen 58 DALAEAGADIIALDA--------------TDRPRPETLEELIREIKEKY-QLVMADIST-----------LEEAINAAEL 111 (192)
T ss_dssp HHHHHCT-SEEEEE---------------SSSS-SS-HHHHHHHHHHCT-SEEEEE-SS-----------HHHHHHHHHT
T ss_pred HHHHHcCCCEEEEec--------------CCCCCCcCHHHHHHHHHHhC-cEEeeecCC-----------HHHHHHHHHc
Confidence 445568999998863 12256688999999999987 788876653 4557888999
Q ss_pred CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386 145 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i 223 (311)
|+|.| +-| +.||.+.... ...||++++++++. ++|||+-|+|+||+++.++++. |++|.||.+.-.--++
T Consensus 112 G~D~I---~TT--LsGYT~~t~~--~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~I 182 (192)
T PF04131_consen 112 GFDII---GTT--LSGYTPYTKG--DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQEI 182 (192)
T ss_dssp T-SEE---E-T--TTTSSTTSTT--SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHH
T ss_pred CCCEE---Ecc--cccCCCCCCC--CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHHHH
Confidence 99999 444 6777654333 44699999999985 6999999999999999999987 9999999877443334
Q ss_pred hHHhHh
Q psy2386 224 MSNFDL 229 (311)
Q Consensus 224 ~~~~~~ 229 (311)
.+++.+
T Consensus 183 t~~F~~ 188 (192)
T PF04131_consen 183 TKRFVD 188 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 92
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.99 E-value=2.3e-09 Score=97.66 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.|+++..++... ....+++.++++++.+ ++||++.|||+|.+|+.+++.. |++|
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~---------~~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~v 100 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSE---------GRTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKV 100 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccc---------cChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 357999999999999999998875211 1236899999999998 8999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
++|++++.||+++.++.+.+
T Consensus 101 ivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 101 SINTAAVKNPELIYELADRF 120 (254)
T ss_pred EEChhHhhChHHHHHHHHHc
Confidence 99999999999999988754
No 93
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.91 E-value=1e-07 Score=84.68 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=101.9
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.|++++=+..++.+ ++.+.++|+|+|-+. ...+ .++.+.++++..+. .++.+.+-+. +
T Consensus 72 ~iPi~~~~~i~~~~~----v~~~~~~Gad~v~l~--------------~~~~-~~~~~~~~~~~~~~-~g~~~~v~v~-~ 130 (217)
T cd00331 72 SLPVLRKDFIIDPYQ----IYEARAAGADAVLLI--------------VAAL-DDEQLKELYELARE-LGMEVLVEVH-D 130 (217)
T ss_pred CCCEEECCeecCHHH----HHHHHHcCCCEEEEe--------------eccC-CHHHHHHHHHHHHH-cCCeEEEEEC-C
Confidence 678877655577753 455668999999885 1112 23677778777654 4555544443 1
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~ 203 (311)
.+-++.+.+.|++.+.+|+|+.... +.+++.+.++++.+ +++||++.|||.|++|+.+
T Consensus 131 ----------~~e~~~~~~~g~~~i~~t~~~~~~~-----------~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~ 189 (217)
T cd00331 131 ----------EEELERALALGAKIIGINNRDLKTF-----------EVDLNTTERLAPLIPKDVILVSESGISTPEDVKR 189 (217)
T ss_pred ----------HHHHHHHHHcCCCEEEEeCCCcccc-----------CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHH
Confidence 1225667889999999998864211 24778899999875 3699999999999999999
Q ss_pred HHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 204 HLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 204 ~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
+++. +|||++|++++..+...+.+
T Consensus 190 ~~~~Ga~gvivGsai~~~~~p~~~~ 214 (217)
T cd00331 190 LAEAGADAVLIGESLMRAPDPGAAL 214 (217)
T ss_pred HHHcCCCEEEECHHHcCCCCHHHHH
Confidence 9987 99999999999877654443
No 94
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.88 E-value=6.1e-08 Score=87.52 Aligned_cols=143 Identities=19% Similarity=0.255 Sum_probs=103.5
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC----hHHHHHHHHHH-hccccceeEEEE
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK----PLLVSDCIKAM-RDSVEIDITVKH 121 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~----~~~~~~iv~~v-~~~~~~pvsvKi 121 (311)
.+-+|++|.=- . +-++.+-++|++.|-|| +.+.++ |+++.++.+.. .+.+-+-+.+|.
T Consensus 76 ~~~v~vGGGIr-~--e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~ 138 (253)
T TIGR02129 76 PGGLQVGGGIN-D--TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRK 138 (253)
T ss_pred CCCEEEeCCcC-H--HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 36678877643 2 44555667899988875 555555 88999999988 444333333431
Q ss_pred ---------eccCCCCCcHHHHH-HHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386 122 ---------RIGIDDINSYDFVR-DFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189 (311)
Q Consensus 122 ---------R~g~~~~~~~~~~~-e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv 189 (311)
--||...... .+. ++++.+++. +..|.++. |..+++| .|++.++++++.. ++||
T Consensus 139 ~~~g~~~V~~~GW~~~t~~-~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G-----------~dlel~~~l~~~~-~ipV 204 (253)
T TIGR02129 139 TQDGRWIVAMNKWQTITDL-ELNAETLEELSKY-CDEFLIHAADVEGLCKG-----------IDEELVSKLGEWS-PIPI 204 (253)
T ss_pred cCCCcEEEEECCCcccCCC-ChHHHHHHHHHhh-CCEEEEeeecccCcccc-----------CCHHHHHHHHhhC-CCCE
Confidence 1257654433 356 889999999 99999884 4444455 5999999999986 8999
Q ss_pred EEecCCCCHHHHHHHHh---hcCEEEEehhhhhC
Q psy2386 190 IINGGIKTKKEIDLHLN---YIDGVMLGREAYKN 220 (311)
Q Consensus 190 i~nGgI~s~~da~~~l~---~adgVmigRa~l~~ 220 (311)
|++|||.|.+|+.++.+ ...++.+|++++.-
T Consensus 205 IASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f 238 (253)
T TIGR02129 205 TYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF 238 (253)
T ss_pred EEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence 99999999999998843 27789999998653
No 95
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.87 E-value=1e-07 Score=89.06 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=100.0
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcC--CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g--~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
++.+.+ |..++++.++.++++. | .|.|-+-... -+-+.+.+.++.+++....|+.++=.++
T Consensus 84 ~v~~Sv-G~t~e~~~r~~~lv~a-~~~~d~i~~D~ah---------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~ 146 (321)
T TIGR01306 84 FASISV-GVKACEYEFVTQLAEE-ALTPEYITIDIAH---------------GHSNSVINMIKHIKTHLPDSFVIAGNVG 146 (321)
T ss_pred EEEEEc-CCCHHHHHHHHHHHhc-CCCCCEEEEeCcc---------------CchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 444554 7788889888887765 4 4765553211 1346788899999998766644442222
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcH--HHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKY--NFVYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~--~~i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
..+.++.+.++|+|.|.|+ |++.|..-..|. +-.+| ..+.++++.+ ++|||+.|||++..
T Consensus 147 ---------t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~-----g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~ 211 (321)
T TIGR01306 147 ---------TPEAVRELENAGADATKVGIGPGKVCITKIKTGF-----GTGGWQLAALRWCAKAA-RKPIIADGGIRTHG 211 (321)
T ss_pred ---------CHHHHHHHHHcCcCEEEECCCCCccccceeeecc-----CCCchHHHHHHHHHHhc-CCeEEEECCcCcHH
Confidence 2578999999999999998 564322211111 11244 4788998887 89999999999999
Q ss_pred HHHHHHhh-cCEEEEehhhhh
Q psy2386 200 EIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 200 da~~~l~~-adgVmigRa~l~ 219 (311)
|+.++|.. ||+||+||.+-+
T Consensus 212 Di~KALa~GAd~Vmig~~~ag 232 (321)
T TIGR01306 212 DIAKSIRFGASMVMIGSLFAG 232 (321)
T ss_pred HHHHHHHcCCCEEeechhhcC
Confidence 99999987 999999988744
No 96
>PLN02535 glycolate oxidase
Probab=98.86 E-value=9.1e-08 Score=91.00 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=112.0
Q ss_pred CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCccc--------------------Ccc----
Q psy2386 45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFG--------------------AIL---- 95 (311)
Q Consensus 45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G--------------------~~L---- 95 (311)
+.|...||.= .|.+...+-.++++++||..|=+..=+|..-.+ +.++. +.+
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA 202 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence 4689999996 568888888899999999999888777653211 11110 000
Q ss_pred --cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc
Q psy2386 96 --MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK 173 (311)
Q Consensus 96 --l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~ 173 (311)
.-++.+--+-++.+++..+.||.||==. . .+-++.+.++|+|+|.+.+.-....++ .+.-
T Consensus 203 ~~~~~~~~tW~~i~~lr~~~~~PvivKgV~---~-------~~dA~~a~~~GvD~I~vsn~GGr~~d~--------~~~t 264 (364)
T PLN02535 203 SETFDASLSWKDIEWLRSITNLPILIKGVL---T-------REDAIKAVEVGVAGIIVSNHGARQLDY--------SPAT 264 (364)
T ss_pred HhccCCCCCHHHHHHHHhccCCCEEEecCC---C-------HHHHHHHHhcCCCEEEEeCCCcCCCCC--------ChHH
Confidence 0123333366788888889999999221 1 245788999999999986432211111 1233
Q ss_pred HHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 174 YNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 174 ~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
.+.+.++++.+ .++|||+.|||++..|+.++|.. ||+|++||+++..+.
T Consensus 265 ~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 265 ISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred HHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 57777887764 25999999999999999999987 999999999977544
No 97
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.86 E-value=9.3e-08 Score=85.88 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=99.3
Q ss_pred EEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh-ccccceeEEEEe----
Q psy2386 50 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-DSVEIDITVKHR---- 122 (311)
Q Consensus 50 ~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~-~~~~~pvsvKiR---- 122 (311)
+|++| .+.++. +.+-+.|++-|=| |+..+++|+++.++.+..- +. +-+++-+|
T Consensus 76 v~vGGGIrs~e~~----~~~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~--ivvslD~~~~~~ 135 (232)
T PRK13586 76 IQVGGGIRDIEKA----KRLLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSNR--VLVSIDYDNTKR 135 (232)
T ss_pred EEEeCCcCCHHHH----HHHHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCC--EEEEEEcCCCCE
Confidence 67765 344443 3333567777654 5778899999999998883 33 33444442
Q ss_pred ---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 123 ---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 123 ---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
-||.... . .+.++++.+++.|+..+.++.- ..+.+| .|++.++++++. + .|++++|||.|
T Consensus 136 v~~~gw~~~~-~-~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G-----------~d~el~~~~~~~-~-~~viasGGv~s 200 (232)
T PRK13586 136 VLIRGWKEKS-M-EVIDGIKKVNELELLGIIFTYISNEGTTKG-----------IDYNVKDYARLI-R-GLKEYAGGVSS 200 (232)
T ss_pred EEccCCeeCC-C-CHHHHHHHHHhcCCCEEEEecccccccCcC-----------cCHHHHHHHHhC-C-CCEEEECCCCC
Confidence 1565422 2 4679999999999999998854 333444 589999998875 3 46999999999
Q ss_pred HHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386 198 KKEIDLHLNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 198 ~~da~~~l~~-adgVmigRa~l~~P 221 (311)
.+|+.++... +|||++|++++.+-
T Consensus 201 ~~Dl~~l~~~G~~gvivg~Aly~g~ 225 (232)
T PRK13586 201 DADLEYLKNVGFDYIIVGMAFYLGK 225 (232)
T ss_pred HHHHHHHHHCCCCEEEEehhhhcCc
Confidence 9999999865 99999999998653
No 98
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.84 E-value=1.8e-07 Score=88.79 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=112.6
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-----------------------------
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF----------------------------- 91 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~----------------------------- 91 (311)
+.|.-.||.-.+.+......++++++||+.|=+..=+|..-.+ +.++
T Consensus 115 ~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~ 194 (361)
T cd04736 115 DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGM 194 (361)
T ss_pred CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccc
Confidence 4589999999887777777889999999999998665533221 0111
Q ss_pred ----------cCc-------c--cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386 92 ----------GAI-------L--MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH 152 (311)
Q Consensus 92 ----------G~~-------L--l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh 152 (311)
+.. + .-++.+.-+.++.+++..+.|+.+| |... .+-++.+.+.|+|+|.|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~~-------~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 195 PQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIVT-------AEDAKRCIELGADGVILS 264 (361)
T ss_pred ccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCCC-------HHHHHHHHHCCcCEEEEC
Confidence 000 0 1123344457888999889999999 3321 456888899999999874
Q ss_pred --cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 153 --ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 153 --~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
|.+.+ .+ .+...+.+.++++.+ ++|||+.|||++..|+.+.+.. ||+||+||+++.
T Consensus 265 nhGGrql-d~---------~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 265 NHGGRQL-DD---------AIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred CCCcCCC-cC---------CccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 44331 11 124578889999888 6999999999999999999987 999999999864
No 99
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.82 E-value=8.7e-08 Score=84.14 Aligned_cols=141 Identities=10% Similarity=0.183 Sum_probs=103.5
Q ss_pred HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec-c----CC-------CCCcHH
Q psy2386 66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI-G----ID-------DINSYD 132 (311)
Q Consensus 66 ~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~-g----~~-------~~~~~~ 132 (311)
.+-.+|+|-|-|| ++-+.||+++.++.+..-..+ =+.+..|-+. | |. .....
T Consensus 91 ~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~- 155 (256)
T COG0107 91 KLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL- 155 (256)
T ss_pred HHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc-
Confidence 4556799999999 456789999999998886654 2334445432 1 11 11112
Q ss_pred HHHHHHHHHHHcCCCEEEEecCc--cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--c
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARN--AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I 208 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt--~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--a 208 (311)
+..+|++.+++.|+..|.+.... ....| .|.++++.+++.+ ++|||++||.-++++..+.+.. |
T Consensus 156 d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-----------yDl~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 156 DAVEWAKEVEELGAGEILLTSMDRDGTKAG-----------YDLELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CHHHHHHHHHHcCCceEEEeeecccccccC-----------cCHHHHHHHHHhC-CCCEEecCCCCcHHHHHHHHHhcCc
Confidence 46899999999999999887544 33334 4899999999999 8999999999999999999965 9
Q ss_pred CEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 209 DGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 209 dgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
|++..+.=+..+-.-..++++++..
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAE 248 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHH
Confidence 9888776665555555566655543
No 100
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.81 E-value=4.4e-08 Score=85.89 Aligned_cols=143 Identities=24% Similarity=0.303 Sum_probs=97.7
Q ss_pred HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386 62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l 141 (311)
+-|++++++|+-.|------|... +...|-+-|.||+.+.+|.++ +++||..|+|+|-- . -++.|
T Consensus 31 EQA~IAE~aGAvAVMaLervPaDi--R~aGGVaRMaDp~~i~eim~a----VsIPVMAKvRIGH~--------~-EA~iL 95 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPADI--RAAGGVARMADPKMIEEIMDA----VSIPVMAKVRIGHF--------V-EAQIL 95 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHHH--HhccCccccCCHHHHHHHHHh----cccceeeeeecchh--------H-HHHHH
Confidence 346788899987776655667764 233577889999998888776 78999999999832 2 26788
Q ss_pred HHcCCCEEE-----------Ee-------------cCcc------c--------cccCCCCcC-----------------
Q psy2386 142 SSAGCRTFI-----------VH-------------ARNA------F--------LKKLNPKQN----------------- 166 (311)
Q Consensus 142 ~~~G~~~it-----------vh-------------~Rt~------~--------~~G~~g~~~----------------- 166 (311)
+..|+|+|- .| +|.- . .+|-.|.-+
T Consensus 96 ealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~ 175 (296)
T COG0214 96 EALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRR 175 (296)
T ss_pred HHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999884 11 1110 0 111111100
Q ss_pred --------C----CCCcCcHHHHHHHHHhCCCCeE--EEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386 167 --------R----KIPILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 167 --------~----~~~~~~~~~i~~i~~~~~~ipv--i~nGgI~s~~da~~~l~~-adgVmigRa~l~~ 220 (311)
. ..-.+-++++.++++.- ++|| ++.|||.||.|+.-+++. ||||.+|+|.+.-
T Consensus 176 l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 176 LQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence 0 00012356677777664 7888 589999999999999987 9999999998653
No 101
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.81 E-value=1e-07 Score=86.24 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccC-----------ChHHHHHHHHHHhccccceeEE--EEe
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT-----------KPLLVSDCIKAMRDSVEIDITV--KHR 122 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~-----------~~~~~~~iv~~v~~~~~~pvsv--KiR 122 (311)
+.+.+.+.++.+++.|+|.|||++ |...-.-+|- ..+ +.+...++++.+++.+++|+.+ +..
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~---~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGI--PFSDPVADGP---VIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 667899999999999999999997 7655443321 112 2357788999999877888644 433
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEE---e-----------------------cCccc------------------c
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIV---H-----------------------ARNAF------------------L 158 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itv---h-----------------------~Rt~~------------------~ 158 (311)
.-+..+ ...|++.+.++|++.+++ | +-|.. .
T Consensus 87 ~~~~~G-----~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 87 PILQYG-----LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR 161 (242)
T ss_pred HHHHhC-----HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence 211110 245677777777777776 2 11100 0
Q ss_pred ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386 159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 218 (311)
Q Consensus 159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l 218 (311)
.|..|.... ..+...+.++++++.. ++||...|||++.+++.++.+.||||.+|++++
T Consensus 162 ~g~tG~~~~-~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~~~ADgvVvGSaiv 219 (242)
T cd04724 162 TGVTGARTE-LPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVAKYADGVIVGSALV 219 (242)
T ss_pred CCCCCCccC-CChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHHccCCEEEECHHHH
Confidence 122222111 1122357888999875 899999999999999999887799999999884
No 102
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.75 E-value=5.2e-07 Score=81.14 Aligned_cols=150 Identities=11% Similarity=0.158 Sum_probs=102.0
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~ 127 (311)
+-+|++|.- ..+..+ +.+.++|++-|=|| +...++ +++.++++...+. .+-|++-++-+...
T Consensus 79 ~~v~vgGGi-r~~edv-~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~ 140 (233)
T cd04723 79 LGLWVDGGI-RSLENA-QEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLL 140 (233)
T ss_pred CCEEEecCc-CCHHHH-HHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeec
Confidence 346776632 112222 23334677766554 556788 9999999998552 34455555544110
Q ss_pred -CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386 128 -INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN 206 (311)
Q Consensus 128 -~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~ 206 (311)
......+.++++.+++. ++.+++..-.. -...+ ..|++.++++.+.. ++||++.|||+|.+|+.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~-~~~li~~di~~-~G~~~--------g~~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~~ 209 (233)
T cd04723 141 KPTDFIGPEELLRRLAKW-PEELIVLDIDR-VGSGQ--------GPDLELLERLAARA-DIPVIAAGGVRSVEDLELLKK 209 (233)
T ss_pred cccCcCCHHHHHHHHHHh-CCeEEEEEcCc-cccCC--------CcCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHH
Confidence 00011367899999999 99998875542 11111 25899999999987 799999999999999999998
Q ss_pred h-cCEEEEehhhhhCCcchHH
Q psy2386 207 Y-IDGVMLGREAYKNPFLMSN 226 (311)
Q Consensus 207 ~-adgVmigRa~l~~P~i~~~ 226 (311)
. +++|.+|++++.+-.-+.+
T Consensus 210 ~G~~~vivGsal~~g~~~~~~ 230 (233)
T cd04723 210 LGASGALVASALHDGGLTLED 230 (233)
T ss_pred cCCCEEEEehHHHcCCCCHHH
Confidence 6 9999999999887544443
No 103
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.74 E-value=2.6e-07 Score=89.25 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC-CCCCcCcH
Q psy2386 97 TKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKY 174 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~-~~~~~~~~ 174 (311)
.+++.+.++++.+|+.++ +||.+|.-.+.+ ..++++.++..|+|+|+|.|.... .|.++... ...+..-.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~-------~~~~a~~~~~~g~D~I~VsG~~Gg-tg~~~~~~~~~~g~pt~ 267 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHG-------EGDIAAGVAAAGADFITIDGAEGG-TGAAPLTFIDHVGLPTE 267 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCCC-------HHHHHHHHHHcCCCEEEEeCCCCC-CCCCcccccccCCccHH
Confidence 356678999999999987 999999886521 247788888888999999876421 11111000 00111112
Q ss_pred HHHHHHHHhC------CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 175 NFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 175 ~~i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
..+.++.+.+ .++||++.|||+|..|+.+++.. ||+|.+||+++.
T Consensus 268 ~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~ 319 (392)
T cd02808 268 LGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHH
Confidence 2333333321 25999999999999999999987 999999999985
No 104
>PLN02979 glycolate oxidase
Probab=98.74 E-value=8.9e-07 Score=83.77 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=109.9
Q ss_pred CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcccC-------cc-----------------
Q psy2386 45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFGA-------IL----------------- 95 (311)
Q Consensus 45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G~-------~L----------------- 95 (311)
+.+...||. -.|.+...+-.++++++||..|=+..=+|..-.+ +.++-. .+
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 358999998 4577888888899999999999998776655111 111100 00
Q ss_pred -----cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386 96 -----MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 96 -----l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
.-+|.+-=+-++.+++..++||.||-=. . .+-++.+.++|+|+|.|.+.-.... ...
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~---~-------~~dA~~a~~~Gvd~I~VsnhGGrql--------d~~ 261 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL---T-------GEDARIAIQAGAAGIIVSNHGARQL--------DYV 261 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC---C-------HHHHHHHHhcCCCEEEECCCCcCCC--------CCc
Confidence 0122222355788899899999999332 1 3567889999999999965432111 111
Q ss_pred cCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 171 ILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 171 ~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+.-.+.+.++++.+ .++||++.|||++..|+.+.+.. ||+|++||.++.
T Consensus 262 p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 262 PATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 23456777777764 35999999999999999999987 999999998864
No 105
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.74 E-value=4.3e-08 Score=86.03 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+.++++++..+.|+|.|++-.-|+...| ...++++|+++++.+ .||+...|||+|.+|+.++|.. ||-|
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~g---------r~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKV 100 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSEG---------RETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKV 100 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEeccccccc---------chhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCee
Confidence 3589999999999999998766653222 125889999999998 8999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.|.++++.||.+.+++.+.+
T Consensus 101 SINsaAv~~p~lI~~~a~~F 120 (256)
T COG0107 101 SINSAAVKDPELITEAADRF 120 (256)
T ss_pred eeChhHhcChHHHHHHHHHh
Confidence 99999999999999987653
No 106
>KOG1606|consensus
Probab=98.73 E-value=8.3e-08 Score=83.01 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=100.3
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 142 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~ 142 (311)
-|++++++|+-.|-.----|... +...|-+-|.||..+.|| ++++++||..|.|+|- ++| ++.|+
T Consensus 33 QA~iAE~aGACaVmalervPadi--R~~GgV~RMsDP~mIKei----~~aVsiPVMAk~RiGH--------FVE-AQIlE 97 (296)
T KOG1606|consen 33 QARIAEEAGACAVMALERVPADI--RAQGGVARMSDPRMIKEI----KNAVSIPVMAKVRIGH--------FVE-AQILE 97 (296)
T ss_pred HHHHHHhcCcceEeeeccCCHhH--HhcCCeeecCCHHHHHHH----HHhccchhhhhhhhhh--------hhH-HHHHH
Confidence 46788888976665555567653 233577889999876555 5558999999999972 333 67788
Q ss_pred HcCCCEEE-----------------------E-ecCcc--------------ccccCCCCcC------------------
Q psy2386 143 SAGCRTFI-----------------------V-HARNA--------------FLKKLNPKQN------------------ 166 (311)
Q Consensus 143 ~~G~~~it-----------------------v-h~Rt~--------------~~~G~~g~~~------------------ 166 (311)
+.|+|+|. | -+|.- ..+|-.|.-+
T Consensus 98 ~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~ 177 (296)
T KOG1606|consen 98 ALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVL 177 (296)
T ss_pred HhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 88888874 0 01110 0111111100
Q ss_pred --C---------CCCcCcHHHHHHHHHhCCCCeE--EEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386 167 --R---------KIPILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 167 --~---------~~~~~~~~~i~~i~~~~~~ipv--i~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~ 230 (311)
. ..-.+-++++++.++.- .+|| ++.|||.||.|+.-+++. ||||.+|+|.+..+.-++.....
T Consensus 178 ~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~ai 254 (296)
T KOG1606|consen 178 KNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAI 254 (296)
T ss_pred HcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHH
Confidence 0 00012356666666654 7898 589999999999999987 99999999998887766665543
No 107
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.71 E-value=1.2e-07 Score=84.95 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.+++....+..+| .+.+++.++++++.+ ++||++.|||+|.+|++++++. ||+|
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g---------~~~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~v 100 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG---------KPVNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRV 100 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEE
Confidence 4689999999999999999876542233 125899999999987 7999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
++|++++.+|.++.++.+.+
T Consensus 101 ilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 101 IIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred EECchHHhCHHHHHHHHHHh
Confidence 99999999998888887654
No 108
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.69 E-value=9e-07 Score=80.70 Aligned_cols=165 Identities=17% Similarity=0.138 Sum_probs=105.6
Q ss_pred CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhcc-ccc
Q psy2386 47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDS-VEI 115 (311)
Q Consensus 47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~-~~~ 115 (311)
.++.=+... |++...++++.+.+.|+|.|||. =|.+.-.-+|- --+|- -+.+.+.++++++++. .++
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElG--iPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELG--VPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 355555543 66788999999999999999994 45433222210 00111 2457788999999876 688
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--------------------------Ccc-------------
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA------------- 156 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--------------------------Rt~------------- 156 (311)
|+. +-..++.--.+ -..+|++.+.++|++.+++|. -|.
T Consensus 89 plv--~m~Y~Npi~~~-G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g 165 (256)
T TIGR00262 89 PIG--LLTYYNLIFRK-GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG 165 (256)
T ss_pred CEE--EEEeccHHhhh-hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence 864 22111110000 124566666777777766552 110
Q ss_pred -----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 157 -----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 157 -----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l 218 (311)
...|++|..... .+...+.++++++.. +.||+..|||+|++++.++.+. ||||.+|++++
T Consensus 166 fiy~vs~~G~TG~~~~~-~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 166 FVYLVSRAGVTGARNRA-ASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred CEEEEECCCCCCCcccC-ChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 012445532112 233578899999987 7899999999999999999987 99999999984
No 109
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.69 E-value=9.7e-07 Score=84.58 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=108.1
Q ss_pred CCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc------------------------c---
Q psy2386 45 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF------------------------G--- 92 (311)
Q Consensus 45 ~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~------------------------G--- 92 (311)
+.|.-.||.-. |.+...+..++++++||..|=|..=.|..-.+ +.++ +
T Consensus 137 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (383)
T cd03332 137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE 216 (383)
T ss_pred CCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCC
Confidence 46899998865 78888888899999999998886444322111 0000 0
Q ss_pred ------------Ccc---cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386 93 ------------AIL---MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157 (311)
Q Consensus 93 ------------~~L---l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~ 157 (311)
+.. .-+|.+--+-++.+++.++.||.+| |... .+-++.+.+.|+|+|.|.+.-..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV~~-------~~dA~~a~~~G~d~I~vsnhGGr 286 (383)
T cd03332 217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GILH-------PDDARRAVEAGVDGVVVSNHGGR 286 (383)
T ss_pred CcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cCCC-------HHHHHHHHHCCCCEEEEcCCCCc
Confidence 000 0122222356777888889999999 3321 35678889999999998533210
Q ss_pred cccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 158 LKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+....+.-.+.+.++++.+. ++||++.|||++..|+.+.+.. ||+|++||+++.
T Consensus 287 --------~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 287 --------QVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAY 342 (383)
T ss_pred --------CCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 00112334677888887763 4999999999999999999987 999999999873
No 110
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.68 E-value=1.7e-06 Score=76.15 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec------cCC-----
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------GID----- 126 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~------g~~----- 126 (311)
+++.+.|+.+.+.|.|+|.|. || .--+.+.+.++++++|+.+++||.+--.- +.|
T Consensus 11 e~~~~ia~~v~~~gtDaI~VG-------------GS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~ 76 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVG-------------GS-LGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFM 76 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEc-------------Cc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEE
Confidence 556667778889999999984 33 32378889999999999888998763110 000
Q ss_pred ----CC------------------------------------------------CcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386 127 ----DI------------------------------------------------NSYDFVRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 127 ----~~------------------------------------------------~~~~~~~e~~~~l~~~G~~~itvh~R 154 (311)
.. ...++...++...+..|++.|.+..-
T Consensus 77 sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~ 156 (205)
T TIGR01769 77 SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG 156 (205)
T ss_pred EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 00 11223333344444444444443211
Q ss_pred ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 155 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 155 t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
||. ..+.+.++++++++.+ ++|++..|||+|+++++++++. ||+|.+|
T Consensus 157 -------sGa----~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 157 -------SGA----SYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred -------CCC----CCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 121 2235789999999998 8999999999999999999875 9999987
No 111
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.66 E-value=1.1e-06 Score=78.48 Aligned_cols=141 Identities=14% Similarity=0.221 Sum_probs=96.2
Q ss_pred eEEEecC-CCHHHHHHHHHHHHHc-CCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 48 IAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 48 ~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+..+-.| .+.++-.+.|+++.+. |-++|-|-. |-| -.|+.|+....+-.+.+.+. +.-|..=+.
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~-- 131 (248)
T cd04728 65 LLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYCT-- 131 (248)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEEeC--
Confidence 3344443 4688899999999886 446666641 222 24666665555444444322 322221111
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~ 204 (311)
++ ...++++++.|++.|..+|..- | +| .+..+++.|+.+++.. ++|||..|||.|++|+.++
T Consensus 132 ---dd-----~~~ar~l~~~G~~~vmPlg~pI---G-sg-----~Gi~~~~~I~~I~e~~-~vpVI~egGI~tpeda~~A 193 (248)
T cd04728 132 ---DD-----PVLAKRLEDAGCAAVMPLGSPI---G-SG-----QGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQA 193 (248)
T ss_pred ---CC-----HHHHHHHHHcCCCEeCCCCcCC---C-CC-----CCCCCHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHH
Confidence 12 4789999999999997766642 1 11 1335789999999985 8999999999999999999
Q ss_pred Hhh-cCEEEEehhhhh
Q psy2386 205 LNY-IDGVMLGREAYK 219 (311)
Q Consensus 205 l~~-adgVmigRa~l~ 219 (311)
++. ||+|++|+|...
T Consensus 194 melGAdgVlV~SAIt~ 209 (248)
T cd04728 194 MELGADAVLLNTAIAK 209 (248)
T ss_pred HHcCCCEEEEChHhcC
Confidence 987 999999999863
No 112
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.65 E-value=3.8e-07 Score=81.42 Aligned_cols=104 Identities=13% Similarity=0.244 Sum_probs=76.2
Q ss_pred ccCcccCChHHHHHHHHHHhccccceeEEEEe------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCC
Q psy2386 91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLN 162 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~ 162 (311)
.|+..+++|+++.++.. -+++-.+ .||.. ...++.+.+.+.|+ .+.+.. |..+.+|
T Consensus 107 igT~a~~~p~~l~~~~~--------vvslD~~~g~v~~~g~~~-----~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G-- 170 (221)
T TIGR00734 107 VATETLDITELLRECYT--------VVSLDFKEKFLDASGLFE-----SLEEVRDFLNSFDY-GLIVLDIHSVGTMKG-- 170 (221)
T ss_pred ecChhhCCHHHHHHhhh--------EEEEEeECCccccccccc-----cHHHHHHHHHhcCC-EEEEEECCccccCCC--
Confidence 46777889999887751 2333333 24442 24677788888998 666642 3222222
Q ss_pred CCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386 163 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 163 g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~ 220 (311)
.|++.++++++.+ ++|||+.|||.|++|+.++.+. +|+|++|++++.+
T Consensus 171 ---------~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 171 ---------PNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred ---------CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 5899999999987 7999999999999999997765 9999999999764
No 113
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.65 E-value=1.9e-06 Score=82.40 Aligned_cols=155 Identities=14% Similarity=0.175 Sum_probs=106.9
Q ss_pred CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcccCc------c---cCCh-----------
Q psy2386 45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFGAI------L---MTKP----------- 99 (311)
Q Consensus 45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G~~------L---l~~~----------- 99 (311)
+.|.-.||. -.|.+...+..++++++||..|=+..=+|..-.+ +.++-.- + +.+|
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~ 200 (381)
T PRK11197 121 KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGR 200 (381)
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccC
Confidence 468999995 4588888888899999999999998777743221 1111000 0 0000
Q ss_pred ------------------H------------HHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE
Q psy2386 100 ------------------L------------LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF 149 (311)
Q Consensus 100 ------------------~------------~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i 149 (311)
+ +-=+=++.+++.++.||.||==. ..+-++.+.+.|+|+|
T Consensus 201 ~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~----------s~~dA~~a~~~Gvd~I 270 (381)
T PRK11197 201 PHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL----------DPEDARDAVRFGADGI 270 (381)
T ss_pred CCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecC----------CHHHHHHHHhCCCCEE
Confidence 0 00122677888889999999332 1456788899999999
Q ss_pred EEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 150 IVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 150 tvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
.|.+ .+. ..+ .+.-.+.+.++.+.+ .++||++.|||++..|+.+.|.. ||+||+||.++.
T Consensus 271 ~Vs~hGGr~-~d~---------~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 271 VVSNHGGRQ-LDG---------VLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred EECCCCCCC-CCC---------cccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 9853 332 111 122356677776655 36999999999999999999987 999999999854
No 114
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.65 E-value=8.4e-07 Score=84.57 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=103.5
Q ss_pred CCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-----------------------------
Q psy2386 46 HPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF----------------------------- 91 (311)
Q Consensus 46 ~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~----------------------------- 91 (311)
.|...||.- .|.+...+..++++++||+.+-++.=+|..-.+ +.++
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 789999954 588888888899999999988876543321110 0000
Q ss_pred ----c--C----cc---cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCcc
Q psy2386 92 ----G--A----IL---MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNA 156 (311)
Q Consensus 92 ----G--~----~L---l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~ 156 (311)
+ . .+ .-++...-+-++.+++.+++||.||==+. .+-++.+.+.|+++|.|. |.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~----------~~da~~~~~~G~~~i~vs~hGGr~ 259 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLS----------PEDAKRAVDAGVDGIDVSNHGGRQ 259 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-S----------HHHHHHHHHTT-SEEEEESGTGTS
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEeccc----------HHHHHHHHhcCCCEEEecCCCccc
Confidence 0 0 00 01333444557888888999999994421 355789999999999995 4433
Q ss_pred ccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 157 FLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
...| +.-.+.+.++++.++ ++||++.|||++..|+.+.+.. ||+|.+||+++.
T Consensus 260 ~d~~----------~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 260 LDWG----------PPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp STTS-----------BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred Cccc----------cccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 1111 234577778887654 6999999999999999999987 999999998854
No 115
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.64 E-value=1.8e-07 Score=83.96 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.|+++...+...+ .+.+++.++++++.+ ++||+++|||+|.+|+.++++. |++|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~---------~~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRG---------REPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKV 100 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccC---------CCCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3689999999999999999987652111 236899999999987 7999999999999999998876 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
++|++++.+|.++.++.+.+
T Consensus 101 ilg~~~l~~~~~~~~~~~~~ 120 (232)
T TIGR03572 101 SINTAALENPDLIEEAARRF 120 (232)
T ss_pred EEChhHhcCHHHHHHHHHHc
Confidence 99999999999999987654
No 116
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.64 E-value=6.6e-07 Score=89.34 Aligned_cols=167 Identities=10% Similarity=0.133 Sum_probs=111.6
Q ss_pred eEEEecCC--CHHH-------HHHHHHHHHHcCCCEEEeccC---CCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386 48 IAFQVGDN--EPKK-------LAKSAKIIQKWGYDEINLNCG---CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 115 (311)
Q Consensus 48 ~~~Ql~g~--~~~~-------~~~aa~~~~~~g~d~IdiN~g---CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~ 115 (311)
+=+|++|. +.++ -.+.++.+-++|+|-|-||-. -|-.. +-+.-..+|+++.++.+..-+.+ +
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~-----~~~~~~~~p~~i~~~~~~fg~q~-i 388 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEY-----IASGVKTGKTSIEQISRVYGNQA-V 388 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhh-----hccccccCHHHHHHHHHHcCCce-E
Confidence 44677774 2222 134455666789999999832 12111 11113467899999999885441 2
Q ss_pred eeEEEEec----------------------------------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccc
Q psy2386 116 DITVKHRI----------------------------------GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLK 159 (311)
Q Consensus 116 pvsvKiR~----------------------------------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~ 159 (311)
-|++-.|- ||...... ...++++.+++.|+..|.+..- ..+.+
T Consensus 389 vvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~-~~~~~~~~~~~~Gageil~t~id~DGt~~ 467 (538)
T PLN02617 389 VVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPI-GAYELAKAVEELGAGEILLNCIDCDGQGK 467 (538)
T ss_pred EEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCC-CHHHHHHHHHhcCCCEEEEeecccccccc
Confidence 22222221 34332222 4689999999999999988754 33344
Q ss_pred cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
| .|.++++++++.+ ++|||++||+.+++|+.+++.. +|+++.|.-+...-.-..++++.+..
T Consensus 468 G-----------~d~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~ 531 (538)
T PLN02617 468 G-----------FDIELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLE 531 (538)
T ss_pred C-----------cCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHH
Confidence 4 4899999999998 8999999999999999999974 89999996665544555555555443
No 117
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.63 E-value=3.9e-06 Score=76.68 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.|++..=|-.+|.+. ..+..+|+|+|=|.. +. + +++.+.++++..++ .+..+.|-+..
T Consensus 111 ~iPvl~kdfi~~~~qi----~~a~~~GAD~VlLi~-------------~~-l-~~~~l~~li~~a~~-lGl~~lvevh~- 169 (260)
T PRK00278 111 SLPVLRKDFIIDPYQI----YEARAAGADAILLIV-------------AA-L-DDEQLKELLDYAHS-LGLDVLVEVHD- 169 (260)
T ss_pred CCCEEeeeecCCHHHH----HHHHHcCCCEEEEEe-------------cc-C-CHHHHHHHHHHHHH-cCCeEEEEeCC-
Confidence 4677766666666643 334578999998862 22 2 45788889988877 47777675553
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDL 203 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~ 203 (311)
..| ++++.+.|++.|-+|+|+. +-+ ..|++...++.+.+|+ .|+|+-|||.|++|+.+
T Consensus 170 ---------~~E-~~~A~~~gadiIgin~rdl--~~~---------~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~ 228 (260)
T PRK00278 170 ---------EEE-LERALKLGAPLIGINNRNL--KTF---------EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKR 228 (260)
T ss_pred ---------HHH-HHHHHHcCCCEEEECCCCc--ccc---------cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHH
Confidence 122 3556788999999999874 111 2478888888887764 69999999999999999
Q ss_pred HHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386 204 HLNY-IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 204 ~l~~-adgVmigRa~l~~P~i~~~~~~ 229 (311)
+++. +|+|.||++++..+..-..+.+
T Consensus 229 ~~~~Gad~vlVGsaI~~~~dp~~~~~~ 255 (260)
T PRK00278 229 LAKAGADAVLVGESLMRADDPGAALRE 255 (260)
T ss_pred HHHcCCCEEEECHHHcCCCCHHHHHHH
Confidence 9987 9999999999988876555443
No 118
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.61 E-value=8.8e-07 Score=79.40 Aligned_cols=140 Identities=16% Similarity=0.334 Sum_probs=95.2
Q ss_pred eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--
Q psy2386 48 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-- 123 (311)
Q Consensus 48 ~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~-- 123 (311)
+-+|+.| ++.++..+. .+.|++.|=+ |++.. +|+++.++.+...+ +-|++-.|-
T Consensus 74 ~pv~~gGGIrs~edv~~l----~~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g~ 131 (228)
T PRK04128 74 LKVQVGGGLRTYESIKDA----YEIGVENVII--------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGGR 131 (228)
T ss_pred CCEEEcCCCCCHHHHHHH----HHCCCCEEEE--------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCCe
Confidence 3355554 566666433 3568888765 45566 89999999887733 445555443
Q ss_pred ----cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 124 ----GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 124 ----g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
||...... ...++++.+++. +..+.++. |..+.+| .| ++.+.++++|||++|||.|
T Consensus 132 v~~~gw~~~~~~-~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G-----------~d-----~l~~~~~~~pviasGGv~~ 193 (228)
T PRK04128 132 IAVKGWLEESSI-KVEDAYEMLKNY-VNRFIYTSIERDGTLTG-----------IE-----EIERFWGDEEFIYAGGVSS 193 (228)
T ss_pred EecCCCeEcCCC-CHHHHHHHHHHH-hCEEEEEeccchhcccC-----------HH-----HHHHhcCCCCEEEECCCCC
Confidence 45432222 356888888888 88888874 3333344 23 3333334799999999999
Q ss_pred HHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
.+|+.++.+. ++||++|++++..-.-..++
T Consensus 194 ~~Dl~~l~~~g~~gvivg~al~~g~~~~~~~ 224 (228)
T PRK04128 194 AEDVKKLAEIGFSGVIIGKALYEGRISLEEL 224 (228)
T ss_pred HHHHHHHHHCCCCEEEEEhhhhcCCcCHHHH
Confidence 9999999876 99999999998765544443
No 119
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.60 E-value=2.6e-07 Score=82.81 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=79.7
Q ss_pred EEEeccCCCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 119 VKHRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 119 vKiR~g~~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
|+..-||.+... +.+..++++.+.+. ++.+++-.+++..+|. +.+++.++++.+.+ ++||++.|||+|
T Consensus 16 Vr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~~-~~pv~~gGGIrs 84 (228)
T PRK04128 16 VRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRET-GLKVQVGGGLRT 84 (228)
T ss_pred EEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhhC-CCCEEEcCCCCC
Confidence 445556654321 11467899999998 9999997776533331 25899999999986 899999999999
Q ss_pred HHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386 198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~ 230 (311)
.+|++++++. +|+|.+|++++ ||.+++++.+.
T Consensus 85 ~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~ 117 (228)
T PRK04128 85 YESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSE 117 (228)
T ss_pred HHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHH
Confidence 9999999987 99999999999 99999988764
No 120
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.60 E-value=2.5e-07 Score=83.37 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..++++.+.+.|++.+++-..+....+ ...+++.++++.+.+ ++|++.+|||+|.+|++.+++. ||+|+
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEG---------ERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVI 103 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcC---------CcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 578999999999999866544321222 125789999999998 7999999999999999999987 99999
Q ss_pred EehhhhhCCcchHHhHhhh
Q psy2386 213 LGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 213 igRa~l~~P~i~~~~~~~~ 231 (311)
+|+.++.+|+++.++.+.+
T Consensus 104 iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 104 LGTAAVENPEIVRELSEEF 122 (241)
T ss_pred EChHHhhChHHHHHHHHHh
Confidence 9999999999999987764
No 121
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.58 E-value=3.3e-06 Score=76.98 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=101.2
Q ss_pred CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc------ccCccc--CChHHHHHHHHHHh-ccccc
Q psy2386 47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMR-DSVEI 115 (311)
Q Consensus 47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~------~G~~Ll--~~~~~~~~iv~~v~-~~~~~ 115 (311)
.++.=+... |.+...++++.+.+.|+|.|||. =|.+.-.-+| .--+|- -+.+.+.++++++| +..++
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElG--iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~ 90 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELG--IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTI 90 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 355555544 66789999999999999999995 4543322221 001111 14567788888988 55678
Q ss_pred eeEEEEeccCCC------------------------CCcHHHHHHHHHHHHHcCCCEEE-EecCcc--------------
Q psy2386 116 DITVKHRIGIDD------------------------INSYDFVRDFVGTVSSAGCRTFI-VHARNA-------------- 156 (311)
Q Consensus 116 pvsvKiR~g~~~------------------------~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~-------------- 156 (311)
|+.+ -..+.. +-++++..++.+.+.+.|.+.|. +.+.+.
T Consensus 91 p~vl--m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gf 168 (258)
T PRK13111 91 PIVL--MTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGF 168 (258)
T ss_pred CEEE--EecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCc
Confidence 8643 222221 11123334444444444444444 222220
Q ss_pred c----cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386 157 F----LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 218 (311)
Q Consensus 157 ~----~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l 218 (311)
. ..|.+|... ..+....+.++++++.. ++||+..+||+|++++.+++..||||.||++++
T Consensus 169 IY~vs~~GvTG~~~-~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv 232 (258)
T PRK13111 169 VYYVSRAGVTGARS-ADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAVADGVIVGSALV 232 (258)
T ss_pred EEEEeCCCCCCccc-CCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHH
Confidence 0 123344321 11222345899999977 899999999999999999997799999999986
No 122
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.58 E-value=2.6e-06 Score=81.08 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=108.6
Q ss_pred CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCccc-----------------------Ccc-
Q psy2386 45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFG-----------------------AIL- 95 (311)
Q Consensus 45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G-----------------------~~L- 95 (311)
+.|.-.||. -.|.+...+..++++++||..+=+..=+|..-.+ +.++- ..+
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 200 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHH
Confidence 457899998 4577888888899999999999887666644111 11100 000
Q ss_pred -----cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386 96 -----MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 96 -----l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
.-++.+-=+-++.+|+..+.||.||==. . .+-++.+.++|+|.|.|.+.-+.... ..
T Consensus 201 ~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~---~-------~~dA~~a~~~Gvd~I~VsnhGGrqld--------~~ 262 (367)
T PLN02493 201 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL---T-------GEDARIAIQAGAAGIIVSNHGARQLD--------YV 262 (367)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC---C-------HHHHHHHHHcCCCEEEECCCCCCCCC--------Cc
Confidence 0122222244678888889999999321 1 46678899999999999654321111 11
Q ss_pred cCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 171 ILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 171 ~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+.-.+.+.++++.+ .++||++.|||++..|+.+.+.. ||+|+|||.++.
T Consensus 263 ~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 263 PATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 23456777777764 25999999999999999999987 999999998864
No 123
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.58 E-value=2.7e-06 Score=76.05 Aligned_cols=142 Identities=12% Similarity=0.181 Sum_probs=94.0
Q ss_pred eEEEecC-CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 48 IAFQVGD-NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 48 ~~~Ql~g-~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
+..+-.| .+.++-.+.|+++.+.+ -++|-|- |..+ --.++.|+....+-.+.+.+. +.-|.-=+.
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlE-------Vi~d--~~~llpd~~~tv~aa~~L~~~-Gf~vlpyc~--- 131 (250)
T PRK00208 65 LLPNTAGCRTAEEAVRTARLAREALGTNWIKLE-------VIGD--DKTLLPDPIETLKAAEILVKE-GFVVLPYCT--- 131 (250)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEE-------EecC--CCCCCcCHHHHHHHHHHHHHC-CCEEEEEeC---
Confidence 3344333 57888999999998853 4666654 1111 113555555444444443221 322221111
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL 205 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l 205 (311)
++ ...++++++.|++.|..+|..- | +| .+..+++.++.+++.. ++|||..|||.+++|+.+++
T Consensus 132 --~d-----~~~ak~l~~~G~~~vmPlg~pI---G-sg-----~gi~~~~~i~~i~e~~-~vpVIveaGI~tpeda~~Am 194 (250)
T PRK00208 132 --DD-----PVLAKRLEEAGCAAVMPLGAPI---G-SG-----LGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAM 194 (250)
T ss_pred --CC-----HHHHHHHHHcCCCEeCCCCcCC---C-CC-----CCCCCHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHH
Confidence 11 4789999999999996665542 1 11 1335788999999985 89999999999999999999
Q ss_pred hh-cCEEEEehhhhh
Q psy2386 206 NY-IDGVMLGREAYK 219 (311)
Q Consensus 206 ~~-adgVmigRa~l~ 219 (311)
+. ||||++|+|...
T Consensus 195 elGAdgVlV~SAItk 209 (250)
T PRK00208 195 ELGADAVLLNTAIAV 209 (250)
T ss_pred HcCCCEEEEChHhhC
Confidence 87 999999999864
No 124
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.57 E-value=2.7e-06 Score=77.80 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=108.9
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH 121 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi 121 (311)
+..|+-..+...+|+.+.+.++...+.||..+-+++| .+++.-.++++++|+.+ +.++.+..
T Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3456777777778999998888888899999999865 13466678888998877 46777777
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.-+|+. ++..++++.+++.|+++|-- + .++.|++..+++++.. ++||.+.+.+.++.++
T Consensus 137 n~~~~~----~~a~~~~~~l~~~~i~~iEe-P---------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~~ 195 (265)
T cd03315 137 NRGWTP----KQAIRALRALEDLGLDYVEQ-P---------------LPADDLEGRAALARAT-DTPIMADESAFTPHDA 195 (265)
T ss_pred CCCcCH----HHHHHHHHHHHhcCCCEEEC-C---------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence 777764 35789999999999988832 0 1224789999999988 7999999999999999
Q ss_pred HHHHhh--cCEEEEehhhhhC
Q psy2386 202 DLHLNY--IDGVMLGREAYKN 220 (311)
Q Consensus 202 ~~~l~~--adgVmigRa~l~~ 220 (311)
.++++. +|.|++==.-.+.
T Consensus 196 ~~~i~~~~~d~v~~k~~~~GG 216 (265)
T cd03315 196 FRELALGAADAVNIKTAKTGG 216 (265)
T ss_pred HHHHHhCCCCEEEEecccccC
Confidence 999875 9999885443333
No 125
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.56 E-value=2.7e-06 Score=74.68 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=99.1
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE--EEEeccC
Q psy2386 49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRIGI 125 (311)
Q Consensus 49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--vKiR~g~ 125 (311)
.++|...|++.+.+.++.+.+.|+|.|++- +-+|.-. +...-.++++++++..+.|+. ++++-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~------------~~~~~~~~v~~i~~~~~~~v~v~lm~~~-- 67 (210)
T TIGR01163 2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP------------NLTFGPPVLEALRKYTDLPIDVHLMVEN-- 67 (210)
T ss_pred cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC------------CcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence 467788999999999999999999999996 3333321 222334566666665566643 44441
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------cc--ccC------CCC---------------------cCCC
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FL--KKL------NPK---------------------QNRK 168 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~--~G~------~g~---------------------~~~~ 168 (311)
..++++.+.++|++.|++|+... .. .|. +.. ....
T Consensus 68 --------~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 139 (210)
T TIGR01163 68 --------PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGF 139 (210)
T ss_pred --------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCC
Confidence 23567778889999988886420 00 000 000 0000
Q ss_pred C-CcCcH---HHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 169 I-PILKY---NFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 169 ~-~~~~~---~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
. ...+| +.+.++++.. +++|+.+.|||+ ++.+.++++. +|+|.+||+++..+.....+
T Consensus 140 tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d~~~~~ 206 (210)
T TIGR01163 140 GGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADDYKEVI 206 (210)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCHHHHH
Confidence 1 12234 3444455433 137999999996 7999998876 99999999998877644443
No 126
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.53 E-value=1.7e-06 Score=82.45 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCCCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeE
Q psy2386 43 AEEHPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDIT 118 (311)
Q Consensus 43 ~~~~p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvs 118 (311)
....|+-..+.+. +++++.++|+.+.+.||+.|.|.+|.+... .++++...++++++|+.+ +.++.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~ 193 (357)
T cd03316 124 RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLM 193 (357)
T ss_pred CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 3445666666555 599999999999999999999998754221 167888899999999987 56788
Q ss_pred EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198 (311)
Q Consensus 119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~ 198 (311)
+...-+|+. ++..++++.+++.|+.++-- ..++.+++..+++++.. ++||++.+.+.++
T Consensus 194 vDaN~~~~~----~~a~~~~~~l~~~~i~~iEq----------------P~~~~~~~~~~~l~~~~-~ipi~~dE~~~~~ 252 (357)
T cd03316 194 VDANGRWDL----AEAIRLARALEEYDLFWFEE----------------PVPPDDLEGLARLRQAT-SVPIAAGENLYTR 252 (357)
T ss_pred EECCCCCCH----HHHHHHHHHhCccCCCeEcC----------------CCCccCHHHHHHHHHhC-CCCEEeccccccH
Confidence 877767753 35789999999988877631 01224788899999987 7999999999999
Q ss_pred HHHHHHHhh--cCEEEEehhh
Q psy2386 199 KEIDLHLNY--IDGVMLGREA 217 (311)
Q Consensus 199 ~da~~~l~~--adgVmigRa~ 217 (311)
+|+.++++. +|.|.+--.-
T Consensus 253 ~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 253 WEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred HHHHHHHHhCCCCEEecCccc
Confidence 999999975 9999875333
No 127
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.53 E-value=3e-06 Score=80.09 Aligned_cols=113 Identities=15% Similarity=0.278 Sum_probs=75.0
Q ss_pred CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE
Q psy2386 72 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV 151 (311)
Q Consensus 72 ~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv 151 (311)
++.|-..+|.|.. ++++.+++. ++.|...+.. .+.++.+.+.|+|.|++
T Consensus 114 ~~~v~~~~G~p~~-------------------~~i~~l~~~-gi~v~~~v~s-----------~~~A~~a~~~G~D~iv~ 162 (330)
T PF03060_consen 114 PDVVSFGFGLPPP-------------------EVIERLHAA-GIKVIPQVTS-----------VREARKAAKAGADAIVA 162 (330)
T ss_dssp -SEEEEESSSC-H-------------------HHHHHHHHT-T-EEEEEESS-----------HHHHHHHHHTT-SEEEE
T ss_pred eEEEEeecccchH-------------------HHHHHHHHc-CCccccccCC-----------HHHHHHhhhcCCCEEEE
Confidence 3477777776642 345566553 7777776542 46688899999999999
Q ss_pred ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 152 HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 152 h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
-|.. -+|..|. ... --+.++.++++.+ ++|||+.|||.+.+++..++.. ||||++|+.++.-+.
T Consensus 163 qG~e--AGGH~g~---~~~-~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 163 QGPE--AGGHRGF---EVG-STFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp E-TT--SSEE------SSG--HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred eccc--cCCCCCc---ccc-ceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 8775 3554441 000 2467888999998 7999999999999999999987 999999999976554
No 128
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.53 E-value=3.1e-06 Score=81.45 Aligned_cols=136 Identities=13% Similarity=0.226 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~ 132 (311)
|.+++.+.++-. +.++|+|.|=|-..-+ +++.+.++++.+++.. +.+|.++-=.
T Consensus 149 g~~~~~~~~v~~-lv~aGvDvI~iD~a~g---------------~~~~~~~~v~~ik~~~p~~~vi~g~V~--------- 203 (404)
T PRK06843 149 SIDIDTIERVEE-LVKAHVDILVIDSAHG---------------HSTRIIELVKKIKTKYPNLDLIAGNIV--------- 203 (404)
T ss_pred eCCHHHHHHHHH-HHhcCCCEEEEECCCC---------------CChhHHHHHHHHHhhCCCCcEEEEecC---------
Confidence 556776666555 4457999988854432 2466788999999876 6777664221
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCC-CcCCCCCcCcHHHH---HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNP-KQNRKIPILKYNFV---YNLKKDFPELEIIINGGIKTKKEIDLHLNY- 207 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g-~~~~~~~~~~~~~i---~~i~~~~~~ipvi~nGgI~s~~da~~~l~~- 207 (311)
+.+-++.+.++|+|+|.+ |-+. .+.++ ......+..++..+ .++.+.. ++|||+-|||+++.|+.+.+..
T Consensus 204 -T~e~a~~l~~aGaD~I~v-G~g~--Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalG 278 (404)
T PRK06843 204 -TKEAALDLISVGADCLKV-GIGP--GSICTTRIVAGVGVPQITAICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_pred -CHHHHHHHHHcCCCEEEE-CCCC--CcCCcceeecCCCCChHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcC
Confidence 256788999999999986 3211 00000 00001122345544 5555555 6999999999999999999987
Q ss_pred cCEEEEehhhhh
Q psy2386 208 IDGVMLGREAYK 219 (311)
Q Consensus 208 adgVmigRa~l~ 219 (311)
||+||+|+.+.+
T Consensus 279 A~aVmvGs~~ag 290 (404)
T PRK06843 279 ADSVMIGNLFAG 290 (404)
T ss_pred CCEEEEcceeee
Confidence 999999999976
No 129
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.53 E-value=1.2e-05 Score=70.53 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=89.3
Q ss_pred CCeEEEec--CCCHHHHHHHHHHHHHcCCC--EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386 46 HPIAFQVG--DNEPKKLAKSAKIIQKWGYD--EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK 120 (311)
Q Consensus 46 ~p~~~Ql~--g~~~~~~~~aa~~~~~~g~d--~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK 120 (311)
..-.+||- +.+.+++.+.++.+.+.|.. .+=||--+..... -+..|--|-.+ +. -++.+++.. +..|.+.
T Consensus 27 g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~-~~~~gvHl~~~-~~---~~~~~r~~~~~~~ig~s 101 (201)
T PRK07695 27 EVDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALL-LNIHRVQLGYR-SF---SVRSVREKFPYLHVGYS 101 (201)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHH-cCCCEEEeCcc-cC---CHHHHHHhCCCCEEEEe
Confidence 45678888 45677888878777776543 3445522111000 00001111111 10 022333322 2334442
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
+. + .+.+..+++.|+|++.++.-... .+ ++ ..++.+|+.++++++.+ ++||++.||| ++++
T Consensus 102 ~~-------s----~e~a~~a~~~Gadyi~~g~v~~t---~~-k~--~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~ 162 (201)
T PRK07695 102 VH-------S----LEEAIQAEKNGADYVVYGHVFPT---DC-KK--GVPARGLEELSDIARAL-SIPVIAIGGI-TPEN 162 (201)
T ss_pred CC-------C----HHHHHHHHHcCCCEEEECCCCCC---CC-CC--CCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHH
Confidence 21 1 34467788999999976432210 01 00 12235789999999987 7999999999 9999
Q ss_pred HHHHHhh-cCEEEEehhhhhC
Q psy2386 201 IDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 201 a~~~l~~-adgVmigRa~l~~ 220 (311)
+.++++. +|+|++|++++..
T Consensus 163 ~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 163 TRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHcCCCEEEEEHHHhcC
Confidence 9999987 9999999999753
No 130
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.51 E-value=4.8e-06 Score=82.76 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=89.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCc
Q psy2386 52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINS 130 (311)
Q Consensus 52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~ 130 (311)
..|..++.+.++. .+.++|+|.|.|++.- -+...+.+.++.+++.. ++||.+ |.-.
T Consensus 235 avg~~~~~~~~~~-~l~~ag~d~i~id~a~---------------G~s~~~~~~i~~ik~~~~~~~v~a----G~V~--- 291 (495)
T PTZ00314 235 AISTRPEDIERAA-ALIEAGVDVLVVDSSQ---------------GNSIYQIDMIKKLKSNYPHVDIIA----GNVV--- 291 (495)
T ss_pred EECCCHHHHHHHH-HHHHCCCCEEEEecCC---------------CCchHHHHHHHHHHhhCCCceEEE----CCcC---
Confidence 4467787755554 4666899999999641 12233467788888875 566666 3111
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHH---HHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNF---VYNLKKDFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~---i~~i~~~~~~ipvi~nGgI~s~~da~~~ 204 (311)
..+-++.+.++|+|+|.+- |.++...... ..+...+.. +.++.+.. ++|||+.|||.++.|+.+.
T Consensus 292 ---t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~-----~~g~p~~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~kA 362 (495)
T PTZ00314 292 ---TADQAKNLIDAGADGLRIGMGSGSICITQEVC-----AVGRPQASAVYHVARYARER-GVPCIADGGIKNSGDICKA 362 (495)
T ss_pred ---CHHHHHHHHHcCCCEEEECCcCCcccccchhc-----cCCCChHHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHHH
Confidence 2466888999999999862 1111110000 011123344 33444445 7999999999999999999
Q ss_pred Hhh-cCEEEEehhhhhC
Q psy2386 205 LNY-IDGVMLGREAYKN 220 (311)
Q Consensus 205 l~~-adgVmigRa~l~~ 220 (311)
++. ||+||+|+.+.+-
T Consensus 363 la~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 363 LALGADCVMLGSLLAGT 379 (495)
T ss_pred HHcCCCEEEECchhccc
Confidence 987 9999999997653
No 131
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=6e-06 Score=71.48 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDF 133 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~ 133 (311)
.+++.+...|+-+.+.|+-+|-+| + + +=++++++.+++|+.==+.-..++.+. .-.
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-----------g-----------v-~dIkai~~~v~vPIIGIiKrd~~~s~v~ITp 86 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-----------G-----------V-EDIKAIRAVVDVPIIGIIKRDYPDSPVRITP 86 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-----------c-----------h-hhHHHHHhhCCCCeEEEEecCCCCCCceecc
Confidence 346778888888889999999998 1 1 114567777788874322222222211 001
Q ss_pred HHHHHHHHHHcCCCEEEEecCcc--------------------------------------------ccccCCCCcCCCC
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLKKLNPKQNRKI 169 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~--------------------------------------------~~~G~~g~~~~~~ 169 (311)
+.+=++.|.++|++.|.+.+..+ ++.||.+... ..
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~-~~ 165 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTE-KP 165 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCC-CC
Confidence 23445666677777666432100 1456665222 22
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
...|+.+++++.+ . +.+||+-|.+.||+++.+.++. |++|.||.++-+
T Consensus 166 ~~pDf~lvk~l~~-~-~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 166 TEPDFQLVKQLSD-A-GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred CCCcHHHHHHHHh-C-CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC
Confidence 2358999999998 3 7999999999999999999987 999999977643
No 132
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.47 E-value=7.4e-06 Score=80.61 Aligned_cols=141 Identities=18% Similarity=0.245 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~ 132 (311)
+-.++.+.++.. +.++|+|.|.|++.-+ +.+.+.+.++.+++.. ++||.++-=.
T Consensus 220 ~~~~~~~~r~~~-L~~aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v~--------- 274 (450)
T TIGR01302 220 GTREFDKERAEA-LVKAGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNVA--------- 274 (450)
T ss_pred cCchhHHHHHHH-HHHhCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeCC---------
Confidence 556777777775 4457999999985442 2245778888888874 7888884221
Q ss_pred HHHHHHHHHHHcCCCEEEEe--cC-ccccccCCCCcCCCCCcCcHHHHHHHH---HhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386 133 FVRDFVGTVSSAGCRTFIVH--AR-NAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKTKKEIDLHLN 206 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh--~R-t~~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~~ipvi~nGgI~s~~da~~~l~ 206 (311)
..+-++.+.++|+|+|.|. +. +....... ..+...+..+.+++ +.. ++|||+.|||+++.|+.+.++
T Consensus 275 -t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~-----~~g~p~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla 347 (450)
T TIGR01302 275 -TAEQAKALIDAGADGLRVGIGPGSICTTRIVA-----GVGVPQITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALA 347 (450)
T ss_pred -CHHHHHHHHHhCCCEEEECCCCCcCCccceec-----CCCccHHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHH
Confidence 2466888999999999764 11 11011000 01112345555554 344 799999999999999999998
Q ss_pred h-cCEEEEehhhhhCCcchHH
Q psy2386 207 Y-IDGVMLGREAYKNPFLMSN 226 (311)
Q Consensus 207 ~-adgVmigRa~l~~P~i~~~ 226 (311)
. ||.||+|+.+.+-.+...+
T Consensus 348 ~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 348 AGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred cCCCEEEECchhhcCCcCCCc
Confidence 7 9999999998776665544
No 133
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.47 E-value=4.6e-06 Score=74.36 Aligned_cols=137 Identities=15% Similarity=0.055 Sum_probs=91.0
Q ss_pred CCCH-HHHHHHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386 54 DNEP-KKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS 130 (311)
Q Consensus 54 g~~~-~~~~~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~ 130 (311)
|.++ +.=...++.+.+.|++.||+ |.|+|.. .+.+.+.+-++++++.+ .|+.+|+=+-...- +
T Consensus 69 G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~ 134 (221)
T PRK00507 69 GANTTAVKAFEAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-T 134 (221)
T ss_pred CCChHHHHHHHHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-C
Confidence 4444 33334455666789999996 5555543 35777777788888765 46677873321111 1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-c
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-I 208 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-a 208 (311)
.++....++.+.++|+|+|.-... +++ +.+..+.++.+++..+ +++|.++|||+|.+|+.++++. |
T Consensus 135 ~e~i~~a~~~~~~agadfIKTsTG------~~~------~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 135 DEEKVKACEIAKEAGADFVKTSTG------FST------GGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCC------CCC------CCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCc
Confidence 124678888899999997754322 210 1256777777777653 5999999999999999999976 8
Q ss_pred CEEEEehh
Q psy2386 209 DGVMLGRE 216 (311)
Q Consensus 209 dgVmigRa 216 (311)
+-+-..++
T Consensus 203 ~riGtS~~ 210 (221)
T PRK00507 203 TRLGTSAG 210 (221)
T ss_pred ceEccCcH
Confidence 87665544
No 134
>PLN02591 tryptophan synthase
Probab=98.46 E-value=6.2e-06 Score=74.82 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc------ccCccc--CChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~------~G~~Ll--~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~ 127 (311)
|.+...+.++.+.+.|+|.|||. =|+..-.-+| .--+|- -+.+.+.++++.+|+..++|+.+ -..++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElG--iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il--m~Y~N~ 89 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELG--VPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL--FTYYNP 89 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC--CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE--EecccH
Confidence 67889999999999999999995 4543322221 111111 24567888999998777888642 222221
Q ss_pred ------------------------CCcHHHHHHHHHHHHHcCCCEEEEe-cCcc---------c---------cccCCCC
Q psy2386 128 ------------------------INSYDFVRDFVGTVSSAGCRTFIVH-ARNA---------F---------LKKLNPK 164 (311)
Q Consensus 128 ------------------------~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~---------~---------~~G~~g~ 164 (311)
+-++++..++...+.+.|++.|.+- +-|. . ..|.+|.
T Consensus 90 i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 90 ILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred HHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 1112233344444444444444332 1111 0 1233433
Q ss_pred cCCCCCcCc-HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 165 QNRKIPILK-YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 165 ~~~~~~~~~-~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l 218 (311)
... . +.+ -+.++++++.. ++||+..-||+|++++.++++. ||||.||++++
T Consensus 170 ~~~-~-~~~~~~~i~~vk~~~-~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 170 RAS-V-SGRVESLLQELKEVT-DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred CcC-C-chhHHHHHHHHHhcC-CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 111 1 223 35588899875 8999999999999999999988 99999999986
No 135
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.44 E-value=5.7e-06 Score=75.67 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=105.6
Q ss_pred CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc------ccCccc--CChHHHHHHHHHHhccccce
Q psy2386 47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMRDSVEID 116 (311)
Q Consensus 47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~------~G~~Ll--~~~~~~~~iv~~v~~~~~~p 116 (311)
.++.=|... |.+...+.++.+.+.|+|.|||. =|...-..+| .--+|- -+.+.+.++++++|+..++|
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElG--iPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELG--IPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 466555544 56788999998999999999995 4544322221 111111 24567888999998877888
Q ss_pred eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--------------------------Ccc--------------
Q psy2386 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA-------------- 156 (311)
Q Consensus 117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--------------------------Rt~-------------- 156 (311)
+. +-..++.--.+ -..+|++.+.++|+|.+++|. -|.
T Consensus 94 ~v--lm~Y~N~i~~~-G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gF 170 (263)
T CHL00200 94 IV--IFTYYNPVLHY-GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGC 170 (263)
T ss_pred EE--EEecccHHHHh-CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCc
Confidence 63 23222210000 124566677777777776542 110
Q ss_pred ----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 157 ----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 157 ----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
...|.+|... ..+.---+.++++++.. ++||..-+||+|++++.++.+. ||||.+|++++.
T Consensus 171 IY~vS~~GvTG~~~-~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 171 IYLVSTTGVTGLKT-ELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred EEEEcCCCCCCCCc-cccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0124444321 11111236788888876 8999999999999999999987 999999999965
No 136
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.44 E-value=1.5e-06 Score=78.57 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+.+.|++.|++-.-++. .| ...+.+.|+++.+.+ ++||.+.|||+|.+|+++++.. |+.|
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g---------~~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kv 101 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FG---------RGSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARV 101 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CC---------CCccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 4578999999999999998765531 12 125789999999998 8999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.+|.+++.||.++.++.+.+
T Consensus 102 viGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEH 121 (241)
T ss_pred EECchHhCCHHHHHHHHHHh
Confidence 99999999999999987654
No 137
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.43 E-value=2.3e-06 Score=76.50 Aligned_cols=89 Identities=16% Similarity=0.282 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.++|....+...| .+.+++.++++++.+ ++|+...|||++.+|++++++. ||.|
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g---------~~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~v 98 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEG---------GPVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRV 98 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC---------CCCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3679999999999999999766543222 125889999999988 7999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
++|..++.+|..+.++.+.+
T Consensus 99 vlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 99 IIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred EEChHHhhCHHHHHHHHHHh
Confidence 99999999999998887765
No 138
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.41 E-value=1.2e-05 Score=72.94 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=99.1
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE--EE
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV--KH 121 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv--Ki 121 (311)
-..|+++|+.-+|+..-. .++...|+|+|-+|.-|=.. ++..| -+.-+...+.+.-+.+.. ++.+.. +.
T Consensus 78 ~~~p~GvnvL~nd~~aal---~iA~a~ga~FIRv~~~~g~~-~~d~G---~~~~~a~e~~r~r~~l~~--~v~i~adV~~ 148 (257)
T TIGR00259 78 VSIPLGINVLRNDAVAAL---AIAMAVGAKFIRVNVLTGVY-ASDQG---IIEGNAGELIRYKKLLGS--EVKILADIVV 148 (257)
T ss_pred cCCCeeeeeecCCCHHHH---HHHHHhCCCEEEEccEeeeE-ecccc---cccccHHHHHHHHHHcCC--CcEEEeceee
Confidence 346899999998886322 34446799999999655433 22221 222333444444444442 343332 22
Q ss_pred eccCC-CCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386 122 RIGID-DINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 122 R~g~~-~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
..+.. .+. .+.+.++.....| +|+|+|+|... | .+.||+.++++++..+++||+.+|||+ ++
T Consensus 149 kh~~~l~~~---~~~e~a~~~~~~~~aDavivtG~~T---G---------~~~d~~~l~~vr~~~~~~PvllggGvt-~e 212 (257)
T TIGR00259 149 KHAVHLGNR---DLESIALDTVERGLADAVILSGKTT---G---------TEVDLELLKLAKETVKDTPVLAGSGVN-LE 212 (257)
T ss_pred cccCcCCCC---CHHHHHHHHHHhcCCCEEEECcCCC---C---------CCCCHHHHHHHHhccCCCeEEEECCCC-HH
Confidence 22221 122 2467777777666 99999998752 2 136999999999877679999999996 78
Q ss_pred HHHHHHhhcCEEEEehhhh
Q psy2386 200 EIDLHLNYIDGVMLGREAY 218 (311)
Q Consensus 200 da~~~l~~adgVmigRa~l 218 (311)
.+.++++.||||.+|+++-
T Consensus 213 Nv~e~l~~adGviVgS~~K 231 (257)
T TIGR00259 213 NVEELLSIADGVIVATTIK 231 (257)
T ss_pred HHHHHHhhCCEEEECCCcc
Confidence 8888888899999999975
No 139
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.39 E-value=1.6e-06 Score=78.00 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=75.4
Q ss_pred HHHHHHHHHH-cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 134 VRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 134 ~~e~~~~l~~-~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
..+.++.+.+ .|++.++|-.-++...| .+.+++.|+++.+.+ ++||...|||+|.+|++++++. |+-|
T Consensus 33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 33 AEESIAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred HHHHHHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 4689999999 79999998765542222 235899999999987 8999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.+|+.++.||.+++++.+.+
T Consensus 103 vigt~a~~~~~~l~~~~~~f 122 (234)
T PRK13587 103 IVGTKGIQDTDWLKEMAHTF 122 (234)
T ss_pred EECchHhcCHHHHHHHHHHc
Confidence 99999999999999998764
No 140
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.37 E-value=1.3e-05 Score=73.24 Aligned_cols=150 Identities=11% Similarity=0.152 Sum_probs=97.1
Q ss_pred CCCCeEEEecCCCHH-------HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---c
Q psy2386 44 EEHPIAFQVGDNEPK-------KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---V 113 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~-------~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~ 113 (311)
.+.++++.+.+..|. .+...++.+.+.|+++|++-.- .|+ ..+.+.+ +.++++++. .
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 356788888544332 3445566777889999988532 111 1122333 444555443 3
Q ss_pred cceeEEEEe-----ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe
Q psy2386 114 EIDITVKHR-----IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE 188 (311)
Q Consensus 114 ~~pvsvKiR-----~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip 188 (311)
++|+.|..- ++.. +.+...+.++...+.|+|+|.+. +. .+.+.++++.+.. .+|
T Consensus 136 g~~liv~~~~~Gvh~~~~---~~~~~~~~~~~a~~~GADyikt~--------~~---------~~~~~l~~~~~~~-~iP 194 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDR---DPELVAHAARLGAELGADIVKTP--------YT---------GDIDSFRDVVKGC-PAP 194 (258)
T ss_pred CCCEEEEEeccCcccccc---cHHHHHHHHHHHHHHCCCEEecc--------CC---------CCHHHHHHHHHhC-CCc
Confidence 788777432 2221 12234444678889999999753 10 2678899998877 699
Q ss_pred EEEecCCC--CHHHHHHHH----hh-cCEEEEehhhhhCCcchHHh
Q psy2386 189 IIINGGIK--TKKEIDLHL----NY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 189 vi~nGgI~--s~~da~~~l----~~-adgVmigRa~l~~P~i~~~~ 227 (311)
|++.|||+ |.+++.+.+ +. ++|+.+||+++..+.....+
T Consensus 195 Vva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 195 VVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGIT 240 (258)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHH
Confidence 99999999 777776666 44 99999999999877744433
No 141
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.37 E-value=1.9e-05 Score=71.60 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=96.5
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE---
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH--- 121 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi--- 121 (311)
.-|+++|+.-+|+..-. .++...|+|+|-+|.-|=..- ... | .+..+...+.+.-+.+.. ++.+...+
T Consensus 80 ~~p~GVnvL~nd~~aal---aiA~A~ga~FIRv~~~~g~~~-~d~--G-~~~~~a~e~~r~R~~l~a--~v~ilaDV~~k 150 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAAL---AIAAATGADFIRVNVFVGAYV-TDE--G-IIEGCAGELLRYRKRLGA--DVKILADVHVK 150 (254)
T ss_pred CCCEEeeeecCCCHHHH---HHHHHhCCCEEEecCEEceec-ccC--c-cccccHHHHHHHHHHcCC--CeEEEeeechh
Confidence 57999999998876422 334467899999996654332 111 1 122222222322222222 23333222
Q ss_pred -eccCCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386 122 -RIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 122 -R~g~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
...... .+ +.+.++.. +..++|+|+|+|... | .+.+.+.++++++.++ +||+.++|++ ++
T Consensus 151 h~~~l~~-~~---~~~~~~~a~~~~~aDaviVtG~~T---G---------~~~~~~~l~~vr~~~~-~PVlvGSGvt-~~ 212 (254)
T PF03437_consen 151 HSSPLAT-RD---LEEAAKDAVERGGADAVIVTGKAT---G---------EPPDPEKLKRVREAVP-VPVLVGSGVT-PE 212 (254)
T ss_pred hcccCCC-CC---HHHHHHHHHHhcCCCEEEECCccc---C---------CCCCHHHHHHHHhcCC-CCEEEecCCC-HH
Confidence 222222 12 33445444 778999999998752 1 1368899999999995 9999999986 68
Q ss_pred HHHHHHhhcCEEEEehhhhhCCcc
Q psy2386 200 EIDLHLNYIDGVMLGREAYKNPFL 223 (311)
Q Consensus 200 da~~~l~~adgVmigRa~l~~P~i 223 (311)
.+.+++..|||+.||+.+-.|-.+
T Consensus 213 Ni~~~l~~ADG~IVGS~~K~~G~~ 236 (254)
T PF03437_consen 213 NIAEYLSYADGAIVGSYFKKDGKW 236 (254)
T ss_pred HHHHHHHhCCEEEEeeeeeeCCEe
Confidence 999999889999999987655544
No 142
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.37 E-value=2.3e-06 Score=78.15 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+.+.|++.|++..-.+.-.+ ...+++.++++.+.+ ++||++.|||+|.+|+.+++.. +++|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~v 100 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKV 100 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEE
Confidence 4689999999999999998754331111 125899999999986 8999999999999999999976 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.+|++++.+|.++.++.+.+
T Consensus 101 vigs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 101 SINTAALEDPDLITEAAERF 120 (258)
T ss_pred EEChHHhcCHHHHHHHHHHh
Confidence 99999999999999987654
No 143
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.37 E-value=2e-05 Score=69.07 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=97.6
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
++.+.|..-|+..+.++++.+.+.|++.|.+.+ ..|.. .+...-.++++.+++.++.|+.|.+-..
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~v~l~~~- 67 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV------------PNLTFGPPVVKALRKHTDLPLDVHLMVE- 67 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC------------CccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence 356788899999999999999999999999942 11111 0111112455555554445554443331
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------ccc--c------------------------C---CCCcCC-
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FLK--K------------------------L---NPKQNR- 167 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~~--G------------------------~---~g~~~~- 167 (311)
+ ..++++.+.++|+|.+++|+... ... | | .+....
T Consensus 68 -d------~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~ 140 (211)
T cd00429 68 -N------PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGF 140 (211)
T ss_pred -C------HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 13456667788888888875420 000 0 0 000000
Q ss_pred CCCcCcH---HHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 168 KIPILKY---NFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 168 ~~~~~~~---~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
.....+| +.+.++++..+ ++|+++-|||+. +++.++++. +|+|.+||+++..+.....+
T Consensus 141 tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~~~~~ 207 (211)
T cd00429 141 GGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDYAEAI 207 (211)
T ss_pred CCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCHHHHH
Confidence 0112333 34555555442 489999999996 999999976 99999999998877654443
No 144
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.37 E-value=1.9e-05 Score=78.60 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE-EeccCCCCCcH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK-HRIGIDDINSY 131 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK-iR~g~~~~~~~ 131 (311)
|..++.+.++.. +.++|+|.|-|.+ +. -+...+-+.++.+|+.. +.+|.++ +-
T Consensus 244 g~~~~~~~r~~~-l~~ag~d~i~iD~--~~-------------g~~~~~~~~i~~ik~~~p~~~vi~g~v~--------- 298 (505)
T PLN02274 244 GTRESDKERLEH-LVKAGVDVVVLDS--SQ-------------GDSIYQLEMIKYIKKTYPELDVIGGNVV--------- 298 (505)
T ss_pred cCCccHHHHHHH-HHHcCCCEEEEeC--CC-------------CCcHHHHHHHHHHHHhCCCCcEEEecCC---------
Confidence 556777766665 4457999988865 21 12345568888998876 5677664 21
Q ss_pred HHHHHHHHHHHHcCCCEEEEe--cCc-cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVH--ARN-AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY- 207 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh--~Rt-~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~- 207 (311)
+.+-++.+.++|+|.|.+. +.. ...+...+. .......+..+.++++.. ++|||+-|||.++.|+.+.|+.
T Consensus 299 --t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~--g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~G 373 (505)
T PLN02274 299 --TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAV--GRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLG 373 (505)
T ss_pred --CHHHHHHHHHcCcCEEEECCCCCccccCcccccc--CCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcC
Confidence 2466888999999999773 221 101100000 000123566688888877 7999999999999999999987
Q ss_pred cCEEEEehhhhhC
Q psy2386 208 IDGVMLGREAYKN 220 (311)
Q Consensus 208 adgVmigRa~l~~ 220 (311)
||+||+|+.+..-
T Consensus 374 A~~V~vGs~~~~t 386 (505)
T PLN02274 374 ASTVMMGSFLAGT 386 (505)
T ss_pred CCEEEEchhhccc
Confidence 9999999998653
No 145
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.35 E-value=1.1e-05 Score=75.44 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=95.5
Q ss_pred CCCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.++|+.|.|.+..+ +.+.+..+.+.+.+++.|-+..|.|.. ++.+++ .++.|...+.
T Consensus 54 tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~---------------------~~~lk~-~Gi~v~~~v~ 111 (320)
T cd04743 54 GDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQ---------------------ARALEA-IGISTYLHVP 111 (320)
T ss_pred cCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHH---------------------HHHHHH-CCCEEEEEeC
Confidence 47899999965322 223445566777889999888766631 244554 3777776543
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH-HHHHHhC-----CCCeEEEecCCC
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV-YNLKKDF-----PELEIIINGGIK 196 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i-~~i~~~~-----~~ipvi~nGgI~ 196 (311)
. .+.++++++.|+|.|++.|..+ .|..|... ...-|..+ ..+.+.. .++|||+.|||.
T Consensus 112 s-----------~~~A~~a~~~GaD~vVaqG~EA--GGH~G~~~---t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~ 175 (320)
T cd04743 112 S-----------PGLLKQFLENGARKFIFEGREC--GGHVGPRS---SFVLWESAIDALLAANGPDKAGKIHLLFAGGIH 175 (320)
T ss_pred C-----------HHHHHHHHHcCCCEEEEecCcC--cCCCCCCC---chhhHHHHHHHHHHhhcccccCCccEEEEcCCC
Confidence 2 4678999999999999998873 55544211 11233332 2332211 169999999999
Q ss_pred CHHHHHHHHhh-c--------CEEEEehhhhhCCcc
Q psy2386 197 TKKEIDLHLNY-I--------DGVMLGREAYKNPFL 223 (311)
Q Consensus 197 s~~da~~~l~~-a--------dgVmigRa~l~~P~i 223 (311)
+...+..++.. + +||++|+.++.-+..
T Consensus 176 dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 176 DERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred CHHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence 99999888875 6 899999999775544
No 146
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.34 E-value=6.8e-05 Score=65.82 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=97.0
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+..+++-+.-.||..+ .++.+.++|+|.|-+++-+|. ..+.++++.+++ .++++.+-+-..
T Consensus 52 ~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~-~g~~~~~~~~~~ 112 (206)
T TIGR03128 52 DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKK-HGKEVQVDLINV 112 (206)
T ss_pred CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHH-cCCEEEEEecCC
Confidence 3456666543466644 456677899999999865431 345677777776 488887753211
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~ 204 (311)
++ ..+-++.+.+.|+|++.+++.+. + . ...+..++.++++++.++..++...||| +++.+.++
T Consensus 113 ~t-------~~~~~~~~~~~g~d~v~~~pg~~---~---~---~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~ 175 (206)
T TIGR03128 113 KD-------KVKRAKELKELGADYIGVHTGLD---E---Q---AKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDV 175 (206)
T ss_pred CC-------hHHHHHHHHHcCCCEEEEcCCcC---c---c---cCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHH
Confidence 11 24556666788999999874321 1 0 1112356788888887755666668999 88999999
Q ss_pred Hhh-cCEEEEehhhhhCCcc
Q psy2386 205 LNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 205 l~~-adgVmigRa~l~~P~i 223 (311)
++. +|+|.+||+++..+..
T Consensus 176 ~~~Ga~~v~vGsai~~~~d~ 195 (206)
T TIGR03128 176 IKLGPDIVIVGGAITKAADP 195 (206)
T ss_pred HHcCCCEEEEeehhcCCCCH
Confidence 976 9999999999876653
No 147
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.34 E-value=2.6e-05 Score=70.79 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc-----cC-ccc--CChHHHHHHHHHHhcc-ccceeEEEEeccC-
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF-----GA-ILM--TKPLLVSDCIKAMRDS-VEIDITVKHRIGI- 125 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~-----G~-~Ll--~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~- 125 (311)
+++...++++.+.+.|+|.|||. -|.+.-.-+|- +. +|- -.++.+.++++.+++. .++|+.+=.-...
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELG--vPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi 106 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELG--VPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI 106 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEec--CCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH
Confidence 67899999999999999999995 45443222210 11 111 2467888999999954 6788765322110
Q ss_pred -CC--------------------CCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------------ccccCCCCc
Q psy2386 126 -DD--------------------INSYDFVRDFVGTVSSAGCRTFIVHARNA-------------------FLKKLNPKQ 165 (311)
Q Consensus 126 -~~--------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------------~~~G~~g~~ 165 (311)
.. +-..++..++.+.+++.|++.|-+-+-|. ...|.+|.+
T Consensus 107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~ 186 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGAR 186 (265)
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCC
Confidence 00 01122223344444444444443322111 012444543
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 218 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l 218 (311)
...... --+.++++++.. ++||...=||+|++++.++.+.||||.+|+++.
T Consensus 187 ~~~~~~-~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV 237 (265)
T COG0159 187 NPVSAD-VKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEAADGVIVGSAIV 237 (265)
T ss_pred cccchh-HHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHhCCeEEEcHHHH
Confidence 321111 246788999887 899999999999999999998899999999983
No 148
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.32 E-value=2.2e-05 Score=68.32 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcc----ccccCcc-----cCcccCChHHHHHHHH--------
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN----RVQNGFF-----GAILMTKPLLVSDCIK-------- 107 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~----~v~~~~~-----G~~Ll~~~~~~~~iv~-------- 107 (311)
..|+++=+-+.+++++.+.++.+.+.|++.|++.+--|.. +..+..+ |+...-+++.+.+.+.
T Consensus 3 ~~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 3 AQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred cCcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 4577777889999999999999999999999997654411 0111111 3333344444443332
Q ss_pred ---------HHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386 108 ---------AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178 (311)
Q Consensus 108 ---------~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~ 178 (311)
..++ .+.++.+ |... ..| +..+.++|+|+|.+.+-. +...++++
T Consensus 83 p~~~~~~~~~~~~-~~~~~i~----gv~t------~~e-~~~A~~~Gad~i~~~p~~---------------~~g~~~~~ 135 (190)
T cd00452 83 PGLDPEVVKAANR-AGIPLLP----GVAT------PTE-IMQALELGADIVKLFPAE---------------AVGPAYIK 135 (190)
T ss_pred CCCCHHHHHHHHH-cCCcEEC----CcCC------HHH-HHHHHHCCCCEEEEcCCc---------------ccCHHHHH
Confidence 2222 2333332 3321 223 455578999999885321 12457888
Q ss_pred HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l 218 (311)
.+++.+|++|+++.||| +++++.++++. +|+|.++++++
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 88888777999999999 99999999987 99999999987
No 149
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.32 E-value=3.4e-05 Score=68.59 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe------ccCC-------
Q psy2386 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------IGID------- 126 (311)
Q Consensus 60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------~g~~------- 126 (311)
..+.++.+.+.|.|+|-|. ++.--+.+.+.++++++|+.. +|+.+-.. .+.|
T Consensus 16 ~~~~~~~~~~~gtdai~vG--------------GS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIG--------------GSQGVTYEKTDTLIEALRRYG-LPIILFPSNPTNVSRDADALFFPSV 80 (223)
T ss_pred cHHHHHHHHhcCCCEEEEc--------------CCCcccHHHHHHHHHHHhccC-CCEEEeCCCccccCcCCCEEEEEEe
Confidence 3456667778899999873 344345678899999999864 89876321 1111
Q ss_pred --CCCc-H--HHHHHHHHHHHHcCC-----CEEEEecCc--------c-----------------cccc-------CCCC
Q psy2386 127 --DINS-Y--DFVRDFVGTVSSAGC-----RTFIVHARN--------A-----------------FLKK-------LNPK 164 (311)
Q Consensus 127 --~~~~-~--~~~~e~~~~l~~~G~-----~~itvh~Rt--------~-----------------~~~G-------~~g~ 164 (311)
..+. + ..-.+.+..+.+.+. .++++.+.. . .+-| ++|.
T Consensus 81 lNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~ 160 (223)
T TIGR01768 81 LNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSG 160 (223)
T ss_pred ecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 0111 1 111344555554442 233333110 0 0011 1221
Q ss_pred cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
+..+.+.+.++++++.+.++|++..|||+|+++++++++. ||+|++|..++.||..+.++
T Consensus 161 ---~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 161 ---APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred ---CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHHh
Confidence 2345678999999998646999999999999999999985 99999999999998776654
No 150
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.32 E-value=2.6e-05 Score=69.21 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 172 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
.+.+.++++++.+.++|++..|||+|+++++++++. ||+|.+|.+++.||..+.++
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHH
Confidence 578999999997536999999999999999999985 99999999999999888765
No 151
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.32 E-value=1.5e-05 Score=76.17 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
+|....+.++.+.++|+|.|-|+.-- +...+.+. -.+|..+.++++. .++||.+ |.-. ..
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt-----~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~----G~V~------t~ 199 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTL-----VSAEHVST-SGEPLNLKEFIGE----LDVPVIA----GGVN------DY 199 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCC-CCCHHHHHHHHHH----CCCCEEE----eCCC------CH
Confidence 45567777888899999999998211 12222111 1246655555443 5789976 2211 13
Q ss_pred HHHHHHHHcCCCEEEEecCcc--ccccCCCCcCCCCCcCcHHHHHHHHHh-------CC--CCeEEEecCCCCHHHHHHH
Q psy2386 136 DFVGTVSSAGCRTFIVHARNA--FLKKLNPKQNRKIPILKYNFVYNLKKD-------FP--ELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~--~~~G~~g~~~~~~~~~~~~~i~~i~~~-------~~--~ipvi~nGgI~s~~da~~~ 204 (311)
+-++.+.+.|+|.|.+ |+.. ...+..| ........+.++++. .. .+|||+.|||.+..|+.+.
T Consensus 200 e~A~~~~~aGaDgV~~-G~gg~~~~~~~lg-----~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kA 273 (369)
T TIGR01304 200 TTALHLMRTGAAGVIV-GPGGANTTRLVLG-----IEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKA 273 (369)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCcccccccC-----CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHH
Confidence 4566667799999983 3321 1111111 011223344444322 21 3899999999999999999
Q ss_pred Hhh-cCEEEEehhhhh
Q psy2386 205 LNY-IDGVMLGREAYK 219 (311)
Q Consensus 205 l~~-adgVmigRa~l~ 219 (311)
+.. ||+||+|+++..
T Consensus 274 lAlGAdaV~iGt~~a~ 289 (369)
T TIGR01304 274 IACGADAVVLGSPLAR 289 (369)
T ss_pred HHcCCCEeeeHHHHHh
Confidence 987 999999999876
No 152
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.31 E-value=1.5e-06 Score=78.03 Aligned_cols=89 Identities=18% Similarity=0.308 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.+++..-++...| .+.+++.|+++.+.+ .+||...|||+|.+|++++++. |+.|
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa~~g---------~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAAKEG---------RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRV 99 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHHCCT---------HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCcccC---------chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEE
Confidence 3578999999999999998755432222 125889999999998 6999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.+|+.++.||.++.++.+.+
T Consensus 100 vigt~~~~~~~~l~~~~~~~ 119 (229)
T PF00977_consen 100 VIGTEALEDPELLEELAERY 119 (229)
T ss_dssp EESHHHHHCCHHHHHHHHHH
T ss_pred EeChHHhhchhHHHHHHHHc
Confidence 99999999999999988754
No 153
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.31 E-value=9.7e-06 Score=77.55 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
++....+-++.+.++|+|.|-++..-.. ..++..- .++..+.++++. .++||.+ |.-. ..
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~-----~~h~~~~-~~~~~i~~~ik~----~~ipVIa----G~V~------t~ 198 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVS-----AEHVSKE-GEPLNLKEFIYE----LDVPVIV----GGCV------TY 198 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchh-----hhccCCc-CCHHHHHHHHHH----CCCCEEE----eCCC------CH
Confidence 4555667777788999999999843211 1111110 145554444443 4789876 2111 14
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-------C--CCCeEEEecCCCCHHHHHHHHh
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-------F--PELEIIINGGIKTKKEIDLHLN 206 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-------~--~~ipvi~nGgI~s~~da~~~l~ 206 (311)
+-++.+.++|+|.|.+ |+... .+.........+..-+..+.++++. . .++|||+.|||.+..|+.+.+.
T Consensus 199 e~A~~l~~aGAD~V~V-G~G~G-s~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla 276 (368)
T PRK08649 199 TTALHLMRTGAAGVLV-GIGPG-AACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA 276 (368)
T ss_pred HHHHHHHHcCCCEEEE-CCCCC-cCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH
Confidence 5677778899999977 55320 0111000000011223344444321 1 1489999999999999999998
Q ss_pred h-cCEEEEehhhhhCCc
Q psy2386 207 Y-IDGVMLGREAYKNPF 222 (311)
Q Consensus 207 ~-adgVmigRa~l~~P~ 222 (311)
. ||+||+|+.+..-..
T Consensus 277 lGAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 277 CGADAVMLGSPLARAAE 293 (368)
T ss_pred cCCCeecccchhccccc
Confidence 7 999999999977433
No 154
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.26 E-value=4.7e-06 Score=79.30 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC-CCCCcCcH
Q psy2386 97 TKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKY 174 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~-~~~~~~~~ 174 (311)
.+++-+.+.|+.+|+.. ++||+||+-.+... ..++..+.++|+|+|+|.|... -.|.+|..- ...+.+-.
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~-------~~~~~~~~~ag~D~ItIDG~~G-GTGAap~~~~d~~GlP~~ 256 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGV-------EDIAAGAAKAGADFITIDGAEG-GTGAAPLTSMDHVGLPTE 256 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTH-------HHHHHHHHHTT-SEEEEE-TT----SSEECCHHHHC---HH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcH-------HHHHHhhhhccCCEEEEeCCCC-CCCCCchhHHhhCCCcHH
Confidence 56788999999999988 89999999876332 1233337899999999998753 112221100 00111111
Q ss_pred HHHHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 175 NFVYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 175 ~~i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l 218 (311)
..+.++.+. + .++.+++.||+.|+.|+.+.+.. ||+|.+||++|
T Consensus 257 ~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 257 YALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp HHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 123333221 1 14899999999999999999987 99999999986
No 155
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.22 E-value=2.8e-05 Score=76.89 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=93.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCc
Q psy2386 52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINS 130 (311)
Q Consensus 52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~ 130 (311)
+.|-.++.. +.++.+.+.|+|.|-|...- | .-..+.++++.+|+.. +.+|.+ |.-.
T Consensus 221 av~~~~~~~-~~a~~Lv~aGvd~i~~D~a~--------~-------~~~~~~~~i~~ik~~~p~~~v~a----gnv~--- 277 (479)
T PRK07807 221 AVGINGDVA-AKARALLEAGVDVLVVDTAH--------G-------HQEKMLEALRAVRALDPGVPIVA----GNVV--- 277 (479)
T ss_pred hhccChhHH-HHHHHHHHhCCCEEEEeccC--------C-------ccHHHHHHHHHHHHHCCCCeEEe----eccC---
Confidence 334333433 33344455688887665221 1 1466888999999876 667766 2111
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHHHHHHHH---hCCCCeEEEecCCCCHHHHHHH
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~---~~~~ipvi~nGgI~s~~da~~~ 204 (311)
+.+-++.+.++|+|.|-|- |.-++.+++.|- +..++..+.++++ .. ++|||+-|||.++.|+.+.
T Consensus 278 ---t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~-----~~p~~~av~~~~~~~~~~-~~~via~ggi~~~~~~~~a 348 (479)
T PRK07807 278 ---TAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGV-----GRPQFSAVLECAAAAREL-GAHVWADGGVRHPRDVALA 348 (479)
T ss_pred ---CHHHHHHHHHcCCCEEEECccCCcccccccccCC-----chhHHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHH
Confidence 2567888999999999863 222234444432 2247888888877 44 6999999999999999999
Q ss_pred Hhh-cCEEEEehhhhhCC
Q psy2386 205 LNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 205 l~~-adgVmigRa~l~~P 221 (311)
+.. ||+||+|+.+.+-.
T Consensus 349 l~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 349 LAAGASNVMIGSWFAGTY 366 (479)
T ss_pred HHcCCCeeeccHhhccCc
Confidence 987 99999999986544
No 156
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.21 E-value=4.6e-05 Score=75.77 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=94.0
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID 126 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~ 126 (311)
.+-...+.+|+. .+.++.+.++|+|.|=++.. . .+...+.+.++.+++.. +.||.++-=.
T Consensus 218 ~V~aai~~~~~~-~e~a~~L~~agvdvivvD~a--~-------------g~~~~vl~~i~~i~~~~p~~~vi~g~v~--- 278 (486)
T PRK05567 218 RVGAAVGVGADN-EERAEALVEAGVDVLVVDTA--H-------------GHSEGVLDRVREIKAKYPDVQIIAGNVA--- 278 (486)
T ss_pred EEEeecccCcch-HHHHHHHHHhCCCEEEEECC--C-------------CcchhHHHHHHHHHhhCCCCCEEEeccC---
Confidence 444455656654 45566677789998855411 1 12244667788888876 7888883211
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCC-CcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCHHHHHH
Q psy2386 127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP-KQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g-~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~~da~~ 203 (311)
..+-++.+.++|+|+|.+-.... ..++ ......+...++.+.++++.. .++|||+.|||+++.|+.+
T Consensus 279 -------t~e~a~~l~~aGad~i~vg~g~g---s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~k 348 (486)
T PRK05567 279 -------TAEAARALIEAGADAVKVGIGPG---SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAK 348 (486)
T ss_pred -------CHHHHHHHHHcCCCEEEECCCCC---ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHH
Confidence 24668888999999997621100 0000 001112234677777776643 2699999999999999999
Q ss_pred HHhh-cCEEEEehhhhhC
Q psy2386 204 HLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 204 ~l~~-adgVmigRa~l~~ 220 (311)
.++. ||.||+|+.+.+-
T Consensus 349 Ala~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 349 ALAAGASAVMLGSMLAGT 366 (486)
T ss_pred HHHhCCCEEEECcccccc
Confidence 9987 9999999887543
No 157
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.20 E-value=7.8e-05 Score=67.93 Aligned_cols=189 Identities=16% Similarity=0.190 Sum_probs=108.8
Q ss_pred CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc-----c-Cccc--CChHHHHHHHHHHh-ccccc
Q psy2386 47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF-----G-AILM--TKPLLVSDCIKAMR-DSVEI 115 (311)
Q Consensus 47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~-----G-~~Ll--~~~~~~~~iv~~v~-~~~~~ 115 (311)
.++.=|... |.+.+.++++.+.+.|+|.|||. =|...-.-+|- . -+|- -+.+.+.++++.++ +..++
T Consensus 11 ~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiG--iPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~ 88 (259)
T PF00290_consen 11 ALIPYITAGYPDLETTLEILKALEEAGADIIEIG--IPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDI 88 (259)
T ss_dssp EEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCC
Confidence 355555544 55889999999999999999995 34433222210 0 0010 24677888999999 77788
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE-------------------------e-cCcc-------------
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV-------------------------H-ARNA------------- 156 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv-------------------------h-~Rt~------------- 156 (311)
|+.+=.- ++.--.+ -..+|++.+.++|++.+.+ - +.|.
T Consensus 89 pivlm~Y--~N~i~~~-G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g 165 (259)
T PF00290_consen 89 PIVLMTY--YNPIFQY-GIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG 165 (259)
T ss_dssp EEEEEE---HHHHHHH--HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS
T ss_pred CEEEEee--ccHHhcc-chHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc
Confidence 9765321 1100000 0223555555555555543 1 1111
Q ss_pred -----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386 157 -----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 157 -----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
...|.+|.... .+..--+.++++++.. ++||...=||+|++++.++...||||.||++++ +.+.+.
T Consensus 166 FiY~vs~~GvTG~~~~-~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa~v------~~i~~~- 236 (259)
T PF00290_consen 166 FIYLVSRMGVTGSRTE-LPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLAAGADGVIVGSAFV------KIIEEN- 236 (259)
T ss_dssp EEEEESSSSSSSTTSS-CHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHHTTSSEEEESHHHH------HHHHHT-
T ss_pred EEEeeccCCCCCCccc-chHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHHccCCEEEECHHHH------HHHHHc-
Confidence 01233333110 1111136788999887 899999999999999999996699999999984 344321
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2386 232 YSNLPQYKIPTRIDIINRMILYIRQQ 257 (311)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
..+..+.++.+.+++.++
T Consensus 237 --------~~~~~~~~~~~~~~~~~l 254 (259)
T PF00290_consen 237 --------GDDAEKFLKELKEFVREL 254 (259)
T ss_dssp --------CCHHHHHHHHHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHHH
Confidence 123456667766666654
No 158
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.19 E-value=8.9e-05 Score=66.51 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEE--EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc-CCC--CC
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-IDD--IN 129 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~I--diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-~~~--~~ 129 (311)
.+...+...++.+.+.|+++| .+|.+-.. --...+.+.++.+..++ .++|+.+-.... ..- ..
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~-----------~~~~~~~i~~v~~~~~~-~g~~~iie~~~~g~~~~~~~ 140 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE-----------EREMLEELARVAAEAHK-YGLPLIAWMYPRGPAVKNEK 140 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch-----------HHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCcccCcc
Confidence 345556666677888999999 45544110 00112233444443333 478888755431 100 01
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC--CCHHH----HHH
Q psy2386 130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKE----IDL 203 (311)
Q Consensus 130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI--~s~~d----a~~ 203 (311)
+.+.+...++...+.|+|+|-+.. + .+.+.++++++.. .+||++.||+ .|++| +.+
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~-~----------------~~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~ 202 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKY-T----------------GDAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYD 202 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecC-C----------------CCHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHH
Confidence 112333447778899999997731 1 2678899999887 6999998987 67777 555
Q ss_pred HHhh-cCEEEEehhhhhCCcchH
Q psy2386 204 HLNY-IDGVMLGREAYKNPFLMS 225 (311)
Q Consensus 204 ~l~~-adgVmigRa~l~~P~i~~ 225 (311)
+++. ++||.+||.++..|....
T Consensus 203 ~~~~Ga~gv~vg~~i~~~~dp~~ 225 (235)
T cd00958 203 AMEAGAAGVAVGRNIFQRPDPVA 225 (235)
T ss_pred HHHcCCcEEEechhhhcCCCHHH
Confidence 5655 999999999998776433
No 159
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.18 E-value=7.9e-05 Score=66.46 Aligned_cols=150 Identities=18% Similarity=0.250 Sum_probs=102.2
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEecc
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIG 124 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g 124 (311)
+.++|...|+..+.+-.+.+++.|+|.+-+- =|+=+||. .+| -++++++|+. ++.|+.|=+=+
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~---tfg----------~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL---TFG----------APICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc---ccC----------HHHHHHHHHhCCCCCEEEEecc-
Confidence 4568889999999999999999998865443 34433321 122 3557778776 57887765443
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------------------------------cccc
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLKK 160 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------------------------------~~~G 160 (311)
++ ...+++.+.++|++.|++|.-.. ...|
T Consensus 68 -~~------p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PG 140 (220)
T PRK08883 68 -KP------VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPG 140 (220)
T ss_pred -CC------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCC
Confidence 22 35678888999999999984310 0013
Q ss_pred CCCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 161 LNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 161 ~~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
+.|.. .. +..++.++++++... ++||.+-|||+ .+.+.++.+. ||++.+|++++..+.
T Consensus 141 fgGq~--fi-~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 141 FGGQS--FI-PHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCCce--ec-HhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 33321 11 224566777776542 38999999999 8999999876 999999999876544
No 160
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.18 E-value=4.4e-05 Score=75.45 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=95.4
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI 125 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~ 125 (311)
..+-.+.|..++....+..++ +.|+|.|-|-...+ +++.+.++++.+++.. ++||.+ |.
T Consensus 214 l~Vgaav~~~~~~~~ra~~Lv-~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~----g~ 273 (475)
T TIGR01303 214 LRIGAAVGINGDVGGKAKALL-DAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVA----GN 273 (475)
T ss_pred ceehheeeeCccHHHHHHHHH-HhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEE----ec
Confidence 344555555555555555444 46899887764432 3577899999999865 789888 32
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA---FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
-. +.+-++.|.++|+|.|-|-+... ..+++.|- ......+.++....+++ . ++|||+.|||+++.|+.
T Consensus 274 ~~------t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~-g~~~~~a~~~~~~~~~~-~-~~~viadGgi~~~~di~ 344 (475)
T TIGR01303 274 VV------SAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGV-GRPQFSAVLECAAEARK-L-GGHVWADGGVRHPRDVA 344 (475)
T ss_pred cC------CHHHHHHHHHhCCCEEEECCcCCccccCccccCC-CCchHHHHHHHHHHHHH-c-CCcEEEeCCCCCHHHHH
Confidence 21 25678889999999998754321 12233221 01111234454444444 4 69999999999999999
Q ss_pred HHHhh-cCEEEEehhhhh
Q psy2386 203 LHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 203 ~~l~~-adgVmigRa~l~ 219 (311)
+.|.. ||+||+|+-+-+
T Consensus 345 kala~GA~~vm~g~~~ag 362 (475)
T TIGR01303 345 LALAAGASNVMVGSWFAG 362 (475)
T ss_pred HHHHcCCCEEeechhhcc
Confidence 99987 999999987743
No 161
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.17 E-value=9.2e-06 Score=73.41 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|++.++|-.-++...| .+.+++.|+++.+.+ +||...|||+|.+|++++++. ||-|
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g---------~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rv 99 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIEN---------SVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQ 99 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccC---------CcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEE
Confidence 3579999999999999998654431222 135899999999986 699999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHh
Q psy2386 212 MLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~ 229 (311)
.+|+.++.||.+++++.+
T Consensus 100 vigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 100 IVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred EECchhhCCHHHHHHHHH
Confidence 999999999999999843
No 162
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.15 E-value=0.00018 Score=64.46 Aligned_cols=143 Identities=16% Similarity=0.256 Sum_probs=94.9
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.+.++.+.|.-++|+++.+.+ .+.|+|+|-+|.| +.. +...+.++.+++. +.-+.+-+.
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~----------------d~~~~~~~~i~~~-g~~iGls~~ 123 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST----------------IHLHRLIQQIKSA-GMKAGVVLN 123 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc----------------hhHHHHHHHHHHC-CCeEEEEEC
Confidence 356778999999999987555 5679999999866 221 2334556666553 332333222
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcC-CCEEE---EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAG-CRTFI---VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G-~~~it---vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~ 198 (311)
+. . ..+.++.+.+.| +|+|. +++.+. +. ..++...+.++++++..+++||.+-||| +.
T Consensus 124 --~~--t----~~~~~~~~~~~~~~Dyi~~~~v~pg~~------~~---~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~ 185 (229)
T PLN02334 124 --PG--T----PVEAVEPVVEKGLVDMVLVMSVEPGFG------GQ---SFIPSMMDKVRALRKKYPELDIEVDGGV-GP 185 (229)
T ss_pred --CC--C----CHHHHHHHHhccCCCEEEEEEEecCCC------cc---ccCHHHHHHHHHHHHhCCCCcEEEeCCC-CH
Confidence 11 1 135556666664 99994 454321 11 1123356778888887557899999999 68
Q ss_pred HHHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386 199 KEIDLHLNY-IDGVMLGREAYKNPFLM 224 (311)
Q Consensus 199 ~da~~~l~~-adgVmigRa~l~~P~i~ 224 (311)
+.+.++.+. +|+|.+|++++..+...
T Consensus 186 e~i~~l~~aGad~vvvgsai~~~~d~~ 212 (229)
T PLN02334 186 STIDKAAEAGANVIVAGSAVFGAPDYA 212 (229)
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHH
Confidence 999999986 99999999998766543
No 163
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.14 E-value=1.6e-05 Score=72.02 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=79.1
Q ss_pred EEEEeccCCC-CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC
Q psy2386 118 TVKHRIGIDD-INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196 (311)
Q Consensus 118 svKiR~g~~~-~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~ 196 (311)
.|+.+-|... ...+.+..+.++.+.+.|+..+++--=.+.. | .+.+.+.|+++.+.+ .+||...|||+
T Consensus 16 vVrl~~G~~~~~~~y~~p~~~a~~~~~~g~~~lhivDLd~a~-g---------~~~n~~~i~~i~~~~-~~~v~vgGGIr 84 (243)
T TIGR01919 16 AVRLQQGAGGSKTYYGSLESAAKWWEQGGAEWIHLVDLDAAF-G---------GGNNEMMLEEVVKLL-VVVEELSGGRR 84 (243)
T ss_pred EEEeecCCCCCceecCCHHHHHHHHHhCCCeEEEEEECCCCC-C---------CcchHHHHHHHHHHC-CCCEEEcCCCC
Confidence 4555555311 1112245688899999999999886433211 1 125889999999998 69999999999
Q ss_pred CHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 197 TKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 197 s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
|.+|++++++. ||-|++|+.++.||.++.++.+.+
T Consensus 85 s~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~ 120 (243)
T TIGR01919 85 DDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYG 120 (243)
T ss_pred CHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHc
Confidence 99999999987 999999999999999999887653
No 164
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.13 E-value=1.1e-05 Score=71.91 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..+.++.+.+.|+..+++-.-+....| .+.+.+.|+++.+.+ ++||-..|||+|.+++.++++. ++-|
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rV 101 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARV 101 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence 4679999999999999998654432222 235789999999998 7999999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.+|+.++.||.++.++.+.+
T Consensus 102 iiGt~av~~p~~v~~~~~~~ 121 (241)
T COG0106 102 IIGTAAVKNPDLVKELCEEY 121 (241)
T ss_pred EEecceecCHHHHHHHHHHc
Confidence 99999999999999998764
No 165
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.13 E-value=1.4e-05 Score=72.25 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.+.++.+++.|++.|++-.- | .+ +++.|+++.+.+ ++||...|||++ ++++++++. ||.|.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEE
Confidence 78999999999999998633 1 13 889999999987 799999999998 999999987 999999
Q ss_pred ehhhhhC----CcchHHhHhhh
Q psy2386 214 GREAYKN----PFLMSNFDLNY 231 (311)
Q Consensus 214 gRa~l~~----P~i~~~~~~~~ 231 (311)
|+.++.| |.+++++.+.+
T Consensus 104 GS~av~~~~i~~~~~~~i~~~f 125 (253)
T TIGR02129 104 TSWLFTKGKFDLKRLKEIVSLV 125 (253)
T ss_pred CcHHHhCCCCCHHHHHHHHHHh
Confidence 9999998 67888887765
No 166
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.13 E-value=0.0001 Score=67.61 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=93.8
Q ss_pred CCCeEEEecCCCH-------HHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhcc---
Q psy2386 45 EHPIAFQVGDNEP-------KKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS--- 112 (311)
Q Consensus 45 ~~p~~~Ql~g~~~-------~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~--- 112 (311)
+.++++.+.+..+ +.+..-++.+.+.|+|.|++- .|-- . .+.+.+.++++++.
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~--------------~-~~~~~~~~~~v~~~~~~ 137 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSE--------------T-EAEMLEDLGEVAEECEE 137 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecCCh--------------h-HHHHHHHHHHHHHHHHH
Confidence 4667887763221 334444666778899999885 3310 0 12233334444333
Q ss_pred ccceeEEEEec-cC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386 113 VEIDITVKHRI-GI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189 (311)
Q Consensus 113 ~~~pvsvKiR~-g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv 189 (311)
.++|+.|=... |. ....+.+.....++...+.|+|+|... |. .+.+.++++.+.. .+||
T Consensus 138 ~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~--------~~---------~~~~~l~~~~~~~-~ipV 199 (267)
T PRK07226 138 WGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN--------YT---------GDPESFREVVEGC-PVPV 199 (267)
T ss_pred cCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC--------CC---------CCHHHHHHHHHhC-CCCE
Confidence 37887663211 11 111112244556788889999999443 11 2567888888776 6999
Q ss_pred EEecCCC--CHHHHHHHH----hh-cCEEEEehhhhhCCcchH
Q psy2386 190 IINGGIK--TKKEIDLHL----NY-IDGVMLGREAYKNPFLMS 225 (311)
Q Consensus 190 i~nGgI~--s~~da~~~l----~~-adgVmigRa~l~~P~i~~ 225 (311)
++.|||+ |.+++.+++ +. |+|+.+||+++..|....
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence 9999999 999999887 33 999999999998877443
No 167
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.12 E-value=0.00027 Score=63.37 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=47.6
Q ss_pred CcCcHHHHHHHHHhCCCC-eEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 170 PILKYNFVYNLKKDFPEL-EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~i-pvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
.+.+.+.++++++.+ ++ ||+..|||+|++++++++.. ||+|.+|+++..||.
T Consensus 168 ~~~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 168 DPVPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 456899999999987 77 99999999999999997766 999999999999998
No 168
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.12 E-value=0.00022 Score=62.98 Aligned_cols=150 Identities=16% Similarity=0.212 Sum_probs=96.6
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc----ccCccc------CcccCChHHHHHHHHH------
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV----QNGFFG------AILMTKPLLVSDCIKA------ 108 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v----~~~~~G------~~Ll~~~~~~~~iv~~------ 108 (311)
..++++=+-+.++++..+.++.+.+.|+..||+-+--|...- .+..++ +.=.-+++.+...+++
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 456777788999999999999999999999999754442210 011111 1112233333332221
Q ss_pred -----------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386 109 -----------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 109 -----------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i 177 (311)
.+. .+.++.. |. .+ ..| +....+.|+|+|.+.+-. ...++++
T Consensus 89 sp~~~~~v~~~~~~-~~~~~~~----G~---~t---~~E-~~~A~~~Gad~vk~Fpa~---------------~~G~~~l 141 (206)
T PRK09140 89 TPNTDPEVIRRAVA-LGMVVMP----GV---AT---PTE-AFAALRAGAQALKLFPAS---------------QLGPAGI 141 (206)
T ss_pred CCCCCHHHHHHHHH-CCCcEEc----cc---CC---HHH-HHHHHHcCCCEEEECCCC---------------CCCHHHH
Confidence 111 1222222 10 11 123 455667899998874311 2457889
Q ss_pred HHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 178 YNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 178 ~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
+.+++.+| ++|+++.||| +++++.++++. +|+|.++++++...+
T Consensus 142 ~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~ 187 (206)
T PRK09140 142 KALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQ 187 (206)
T ss_pred HHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccccc
Confidence 99999885 6999999999 78999999987 999999999976433
No 169
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.10 E-value=0.00011 Score=64.95 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=87.9
Q ss_pred CCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcH
Q psy2386 54 DNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY 131 (311)
Q Consensus 54 g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~ 131 (311)
|..+ +.=..-++.+.+.|+|.||+-+- +|...-.+.+.+.+-++++++.+ ++|+.|=+-.+.-.+
T Consensus 65 G~~~~~~K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~--- 131 (211)
T TIGR00126 65 GASTTDVKLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTD--- 131 (211)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCH---
Confidence 4443 33333345677789999998632 34444457788888888888776 456555444443222
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-ID 209 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-ad 209 (311)
++....++.+.++|+|+|-.. .||.+ +.+..+.++.+++.++ .+||-+.|||+|.+++.++++. |+
T Consensus 132 ~ei~~a~~ia~eaGADfvKTs------TGf~~------~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTS------TGFGA------GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeC------CCCCC------CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhH
Confidence 256788888999999999653 23321 1245555555555542 5999999999999999999975 66
Q ss_pred EEE
Q psy2386 210 GVM 212 (311)
Q Consensus 210 gVm 212 (311)
-+-
T Consensus 200 riG 202 (211)
T TIGR00126 200 RIG 202 (211)
T ss_pred HhC
Confidence 443
No 170
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.07 E-value=1.9e-05 Score=74.64 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
...+++.++.|+|.|+++|-. ..|..|. ....+.-..++.++++.+ + ||||+.|||.+.+++..++.. ||||+
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~e--AGGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAlalGA~gVq 211 (336)
T COG2070 137 VREALKAERAGADAVIAQGAE--AGGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALALGADGVQ 211 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCc--CCCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHHhccHHHH
Confidence 578899999999999998876 3555442 001122357899999998 7 999999999999999999987 99999
Q ss_pred EehhhhhCC
Q psy2386 213 LGREAYKNP 221 (311)
Q Consensus 213 igRa~l~~P 221 (311)
+|+.++.-.
T Consensus 212 ~GT~Fl~t~ 220 (336)
T COG2070 212 MGTRFLATK 220 (336)
T ss_pred hhhhhhccc
Confidence 999987644
No 171
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.04 E-value=2.6e-05 Score=70.05 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+.+.|++.+++-.=++. .| .+.+.+.|+++.+.. ..||..-|||+|.+|++++++. ||-|
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~---------~~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kv 99 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EG---------VGNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNAL 99 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CC---------CcchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEE
Confidence 3579999999999999998654431 12 124789999999854 3599999999999999999987 9999
Q ss_pred EEehhhhhCCcchHHhHhhh
Q psy2386 212 MLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~~~ 231 (311)
.+|+.++.||.+++++.+.+
T Consensus 100 vigt~a~~~p~~~~~~~~~~ 119 (232)
T PRK13586 100 VFSTIVFTNFNLFHDIVREI 119 (232)
T ss_pred EECchhhCCHHHHHHHHHHh
Confidence 99999999999999987654
No 172
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.04 E-value=0.00022 Score=63.03 Aligned_cols=160 Identities=15% Similarity=0.204 Sum_probs=93.5
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~ 127 (311)
+.++|...|+..+.+.++.+.+.|++.|.+-. +++ . ...+.....+.++.+++.++.|+.|-+-.. +
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~--------~d~--~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--d 72 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDV--------MDG--H-FVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--N 72 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeC--------ccC--C-cCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--C
Confidence 67889999999999999999999999999941 111 1 111212234556666655443433333321 1
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEecCcc--------cc--ccC---------------------------CCC-cCCCC
Q psy2386 128 INSYDFVRDFVGTVSSAGCRTFIVHARNA--------FL--KKL---------------------------NPK-QNRKI 169 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~--~G~---------------------------~g~-~~~~~ 169 (311)
..+++..+.++|++.+++|+... .. .|. .+. .....
T Consensus 73 ------~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg 146 (220)
T PRK05581 73 ------PDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGG 146 (220)
T ss_pred ------HHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 13445556688888888875420 00 000 000 00011
Q ss_pred CcCcHH---HHHHHHHhCC--C--CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 170 PILKYN---FVYNLKKDFP--E--LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 170 ~~~~~~---~i~~i~~~~~--~--ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
...+|. .+.++++..+ + .+|..-|||+. +++.++++. +|+|.+|++++..+.....+
T Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~~~~~ 211 (220)
T PRK05581 147 QKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDYKEAI 211 (220)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCHHHHH
Confidence 122343 3444444321 1 33557799998 899999866 99999999998877654433
No 173
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.03 E-value=2.4e-05 Score=71.12 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++|+.+++.|++.++|-.-.+ | .+.+++.++++++ + ++||-..|||++ ++++++++. ||-|
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdg---g---------~~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rV 108 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGA---D---------DASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHV 108 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC---C---------CcccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEE
Confidence 468999999999999999864332 1 1247899999999 7 699999999997 999999987 9999
Q ss_pred EEehhhhhC----CcchHHhHhhh
Q psy2386 212 MLGREAYKN----PFLMSNFDLNY 231 (311)
Q Consensus 212 migRa~l~~----P~i~~~~~~~~ 231 (311)
+||+.++.| |.+++++.+.+
T Consensus 109 iigT~Av~~~~~~p~~v~~~~~~~ 132 (262)
T PLN02446 109 IVTSYVFRDGQIDLERLKDLVRLV 132 (262)
T ss_pred EEchHHHhCCCCCHHHHHHHHHHh
Confidence 999999999 99999988765
No 174
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.03 E-value=0.00016 Score=65.69 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHHHH
Q psy2386 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~ 134 (311)
.+.-..-++.+.+.|+|.||+=+- +|..+-.+.+.+.+-++++++.++ .|+-|=+-.+.-.++ +..
T Consensus 82 t~~K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e--e~i 149 (257)
T PRK05283 82 IDIALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE--ALI 149 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH--HHH
Confidence 333333344566779999998421 445555688999999999988764 444444444433322 125
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC------CCCeEEEecCCCCHHHHHHHHhhc
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNYI 208 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~a 208 (311)
...++.+.++|+|+|-= ..|+.+. .+..+.++-+++.. .++-|=+.|||+|.+++.++++.
T Consensus 150 ~~a~~~a~~aGADFVKT------STGf~~~------gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a- 216 (257)
T PRK05283 150 RKASEIAIKAGADFIKT------STGKVPV------NATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL- 216 (257)
T ss_pred HHHHHHHHHhCCCEEEc------CCCCCCC------CCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH-
Confidence 67788889999999943 3344321 24555555555443 25789999999999999999864
Q ss_pred CEEEEehhhhhCCcch
Q psy2386 209 DGVMLGREAYKNPFLM 224 (311)
Q Consensus 209 dgVmigRa~l~~P~i~ 224 (311)
|+-.+++-|+-
T Consensus 217 -----g~~~lg~~~~~ 227 (257)
T PRK05283 217 -----ADEILGADWAD 227 (257)
T ss_pred -----HHHHhChhhcC
Confidence 33445555553
No 175
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.03 E-value=0.00019 Score=67.24 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=97.3
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
.-+.+.+ |-.++++.++.++++. .++|.|-|-... -+-+.+.+.++.+|+...-+..+|=.+.
T Consensus 96 ~~~~vsv-G~~~~d~er~~~L~~a~~~~d~iviD~Ah---------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~ 159 (343)
T TIGR01305 96 QNVAVSS-GSSDNDLEKMTSILEAVPQLKFICLDVAN---------------GYSEHFVEFVKLVREAFPEHTIMAGNVV 159 (343)
T ss_pred ceEEEEe-ccCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHhhCCCCeEEEeccc
Confidence 3455655 7788889998887775 368887775322 1346788899999998754555553331
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCC
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIK 196 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~ 196 (311)
+.+-++.|.++|+|.|.|. ..|+...|. +-+-+..+.++++.. .++|||+-|||+
T Consensus 160 ---------T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gv--------g~pqltAv~~~a~aa~~~~v~VIaDGGIr 222 (343)
T TIGR01305 160 ---------TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGV--------GYPQLSAVIECADAAHGLKGHIISDGGCT 222 (343)
T ss_pred ---------CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCC--------CcCHHHHHHHHHHHhccCCCeEEEcCCcC
Confidence 2466888999999999864 122222331 112456666666543 268999999999
Q ss_pred CHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 197 TKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 197 s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+.-|+.+.+.. ||+||+|.-+.+
T Consensus 223 ~~gDI~KALA~GAd~VMlG~llAG 246 (343)
T TIGR01305 223 CPGDVAKAFGAGADFVMLGGMFAG 246 (343)
T ss_pred chhHHHHHHHcCCCEEEECHhhhC
Confidence 99999999987 999999954433
No 176
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.03 E-value=0.00023 Score=62.65 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHH
Q psy2386 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
.+....-++.+.+.|+|.||+.+- +|..+-.+.+.+.+-+.++++.+ +.|+.|=+-.+... .+...
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~---~~~i~ 134 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLT---DEEII 134 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC---HHHHH
Confidence 344555577788889999999632 23333345666677777777766 45554423333222 23567
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-ID 209 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-ad 209 (311)
..++.+.++|+|+|... .||.+ +++..+.++.+++.+ ..+||.++|||+|.+++.++++. |+
T Consensus 135 ~a~ria~e~GaD~IKTs------TG~~~------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ 198 (203)
T cd00959 135 KACEIAIEAGADFIKTS------TGFGP------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred HHHHHHHHhCCCEEEcC------CCCCC------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChh
Confidence 78888999999999664 22221 124555555555443 25999999999999999999965 55
No 177
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.01 E-value=0.00013 Score=72.70 Aligned_cols=135 Identities=17% Similarity=0.167 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHH
Q psy2386 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD 136 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e 136 (311)
+++..+-++.+.++|+|.|+|- +.. ...+.+.+.++.+++..+.++.|+. |--- ..+
T Consensus 240 ~~~~~~ra~~Lv~aGvd~i~vd--~a~-------------g~~~~~~~~i~~ir~~~~~~~~V~a--GnV~------t~e 296 (502)
T PRK07107 240 TRDYAERVPALVEAGADVLCID--SSE-------------GYSEWQKRTLDWIREKYGDSVKVGA--GNVV------DRE 296 (502)
T ss_pred hhhHHHHHHHHHHhCCCeEeec--Ccc-------------cccHHHHHHHHHHHHhCCCCceEEe--cccc------CHH
Confidence 3344444445666899999986 111 1234557888888887654455543 2111 246
Q ss_pred HHHHHHHcCCCEEEE--ecCc-cccccCCCCcCCCCCcCcHHHHHHHHHhC-------C-CCeEEEecCCCCHHHHHHHH
Q psy2386 137 FVGTVSSAGCRTFIV--HARN-AFLKKLNPKQNRKIPILKYNFVYNLKKDF-------P-ELEIIINGGIKTKKEIDLHL 205 (311)
Q Consensus 137 ~~~~l~~~G~~~itv--h~Rt-~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-------~-~ipvi~nGgI~s~~da~~~l 205 (311)
-++.+.++|+|+|.| |+.. +..+ .+...+.+-+..+.+++++. . ++|||+-|||++.-|+.+.|
T Consensus 297 ~a~~li~aGAd~I~vg~g~Gs~c~tr-----~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl 371 (502)
T PRK07107 297 GFRYLAEAGADFVKVGIGGGSICITR-----EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL 371 (502)
T ss_pred HHHHHHHcCCCEEEECCCCCcCcccc-----cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH
Confidence 678888999999987 3321 0000 01112223455566555532 1 38999999999999999999
Q ss_pred hh-cCEEEEehhhhh
Q psy2386 206 NY-IDGVMLGREAYK 219 (311)
Q Consensus 206 ~~-adgVmigRa~l~ 219 (311)
.. ||+||+||.+-+
T Consensus 372 a~GA~~vm~G~~~ag 386 (502)
T PRK07107 372 AMGADFIMLGRYFAR 386 (502)
T ss_pred HcCCCeeeeChhhhc
Confidence 87 999999999865
No 178
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.99 E-value=0.0006 Score=59.44 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=95.7
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE-Eec
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK-HRI 123 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK-iR~ 123 (311)
+.|+++.+.-.++... -++.+.++|+|+|-++.-. .++.+.++++.+++. ++++.+- +..
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~~-g~~~~v~~~~~ 113 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKKY-GKEVQVDLIGV 113 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence 6788888776777532 2355678999999998321 234567778887764 6665543 222
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
.. ..+..+ +.+.|+|++.++ +++....| .+...+.++++++.. ++||.+.|||+ ++++.
T Consensus 114 --~t------~~e~~~-~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~~-~~~i~~~GGI~-~~~i~ 173 (202)
T cd04726 114 --ED------PEKRAK-LLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKLL-GVKVAVAGGIT-PDTLP 173 (202)
T ss_pred --CC------HHHHHH-HHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhhc-CCCEEEECCcC-HHHHH
Confidence 11 234444 777899999885 33321111 123567788888764 79999999995 99999
Q ss_pred HHHhh-cCEEEEehhhhhCCcc
Q psy2386 203 LHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 203 ~~l~~-adgVmigRa~l~~P~i 223 (311)
++++. +|+|.+|++++..+..
T Consensus 174 ~~~~~Gad~vvvGsai~~~~d~ 195 (202)
T cd04726 174 EFKKAGADIVIVGRAITGAADP 195 (202)
T ss_pred HHHhcCCCEEEEeehhcCCCCH
Confidence 99987 9999999999866553
No 179
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.98 E-value=2.9e-05 Score=77.74 Aligned_cols=92 Identities=11% Similarity=0.128 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-----------HHH
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-----------KEI 201 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-----------~da 201 (311)
+.+++++.+.+.|+|.|++-.-++...+ .+ ....+++.|+++++.+ .+||...|||+|. +++
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~---~~---~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDF---PL---GDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVA 340 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCC---cc---cchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHH
Confidence 4689999999999999998765541111 10 1123589999999998 8999999999998 668
Q ss_pred HHHHhh-cCEEEEehhhhhCC------------cchHHhHhhh
Q psy2386 202 DLHLNY-IDGVMLGREAYKNP------------FLMSNFDLNY 231 (311)
Q Consensus 202 ~~~l~~-adgVmigRa~l~~P------------~i~~~~~~~~ 231 (311)
++++.. ||-|.||++++.|| .+++++.+.+
T Consensus 341 ~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~f 383 (538)
T PLN02617 341 SEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVY 383 (538)
T ss_pred HHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHc
Confidence 999987 99999999999975 8898888765
No 180
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.97 E-value=4.1e-05 Score=68.88 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..++++.+.+.|++.+++-.-++. .| .+.+.+.++++.+.+ .+||...|||+|.+|+++++.. |+-|.
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~-~~---------~~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI-MG---------RGDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVI 105 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc-cC---------CCccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence 579999999999999998765542 12 135889999999987 7999999999999999999987 99999
Q ss_pred EehhhhhCCcchHHhHhhh
Q psy2386 213 LGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 213 igRa~l~~P~i~~~~~~~~ 231 (311)
+|+.++.| .++.++.+.+
T Consensus 106 igt~~~~~-~~~~~~~~~~ 123 (233)
T cd04723 106 VGTETLPS-DDDEDRLAAL 123 (233)
T ss_pred Ecceeccc-hHHHHHHHhc
Confidence 99999999 9998887765
No 181
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.92 E-value=0.00024 Score=66.51 Aligned_cols=140 Identities=13% Similarity=0.132 Sum_probs=96.7
Q ss_pred CeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG 124 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g 124 (311)
-+.+.+ |-.++++.++.++++. .|+|.|-|-... -+-+.+.++++.+|+.. +.+|.+ |
T Consensus 98 ~~~vav-G~~~~d~er~~~L~~~~~g~D~iviD~Ah---------------Ghs~~~i~~ik~ik~~~P~~~vIa----G 157 (346)
T PRK05096 98 HVMVST-GTSDADFEKTKQILALSPALNFICIDVAN---------------GYSEHFVQFVAKAREAWPDKTICA----G 157 (346)
T ss_pred eEEEEe-cCCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHHhCCCCcEEE----e
Confidence 355555 7788999999988874 789988776322 13477889999999876 556554 2
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHH---HHhCCCCeEEEecCC
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNL---KKDFPELEIIINGGI 195 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i---~~~~~~ipvi~nGgI 195 (311)
-- .+.+.++.|.++|+|.|.|- +.|+.-.|.. . +-+..|.++ +... ++|||+-|||
T Consensus 158 NV------~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG-~-------PQltAV~~~a~~a~~~-gvpiIADGGi 222 (346)
T PRK05096 158 NV------VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVG-Y-------PQLSAVIECADAAHGL-GGQIVSDGGC 222 (346)
T ss_pred cc------cCHHHHHHHHHcCCCEEEEcccCCccccCccccccC-h-------hHHHHHHHHHHHHHHc-CCCEEecCCc
Confidence 11 13577889999999999763 1222122211 1 233444443 3444 7999999999
Q ss_pred CCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386 196 KTKKEIDLHLNY-IDGVMLGREAYKNP 221 (311)
Q Consensus 196 ~s~~da~~~l~~-adgVmigRa~l~~P 221 (311)
++.-|+.+.|.. ||.||+|+-+-+..
T Consensus 223 ~~sGDI~KAlaaGAd~VMlGsllAGt~ 249 (346)
T PRK05096 223 TVPGDVAKAFGGGADFVMLGGMLAGHE 249 (346)
T ss_pred ccccHHHHHHHcCCCEEEeChhhcCcc
Confidence 999999999986 99999998875543
No 182
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.89 E-value=0.00045 Score=61.30 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=98.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----cccC-------cccCcccCChHHHHHHHHH----
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----VQNG-------FFGAILMTKPLLVSDCIKA---- 108 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v~~~-------~~G~~Ll~~~~~~~~iv~~---- 108 (311)
..+++.=|.+.++++....++.+.+.|+..|||-+-.|..- .++. -.|+.=..+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 45777778899999999999999999999999987766321 1110 1233333455554433332
Q ss_pred -------------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH
Q psy2386 109 -------------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175 (311)
Q Consensus 109 -------------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~ 175 (311)
.++ .++|+.- |.. + ..| +....++|+|+|.+.+... ...+
T Consensus 92 ivsP~~~~~v~~~~~~-~~i~~iP----G~~---T---~~E-~~~A~~~Gad~vklFPa~~---------------~G~~ 144 (213)
T PRK06552 92 IVSPSFNRETAKICNL-YQIPYLP----GCM---T---VTE-IVTALEAGSEIVKLFPGST---------------LGPS 144 (213)
T ss_pred EECCCCCHHHHHHHHH-cCCCEEC----CcC---C---HHH-HHHHHHcCCCEEEECCccc---------------CCHH
Confidence 211 1222211 111 1 123 3344579999998865321 2357
Q ss_pred HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 176 ~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+++.++..+|++|+++.|||+ .+.+.++++. +++|.+|+.++.
T Consensus 145 ~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred HHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 799999988889999999998 6999999987 999999999853
No 183
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.89 E-value=0.00057 Score=60.72 Aligned_cols=153 Identities=13% Similarity=0.194 Sum_probs=94.6
Q ss_pred hccccCC-CCCCeEEEecC-CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386 37 HCLDFNA-EEHPIAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 113 (311)
Q Consensus 37 ~~l~~~~-~~~p~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~ 113 (311)
.++++-+ ..-.+..+-.| .+.++-...|+++.+. |-++|-|- |..+ .-.|+-||-...+-.+.+.+.
T Consensus 53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLE-------Vi~D--~~~L~PD~~etl~Aae~Lv~e- 122 (247)
T PF05690_consen 53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLE-------VIGD--DKTLLPDPIETLKAAEILVKE- 122 (247)
T ss_dssp HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE---------BS---TTT--B-HHHHHHHHHHHHHT-
T ss_pred cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEE-------EeCC--CCCcCCChhHHHHHHHHHHHC-
Confidence 4555433 45556777766 4789999999999886 45777664 1222 224666766555555555443
Q ss_pred cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
+.-|.-=+. ++ .-++++|++.|+..|-.-|-.- | | -.+..+...++.+.+.. ++|||.-+
T Consensus 123 GF~VlPY~~-----~D-----~v~akrL~d~GcaavMPlgsPI---G-S-----g~Gi~n~~~l~~i~~~~-~vPvIvDA 182 (247)
T PF05690_consen 123 GFVVLPYCT-----DD-----PVLAKRLEDAGCAAVMPLGSPI---G-S-----GRGIQNPYNLRIIIERA-DVPVIVDA 182 (247)
T ss_dssp T-EEEEEE------S------HHHHHHHHHTT-SEBEEBSSST---T-T--------SSTHHHHHHHHHHG-SSSBEEES
T ss_pred CCEEeecCC-----CC-----HHHHHHHHHCCCCEEEeccccc---c-c-----CcCCCCHHHHHHHHHhc-CCcEEEeC
Confidence 444444332 12 3589999999999997654321 0 0 11335778899999888 89999999
Q ss_pred CCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 194 GIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 194 gI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
||.+++|+.+.++. ||+|++.++...
T Consensus 183 GiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 183 GIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp ---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 99999999999997 999999998743
No 184
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.88 E-value=7.5e-05 Score=65.31 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=104.7
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe-ccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEE
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL-NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKH 121 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi-N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKi 121 (311)
..-|+-| .+-+|+.|..|. ++|+|.||| |+-|=+.. ...-..+.+.++.+..|+-+ ++|++|-+
T Consensus 60 s~lPICV--SaVep~~f~~aV----~AGAdliEIGNfDsFY~q--------Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTV 125 (242)
T PF04481_consen 60 SNLPICV--SAVEPELFVAAV----KAGADLIEIGNFDSFYAQ--------GRRFSAEEVLALTRETRSLLPDITLSVTV 125 (242)
T ss_pred CCCCeEe--ecCCHHHHHHHH----HhCCCEEEecchHHHHhc--------CCeecHHHHHHHHHHHHHhCCCCceEEec
Confidence 3567666 478999998776 689999999 44443332 11235677888888888876 67888876
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc---cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~---~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~ 198 (311)
..-..-+ +=++++..|++.|+|.|.-.|.+.. ..|..|--+... .-+...+.+.+.+ ++||+..-|+.+.
T Consensus 126 PHiL~ld----~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaa--pTLAaay~ISr~v-~iPVlcASGlS~v 198 (242)
T PF04481_consen 126 PHILPLD----QQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAA--PTLAAAYAISRAV-SIPVLCASGLSAV 198 (242)
T ss_pred CccccHH----HHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHh--HHHHHHHHHHhcc-CCceEeccCcchh
Confidence 6433322 3478999999999999987776641 112111100001 1345567788887 8999999999887
Q ss_pred HHHHHHHhhcCEEEEehhh
Q psy2386 199 KEIDLHLNYIDGVMLGREA 217 (311)
Q Consensus 199 ~da~~~l~~adgVmigRa~ 217 (311)
.-=..+..+|.||-||++.
T Consensus 199 T~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 199 TAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred hHHHHHHcCCcccchhHHh
Confidence 6666666669999999886
No 185
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.88 E-value=0.00061 Score=61.10 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=100.9
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI 123 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~ 123 (311)
-+.++|...|+..+.+-.+.+++.|+|.+-+- =|.=+|+. .+| -++++++++.. ++|+.+|+-+
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~---~~G----------~~~v~~lr~~~~~~~lDvHLm~ 74 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL---SFG----------PPVVKSLRKHLPNTFLDCHLMV 74 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc---CcC----------HHHHHHHHhcCCCCCEEEEECC
Confidence 36788999999999999999999998865443 23222221 122 35577777776 8899999873
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc-----------cccC------CCC---cC-----------------
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF-----------LKKL------NPK---QN----------------- 166 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-----------~~G~------~g~---~~----------------- 166 (311)
++ ...+++.+.++|+|.+|+|.-... ..|. .+. +.
T Consensus 75 --~~------p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~ 146 (228)
T PTZ00170 75 --SN------PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMT 146 (228)
T ss_pred --CC------HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhh
Confidence 11 346778889999999999954210 0010 000 00
Q ss_pred -------CCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 167 -------RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 167 -------~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
..-.+..++.++++++..+...+..-|||+- +.+..+.+. +|.+++||+++..+.
T Consensus 147 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 147 VEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred cccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCCCC
Confidence 0000011355667777655577888999985 677777765 999999999876554
No 186
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.86 E-value=0.001 Score=59.76 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHHcC-------CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386 54 DNEPKKLAKSAKIIQKWG-------YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID 126 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g-------~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~ 126 (311)
..+.++-.+.|+++.+.+ -++|-|- |..+ --.|+-|+-...+-.+.+.+. +.-|..- .
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLE-------Vi~D--~~~LlPD~~etl~Aae~Lv~e-GF~VlPY-----~ 144 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLE-------VISD--PKYLLPDPIGTLKAAEFLVKK-GFTVLPY-----I 144 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEE-------EeCC--CcccCCChHHHHHHHHHHHHC-CCEEeec-----C
Confidence 356788888898888864 4666554 1111 134777776655555555443 4444332 2
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386 127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN 206 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~ 206 (311)
.++ .-++++|++.|+..|-.-|-.- | | -.+..+...++.+.+.. ++||+.-+||.+++|+.+.++
T Consensus 145 ~~D-----~v~a~rLed~Gc~aVMPlgsPI---G-S-----g~Gl~n~~~l~~i~e~~-~vpVivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 145 NAD-----PMLAKHLEDIGCATVMPLGSPI---G-S-----GQGLQNLLNLQIIIENA-KIPVIIDAGIGTPSEASQAME 209 (267)
T ss_pred CCC-----HHHHHHHHHcCCeEEeeccCcc---c-C-----CCCCCCHHHHHHHHHcC-CCcEEEeCCcCCHHHHHHHHH
Confidence 222 3589999999999997643321 0 0 11234777888888885 799999999999999999999
Q ss_pred h-cCEEEEehhhh
Q psy2386 207 Y-IDGVMLGREAY 218 (311)
Q Consensus 207 ~-adgVmigRa~l 218 (311)
. ||||++.+|..
T Consensus 210 lGaDgVL~nSaIa 222 (267)
T CHL00162 210 LGASGVLLNTAVA 222 (267)
T ss_pred cCCCEEeecceee
Confidence 7 99999999985
No 187
>KOG0538|consensus
Probab=97.85 E-value=0.00029 Score=64.62 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcHH
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYN 175 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~~ 175 (311)
||.+-=+=++.+++.++.|+.||==+. .|=+..+.++|++.|+|+ |..+ + . -.|+..+
T Consensus 207 d~Sl~W~Di~wLr~~T~LPIvvKGilt----------~eDA~~Ave~G~~GIIVSNHGgRQ-l-D--------~vpAtI~ 266 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSITKLPIVVKGVLT----------GEDARKAVEAGVAGIIVSNHGGRQ-L-D--------YVPATIE 266 (363)
T ss_pred CCCCChhhhHHHHhcCcCCeEEEeecc----------cHHHHHHHHhCCceEEEeCCCccc-c-C--------cccchHH
Confidence 344444556778888899999993321 122566789999999995 3321 1 1 1246778
Q ss_pred HHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHH
Q psy2386 176 FVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILY 253 (311)
Q Consensus 176 ~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
.+.++.+++. +|||+.-|||++..|+.+.|+. |.+|.+||+.+..-.. .| ..-.+++++.+.+-
T Consensus 267 ~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~--------~G------e~GV~~vl~iL~~e 332 (363)
T KOG0538|consen 267 ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAA--------KG------EAGVKKVLDILRDE 332 (363)
T ss_pred HHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeecc--------cc------chhHHHHHHHHHHH
Confidence 8888888763 4999999999999999999987 9999999987553221 12 23356788888877
Q ss_pred HHHHHh-cCC
Q psy2386 254 IRQQLN-NNK 262 (311)
Q Consensus 254 ~~~~~~-~g~ 262 (311)
++..+. .|.
T Consensus 333 fe~tmaLsGc 342 (363)
T KOG0538|consen 333 FELTMALSGC 342 (363)
T ss_pred HHHHHHHhCC
Confidence 776666 664
No 188
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.84 E-value=0.0014 Score=57.58 Aligned_cols=178 Identities=10% Similarity=0.140 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHhCCCcEEEeccee----ccccc-CCchhccccCCC-CCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMFT----TQAIL-GNKKHCLDFNAE-EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI 75 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv~----a~~l~-~~~~~~l~~~~~-~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~I 75 (311)
|+|+..-=..|.+.|+. |-.++. .+.+- ....++.+..+. -.++.+ +...+++.+. +++.+.|+|+|
T Consensus 5 Gi~~~ed~~~a~~~Gvd---~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v-~vn~~~~~i~---~ia~~~~~d~V 77 (203)
T cd00405 5 GITTLEDALAAAEAGAD---AIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGV-FVNEDLEEIL---EIAEELGLDVV 77 (203)
T ss_pred CCCCHHHHHHHHHcCCC---EEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEE-EeCCCHHHHH---HHHHhcCCCEE
Confidence 66777766777778742 333332 22220 111122222322 123333 2244555554 44557899999
Q ss_pred EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386 76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN 155 (311)
Q Consensus 76 diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt 155 (311)
.||-. .+++. ++.+++..+.++...+... ... ..+. ......|+|++.+...+
T Consensus 78 qlhg~----------------e~~~~----~~~l~~~~~~~~i~~i~~~--~~~----~~~~-~~~~~~~aD~il~dt~~ 130 (203)
T cd00405 78 QLHGD----------------ESPEY----CAQLRARLGLPVIKAIRVK--DEE----DLEK-AAAYAGEVDAILLDSKS 130 (203)
T ss_pred EECCC----------------CCHHH----HHHHHhhcCCcEEEEEecC--Chh----hHHH-hhhccccCCEEEEcCCC
Confidence 99811 12333 4455555566665434442 211 1122 23345789999887655
Q ss_pred cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcc
Q psy2386 156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFL 223 (311)
Q Consensus 156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i 223 (311)
....|-+| .+.+|+.+++++ . ++|+++.||| |++.+.++++. ++||-+.+++...|-.
T Consensus 131 ~~~~Gg~g------~~~~~~~l~~~~--~-~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 131 GGGGGGTG------KTFDWSLLRGLA--S-RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCCCCCc------ceEChHHhhccc--c-CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 32112122 247999998887 4 6999999999 99999999975 8999999999877654
No 189
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.84 E-value=0.00097 Score=57.97 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=94.8
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----------cccCcccCcccCChHHHHHHHHH-----
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----------VQNGFFGAILMTKPLLVSDCIKA----- 108 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----------v~~~~~G~~Ll~~~~~~~~iv~~----- 108 (311)
..+++.=|.+.++++..+.++.+.+.|++.|++-+--|... .+..+.|.-+ .+ +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl-~~-d~~~~A~~~gAdgv 88 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTIL-TL-EDLEEAIAAGAQFC 88 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEE-cH-HHHHHHHHcCCCEE
Confidence 45777778899999999999999999999999965433111 1112222222 21 333332221
Q ss_pred -----------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386 109 -----------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 109 -----------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i 177 (311)
+++..+++ .-+| . .+ ..| +....+.|+|+|-+++-.. ..-.+++
T Consensus 89 ~~p~~~~~~~~~~~~~~~~----~i~G-~--~t---~~e-~~~A~~~Gadyv~~Fpt~~--------------~~G~~~l 143 (187)
T PRK07455 89 FTPHVDPELIEAAVAQDIP----IIPG-A--LT---PTE-IVTAWQAGASCVKVFPVQA--------------VGGADYI 143 (187)
T ss_pred ECCCCCHHHHHHHHHcCCC----EEcC-c--CC---HHH-HHHHHHCCCCEEEECcCCc--------------ccCHHHH
Confidence 01111222 1134 1 11 223 4556678999998854211 1246889
Q ss_pred HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
++++..+|++|+++.||| |++++.++++. +++|.++++++.
T Consensus 144 ~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 144 KSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 999998877999999999 67999999987 999999998864
No 190
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.83 E-value=0.0013 Score=58.78 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=91.7
Q ss_pred CCCeEEEecCCCH---HHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386 45 EHPIAFQVGDNEP---KKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120 (311)
Q Consensus 45 ~~p~~~Ql~g~~~---~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK 120 (311)
+-|++.|=.-... ..=...++.+.++|+|+|=+.-. .. ..++.+.+.++..++. ++.+.+
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~--------------~~~~e~~~~v~~a~~~-Gl~~I~- 119 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERR--------------LTLADIEAVVERAKKL-GLESVV- 119 (223)
T ss_pred CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccc--------------cCHHHHHHHHHHHHHC-CCeEEE-
Confidence 4678877543221 11113367778899999988632 00 1123466777776663 654434
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
-.+ + .+-++.+.+.|.+.|-+-+|-. .|..-......+...-+.++.+++..+++||++-|||.++++
T Consensus 120 -~v~----~-----~~~~~~~~~~~~~~I~~~p~~~--igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~ 187 (223)
T PRK04302 120 -CVN----N-----PETSAAAAALGPDYVAVEPPEL--IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED 187 (223)
T ss_pred -EcC----C-----HHHHHHHhcCCCCEEEEeCccc--cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH
Confidence 221 1 1234456778899998876632 121000000111111234455665444699999999999999
Q ss_pred HHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 201 IDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 201 a~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
+..+++. +|||.||++++.-+.....+
T Consensus 188 ~~~~~~~gadGvlVGsa~l~~~~~~~~~ 215 (223)
T PRK04302 188 VKAALELGADGVLLASGVVKAKDPEAAL 215 (223)
T ss_pred HHHHHcCCCCEEEEehHHhCCcCHHHHH
Confidence 9999966 99999999999776644433
No 191
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.82 E-value=0.0018 Score=62.41 Aligned_cols=140 Identities=12% Similarity=0.169 Sum_probs=100.5
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE-Ee
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK-HR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK-iR 122 (311)
.+.++.+-|.-.|+..+. ++.+.++|+|.+-+|...+ .+.+.+.++++++. ++-+.+- +.
T Consensus 225 ~~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD~ln 285 (391)
T PRK13307 225 PDAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILDMLN 285 (391)
T ss_pred CCCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 357899999999999886 6667799999999994322 23466777777774 5444442 22
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec-CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA-RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~-Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
. .+ ..+.++.+ ..++|.+.+|. ... ++ . ..-|+.++++++...+++|...|||. .+++
T Consensus 286 p----~t----p~e~i~~l-~~~vD~Vllht~vdp--~~--------~-~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti 344 (391)
T PRK13307 286 V----ED----PVKLLESL-KVKPDVVELHRGIDE--EG--------T-EHAWGNIKEIKKAGGKILVAVAGGVR-VENV 344 (391)
T ss_pred C----CC----HHHHHHHh-hCCCCEEEEccccCC--Cc--------c-cchHHHHHHHHHhCCCCcEEEECCcC-HHHH
Confidence 1 11 24566666 67899999995 332 11 1 12577888888754478999999999 8899
Q ss_pred HHHHhh-cCEEEEehhhhhCCcc
Q psy2386 202 DLHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 202 ~~~l~~-adgVmigRa~l~~P~i 223 (311)
.++++. +|.+.+||+++..+..
T Consensus 345 ~~l~~aGADivVVGsaIf~a~Dp 367 (391)
T PRK13307 345 EEALKAGADILVVGRAITKSKDV 367 (391)
T ss_pred HHHHHcCCCEEEEeHHHhCCCCH
Confidence 988876 9999999998765553
No 192
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.80 E-value=0.0006 Score=60.41 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=46.2
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~ 228 (311)
.|..-+.++++++. .|+|..|||+|+++++++.+. ||.|.+|..+..+|.-+.++.
T Consensus 178 ~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v 234 (240)
T COG1646 178 DPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETV 234 (240)
T ss_pred CCcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHH
Confidence 35566777777654 499999999999999999985 999999999999996555544
No 193
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.80 E-value=0.00079 Score=61.24 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
||-++.+|. .+|+|+|=|..+. -.++.+.++++...+ .+.-+-|-++. ..
T Consensus 120 d~~QI~eA~----~~GADaVLLI~~~---------------L~~~~l~~l~~~a~~-lGle~lVEVh~----------~~ 169 (254)
T PF00218_consen 120 DPYQIYEAR----AAGADAVLLIAAI---------------LSDDQLEELLELAHS-LGLEALVEVHN----------EE 169 (254)
T ss_dssp SHHHHHHHH----HTT-SEEEEEGGG---------------SGHHHHHHHHHHHHH-TT-EEEEEESS----------HH
T ss_pred CHHHHHHHH----HcCCCEeehhHHh---------------CCHHHHHHHHHHHHH-cCCCeEEEECC----------HH
Confidence 445444433 5799999887332 245667788777665 57777776653 12
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
| ++.+.++|++.|-|..|.- ..+ ..|++...++...+| ++.+|+-+||.|++|+..+... +|||.|
T Consensus 170 E-l~~al~~~a~iiGINnRdL--~tf---------~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLV 237 (254)
T PF00218_consen 170 E-LERALEAGADIIGINNRDL--KTF---------EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLV 237 (254)
T ss_dssp H-HHHHHHTT-SEEEEESBCT--TTC---------CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEE
T ss_pred H-HHHHHHcCCCEEEEeCccc--cCc---------ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEE
Confidence 3 4455689999999999873 222 257787888887765 5789999999999999999987 999999
Q ss_pred ehhhhhCCcchHHhH
Q psy2386 214 GREAYKNPFLMSNFD 228 (311)
Q Consensus 214 gRa~l~~P~i~~~~~ 228 (311)
|++++..|..-..+.
T Consensus 238 Ge~lm~~~d~~~~~~ 252 (254)
T PF00218_consen 238 GEALMRSPDPGEALR 252 (254)
T ss_dssp SHHHHTSSSHHHHHH
T ss_pred CHHHhCCCCHHHHHh
Confidence 999999998766554
No 194
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.79 E-value=0.0025 Score=57.67 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=98.0
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
.|+...=|=-||.++.+|. .+|+|+|=|.+. + .+++.+.++++...+ ++.-+.|-++.
T Consensus 103 ~PvL~KDFIid~~QI~ea~----~~GADavLLI~~--------------~-L~~~~l~~l~~~a~~-lGle~LVEVh~-- 160 (247)
T PRK13957 103 IPVLRKDFILDEIQIREAR----AFGASAILLIVR--------------I-LTPSQIKSFLKHASS-LGMDVLVEVHT-- 160 (247)
T ss_pred CCEEeccccCCHHHHHHHH----HcCCCEEEeEHh--------------h-CCHHHHHHHHHHHHH-cCCceEEEECC--
Confidence 4555544445555555444 367888866521 1 245566777766555 57766676553
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHH
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~ 204 (311)
.+=+++..++|++.|-|..|.- ..+ ..|.+...++...+| +..+|+-+||.|++|+..+
T Consensus 161 ---------~~El~~a~~~ga~iiGINnRdL--~t~---------~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l 220 (247)
T PRK13957 161 ---------EDEAKLALDCGAEIIGINTRDL--DTF---------QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKF 220 (247)
T ss_pred ---------HHHHHHHHhCCCCEEEEeCCCC--ccc---------eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHH
Confidence 1224556778999999988863 221 257788888888776 4678999999999999998
Q ss_pred HhhcCEEEEehhhhhCCcchHHhHh
Q psy2386 205 LNYIDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 205 l~~adgVmigRa~l~~P~i~~~~~~ 229 (311)
...+|||.||.+++..+.....+++
T Consensus 221 ~~~~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 221 RKLVDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred HHhCCEEEECHHHhCCCCHHHHHHH
Confidence 7669999999999999987665543
No 195
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.79 E-value=0.0018 Score=59.25 Aligned_cols=147 Identities=11% Similarity=0.155 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCC-------HHHHHHHHHHHHHcCCCEEE--eccCCCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386 44 EEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEIN--LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 114 (311)
Q Consensus 44 ~~~p~~~Ql~g~~-------~~~~~~aa~~~~~~g~d~Id--iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~ 114 (311)
.+.|++++|.+++ .+.+.-..+.+.+.|+|+|- +|.|.+... +..+.+.+++++..+ .+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~-----------~~l~~l~~v~~ea~~-~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEH-----------QSIKNIIQLVDAGLR-YG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHHHH-hC
Confidence 4578999999853 23344445667788998754 566643221 123445566666554 48
Q ss_pred ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG 194 (311)
Q Consensus 115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg 194 (311)
+|+.+=...|-...++.+.+.-.++...+.|+|.|.+- |. . +..+++.+.. .+||+..||
T Consensus 141 ~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------------y~---~-~~f~~vv~a~-~vPVviaGG 200 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------------YV---E-EGFERITAGC-PVPIVIAGG 200 (264)
T ss_pred CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------------CC---H-HHHHHHHHcC-CCcEEEeCC
Confidence 99887333343222333334455677779999999542 11 1 4466777777 599998888
Q ss_pred CC-CHHHHHHHHh----h-cCEEEEehhhhhCCc
Q psy2386 195 IK-TKKEIDLHLN----Y-IDGVMLGREAYKNPF 222 (311)
Q Consensus 195 I~-s~~da~~~l~----~-adgVmigRa~l~~P~ 222 (311)
=. +.+++.++.. . |.||.+||=.+..|.
T Consensus 201 ~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 201 KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH 234 (264)
T ss_pred CCCCHHHHHHHHHHHHHcCCceeeechhhhccCC
Confidence 77 4455665554 2 999999999988766
No 196
>KOG2334|consensus
Probab=97.77 E-value=4.9e-06 Score=78.95 Aligned_cols=133 Identities=13% Similarity=0.211 Sum_probs=108.1
Q ss_pred EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec
Q psy2386 74 EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA 153 (311)
Q Consensus 74 ~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~ 153 (311)
..++|++||..+....+.+.+++..+..+..+.+..++..+.|+ .|.|+-.+..+ ..++++.+++.+ .+.+|+
T Consensus 289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d----~~~~~~~le~~~--~l~i~~ 361 (477)
T KOG2334|consen 289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPAD----TVNLAERLEDLS--ALAIHG 361 (477)
T ss_pred hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcch----hhhHhhhHHhcc--chhhhh
Confidence 47889999999999999999999999999999999999999998 89998766544 478999999988 667787
Q ss_pred CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386 154 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMS 225 (311)
Q Consensus 154 Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~ 225 (311)
|.. ..+..-|+.|+.++...... .+|+++||++-...+- .+. +..||..++...+-.++.
T Consensus 362 r~~--------f~r~~~pa~~~~~k~~l~~~-~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~ 422 (477)
T KOG2334|consen 362 RKI--------FDRPTDPAKWDTPKMVLADL-CVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWS 422 (477)
T ss_pred ccc--------ccccCCCcCCCCHHHHHHHh-hhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccC
Confidence 753 22334467899888888777 6999999999887775 222 788888999887777653
No 197
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.77 E-value=0.00073 Score=65.52 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=54.8
Q ss_pred HHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHhh
Q psy2386 136 DFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------PELEIIINGGIKTKKEIDLHLNY 207 (311)
Q Consensus 136 e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-------~~ipvi~nGgI~s~~da~~~l~~ 207 (311)
+-++.+++.| +|.|++. .. .+|..|.. ....-+..+.++++.+ .++||++.|||.|++++..++..
T Consensus 167 ~eA~~A~~~g~aD~Ivvq-~E--AGGH~g~~---~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~al 240 (418)
T cd04742 167 EQAELARRVPVADDITVE-AD--SGGHTDNR---PLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFAL 240 (418)
T ss_pred HHHHHHHhCCCCCEEEEc-cc--CCCCCCCc---cHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHc
Confidence 3345555666 6999996 32 45554321 1111234455554443 14999999999999999999987
Q ss_pred -cCEEEEehhhhhCCc
Q psy2386 208 -IDGVMLGREAYKNPF 222 (311)
Q Consensus 208 -adgVmigRa~l~~P~ 222 (311)
||+|++|+.++.-+.
T Consensus 241 GAd~V~~GT~flat~E 256 (418)
T cd04742 241 GADFIVTGSINQCTVE 256 (418)
T ss_pred CCcEEeeccHHHhCcc
Confidence 999999999987654
No 198
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.77 E-value=0.00054 Score=61.88 Aligned_cols=109 Identities=9% Similarity=0.133 Sum_probs=79.3
Q ss_pred CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
..|+++=+ +|.+|+...+.++.+.++|+++|.|-=+ ....+.+++++++ ++||..
T Consensus 73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~Via-- 130 (240)
T cd06556 73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIA-- 130 (240)
T ss_pred CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEE--
Confidence 35788766 3567788889999888899999999522 1234556677665 477765
Q ss_pred eccCCC---------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC
Q psy2386 122 RIGIDD---------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE 186 (311)
Q Consensus 122 R~g~~~---------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ 186 (311)
|++... .+..++.++-++.++++|+|.|.+++. +.+.++++.+.+ +
T Consensus 131 Rtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------------~~e~~~~i~~~~-~ 191 (240)
T cd06556 131 HTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------------PVELAKQITEAL-A 191 (240)
T ss_pred EeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------------CHHHHHHHHHhC-C
Confidence 444311 123456788899999999999998744 457899999998 7
Q ss_pred CeEEEecC
Q psy2386 187 LEIIINGG 194 (311)
Q Consensus 187 ipvi~nGg 194 (311)
+|+++||.
T Consensus 192 ~P~~~~ga 199 (240)
T cd06556 192 IPLAGIGA 199 (240)
T ss_pred CCEEEEec
Confidence 99999874
No 199
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.74 E-value=0.0012 Score=64.57 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH
Q psy2386 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 143 (311)
Q Consensus 64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~ 143 (311)
++.+.++|+|+|-+.... +...+.++++.+++ .+.++.+-+ ....+ ..+.++.+.+
T Consensus 74 v~~a~~aGAdgV~v~g~~----------------~~~~~~~~i~~a~~-~G~~~~~g~---~s~~t----~~e~~~~a~~ 129 (430)
T PRK07028 74 VEMAAKAGADIVCILGLA----------------DDSTIEDAVRAARK-YGVRLMADL---INVPD----PVKRAVELEE 129 (430)
T ss_pred HHHHHHcCCCEEEEecCC----------------ChHHHHHHHHHHHH-cCCEEEEEe---cCCCC----HHHHHHHHHh
Confidence 345667889988876211 11224567777776 466665532 11111 2455778889
Q ss_pred cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
.|+|+|.++.-.. +. ..++..++.++++++.+ ++||++-||| +.+.+.++++. +|+|.+||+++..+.
T Consensus 130 ~GaD~I~~~pg~~------~~---~~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 130 LGVDYINVHVGID------QQ---MLGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSAD 198 (430)
T ss_pred cCCCEEEEEeccc------hh---hcCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCC
Confidence 9999998874321 00 01123468899999887 6999999999 68999999887 999999999998766
Q ss_pred c
Q psy2386 223 L 223 (311)
Q Consensus 223 i 223 (311)
.
T Consensus 199 ~ 199 (430)
T PRK07028 199 V 199 (430)
T ss_pred H
Confidence 4
No 200
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=97.74 E-value=6.6e-05 Score=71.51 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcH
Q psy2386 97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKY 174 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~ 174 (311)
.+|-.+.|-+..+++.+..|+.+| |... ..+ +..+-+.|++.|.++ +...+..| +.-.
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~------~~D-~~~a~~tg~~~I~vsnhggrqlD~g----------~st~ 260 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GILA------PED-AAGAGGTGADGIEVSNHGGRQLDWG----------ISTA 260 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CCCC------HHH-HHhhccCCceEEEEEcCCCccccCC----------CChH
Confidence 344455555555555555555444 3222 112 455677889999884 33222222 2345
Q ss_pred HHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHH
Q psy2386 175 NFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMIL 252 (311)
Q Consensus 175 ~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
+.+.++++.+++ +||++.|||+|..|+.++++. ||+|++||+++..- . .+ + ..-..+.++.+.+
T Consensus 261 ~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l------~---~~-g----~~GV~~~le~~~~ 326 (360)
T COG1304 261 DSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGL------A---AG-G----EAGVERVLEIIRK 326 (360)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHH------H---hc-c----HHHHHHHHHHHHH
Confidence 788899998863 999999999999999999997 99999999985421 1 11 1 1123456666666
Q ss_pred HHHHHHh-cCCcccHHHHHHh
Q psy2386 253 YIRQQLN-NNKIKNINSITRH 272 (311)
Q Consensus 253 ~~~~~~~-~g~~~~~~~~~k~ 272 (311)
.+...+. -|. ..+.++++-
T Consensus 327 El~~~M~L~G~-~~i~el~~~ 346 (360)
T COG1304 327 ELKIAMALTGA-KNIEELKRV 346 (360)
T ss_pred HHHHHHHhcCC-CcHHHhccC
Confidence 6665555 553 456666554
No 201
>PRK08005 epimerase; Validated
Probab=97.73 E-value=0.0029 Score=56.00 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=100.1
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
+.++|.+.|+..+.+-.+.++++|+|.+-+- =|.=+|| ..+=-++++++++.++.|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN-------------~tfG~~~i~~l~~~t~~~~DvHLMv-- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINN-------------ITFGMKTIQAVAQQTRHPLSFHLMV-- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-------------cccCHHHHHHHHhcCCCCeEEEecc--
Confidence 5678999999999999999999999865553 2322222 1122355677777777887664433
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-----c---------------------------------------cccC
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA-----F---------------------------------------LKKL 161 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-----~---------------------------------------~~G~ 161 (311)
.+ ...+++.+.++|++.|++|.-.. . ..|+
T Consensus 68 ~~------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf 141 (210)
T PRK08005 68 SS------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDG 141 (210)
T ss_pred CC------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCC
Confidence 22 34678888999999999984310 0 0133
Q ss_pred CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386 162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 162 ~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i 223 (311)
.|. ... +.-++.|+++++..+...+-.=|||+ .+.+.++.+. ||.+.+|++++.++..
T Consensus 142 ~GQ--~f~-~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d~ 200 (210)
T PRK08005 142 RGQ--QFI-AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTANY 200 (210)
T ss_pred ccc--eec-HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCH
Confidence 322 111 11245666666655445688889998 6778788776 9999999999876663
No 202
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.00095 Score=59.03 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=87.1
Q ss_pred CCCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE--eccCCCCCc
Q psy2386 54 DNEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH--RIGIDDINS 130 (311)
Q Consensus 54 g~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi--R~g~~~~~~ 130 (311)
|+++-.. +.-++.+.+.|+|.||+=+ ..|...-.|.+.+.+=+++|++++.-++.+|+ -.+.-.++
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~e- 140 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDE- 140 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHH-
Confidence 5555442 2334556678999999731 13444456899999999999999864455554 44433332
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-I 208 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-a 208 (311)
+....++.+.++|+|+|-=+ .|+++ ..+-.+.+.-+++.+ +.+-|=++|||+|.+|+..+++. +
T Consensus 141 --e~~~A~~i~~~aGAdFVKTS------TGf~~------~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga 206 (228)
T COG0274 141 --EKRKACEIAIEAGADFVKTS------TGFSA------GGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGA 206 (228)
T ss_pred --HHHHHHHHHHHhCCCEEEcC------CCCCC------CCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhH
Confidence 34677888899999999432 23321 124455555555543 25889999999999999999975 4
Q ss_pred CEE
Q psy2386 209 DGV 211 (311)
Q Consensus 209 dgV 211 (311)
.-+
T Consensus 207 ~Ri 209 (228)
T COG0274 207 TRI 209 (228)
T ss_pred HHh
Confidence 433
No 203
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.72 E-value=0.00055 Score=64.91 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=87.1
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccC
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGI 125 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~ 125 (311)
.+.+-+ |..++.+.++..+ .++|+|.|-|...- -+.+.+.+.++.+|+..+ +||.+-= +
T Consensus 98 ~V~aav-g~~~~~~er~~~L-~~agvD~ivID~a~---------------g~s~~~~~~ik~ik~~~~~~~viaGN-V-- 157 (352)
T PF00478_consen 98 LVAAAV-GTRDDDFERAEAL-VEAGVDVIVIDSAH---------------GHSEHVIDMIKKIKKKFPDVPVIAGN-V-- 157 (352)
T ss_dssp CEEEEE-ESSTCHHHHHHHH-HHTT-SEEEEE-SS---------------TTSHHHHHHHHHHHHHSTTSEEEEEE-E--
T ss_pred eEEEEe-cCCHHHHHHHHHH-HHcCCCEEEccccC---------------ccHHHHHHHHHHHHHhCCCceEEecc-c--
Confidence 355555 4555566666654 45799988775211 134666788889988874 7777631 1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEe---c---CccccccCCCCcCCCCCcCcHHHHHH---HHHhCCCCeEEEecCCC
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVH---A---RNAFLKKLNPKQNRKIPILKYNFVYN---LKKDFPELEIIINGGIK 196 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh---~---Rt~~~~G~~g~~~~~~~~~~~~~i~~---i~~~~~~ipvi~nGgI~ 196 (311)
.+.+-++.|.++|+|.|.|- | .|+...|.. . +-+..|.+ .++.. .+|||+-|||+
T Consensus 158 -------~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG-~-------PQ~tAv~~~a~~a~~~-~v~iIADGGi~ 221 (352)
T PF00478_consen 158 -------VTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVG-V-------PQLTAVYECAEAARDY-GVPIIADGGIR 221 (352)
T ss_dssp --------SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBS-C-------THHHHHHHHHHHHHCT-TSEEEEESS-S
T ss_pred -------CCHHHHHHHHHcCCCEEEEeccCCcccccccccccC-C-------cHHHHHHHHHHHhhhc-cCceeecCCcC
Confidence 13577888999999999984 1 122122211 1 23344444 44455 69999999999
Q ss_pred CHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 197 TKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 197 s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+.-|+.+.|.. ||.||+|+-+-+
T Consensus 222 ~sGDi~KAla~GAd~VMlG~llAg 245 (352)
T PF00478_consen 222 TSGDIVKALAAGADAVMLGSLLAG 245 (352)
T ss_dssp SHHHHHHHHHTT-SEEEESTTTTT
T ss_pred cccceeeeeeecccceeechhhcc
Confidence 99999999987 999999987743
No 204
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.70 E-value=0.0004 Score=60.97 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=58.3
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
+....+.|+|+|.+++-.. +.+ ...+.++..++.++++++..+++||++-||| +.+++.++++. +|+|.+|++
T Consensus 117 ~~~a~~~gaD~v~~~~~~~---~~~--~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~ 190 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFP---TPT--KKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSA 190 (212)
T ss_pred HHHHhHcCCCEEEECCccC---CCC--CCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHH
Confidence 4555678999998874322 111 1111222358999999988744999999999 68999999987 999999999
Q ss_pred hhhCCcc
Q psy2386 217 AYKNPFL 223 (311)
Q Consensus 217 ~l~~P~i 223 (311)
++.++..
T Consensus 191 i~~~~d~ 197 (212)
T PRK00043 191 ITGAEDP 197 (212)
T ss_pred hhcCCCH
Confidence 8765543
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.69 E-value=0.0018 Score=57.01 Aligned_cols=155 Identities=13% Similarity=0.118 Sum_probs=99.5
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----ccc----CcccCcccCChHHHHHHHHHHhccccc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----VQN----GFFGAILMTKPLLVSDCIKAMRDSVEI 115 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v~~----~~~G~~Ll~~~~~~~~iv~~v~~~~~~ 115 (311)
+.+++.=|.+.++++..+.++.+.+.|++.|||.+-.|... .++ --.|+.=.-+++.+.+.+++ +-
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA 81 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GA 81 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CC
Confidence 46788888999999999999999999999999998766431 111 11222223455555544432 11
Q ss_pred eeEEEEeccCCCCC-------------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386 116 DITVKHRIGIDDIN-------------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK 182 (311)
Q Consensus 116 pvsvKiR~g~~~~~-------------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~ 182 (311)
.+. +..+++.+- ..-..-| +..+.++|++.|.+.+-.. ..| -.+++.++.
T Consensus 82 ~Fi--vsP~~~~~v~~~~~~~~i~~iPG~~TptE-i~~A~~~Ga~~vKlFPA~~-~GG-------------~~yikal~~ 144 (204)
T TIGR01182 82 QFI--VSPGLTPELAKHAQDHGIPIIPGVATPSE-IMLALELGITALKLFPAEV-SGG-------------VKMLKALAG 144 (204)
T ss_pred CEE--ECCCCCHHHHHHHHHcCCcEECCCCCHHH-HHHHHHCCCCEEEECCchh-cCC-------------HHHHHHHhc
Confidence 122 122222100 0000112 2334567777777765321 111 378999999
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
-+|++|++..|||.. +.+.++++. +.+|.+|+.++....
T Consensus 145 plp~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 145 PFPQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLVPKDL 184 (204)
T ss_pred cCCCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhcCchh
Confidence 889999999999986 899999987 999999998876444
No 206
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.69 E-value=0.002 Score=58.37 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=102.3
Q ss_pred CCCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc--eeEE
Q psy2386 44 EEHPIAFQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITV 119 (311)
Q Consensus 44 ~~~p~~~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--pvsv 119 (311)
...|+++-+= -.+++.+.+.++.+.+.|+++|.|.=+..-+ . .++.|..-+-.++...+.+++++++.+- ++.|
T Consensus 68 ~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k-~-~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~I 145 (243)
T cd00377 68 VDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPK-K-CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVI 145 (243)
T ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-c-ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEE
Confidence 3578887643 2377889999999989999999996554321 1 1223444455777777777777776543 5666
Q ss_pred EEeccC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CC
Q psy2386 120 KHRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GI 195 (311)
Q Consensus 120 KiR~g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI 195 (311)
=.|..- ......++.++.++...++|+|.+-+++.+ +.+.++++.+.. ++||..+- +-
T Consensus 146 iARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------------~~~~~~~~~~~~-~~Pl~~~~~~~~ 207 (243)
T cd00377 146 IARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------------DPEEIRAFAEAP-DVPLNVNMTPGG 207 (243)
T ss_pred EEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHhcC-CCCEEEEecCCC
Confidence 666321 111335678899999999999999998663 568899999987 69987762 22
Q ss_pred --CCHHHHHHHHhhcCEEEEehhh
Q psy2386 196 --KTKKEIDLHLNYIDGVMLGREA 217 (311)
Q Consensus 196 --~s~~da~~~l~~adgVmigRa~ 217 (311)
.+.+++.++ ++..|.+|-.+
T Consensus 208 ~~~~~~~l~~l--G~~~v~~~~~~ 229 (243)
T cd00377 208 NLLTVAELAEL--GVRRVSYGLAL 229 (243)
T ss_pred CCCCHHHHHHC--CCeEEEEChHH
Confidence 355554443 37777777544
No 207
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.68 E-value=0.00016 Score=64.49 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh---hcC
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN---YID 209 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~---~ad 209 (311)
+..++++.+.+.|++.+++-.-++. .| .+.+++.|+++.+. +|+..-|||+|.+|+++++. .||
T Consensus 37 dP~~~a~~~~~~g~~~l~ivDLd~~-~~---------~~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~ 103 (221)
T TIGR00734 37 SPDDAAKVIEEIGARFIYIADLDRI-VG---------LGDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFAS 103 (221)
T ss_pred CHHHHHHHHHHcCCCEEEEEEcccc-cC---------CcchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccce
Confidence 3578999999999999998654431 12 13588999999986 48999999999999999954 499
Q ss_pred EEEEehhhhhCCcchHHhH
Q psy2386 210 GVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 210 gVmigRa~l~~P~i~~~~~ 228 (311)
-|.+|+.++.||.++.++.
T Consensus 104 rvvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 104 RVVVATETLDITELLRECY 122 (221)
T ss_pred EEeecChhhCCHHHHHHhh
Confidence 9999999999999888875
No 208
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.68 E-value=0.00043 Score=59.55 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 215 (311)
Q Consensus 137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR 215 (311)
-+..+.+.|+|+|.+..... +.++. ....+..++.++++++.. ++||++-|||. .+++.++++. +|+|.+|+
T Consensus 107 ~~~~~~~~g~d~i~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~-~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 107 EALRAEELGADYVGFGPVFP---TPTKP--GAGPPLGLELLREIAELV-EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred HHHHHhhcCCCEEEECCccC---CCCCC--CCCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 35667788999999875532 11111 111345789999998875 79999999995 7999999987 99999999
Q ss_pred hhhhCCcchHHh
Q psy2386 216 EAYKNPFLMSNF 227 (311)
Q Consensus 216 a~l~~P~i~~~~ 227 (311)
+++.++.....+
T Consensus 180 ~i~~~~~~~~~~ 191 (196)
T cd00564 180 AITGADDPAAAA 191 (196)
T ss_pred HhhcCCCHHHHH
Confidence 998766544333
No 209
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.67 E-value=0.0021 Score=59.48 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=102.0
Q ss_pred CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386 44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV 119 (311)
Q Consensus 44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv 119 (311)
.+.||++=+= |+ |....+.++.+.++|+.+|.|-=... +|.+....|-.+ -.++...+=+++++++. +.++.+
T Consensus 72 ~~iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~-pK~cgh~~g~~l-v~~ee~~~kI~Aa~~a~~~~d~~I 148 (285)
T TIGR02317 72 TDLPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVL-PKRCGHLPGKEL-VSREEMVDKIAAAVDAKRDEDFVI 148 (285)
T ss_pred cCCCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCC-ccccCCCCCccc-cCHHHHHHHHHHHHHhccCCCEEE
Confidence 3578888773 55 99999999999999999999975542 333222123233 34554455555555543 556777
Q ss_pred EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC--
Q psy2386 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG-- 194 (311)
Q Consensus 120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg-- 194 (311)
=-|+.-......++.++-++...++|+|.|-+++-+ +.+.++++.+.+ +.|+..| |+
T Consensus 149 iARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~-----------------~~e~i~~~~~~i-~~Pl~~n~~~~~~~ 210 (285)
T TIGR02317 149 IARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT-----------------SLEEFRQFAKAV-KVPLLANMTEFGKT 210 (285)
T ss_pred EEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCC
Confidence 778643333346678888999999999999998743 457789999998 5888543 33
Q ss_pred -CCCHHHHHHHHhhcCEEEEehhhhh
Q psy2386 195 -IKTKKEIDLHLNYIDGVMLGREAYK 219 (311)
Q Consensus 195 -I~s~~da~~~l~~adgVmigRa~l~ 219 (311)
..|.+++.++ ++..|..|..++.
T Consensus 211 p~~s~~eL~~l--Gv~~v~~~~~~~~ 234 (285)
T TIGR02317 211 PLFTADELREA--GYKMVIYPVTAFR 234 (285)
T ss_pred CCCCHHHHHHc--CCcEEEEchHHHH
Confidence 2344443332 3899999866544
No 210
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.66 E-value=0.0013 Score=58.40 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=101.3
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc--eeEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITV 119 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--pvsv 119 (311)
.+-..|+++++.-||+.. |..++...|+++|-.|.-|-..- +..| -+.-+...+.+....+...+.+ -|-|
T Consensus 82 r~v~iPvGvNVLrNd~va---A~~IA~a~gA~FIRVN~~tg~~~-tdqG---iieg~A~e~~r~r~~L~~~v~vlADv~V 154 (263)
T COG0434 82 REVSIPVGVNVLRNDAVA---ALAIAYAVGADFIRVNVLTGAYA-TDQG---IIEGNAAELARYRARLGSRVKVLADVHV 154 (263)
T ss_pred HhccccceeeeeccccHH---HHHHHHhcCCCEEEEEeeeceEe-cccc---eecchHHHHHHHHHhccCCcEEEeecch
Confidence 355789999999998753 34455677899999997664432 1111 1222333333333444422221 2344
Q ss_pred EEeccCCCCCcHHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386 120 KHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198 (311)
Q Consensus 120 KiR~g~~~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~ 198 (311)
|.-....+.+ +.+.++- ++..++|+++++|.+. | .+.|.+.++.+++.. ++||+.+-|+. +
T Consensus 155 KHa~~l~~~~----~~~~v~dtver~~aDaVI~tG~~T---G---------~~~d~~el~~a~~~~-~~pvlvGSGv~-~ 216 (263)
T COG0434 155 KHAVHLGNRS----LEEAVKDTVERGLADAVIVTGSRT---G---------SPPDLEELKLAKEAV-DTPVLVGSGVN-P 216 (263)
T ss_pred hcccccCCcC----HHHHHHHHHHccCCCEEEEecccC---C---------CCCCHHHHHHHHhcc-CCCEEEecCCC-H
Confidence 5444333332 3445555 7778899999998752 1 246999999999988 69999988885 7
Q ss_pred HHHHHHHhhcCEEEEehhhhhCC
Q psy2386 199 KEIDLHLNYIDGVMLGREAYKNP 221 (311)
Q Consensus 199 ~da~~~l~~adgVmigRa~l~~P 221 (311)
+.+.+++..|||+++|+.+=.+-
T Consensus 217 eN~~~~l~~adG~IvgT~lK~~G 239 (263)
T COG0434 217 ENIEELLKIADGVIVGTSLKKGG 239 (263)
T ss_pred HHHHHHHHHcCceEEEEEEccCC
Confidence 88999998899999998774443
No 211
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.65 E-value=0.0026 Score=59.07 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=103.0
Q ss_pred CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386 44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV 119 (311)
Q Consensus 44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv 119 (311)
.+.||++=+= | +|....+.++.+.++|+.+|.|-=.+. +|.+. ..++.-+-.++...+=+++++++. +.++.|
T Consensus 77 ~~iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~-pK~cg-~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~I 153 (292)
T PRK11320 77 CDLPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVG-AKRCG-HRPNKEIVSQEEMVDRIKAAVDARTDPDFVI 153 (292)
T ss_pred cCCCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCC-ccccC-CCCCCcccCHHHHHHHHHHHHHhccCCCeEE
Confidence 3578888773 5 999999999999999999999964442 33222 222323345555555555555543 566777
Q ss_pred EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC--
Q psy2386 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG-- 194 (311)
Q Consensus 120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg-- 194 (311)
=-|+.--.....++.++-++...++|+|.|-+++-+ +.+.++++.+.+ +.|+.+| |+
T Consensus 154 iARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~~n~~~~~~~ 215 (292)
T PRK11320 154 MARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT-----------------ELEMYRRFADAV-KVPILANITEFGAT 215 (292)
T ss_pred EEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCC
Confidence 778643333346678888999999999999998743 568899999988 6888443 33
Q ss_pred -CCCHHHHHHHHhhcCEEEEehhhhh
Q psy2386 195 -IKTKKEIDLHLNYIDGVMLGREAYK 219 (311)
Q Consensus 195 -I~s~~da~~~l~~adgVmigRa~l~ 219 (311)
..|.++..++ ++..|..|-.++.
T Consensus 216 p~~s~~~L~~l--Gv~~v~~~~~~~~ 239 (292)
T PRK11320 216 PLFTTEELASA--GVAMVLYPLSAFR 239 (292)
T ss_pred CCCCHHHHHHc--CCcEEEEChHHHH
Confidence 2355544333 3888888865543
No 212
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0058 Score=53.78 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=100.2
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
++++++.-+-..|.-.+. ++++.++|+|.+-+-+-- +...+...++..++ .++-+-+-+--
T Consensus 55 pd~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A----------------~~~TI~~~i~~A~~-~~~~v~iDl~~ 115 (217)
T COG0269 55 PDKIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAA----------------DDATIKKAIKVAKE-YGKEVQIDLIG 115 (217)
T ss_pred CCCeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecC----------------CHHHHHHHHHHHHH-cCCeEEEEeec
Confidence 578888888877776654 677889999999886333 33455566666555 46666666554
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEI 201 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da 201 (311)
.|+ +.+.++.+++.|++.+.+| ||+....|.+ ..|+.+..+++... ...|-..|||. ++++
T Consensus 116 ~~~-------~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~---------~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i 178 (217)
T COG0269 116 VWD-------PEQRAKWLKELGVDQVILHRGRDAQAAGKS---------WGEDDLEKIKKLSDLGAKVAVAGGIT-PEDI 178 (217)
T ss_pred CCC-------HHHHHHHHHHhCCCEEEEEecccHhhcCCC---------ccHHHHHHHHHhhccCceEEEecCCC-HHHH
Confidence 343 3567788888999999999 6765334532 23566777777652 27889999996 7999
Q ss_pred HHHHhh-cCEEEEehhhhhC
Q psy2386 202 DLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 202 ~~~l~~-adgVmigRa~l~~ 220 (311)
..+... +|-|.+||++.+-
T Consensus 179 ~~~~~~~~~ivIvGraIt~a 198 (217)
T COG0269 179 PLFKGIGADIVIVGRAITGA 198 (217)
T ss_pred HHHhcCCCCEEEECchhcCC
Confidence 998876 9999999998543
No 213
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0029 Score=55.90 Aligned_cols=157 Identities=16% Similarity=0.220 Sum_probs=107.6
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
.++.++|.+.|...+.+-.+.++++|+|.|-+-. |.=+|| ..+=-.+++++++.++.|+.|=+=+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN-------------iTfGp~~v~~l~~~t~~p~DvHLMV 70 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPN-------------ITFGPPVVKALRKITDLPLDVHLMV 70 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC-------------cccCHHHHHHHhhcCCCceEEEEec
Confidence 4688999999999999999999999999876653 222222 2222466788888888998886654
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--------------------------cc------------------ccc
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--------------------------NA------------------FLK 159 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--------------------------t~------------------~~~ 159 (311)
.+ ...++..+.++|++.||+|.= |. ...
T Consensus 71 --~~------p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 71 --EN------PDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred --CC------HHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 21 357788889999999998832 10 011
Q ss_pred cCCCCcCCCCCcCcHHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 160 KLNPKQNRKIPILKYNFVYNLKKDFP---ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 160 G~~g~~~~~~~~~~~~~i~~i~~~~~---~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
|+.|. ... +.-.+-++++++... ++-+-.=|||+ .+.+.++.+. ||.+.+|++++.+++.-..+
T Consensus 143 GfgGQ--~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~~d~~~~i 210 (220)
T COG0036 143 GFGGQ--KFI-PEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGADDYKATI 210 (220)
T ss_pred CCccc--ccC-HHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCCccHHHHH
Confidence 44442 111 123566777776653 34566779997 4777777765 99999999999998843333
No 214
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.61 E-value=0.00041 Score=62.37 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEEeccCCC----CCcHHH
Q psy2386 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIGIDD----INSYDF 133 (311)
Q Consensus 61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKiR~g~~~----~~~~~~ 133 (311)
...++.+.+.|+|+||+-+- +|...-.+.+.+.+-++++++.+ ++||.+-.-+ .+. ....+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 45667788899999998521 11111122344444444444433 7888776322 111 112224
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe----EEEecCC------CCHHHHHH
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE----IIINGGI------KTKKEIDL 203 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip----vi~nGgI------~s~~da~~ 203 (311)
+...++.+.+.|+|.|-..-.. ..| ....+.+.++++.+.. .+| |.+.||| ++.+++.+
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~--~~~--------~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGK--PVG--------ATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SS--SSC--------SHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEecCCc--ccc--------ccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHH
Confidence 5677888899999999764221 011 1112455666666665 588 9999999 99999999
Q ss_pred HHhh-c--CEEEEehhhhh
Q psy2386 204 HLNY-I--DGVMLGREAYK 219 (311)
Q Consensus 204 ~l~~-a--dgVmigRa~l~ 219 (311)
+++. | -|++.||.++.
T Consensus 217 ~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 217 FIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHTTHSEEEEEEHHHHHT
T ss_pred HHHcCChhHHHHHHHHHHc
Confidence 9986 8 89999998764
No 215
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.60 E-value=0.0089 Score=55.29 Aligned_cols=114 Identities=10% Similarity=0.196 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHhccccceeEEEE-eccCCCCC------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKH-RIGIDDIN------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKi-R~g~~~~~------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
+.+...++++-+++ .++||-..+ .+|..++. ++....+..+..++.|+|+|.+.-.+. ...+ + ..+
T Consensus 113 ni~~t~~v~~~a~~-~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~-hg~~--~---~~~ 185 (281)
T PRK06806 113 NIQKTKEIVELAKQ-YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNA-HGMY--N---GDP 185 (281)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCC-CCCC--C---CCC
Confidence 33444454444443 377776553 45522211 111234444445678999998743331 1111 1 235
Q ss_pred cCcHHHHHHHHHhCCCCeEEEec--CCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386 171 ILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~nG--gI~s~~da~~~l~~-adgVmigRa~l~~ 220 (311)
+.+++.++++++.+ ++|+++-| ||. .+++.++++. +++|-+.+++..+
T Consensus 186 ~l~~~~L~~i~~~~-~iPlV~hG~SGI~-~e~~~~~i~~G~~kinv~T~i~~a 236 (281)
T PRK06806 186 NLRFDRLQEINDVV-HIPLVLHGGSGIS-PEDFKKCIQHGIRKINVATATFNS 236 (281)
T ss_pred ccCHHHHHHHHHhc-CCCEEEECCCCCC-HHHHHHHHHcCCcEEEEhHHHHHH
Confidence 68999999999998 79999999 886 4778888876 9999999999885
No 216
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.59 E-value=0.00064 Score=59.07 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386 139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 139 ~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~ 217 (311)
..+.+.|+|++.+..-.. .+ ......++..++.++++++..+++||++-||| +++++.++++. +|||.+|+++
T Consensus 110 ~~a~~~g~dyi~~~~v~~--t~---~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i 183 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFP--TP---TKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAI 183 (196)
T ss_pred HHHhHcCCCEEEECCccC--CC---CCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHh
Confidence 456788999998743321 00 00112233578999999887656999999999 58999999876 9999999999
Q ss_pred hhCCc
Q psy2386 218 YKNPF 222 (311)
Q Consensus 218 l~~P~ 222 (311)
+..+.
T Consensus 184 ~~~~d 188 (196)
T TIGR00693 184 MQAAD 188 (196)
T ss_pred hCCCC
Confidence 86554
No 217
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.57 E-value=0.0073 Score=53.95 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=99.7
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEecc
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIG 124 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g 124 (311)
+.++|.+.|+..+.+-.+.+++.|+|.+-+- =|+=+||. .+| -++++++++. ++.|+.|=+=+
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~---tfg----------~~~i~~lr~~~~~~~~dvHLMv- 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL---TIG----------PMVCQALRKHGITAPIDVHLMV- 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc---ccC----------HHHHHHHHhhCCCCCEEEEecc-
Confidence 6789999999999999999999998875543 34322221 122 3467788887 58887775443
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-----c---------------------------------------ccc
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-----F---------------------------------------LKK 160 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-----~---------------------------------------~~G 160 (311)
++ ...+++.+.++|++.|++|.-.. . ..|
T Consensus 72 -~~------P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 72 -EP------VDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred -CC------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 22 34678888899999999984310 0 013
Q ss_pred CCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 161 LNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 161 ~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
+.|. .+. +.-++-|+++++.. .++.|-.-|||+ .+.+.++.+. +|.+++|++++..+.
T Consensus 145 f~GQ--~fi-~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 145 FGGQ--AFI-PSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCc--ccc-HHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 3332 111 11345566655532 246688889998 6788888876 999999999876554
No 218
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.57 E-value=0.0012 Score=60.23 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386 62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l 141 (311)
+-|++++++|+-.|-.----|+.. + ...|-+-+++|+.+. ++++.+++||.-++|.++ ..-++.|
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~-~-~~~~v~R~~~~~~I~----~Ik~~V~iPVIGi~K~~~---------~~Ea~~L 83 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADI-R-AAGGVARMADPKMIK----EIMDAVSIPVMAKVRIGH---------FVEAQIL 83 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhh-h-hcCCeeecCCHHHHH----HHHHhCCCCeEEeeehhH---------HHHHHHH
Confidence 346888999987777765667765 3 334677888888855 555567999999999864 3447889
Q ss_pred HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 142 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 142 ~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.++|+|.|--+.|.+ | ..+++..+|..+ ++|++ .|+.|.+++.+..+. +|.|--
T Consensus 84 ~eaGvDiIDaT~r~r--------------P-~~~~~~~iK~~~-~~l~M--AD~stleEal~a~~~Gad~I~T 138 (283)
T cd04727 84 EALGVDMIDESEVLT--------------P-ADEEHHIDKHKF-KVPFV--CGARNLGEALRRISEGAAMIRT 138 (283)
T ss_pred HHcCCCEEeccCCCC--------------c-HHHHHHHHHHHc-CCcEE--ccCCCHHHHHHHHHCCCCEEEe
Confidence 999999995444432 2 467888998887 66665 599999999999876 886543
No 219
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.52 E-value=0.0053 Score=57.03 Aligned_cols=156 Identities=10% Similarity=0.088 Sum_probs=98.4
Q ss_pred CCCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeE
Q psy2386 43 AEEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118 (311)
Q Consensus 43 ~~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvs 118 (311)
..+.||++=+ +|+.++ ..+.++.+.++|+.+|.|-=... +|.+. +.++.-+-.++...+=|++++++. +.++.
T Consensus 75 ~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~-pK~cg-~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 75 AVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVN-PKRCG-HLEGKRLISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred ccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC-ccccC-CCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence 3467888877 366666 78889999999999999975432 23222 223332334444444445555433 45577
Q ss_pred EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE---EecCC
Q psy2386 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII---INGGI 195 (311)
Q Consensus 119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi---~nGgI 195 (311)
|=-|+.-......++.++-++...++|+|.|-+|+-. +.+.++++.+.+ +.|+. ..|+-
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~-----------------~~~ei~~~~~~~-~~P~~~nv~~~~~ 213 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEAML-----------------DVEEMKRVRDEI-DAPLLANMVEGGK 213 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCeeEEEEecCC
Confidence 7667643333346678888999999999999998632 557899999987 56763 33332
Q ss_pred CCHHHHHHHHh-hcCEEEEehhhhh
Q psy2386 196 KTKKEIDLHLN-YIDGVMLGREAYK 219 (311)
Q Consensus 196 ~s~~da~~~l~-~adgVmigRa~l~ 219 (311)
.-.-++.++-+ +++.|..+-.++.
T Consensus 214 ~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 214 TPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred CCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 21123334433 3888988855543
No 220
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.47 E-value=0.0032 Score=60.39 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~ 133 (311)
+|+++.+.|+.+.+.||+.|-|-.|=+ ..++.-.+.++++|+.+ ++++.|-..-+|+. ++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~----~~ 204 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSR----AD 204 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCH----HH
Confidence 889999999888889999999842100 11455678889999887 46777766666654 35
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC-HHHHHHHHhh--cCE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-KKEIDLHLNY--IDG 210 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s-~~da~~~l~~--adg 210 (311)
..++++.+++.++.++- + ..++.|++..+++++.. ++||.+...+.+ ++++.++++. +|.
T Consensus 205 A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~~E~~~~~~~~~~~~i~~~a~d~ 267 (368)
T cd03329 205 ALRLGRALEELGFFWYE---------------D-PLREASISSYRWLAEKL-DIPILGTEHSRGALESRADWVLAGATDF 267 (368)
T ss_pred HHHHHHHhhhcCCCeEe---------------C-CCCchhHHHHHHHHhcC-CCCEEccCcccCcHHHHHHHHHhCCCCE
Confidence 68999999998887772 1 11234788888999987 799988888999 9999999976 998
Q ss_pred EEEe
Q psy2386 211 VMLG 214 (311)
Q Consensus 211 Vmig 214 (311)
|++-
T Consensus 268 v~~d 271 (368)
T cd03329 268 LRAD 271 (368)
T ss_pred EecC
Confidence 8874
No 221
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.46 E-value=0.011 Score=52.87 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=92.2
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.+++.=+.+.++++..+.++.+.+.|+..|||-+--|... +.+.++.+..++. .| .+.+-.|
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~--------------~~i~~l~~~~~~~--~p-~~~vGaG 76 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAH--------------EVFAELVKYAAKE--LP-GMILGVG 76 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHH--------------HHHHHHHHHHHhh--CC-CeEEeeE
Confidence 46788888999999999999999999999999987555321 2222222222221 12 1111222
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEec---------C-----------c------cccccCCCCcCCCCCcCcHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHA---------R-----------N------AFLKKLNPKQNRKIPILKYNFVY 178 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~---------R-----------t------~~~~G~~g~~~~~~~~~~~~~i~ 178 (311)
--- ..+-++.+.++|++++.--+ + | ++..|..--+-+.-......+++
T Consensus 77 TVl------~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ik 150 (222)
T PRK07114 77 SIV------DAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVK 150 (222)
T ss_pred eCc------CHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHH
Confidence 111 02334445555555553100 0 0 00111110000000012357899
Q ss_pred HHHHhCCCCeEEEecCCCC-HHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 179 NLKKDFPELEIIINGGIKT-KKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 179 ~i~~~~~~ipvi~nGgI~s-~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
.++.-+|+++++..|||.- .+++.++++. +.+|.+|+.++.+.+
T Consensus 151 al~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 151 AIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEA 196 (222)
T ss_pred HHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCccc
Confidence 9998889999999999995 6899999986 999999988876554
No 222
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.0079 Score=53.35 Aligned_cols=133 Identities=13% Similarity=0.213 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHc-CCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcH
Q psy2386 54 DNEPKKLAKSAKIIQKW-GYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY 131 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~-g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~ 131 (311)
..+.++-...|+++.+. +-++|-|- .|++. .|+-|+-...+-.+.+.+. +.-|.. +..++
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlP-----Y~~dD-- 140 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLP-----YTTDD-- 140 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEee-----ccCCC--
Confidence 45788999999999875 45777665 23332 3666665444444444332 333332 22222
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDG 210 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adg 210 (311)
.-++++|++.|+..|---+-.- =. ..+..+-..++-+.+.. ++|||.--||-+++|+...++. ||+
T Consensus 141 ---~v~arrLee~GcaavMPl~aPI-GS--------g~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~Da 207 (262)
T COG2022 141 ---PVLARRLEEAGCAAVMPLGAPI-GS--------GLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADA 207 (262)
T ss_pred ---HHHHHHHHhcCceEeccccccc-cC--------CcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccce
Confidence 2479999999999986433210 00 12335667788888888 8999999999999999999997 999
Q ss_pred EEEehhh
Q psy2386 211 VMLGREA 217 (311)
Q Consensus 211 VmigRa~ 217 (311)
|++.++.
T Consensus 208 VL~NTAi 214 (262)
T COG2022 208 VLLNTAI 214 (262)
T ss_pred eehhhHh
Confidence 9999887
No 223
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.39 E-value=0.0049 Score=60.23 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=52.1
Q ss_pred HHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386 138 VGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------PELEIIINGGIKTKKEIDLHLNY-I 208 (311)
Q Consensus 138 ~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-------~~ipvi~nGgI~s~~da~~~l~~-a 208 (311)
+..+++.| +|.|++. -. .+|..|.. ....-+..|.++++.+ ..+||++.|||.|++++..++.. |
T Consensus 174 A~~a~~~g~aD~Ivve-~E--AGGHtg~~---~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGA 247 (444)
T TIGR02814 174 AELARRVPVADDICVE-AD--SGGHTDNR---PLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGA 247 (444)
T ss_pred HHHHHhCCCCcEEEEe-cc--CCCCCCCC---cHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 45556666 5899885 22 44544321 0011223343333433 14899999999999999999987 9
Q ss_pred CEEEEehhhhhCCc
Q psy2386 209 DGVMLGREAYKNPF 222 (311)
Q Consensus 209 dgVmigRa~l~~P~ 222 (311)
|+|++|+.++.-+.
T Consensus 248 dgV~~GT~flat~E 261 (444)
T TIGR02814 248 DFIVTGSVNQCTVE 261 (444)
T ss_pred cEEEeccHHHhCcc
Confidence 99999999987554
No 224
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.38 E-value=0.0056 Score=54.28 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc-----c----cCcccCcccCChHHHHHH----------
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-----Q----NGFFGAILMTKPLLVSDC---------- 105 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v-----~----~~~~G~~Ll~~~~~~~~i---------- 105 (311)
+.+++.=|.+.++++..+.++.+.+.|++.|||-+--|.... + +--.|+.-.-+++.+...
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 467888899999999999999999999999999876553210 0 011222222233333322
Q ss_pred -------HHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386 106 -------IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178 (311)
Q Consensus 106 -------v~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~ 178 (311)
++..++ .++|+. +|.. ...| +..+.+.|++.+.+.+-.. . | ...+++
T Consensus 94 P~~~~~vi~~a~~-~~i~~i----PG~~------TptE-i~~a~~~Ga~~vKlFPa~~-~-g------------g~~~lk 147 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLI----PGVS------TPSE-LMLGMELGLRTFKFFPAEA-S-G------------GVKMLK 147 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEe----CCCC------CHHH-HHHHHHCCCCEEEEccchh-c-c------------CHHHHH
Confidence 222222 122211 1111 1234 5667788888888865321 1 1 247899
Q ss_pred HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
.++.-+|++|++..|||.. +++.++++. +..+..|..++.
T Consensus 148 ~l~~p~p~~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L~~ 188 (212)
T PRK05718 148 ALAGPFPDVRFCPTGGISP-ANYRDYLALPNVLCIGGSWMVP 188 (212)
T ss_pred HHhccCCCCeEEEeCCCCH-HHHHHHHhCCCEEEEEChHhCC
Confidence 9998888999999999986 889999875 444444444443
No 225
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.38 E-value=0.013 Score=54.34 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=95.3
Q ss_pred CCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCC-CccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEE
Q psy2386 44 EEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVK 120 (311)
Q Consensus 44 ~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvK 120 (311)
...||++-+= |-+|..+.+.++.+.++|+.+|.|-=.+ |..+---++.|...+-.++...+.+++++++ .+.++.|=
T Consensus 77 ~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~Ii 156 (285)
T TIGR02320 77 TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMII 156 (285)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEE
Confidence 3568776552 4689999999999999999999994332 1111001112223344566666666777665 34445554
Q ss_pred EeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEec--
Q psy2386 121 HRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIING-- 193 (311)
Q Consensus 121 iR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nG-- 193 (311)
-|+.-- .....++.++-++...++|+|.|-+++.. .+.+.+.++.+.+ |++|++.+.
T Consensus 157 ARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------------~~~~ei~~~~~~~~~~~p~~pl~~~~~~ 220 (285)
T TIGR02320 157 ARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK----------------KDPDEILEFARRFRNHYPRTPLVIVPTS 220 (285)
T ss_pred EecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------------CCHHHHHHHHHHhhhhCCCCCEEEecCC
Confidence 453211 11235678899999999999999998421 1345555555554 357888765
Q ss_pred -CCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 194 -GIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 194 -gI~s~~da~~~l~~-adgVmigRa~l 218 (311)
+..|. .++-+. +..|..|-.++
T Consensus 221 ~~~~~~---~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 221 YYTTPT---DEFRDAGISVVIYANHLL 244 (285)
T ss_pred CCCCCH---HHHHHcCCCEEEEhHHHH
Confidence 33344 344433 88888885543
No 226
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.35 E-value=0.004 Score=59.41 Aligned_cols=148 Identities=10% Similarity=-0.010 Sum_probs=104.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEe
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHR 122 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR 122 (311)
.-|+-..++..+++.+.+.|+...+.||..+-+-.|- .+++.-.+.++++|+.++ +.+.+...
T Consensus 130 ~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred CeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4455556666678887777776667799888775431 234555677888888873 55666555
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
-+|+. ++..++++.+++.++.+|-= ..++-||+..+++++.. ++||.+...+.++.++.
T Consensus 195 ~~~~~----~~A~~~~~~l~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~ 253 (355)
T cd03321 195 QSLTV----PEAIERGQALDQEGLTWIEE----------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEMF 253 (355)
T ss_pred CCcCH----HHHHHHHHHHHcCCCCEEEC----------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHHH
Confidence 55553 35789999999999888831 11234889999999998 79999888999999999
Q ss_pred HHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386 203 LHLNY--IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 203 ~~l~~--adgVmigRa~l~~P~i~~~~~ 228 (311)
++++. +|.|++-=.-.+...=+.++.
T Consensus 254 ~~i~~~~~d~i~~~~~~~GGit~~~~ia 281 (355)
T cd03321 254 KALSAGACDLVMPDLMKIGGVTGWLRAS 281 (355)
T ss_pred HHHHhCCCCeEecCHhhhCCHHHHHHHH
Confidence 99975 998887654444443333443
No 227
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.35 E-value=0.034 Score=51.47 Aligned_cols=76 Identities=14% Similarity=0.264 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CCCCHHHHHHHHhh-cCEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI~s~~da~~~l~~-adgV 211 (311)
.+..+..++.|+|+|.+.-.+. ..-|. ..+..+++.++++++.+ ++|+++-| ||. .+++.++++. +++|
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~-hg~~~-----~~~~l~~e~L~~i~~~~-~iPlv~hGgSGi~-~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTS-HGKYK-----GEPGLDFERLKEIKELT-NIPLVLHGASGIP-EEQIKKAIKLGIAKI 227 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCcc-ccccC-----CCCccCHHHHHHHHHHh-CCCEEEECCCCCC-HHHHHHHHHcCCCEE
Confidence 3434444558999999742221 01111 12457999999999998 79999999 887 4778888876 9999
Q ss_pred EEehhhh
Q psy2386 212 MLGREAY 218 (311)
Q Consensus 212 migRa~l 218 (311)
-+++.+.
T Consensus 228 Nv~T~l~ 234 (282)
T TIGR01859 228 NIDTDCR 234 (282)
T ss_pred EECcHHH
Confidence 9999885
No 228
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.33 E-value=0.026 Score=49.57 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=86.3
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
..+++.=|.+.++++..+.++.+.+.|+..|||.+--|.. .+.++.+++.. | .+.+-.|
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a------------------~~~I~~l~~~~--~-~~~vGAG 61 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAA------------------LDAIRAVAAEV--E-EAIVGAG 61 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccH------------------HHHHHHHHHHC--C-CCEEeeE
Confidence 4678888999999999999999999999999999755532 23344444333 1 1212222
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEec---------C-----------c------cccccCCCCcCCCCCcC-cHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHA---------R-----------N------AFLKKLNPKQNRKIPIL-KYNFV 177 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~---------R-----------t------~~~~G~~g~~~~~~~~~-~~~~i 177 (311)
---+ .+-++.+.++|++++.--+ + | ++..|..=-+-+.-... -..++
T Consensus 62 TVl~------~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yi 135 (201)
T PRK06015 62 TILN------AKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFL 135 (201)
T ss_pred eCcC------HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHH
Confidence 1110 2334445555555553100 0 0 00111100000000001 24789
Q ss_pred HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+.++.-+|++|++..|||.. +++.++++. +..+..|..+..
T Consensus 136 kal~~plp~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 136 KALSSPLAGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred HHHHhhCCCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhCC
Confidence 99999899999999999976 799999976 555555655543
No 229
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=97.28 E-value=0.0011 Score=56.27 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 142 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~ 142 (311)
-|++++++|+-.|------|... ++ ..|-+-|.||..+.+|.++ +++||..|+|+| .+.| ++.|+
T Consensus 26 QAkIAE~AGA~AVMaLervPadi-R~-~GGVaRMsDP~~I~eI~~a----VsIPVMAK~RIG--------HfvE-AqiLe 90 (208)
T PF01680_consen 26 QAKIAEEAGAVAVMALERVPADI-RA-AGGVARMSDPKMIKEIMDA----VSIPVMAKVRIG--------HFVE-AQILE 90 (208)
T ss_dssp HHHHHHHHT-SEEEE-SS-HHHH-HH-TTS---S--HHHHHHHHHH-----SSEEEEEEETT---------HHH-HHHHH
T ss_pred HHHHHHHhCCeEEEEeccCCHhH-Hh-cCCccccCCHHHHHHHHHh----eEeceeeccccc--------eeeh-hhhHH
Confidence 46888999987776655556553 33 3577889999998877666 789999999998 2333 78999
Q ss_pred HcCCCEEEEecCccccccCCCCcCCCCCcCcHH-HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 143 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN-FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 143 ~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~-~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+.|+|+|-=+-- ++ |+|.. .|. |..+ ++|++.. -++.-++.+-+.. |.++
T Consensus 91 algVD~IDESEV------LT--------pAD~~~HI~--K~~F-~vPFVcG--arnLGEALRRI~EGAaMI 142 (208)
T PF01680_consen 91 ALGVDYIDESEV------LT--------PADEENHID--KHNF-KVPFVCG--ARNLGEALRRIAEGAAMI 142 (208)
T ss_dssp HTT-SEEEEETT------S----------S-SS------GGG--SS-EEEE--ESSHHHHHHHHHTT-SEE
T ss_pred HhCCceeccccc------cc--------ccccccccc--chhC-CCCeEec--CCCHHHHHhhHHhhhhhh
Confidence 999999954321 11 23332 121 3455 6887643 3455555555543 5544
No 230
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.28 E-value=0.0048 Score=55.69 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=95.4
Q ss_pred CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386 45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV 119 (311)
Q Consensus 45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv 119 (311)
+.|+++=+ +|++|..+.+.++.+.++|+.+|.|.=. |. ..|..++ .++...+=+++++++. +..+.|
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I 140 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCG-------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVI 140 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-------TSTT-B---HHHHHHHHHHHHHHHSSTTSEE
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccC-------CCCCcee-CHHHHHHHHHHHHHhccCCeEEE
Confidence 57888877 3777999999999999999999999865 33 1344455 5555555555555443 333555
Q ss_pred EEeccCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 120 KHRIGID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 120 KiR~g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
=-|+.-- .....++.++-++...++|+|.|-+++.. +-+.++++.+.+ +.|+..+-+ ..
T Consensus 141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~v~~~-~~ 201 (238)
T PF13714_consen 141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ-----------------SEEEIERIVKAV-DGPLNVNPG-PG 201 (238)
T ss_dssp EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS-----------------SHHHHHHHHHHH-SSEEEEETT-SS
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEcC-CC
Confidence 5565321 12335677888999999999999998764 346689999988 799877653 22
Q ss_pred HHHHHHHHhh-cCEEEEehhh
Q psy2386 198 KKEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 198 ~~da~~~l~~-adgVmigRa~ 217 (311)
.-++.++.+. +..|..|-.+
T Consensus 202 ~~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 202 TLSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp SS-HHHHHHTTESEEEETSHH
T ss_pred CCCHHHHHHCCCcEEEEcHHH
Confidence 2444444443 8888887554
No 231
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.23 E-value=0.011 Score=61.00 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i 177 (311)
+++.+.++++...+ ++.-+.|-++. .+=++++.++|++.|-|..|.- ..+ ..|.+..
T Consensus 145 ~~~~l~~l~~~a~~-lGme~LvEvh~-----------~~el~~a~~~ga~iiGINnRdL--~tf---------~vd~~~t 201 (695)
T PRK13802 145 DDAQLKHLLDLAHE-LGMTVLVETHT-----------REEIERAIAAGAKVIGINARNL--KDL---------KVDVNKY 201 (695)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeCC-----------HHHHHHHHhCCCCEEEEeCCCC--ccc---------eeCHHHH
Confidence 35567777776555 57777776653 1224556778999999998873 222 2577888
Q ss_pred HHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 178 YNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 178 ~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
.++...+| ++.+|+-+||.|++|+..+.+. +|+|.||.++|..|..-..+++.+
T Consensus 202 ~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~ 257 (695)
T PRK13802 202 NELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLV 257 (695)
T ss_pred HHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHH
Confidence 88888776 4778999999999999999987 999999999999999766665543
No 232
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0089 Score=54.12 Aligned_cols=109 Identities=12% Similarity=0.214 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i 177 (311)
+.+.+.++++...+ .+.-+-|-+.- ..| ++++.+.|+..|-|..|. +..+. .|.+..
T Consensus 141 ~~~~l~el~~~A~~-LGm~~LVEVh~----------~eE-l~rAl~~ga~iIGINnRd--L~tf~---------vdl~~t 197 (254)
T COG0134 141 DDEQLEELVDRAHE-LGMEVLVEVHN----------EEE-LERALKLGAKIIGINNRD--LTTLE---------VDLETT 197 (254)
T ss_pred CHHHHHHHHHHHHH-cCCeeEEEECC----------HHH-HHHHHhCCCCEEEEeCCC--cchhe---------ecHHHH
Confidence 33445555555443 35555554431 123 334445888888888886 33332 578888
Q ss_pred HHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386 178 YNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 178 ~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~ 229 (311)
.++....|+ ..+|.-+||.|++|+.++... +||+.||.++|.++.....+.+
T Consensus 198 ~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 198 EKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred HHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHH
Confidence 888887764 778999999999999999988 9999999999999998555443
No 233
>PRK06801 hypothetical protein; Provisional
Probab=97.16 E-value=0.023 Score=52.61 Aligned_cols=114 Identities=14% Similarity=0.205 Sum_probs=70.9
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-ccCCCC---------CcHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCC
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IGIDDI---------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPK 164 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~~~~---------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~ 164 (311)
.++.+...++++..+. .+++|-.-+. +|-.++ ..+....+..+.+++.|+|+|.+.=.+. .| |.
T Consensus 111 eeNi~~t~~v~~~a~~-~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~--Hg~y~-- 185 (286)
T PRK06801 111 EENVRQTREVVKMCHA-VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNA--HGKYK-- 185 (286)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCC--CCCCC--
Confidence 3455566666665544 3665544432 221111 0011223334444579999999843332 22 11
Q ss_pred cCCCCCcCcHHHHHHHHHhCCCCeEEEecC--CCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 165 QNRKIPILKYNFVYNLKKDFPELEIIINGG--IKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg--I~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
..++.+++.++++++.+ ++|++.-|| |. .+++.++++. ++.|=+++++..
T Consensus 186 ---~~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 186 ---GEPKLDFARLAAIHQQT-GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred ---CCCCCCHHHHHHHHHhc-CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHH
Confidence 12357999999999988 799999998 76 5778888876 999999998843
No 234
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=97.16 E-value=0.0058 Score=55.91 Aligned_cols=106 Identities=15% Similarity=0.278 Sum_probs=73.8
Q ss_pred CeEEEec-C---CCHHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE---
Q psy2386 47 PIAFQVG-D---NEPKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--- 118 (311)
Q Consensus 47 p~~~Ql~-g---~~~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--- 118 (311)
++++-+- | .++++ +..+.+.++++|+++|.|--| +...+.+++++++ ++||.
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHi 137 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHL 137 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeee
Confidence 4776662 3 45666 566677778799999999632 3455667777654 88885
Q ss_pred ------------EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC
Q psy2386 119 ------------VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE 186 (311)
Q Consensus 119 ------------vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ 186 (311)
.|+ .|-++ +..+++++-++.++++|++.|.+-+-. -+.++++.+.+ +
T Consensus 138 GL~pq~~~~~gg~~i-~grt~-~~a~~~i~ra~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~ 196 (264)
T PRK00311 138 GLTPQSVNVLGGYKV-QGRDE-EAAEKLLEDAKALEEAGAFALVLECVP------------------AELAKEITEAL-S 196 (264)
T ss_pred cccceeecccCCeee-ecCCH-HHHHHHHHHHHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-C
Confidence 222 22222 224567888999999999999885442 26789999998 7
Q ss_pred CeEEEec
Q psy2386 187 LEIIING 193 (311)
Q Consensus 187 ipvi~nG 193 (311)
+|+|+-|
T Consensus 197 iP~igiG 203 (264)
T PRK00311 197 IPTIGIG 203 (264)
T ss_pred CCEEEec
Confidence 9999876
No 235
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.15 E-value=0.0022 Score=70.19 Aligned_cols=113 Identities=10% Similarity=0.091 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC-CCCCcCcHH
Q psy2386 98 KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKYN 175 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~-~~~~~~~~~ 175 (311)
.++-+.++|..+|+.. +.||+||+-.+..- -.++.-+.++|+|.|+|.|...- .|-+|..- .+.+ .-|+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v-------g~ia~gvaka~aD~I~IdG~~GG-TGAap~~~~~~~G-lP~e 1049 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV-------GTIATGVAKAYADLITISGYDGG-TGASPLTSVKYAG-SPWE 1049 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc-------cHHHhChhhcCCCEEEEeCCCCC-cccccHHHHhhCC-ccHH
Confidence 5677888899999876 67999999865222 13444567899999999987531 11111100 0111 2354
Q ss_pred H-HHHHHHhC------CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 176 F-VYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 176 ~-i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
. +.++.+.+ .++.+++.|++.|+.|+...+.. ||.|.+||++|-
T Consensus 1050 ~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~li 1101 (1485)
T PRK11750 1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMV 1101 (1485)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHH
Confidence 3 33333221 25999999999999999999876 999999999854
No 236
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.14 E-value=0.0031 Score=57.21 Aligned_cols=159 Identities=14% Similarity=0.228 Sum_probs=77.4
Q ss_pred ccccCCCCCCeEEEecCCCHH-HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC---hHHHHHHHHHHhccc
Q psy2386 38 CLDFNAEEHPIAFQVGDNEPK-KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK---PLLVSDCIKAMRDSV 113 (311)
Q Consensus 38 ~l~~~~~~~p~~~Ql~g~~~~-~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~---~~~~~~iv~~v~~~~ 113 (311)
+|..-. +.||+.=+++.||- ++..-.+.+.+.||.+|. |+ |..-...+.+...|... .++=.++++..++.
T Consensus 75 iLp~v~-~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~- 149 (268)
T PF09370_consen 75 ILPVVK-DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK- 149 (268)
T ss_dssp HGGG-S-SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-
T ss_pred hhhhcc-CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-
Confidence 444333 58999999999994 466666788899999985 54 64333333333333322 12223444444442
Q ss_pred cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH----HHHHHHH---hC-C
Q psy2386 114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN----FVYNLKK---DF-P 185 (311)
Q Consensus 114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~----~i~~i~~---~~-~ 185 (311)
+. +|+-.-. + .+=++.+.++|+|.|++|-... ..|..|.++. ..++ .+.++.+ .+ |
T Consensus 150 gl-~T~~yvf--~--------~e~A~~M~~AGaDiiv~H~GlT-~gG~~Ga~~~----~sl~~a~~~~~~i~~aa~~v~~ 213 (268)
T PF09370_consen 150 GL-FTTAYVF--N--------EEQARAMAEAGADIIVAHMGLT-TGGSIGAKTA----LSLEEAAERIQEIFDAARAVNP 213 (268)
T ss_dssp T--EE--EE---S--------HHHHHHHHHHT-SEEEEE-SS-----------S------HHHHHHHHHHHHHHHHCC-T
T ss_pred CC-eeeeeec--C--------HHHHHHHHHcCCCEEEecCCcc-CCCCcCcccc----CCHHHHHHHHHHHHHHHHHhCC
Confidence 33 2221111 1 3456777899999999994321 3444443221 1222 2333333 22 4
Q ss_pred C-CeEEEecCCCCHHHHHHHHhh---cCEEEEehhh
Q psy2386 186 E-LEIIINGGIKTKKEIDLHLNY---IDGVMLGREA 217 (311)
Q Consensus 186 ~-ipvi~nGgI~s~~da~~~l~~---adgVmigRa~ 217 (311)
+ |-+.-.|-|.+|+|++.+++. |+|..-|+.+
T Consensus 214 dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 214 DIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp T-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 5 445566789999999999986 6776665443
No 237
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.12 E-value=0.037 Score=51.81 Aligned_cols=134 Identities=10% Similarity=0.168 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386 55 NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~ 133 (311)
.+.++-.+.|+++.++ |-++|-|-. ..+ --.++.|+..+.+-.+.+.+. +.-|.+=+. ++
T Consensus 147 ~ta~eAv~~a~lare~~~~~~iKlEv-------i~e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~-----~d---- 207 (326)
T PRK11840 147 YTAEEAVRTLRLAREAGGWDLVKLEV-------LGD--AKTLYPDMVETLKATEILVKE-GFQVMVYCS-----DD---- 207 (326)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEE-------cCC--CCCcccCHHHHHHHHHHHHHC-CCEEEEEeC-----CC----
Confidence 4678888888888876 446666642 111 123455555444444433221 333322222 11
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
...++++++.|+.++ -+-..-. | ||. +..+-+.++.+.+.. ++||+.-+||.+++|+.+.++. ||||.
T Consensus 208 -~~~a~~l~~~g~~av--mPl~~pI-G-sg~-----gv~~p~~i~~~~e~~-~vpVivdAGIg~~sda~~AmelGadgVL 276 (326)
T PRK11840 208 -PIAAKRLEDAGAVAV--MPLGAPI-G-SGL-----GIQNPYTIRLIVEGA-TVPVLVDAGVGTASDAAVAMELGCDGVL 276 (326)
T ss_pred -HHHHHHHHhcCCEEE--eeccccc-c-CCC-----CCCCHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 467899999999433 3311101 1 111 123778899998885 7999999999999999999997 99999
Q ss_pred Eehhhh
Q psy2386 213 LGREAY 218 (311)
Q Consensus 213 igRa~l 218 (311)
+.+|..
T Consensus 277 ~nSaIa 282 (326)
T PRK11840 277 MNTAIA 282 (326)
T ss_pred Ecceec
Confidence 999985
No 238
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.12 E-value=0.0041 Score=59.09 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
+..+.+.|+|+|.+.+-.... + ++ ...+..++.++.+++.. ++||++-|||. ++++.+++.. +|||.++++
T Consensus 253 ~~~A~~~GaDYI~lGPvf~T~---t-Kp--~~~~~Gle~l~~~~~~~-~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisa 324 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFPTP---T-KP--GKAPAGLEYLKYAAKEA-PIPWFAIGGID-KSNIPEVLQAGAKRVAVVRA 324 (347)
T ss_pred HHHHHHcCCCEEEECCCcCCC---C-CC--CCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCcEEEEeHH
Confidence 455667899999886543210 0 11 11246799999999887 69999999996 8999998876 999999999
Q ss_pred hhhCCc
Q psy2386 217 AYKNPF 222 (311)
Q Consensus 217 ~l~~P~ 222 (311)
++..+.
T Consensus 325 I~~a~d 330 (347)
T PRK02615 325 IMGAED 330 (347)
T ss_pred HhCCCC
Confidence 986544
No 239
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.11 E-value=0.0042 Score=54.33 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=89.1
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc-----c----cCcccCcccCChHHHHHHHHHHhccccce
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-----Q----NGFFGAILMTKPLLVSDCIKAMRDSVEID 116 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v-----~----~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p 116 (311)
.+++.=|.+.++++..+.++.+.+.|+..|||.+--|.... + .--.|+.=..+++.+.+.+++ +..
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a-----GA~ 82 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA-----GAQ 82 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH-----T-S
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc-----CCC
Confidence 46888889999999999999999999999999977662210 0 001122222334433333322 111
Q ss_pred eEEEEeccCCCCC-------------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386 117 ITVKHRIGIDDIN-------------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 183 (311)
Q Consensus 117 vsvKiR~g~~~~~-------------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~ 183 (311)
+.| .++++.+- ..-..-| +..+.++|++.+.+.+-.. .+| ..+++.++.-
T Consensus 83 Fiv--SP~~~~~v~~~~~~~~i~~iPG~~TptE-i~~A~~~G~~~vK~FPA~~-~GG-------------~~~ik~l~~p 145 (196)
T PF01081_consen 83 FIV--SPGFDPEVIEYAREYGIPYIPGVMTPTE-IMQALEAGADIVKLFPAGA-LGG-------------PSYIKALRGP 145 (196)
T ss_dssp EEE--ESS--HHHHHHHHHHTSEEEEEESSHHH-HHHHHHTT-SEEEETTTTT-TTH-------------HHHHHHHHTT
T ss_pred EEE--CCCCCHHHHHHHHHcCCcccCCcCCHHH-HHHHHHCCCCEEEEecchh-cCc-------------HHHHHHHhcc
Confidence 111 22222100 0000112 2234467777777765432 111 4789999998
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386 184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i 223 (311)
+|+++++..|||.. +++.++++. +.+|.+|+.+..+.++
T Consensus 146 ~p~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~~~~~i 185 (196)
T PF01081_consen 146 FPDLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLFPKDLI 185 (196)
T ss_dssp TTT-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGGSHHHH
T ss_pred CCCCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhcCHHHH
Confidence 88999999999985 889999987 9999999877665443
No 240
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.09 E-value=0.015 Score=55.43 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=101.7
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH 121 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi 121 (311)
...|+-..+.+.+++.+.+.++...+.||..+-+..|-+.++.. --.+++.-.+.++++|+.+ ++.+.|-.
T Consensus 111 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~-------~~~~~~~D~~~i~avr~~~g~~~~l~vDa 183 (352)
T cd03325 111 DRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID-------TSKKVDAAVERVAALREAVGPDIDIGVDF 183 (352)
T ss_pred ceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccCC-------CHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 34456555667789888777776777899999998763321100 0023556677888888876 35566655
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.-+|+. ++..++++.+++.|+.+|- + ..++-||+..+++++.. .+||.+.=.+.+++++
T Consensus 184 N~~~~~----~~A~~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~L~~~~-~~pia~dEs~~~~~~~ 242 (352)
T cd03325 184 HGRVSK----PMAKDLAKELEPYRLLFIE---------------E-PVLPENVEALAEIAART-TIPIATGERLFSRWDF 242 (352)
T ss_pred CCCCCH----HHHHHHHHhccccCCcEEE---------------C-CCCccCHHHHHHHHHhC-CCCEEecccccCHHHH
Confidence 555653 3568899999998888872 1 11234788999999987 7998887788999999
Q ss_pred HHHHhh--cCEEEEeh
Q psy2386 202 DLHLNY--IDGVMLGR 215 (311)
Q Consensus 202 ~~~l~~--adgVmigR 215 (311)
..+++. +|.|++--
T Consensus 243 ~~~~~~~~~d~v~~d~ 258 (352)
T cd03325 243 KELLEDGAVDIIQPDI 258 (352)
T ss_pred HHHHHhCCCCEEecCc
Confidence 999875 89888753
No 241
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.09 E-value=0.0089 Score=54.11 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 142 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~ 142 (311)
.|++++++||+.|=+--.+-... .|+-...+-..+.+.+.++.|.+.+++||++.+..|+.+. +...+.++.+.
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s---~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v~~~~ 94 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAAS---LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVRELE 94 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHh---cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHHHHHH
Confidence 46788889999998863222111 1333333445677888888888888999999999987643 25678899999
Q ss_pred HcCCCEEEEecCcc-ccccCCCCcCCCCCcC-cHHHHHHHHHhC---CCCeEEEecCC-----CCHHHHHHHHh----h-
Q psy2386 143 SAGCRTFIVHARNA-FLKKLNPKQNRKIPIL-KYNFVYNLKKDF---PELEIIINGGI-----KTKKEIDLHLN----Y- 207 (311)
Q Consensus 143 ~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~-~~~~i~~i~~~~---~~ipvi~nGgI-----~s~~da~~~l~----~- 207 (311)
++|+++|.+-+... ...|..|... ..++. ..+.|+.+++.. ++++|++-=|. .+.+++.+..+ .
T Consensus 95 ~~G~~gv~iED~~~~k~~g~~~~~~-~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AG 173 (243)
T cd00377 95 EAGAAGIHIEDQVGPKKCGHHGGKV-LVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAG 173 (243)
T ss_pred HcCCEEEEEecCCCCccccCCCCCe-ecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcC
Confidence 99999999954431 0112111111 11111 123344444433 25677776333 35566655442 2
Q ss_pred cCEEEEehhhhhCCcchHHhHh
Q psy2386 208 IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 208 adgVmigRa~l~~P~i~~~~~~ 229 (311)
||+|++=-.. ++.-++++.+
T Consensus 174 AD~v~v~~~~--~~~~~~~~~~ 193 (243)
T cd00377 174 ADGIFVEGLK--DPEEIRAFAE 193 (243)
T ss_pred CCEEEeCCCC--CHHHHHHHHh
Confidence 9999994222 5555555544
No 242
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.09 E-value=0.01 Score=54.63 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+| +..|-...-..+.-.++++.+++.+ ++||.+-+... +.+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~----------GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-----~~~ 79 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVL----------GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN-----STR 79 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc-----cHH
Confidence 478889999999989999999888 2334445555555567777776665 57877765432 123
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE------EecCCCCHHHHHHHHh
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII------INGGIKTKKEIDLHLN 206 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi------~nGgI~s~~da~~~l~ 206 (311)
+.+++++.+++.|+|++.+.+... ...+. ..-+++.+++.+.. ++||+ ..|---+++.+.++.+
T Consensus 80 ~~i~~a~~a~~~Gad~v~v~pP~y--~~~~~-------~~~~~~~~~ia~~~-~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 80 EAIELARHAEEAGADGVLVVPPYY--NKPSQ-------EGIVAHFKAVADAS-DLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcC--CCCCH-------HHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHhc
Confidence 578999999999999999976542 11110 11245677777775 68876 3355667777777664
No 243
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.07 E-value=0.00098 Score=59.57 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386 175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~ 228 (311)
+.+.++++...++|+|..|||+|.+++.++.+. ||.|.+|..+..||+ ..++.
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~-~e~~~ 224 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPD-LEEAL 224 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH--HHHHH
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcch-HHHHH
Confidence 445555555558999999999999999999987 999999999999998 44433
No 244
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.01 Score=54.48 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=96.6
Q ss_pred CCCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeE
Q psy2386 43 AEEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118 (311)
Q Consensus 43 ~~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvs 118 (311)
..+-||+|-+ +|+ |...++.++.+.++|+.+|.|-=-- .+|.+..--|-.+. +++...+=|++++++. +.++.
T Consensus 76 a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~-~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fv 152 (289)
T COG2513 76 AVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQV-GPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFV 152 (289)
T ss_pred hcCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecc-cchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeE
Confidence 4578999887 466 9999999999999999998884100 01111111233343 3444444445555544 56677
Q ss_pred EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC-
Q psy2386 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG- 194 (311)
Q Consensus 119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg- 194 (311)
+=-|..---....++.++-++...++|+|.|-.++.+ +.+.++++++++ ++|+.+| +|
T Consensus 153 i~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------------~~e~i~~f~~av-~~pl~~N~t~~g~ 214 (289)
T COG2513 153 IIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------------DLEEIRAFAEAV-PVPLPANITEFGK 214 (289)
T ss_pred EEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------------CHHHHHHHHHhc-CCCeeeEeeccCC
Confidence 7667532212224567899999999999999888775 568899999998 5777666 33
Q ss_pred --CCCHHHHHHHHhhcCEEEEehhh
Q psy2386 195 --IKTKKEIDLHLNYIDGVMLGREA 217 (311)
Q Consensus 195 --I~s~~da~~~l~~adgVmigRa~ 217 (311)
..|.++..++ ++..|..|-.+
T Consensus 215 tp~~~~~~L~~~--Gv~~V~~~~~~ 237 (289)
T COG2513 215 TPLLTVAELAEL--GVKRVSYGLTA 237 (289)
T ss_pred CCCcCHHHHHhc--CceEEEECcHH
Confidence 3444333222 27888777443
No 245
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.06 E-value=0.0045 Score=54.45 Aligned_cols=148 Identities=21% Similarity=0.294 Sum_probs=92.5
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
+.++|...|+..+.+..+.++++|+|. +|+-=|.=+|+. ++ =-++++++++.+++|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~---~~----------g~~~i~~i~~~~~~~~DvHLMv-- 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL---TF----------GPDIIKAIRKITDLPLDVHLMV-- 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB----B-----------HHHHHHHHTTSSSEEEEEEES--
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc---cC----------CHHHHHHHhhcCCCcEEEEeee--
Confidence 578899999999999999999999985 555444322221 12 2355777888888898886643
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCccc--------------------------------------------cccC
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAF--------------------------------------------LKKL 161 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~--------------------------------------------~~G~ 161 (311)
.+ ...+++.+.++|++.|++|..... ..|+
T Consensus 67 ~~------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~ 140 (201)
T PF00834_consen 67 EN------PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGF 140 (201)
T ss_dssp SS------GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTT
T ss_pred cc------HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCC
Confidence 22 135677788889998888843210 0133
Q ss_pred CCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386 162 NPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN 220 (311)
Q Consensus 162 ~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~ 220 (311)
+|.. .. +.-++-|+++++..+ ++.+..=|||+. +.+.++.+. +|.+.+|++++++
T Consensus 141 ~Gq~--f~-~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 141 GGQK--FI-PEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp SSB----H-GGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHHTS
T ss_pred Cccc--cc-HHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCC
Confidence 3321 11 113455665554332 488999999986 577777765 9999999998764
No 246
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.06 E-value=0.0039 Score=59.24 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhccc-------cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC
Q psy2386 100 LLVSDCIKAMRDSV-------EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 172 (311)
Q Consensus 100 ~~~~~iv~~v~~~~-------~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~ 172 (311)
+.-.+.++.+++.. ...+.|-..+|..++ ..+.++.|.++|+|.|+|..-. |++. -
T Consensus 73 e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-----~~er~~~L~~agvD~ivID~a~----g~s~--------~ 135 (352)
T PF00478_consen 73 EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-----DFERAEALVEAGVDVIVIDSAH----GHSE--------H 135 (352)
T ss_dssp HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-----HHHHHHHHHHTT-SEEEEE-SS----TTSH--------H
T ss_pred HHHHHHHhhhccccccccccccccceEEEEecCCHH-----HHHHHHHHHHcCCCEEEccccC----ccHH--------H
Confidence 33445555655431 234445555554432 2678899999999999996443 2210 1
Q ss_pred cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 173 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 173 ~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
-.+.++++++.+|++||| .|+|-|++.++.+++. ||+|-||=|
T Consensus 136 ~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 136 VIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence 246899999999889988 5779999999999987 999999844
No 247
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.05 E-value=0.013 Score=57.81 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178 (311)
Q Consensus 99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~ 178 (311)
++.+.++++..++ .+.-+.|-++. .+=++++.++|++.|-|..|.- ..+ ..|.+...
T Consensus 145 ~~~l~~l~~~a~~-lGl~~lvEvh~-----------~~El~~al~~~a~iiGiNnRdL--~t~---------~vd~~~~~ 201 (454)
T PRK09427 145 DEQYRQLAAVAHS-LNMGVLTEVSN-----------EEELERAIALGAKVIGINNRNL--RDL---------SIDLNRTR 201 (454)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEECC-----------HHHHHHHHhCCCCEEEEeCCCC--ccc---------eECHHHHH
Confidence 4555666655544 46655565542 1223445667888888888763 222 25778888
Q ss_pred HHHHhCC-CCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386 179 NLKKDFP-ELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 179 ~i~~~~~-~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
++...+| ++.+|+-+||.|++|+..+...+|||.||.++|..|..-..+++.+
T Consensus 202 ~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d~~~~~~~L~ 255 (454)
T PRK09427 202 ELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSSLMAEDDLELAVRKLI 255 (454)
T ss_pred HHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCCHHHHHHHHh
Confidence 8888776 4778999999999999997655999999999999999776666543
No 248
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.04 E-value=0.0066 Score=54.17 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=58.3
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
+....+.|+|+|.+.+=.. . + +. ..+|...+.++++++.+ ++||++-||| +++++.++++. +|||.+-++
T Consensus 124 a~~A~~~gaDYv~~Gpv~t--~--t-K~--~~~p~gl~~l~~~~~~~-~iPvvAIGGI-~~~n~~~~~~~GA~giAvisa 194 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGA--D--N-KP--EAHPRNLSLAEWWAEMI-EIPCIVQAGS-DLASAVEVAETGAEFVALERA 194 (221)
T ss_pred HHHhhhcCCCEEEECCCCC--C--C-CC--CCCCCChHHHHHHHHhC-CCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHH
Confidence 4446689999999854321 0 0 11 12345678888888887 7999999999 89999999987 999999999
Q ss_pred hhhCCcch
Q psy2386 217 AYKNPFLM 224 (311)
Q Consensus 217 ~l~~P~i~ 224 (311)
++..+...
T Consensus 195 i~~~~dp~ 202 (221)
T PRK06512 195 VFDAHDPP 202 (221)
T ss_pred hhCCCCHH
Confidence 98655543
No 249
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.02 E-value=0.0058 Score=57.89 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc-cccccCCCCcCCCCCcCcHHHH
Q psy2386 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt-~~~~G~~g~~~~~~~~~~~~~i 177 (311)
++...+.+..+++.+++||.++++.. + .++..++++.++++|+|+|.+|.-- ....+..|. ..+..-++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-~----~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~---~~~~~~~eil 157 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS-S----AGGWVDYARQIEQAGADALELNIYYLPTDPDISGA---EVEQRYLDIL 157 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC-C----HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccc---cHHHHHHHHH
Confidence 46666777777777789999999752 1 2256789999999999999996321 000111111 0111136788
Q ss_pred HHHHHhCCCCeEEEe--cCCCCHHHHHHHHhh--cCEEEEe
Q psy2386 178 YNLKKDFPELEIIIN--GGIKTKKEIDLHLNY--IDGVMLG 214 (311)
Q Consensus 178 ~~i~~~~~~ipvi~n--GgI~s~~da~~~l~~--adgVmig 214 (311)
+++++.+ ++||++. +++.+..++.+.++. +|+|.+.
T Consensus 158 ~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 158 RAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999887 7999976 566567777776654 9998773
No 250
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=97.01 E-value=0.012 Score=53.49 Aligned_cols=150 Identities=11% Similarity=0.159 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHhCCCcEEEec-ceec--ccccCCc-----hhcccc-----CCCCCC-eEEEec-C---CCHHHHHHHH
Q psy2386 3 LTDRHCRMFHRQITRYSWLYTE-MFTT--QAILGNK-----KHCLDF-----NAEEHP-IAFQVG-D---NEPKKLAKSA 64 (311)
Q Consensus 3 ~td~~fR~l~~~~g~~~l~~te-mv~a--~~l~~~~-----~~~l~~-----~~~~~p-~~~Ql~-g---~~~~~~~~aa 64 (311)
.=|..+=+++.+-| .+.++|- -+++ .+.- ++ +.++.. ...+.| +++=+- | ++|++..+.+
T Consensus 19 ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~p-Dt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 19 AYDYPTAKLADEAG-VDVILVGDSLGMVVLGYD-STLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred CCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCC-CCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHH
Confidence 34666777777777 3555553 1111 1211 11 122211 234567 666552 3 4687765554
Q ss_pred -HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE-------------eccCCCCCc
Q psy2386 65 -KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-------------RIGIDDINS 130 (311)
Q Consensus 65 -~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi-------------R~g~~~~~~ 130 (311)
+.++++|+++|.|--| ....+.|++++++ ++||.-=+ +..-..++.
T Consensus 97 ~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~ 156 (254)
T cd06557 97 ARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEE 156 (254)
T ss_pred HHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHH
Confidence 5566699999999522 3556666777654 78876211 110011122
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
.+++++-++.++++|++.|.+-+-. -+.++++.+.+ ++|+|+-|
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v~------------------~~~~~~i~~~v-~iP~igiG 200 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEec
Confidence 4567888999999999999875442 26789999998 79999877
No 251
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=96.98 E-value=0.017 Score=54.51 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH-----hCC--CCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 141 VSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK-----DFP--ELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 141 l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~-----~~~--~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+.+. |++.|-|..|. +..+ ..|.+...++.. .+| ++.+|+.+||.|++|+..+.+. +|+|
T Consensus 246 Al~~~ga~iIGINNRd--L~Tf---------~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 246 VLGIEGVELIGINNRS--LETF---------EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred HHhcCCCCEEEEeCCC--CCcc---------eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEE
Confidence 3444 78888777776 2222 257777777776 332 4668999999999999999977 9999
Q ss_pred EEehhhhhCCcchHHhHh
Q psy2386 212 MLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 212 migRa~l~~P~i~~~~~~ 229 (311)
.||.+++..|..-..+.+
T Consensus 315 LVGEsLMr~~dp~~~l~~ 332 (338)
T PLN02460 315 LVGESLVKQDDPGKGIAG 332 (338)
T ss_pred EECHHHhCCCCHHHHHHH
Confidence 999999999997666654
No 252
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=96.98 E-value=0.012 Score=56.35 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=100.2
Q ss_pred CCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386 46 HPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH 121 (311)
Q Consensus 46 ~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi 121 (311)
.+......+ ..++.+.++++.+.+.||+.+-+..||+... .-.+.++++|++++ +.+.+-.
T Consensus 131 v~~y~~~~~~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDa 195 (372)
T COG4948 131 VRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDA 195 (372)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeC
Confidence 334444443 3678888888888889999999999998653 34566778888774 5566665
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.-+|+.. +...+++.+++.++.++- + ..++-|.+..+++++.+ ++||.+.=-+.|..|+
T Consensus 196 n~~~~~~----~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~ 254 (372)
T COG4948 196 NGGWTLE----EAIRLARALEEYGLEWIE---------------E-PLPPDDLEGLRELRAAT-STPIAAGESVYTRWDF 254 (372)
T ss_pred CCCcCHH----HHHHHHHHhcccCcceEE---------------C-CCCccCHHHHHHHHhcC-CCCEecCcccccHHHH
Confidence 5566653 357899999999977761 1 12335788899999987 5999999999999999
Q ss_pred HHHHhh--cCEEEEe
Q psy2386 202 DLHLNY--IDGVMLG 214 (311)
Q Consensus 202 ~~~l~~--adgVmig 214 (311)
.++++. +|.|++-
T Consensus 255 ~~l~~~~a~div~~d 269 (372)
T COG4948 255 RRLLEAGAVDIVQPD 269 (372)
T ss_pred HHHHHcCCCCeecCC
Confidence 999986 9988873
No 253
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.95 E-value=0.023 Score=55.50 Aligned_cols=125 Identities=11% Similarity=0.045 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSY 131 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~ 131 (311)
+.+++++.+-|+...+.||..+-+..| .+++.-.+.++++|+.++ +.+.|-..-+|+.
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~---- 253 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDV---- 253 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----
Confidence 567888877777777789999998654 245555678888998874 4455554445554
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHhh--
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY-- 207 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~--~ipvi~nGgI~s~~da~~~l~~-- 207 (311)
++..++++.+++.++.++- + ..++-|++..+++++..+ ++||.+.-.+.|..++.++++.
T Consensus 254 ~~A~~~~~~L~~~~l~~iE---------------E-P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a 317 (415)
T cd03324 254 PEAIEWVKQLAEFKPWWIE---------------E-PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGA 317 (415)
T ss_pred HHHHHHHHHhhccCCCEEE---------------C-CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCC
Confidence 3578999999999988772 1 122357888889988762 4898887789999999999975
Q ss_pred cCEEEEe
Q psy2386 208 IDGVMLG 214 (311)
Q Consensus 208 adgVmig 214 (311)
+|.+++=
T Consensus 318 ~dil~~d 324 (415)
T cd03324 318 IDVVQID 324 (415)
T ss_pred CCEEEeC
Confidence 8988864
No 254
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.92 E-value=0.013 Score=53.48 Aligned_cols=99 Identities=14% Similarity=0.294 Sum_probs=67.1
Q ss_pred CHHHHHH-HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE-------EEEec--cC
Q psy2386 56 EPKKLAK-SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT-------VKHRI--GI 125 (311)
Q Consensus 56 ~~~~~~~-aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs-------vKiR~--g~ 125 (311)
++++..+ |.+++++.|+++|.|--| ..+.+.++++.+ .++||. ...|. |+
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy 149 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEGG-------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGY 149 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCe
Confidence 4766544 445667799999999622 334455666665 378887 33332 22
Q ss_pred C----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 126 D----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 126 ~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
. ..+..+.+++-++.++++|++.|.+-+-. -+.+++|.+.+ ++|+|+-|
T Consensus 150 ~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~l-~iP~iGIG 202 (263)
T TIGR00222 150 KVQGKDEEAAKKLLEDALALEEAGAQLLVLECVP------------------VELAAKITEAL-AIPVIGIG 202 (263)
T ss_pred eecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence 1 11223467888999999999999875442 37889999998 79998876
No 255
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.89 E-value=0.0089 Score=56.47 Aligned_cols=94 Identities=14% Similarity=0.319 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178 (311)
Q Consensus 99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~ 178 (311)
++...+.++.+++...+.+. ++... +..+.++.+.++|++.|.+.... |.+ ..-++.++
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~----~~~~~-----~~~~~~~~l~eagv~~I~vd~~~----G~~--------~~~~~~i~ 127 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAA----VGTRE-----DDKERAEALVEAGVDVIVIDSAH----GHS--------VYVIEMIK 127 (325)
T ss_pred HHHHHHHHHHhccCceEEEe----cCCCh-----hHHHHHHHHHhcCCCEEEEECCC----CCc--------HHHHHHHH
Confidence 35556666676654333222 33221 24678888999999999886432 110 01257899
Q ss_pred HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
++++..|++||++ |++.|++++.++++. ||+|.+|
T Consensus 128 ~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 128 FIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 9999876788887 999999999999987 9999984
No 256
>PRK14017 galactonate dehydratase; Provisional
Probab=96.89 E-value=0.026 Score=54.38 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=103.3
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH 121 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi 121 (311)
+..|+-..+++.+|+++.+.++...+.||..+-+..|=+.+. . + -..+++.-.+.++++|+.++ +.+.|-.
T Consensus 112 ~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~--~---~--~~~~~~~d~~~i~avr~~~g~~~~l~vDa 184 (382)
T PRK14017 112 DRIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQY--I---D--SPRKVDAAVARVAAVREAVGPEIGIGVDF 184 (382)
T ss_pred ceeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCccc--c---c--cHHHHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 344666666677999988777777778999999975311100 0 0 01235666788889998873 5566655
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.-+|+. ++..++++.+++.|+.+|- + ..++-|++..+++++.. .+||.+.=.+.|+.++
T Consensus 185 N~~w~~----~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~L~~~~-~~pIa~dEs~~~~~~~ 243 (382)
T PRK14017 185 HGRVHK----PMAKVLAKELEPYRPMFIE---------------E-PVLPENAEALPEIAAQT-SIPIATGERLFSRWDF 243 (382)
T ss_pred CCCCCH----HHHHHHHHhhcccCCCeEE---------------C-CCCcCCHHHHHHHHhcC-CCCEEeCCccCCHHHH
Confidence 555654 3568899999998888772 1 12234788899999987 7999988889999999
Q ss_pred HHHHhh--cCEEEEehhhhh
Q psy2386 202 DLHLNY--IDGVMLGREAYK 219 (311)
Q Consensus 202 ~~~l~~--adgVmigRa~l~ 219 (311)
.++++. +|.|.+--.-.+
T Consensus 244 ~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 244 KRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred HHHHHcCCCCeEecCccccC
Confidence 999975 888887543333
No 257
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.87 E-value=0.0051 Score=54.44 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|+++|++..-.....| ..+.++.+++.+ ++||+.-|.|.+.+++..+++. ||+|
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g------------~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQG------------SLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCC------------CHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEE
Confidence 4689999999999999998755432222 557788888877 8999998999999999999887 9999
Q ss_pred EEehhhhhCCcchHHhH
Q psy2386 212 MLGREAYKNPFLMSNFD 228 (311)
Q Consensus 212 migRa~l~~P~i~~~~~ 228 (311)
.++-..+.. ..+.++.
T Consensus 99 ~l~~~~~~~-~~~~~~~ 114 (217)
T cd00331 99 LLIVAALDD-EQLKELY 114 (217)
T ss_pred EEeeccCCH-HHHHHHH
Confidence 998776643 3334443
No 258
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.86 E-value=0.1 Score=46.79 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=94.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cC--CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK 120 (311)
..++.++|...|+..+.+-.+.++++|+|.+-+- =| +|+- .+| |+ +++++++ +.|+.|=
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tfG------p~----~i~~i~~--~~~~DvH 74 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF-----TVG------AI----AIKQFPT--HCFKDVH 74 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc-----ccC------HH----HHHHhCC--CCCEEEE
Confidence 3578899999999999999999999998875553 23 3432 122 33 3455543 5565554
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC----------------------------ccc---------------
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR----------------------------NAF--------------- 157 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R----------------------------t~~--------------- 157 (311)
+=+ .+ ..++++.+.++|++.|++|.- |..
T Consensus 75 LMv--~~------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 75 LMV--RD------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQI 146 (228)
T ss_pred ecc--CC------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEE
Confidence 332 11 246777778888888887732 100
Q ss_pred ---cccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386 158 ---LKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 158 ---~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i 223 (311)
..|+.|.. .. +.-++-|+++++.. .++.|-.=|||+ .+.+.++.+. ||.+.+|+++++++..
T Consensus 147 MtV~PGfgGQ~--f~-~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d~ 216 (228)
T PRK08091 147 LTLDPRTGTKA--PS-DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFSQGEL 216 (228)
T ss_pred EEECCCCCCcc--cc-HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhCCCCH
Confidence 01333321 11 11245566555432 145678889998 6788888876 9999999999877663
No 259
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.85 E-value=0.013 Score=51.79 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.+-+..+++.|+|+|.+-+-..+. + |+. . ++.-|+.+..+++.. .+|+++-|||. ++.+.+.++. +|||.+
T Consensus 114 ~eea~~A~~~g~DYv~~GpifpT~---t-K~~-~-~~~G~~~l~~~~~~~-~iP~vAIGGi~-~~nv~~v~~~Ga~gVAv 185 (211)
T COG0352 114 LEEALEAEELGADYVGLGPIFPTS---T-KPD-A-PPLGLEGLREIRELV-NIPVVAIGGIN-LENVPEVLEAGADGVAV 185 (211)
T ss_pred HHHHHHHHhcCCCEEEECCcCCCC---C-CCC-C-CccCHHHHHHHHHhC-CCCEEEEcCCC-HHHHHHHHHhCCCeEEe
Confidence 355777888999999875432210 0 111 2 567899999999887 69999999996 6889999987 999999
Q ss_pred ehhhhhCCcchHHhH
Q psy2386 214 GREAYKNPFLMSNFD 228 (311)
Q Consensus 214 gRa~l~~P~i~~~~~ 228 (311)
-|+++..+..-....
T Consensus 186 vsai~~a~d~~~a~~ 200 (211)
T COG0352 186 VSAITSAADPAAAAK 200 (211)
T ss_pred hhHhhcCCCHHHHHH
Confidence 999988776554443
No 260
>PRK06852 aldolase; Validated
Probab=96.81 E-value=0.046 Score=51.01 Aligned_cols=155 Identities=11% Similarity=0.103 Sum_probs=91.5
Q ss_pred CCCeEEEecCC---------CHHH-HHHHHHHHHHcC------CCE--EEeccCCCccccccCcccCcccCChHHHHHHH
Q psy2386 45 EHPIAFQVGDN---------EPKK-LAKSAKIIQKWG------YDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106 (311)
Q Consensus 45 ~~p~~~Ql~g~---------~~~~-~~~aa~~~~~~g------~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv 106 (311)
+.|+|+.|.++ +|.. +....+.+.++| +|+ +-+|.|..... +..+.+.+|+
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~-----------~ml~~l~~v~ 160 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYES-----------EMLSEAAQII 160 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHH-----------HHHHHHHHHH
Confidence 67899999875 3422 222234455566 665 45566633221 1234556666
Q ss_pred HHHhccccceeEEEE-eccC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386 107 KAMRDSVEIDITVKH-RIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 183 (311)
Q Consensus 107 ~~v~~~~~~pvsvKi-R~g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~ 183 (311)
++..+ .++|+.+=+ -.|. .+....+.+...++...+.|+|.|.+---+. .+ .-+-+..+++.+.
T Consensus 161 ~ea~~-~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~--~~----------~g~~e~f~~vv~~ 227 (304)
T PRK06852 161 YEAHK-HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKK--EG----------ANPAELFKEAVLA 227 (304)
T ss_pred HHHHH-hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCc--CC----------CCCHHHHHHHHHh
Confidence 66555 489976521 1132 2222233456667888899999997642211 00 0244667777777
Q ss_pred CCCCeEEEecCCC-CHHHHHHHH----h-h-cCEEEEehhhhhCCcc
Q psy2386 184 FPELEIIINGGIK-TKKEIDLHL----N-Y-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 184 ~~~ipvi~nGgI~-s~~da~~~l----~-~-adgVmigRa~l~~P~i 223 (311)
+..+||+..||=. +.+++.++. + . +.||.+||=.+..|.-
T Consensus 228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD 274 (304)
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence 6248988888766 445555544 3 3 8999999999888653
No 261
>PRK08185 hypothetical protein; Provisional
Probab=96.81 E-value=0.082 Score=48.93 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=89.8
Q ss_pred CCCCeEEEecCCC----HHHHHHHHH-HHHHcCCCEEEecc-CCCcc----ccccCcccCcc--------cCChHHHHHH
Q psy2386 44 EEHPIAFQVGDNE----PKKLAKSAK-IIQKWGYDEINLNC-GCPSN----RVQNGFFGAIL--------MTKPLLVSDC 105 (311)
Q Consensus 44 ~~~p~~~Ql~g~~----~~~~~~aa~-~~~~~g~d~IdiN~-gCP~~----~v~~~~~G~~L--------l~~~~~~~~i 105 (311)
...|+|+|+.-.. +..+...++ .++++.+. |-||+ .|... ...+.|+.|-+ .++-++..++
T Consensus 36 ~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP-V~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~v 114 (283)
T PRK08185 36 NNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP-FVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEV 114 (283)
T ss_pred hCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 3578888885322 223555554 33444443 33443 12211 11133332322 2344555566
Q ss_pred HHHHhccccceeEEEEe-ccCCCCC-----c---HHHHHHHHHHHHHcCCCEEEE-----ecCccccccCCCCcCCCCCc
Q psy2386 106 IKAMRDSVEIDITVKHR-IGIDDIN-----S---YDFVRDFVGTVSSAGCRTFIV-----HARNAFLKKLNPKQNRKIPI 171 (311)
Q Consensus 106 v~~v~~~~~~pvsvKiR-~g~~~~~-----~---~~~~~e~~~~l~~~G~~~itv-----h~Rt~~~~G~~g~~~~~~~~ 171 (311)
++-++. .+++|-..+- +|..++. + +.+..+..+.+++.|+|++.+ ||-.. + ...+.
T Consensus 115 v~~a~~-~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~---~------~~kp~ 184 (283)
T PRK08185 115 VELAHK-VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP---K------DKKPE 184 (283)
T ss_pred HHHHHH-cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC---C------CCCCC
Confidence 655544 3777766552 2221100 0 112334444456679999998 66532 1 01244
Q ss_pred CcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386 172 LKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~ 217 (311)
.+++.++++++.+ ++|++.-||+..+ ++++++... +.-|=|++.+
T Consensus 185 L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l 231 (283)
T PRK08185 185 LQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDM 231 (283)
T ss_pred cCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 7899999999998 8999999999665 455666655 7778888776
No 262
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.80 E-value=0.026 Score=53.88 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~ 133 (311)
+++++.+-++...+.||..+-+-.| .+++.-.+.++++|+.++ +.+.|-..-+|+. ++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~----~~ 197 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYSR----KQ 197 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HH
Confidence 6787877777677789999998643 124556677888888874 5566655555654 35
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh--CCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD--FPELEIIINGGIKTKKEIDLHLNY--ID 209 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~--~~~ipvi~nGgI~s~~da~~~l~~--ad 209 (311)
..++++.+++.++.++ ++ ..++-|++..+++++. . ++||.+.=.+.|..|+.++++. +|
T Consensus 198 A~~~~~~l~~~~~~~~---------------Ee-P~~~~d~~~~~~l~~~~~~-~iPIa~gE~~~~~~~~~~li~~~a~d 260 (352)
T cd03328 198 ALALARAFADEGVTWF---------------EE-PVSSDDLAGLRLVRERGPA-GMDIAAGEYAYTLAYFRRLLEAHAVD 260 (352)
T ss_pred HHHHHHHHHHhCcchh---------------hC-CCChhhHHHHHHHHhhCCC-CCCEEecccccCHHHHHHHHHcCCCC
Confidence 7899999999888766 11 1233478889999998 6 6999987789999999999975 99
Q ss_pred EEEEehh
Q psy2386 210 GVMLGRE 216 (311)
Q Consensus 210 gVmigRa 216 (311)
.|++==.
T Consensus 261 iv~~d~~ 267 (352)
T cd03328 261 VLQADVT 267 (352)
T ss_pred EEecCcc
Confidence 8887533
No 263
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.77 E-value=0.0056 Score=61.06 Aligned_cols=68 Identities=21% Similarity=0.430 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..+.++.+.++|++.|.+..- +|.+ ...|+.|+++++.+|++||++ |+|.|+++++.+.+. ||+|.
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a----~G~s--------~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSS----QGNS--------IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecC----CCCc--------hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 368899999999999998542 1211 124789999999987888887 999999999999987 99998
Q ss_pred Ee
Q psy2386 213 LG 214 (311)
Q Consensus 213 ig 214 (311)
+|
T Consensus 309 vg 310 (495)
T PTZ00314 309 IG 310 (495)
T ss_pred EC
Confidence 65
No 264
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=96.75 E-value=0.12 Score=47.74 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=97.9
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.+...|+++++++.+.++..+-++.+++.|+|+|-+-. |... .-+.+-+.+-.+.+.+++++|+.+=-
T Consensus 67 ~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~----------~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 67 AAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYYF----------KPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp HTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STSS----------SCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred ccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--cccc----------cchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 45578999999999999999999999999999999853 4321 13466677888888888899998865
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKK 199 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~ 199 (311)
.......+- ..+.+.++.+.+ +-++...+ .|+..+.++.... +++. +.+| +-+
T Consensus 135 ~P~~tg~~l---s~~~l~~L~~~~nv~giK~s~------------------~~~~~~~~~~~~~~~~~~-v~~G---~d~ 189 (289)
T PF00701_consen 135 NPARTGNDL---SPETLARLAKIPNVVGIKDSS------------------GDLERLIQLLRAVGPDFS-VFCG---DDE 189 (289)
T ss_dssp BHHHHSSTS---HHHHHHHHHTSTTEEEEEESS------------------SBHHHHHHHHHHSSTTSE-EEES---SGG
T ss_pred CCCccccCC---CHHHHHHHhcCCcEEEEEcCc------------------hhHHHHHHHhhhcccCee-eecc---ccc
Confidence 442222111 245566666632 22332211 2555555655554 2343 5566 222
Q ss_pred HHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386 200 EIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY 232 (311)
Q Consensus 200 da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~ 232 (311)
.+...+. +++|++.|-+.+ -|.++.++.+.+.
T Consensus 190 ~~~~~l~~G~~G~is~~~n~-~P~~~~~i~~~~~ 222 (289)
T PF00701_consen 190 LLLPALAAGADGFISGLANV-FPELIVEIYDAFQ 222 (289)
T ss_dssp GHHHHHHTTSSEEEESGGGT-HHHHHHHHHHHHH
T ss_pred cccccccccCCEEEEccccc-ChHHHHHHHHHHH
Confidence 2344444 499999998776 4777777766554
No 265
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.73 E-value=0.02 Score=53.77 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=74.2
Q ss_pred CCCCCeEE-Ee----cCCCHHHHHHHHH-HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386 43 AEEHPIAF-QV----GDNEPKKLAKSAK-IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116 (311)
Q Consensus 43 ~~~~p~~~-Ql----~g~~~~~~~~aa~-~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p 116 (311)
....|+++ -+ ++.+|++..+.|. ++++.|+++|.|--|. ....++++++.+ .++|
T Consensus 93 ga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~~-~GIP 153 (332)
T PLN02424 93 GANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIVE-AGIA 153 (332)
T ss_pred cCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHHH-cCCC
Confidence 34566655 22 2357777666565 4578999999996332 223466666663 4899
Q ss_pred eEEEEec---------cCC----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386 117 ITVKHRI---------GID----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 183 (311)
Q Consensus 117 vsvKiR~---------g~~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~ 183 (311)
|.-=+-+ |+. ..+..+.+++-++.++++|+..|.+-+-. -+.+++|.+.
T Consensus 154 V~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp------------------~~la~~It~~ 215 (332)
T PLN02424 154 VMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVP------------------APVAAAITSA 215 (332)
T ss_pred EEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc------------------HHHHHHHHHh
Confidence 8732211 111 11223467788999999999999886553 2478899999
Q ss_pred CCCCeEEEec
Q psy2386 184 FPELEIIING 193 (311)
Q Consensus 184 ~~~ipvi~nG 193 (311)
+ +||+|+-|
T Consensus 216 l-~IPtIGIG 224 (332)
T PLN02424 216 L-QIPTIGIG 224 (332)
T ss_pred C-CCCEEeec
Confidence 8 79999876
No 266
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.71 E-value=0.023 Score=50.35 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=59.4
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
+..+++.|+|++.+.+-..+.. ++ .+.++..|+.+.++.+...++||++-|||. ++++.++++. ++||.+-++
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~t----K~-~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisa 188 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQT----KQ-MPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSA 188 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCC----CC-CCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhH
Confidence 5666788999999865432100 11 123446788888887763369999999998 7889888876 999999999
Q ss_pred hhhCCcchH
Q psy2386 217 AYKNPFLMS 225 (311)
Q Consensus 217 ~l~~P~i~~ 225 (311)
++..+..-.
T Consensus 189 i~~~~d~~~ 197 (211)
T PRK03512 189 ITQAADWRA 197 (211)
T ss_pred hhCCCCHHH
Confidence 986665443
No 267
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=96.71 E-value=0.042 Score=52.57 Aligned_cols=128 Identities=9% Similarity=0.045 Sum_probs=93.2
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEe
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHR 122 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR 122 (311)
..|+-....+.+++.+.+.++...+.||..+-+.. .+.++++|+.++ +.+.|...
T Consensus 115 ~v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN 171 (361)
T cd03322 115 GIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVH 171 (361)
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECC
Confidence 34444445567788887777766678999988742 466888888773 55666655
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
-+|+. ++..++++.+++.++.++- + ..++-|++..+++++.. .+||.+.=.+.|+.++.
T Consensus 172 ~~w~~----~~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~L~~~~-~~pia~gE~~~~~~~~~ 230 (361)
T cd03322 172 HRLTP----NQAARFGKDVEPYRLFWME---------------D-PTPAENQEAFRLIRQHT-ATPLAVGEVFNSIWDWQ 230 (361)
T ss_pred CCCCH----HHHHHHHHHhhhcCCCEEE---------------C-CCCcccHHHHHHHHhcC-CCCEEeccCCcCHHHHH
Confidence 55654 3568899999998888772 1 12234788899999987 69988877889999999
Q ss_pred HHHhh--cCEEEEehh
Q psy2386 203 LHLNY--IDGVMLGRE 216 (311)
Q Consensus 203 ~~l~~--adgVmigRa 216 (311)
+++.. +|.+++-=.
T Consensus 231 ~~i~~~a~di~~~d~~ 246 (361)
T cd03322 231 NLIQERLIDYIRTTVS 246 (361)
T ss_pred HHHHhCCCCEEecCcc
Confidence 99975 888877533
No 268
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.69 E-value=0.0091 Score=51.36 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=53.3
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
++.+.+.|+|++.+.+-.... | ++. + ++..|+.+.++++.. ++||++-||| +++++.++.+. ++||.+-|+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~---s-k~~-~-~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTS---S-KPG-A-PPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISA 179 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--S---S-SSS---TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHH
T ss_pred HHHhhhcCCCEEEECCccCCC---C-Ccc-c-cccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEee
Confidence 777889999999987643211 0 111 1 557899999999998 6999999999 68999998876 999999887
Q ss_pred h
Q psy2386 217 A 217 (311)
Q Consensus 217 ~ 217 (311)
+
T Consensus 180 I 180 (180)
T PF02581_consen 180 I 180 (180)
T ss_dssp H
T ss_pred C
Confidence 4
No 269
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.68 E-value=0.049 Score=52.68 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
.+++++.+.++...+.||..+-|..|- .+++.-.+.++++|+.+ ++.+.|-..-+|+. +
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~----~ 219 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDL----E 219 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----H
Confidence 367778777776777899999996541 23455567788888877 45666666656654 2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--c--
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I-- 208 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--a-- 208 (311)
+..++++.+++.++.+|- + ..++-|++..+++++.. ++||.+.=.+.++.++.++++. |
T Consensus 220 ~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~a~~~ 282 (385)
T cd03326 220 TAIAYAKALAPYGLRWYE---------------E-PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYGGMRP 282 (385)
T ss_pred HHHHHHHHhhCcCCCEEE---------------C-CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhCCccc
Confidence 568899999998888772 1 12335889999999988 7999998899999999999976 5
Q ss_pred --CEEEEe
Q psy2386 209 --DGVMLG 214 (311)
Q Consensus 209 --dgVmig 214 (311)
|.|++=
T Consensus 283 ~~div~~d 290 (385)
T cd03326 283 DRDVLQFD 290 (385)
T ss_pred cCCEEEeC
Confidence 888774
No 270
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=96.64 E-value=0.14 Score=47.68 Aligned_cols=156 Identities=14% Similarity=0.111 Sum_probs=96.9
Q ss_pred CCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCC-CccccccCcccCcccCChHHHHHHHHHHhcc-ccceeE
Q psy2386 44 EEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDIT 118 (311)
Q Consensus 44 ~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvs 118 (311)
.+.||++=+ +|+.+ ...+.++.+.++|+.+|.|-=.. |..+--- ..|..-+-+++...+-+++++++ .+.++.
T Consensus 74 ~~lPv~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~-~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~ 151 (290)
T TIGR02321 74 VSIPLIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLR-TDGRQELVRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_pred cCCCEEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccc-cCCCccccCHHHHHHHHHHHHHhCCCCCEE
Confidence 367888877 36666 58999999999999999997543 2211000 01212234555555555555544 355677
Q ss_pred EEEeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEec---
Q psy2386 119 VKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIING--- 193 (311)
Q Consensus 119 vKiR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nG--- 193 (311)
+=-|+.-- .....++.++-++...++|+|.|-+++.. .+-+.+.++.+.++ .+||..+.
T Consensus 152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~----------------~~~~ei~~~~~~~~~p~pv~~~~~~~ 215 (290)
T TIGR02321 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----------------KTPDEILAFVKSWPGKVPLVLVPTAY 215 (290)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------------CCHHHHHHHHHhcCCCCCeEEecCCC
Confidence 77776421 12234567888999999999999998742 14577888888873 26776543
Q ss_pred CCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386 194 GIKTKKEIDLHLNYIDGVMLGREAY 218 (311)
Q Consensus 194 gI~s~~da~~~l~~adgVmigRa~l 218 (311)
...|.++..++= ....|..|..++
T Consensus 216 p~~~~~~l~~lg-~~~~v~~g~~~~ 239 (290)
T TIGR02321 216 PQLTEADIAALS-KVGIVIYGNHAI 239 (290)
T ss_pred CCCCHHHHHHhc-CCcEEEEChHHH
Confidence 344555554431 145577774443
No 271
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=96.61 E-value=0.094 Score=50.26 Aligned_cols=135 Identities=12% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 45 EHPIAFQVGDNEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
..|+-..+...+++.. .++.+...+.||..+-+-.| . .+++.-.+.++++++.++- .+++++
T Consensus 130 ~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~--~~~l~~ 192 (368)
T TIGR02534 130 SVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGD--RASVRV 192 (368)
T ss_pred ceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCC--CcEEEE
Confidence 4455555555565544 44444445679999988543 1 2455556777888887643 234444
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
.....-+.++..++++.+++.++.+|- + ..++-|++..+++++.. .+||.+.-.+.++.|+.+
T Consensus 193 DaN~~~~~~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~~ 255 (368)
T TIGR02534 193 DVNAAWDERTALHYLPQLADAGVELIE---------------Q-PTPAENREALARLTRRF-NVPIMADESVTGPADALA 255 (368)
T ss_pred ECCCCCCHHHHHHHHHHHHhcChhheE---------------C-CCCcccHHHHHHHHHhC-CCCEEeCcccCCHHHHHH
Confidence 222222234578899999998877661 1 11234788888999987 799999888999999999
Q ss_pred HHhh--cCEEEE
Q psy2386 204 HLNY--IDGVML 213 (311)
Q Consensus 204 ~l~~--adgVmi 213 (311)
+++. +|.|.+
T Consensus 256 ~~~~~~~d~~~~ 267 (368)
T TIGR02534 256 IAKASAADVFAL 267 (368)
T ss_pred HHHhCCCCEEEE
Confidence 9975 899887
No 272
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.58 E-value=0.11 Score=48.12 Aligned_cols=113 Identities=14% Similarity=0.255 Sum_probs=74.1
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-c-cCCCC-----CcHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCCcCC
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-I-GIDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNR 167 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~-g~~~~-----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~ 167 (311)
.+|-+...++++..+. .+++|-.-+- + |..+. ..+-+..+..+.+++.|+|.+.+.=.|. .| |.
T Consensus 111 eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~--HG~Y~----- 182 (283)
T PRK07998 111 EENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV--HGLED----- 182 (283)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc--ccCCC-----
Confidence 3566777777777665 4777644432 2 21111 0011334555666889999998654442 12 11
Q ss_pred CCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhhh
Q psy2386 168 KIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 168 ~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~l 218 (311)
.|..|++.+++|++.+ ++|++.-||=..+ +++++.+.. +..|=|++.+.
T Consensus 183 -~p~l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 183 -IPRIDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred -CCCcCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence 1347999999999998 7999999987766 566777766 99999998873
No 273
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.57 E-value=0.42 Score=44.48 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC--CCCHHHHHHHHhh-cCEEE
Q psy2386 137 FVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG--IKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 137 ~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg--I~s~~da~~~l~~-adgVm 212 (311)
-+..+.+.|+|+|.+.=.+. .| |.+ ..++.+++.++++++.++++|+++-|| |. .+++.++++. ++.|-
T Consensus 158 ea~~f~~tgvD~LAv~iG~v--HG~y~t----~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiN 230 (293)
T PRK07315 158 DAKAMVETGIDFLAAGIGNI--HGPYPE----NWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAIKLGVAKVN 230 (293)
T ss_pred HHHHHHHcCCCEEeeccccc--cccCCC----CCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 34455588999997642211 11 110 123589999999999984499999998 75 4778888876 99999
Q ss_pred EehhhhhCC
Q psy2386 213 LGREAYKNP 221 (311)
Q Consensus 213 igRa~l~~P 221 (311)
|++.+..++
T Consensus 231 v~T~i~~~~ 239 (293)
T PRK07315 231 VNTECQIAF 239 (293)
T ss_pred EccHHHHHH
Confidence 999998733
No 274
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.55 E-value=0.049 Score=49.61 Aligned_cols=88 Identities=16% Similarity=0.079 Sum_probs=56.6
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCCCcHHHHHHHH-HH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDFV-GT 140 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~~~~~~~~e~~-~~ 140 (311)
.|++++++|||.|= .|-....+. -|+-....-..+.+...+++|++.++.| |++-+-.|... ++.++..+.+ +.
T Consensus 24 sA~l~e~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~-~~~~~av~~a~r~ 99 (254)
T cd06557 24 TAKLADEAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQ-TSPEQALRNAARL 99 (254)
T ss_pred HHHHHHHcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCccc-CCHHHHHHHHHHH
Confidence 46788899999994 454433322 2344445556788888888998888889 77666323221 2233444554 44
Q ss_pred HHHcCCCEEEEecC
Q psy2386 141 VSSAGCRTFIVHAR 154 (311)
Q Consensus 141 l~~~G~~~itvh~R 154 (311)
++++|+++|.+-+.
T Consensus 100 ~~~aGa~aVkiEd~ 113 (254)
T cd06557 100 MKEAGADAVKLEGG 113 (254)
T ss_pred HHHhCCeEEEEcCc
Confidence 55599999998765
No 275
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.53 E-value=0.19 Score=42.92 Aligned_cols=133 Identities=12% Similarity=-0.011 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
|.+.+.+.++.+.+.|+++|.++. +.+..+.+.+... ++|+.+++..+... ...++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~-~~~~~~~ 68 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGL-TTTEVKV 68 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCC-CcHHHHH
Confidence 889999999999999999999983 3333333333221 47888887654311 1123578
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEE-e-cCCC-CHHHHHHHH---hh-
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIII-N-GGIK-TKKEIDLHL---NY- 207 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~-n-GgI~-s~~da~~~l---~~- 207 (311)
+.++.+.+.|+|++.++.-.. ...++. ...-.++++++++.+ .++||+. | -+-. +++...++. ..
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~--~~~~~~-----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIG--SLKEGD-----WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA 141 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHH--HHhCCC-----HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999874321 111100 011256777888773 2688763 3 2223 677766652 22
Q ss_pred -cCEEEEehhh
Q psy2386 208 -IDGVMLGREA 217 (311)
Q Consensus 208 -adgVmigRa~ 217 (311)
+|+|=...+.
T Consensus 142 g~~~iK~~~~~ 152 (201)
T cd00945 142 GADFIKTSTGF 152 (201)
T ss_pred CCCEEEeCCCC
Confidence 8888776553
No 276
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.50 E-value=0.039 Score=50.81 Aligned_cols=91 Identities=13% Similarity=0.243 Sum_probs=61.5
Q ss_pred HHHHHHHHhcccc--ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH
Q psy2386 102 VSDCIKAMRDSVE--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179 (311)
Q Consensus 102 ~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~ 179 (311)
+.+.++.+|+... .++.|-++. .+-+..+.++|+|.|-+.. .+.+.+++
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~t-----------leea~~A~~~GaDiI~LDn------------------~~~e~l~~ 218 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECES-----------LEEAKNAMNAGADIVMCDN------------------MSVEEIKE 218 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCC-----------HHHHHHHHHcCCCEEEECC------------------CCHHHHHH
Confidence 4566666666543 344443321 3446666789999887532 24455555
Q ss_pred HHHh----CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 180 LKKD----FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 180 i~~~----~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
+.+. .|++.+.++||| +++.+.++.+. +|.|.+|.....-|+
T Consensus 219 ~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 219 VVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATW 265 (273)
T ss_pred HHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCc
Confidence 5443 246789999999 99999999987 999999987764444
No 277
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.48 E-value=0.066 Score=50.87 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=95.3
Q ss_pred CCCCeEEEec--C---C----CHH-HHHHHHHHHHHcCCCEEEeccCC-Cc-cccccCcccCcccCChHHHHHHHHHHhc
Q psy2386 44 EEHPIAFQVG--D---N----EPK-KLAKSAKIIQKWGYDEINLNCGC-PS-NRVQNGFFGAILMTKPLLVSDCIKAMRD 111 (311)
Q Consensus 44 ~~~p~~~Ql~--g---~----~~~-~~~~aa~~~~~~g~d~IdiN~gC-P~-~~v~~~~~G~~Ll~~~~~~~~iv~~v~~ 111 (311)
.+.++++.+- | + -++ .....++.+.+.|+|+|-+++-. |- +...+ ....+.+.++.+++++
T Consensus 82 ~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~-------~~~~~~l~rv~~ec~~ 154 (340)
T PRK12858 82 PNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAIN-------DRKHAFVERVGAECRA 154 (340)
T ss_pred CCCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHH-------HHHHHHHHHHHHHHHH
Confidence 4566888774 3 1 122 23334677888999988775321 11 10000 0123456777777666
Q ss_pred cccceeEEEE--e-ccCC--CC-----CcHHHHHHHHHHHHH--cCCCEEEEecCcc--ccccCCCCcCCCCCcCcHHHH
Q psy2386 112 SVEIDITVKH--R-IGID--DI-----NSYDFVRDFVGTVSS--AGCRTFIVHARNA--FLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 112 ~~~~pvsvKi--R-~g~~--~~-----~~~~~~~e~~~~l~~--~G~~~itvh~Rt~--~~~G~~g~~~~~~~~~~~~~i 177 (311)
.++|+.+=+ . .+.. +. ...+.+...++.+.+ .|+|.+-+---.. .-.|+...+.-|....-.+..
T Consensus 155 -~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f 233 (340)
T PRK12858 155 -NDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLF 233 (340)
T ss_pred -cCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHH
Confidence 389987742 1 1111 11 112346677788884 9999997742110 012332212222221122556
Q ss_pred HHHHHhCCCCeEE-EecCCCCHHHHHHHHhh-----c--CEEEEehhhhhCCc
Q psy2386 178 YNLKKDFPELEII-INGGIKTKKEIDLHLNY-----I--DGVMLGREAYKNPF 222 (311)
Q Consensus 178 ~~i~~~~~~ipvi-~nGgI~s~~da~~~l~~-----a--dgVmigRa~l~~P~ 222 (311)
+++.+.. .+|++ .+||+ |.++..+.++. + .||.+||....++-
T Consensus 234 ~~~~~a~-~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 234 REQSDAT-DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHhhC-CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhh
Confidence 7777776 68865 47887 77888877752 7 89999999977664
No 278
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.47 E-value=0.074 Score=50.47 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=98.2
Q ss_pred CCCeEEEe-cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386 45 EHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH 121 (311)
Q Consensus 45 ~~p~~~Ql-~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi 121 (311)
..|+-... +..+++.+.+.++.+.+.||..+-+..|.. +. . --.+++.-.+.++++|+.++ +.+.+-.
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~-~~---~-----~~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYG-PS---D-----GHAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-CC---c-----chHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 34554443 346888888777777788999999976531 00 0 01234666788888888873 4555555
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.-+|+. ++...+++.+++.++.++- + ..++-|++..+++++.. ++||.+.=.+.+..++
T Consensus 179 n~~~~~----~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pIa~gE~~~~~~~~ 237 (341)
T cd03327 179 YMSWNL----NYAIKMARALEKYELRWIE---------------E-PLIPDDIEGYAELKKAT-GIPISTGEHEYTVYGF 237 (341)
T ss_pred CCCCCH----HHHHHHHHHhhhcCCcccc---------------C-CCCccCHHHHHHHHhcC-CCCeEeccCccCHHHH
Confidence 545553 3567899999998877661 1 12335788899999987 7999887789999999
Q ss_pred HHHHhh--cCEEEEe
Q psy2386 202 DLHLNY--IDGVMLG 214 (311)
Q Consensus 202 ~~~l~~--adgVmig 214 (311)
.++++. +|.|++-
T Consensus 238 ~~~i~~~a~d~i~~d 252 (341)
T cd03327 238 KRLLEGRAVDILQPD 252 (341)
T ss_pred HHHHHcCCCCEEecC
Confidence 999975 9988865
No 279
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.46 E-value=0.038 Score=51.80 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+| +..|-...-..+.-.++++.+++.+ ++||.+-+-.. +.+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~-----~t~ 90 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTM----------GTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTL-----NTR 90 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------cccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccC-----CHH
Confidence 477889988998889999999998 2345555555666677777776665 47887755421 123
Q ss_pred HHHHHHHHHHHcCCCEEEEecC
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~R 154 (311)
+.+++++.+++.|+|++.+..-
T Consensus 91 ~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 91 DTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHHHHhCCCEEEECCC
Confidence 5789999999999999988643
No 280
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=96.45 E-value=0.087 Score=49.65 Aligned_cols=132 Identities=12% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
+..|+-..++..+|+++.+.++...+.||..+-+-.| | -.| .+.++++++.+ | .+++++
T Consensus 120 ~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-------------~~d----~~~v~~vr~~~--~-~~~l~v 178 (324)
T TIGR01928 120 DKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-------------QIM----HQLVKLRRLRF--P-QIPLVI 178 (324)
T ss_pred CeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-------------chh----HHHHHHHHHhC--C-CCcEEE
Confidence 3445555566678888888888777889999988643 1 012 35677777765 3 345554
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
.....-+.+. ...++.+++.++.++- + ..++-|++-.+++++.. ++||.+.=.+.++.++.+
T Consensus 179 DaN~~~~~~~-a~~~~~l~~~~~~~iE---------------e-P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~ 240 (324)
T TIGR01928 179 DANESYDLQD-FPRLKELDRYQLLYIE---------------E-PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARN 240 (324)
T ss_pred ECCCCCCHHH-HHHHHHHhhCCCcEEE---------------C-CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHH
Confidence 3222111223 3567888888877772 1 11223788899999987 799999888999999999
Q ss_pred HHhh--cCEEEEe
Q psy2386 204 HLNY--IDGVMLG 214 (311)
Q Consensus 204 ~l~~--adgVmig 214 (311)
+++. +|.+++-
T Consensus 241 ~~~~~~~dvi~~d 253 (324)
T TIGR01928 241 LIELGNVKVINIK 253 (324)
T ss_pred HHHcCCCCEEEeC
Confidence 9975 8888764
No 281
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.43 E-value=0.15 Score=48.66 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH 121 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi 121 (311)
..|+-..+...+++++.+.++...+.| |..+-+-.|- .+++.-.+.++++++.++ +.+.+-.
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDa 195 (365)
T cd03318 131 SLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDV 195 (365)
T ss_pred ceEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 345544555556666655555555678 9999886541 134444566778887764 3344444
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.-+|+. ++..++++.+++.|+.+|- + ..++-+++..+++++.. .+||.+.=.+.+++|+
T Consensus 196 N~~~~~----~~A~~~~~~l~~~~~~~iE---------------e-P~~~~~~~~~~~l~~~~-~~pia~dE~~~~~~~~ 254 (365)
T cd03318 196 NQAWDE----STAIRALPRLEAAGVELIE---------------Q-PVPRENLDGLARLRSRN-RVPIMADESVSGPADA 254 (365)
T ss_pred CCCCCH----HHHHHHHHHHHhcCcceee---------------C-CCCcccHHHHHHHHhhc-CCCEEcCcccCCHHHH
Confidence 444543 3567899999999877661 1 11224788889999987 7999887788999999
Q ss_pred HHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386 202 DLHLNY--IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 202 ~~~l~~--adgVmigRa~l~~P~i~~~~~ 228 (311)
.++++. +|.+++=-.-.+...=+.++.
T Consensus 255 ~~~i~~~~~d~~~~d~~~~GGit~~~~~~ 283 (365)
T cd03318 255 FELARRGAADVFSLKIAKSGGLRRAQKVA 283 (365)
T ss_pred HHHHHhCCCCeEEEeecccCCHHHHHHHH
Confidence 999975 899887433333333333333
No 282
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.42 E-value=0.12 Score=49.29 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 45 EHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 45 ~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
..|+-..+...++ +++.+.++.+.+.||..+-+..+ | +.-.+.++++|+.++ .+++++
T Consensus 125 ~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g---~~~l~l 183 (354)
T cd03317 125 SIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFP---DIPLMA 183 (354)
T ss_pred eEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCC---CCeEEE
Confidence 3455555544444 77887777777889999988753 1 122355777777753 455554
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
.....-+.++. .+++.+++.++.+|- + ..++-|++-.+++++.. .+||.+.=.+.|++|+.+
T Consensus 184 DaN~~~~~~~a-~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pia~dEs~~~~~~~~~ 245 (354)
T cd03317 184 DANSAYTLADI-PLLKRLDEYGLLMIE---------------Q-PLAADDLIDHAELQKLL-KTPICLDESIQSAEDARK 245 (354)
T ss_pred ECCCCCCHHHH-HHHHHhhcCCccEEE---------------C-CCChhHHHHHHHHHhhc-CCCEEeCCccCCHHHHHH
Confidence 32221112233 468888888877762 1 12234788888999987 699988888999999999
Q ss_pred HHhh--cCEEEEehhhhhC
Q psy2386 204 HLNY--IDGVMLGREAYKN 220 (311)
Q Consensus 204 ~l~~--adgVmigRa~l~~ 220 (311)
+++. +|.+.+-=.-.+.
T Consensus 246 ~~~~~~~d~~~ik~~~~GG 264 (354)
T cd03317 246 AIELGACKIINIKPGRVGG 264 (354)
T ss_pred HHHcCCCCEEEecccccCC
Confidence 9975 8998885433333
No 283
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.41 E-value=0.064 Score=49.67 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS 142 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~ 142 (311)
.|++++++||+.|=+--.+=+ ... +---..++ ..+.+.+.++.|.+++++||+|-+-.|+-+.. +....++.++
T Consensus 25 SAri~e~aGf~Ai~~sg~~~a-~~l-G~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~---~v~~tv~~~~ 98 (285)
T TIGR02317 25 AALLAERAGFEAIYLSGAAVA-ASL-GLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAF---NVARTVREME 98 (285)
T ss_pred HHHHHHHcCCCEEEEcHHHHH-HhC-CCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHH---HHHHHHHHHH
Confidence 467888999999988632211 111 00011133 55666777788888899999999999987632 4678899999
Q ss_pred HcCCCEEEEecCc
Q psy2386 143 SAGCRTFIVHARN 155 (311)
Q Consensus 143 ~~G~~~itvh~Rt 155 (311)
++|+.+|++-..+
T Consensus 99 ~aG~agi~IEDq~ 111 (285)
T TIGR02317 99 DAGAAAVHIEDQV 111 (285)
T ss_pred HcCCeEEEEecCC
Confidence 9999999997543
No 284
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.39 E-value=0.1 Score=47.52 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEe
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHR 122 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR 122 (311)
..|+..-+.+.+++.. +.++...+.||..+-+-+| -.+++.-.+.++++++.++ ..+.+-..
T Consensus 72 ~v~~~~~~~~~~~~~~-~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN 135 (263)
T cd03320 72 RIPVNALLPAGDAAAL-GEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDAN 135 (263)
T ss_pred CcceeEEecCCCHHHH-HHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 3456666777777444 4455555679999988654 1234555567778887763 33444444
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
-+|+. ++...+++.+++.++.+|- + ..++-|++..++++ . .+||.+.=.+.+..|+.
T Consensus 136 ~~w~~----~~A~~~~~~l~~~~i~~iE---------------q-P~~~~d~~~~~~l~--~-~~PIa~dEs~~~~~~~~ 192 (263)
T cd03320 136 GGWSL----EEALAFLEALAAGRIEYIE---------------Q-PLPPDDLAELRRLA--A-GVPIALDESLRRLDDPL 192 (263)
T ss_pred CCCCH----HHHHHHHHhhcccCCceEE---------------C-CCChHHHHHHHHhh--c-CCCeeeCCccccccCHH
Confidence 44543 3567889999998887772 1 11234677777776 4 69999988899999999
Q ss_pred HHHhh--cCEEEEehhhhhCC
Q psy2386 203 LHLNY--IDGVMLGREAYKNP 221 (311)
Q Consensus 203 ~~l~~--adgVmigRa~l~~P 221 (311)
++++. +|.|++==.-.+..
T Consensus 193 ~~~~~~~~d~v~~k~~~~GGi 213 (263)
T cd03320 193 ALAAAGALGALVLKPALLGGP 213 (263)
T ss_pred HHHhcCCCCEEEECchhcCCH
Confidence 99975 88887753333333
No 285
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.39 E-value=0.22 Score=46.16 Aligned_cols=114 Identities=9% Similarity=0.140 Sum_probs=72.4
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-ccCCCCC----c--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IGIDDIN----S--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 168 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~~~~~----~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~ 168 (311)
.+|-+...++++..+. .+++|-.-+- +|-.++. . +-+..+..+.+++.|+|.+.+.=.|. -+-|.+
T Consensus 114 eeNi~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~-HG~Y~~----- 186 (285)
T PRK07709 114 EENVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSV-HGPYKG----- 186 (285)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccc-ccCcCC-----
Confidence 4566777777777665 3666655442 2211110 0 11234445555788999998754442 111222
Q ss_pred CCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386 169 IPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~ 217 (311)
.+..||+.+++|++.+ ++|++.-|+=..+ +++++++.. +.-|=|++.+
T Consensus 187 ~p~L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 236 (285)
T PRK07709 187 EPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN 236 (285)
T ss_pred CCccCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence 2458999999999998 8999999987776 566777765 7777777765
No 286
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.37 E-value=0.093 Score=48.64 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=83.2
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCC-------ccccccCcccCcccC-----Ch---HHHHHHHHHH
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCP-------SNRVQNGFFGAILMT-----KP---LLVSDCIKAM 109 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP-------~~~v~~~~~G~~Ll~-----~~---~~~~~iv~~v 109 (311)
.|+++- .|.+ .-.+..+.+.+.| +.+|.+-.=-| .+...+.. .++++ ++ ..+.++.+ .
T Consensus 11 nP~~~a-ag~~--~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~--~~~~n~~g~~~~g~~~~~~~~~~-~ 84 (296)
T cd04740 11 NPVILA-SGTF--GFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFLEELLP-W 84 (296)
T ss_pred CCCEEC-CCCC--CCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC--cceeeecCCCCcCHHHHHHHHHH-H
Confidence 566654 3332 1223334445556 89998864332 22221111 22222 22 33334333 4
Q ss_pred hccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386 110 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189 (311)
Q Consensus 110 ~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv 189 (311)
++..+.|+.|-++-. + .+++.+.++.++++|+|+|.+|--.....+. |..-...+..-.+.++++++.+ ++||
T Consensus 85 ~~~~~~p~ivsi~g~-~----~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~-~~Pv 157 (296)
T cd04740 85 LREFGTPVIASIAGS-T----VEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKAT-DVPV 157 (296)
T ss_pred hhcCCCcEEEEEecC-C----HHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhcc-CCCE
Confidence 444578988877632 2 3357889999999999999998432211110 1100011112346788888877 7898
Q ss_pred E--EecCCCCHHHHHHHHhh--cCEEEE
Q psy2386 190 I--INGGIKTKKEIDLHLNY--IDGVML 213 (311)
Q Consensus 190 i--~nGgI~s~~da~~~l~~--adgVmi 213 (311)
+ .+.++.+..++.+.++. +|+|.+
T Consensus 158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 158 IVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 7 44555555555554443 998865
No 287
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.37 E-value=0.021 Score=56.23 Aligned_cols=156 Identities=16% Similarity=0.252 Sum_probs=96.6
Q ss_pred CCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEeccCC----------Cc-------cccccCcccCcccC-----
Q psy2386 44 EEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLNCGC----------PS-------NRVQNGFFGAILMT----- 97 (311)
Q Consensus 44 ~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~IdiN~gC----------P~-------~~v~~~~~G~~Ll~----- 97 (311)
..+-.|.|+. |-+++ .+ ..++.|+|=+|= |- .+.|..-.|..+..
T Consensus 212 ~~~s~I~QvaSGRFGV~~~-------yL--~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHH 282 (485)
T COG0069 212 DGRSAIKQVASGRFGVTPE-------YL--ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHH 282 (485)
T ss_pred cccceEEEeccccCccCHH-------Hh--CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcc
Confidence 3456888885 44555 22 235888887652 22 22233444554443
Q ss_pred ---ChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCC-CCCc
Q psy2386 98 ---KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNR-KIPI 171 (311)
Q Consensus 98 ---~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~-~~~~ 171 (311)
.++-+.+.|..+++.. ..+|+||+-.+.. ++.+.. +.++++|.|+|.|-.. =.|-+|..-. +.+
T Consensus 283 DiysieDLaqlI~dLk~~~~~~~I~VKlva~~~--------v~~iaagvakA~AD~I~IdG~~G-GTGAsP~~~~~~~G- 352 (485)
T COG0069 283 DIYSIEDLAQLIKDLKEANPWAKISVKLVAEHG--------VGTIAAGVAKAGADVITIDGADG-GTGASPLTSIDHAG- 352 (485)
T ss_pred cccCHHHHHHHHHHHHhcCCCCeEEEEEecccc--------hHHHHhhhhhccCCEEEEcCCCC-cCCCCcHhHhhcCC-
Confidence 4678889999999975 4679999876422 223333 7899999999986542 1122221111 111
Q ss_pred CcHHH-HHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386 172 LKYNF-VYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 172 ~~~~~-i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l 218 (311)
.-|+. +.+..+. + ..+-|++.|++.|..|+...+.. ||.|-+|++++
T Consensus 353 iP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l 407 (485)
T COG0069 353 IPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL 407 (485)
T ss_pred chHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence 22443 2222221 1 14789999999999999998876 99999999975
No 288
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.32 E-value=0.09 Score=47.15 Aligned_cols=138 Identities=15% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEe--cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386 50 FQV--GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID 126 (311)
Q Consensus 50 ~Ql--~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~ 126 (311)
+.+ .+++|..+. +.+.++|+|.|-+|...+ .+.+.+.+++.++.. +.-+.|-+-..++
T Consensus 60 ~Kl~Di~~t~~~~i---~~~~~~gad~itvH~~ag----------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~ 120 (230)
T PRK00230 60 LKLHDIPNTVAKAV---RALAKLGVDMVNVHASGG----------------PRMMKAAREALEPKSRPLLIAVTVLTSMD 120 (230)
T ss_pred eehhhccccHHHHH---HHHHHcCCCEEEEcccCC----------------HHHHHHHHHHhhccCCCeEEEEEECCCCC
Confidence 445 577777654 445689999999995432 344445555444321 1223332222222
Q ss_pred CCC--------c-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 127 DIN--------S-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 127 ~~~--------~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
..+ + .+....+++...+.|++.+.+.+. .+..+++..++-.+...+||+
T Consensus 121 ~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---------------------~~~~ir~~~~~~~~~v~pGI~- 178 (230)
T PRK00230 121 EEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---------------------EAAAIREATGPDFLLVTPGIR- 178 (230)
T ss_pred HHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH---------------------HHHHHHhhcCCceEEEcCCcC-
Confidence 100 0 113345667777889988866422 134445444333456778886
Q ss_pred HH-----------HHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386 198 KK-----------EIDLHLNY-IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 198 ~~-----------da~~~l~~-adgVmigRa~l~~P~i~~~~~ 228 (311)
++ ...+.++. +|+|++||+.+..+.-...++
T Consensus 179 ~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 179 PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHH
Confidence 33 35555555 999999999987766554443
No 289
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.31 E-value=0.014 Score=57.58 Aligned_cols=68 Identities=21% Similarity=0.447 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..+.++.+.++|++.|.|..-. |.+ ..-++.|+++++.+|++||++ |+|.|+++++.+++. ||+|-
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSH----GHS--------IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCC----CcH--------hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4577889999999999985432 111 124678999999888899988 999999999999987 99997
Q ss_pred Ee
Q psy2386 213 LG 214 (311)
Q Consensus 213 ig 214 (311)
+|
T Consensus 292 vg 293 (450)
T TIGR01302 292 VG 293 (450)
T ss_pred EC
Confidence 65
No 290
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.28 E-value=0.19 Score=44.48 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDFV 134 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~ 134 (311)
++....++|+.+.+.|+..+++| .+ +.++.+++.+++|+..-.+.++++.+- ....
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~-------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~ 81 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN-------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPT 81 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC-------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCC
Confidence 56778889999999999888741 12 344556666789986545555432110 0012
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.+.++.+.++|++.|.+........ ......++++++++.. ++|++. ++.|++++....+. +|.+.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p---------~~~~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRP---------DGETLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCC---------CCcCHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcCCCEEEc
Confidence 4577889999999888754321000 0012457788888876 688776 68899999888776 998866
Q ss_pred e
Q psy2386 214 G 214 (311)
Q Consensus 214 g 214 (311)
.
T Consensus 150 ~ 150 (219)
T cd04729 150 T 150 (219)
T ss_pred c
Confidence 3
No 291
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.28 E-value=0.07 Score=48.23 Aligned_cols=142 Identities=12% Similarity=0.039 Sum_probs=93.0
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l 141 (311)
.|++++++|||.|=+--+..+ ...|+=....-..+.+...+++|++.+. .||++-+-.|+... .++..+.++++
T Consensus 24 sA~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~~l 98 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAKTF 98 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHHHH
Confidence 467888899999988532211 1112222223456778888888888875 79999999987753 23567889999
Q ss_pred HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC---------------CHHHHHHHH-
Q psy2386 142 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK---------------TKKEIDLHL- 205 (311)
Q Consensus 142 ~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~---------------s~~da~~~l- 205 (311)
.++|+++|.+-+-.. ..+.++.++++ .+||++==|.. +.+++.+.+
T Consensus 99 ~~aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~ 160 (240)
T cd06556 99 MRAGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIA 160 (240)
T ss_pred HHcCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHH
Confidence 999999999976421 22456777665 48888776652 233444444
Q ss_pred ------hh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386 206 ------NY-IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 206 ------~~-adgVmigRa~l~~P~i~~~~~~~ 230 (311)
+. ||+|.+= +. ++...+++.+.
T Consensus 161 Ra~ay~~AGAd~i~~e-~~--~~e~~~~i~~~ 189 (240)
T cd06556 161 DALAYAPAGADLIVME-CV--PVELAKQITEA 189 (240)
T ss_pred HHHHHHHcCCCEEEEc-CC--CHHHHHHHHHh
Confidence 22 9999985 33 55566666554
No 292
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.25 E-value=0.087 Score=49.02 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCEEEeccCCCccc--cccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNR--VQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~--v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~ 140 (311)
.|++++++||+.|=+--.+-+.. -..+. | +-..+.+.+.++.|.+++++||+|-+-.|+-+.. +....++.
T Consensus 28 SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g---~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~---~v~r~V~~ 100 (294)
T TIGR02319 28 SAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G---FTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAM---SVWRATRE 100 (294)
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHHHH
Confidence 57888999999997631111100 00111 1 2234566677788888899999999999986643 35677999
Q ss_pred HHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCc-HHHHHHHH---HhCC--CCeEEEecCCCC---HHHHHHHH----h
Q psy2386 141 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILK-YNFVYNLK---KDFP--ELEIIINGGIKT---KKEIDLHL----N 206 (311)
Q Consensus 141 l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~-~~~i~~i~---~~~~--~ipvi~nGgI~s---~~da~~~l----~ 206 (311)
++++|+.+|++-..+. ...|+.+.. +..+ -+++.+|+ +... ++-|++==|... .+++.+-. +
T Consensus 101 ~~~aGaagi~IEDq~~pK~cg~~~~k----~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e 176 (294)
T TIGR02319 101 FERVGIVGYHLEDQVNPKRCGHLEGK----RLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA 176 (294)
T ss_pred HHHcCCeEEEEECCCCccccCCCCCc----cccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence 9999999999965431 112221110 0111 13444443 3222 233444334433 44443322 2
Q ss_pred h-cCEEEEehhhhhCCcchHHhHhh
Q psy2386 207 Y-IDGVMLGREAYKNPFLMSNFDLN 230 (311)
Q Consensus 207 ~-adgVmigRa~l~~P~i~~~~~~~ 230 (311)
. ||+|.+- + +.++.-.+++.+.
T Consensus 177 AGAD~ifi~-~-~~~~~ei~~~~~~ 199 (294)
T TIGR02319 177 AGADCIFLE-A-MLDVEEMKRVRDE 199 (294)
T ss_pred hCCCEEEec-C-CCCHHHHHHHHHh
Confidence 2 9999994 2 4666656666554
No 293
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.24 E-value=0.015 Score=57.68 Aligned_cols=69 Identities=10% Similarity=0.125 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..+.++.|.++|++.|.+..-. |.+ ..-.+.++++++.+|++|||+ |.+.|.+.++++.+. ||+|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEE
Confidence 35688999999999999984322 111 023578999999888999999 889999999999986 9998
Q ss_pred EEe
Q psy2386 212 MLG 214 (311)
Q Consensus 212 mig 214 (311)
-||
T Consensus 292 ~vg 294 (475)
T TIGR01303 292 KVG 294 (475)
T ss_pred EEC
Confidence 765
No 294
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.23 E-value=0.082 Score=49.15 Aligned_cols=155 Identities=13% Similarity=0.090 Sum_probs=88.1
Q ss_pred HHHHHHHcCCCEEEeccC-CC-ccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCG-CP-SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~g-CP-~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~ 140 (311)
.|++++++||+.|=+--. +- ...-..+. . +-..+.+.+.++.|.+++++||+|-+-.|+-+. .+....++.
T Consensus 29 SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~---g-~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~r~V~~ 101 (292)
T PRK11320 29 HALLAERAGFKAIYLSGGGVAAASLGLPDL---G-ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGA---FNIARTVKS 101 (292)
T ss_pred HHHHHHHcCCCEEEeCHHHHHhHhcCCCCC---C-CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHHHH
Confidence 468889999999977522 21 10001111 1 234566677888888889999999999998642 256788999
Q ss_pred HHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCcHHHHHHHH---HhCC--CCeEEEecCCCC---HHHHHHHH----hh
Q psy2386 141 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNLK---KDFP--ELEIIINGGIKT---KKEIDLHL----NY 207 (311)
Q Consensus 141 l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~--~ipvi~nGgI~s---~~da~~~l----~~ 207 (311)
++++|+.+|++-.... ...|+.+.. ..-+. -+++.+|+ +... ++-|++==|... .+++.+-. +.
T Consensus 102 ~~~aGaagi~IEDq~~pK~cg~~~~~--~lv~~-ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eA 178 (292)
T PRK11320 102 MIKAGAAAVHIEDQVGAKRCGHRPNK--EIVSQ-EEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEA 178 (292)
T ss_pred HHHcCCeEEEEecCCCccccCCCCCC--cccCH-HHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHc
Confidence 9999999999965431 111221110 01111 13444444 3221 334444445443 44443322 22
Q ss_pred -cCEEEEehhhhhCCcchHHhHh
Q psy2386 208 -IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 208 -adgVmigRa~l~~P~i~~~~~~ 229 (311)
||+|.+-- ..++.-++++.+
T Consensus 179 GAD~ifi~~--~~~~~~i~~~~~ 199 (292)
T PRK11320 179 GADMIFPEA--MTELEMYRRFAD 199 (292)
T ss_pred CCCEEEecC--CCCHHHHHHHHH
Confidence 99999942 445555555544
No 295
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.22 E-value=0.099 Score=50.71 Aligned_cols=121 Identities=8% Similarity=0.121 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHH
Q psy2386 56 EPKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 56 ~~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~ 133 (311)
+|+++.+.++.+. +.||..+-|..|- .+++.-.+.++++|+.+ ++.+.|...-+|+. ++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~----~~ 228 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSL----ET 228 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCH----HH
Confidence 6888877776655 4699999986431 23455567788888876 23344444434443 35
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV 211 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV 211 (311)
..++++.+++ ++.++ |+. . .|++..+++++.. ++||.+.=-+.+.+++.++++. +|.+
T Consensus 229 A~~~~~~l~~-~l~~i---------------EeP-~--~d~~~~~~L~~~~-~~PIa~dEs~~~~~~~~~~i~~~avdil 288 (395)
T cd03323 229 AIRLAKELEG-VLAYL---------------EDP-C--GGREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVDIP 288 (395)
T ss_pred HHHHHHhcCc-CCCEE---------------ECC-C--CCHHHHHHHHHhc-CCCEEcCCcccCHHHHHHHHHcCCCcEE
Confidence 7888999988 77766 111 1 2788899999988 7999887788999999999975 8888
Q ss_pred EEeh
Q psy2386 212 MLGR 215 (311)
Q Consensus 212 migR 215 (311)
++-=
T Consensus 289 ~~d~ 292 (395)
T cd03323 289 LADH 292 (395)
T ss_pred eecc
Confidence 7653
No 296
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=96.22 E-value=0.13 Score=49.94 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=95.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc---cccCcccCc-------------cc---CChHHHHHHHHHHhcc
Q psy2386 52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR---VQNGFFGAI-------------LM---TKPLLVSDCIKAMRDS 112 (311)
Q Consensus 52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~---v~~~~~G~~-------------Ll---~~~~~~~~iv~~v~~~ 112 (311)
..+.+++.+.+-|+.+.+.||..+-|..|-|..+ ....+.|.. .. +.++...+.++++|+.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4566888876666666678999999987743210 000000000 00 1124456889999998
Q ss_pred cc--ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386 113 VE--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 190 (311)
Q Consensus 113 ~~--~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi 190 (311)
++ +.+.+-..-+|+. ++...+++.+++.++.+|- + ..++-+++..+++++.. .+||.
T Consensus 203 ~G~~~~l~vDaN~~w~~----~~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~L~~~~-~iPIa 261 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTP----IEAARLGKSLEPYRLFWLE---------------D-PTPAENQEAFRLIRQHT-TTPLA 261 (404)
T ss_pred hCCCceEEEECCCCCCH----HHHHHHHHhccccCCcEEE---------------C-CCCccCHHHHHHHHhcC-CCCEE
Confidence 73 4555655555653 3578889999998887772 1 12234788899999987 79998
Q ss_pred EecCCCCHHHHHHHHhh--cCEEEEe
Q psy2386 191 INGGIKTKKEIDLHLNY--IDGVMLG 214 (311)
Q Consensus 191 ~nGgI~s~~da~~~l~~--adgVmig 214 (311)
+.=.+.++.++.++++. +|.|++-
T Consensus 262 ~dEs~~~~~~~~~li~~~a~dii~~d 287 (404)
T PRK15072 262 VGEVFNSIWDCKQLIEEQLIDYIRTT 287 (404)
T ss_pred eCcCccCHHHHHHHHHcCCCCEEecC
Confidence 87789999999999976 8998863
No 297
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.21 E-value=0.071 Score=49.75 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+|+|=++ +..|-......+.=.++++.+++.++ +||.+-+-. .. .+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~----------GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~--~~---t~ 86 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVL----------GTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS--NS---TA 86 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------CCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC--Cc---HH
Confidence 478889999999999999999887 23344445566666778888888773 677664332 22 23
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHH
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLH 204 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~ 204 (311)
+.+++++.+++.|+|++.+.+-.- ...+ ...-+++.+.+.+++ ++|+| +| |--.+++.+.++
T Consensus 87 eai~lak~a~~~Gad~il~v~PyY--~k~~-------~~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~~e~i~~l 154 (299)
T COG0329 87 EAIELAKHAEKLGADGILVVPPYY--NKPS-------QEGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLSPETIARL 154 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCC--cCCC-------hHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHH
Confidence 678999999999999998875431 1100 011345566666665 56643 44 333444444444
No 298
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.20 E-value=0.038 Score=51.98 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 135 RDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 135 ~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
.+.++.|.++| +|.|+|..- +|+|- .-.+.|+.+++..| -+.+..|.|-|+++++++++. ||+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~A----hGhs~--------~~i~~ik~ir~~~p-~~~viaGNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVA----NGYSE--------HFVEFVKLVREAFP-EHTIMAGNVVTGEMVEELILSGADIV 175 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECC----CCcHH--------HHHHHHHHHHhhCC-CCeEEEecccCHHHHHHHHHcCCCEE
Confidence 57788888885 999998532 23221 13578999999886 467788999999999999987 9999
Q ss_pred EEe
Q psy2386 212 MLG 214 (311)
Q Consensus 212 mig 214 (311)
-||
T Consensus 176 kVg 178 (343)
T TIGR01305 176 KVG 178 (343)
T ss_pred EEc
Confidence 887
No 299
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.19 E-value=0.028 Score=50.87 Aligned_cols=75 Identities=8% Similarity=0.128 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.+++.|+++|.|..-..+++| +++.+.++++.+ ++||+..+.|.++.++.+.... ||+|
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~G------------s~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADav 128 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGG------------SLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAI 128 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCC------------CHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEE
Confidence 3578999999999999988754333333 789999999998 8999999999999999998876 9999
Q ss_pred EEehhhhhC
Q psy2386 212 MLGREAYKN 220 (311)
Q Consensus 212 migRa~l~~ 220 (311)
.+=-+++.+
T Consensus 129 LLI~~~L~~ 137 (247)
T PRK13957 129 LLIVRILTP 137 (247)
T ss_pred EeEHhhCCH
Confidence 887666653
No 300
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.18 E-value=0.094 Score=45.41 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE--EEEeccCCCCCcH-HHHHH
Q psy2386 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRIGIDDINSY-DFVRD 136 (311)
Q Consensus 60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--vKiR~g~~~~~~~-~~~~e 136 (311)
|++.|+-++.-|+.+|-+| + + +=++++|+.+++||. +|-. +++.+-+ -.+.+
T Consensus 1 m~~mA~Aa~~gGA~giR~~-----------~--------~----~dI~aik~~v~lPIIGi~K~~--y~~~~V~ITPT~~ 55 (192)
T PF04131_consen 1 MARMAKAAEEGGAVGIRAN-----------G--------V----EDIRAIKKAVDLPIIGIIKRD--YPDSDVYITPTLK 55 (192)
T ss_dssp HHHHHHHHHHCT-SEEEEE-----------S--------H----HHHHHHHTTB-S-EEEE-B-S--BTTSS--BS-SHH
T ss_pred CHHHHHHHHHCCceEEEcC-----------C--------H----HHHHHHHHhcCCCEEEEEecc--CCCCCeEECCCHH
Confidence 3455666667889999988 1 2 335678999999985 3422 2221110 02356
Q ss_pred HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
-++.+.++|++.|.+.+..+ ..|..-.++++++++.. ...-.||.|.+|+....+. +|.|.-
T Consensus 56 ev~~l~~aGadIIAlDaT~R-----------~Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 56 EVDALAEAGADIIALDATDR-----------PRPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIGT 118 (192)
T ss_dssp HHHHHHHCT-SEEEEE-SSS-----------S-SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE-
T ss_pred HHHHHHHcCCCEEEEecCCC-----------CCCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEEc
Confidence 68889999999999986543 11123457899999864 6677899999999999876 996643
No 301
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.17 E-value=0.032 Score=52.64 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=64.9
Q ss_pred cccC-ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCC--CEEEEecCccccccCCCCcCCCCC
Q psy2386 94 ILMT-KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGC--RTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 94 ~Ll~-~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~--~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
.+.+ +++.....++.++. ..+.|-+.+|...+ ..+-+..+.++|+ |.|.+..-.. .+
T Consensus 65 ~~~k~~~e~~~~~~r~~~~---~~l~v~~~vg~~~~-----~~~~~~~Lv~ag~~~d~i~iD~a~g----h~-------- 124 (326)
T PRK05458 65 IMHRFDPEARIPFIKDMHE---QGLIASISVGVKDD-----EYDFVDQLAAEGLTPEYITIDIAHG----HS-------- 124 (326)
T ss_pred EEecCCHHHHHHHHHhccc---cccEEEEEecCCHH-----HHHHHHHHHhcCCCCCEEEEECCCC----ch--------
Confidence 3445 67665555544332 23355555554332 2467888889965 9999932221 00
Q ss_pred cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
..-.+.|+++++.+|++| +..|+|.|++++..+.+. ||++.+|
T Consensus 125 ~~~~e~I~~ir~~~p~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 125 DSVINMIQHIKKHLPETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhhCCCCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 013577999999886655 556778899999999987 9999987
No 302
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.14 E-value=0.32 Score=45.12 Aligned_cols=115 Identities=11% Similarity=0.196 Sum_probs=71.5
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC----C-cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCC
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI----N-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 167 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~----~-~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~ 167 (311)
+.+|-+...++++-.+. .+++|-.-+- +| ..+. . .+-+..+..+.+++.|+|.|.|.=.|. -+-|.+
T Consensus 113 ~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~-HG~Y~~---- 186 (286)
T PRK08610 113 FEENVATTKKVVEYAHE-KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV-HGPYKG---- 186 (286)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc-ccccCC----
Confidence 34566777777776654 4666654432 22 1111 0 011234444555789999998754442 111211
Q ss_pred CCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386 168 KIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 168 ~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~ 217 (311)
.|..||+.+++|++.+ ++|++.-||=..+ +++++++.. +.-|=|++.+
T Consensus 187 -~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l 236 (286)
T PRK08610 187 -EPKLGFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTEN 236 (286)
T ss_pred -CCCCCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHH
Confidence 2457999999999998 8999999988776 556677765 7777777665
No 303
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=96.14 E-value=0.21 Score=46.67 Aligned_cols=147 Identities=7% Similarity=0.069 Sum_probs=94.6
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
..+....|...+|+.+.+.+.. +.||..+-+..| . .+++.-.+.++++++.++- .+++|+.
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG------------~---~~~~~d~~~v~~vr~~~g~--~~~l~vD 160 (307)
T TIGR01927 100 SNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVG------------V---GELAREGMLVNLLLEALPD--KAELRLD 160 (307)
T ss_pred cccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeC------------C---CChHHHHHHHHHHHHHcCC--CCeEEEe
Confidence 3345566667778877665554 678988887533 1 1455556777888887632 3444543
Q ss_pred CCCCCcHHHHHHHHHHHHH---cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSS---AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~---~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
....-+.++..++++.+++ .++.+| |+. ...++..+++++.. .+||.+.=.+.+..|+
T Consensus 161 aN~~w~~~~A~~~~~~l~~~~~~~i~~i---------------EqP---~~~~~~~~~l~~~~-~~Pia~dEs~~~~~d~ 221 (307)
T TIGR01927 161 ANGGLSPDEAQQFLKALDPNLRGRIAFL---------------EEP---LPDADEMSAFSEAT-GTAIALDESLWELPQL 221 (307)
T ss_pred CCCCCCHHHHHHHHHhcccccCCCceEE---------------eCC---CCCHHHHHHHHHhC-CCCEEeCCCcCChHHH
Confidence 2222223356788999987 667777 111 11236778888887 7999988899999999
Q ss_pred HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386 202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~ 229 (311)
.+++.. +|.|.+==.-.+.+.-..++.+
T Consensus 222 ~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~ 251 (307)
T TIGR01927 222 ADEYGPGWRGALVIKPAIIGSPAKLRDLAQ 251 (307)
T ss_pred HHHHhcCCCceEEECchhcCCHHHHHHHHH
Confidence 999975 7888775444444444444433
No 304
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.14 E-value=0.37 Score=45.52 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=87.7
Q ss_pred CCCeEEE--ecCCCHHHHHHHHHHHHHcCCCEEEecc---------CCCccccccC----cccCcc-----cCCh--HHH
Q psy2386 45 EHPIAFQ--VGDNEPKKLAKSAKIIQKWGYDEINLNC---------GCPSNRVQNG----FFGAIL-----MTKP--LLV 102 (311)
Q Consensus 45 ~~p~~~Q--l~g~~~~~~~~aa~~~~~~g~d~IdiN~---------gCP~~~v~~~----~~G~~L-----l~~~--~~~ 102 (311)
..|+++- -++.+.+.+ +.+...|+-+|.+-- |-|.+..... .-..++ ++++ +..
T Consensus 12 ~nPv~~ASg~~~~~~e~~----~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~~ 87 (325)
T cd04739 12 KNPLVASASPLSRNLDNI----RRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEEY 87 (325)
T ss_pred CCCCEeCCcCCCCCHHHH----HHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHHH
Confidence 3566662 333444444 346678888887753 3333322110 001222 2343 444
Q ss_pred HHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386 103 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNLK 181 (311)
Q Consensus 103 ~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~~~~i~~i~ 181 (311)
.+-+...++..+.||.+-+- |.+ .+++.++++.++++|+|+|.+|---. ...+..|.. .+..-.+.++.++
T Consensus 88 ~~~i~~~~~~~~~pvi~si~-g~~----~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~---~~~~~~eiv~~v~ 159 (325)
T cd04739 88 LELIRRAKRAVSIPVIASLN-GVS----AGGWVDYARQIEEAGADALELNIYALPTDPDISGAE---VEQRYLDILRAVK 159 (325)
T ss_pred HHHHHHHHhccCCeEEEEeC-CCC----HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccch---HHHHHHHHHHHHH
Confidence 44444445555789888763 222 23578999999999999999874310 001111110 0011247788888
Q ss_pred HhCCCCeEEE--ecCCCCHHHHHHHHhh--cCEEEEe
Q psy2386 182 KDFPELEIII--NGGIKTKKEIDLHLNY--IDGVMLG 214 (311)
Q Consensus 182 ~~~~~ipvi~--nGgI~s~~da~~~l~~--adgVmig 214 (311)
+.+ ++||+. ++++.+..++.+.+.. +|+|.+.
T Consensus 160 ~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 160 SAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred hcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 887 789874 4566677777666654 9998773
No 305
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.11 E-value=0.3 Score=43.78 Aligned_cols=132 Identities=11% Similarity=0.196 Sum_probs=90.3
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
.+.++|...|+..+.+-.+.+++ |+|.+-+-. |.=+|| ..+=-.+++++++.+++|+.|=+=+
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN-------------~tfg~~~i~~ir~~t~~~~DvHLMv- 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPN-------------LTLSPFFVSQVKKLASKPLDVHLMV- 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCC-------------cccCHHHHHHHHhcCCCCeEEEEEe-
Confidence 37789999999999999999988 888755532 322222 1222356778888778887775544
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH 204 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~ 204 (311)
.+ ...+++.+.++|++.|++|.-... . --...+..+++.--+.=|..|=+ +..+++..+
T Consensus 69 -~~------P~~~i~~~~~aGad~it~H~Ea~~--~-----------~~~~~i~~Ik~~G~kaGlalnP~-T~~~~l~~~ 127 (229)
T PRK09722 69 -TD------PQDYIDQLADAGADFITLHPETIN--G-----------QAFRLIDEIRRAGMKVGLVLNPE-TPVESIKYY 127 (229)
T ss_pred -cC------HHHHHHHHHHcCCCEEEECccCCc--c-----------hHHHHHHHHHHcCCCEEEEeCCC-CCHHHHHHH
Confidence 22 357889999999999999965310 0 01356777877532334556656 788888888
Q ss_pred HhhcCEEEEe
Q psy2386 205 LNYIDGVMLG 214 (311)
Q Consensus 205 l~~adgVmig 214 (311)
+..+|.|++=
T Consensus 128 l~~vD~VLvM 137 (229)
T PRK09722 128 IHLLDKITVM 137 (229)
T ss_pred HHhcCEEEEE
Confidence 8889988873
No 306
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.11 E-value=0.4 Score=42.80 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=82.8
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHH--HHHHHHhccccceeEEEEec
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS--DCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~--~iv~~v~~~~~~pvsvKiR~ 123 (311)
-.+..++...|+..+.+-.+.+.+.|++.|-+.. +++ . . .|.... ++++++++.++.|+.|-+-+
T Consensus 8 ~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~--------~d~--~-f--~~~~~~g~~~~~~l~~~~~~~~~vhlmv 74 (229)
T PLN02334 8 AIIAPSILSADFANLAEEAKRVLDAGADWLHVDV--------MDG--H-F--VPNLTIGPPVVKALRKHTDAPLDCHLMV 74 (229)
T ss_pred ceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec--------ccC--C-c--CCccccCHHHHHHHHhcCCCcEEEEecc
Confidence 3577888888988899999999999999998841 111 0 1 122222 56667777666665554443
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc-cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC-CCHHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI-KTKKEI 201 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt-~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI-~s~~da 201 (311)
. + ..+++..+.++|++.|++|... . . ....+.++++++. ++-+-..-.- +..+.+
T Consensus 75 ~--~------p~d~~~~~~~~gad~v~vH~~q~~--~-----------d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~ 131 (229)
T PLN02334 75 T--N------PEDYVPDFAKAGASIFTFHIEQAS--T-----------IHLHRLIQQIKSA--GMKAGVVLNPGTPVEAV 131 (229)
T ss_pred C--C------HHHHHHHHHHcCCCEEEEeecccc--c-----------hhHHHHHHHHHHC--CCeEEEEECCCCCHHHH
Confidence 1 1 2356677789999999999772 1 0 0123556666654 3322222222 345666
Q ss_pred HHHHhh--cCEEEEe
Q psy2386 202 DLHLNY--IDGVMLG 214 (311)
Q Consensus 202 ~~~l~~--adgVmig 214 (311)
.+.+.. +|.|++|
T Consensus 132 ~~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 132 EPVVEKGLVDMVLVM 146 (229)
T ss_pred HHHHhccCCCEEEEE
Confidence 677777 9999886
No 307
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.09 E-value=0.23 Score=45.48 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCCEEE-e----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 57 PKKLAKSAKIIQKWGYDEIN-L----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~Id-i----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
.+.+....+.+++.|...+- + .. ||.-+ -||..+.+.+++..+ .+ +++||.+|.-..-
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lk-----I~s~~~~n~~LL~~~----a~-~gkPVilk~G~~~ 143 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQ-----IGARNMQNFELLKEV----GK-QGKPVLLKRGMGN 143 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEE-----ECcccccCHHHHHHH----hc-CCCcEEEeCCCCC
Confidence 56666666777777755432 1 12 55443 578889998875544 33 5899999866532
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCC-----H
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKT-----K 198 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s-----~ 198 (311)
+ .++....++.+.+.|...|++ |..+..+.++ ....+|+..+..+++.+ ++||+.+ +-... +
T Consensus 144 t----~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~------~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~ 212 (260)
T TIGR01361 144 T----IEEWLYAAEYILSSGNGNVILCERGIRTFEKA------TRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVI 212 (260)
T ss_pred C----HHHHHHHHHHHHHcCCCcEEEEECCCCCCCCC------CcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHH
Confidence 2 335677888888999976655 5334323221 12237999999999887 7999993 32222 3
Q ss_pred HHHHHHHhh-cCEEEEehh
Q psy2386 199 KEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 199 ~da~~~l~~-adgVmigRa 216 (311)
.-+...... |||+||=+=
T Consensus 213 ~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 213 PLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred HHHHHHHHcCCCEEEEEeC
Confidence 333344444 999988643
No 308
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.07 E-value=0.33 Score=44.90 Aligned_cols=116 Identities=13% Similarity=0.243 Sum_probs=71.9
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~ 165 (311)
+.+|-+...++++..+. .+++|-.-+- +| ..+. ..+-+..+..+.+++.|+|.|.|.=.|. -+.|.+
T Consensus 108 ~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~yk~-- 183 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTA-HGLYKK-- 183 (282)
T ss_pred HHHHHHHHHHHHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCcc-ccCcCC--
Confidence 34566777777777665 3666654432 21 1111 0011233444556789999998754442 111221
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhhh
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~l 218 (311)
.|..||+.+++|++.+ ++|++.-||=..++ +++++.+. +.-|=|++.+.
T Consensus 184 ---~p~Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 184 ---TPKLDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIELGICKVNVATELK 234 (282)
T ss_pred ---CCccCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 2458999999999998 89999888766554 45566655 77788887763
No 309
>KOG4175|consensus
Probab=96.04 E-value=0.3 Score=42.67 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386 175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY 218 (311)
Q Consensus 175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l 218 (311)
+++.++++...+.|+-..=||.++|..++.=.-+|||.+|+...
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsvaDGVvvGSkiv 239 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSVADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhhhccceEecHHHH
Confidence 46788888776789888779999999998876699999998763
No 310
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.04 E-value=0.29 Score=43.33 Aligned_cols=124 Identities=19% Similarity=0.099 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDFV 134 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~ 134 (311)
++++..+.|+.+.+.|..++.++ . .+.++++++.+++||...++..+.+..- ....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence 45778888888889999888874 0 3567777887899986554521000000 0001
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.+.++.+.++|+|.|++-..... ++ .+....+++.++++. +.+|++. ++.|.+++.+..+. +|.+.+
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~----~p-----~~~~~~~~i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRP----RP-----DGETLAELVKRIKEY-PGQLLMA--DCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC----CC-----CCCCHHHHHHHHHhC-CCCeEEE--eCCCHHHHHHHHHcCCCEEEc
Confidence 35688899999998887544210 00 001234667777764 4788875 67899999887766 998877
Q ss_pred e
Q psy2386 214 G 214 (311)
Q Consensus 214 g 214 (311)
+
T Consensus 146 ~ 146 (221)
T PRK01130 146 T 146 (221)
T ss_pred C
Confidence 4
No 311
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=96.01 E-value=0.14 Score=46.84 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~ 133 (311)
..|++...+-|+...+.|+|.||||++-+ ....++.+..+|+.+++.+++|+++-..-
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~~---------- 78 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSPN---------- 78 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCCC----------
Confidence 45677777777777788999999998732 13457889999999998889999885432
Q ss_pred HHHHHHHHHHc--CCCEE
Q psy2386 134 VRDFVGTVSSA--GCRTF 149 (311)
Q Consensus 134 ~~e~~~~l~~~--G~~~i 149 (311)
.+.++...++ |++.|
T Consensus 79 -~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 79 -PAAIEAGLKVAKGPPLI 95 (261)
T ss_pred -HHHHHHHHHhCCCCCEE
Confidence 2455555655 77765
No 312
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.21 Score=45.48 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=88.9
Q ss_pred CCCeEEEecCCC---HHH----HHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386 45 EHPIAFQVGDNE---PKK----LAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 115 (311)
Q Consensus 45 ~~p~~~Ql~g~~---~~~----~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~ 115 (311)
+.|++++|.+++ |+. +....+-+..+|+|+ +-||.|..... +..+.+.++++...+ .+.
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~-----------~~i~~~~~v~~~a~~-~Gm 144 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETER-----------EMIENISQVVEDAHE-LGM 144 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchH-----------HHHHHHHHHHHHHHH-cCC
Confidence 789999999883 222 222223444678885 55677765431 112333333333333 488
Q ss_pred eeEEEEe-ccCCC----CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386 116 DITVKHR-IGIDD----INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 190 (311)
Q Consensus 116 pvsvKiR-~g~~~----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi 190 (311)
|+.+=+- .|... ....+.+...++...+.|+|.|.+- |. -+-+-.+++.+.+| +||+
T Consensus 145 p~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~--------yt---------g~~e~F~~vv~~~~-vpVv 206 (265)
T COG1830 145 PLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK--------YT---------GDPESFRRVVAACG-VPVV 206 (265)
T ss_pred ceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec--------CC---------CChHHHHHHHHhCC-CCEE
Confidence 8766332 23222 1122233344556778999999542 11 13466778888885 9999
Q ss_pred EecCCCC--HHHHHHHHh----h-cCEEEEehhhhhCCc
Q psy2386 191 INGGIKT--KKEIDLHLN----Y-IDGVMLGREAYKNPF 222 (311)
Q Consensus 191 ~nGgI~s--~~da~~~l~----~-adgVmigRa~l~~P~ 222 (311)
..||=.+ .+++.++.. . +.|+.+||=++..|.
T Consensus 207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 9998765 555666554 3 999999999877765
No 313
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.00 E-value=0.11 Score=47.48 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCCCcHHHHHHH-HHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDF-VGT 140 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~~~~~~~~e~-~~~ 140 (311)
.|++++++|||.|=. |-....+. -|+-....-..+.+...+++|++.++.| |.+-+-.|... .+.++..+. .+.
T Consensus 27 sArl~e~aG~d~i~v--Gds~~~~~-lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~-~~~~~av~~a~r~ 102 (264)
T PRK00311 27 FAKLFDEAGVDVILV--GDSLGMVV-LGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQ-ASPEQALRNAGRL 102 (264)
T ss_pred HHHHHHHcCCCEEEE--CHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCcc-CCHHHHHHHHHHH
Confidence 568889999999943 43332222 2333444556777888888888888775 77766433221 222233344 455
Q ss_pred HHHcCCCEEEEecC
Q psy2386 141 VSSAGCRTFIVHAR 154 (311)
Q Consensus 141 l~~~G~~~itvh~R 154 (311)
++++|+++|.+-+.
T Consensus 103 ~~~aGa~aVkiEdg 116 (264)
T PRK00311 103 MKEAGAHAVKLEGG 116 (264)
T ss_pred HHHhCCeEEEEcCc
Confidence 55699999998754
No 314
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.99 E-value=0.053 Score=51.01 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=68.2
Q ss_pred cccC-ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCC
Q psy2386 94 ILMT-KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 94 ~Ll~-~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
.+.+ +++.-.+.++.++.. .+ .+-+.+|..++ -.+.+..+.++| +|.|.+..- +|+|-
T Consensus 62 i~hK~~~E~~~sfvrk~k~~-~L--~v~~SvG~t~e-----~~~r~~~lv~a~~~~d~i~~D~a----hg~s~------- 122 (321)
T TIGR01306 62 IMHRFDEESRIPFIKDMQER-GL--FASISVGVKAC-----EYEFVTQLAEEALTPEYITIDIA----HGHSN------- 122 (321)
T ss_pred EEecCCHHHHHHHHHhcccc-cc--EEEEEcCCCHH-----HHHHHHHHHhcCCCCCEEEEeCc----cCchH-------
Confidence 3445 666545445554332 23 44455555543 257788888888 699987422 22210
Q ss_pred cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
.-++.++++++.+| .|++..|.|.|+++++.+++. ||+|.+|
T Consensus 123 -~~~~~i~~i~~~~p-~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 123 -SVINMIKHIKTHLP-DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred -HHHHHHHHHHHhCC-CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 24678999999884 788999999999999999987 9999887
No 315
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.99 E-value=0.048 Score=51.33 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH--cCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS--AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176 (311)
Q Consensus 99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~--~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~ 176 (311)
++.-.+.++.++.....-++| .+|..++ -.+.++.|.+ +|+|.|+|..- +|+|- .-.+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~-----d~er~~~L~~~~~g~D~iviD~A----hGhs~--------~~i~~ 141 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDA-----DFEKTKQILALSPALNFICIDVA----NGYSE--------HFVQF 141 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHH-----HHHHHHHHHhcCCCCCEEEEECC----CCcHH--------HHHHH
Confidence 444444455555433223333 4444332 2466777777 59999998532 23221 13578
Q ss_pred HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
|+++++.+|+++ +..|.|-|++.++++++. ||+|=||=|
T Consensus 142 ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVGIG 181 (346)
T PRK05096 142 VAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVGIG 181 (346)
T ss_pred HHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEccc
Confidence 999999998877 567999999999999986 999876533
No 316
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.98 E-value=0.4 Score=44.27 Aligned_cols=116 Identities=10% Similarity=0.177 Sum_probs=71.8
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCC
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR 167 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~ 167 (311)
+.+|-+...++++-.+.. +++|-.-+- +| -.+. ..+-+..+....+++.|+|.|.+.=.|. -+.|.+
T Consensus 105 ~eeNi~~t~~vv~~ah~~-gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~-HG~Y~~---- 178 (276)
T cd00947 105 FEENVAKTKEVVELAHAY-GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS-HGAYKG---- 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHc-CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc-ccccCC----
Confidence 445677777887776663 555544332 11 1111 0011233444555778999998643332 111111
Q ss_pred CCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH-HHHHHhh-cCEEEEehhh
Q psy2386 168 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 168 ~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d-a~~~l~~-adgVmigRa~ 217 (311)
..+..||+.+++|.+.+ ++|++.-||=..+++ ++++.+. +.-|=+++.+
T Consensus 179 ~~p~L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 229 (276)
T cd00947 179 GEPKLDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDL 229 (276)
T ss_pred CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence 12458999999999998 799999998877744 6777765 7778788776
No 317
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=95.97 E-value=0.27 Score=46.29 Aligned_cols=131 Identities=6% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI 123 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~ 123 (311)
.|+.+-| .+++.+.+.++...+.||..+-+-.|- .+++.-.+.++++++.+ +..+.+-..-
T Consensus 110 ~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 172 (320)
T PRK02714 110 LSYSALL--PAGEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANG 172 (320)
T ss_pred Cceeeec--CCCHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4444444 334666666666667799888775331 23454556777888776 3445454444
Q ss_pred cCCCCCcHHHHHHHHHHHHH---cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSS---AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~---~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
+|+. ++..++++.+++ .++.+| ++ ..++-|++..+++++.. ++||.+.=.+.++.|
T Consensus 173 ~w~~----~~A~~~~~~l~~l~~~~i~~i---------------Eq-P~~~~~~~~~~~l~~~~-~~Pia~DEs~~~~~d 231 (320)
T PRK02714 173 GLSL----EEAKRWLQLCDRRLSGKIEFI---------------EQ-PLPPDQFDEMLQLSQDY-QTPIALDESVANLAQ 231 (320)
T ss_pred CCCH----HHHHHHHHHHhhccCCCccEE---------------EC-CCCcccHHHHHHHHHhC-CCCEEECCccCCHHH
Confidence 5543 346778888877 466666 11 11224788889999987 799999889999999
Q ss_pred HHHHHhh--cCEEEEe
Q psy2386 201 IDLHLNY--IDGVMLG 214 (311)
Q Consensus 201 a~~~l~~--adgVmig 214 (311)
+.++++. +|.|++=
T Consensus 232 ~~~~~~~~a~d~v~ik 247 (320)
T PRK02714 232 LQQCYQQGWRGIFVIK 247 (320)
T ss_pred HHHHHHcCCCCEEEEc
Confidence 9999975 7777663
No 318
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.95 E-value=0.098 Score=50.76 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..+.++.|.++|+|.|++..-. |.+ ..-++.++++++.+|+++ +..|+|.|+++++.+++. +|+|.
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~----g~~--------~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH----GHS--------TRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----CCC--------hhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEE
Confidence 4688999999999999985432 111 124578999999888776 567999999999999986 99999
Q ss_pred Ee
Q psy2386 213 LG 214 (311)
Q Consensus 213 ig 214 (311)
+|
T Consensus 221 vG 222 (404)
T PRK06843 221 VG 222 (404)
T ss_pred EC
Confidence 87
No 319
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.95 E-value=0.14 Score=47.15 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=90.8
Q ss_pred HHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l 141 (311)
.|+++++.||++|=+.- |+-..--..++. .-..+.+.+.++.|.+++++||+|-+-.|+-+.. +..+.++.+
T Consensus 30 sA~la~~aGF~al~~sg~~vA~slG~pD~~----~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~---nvartV~~~ 102 (289)
T COG2513 30 SALLAERAGFKALYLSGAGVAASLGLPDLG----ITTLDEVLADARRITDAVDLPVLVDIDTGFGEAL---NVARTVREL 102 (289)
T ss_pred HHHHHHHcCCeEEEeccHHHHHhcCCCccc----cccHHHHHHHHHHHHhhcCCceEEeccCCCCcHH---HHHHHHHHH
Confidence 57888999999998861 111111111111 1235677788888888999999999999987732 567889999
Q ss_pred HHcCCCEEEEecCcc-ccccC-CCCcCCCCCcCcH----HHHHHHHHhCCCCeEEEec--CC---CCHHHHHHHH----h
Q psy2386 142 SSAGCRTFIVHARNA-FLKKL-NPKQNRKIPILKY----NFVYNLKKDFPELEIIING--GI---KTKKEIDLHL----N 206 (311)
Q Consensus 142 ~~~G~~~itvh~Rt~-~~~G~-~g~~~~~~~~~~~----~~i~~i~~~~~~ipvi~nG--gI---~s~~da~~~l----~ 206 (311)
+++|+.++++..-.. ..-|+ .|+ +..+. +.|+.+++..++.+++.+. |. ...+++.+-. +
T Consensus 103 ~~aG~agi~iEDq~~pk~cgh~~gk-----~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e 177 (289)
T COG2513 103 EQAGAAGIHIEDQVGPKRCGHLPGK-----ELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVE 177 (289)
T ss_pred HHcCcceeeeeecccchhcCCCCCC-----CcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHH
Confidence 999999999863321 01121 111 11222 3455555554444444433 21 1244444332 2
Q ss_pred h-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 207 Y-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 207 ~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
. ||++-. ..+.++..++++.+..
T Consensus 178 AGAD~if~--~al~~~e~i~~f~~av 201 (289)
T COG2513 178 AGADAIFP--EALTDLEEIRAFAEAV 201 (289)
T ss_pred cCCcEEcc--ccCCCHHHHHHHHHhc
Confidence 2 776654 4456666666666543
No 320
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.95 E-value=0.04 Score=55.10 Aligned_cols=68 Identities=21% Similarity=0.437 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..+-++.|.++|+|.|.+..- +|.+ ..-|+.|+++++.+|+++ +..|+|.|+++++.+++. ||+|.
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~----~g~~--------~~~~~~i~~ik~~~p~~~-vi~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSS----QGDS--------IYQLEMIKYIKKTYPELD-VIGGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCC----CCCc--------HHHHHHHHHHHHhCCCCc-EEEecCCCHHHHHHHHHcCcCEEE
Confidence 368899999999999998643 2221 125799999999886544 456899999999999987 99998
Q ss_pred Ee
Q psy2386 213 LG 214 (311)
Q Consensus 213 ig 214 (311)
+|
T Consensus 316 vg 317 (505)
T PLN02274 316 VG 317 (505)
T ss_pred EC
Confidence 75
No 321
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.93 E-value=0.079 Score=48.24 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=67.8
Q ss_pred CHHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---------cC
Q psy2386 56 EPKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GI 125 (311)
Q Consensus 56 ~~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---------g~ 125 (311)
++++ +..|.+++++.|+|.|-|--|. ...++++++.++ ++||.-=+-+ |+
T Consensus 92 s~e~av~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGy 151 (261)
T PF02548_consen 92 SPEQAVRNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGY 151 (261)
T ss_dssp SHHHHHHHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCc
Confidence 4554 5555566677999999996221 234556666664 8999875532 11
Q ss_pred C----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 126 D----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 126 ~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
. +.++...+.+-++.++++|+-.|.+..-. .+..++|.+.+ +||+|+-|.=.
T Consensus 152 r~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp------------------~~la~~It~~l-~IPtIGIGaG~----- 207 (261)
T PF02548_consen 152 RVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVP------------------AELAKAITEAL-SIPTIGIGAGP----- 207 (261)
T ss_dssp --CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBB------------------HHHHHHHHHHS-SS-EEEESS-S-----
T ss_pred eEEecCHHHHHHHHHHHHHHHHcCccEEeeecCH------------------HHHHHHHHHhC-CCCEEecCCCC-----
Confidence 1 11223467888999999999999886543 36778889998 89999877311
Q ss_pred HHHHhhcCEEEEe
Q psy2386 202 DLHLNYIDGVMLG 214 (311)
Q Consensus 202 ~~~l~~adgVmig 214 (311)
.|||-++=
T Consensus 208 -----~cDGQvLV 215 (261)
T PF02548_consen 208 -----GCDGQVLV 215 (261)
T ss_dssp -----TSSEEEE-
T ss_pred -----CCCceEEe
Confidence 28886653
No 322
>PRK08999 hypothetical protein; Provisional
Probab=95.92 E-value=0.046 Score=50.99 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE 216 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa 216 (311)
+..+.+.|+|++.+.+=..+ . + ++. .++..++.++++++.. ++||++-||| |++++.++++. ++||.+-++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t-~--t-k~~--~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPT-A--S-HPG--AAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred HHHHHhcCCCEEEECCCcCC-C--C-CCC--CCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence 45667789999988654321 0 0 111 2346789999999887 8999999999 89999999987 999998776
Q ss_pred h
Q psy2386 217 A 217 (311)
Q Consensus 217 ~ 217 (311)
+
T Consensus 311 ~ 311 (312)
T PRK08999 311 L 311 (312)
T ss_pred e
Confidence 5
No 323
>PRK14057 epimerase; Provisional
Probab=95.90 E-value=0.52 Score=42.92 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=85.7
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cC--CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK 120 (311)
..++.++|...|+..+.+-.+.+++.|+|.+-+- =| +|+- .+ -|+. ++++++ +.|+.|=
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tf------Gp~~----i~~i~~--~~p~DvH 81 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF-----TV------GPWA----VGQLPQ--TFIKDVH 81 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc-----cc------CHHH----HHHhcc--CCCeeEE
Confidence 4689999999999999999999999999875553 23 3331 12 2444 445554 4666554
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCe-----------
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELE----------- 188 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ip----------- 188 (311)
+=+ .+ ...+++.+.++|+|.|++|.-.. .+ ...+..+++. .++
T Consensus 82 LMV--~~------P~~~i~~~~~aGad~It~H~Ea~---------------~~~~~~l~~Ir~~--G~k~~~~~~~~kaG 136 (254)
T PRK14057 82 LMV--AD------QWTAAQACVKAGAHCITLQAEGD---------------IHLHHTLSWLGQQ--TVPVIGGEMPVIRG 136 (254)
T ss_pred eee--CC------HHHHHHHHHHhCCCEEEEeeccc---------------cCHHHHHHHHHHc--CCCcccccccceeE
Confidence 433 22 35788999999999999996631 12 3567777765 232
Q ss_pred EEEecCCCCHHHHHHHHhhcCEEEEe
Q psy2386 189 IIINGGIKTKKEIDLHLNYIDGVMLG 214 (311)
Q Consensus 189 vi~nGgI~s~~da~~~l~~adgVmig 214 (311)
|..|=+ ++.+.+..++..+|.|++=
T Consensus 137 lAlnP~-Tp~e~i~~~l~~vD~VLvM 161 (254)
T PRK14057 137 ISLCPA-TPLDVIIPILSDVEVIQLL 161 (254)
T ss_pred EEECCC-CCHHHHHHHHHhCCEEEEE
Confidence 333333 6778888888889988873
No 324
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.90 E-value=0.12 Score=48.05 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH-HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF-VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~-i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
-+..+.++|+|.|-+..-+ +.++.. +..+++..+++|+.+.||| +.+.+.++.+. +|+|.+|
T Consensus 208 ea~eA~~~GaD~I~LDn~~---------------~e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 208 QVQEALEYGADIIMLDNMP---------------VDLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHHHHHcCCCEEEECCCC---------------HHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEc
Confidence 3455668999999875221 112222 2223332457999999999 59999999876 9999999
Q ss_pred hhhhhCCc
Q psy2386 215 REAYKNPF 222 (311)
Q Consensus 215 Ra~l~~P~ 222 (311)
+....-|+
T Consensus 272 sl~~sa~~ 279 (288)
T PRK07428 272 APITRSPW 279 (288)
T ss_pred hhhhCCCc
Confidence 98875555
No 325
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.86 E-value=0.17 Score=47.97 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=90.0
Q ss_pred CCCCeEEEecCCCH--------HHHHHHHHHHHHcCCCEE--EeccCCCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386 44 EEHPIAFQVGDNEP--------KKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 113 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~--------~~~~~aa~~~~~~g~d~I--diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~ 113 (311)
.+.|++++|.+++. +.+....+.+.+.|+|+| -+|.|.+... +..+.+.+++++..+ .
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~-----------~ml~~l~~i~~ea~~-~ 191 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESR-----------RQIEEISEAFEEAHE-L 191 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHHHH-h
Confidence 36889999988531 223333566777899865 4566643321 123445566666555 4
Q ss_pred cceeEEEE-eccC--CCCC----cHHHHHHHHHHHHHcCCCEEEEecCcc--ccc--cCCCCcCC-C---CCcCcHHHHH
Q psy2386 114 EIDITVKH-RIGI--DDIN----SYDFVRDFVGTVSSAGCRTFIVHARNA--FLK--KLNPKQNR-K---IPILKYNFVY 178 (311)
Q Consensus 114 ~~pvsvKi-R~g~--~~~~----~~~~~~e~~~~l~~~G~~~itvh~Rt~--~~~--G~~g~~~~-~---~~~~~~~~i~ 178 (311)
++|+.+=+ -.|. .++. ..+.+...++...+.|+|.|.+---+. .+. +|.-++.+ | .-.-.-+.++
T Consensus 192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR 271 (348)
T ss_pred CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence 89976522 1132 1111 123344556777799999998642210 000 00000000 0 0001224455
Q ss_pred HHHHhCC--CCeEEEecCCC-CHHHHHHH-------Hhh-cCEEEEehhhhhCCc
Q psy2386 179 NLKKDFP--ELEIIINGGIK-TKKEIDLH-------LNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 179 ~i~~~~~--~ipvi~nGgI~-s~~da~~~-------l~~-adgVmigRa~l~~P~ 222 (311)
.+.+.+. .+||+..||=. +.+++.++ ++. +.||.+||-.+..|.
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 5566541 38999888877 44444443 333 899999999877764
No 326
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.82 E-value=0.22 Score=46.29 Aligned_cols=126 Identities=10% Similarity=0.139 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+|+|=+| +..|-...-..+.-.++++.+++.+ .+||.+-+ |. . .+
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~---~-t~ 86 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAA----------GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GG---N-TS 86 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEC----------CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--Cc---c-HH
Confidence 477889999999999999999887 2334444445555566666666554 47777755 32 1 33
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee--cCCCCHHHHHHHHh
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN--GGIKTKKEIDLHLN 206 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n--GgI~s~~da~~~l~ 206 (311)
+.+++++.+++.|+|++.+.+-. +...+ ...-.++.+++.++. ++||+ .| |--.+++.+.++.+
T Consensus 87 ~ai~~a~~a~~~Gadav~~~pP~--y~~~s-------~~~i~~~f~~v~~a~-~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 87 DAIEIARLAEKAGADGYLLLPPY--LINGE-------QEGLYAHVEAVCEST-DLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHh
Confidence 67899999999999999886542 11111 012346677777776 68854 54 32346777777664
No 327
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.81 E-value=0.76 Score=40.41 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=79.9
Q ss_pred EEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc-CC
Q psy2386 50 FQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-ID 126 (311)
Q Consensus 50 ~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-~~ 126 (311)
+.++ ++++..+. +.+.++|+|.|-+|.-++ .+.+.++++.+++. +.++.+-+-+. +.
T Consensus 60 ~k~~di~~~~~~~~---~~~~~~gad~vtvh~e~g----------------~~~l~~~i~~~~~~-g~~~~v~~~~~~~~ 119 (215)
T PRK13813 60 LKVADIPNTNRLIC---EAVFEAGAWGIIVHGFTG----------------RDSLKAVVEAAAES-GGKVFVVVEMSHPG 119 (215)
T ss_pred eeccccHHHHHHHH---HHHHhCCCCEEEEcCcCC----------------HHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Confidence 4553 55555554 445578999999995432 23466777777764 66765543332 11
Q ss_pred CCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHH
Q psy2386 127 DINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLH 204 (311)
Q Consensus 127 ~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~ 204 (311)
..+. .+.+..++....+.|.+...+.. + ..+.++++++..+.-..+..|||+.. .++.++
T Consensus 120 ~~~~~~~~~~~v~~m~~e~G~~g~~~~~-~-----------------~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~ 181 (215)
T PRK13813 120 ALEFIQPHADKLAKLAQEAGAFGVVAPA-T-----------------RPERVRYIRSRLGDELKIISPGIGAQGGKAADA 181 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEECC-C-----------------cchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHH
Confidence 1111 12344556666778887664321 1 23556677665532113377898864 246666
Q ss_pred Hhh-cCEEEEehhhhhCCcc
Q psy2386 205 LNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 205 l~~-adgVmigRa~l~~P~i 223 (311)
++. +|++.+||+++..+..
T Consensus 182 ~~aGad~iV~Gr~I~~~~d~ 201 (215)
T PRK13813 182 IKAGADYVIVGRSIYNAADP 201 (215)
T ss_pred HHcCCCEEEECcccCCCCCH
Confidence 665 9999999998776653
No 328
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.80 E-value=0.14 Score=48.94 Aligned_cols=113 Identities=8% Similarity=0.031 Sum_probs=74.6
Q ss_pred ccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC
Q psy2386 91 FGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 169 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~ 169 (311)
.+++.+.+|+ ..+-.+.+|+.. +.||.+-+-.......+ ..++.+.++..+++++.+|--.. ..-.+ ..
T Consensus 97 s~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~---~~~~~~~~~~~~adal~l~l~~~-qe~~~-----p~ 166 (352)
T PRK05437 97 SQRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYG---VEEAQRAVEMIEADALQIHLNPL-QELVQ-----PE 166 (352)
T ss_pred ccHhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCC---HHHHHHHHHhcCCCcEEEeCccc-hhhcC-----CC
Confidence 3445577888 677778888876 88988865543221111 24566677778999999985321 01001 01
Q ss_pred CcCcH----HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKY----NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~----~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgVmig 214 (311)
+.-+| +.++++++.+ ++||+. +|.-.|.++++.+.+. +|+|.++
T Consensus 167 g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 167 GDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred CcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 12245 5788888887 799986 6666889999888776 9999983
No 329
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.79 E-value=0.17 Score=46.64 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+| | ..|-...-..+.-.++++.+++.+ ++||.+-+.. . +.+
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~-G---------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~----~-~~~ 82 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVC-G---------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS----N-NTA 82 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-C---------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC----c-cHH
Confidence 477889999999999999999998 2 233344444555566677666665 3676654332 1 234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-E-----ecCCCCHHHHHHHHh
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-I-----NGGIKTKKEIDLHLN 206 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~-----nGgI~s~~da~~~l~ 206 (311)
+.+++++.+++.|+|++.+..-. +...+ ...-+++.+++.+.. ++||+ . .|-..|++.+.++.+
T Consensus 83 ~~~~~a~~a~~~G~d~v~~~~P~--~~~~~-------~~~l~~~~~~ia~~~-~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 83 EAIELTKRAEKAGADAALVVTPY--YNKPS-------QEGLYAHFKAIAEAT-DLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEcccc--cCCCC-------HHHHHHHHHHHHhcC-CCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 67899999999999999886442 11111 011245667777765 67765 2 354556777766654
No 330
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.79 E-value=0.62 Score=43.85 Aligned_cols=104 Identities=13% Similarity=0.280 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC---Cc--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI---NS--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK 168 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~---~~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~ 168 (311)
.+|-+...++++..+. .+++|-.-+- +| ..+. +. +-+..+..+.+++.|+|.+.+.-.|. -+.|.+++...
T Consensus 122 eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~-HG~Y~~~~~~~ 199 (321)
T PRK07084 122 EENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTS-HGAYKFKPGQC 199 (321)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccc-cccccCCCCCC
Confidence 4556677777776654 3655544332 11 1111 00 11233444555678999998754442 11121110000
Q ss_pred CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386 169 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEI 201 (311)
Q Consensus 169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da 201 (311)
.+..||+.+++|++.++++|++.-|+=..+++.
T Consensus 200 ~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~ 232 (321)
T PRK07084 200 PPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEY 232 (321)
T ss_pred CCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHH
Confidence 245899999999999856999999987555433
No 331
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.78 E-value=0.18 Score=46.68 Aligned_cols=126 Identities=14% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+|. ..|-...-..+.=.++++.+++.+ ++||.+-+-. . +.+
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----~-~~~ 83 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS----N-STA 83 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC----c-hHH
Confidence 4778899999999999999999872 233333334444455666555554 3677654332 1 133
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-E-----ecCCCCHHHHHHHH
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-I-----NGGIKTKKEIDLHL 205 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~-----nGgI~s~~da~~~l 205 (311)
+.+++++.++++|+|++.+.+-. +...+. ..-+++..++.+.+ ++||+ . .|---|++.+.++.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~--~~~~~~-------~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPY--YNKPTQ-------EGLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCc--CCCCCH-------HHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHH
Confidence 67899999999999999886432 111100 01234555666665 56654 2 24334555555553
No 332
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.78 E-value=0.17 Score=46.97 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=81.3
Q ss_pred HHHHHHHc---------CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386 63 SAKIIQKW---------GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 63 aa~~~~~~---------g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~ 133 (311)
.|++++++ ||++|=+--.+=+ ... +---..++ ..+.+.+.++.|..++++||++.+-.| .+ ...
T Consensus 21 SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a-~s~-G~pD~~~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~---~~~ 93 (285)
T TIGR02320 21 SALIAEEARVEVGGESLGFDGIWSSSLTDS-TSR-GVPDIEEA-SWTQRLDVVEFMFDVTTKPIILDGDTG-GN---FEH 93 (285)
T ss_pred HHHHHHHhhhcccCcCCCcCEEEechHHHH-HHC-CCCCcCcC-CHHHHHHHHHHHHhhcCCCEEEecCCC-CC---HHH
Confidence 46778888 9999887522211 110 00011233 345555668888888899999998888 32 235
Q ss_pred HHHHHHHHHHcCCCEEEEecCcc-ccccCCCCc--CCCCCcC-cHHHHHHHHHh--CCCCeEEEecCCC----CHHHHHH
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQ--NRKIPIL-KYNFVYNLKKD--FPELEIIINGGIK----TKKEIDL 203 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~--~~~~~~~-~~~~i~~i~~~--~~~ipvi~nGgI~----s~~da~~ 203 (311)
+.+.++.+.++|+..|.+-..+. ...|+.|.. ....+.. ..+.|+.+++. -++++|++-=|.. +.+++.+
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~ 173 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALK 173 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHH
Confidence 67889999999999999954321 011211111 0111111 11233333333 1357777774432 4566554
Q ss_pred HHh----h-cCEEEEe
Q psy2386 204 HLN----Y-IDGVMLG 214 (311)
Q Consensus 204 ~l~----~-adgVmig 214 (311)
..+ . ||+|++=
T Consensus 174 Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 174 RAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHHHcCCCEEEec
Confidence 432 2 9999995
No 333
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.77 E-value=0.49 Score=43.95 Aligned_cols=115 Identities=15% Similarity=0.211 Sum_probs=71.5
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~ 165 (311)
+.+|-+...++++-.+.. +++|-.-+- +| ..+. ..+-+..+..+.+++.|+|.|.|.=.|. -+.|.+
T Consensus 113 ~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~-- 188 (288)
T TIGR00167 113 FEENIELTKKVVERAHKM-GVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNV-HGVYKG-- 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcc-ccccCC--
Confidence 345667777777765543 665544432 11 1111 0011223444445778999998765442 112221
Q ss_pred CCCCCc-CcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386 166 NRKIPI-LKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 166 ~~~~~~-~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~ 217 (311)
.+. .||+.+++|++.+ ++|++.-||=..+ ++++++... +.-|=|++.+
T Consensus 189 ---~p~~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 239 (288)
T TIGR00167 189 ---EPKGLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTEL 239 (288)
T ss_pred ---CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHH
Confidence 133 7999999999998 8999999988777 466777765 7778788776
No 334
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.76 E-value=1.5 Score=41.67 Aligned_cols=81 Identities=11% Similarity=0.217 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH---------------
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK--------------- 198 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~--------------- 198 (311)
.+..+.+++.|+|.|.+.=.|. .| |.+......+..||+.+++|++.++++|++.-|+=..+
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~--HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~ 251 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTS--HGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIK 251 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccc--cCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccc
Confidence 4445556788999998654432 11 11100000123799999999999856999999977665
Q ss_pred -------HHHHHHHhh-cCEEEEehhh
Q psy2386 199 -------KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 199 -------~da~~~l~~-adgVmigRa~ 217 (311)
++++++++. +.-|=|++.+
T Consensus 252 ~~~g~p~e~i~~ai~~GI~KVNi~Tdl 278 (347)
T TIGR01521 252 ETYGVPVEEIVEGIKYGVRKVNIDTDL 278 (347)
T ss_pred ccCCCCHHHHHHHHHCCCeeEEeChHH
Confidence 666666655 6667677665
No 335
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.73 E-value=1.6 Score=39.97 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=98.7
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.....|+++++++.+.++..+.|+.+++.|+|+|-+- -|... ..+.+-+.+-.+++.+++++|+.+--
T Consensus 63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~--pP~y~----------~~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV--PPYYN----------KPSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC--CCcCC----------CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3457899999999999999999999999999999994 34321 13457777888888888899998865
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
........- ..+++++|.+.+ +.++.... .|...+.++.+..++--.+.+|. -+.
T Consensus 131 ~P~~tg~~l---~~~~~~~L~~~~~v~giK~s~------------------~d~~~~~~~~~~~~~~~~v~~G~---d~~ 186 (281)
T cd00408 131 IPGRTGVDL---SPETIARLAEHPNIVGIKDSS------------------GDLDRLTRLIALLGPDFAVLSGD---DDL 186 (281)
T ss_pred CccccCCCC---CHHHHHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhcCCCeEEEEcc---hHH
Confidence 443221111 245666666521 22221111 36677777776653223444565 233
Q ss_pred HHHHHhh-cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386 201 IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYY 232 (311)
Q Consensus 201 a~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~ 232 (311)
+...+.. ++|.+.|-+.+ -|..+.++.+.+.
T Consensus 187 ~~~~l~~G~~G~i~~~~n~-~p~~~~~~~~~~~ 218 (281)
T cd00408 187 LLPALALGADGAISGAANV-APKLAVALYEAAR 218 (281)
T ss_pred HHHHHHcCCCEEEehHHhh-CHHHHHHHHHHHH
Confidence 3444444 99999887654 4777777766554
No 336
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.72 E-value=0.055 Score=56.83 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=56.3
Q ss_pred cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC---CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE---LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~---ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
+|+|++.+.+-..... .....++..|+.++++++.+ + +||++-||| +++++.++++. ++||.+-++++.
T Consensus 127 ~gaDYi~~Gpvf~T~t-----K~~~~~~lG~~~l~~~~~~~-~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 127 ALPDVIGIGPVASTAT-----KPDAPPALGVDGIAEIAAVA-QDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CCCCEEEECCccccCC-----CCCCCCCCCHHHHHHHHHhc-CcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 3599999865422100 11122346899999999887 5 999999999 78999999987 999999999987
Q ss_pred CCcchH
Q psy2386 220 NPFLMS 225 (311)
Q Consensus 220 ~P~i~~ 225 (311)
.++...
T Consensus 200 a~d~~~ 205 (755)
T PRK09517 200 AANPAA 205 (755)
T ss_pred CCCHHH
Confidence 776443
No 337
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.71 E-value=0.28 Score=45.41 Aligned_cols=127 Identities=9% Similarity=0.053 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386 55 NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY 131 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~ 131 (311)
=|.+.+.+-++.+.+. |+++|=++ +..|-...-..+.=.++++.+.+.+ .+||.+-+-. . +.
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~----------GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~----~-~~ 82 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVN----------GSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS----L-NL 82 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEC----------cCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC----C-CH
Confidence 4778899999999888 99999887 2233333334444456666665554 3677664332 1 12
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL 205 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l 205 (311)
++.+++++.+++.|+|++.+.+-.. ...+ ...-+++.+++.+++|++||+ .| |---+++.+.++.
T Consensus 83 ~~ai~~a~~a~~~Gad~v~~~~P~y--~~~~-------~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~ 153 (288)
T cd00954 83 KESQELAKHAEELGYDAISAITPFY--YKFS-------FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELF 153 (288)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC--CCCC-------HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 3678999999999999998764321 1110 001245566666665456654 22 3333555555554
No 338
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=95.69 E-value=0.79 Score=40.63 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=68.0
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC-
Q psy2386 50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI- 128 (311)
Q Consensus 50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~- 128 (311)
+.|.+.+++++.+.++.+...|+|.||+-+-+=.. .+.+.+.+.+..+++.+++|+.+=+|.-++.+
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~------------~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~ 69 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDYLEN------------DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR 69 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT------------TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc------------cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence 67899999999888888887799999997433211 56788889999999888999999999643221
Q ss_pred --CcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386 129 --NSYDFVRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 129 --~~~~~~~e~~~~l~~~G~~~itvh~R 154 (311)
.+.+.-.++.+.+.+.|+++|.|--.
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 12235678899999999999998644
No 339
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.69 E-value=0.14 Score=46.59 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~ 134 (311)
.+++...+-|+...+.|+|.||||++...|....- ......+.+..+++.+++.+++||++-..-
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~----~~~~E~~rl~~~v~~l~~~~~~piSIDT~~----------- 85 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV----SVEEELERVIPVLRALAGEPDVPISVDTFN----------- 85 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC----CHHHHHHHHHHHHHHHHhcCCCeEEEeCCc-----------
Confidence 46777777787777889999999988765532100 011234678888889888778998884331
Q ss_pred HHHHHHHHHcCCCEE
Q psy2386 135 RDFVGTVSSAGCRTF 149 (311)
Q Consensus 135 ~e~~~~l~~~G~~~i 149 (311)
.+.++...+.|++.|
T Consensus 86 ~~v~~aaL~~g~~iI 100 (258)
T cd00423 86 AEVAEAALKAGADII 100 (258)
T ss_pred HHHHHHHHHhCCCEE
Confidence 366777788887765
No 340
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=95.68 E-value=0.08 Score=52.97 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cC---EEEE
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-ID---GVML 213 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-ad---gVmi 213 (311)
+....+.|+|+|.+.+-... .+ ++. .++..++.++++++.. ++||++-|||. ++++.++++. ++ ||.+
T Consensus 403 ~~~a~~~gadyi~~gpif~t---~t-k~~--~~~~g~~~~~~~~~~~-~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav 474 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPT---NT-KAN--NKTIGLDGLREVCEAS-KLPVVAIGGIS-ASNAASVMESGAPNLKGVAV 474 (502)
T ss_pred HHHHhhcCCCEEEECCeecC---CC-CCC--CCCCCHHHHHHHHHcC-CCCEEEECCCC-HHHHHHHHHcCCCcCceEEE
Confidence 45566789999986432210 00 111 2456899999998876 79999999996 8999999876 76 9999
Q ss_pred ehhhhhCCc
Q psy2386 214 GREAYKNPF 222 (311)
Q Consensus 214 gRa~l~~P~ 222 (311)
+++++..+.
T Consensus 475 ~~~i~~~~d 483 (502)
T PLN02898 475 VSALFDQED 483 (502)
T ss_pred EeHHhcCCC
Confidence 999975444
No 341
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.68 E-value=0.1 Score=50.91 Aligned_cols=81 Identities=6% Similarity=-0.076 Sum_probs=57.6
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--------PELEIIINGGIKTKKEIDLHLNY-I 208 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--------~~ipvi~nGgI~s~~da~~~l~~-a 208 (311)
+.++.+.|+|+|.+-+-..+.. +....+|..|+.++++++.+ .++||++-||| +++++.+.++. +
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~T-----K~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa 386 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTT-----KQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGV 386 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCC-----CCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCC
Confidence 4556678999998754332100 11123456788887776654 16999999999 78999999987 9
Q ss_pred CEEEEehhhhhCCcch
Q psy2386 209 DGVMLGREAYKNPFLM 224 (311)
Q Consensus 209 dgVmigRa~l~~P~i~ 224 (311)
+||.+=|+++..+..-
T Consensus 387 ~GVAVVSAI~~A~DP~ 402 (437)
T PRK12290 387 SSLAVVRAITLAEDPQ 402 (437)
T ss_pred CEEEEehHhhcCCCHH
Confidence 9999999998665543
No 342
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.66 E-value=0.42 Score=43.42 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=69.1
Q ss_pred ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386 91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
-||..+++.+++.++ .+ +++||.+|.-..-+ .+++...++.+.+.|...|++--|- ..+| +..+..
T Consensus 104 Igs~~~~n~~LL~~v----a~-tgkPVilk~G~~~t----~~e~~~A~e~i~~~Gn~~i~L~eRg--~~~Y---~~~~~n 169 (250)
T PRK13397 104 VGARNMQNFEFLKTL----SH-IDKPILFKRGLMAT----IEEYLGALSYLQDTGKSNIILCERG--VRGY---DVETRN 169 (250)
T ss_pred ECcccccCHHHHHHH----Hc-cCCeEEEeCCCCCC----HHHHHHHHHHHHHcCCCeEEEEccc--cCCC---CCcccc
Confidence 478889997776554 33 48999999653322 3356777888889999766553321 1222 111222
Q ss_pred cCcHHHHHHHHHhCCCCeEEEe----cCCCCH--HHHHHHHhh-cCEEEEe
Q psy2386 171 ILKYNFVYNLKKDFPELEIIIN----GGIKTK--KEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~n----GgI~s~--~da~~~l~~-adgVmig 214 (311)
..|+..+..+++.+ ++||+.. +|.+.. .-+...+.. |||+||=
T Consensus 170 ~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE 219 (250)
T PRK13397 170 MLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMME 219 (250)
T ss_pred ccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEE
Confidence 46888888999877 7998875 454432 233444444 9999986
No 343
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.63 E-value=1.5 Score=40.63 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=95.2
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.....|++++++..+.++..+.++.+++.|+|+|-+-. |.. .-...+-+.+-.++|.++++.||.+=-
T Consensus 70 ~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y----------~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 70 AKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT--PFY----------YPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred hCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcC----------CCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45567999999999999999999999999999998863 321 111346677777888888889988753
Q ss_pred e---ccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386 122 R---IGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197 (311)
Q Consensus 122 R---~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s 197 (311)
- .|.+- ..+++.+|.+.. +-+|.... .|+..+.++.+..++..| .+|. +
T Consensus 138 ~P~~tg~~l------~~~~l~~L~~~pnvvgiK~s~------------------~d~~~~~~~~~~~~~~~v-~~G~--d 190 (293)
T PRK04147 138 IPALTGVNL------SLDQFNELFTLPKVIGVKQTA------------------GDLYQLERIRKAFPDKLI-YNGF--D 190 (293)
T ss_pred CchhhccCC------CHHHHHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhCCCCEE-EEee--h
Confidence 2 23221 245666665432 22221110 266667777766655544 4442 1
Q ss_pred HHHHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 198 KKEIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 198 ~~da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
+-+...+. +++|++.|-+.+. |..+.++.+.+..
T Consensus 191 -~~~~~~l~~G~~G~is~~~n~~-p~~~~~l~~~~~~ 225 (293)
T PRK04147 191 -EMFASGLLAGADGAIGSTYNVN-GWRARQIFEAAKA 225 (293)
T ss_pred -HHHHHHHHcCCCEEEechhhhC-HHHHHHHHHHHHC
Confidence 22223333 4999998866553 7777777665543
No 344
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.63 E-value=0.15 Score=47.34 Aligned_cols=83 Identities=8% Similarity=0.131 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+|- ..|-...-..+.=.++++.+.+.+ ++||.+-+ +. . ..
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv--~~-~---t~ 81 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAG----------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA--GY-G---TA 81 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec--CC-C---HH
Confidence 3678888888888899999998872 233333334444455666555554 57888755 32 1 23
Q ss_pred HHHHHHHHHHHcCCCEEEEec
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHA 153 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~ 153 (311)
+.+++++.++++|+|++.+.+
T Consensus 82 ~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 82 TAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHHhCCCEEEECC
Confidence 578999999999999998753
No 345
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.60 E-value=0.18 Score=47.80 Aligned_cols=113 Identities=7% Similarity=0.049 Sum_probs=71.7
Q ss_pred ccCcccCChHHHHHHHHHHhc-cccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC
Q psy2386 91 FGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 169 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~ 169 (311)
.+++.+.+|+...+. +.+|+ ..++|+.+-+-........ ..++.+.++..+++++.+|--.. +... ...
T Consensus 90 s~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~---~~~~~~~i~~i~adal~i~ln~~--q~~~----~p~ 159 (333)
T TIGR02151 90 SQRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGG---PEEAQEAIDMIEADALAIHLNVL--QELV----QPE 159 (333)
T ss_pred CchhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhcccc---HHHHHHHHHHhcCCCEEEcCccc--cccc----CCC
Confidence 344556789977666 77777 5689998865432111111 23455556666789998885321 1100 001
Q ss_pred CcCcH----HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKY----NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~----~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgVmig 214 (311)
+..+| +.++.+++.+ ++||+. +|.-.+.++++.+.+. +|+|-++
T Consensus 160 g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs 210 (333)
T TIGR02151 160 GDRNFKGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVA 210 (333)
T ss_pred CCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 11234 6788999988 799986 5655788888888776 9999995
No 346
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.60 E-value=0.15 Score=47.61 Aligned_cols=84 Identities=11% Similarity=0.168 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+| +..|-...-.++.=.++++.+++.+ ++||.+-+ +. +.+
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv--~~----~t~ 88 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAA----------GGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA--GG----GTA 88 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------cCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--CC----CHH
Confidence 367889988999999999999988 2234444445555566677666655 47887755 31 123
Q ss_pred HHHHHHHHHHHcCCCEEEEecC
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~R 154 (311)
+.+++++.+++.|+|++.+.+-
T Consensus 89 ~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 89 QAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHHHhCCCEEEECCC
Confidence 6789999999999999988643
No 347
>PRK15452 putative protease; Provisional
Probab=95.59 E-value=0.56 Score=46.24 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~ 133 (311)
..+++.+. .+.++|+|.|=+...--....... .+ +.+.+.+.++-+++. ++.|.+.+..-.. ++..+.
T Consensus 10 ag~~e~l~----aAi~~GADaVY~G~~~~~~R~~~~-----~f-~~edl~eav~~ah~~-g~kvyvt~n~i~~-e~el~~ 77 (443)
T PRK15452 10 AGTLKNMR----YAFAYGADAVYAGQPRYSLRVRNN-----EF-NHENLALGINEAHAL-GKKFYVVVNIAPH-NAKLKT 77 (443)
T ss_pred CCCHHHHH----HHHHCCCCEEEECCCccchhhhcc-----CC-CHHHHHHHHHHHHHc-CCEEEEEecCcCC-HHHHHH
Confidence 34555554 344789999988533222211111 11 235567777766653 6777777664333 233446
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CCCCHHHHHHHHhh-cCE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDG 210 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI~s~~da~~~l~~-adg 210 (311)
+.++++.+.+.|+|+|.|. |+..+..+++..|++||.+.- .|++...+.-+.+. ++.
T Consensus 78 ~~~~l~~l~~~gvDgvIV~--------------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~r 137 (443)
T PRK15452 78 FIRDLEPVIAMKPDALIMS--------------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTR 137 (443)
T ss_pred HHHHHHHHHhCCCCEEEEc--------------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcE
Confidence 6777888889999999884 555566666655667776654 45565555555444 666
Q ss_pred EEEehhh
Q psy2386 211 VMLGREA 217 (311)
Q Consensus 211 VmigRa~ 217 (311)
|.+.|-+
T Consensus 138 vvLSrEL 144 (443)
T PRK15452 138 VILSREL 144 (443)
T ss_pred EEECCcC
Confidence 6555543
No 348
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.59 E-value=0.16 Score=46.31 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~ 134 (311)
.+++...+-|+...+.|+|.||||+-...+... +-.-....+.+..+++.+++.+++||++-..-
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~----~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~----------- 85 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGAD----PVSVEEELERVIPVLEALRGELDVLISVDTFR----------- 85 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCC-----------
Confidence 356777777777778899999999644333110 00112344567778899988878998885331
Q ss_pred HHHHHHHHHcCCCEEE
Q psy2386 135 RDFVGTVSSAGCRTFI 150 (311)
Q Consensus 135 ~e~~~~l~~~G~~~it 150 (311)
.+.++...++|++.|-
T Consensus 86 ~~v~e~al~~G~~iIN 101 (257)
T cd00739 86 AEVARAALEAGADIIN 101 (257)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 3566777778988773
No 349
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=95.59 E-value=0.78 Score=42.54 Aligned_cols=115 Identities=11% Similarity=0.229 Sum_probs=71.4
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC---Cc----HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI---NS----YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~---~~----~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~ 165 (311)
+.+|-+...++++..+.. +++|-.-+- +| ..++ .. +-+..+..+.+++.|+|.|.|.=.|. -+.|.
T Consensus 110 ~eeNi~~T~evv~~Ah~~-gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~Y~--- 184 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA-HGLYS--- 184 (286)
T ss_pred HHHHHHHHHHHHHHHHHc-CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcc-cCCCC---
Confidence 345677778888776653 666544332 22 1111 00 11234445556788999998754442 11121
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~ 217 (311)
..|..||+.+++|++.+ ++|++.-||=..+ ++++++.+. ..-|=|++.+
T Consensus 185 --~~p~Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l 235 (286)
T PRK12738 185 --KTPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL 235 (286)
T ss_pred --CCCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 12458999999999998 8999988866554 555666655 7778788776
No 350
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.58 E-value=0.33 Score=45.13 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=++- ..|-...-..+.=.++++.+++.+ ++||.+-+-. . +.+
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~--~---~t~ 82 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA--L---NHD 82 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc--c---hHH
Confidence 3678888888988899999998872 233333334444455666555544 4677654332 1 233
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL 205 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l 205 (311)
+.+++++.+++.|+|++.+.+-. +...+ ...-.++.+.+.++.|++||+ .| |---+++.+.++.
T Consensus 83 ~ai~~a~~A~~~Gad~v~v~pP~--y~~~~-------~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 83 ETLELTKFAEEAGADAAMVIVPY--YNKPN-------QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcc--CCCCC-------HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 57899999999999999987542 11100 001234555666655456654 22 3334555555554
No 351
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=95.58 E-value=0.2 Score=45.32 Aligned_cols=98 Identities=15% Similarity=0.272 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---------cC--
Q psy2386 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GI-- 125 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---------g~-- 125 (311)
.+.+..|++++++.|+|.|-|- |+ ..+.++++.+.+. ++||.-=+-+ |+
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlE-------------GG------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGykv 152 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLE-------------GG------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYKV 152 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc-------------CC------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCeee
Confidence 4557777788888999999885 22 4567777777775 8998764432 11
Q ss_pred --CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 126 --DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 126 --~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
...++.+.+.+=++.++++|+-.+.+.+-. -+..++|.+.+ +||.|+-|
T Consensus 153 qGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp------------------~~lA~~IT~~l-siPtIGIG 203 (268)
T COG0413 153 QGRTEESAEKLLEDAKALEEAGAFALVLECVP------------------AELAKEITEKL-SIPTIGIG 203 (268)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCceEEEEeccH------------------HHHHHHHHhcC-CCCEEeec
Confidence 111233467778899999999999886542 25678888888 79999887
No 352
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.55 E-value=1.4 Score=45.06 Aligned_cols=214 Identities=13% Similarity=0.146 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139 (311)
Q Consensus 60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~ 139 (311)
...-.+.+.+.|.|.|-|=. + +++.+.+...++.+++. +..+.+-+........+.+.+.++++
T Consensus 99 v~~~v~~a~~~Gid~~rifd--~-------------lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~ 162 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVFD--A-------------MNDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAK 162 (593)
T ss_pred HHHHHHHHHhcCCCEEEEee--e-------------CCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHH
Confidence 34445667788999977742 2 35567778888888775 44433333321222334557889999
Q ss_pred HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC----CCCHHHHHHHHhhcCEEEE--
Q psy2386 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG----IKTKKEIDLHLNYIDGVML-- 213 (311)
Q Consensus 140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg----I~s~~da~~~l~~adgVmi-- 213 (311)
.++++|++.|.+-.-.+ ... |..-.+.++++++.+ ++||-.-+- .....-+..+-.+||.|-.
T Consensus 163 ~l~~~Gad~i~i~Dt~G---~l~-------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai 231 (593)
T PRK14040 163 QLEDMGVDSLCIKDMAG---LLK-------PYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAI 231 (593)
T ss_pred HHHHcCCCEEEECCCCC---CcC-------HHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEecc
Confidence 99999999998854321 111 123467889999888 788865442 2222222222223554432
Q ss_pred ---ehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc--HHH
Q psy2386 214 ---GREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS--NKF 286 (311)
Q Consensus 214 ---gRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~--~~~ 286 (311)
|.+ .+||.+-.-+. .+...+. ....+. +.+..+.+|+..... |... ...... ...-|.+.+||. +.+
T Consensus 232 ~glG~~-~Gn~~le~vv~-~L~~~~~-~~gidl-~~l~~is~~~~~v~~~Y~~~~~~~~~~--~~~v~~~e~PGG~~Snl 305 (593)
T PRK14040 232 SSMSMT-YGHSATETLVA-TLEGTER-DTGLDI-LKLEEIAAYFREVRKKYAKFEGQLKGV--DSRILVAQVPGGMLTNM 305 (593)
T ss_pred cccccc-ccchhHHHHHH-HHHhcCC-CcCCCH-HHHHHHHHHHHHHHHHhccCCcccccC--cccEEEEcCCCchHHHH
Confidence 333 47777554332 2222111 122343 456666666665544 3210 011111 112256789999 899
Q ss_pred HHHHhCCCCCCCChHHHHHHh
Q psy2386 287 KQILSKPNLLTIDNFQFFLNT 307 (311)
Q Consensus 287 r~~l~~~~~~~~~~~~~l~~~ 307 (311)
+..+.+..... ...++|+++
T Consensus 306 ~~ql~~~g~~~-~~~evl~e~ 325 (593)
T PRK14040 306 ESQLKEQGAAD-KLDEVLAEI 325 (593)
T ss_pred HHHHHHCCCHH-HHHHHHHHH
Confidence 99998888766 677777665
No 353
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.54 E-value=0.58 Score=43.45 Aligned_cols=140 Identities=15% Similarity=0.190 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCCEEEecc-------CCCccccccCcccCcccC-----Ch---HHHHHHHHHHhccccceeEEEEeccCC
Q psy2386 62 KSAKIIQKWGYDEINLNC-------GCPSNRVQNGFFGAILMT-----KP---LLVSDCIKAMRDSVEIDITVKHRIGID 126 (311)
Q Consensus 62 ~aa~~~~~~g~d~IdiN~-------gCP~~~v~~~~~G~~Ll~-----~~---~~~~~iv~~v~~~~~~pvsvKiR~g~~ 126 (311)
+.++.+.+.|+.+|.+-- |-|.++..+.. .++++ ++ ..+.++.... +..+.|+.+-+.- .+
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~~g~~~~g~~~~~~~~~~~~-~~~~~p~i~si~g-~~ 102 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAIGLQNPGVDAFIEEELPWL-EEFDTPIIANVAG-ST 102 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC--CceeecCCCCCcCHHHHHHHHHHHH-hccCCcEEEEecc-CC
Confidence 344556678899988853 34444443322 22332 32 3344444433 3347898887752 22
Q ss_pred CCCcHHHHHHHHHHHHHcC-CCEEEEecCccc-cc-cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE--ecCCCCHHHH
Q psy2386 127 DINSYDFVRDFVGTVSSAG-CRTFIVHARNAF-LK-KLNPKQNRKIPILKYNFVYNLKKDFPELEIII--NGGIKTKKEI 201 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~-~~-G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~--nGgI~s~~da 201 (311)
.+++.+.++.++++| +|+|.++.--.. .. |+ .-...+..-++.++.+++.+ ++||+. +.++.+..++
T Consensus 103 ----~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~---~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~ 174 (301)
T PRK07259 103 ----EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGM---AFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEI 174 (301)
T ss_pred ----HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcc---ccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHH
Confidence 346789999999999 999988421100 11 11 11111223467788888887 789875 4455555555
Q ss_pred HHHHhh--cCEEEE
Q psy2386 202 DLHLNY--IDGVML 213 (311)
Q Consensus 202 ~~~l~~--adgVmi 213 (311)
.+.++. +|+|.+
T Consensus 175 a~~l~~~G~d~i~~ 188 (301)
T PRK07259 175 AKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHcCCCEEEE
Confidence 555544 898865
No 354
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.52 E-value=1.9 Score=41.05 Aligned_cols=103 Identities=7% Similarity=0.130 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-cc-CC-------C----------CCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-ID-------D----------INSYDFVRDFVGTVSSAGCRTFIVHARNA 156 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~-------~----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~ 156 (311)
.+|-+...++++.... .+++|-.-+- +| .. + ...+-+..+..+.+++.|+|.|.|.=.|.
T Consensus 119 eENI~~Tkevve~Ah~-~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~ 197 (347)
T PRK09196 119 EYNVDVTRKVVEMAHA-CGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTS 197 (347)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccc
Confidence 4466677777776644 3666654442 11 11 0 00011244555666889999997543331
Q ss_pred ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
-+-|.+......+..||+.+++|++.++++|++.-|+=..++|
T Consensus 198 -HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~ 240 (347)
T PRK09196 198 -HGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQE 240 (347)
T ss_pred -cCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHH
Confidence 0111110000112379999999999985699998887655443
No 355
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.51 E-value=0.87 Score=40.22 Aligned_cols=179 Identities=9% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHhCCC--cEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec
Q psy2386 2 NLTDRHCRMFHRQITRY--SWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN 78 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~--~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN 78 (311)
|+|...==..+.+.|+. ++.|-+- |.+.+- ..-.++...-+. .+++.=+...+++++. +++.+.+.|.|.||
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~-SpR~Vs~~~a~~i~~~v~~-~~~VgVf~n~~~~~i~---~i~~~~~ld~VQlH 82 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVSPEQAREIASAVPK-VKVVGVFVNESIEEIL---EIAEELGLDAVQLH 82 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCCHHHHHHHHHhCCC-CCEEEEECCCCHHHHH---HHHHhcCCCEEEEC
Confidence 44555545556667642 2333332 222221 111223322222 3333333455666665 44557789999999
Q ss_pred cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158 (311)
Q Consensus 79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~ 158 (311)
| -.+++.+. .+++..++||.=-++.....+ .........-++.+.+.......
T Consensus 83 -------------G---~e~~~~~~----~l~~~~~~~v~kai~v~~~~~-------~~~~~~~~~~~d~~LlDa~~~~~ 135 (208)
T COG0135 83 -------------G---DEDPEYID----QLKEELGVPVIKAISVSEEGD-------LELAAREEGPVDAILLDAKVPGL 135 (208)
T ss_pred -------------C---CCCHHHHH----HHHhhcCCceEEEEEeCCccc-------hhhhhhccCCccEEEEcCCCCCC
Confidence 1 14566644 455555778766666643221 11233345558888887665433
Q ss_pred ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-c-CEEEEehhhhhCCc
Q psy2386 159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-I-DGVMLGREAYKNPF 222 (311)
Q Consensus 159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-a-dgVmigRa~l~~P~ 222 (311)
.|-+|. ..||+.+... .. ..|++..||++ ++.+.+.++. + .||=+.+|.=.+|-
T Consensus 136 ~GGtG~------~fDW~~l~~~--~~-~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG 191 (208)
T COG0135 136 PGGTGQ------TFDWNLLPKL--RL-SKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG 191 (208)
T ss_pred CCCCCc------EECHHHhccc--cc-cCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCCC
Confidence 444443 4799988776 23 57899999996 7899999887 6 99999999977774
No 356
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.51 E-value=0.4 Score=44.39 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=70.2
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC---C--c--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI---N--S--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~---~--~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~ 165 (311)
+.+|-+...++++..+. .+++|-.-+- +| ..+. . . +-+..+..+.+++.|+|.|.|.=.|. -+.|.+
T Consensus 110 ~eeNi~~T~~vv~~Ah~-~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~-HG~y~~-- 185 (284)
T PRK12857 110 LEENIALTKKVVEIAHA-VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTA-HGPYKG-- 185 (284)
T ss_pred HHHHHHHHHHHHHHHHH-cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCcc-ccccCC--
Confidence 34566777777777654 3555544332 22 1111 0 0 11233444555788999998754442 111222
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhh
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~ 217 (311)
.|..||+.+++|++.+ ++|++.-||=..++ +++++.+. +.-|=|++.+
T Consensus 186 ---~p~Ld~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~ 235 (284)
T PRK12857 186 ---EPKLDFDRLAKIKELV-NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNI 235 (284)
T ss_pred ---CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 2458999999999998 79999888766554 45566655 7777788776
No 357
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.50 E-value=0.27 Score=45.42 Aligned_cols=127 Identities=15% Similarity=0.101 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+| +..|-...-..+.=.++++.+.+.+ .+||.+-+- .. +.+
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~----~~-s~~ 80 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVV----------GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG----SN-ATE 80 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------ccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC----Cc-cHH
Confidence 367888888898888999999886 1223333334444455556555544 367766432 11 234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-E-----ecCCCCHHHHHHHHh
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-I-----NGGIKTKKEIDLHLN 206 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~-----nGgI~s~~da~~~l~ 206 (311)
+.+++++.+++.|+|++.+.+-. +..++ ...-+++.+++.+.+ ++||+ . .|---|++.+.++.+
T Consensus 81 ~~i~~a~~a~~~Gad~v~v~pP~--y~~~~-------~~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLVVTPY--YNKPT-------QEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCc--CCCCC-------HHHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 67899999999999999886543 11111 011245566677666 67765 2 344455666666653
No 358
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.47 E-value=0.53 Score=44.63 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=92.4
Q ss_pred CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC----------CCccccccCcccCcccCChHHHHHHHHHHhcc
Q psy2386 43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG----------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS 112 (311)
Q Consensus 43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g----------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~ 112 (311)
|-..|...|=.| .+.+..-.+.+++.|...+-==+. |+.- .-||..++|.+++.++- .
T Consensus 131 pRTsp~sf~G~g--~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd~l-----qIgAr~~~N~~LL~~va-----~ 198 (335)
T PRK08673 131 PRTSPYSFQGLG--EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVDIL-----QIGARNMQNFDLLKEVG-----K 198 (335)
T ss_pred CCCCCccccccc--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCCeE-----EECcccccCHHHHHHHH-----c
Confidence 444555555555 555666666677777654322111 4433 36888999999877654 2
Q ss_pred ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE-EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386 113 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII 191 (311)
Q Consensus 113 ~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~ 191 (311)
+++||.+|--..-+ .+++...++.+...|...++ +|..+..+.++. ...+|+..+..+++.. ++||++
T Consensus 199 ~~kPViLk~G~~~t----i~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~------~~~ldl~ai~~lk~~~-~lPVi~ 267 (335)
T PRK08673 199 TNKPVLLKRGMSAT----IEEWLMAAEYILAEGNPNVILCERGIRTFETAT------RNTLDLSAVPVIKKLT-HLPVIV 267 (335)
T ss_pred CCCcEEEeCCCCCC----HHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcC------hhhhhHHHHHHHHHhc-CCCEEE
Confidence 58999999665322 33566777888889987555 453232232221 2236889999999887 799987
Q ss_pred ec----CCCC--HHHHHHHHhh-cCEEEEeh
Q psy2386 192 NG----GIKT--KKEIDLHLNY-IDGVMLGR 215 (311)
Q Consensus 192 nG----gI~s--~~da~~~l~~-adgVmigR 215 (311)
.- |.+. +.-+...... |||+||=+
T Consensus 268 d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 268 DPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred eCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 53 3322 2334444444 99999973
No 359
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.46 E-value=0.06 Score=53.49 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..+.++.|.++|++.|.+..-.+ .+ ..-++.|++|++.+|+++|+ .|+|.|.+.++.+++. ||+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~----~~--------~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHG----HQ--------EKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCC----cc--------HHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEE
Confidence 356889999999999998854332 11 12468899999998877665 5899999999999986 9998
Q ss_pred EEeh
Q psy2386 212 MLGR 215 (311)
Q Consensus 212 migR 215 (311)
-+|=
T Consensus 294 ~vgi 297 (479)
T PRK07807 294 KVGV 297 (479)
T ss_pred EECc
Confidence 7543
No 360
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.43 E-value=0.37 Score=44.48 Aligned_cols=84 Identities=10% Similarity=0.118 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~ 133 (311)
|.+.+.+-++.+.+.|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+-. . +.++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~--~---st~~ 84 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA--N---STEE 84 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES--S---SHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc--h---hHHH
Confidence 678899999988899999999872 223333333444455666665544 5788775443 1 2346
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q psy2386 134 VRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~R 154 (311)
.+++++.+++.|+|++.+..-
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHhhcCceEEEEecc
Confidence 899999999999999987643
No 361
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.43 E-value=0.054 Score=54.00 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..+.++.+.++|++.|++..-..... --++.++.+++..|++||++ |+|.|.+++..+.+. ||+|-
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~------------~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSE------------GVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcch------------hHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 36889999999999998742211000 13577899998887899888 999999999999986 99998
Q ss_pred Ee
Q psy2386 213 LG 214 (311)
Q Consensus 213 ig 214 (311)
+|
T Consensus 296 vg 297 (486)
T PRK05567 296 VG 297 (486)
T ss_pred EC
Confidence 75
No 362
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.41 E-value=0.23 Score=45.60 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+-+..+.+.|+|+|.+..- ..+.++++.+..+ .+|+.+.||| +++.+.++.+. +|++.+
T Consensus 189 eea~~A~~~gaDyI~ld~~------------------~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 189 EEAEEAAEAGADIIMLDNM------------------KPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISS 249 (265)
T ss_pred HHHHHHHHcCCCEEEECCC------------------CHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEe
Confidence 3466678999999977432 2355666665442 3899999999 58999999987 999999
Q ss_pred eh
Q psy2386 214 GR 215 (311)
Q Consensus 214 gR 215 (311)
|.
T Consensus 250 ga 251 (265)
T TIGR00078 250 GA 251 (265)
T ss_pred CH
Confidence 54
No 363
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.41 E-value=2 Score=39.63 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=94.1
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.....|+++++++.+.++..+.|+.++++|+|+|-+-. |. | ...+++-+.+-.+++.+++++||.+=-
T Consensus 67 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~-------~---~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 67 VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PY-------Y---NKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--Cc-------C---CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 44567999999999999999999999999999999842 32 1 112456677777888877889988753
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKK 199 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~ 199 (311)
-.+..... . ..++++.|.+.+ +-++.-. + .|...+.++.+..++ +.| .+|.= .
T Consensus 135 ~P~~~g~~-l--~~~~~~~L~~~p~v~giK~s---------~---------~d~~~~~~~~~~~~~~~~v-~~G~d---~ 189 (292)
T PRK03170 135 VPGRTGVD-I--LPETVARLAEHPNIVGIKEA---------T---------GDLERVSELIELVPDDFAV-YSGDD---A 189 (292)
T ss_pred CccccCCC-C--CHHHHHHHHcCCCEEEEEEC---------C---------CCHHHHHHHHHhCCCCeEE-EECCh---H
Confidence 32211111 1 146667775432 2222111 0 255666666655433 333 34421 1
Q ss_pred HHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 200 EIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 200 da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
.+...+. +++|++.|.+.+ -|.++.++.+.+..
T Consensus 190 ~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~~ 223 (292)
T PRK03170 190 LALPFLALGGVGVISVAANV-APKEMAEMCDAALA 223 (292)
T ss_pred hHHHHHHcCCCEEEEhHHhh-hHHHHHHHHHHHHC
Confidence 1223333 499999988763 37777777766543
No 364
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.39 E-value=2.2 Score=39.38 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=94.2
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK 120 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK 120 (311)
.....|+++++++.+.++..+.|+.+++.|+|+|-+- .|... --+.+-+.+-.+.+.+++ ++||.+=
T Consensus 67 ~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~--~P~y~----------~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 67 AKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI--TPFYY----------KFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred hCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCC----------CCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456799999999999999999999999999999874 34321 124566778888888888 8999884
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTK 198 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~ 198 (311)
--.+....+ . ..+++.+|.+.+ +-+|.... .|+..+.++.+..+ ++.|+...|-
T Consensus 135 n~P~~tg~~-l--~~~~~~~L~~~pnivgiK~s~------------------~d~~~~~~~~~~~~~~~~v~~G~d~--- 190 (288)
T cd00954 135 HIPALTGVN-L--TLEQFLELFEIPNVIGVKFTA------------------TDLYDLERIRAASPEDKLVLNGFDE--- 190 (288)
T ss_pred eCccccCCC-C--CHHHHHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhCCCCcEEEEechH---
Confidence 222111111 1 245666666532 22221111 25666667766654 4444433221
Q ss_pred HHHHHHH-hhcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 199 KEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 199 ~da~~~l-~~adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
.+...+ .+++|.+.|-+.+ -|..+.++.+.+..
T Consensus 191 -~~~~~~~~G~~G~i~~~~n~-~P~~~~~l~~~~~~ 224 (288)
T cd00954 191 -MLLSALALGADGAIGSTYNV-NGKRYRKIFEAFNA 224 (288)
T ss_pred -HHHHHHHcCCCEEEeChhhh-CHHHHHHHHHHHHc
Confidence 122233 3499998886554 47777777665543
No 365
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=95.39 E-value=0.47 Score=44.06 Aligned_cols=118 Identities=15% Similarity=0.271 Sum_probs=71.4
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC--------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI--------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~--------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~ 165 (311)
.+|-+...++++-.+. .+++|-.-+- +| .++. ..+-+..+..+.+++.|+|.|.|.=.|. -+.|.+.
T Consensus 110 eeNi~~T~~vv~~ah~-~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~-HG~y~~~- 186 (287)
T PF01116_consen 110 EENIAITREVVEYAHA-YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTA-HGMYKGG- 186 (287)
T ss_dssp HHHHHHHHHHHHHHHH-TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSB-SSSBSSS-
T ss_pred HHHHHHHHHHHHhhhh-hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcc-ccccCCC-
Confidence 4556677777776665 3666655442 12 1110 1111334555666899999998754442 1222221
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhhh
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~l 218 (311)
..|..|++.+++|++.++++|++.-||=..++ ++++++.. +.-|=+++.+.
T Consensus 187 --~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 187 --KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp --SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHH
T ss_pred --CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHH
Confidence 23457999999999997569999999887766 66777765 77788887764
No 366
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.37 E-value=0.59 Score=43.47 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCEEEeccCCCcccc--ccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRV--QNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v--~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~ 140 (311)
.|++++++||++|=+--.+ .... ..+ ..+ -..+.+.+.++.|.+.+++||+|-+-.|+-+.. +..+.++.
T Consensus 27 SAri~e~aGf~ai~~ss~~-va~slG~pD---~g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~v~~tV~~ 98 (290)
T TIGR02321 27 VAKLAEQAGFGGIWGSGFE-LSASYAVPD---ANI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---NVHYVVPQ 98 (290)
T ss_pred HHHHHHHcCCCEEEECHHH-HHHHCCCCC---ccc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHHHH
Confidence 5788899999998875211 1100 011 112 245667788888888899999999999986643 35677999
Q ss_pred HHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCcH-HHHHHHH---HhCCCCeEEEe--cCCC----CHHHHHHHH----
Q psy2386 141 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKY-NFVYNLK---KDFPELEIIIN--GGIK----TKKEIDLHL---- 205 (311)
Q Consensus 141 l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~~-~~i~~i~---~~~~~ipvi~n--GgI~----s~~da~~~l---- 205 (311)
++++|+..|.+-.... ...|+... ...+..+. +++.+|+ +...+.+++.| =|.. ..+++.+-.
T Consensus 99 ~~~aGvagi~IEDq~~pk~cg~~~~--g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~ 176 (290)
T TIGR02321 99 YEAAGASAIVMEDKTFPKDTSLRTD--GRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYE 176 (290)
T ss_pred HHHcCCeEEEEeCCCCCcccccccC--CCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHH
Confidence 9999999999965321 01121100 00111222 3344444 32212344444 3543 234554333
Q ss_pred hh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 206 NY-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 206 ~~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
+. ||+|++- +...++.-+.++.+.+
T Consensus 177 eAGAD~ifv~-~~~~~~~ei~~~~~~~ 202 (290)
T TIGR02321 177 EAGADAILIH-SRQKTPDEILAFVKSW 202 (290)
T ss_pred HcCCCEEEec-CCCCCHHHHHHHHHhc
Confidence 22 9999993 3346666666666543
No 367
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.36 E-value=0.95 Score=42.38 Aligned_cols=100 Identities=11% Similarity=0.156 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-----C--cHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCCc
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-----N--SYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQ 165 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-----~--~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~ 165 (311)
.+|-+...++++-.+. .+++|-.-+- +| ..+. . .+-+..+..+.+++.|+|.|.|.=.|. .| |..+
T Consensus 111 eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~--HG~Yk~~- 186 (307)
T PRK05835 111 EENLELTSKVVKMAHN-AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTS--HGAFKFK- 186 (307)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCcc--ccccCCC-
Confidence 4566677777776654 3555544332 21 1111 0 011234445555788999998754442 12 1100
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID 202 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~ 202 (311)
..|..||+.+++|++.+ ++|++.-|+=..+++..
T Consensus 187 --~~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e~~ 220 (307)
T PRK05835 187 --GEPKLDFERLQEVKRLT-NIPLVLHGASAIPDDVR 220 (307)
T ss_pred --CCCccCHHHHHHHHHHh-CCCEEEeCCCCCchHHh
Confidence 12458999999999998 89999999888888533
No 368
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.35 E-value=0.45 Score=43.69 Aligned_cols=139 Identities=13% Similarity=0.105 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCCEEE-ec----------cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 57 PKKLAKSAKIIQKWGYDEIN-LN----------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~Id-iN----------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
.+.+....+.+++.|...+- +. . |+.-+ -||..+++.+++.++ ...++||.+|.-..-
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k-----Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~ 145 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQ-----IGSRNMQNFELLKEV-----GKTKKPILLKRGMSA 145 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEE-----ECcccccCHHHHHHH-----hcCCCcEEEeCCCCC
Confidence 67777777888888865432 21 1 44433 688889998876655 236899999966432
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCC-----H
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKT-----K 198 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s-----~ 198 (311)
+ .+++...++.+.+.|...+++ |.......+|. ...+|+..+..+++.. ++||+.. .-..+ +
T Consensus 146 s----~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~------~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~ 214 (266)
T PRK13398 146 T----LEEWLYAAEYIMSEGNENVVLCERGIRTFETYT------RNTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVI 214 (266)
T ss_pred C----HHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC------HHHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHH
Confidence 2 335667778888899865554 43221122322 2236888888888887 7999983 43333 4
Q ss_pred HHHHHHHhh-cCEEEEehhh
Q psy2386 199 KEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 199 ~da~~~l~~-adgVmigRa~ 217 (311)
..+...+.. |||+||=+=.
T Consensus 215 ~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 215 PMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred HHHHHHHHcCCCEEEEeccC
Confidence 444444444 9999987443
No 369
>PRK15063 isocitrate lyase; Provisional
Probab=95.31 E-value=0.65 Score=45.20 Aligned_cols=131 Identities=8% Similarity=0.006 Sum_probs=86.8
Q ss_pred CCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeEE
Q psy2386 46 HPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDITV 119 (311)
Q Consensus 46 ~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvsv 119 (311)
.|+++=+ +|+.++ ..+.++...++|+.+|.|-=..+.+|.+....|-.|....+.+.+|.. ++.+ .+.|+.+
T Consensus 147 ~PIiADaDtGfGg~~n-v~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~A-Ar~A~d~~g~~~vI 224 (428)
T PRK15063 147 APIVADAEAGFGGVLN-AFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVA-ARLAADVMGVPTLV 224 (428)
T ss_pred CCeEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHH-HHHHHHhcCCCeEE
Confidence 7999988 355554 788889999999999999766665555543333335544455555544 4432 3678777
Q ss_pred EEeccCCC----------------------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc
Q psy2386 120 KHRIGIDD----------------------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 171 (311)
Q Consensus 120 KiR~g~~~----------------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~ 171 (311)
=-|..-.. ....++.++-+..+.+ |+|.|-+++.+
T Consensus 225 iARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~---------------- 287 (428)
T PRK15063 225 IARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETST---------------- 287 (428)
T ss_pred EEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCC----------------
Confidence 67764311 0235567777888878 99999887553
Q ss_pred CcHHHHHHHHHhCCC-Ce--EEEecCC
Q psy2386 172 LKYNFVYNLKKDFPE-LE--IIINGGI 195 (311)
Q Consensus 172 ~~~~~i~~i~~~~~~-ip--vi~nGgI 195 (311)
.+.+.++++.+.++. +| +.++|.-
T Consensus 288 ~d~ee~~~fa~~v~~~~P~~~layn~s 314 (428)
T PRK15063 288 PDLEEARRFAEAIHAKFPGKLLAYNCS 314 (428)
T ss_pred CCHHHHHHHHHhhcccCccceeecCCC
Confidence 378889998887621 37 7777743
No 370
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.31 E-value=2.4 Score=39.29 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=71.0
Q ss_pred ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386 95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165 (311)
Q Consensus 95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~ 165 (311)
+.+|-+...++++..+.. ++.|-.-+- +| ..++ ..+-+..+..+.+++.|+|.+.|.=.|. -+.|.+
T Consensus 110 ~eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~-HG~y~~-- 185 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTA-HGLYKG-- 185 (284)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcc-ccccCC--
Confidence 345667777777776653 555544332 22 1111 0011234445555779999998754442 111211
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhhh
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~l 218 (311)
.|..||+.+++|++.+ ++|++.-||=..++ +++++++. +.-|=|++.+-
T Consensus 186 ---~p~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~ 236 (284)
T PRK12737 186 ---EPKLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKVNVATELK 236 (284)
T ss_pred ---CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence 2458999999999988 79999888766554 45666665 88888888763
No 371
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.31 E-value=0.42 Score=44.34 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386 55 NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY 131 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~ 131 (311)
=|.+.+.+-.+.+.+.| +++|=+| +..|-...-..+.-.++++.+++.+ .+||.+-+-. . +.
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~---~t 82 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS--V---NL 82 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEEC----------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC--C---CH
Confidence 37788888888888899 9999887 2234434445555566777666655 4677764432 1 12
Q ss_pred HHHHHHHHHHHHcCCCEEEEec
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHA 153 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~ 153 (311)
++.+++++.+++.|+|++.+..
T Consensus 83 ~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 83 KEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHHHhCCCEEEEeC
Confidence 3578999999999999998854
No 372
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=95.30 E-value=0.12 Score=45.74 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc-cccceeEEEEeccCCCCCcHHHHHH
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRIGIDDINSYDFVRD 136 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvKiR~g~~~~~~~~~~~e 136 (311)
+...+-|+...+.|+|.||||++.-.|... ........+++..+++++++ ..++|+++-..- .+
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~----~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-----------~~ 83 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGAT----PVSEEEEMERLVPVLQAIREENPDVPLSIDTFN-----------PE 83 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSS----SSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-----------HH
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCC----cCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-----------HH
Confidence 445555666777899999999877444210 11122445677788888876 568999997552 34
Q ss_pred HHHHHHHcCCCEEE
Q psy2386 137 FVGTVSSAGCRTFI 150 (311)
Q Consensus 137 ~~~~l~~~G~~~it 150 (311)
.++...++|++.|.
T Consensus 84 v~~~aL~~g~~~in 97 (210)
T PF00809_consen 84 VAEAALKAGADIIN 97 (210)
T ss_dssp HHHHHHHHTSSEEE
T ss_pred HHHHHHHcCcceEE
Confidence 55666666888763
No 373
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.25 E-value=2.5 Score=39.15 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=72.0
Q ss_pred cccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCC
Q psy2386 94 ILMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164 (311)
Q Consensus 94 ~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~ 164 (311)
.+.+|-+...++++-.+. .+++|-.-+- +| ..+. ..+-+..+..+.+++.|+|.+.|.=.|. -+.|.+
T Consensus 109 ~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~- 185 (284)
T PRK09195 109 PFAQNISLVKEVVDFCHR-FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTA-HGMYKG- 185 (284)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcc-ccccCC-
Confidence 345567777777777665 3665544332 22 1111 0011233444555788999998754442 111211
Q ss_pred cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhhh
Q psy2386 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREAY 218 (311)
Q Consensus 165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~l 218 (311)
.|..||+.+++|++.+ ++|++.-||=..+ ++++++.+. +.-|=|++.+.
T Consensus 186 ----~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 186 ----EPKLDFDRLENIRQWV-NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred ----CCcCCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 2358999999999998 7999988865544 556677765 88888888874
No 374
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=95.19 E-value=0.51 Score=46.52 Aligned_cols=121 Identities=11% Similarity=0.136 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHH-HHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHH
Q psy2386 56 EPKKLAKSAKII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 56 ~~~~~~~aa~~~-~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~ 133 (311)
+|+.+++-|+.. .+.||..+-|-.|-+ +++.-.+.++++|+++ ++.+.|-..-+|+. ++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~----~~ 240 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSL----DE 240 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HH
Confidence 577776666544 446999998865421 2234456677888765 23344444444543 35
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK----YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-- 207 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~----~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-- 207 (311)
..++++.+++. +.+| |+ ..++-| ++..+++++.. ++||.+.=.+.++.++.++++.
T Consensus 241 Ai~~~~~Le~~-~~~i---------------Ee-Pv~~~d~~~~~~~la~Lr~~~-~iPIa~dEs~~~~~~~~~li~~~a 302 (441)
T TIGR03247 241 AIALCKDLKGV-LAYA---------------ED-PCGAEQGYSGREVMAEFRRAT-GLPTATNMIATDWRQMGHALQLQA 302 (441)
T ss_pred HHHHHHHhhhh-hceE---------------eC-CCCcccccchHHHHHHHHHhC-CCCEEcCCccCCHHHHHHHHHhCC
Confidence 78899999886 5543 11 112234 78889999987 7999887788999999999875
Q ss_pred cCEEEE
Q psy2386 208 IDGVML 213 (311)
Q Consensus 208 adgVmi 213 (311)
+|.++.
T Consensus 303 vdi~~~ 308 (441)
T TIGR03247 303 VDIPLA 308 (441)
T ss_pred CCEEec
Confidence 777654
No 375
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.17 E-value=0.34 Score=44.72 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+-+..+.++|+|+|.+. . ...+.++++.+.. +++|+.+.||| +++.+.++.+. +|++.+
T Consensus 200 eea~eA~~~gaD~I~LD-~-----------------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 200 DELRQALAAGADIVMLD-E-----------------LSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISI 260 (277)
T ss_pred HHHHHHHHcCCCEEEEC-C-----------------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 33566678999999662 1 2345566655543 47999999999 58999999887 999999
Q ss_pred ehhhhhCCc
Q psy2386 214 GREAYKNPF 222 (311)
Q Consensus 214 gRa~l~~P~ 222 (311)
|.-...-|+
T Consensus 261 g~lt~s~~~ 269 (277)
T PRK05742 261 GAMTKDVKA 269 (277)
T ss_pred ChhhcCCcc
Confidence 975544443
No 376
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.16 E-value=0.28 Score=45.12 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+-+..+.++|+|+|-+.. ...+.++++.+..+ ++|+.+.||| +++.+.++.+. +|++.+
T Consensus 193 eea~~A~~~gaDyI~ld~------------------~~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 193 EQLKEALEAGADIIMLDN------------------MSPEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISV 253 (268)
T ss_pred HHHHHHHHcCCCEEEECC------------------cCHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 335566789999997742 23466777776553 4999999999 58999999987 999999
Q ss_pred ehhhh
Q psy2386 214 GREAY 218 (311)
Q Consensus 214 gRa~l 218 (311)
|+-..
T Consensus 254 ~sl~~ 258 (268)
T cd01572 254 GALTH 258 (268)
T ss_pred Eeeec
Confidence 97554
No 377
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.15 E-value=0.27 Score=46.61 Aligned_cols=104 Identities=11% Similarity=0.152 Sum_probs=65.1
Q ss_pred CCCCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386 43 AEEHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 115 (311)
Q Consensus 43 ~~~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~ 115 (311)
.++-|+.+=+. |.++++..+.++.++++|+|.|++..|...........-......+-...+..+.+++.+++
T Consensus 214 G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~i 293 (338)
T cd04733 214 GPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKT 293 (338)
T ss_pred CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCC
Confidence 45668888774 67899999999999999999999998864332211000001111122335677788888899
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN 155 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt 155 (311)
||.+-=++ .. ..++.+.+++.++|.|.+ ||.
T Consensus 294 PVi~~G~i--~t------~~~a~~~l~~g~aD~V~l-gR~ 324 (338)
T cd04733 294 PLMVTGGF--RT------RAAMEQALASGAVDGIGL-ARP 324 (338)
T ss_pred CEEEeCCC--CC------HHHHHHHHHcCCCCeeee-ChH
Confidence 99885443 11 223444455556888866 554
No 378
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.14 E-value=1.9 Score=38.02 Aligned_cols=174 Identities=8% Similarity=0.101 Sum_probs=98.0
Q ss_pred CCCCHHHHHHHHHhCCCcEEEecce----eccccc-CCchhccccCCC-CCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Q psy2386 2 NLTDRHCRMFHRQITRYSWLYTEMF----TTQAIL-GNKKHCLDFNAE-EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI 75 (311)
Q Consensus 2 ~~td~~fR~l~~~~g~~~l~~temv----~a~~l~-~~~~~~l~~~~~-~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~I 75 (311)
|+|+..==.+|.+.|+. +-.|| |.+.+- .....+...-+. -.+++| +...+++.+.+. +++++.|.|
T Consensus 9 Gi~~~eda~~~~~~Gad---~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~---~~~~~~d~v 81 (210)
T PRK01222 9 GITTPEDAEAAAELGAD---AIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEI---VETVPLDLL 81 (210)
T ss_pred CCCcHHHHHHHHHcCCC---EEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHH---HHhcCCCEE
Confidence 67777777888888853 22223 122111 111122222222 233333 335677776544 558899999
Q ss_pred EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386 76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN 155 (311)
Q Consensus 76 diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt 155 (311)
.||-.. +++. ++.+++..++++.-.+++... . ++.. .... ...+|++.+...+
T Consensus 82 QLHg~e----------------~~~~----~~~l~~~~~~~iik~i~v~~~--~---~l~~-~~~~-~~~~d~~L~Ds~~ 134 (210)
T PRK01222 82 QLHGDE----------------TPEF----CRQLKRRYGLPVIKALRVRSA--G---DLEA-AAAY-YGDADGLLLDAYV 134 (210)
T ss_pred EECCCC----------------CHHH----HHHHHhhcCCcEEEEEecCCH--H---HHHH-HHhh-hccCCEEEEcCCC
Confidence 998322 2333 445555556776555555311 1 1111 1111 2358899888665
Q ss_pred cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCC
Q psy2386 156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNP 221 (311)
Q Consensus 156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P 221 (311)
. ..|-+|. ..||+.+. +.. ..|++..|||. ++.+.+++.. .+||=+.+|+=..|
T Consensus 135 ~-~~GGtG~------~~dw~~l~---~~~-~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 135 G-LPGGTGK------TFDWSLLP---AGL-AKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAP 190 (210)
T ss_pred C-CCCCCCC------ccchHHhh---hcc-CCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCC
Confidence 3 2233343 36898772 233 46999999996 6788888864 88888888875434
No 379
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.11 E-value=0.43 Score=43.05 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=84.0
Q ss_pred HHHHHHHcCCCEEEec-------cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 63 SAKIIQKWGYDEINLN-------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
.|++++++||+.|=+- .|-|-. .+ -..+.+.+.++.|.+.+++||+|-+..|+-+. .....
T Consensus 21 SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~---------~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~--~~~v~ 88 (238)
T PF13714_consen 21 SARLAERAGFDAIATSGAGVAASLGYPDG---------GL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGND--PENVA 88 (238)
T ss_dssp HHHHHHHTT-SEEEEHHHHHHHHTTS-SS---------S--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSS--HHHHH
T ss_pred HHHHHHHcCCCEEEechHHHHHHcCCCCC---------CC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCch--hHHHH
Confidence 5788999999998875 233321 12 24556678888888889999999999998662 22577
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHH---hC--CCCeEEEecCCCC--HHHHHHHHh-
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKK---DF--PELEIIINGGIKT--KKEIDLHLN- 206 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~---~~--~~ipvi~nGgI~s--~~da~~~l~- 206 (311)
+.++.++++|+..|++-.... |..++ + ..+. +++.+|+. .. +++-|++==|... .+...+.++
T Consensus 89 ~tv~~~~~aG~agi~IEDq~~---~~~~~-~----l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R 160 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQRC---GHGGK-Q----LVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIER 160 (238)
T ss_dssp HHHHHHHHCT-SEEEEESBST---TTSTT------B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeecccc---CCCCC-c----eeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHH
Confidence 889999999999999975411 11111 1 1122 34444443 22 3566666667643 333333332
Q ss_pred ------h-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386 207 ------Y-IDGVMLGREAYKNPFLMSNFDLNY 231 (311)
Q Consensus 207 ------~-adgVmigRa~l~~P~i~~~~~~~~ 231 (311)
. ||+|++=-. .+..-++++.+.+
T Consensus 161 ~~aY~eAGAD~ifi~~~--~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 161 AKAYAEAGADMIFIPGL--QSEEEIERIVKAV 190 (238)
T ss_dssp HHHHHHTT-SEEEETTS--SSHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCC--CCHHHHHHHHHhc
Confidence 2 999997421 3333344554443
No 380
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.10 E-value=0.28 Score=45.52 Aligned_cols=126 Identities=6% Similarity=0.057 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386 55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY 131 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~ 131 (311)
=|.+.+.+-++.+.+ .|+++|=++- ..|-...-..+.-.++++.+++.+ .+||.+-+- .. +.
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg--~~---~t 85 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG--SV---NT 85 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC--CC---CH
Confidence 467889999999988 9999998872 233333334444456666666655 367776432 11 23
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL 205 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l 205 (311)
++.+++++.+++.|+|++.+.+-. +...+ ...-+++.+++.+++ ++||+ .| |---+++.+.++.
T Consensus 86 ~~ai~~a~~a~~~Gad~v~v~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPv~iYn~P~~tg~~l~~~~l~~L~ 155 (293)
T PRK04147 86 AEAQELAKYATELGYDAISAVTPF--YYPFS-------FEEICDYYREIIDSA-DNPMIVYNIPALTGVNLSLDQFNELF 155 (293)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCc--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCchhhccCCCHHHHHHHh
Confidence 367899999999999999987542 11111 011245667777776 57764 43 3334566666655
No 381
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.10 E-value=0.22 Score=45.91 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 215 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR 215 (311)
+..+.++|+|+|-+..-.. .+. +.++.+++..|++|+++.||| +++.+.++.+. +|+|++|.
T Consensus 196 a~~A~~~gaD~I~ld~~~p---------------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 196 ALAAAEAGADILQLDKFSP---------------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTSA 259 (272)
T ss_pred HHHHHHcCCCEEEECCCCH---------------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEECh
Confidence 4445689999998754321 122 233334444357999999999 88999999987 99996665
Q ss_pred hh
Q psy2386 216 EA 217 (311)
Q Consensus 216 a~ 217 (311)
-.
T Consensus 260 i~ 261 (272)
T cd01573 260 PY 261 (272)
T ss_pred hh
Confidence 43
No 382
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.06 E-value=0.32 Score=46.43 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=41.3
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE----ehhhhhCCc
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML----GREAYKNPF 222 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi----gRa~l~~P~ 222 (311)
+..+|+.++++++.. ++||+.-| |.+++|++.+.+. +|+|.+ ||.+...|.
T Consensus 206 ~~~~~~~l~~lr~~~-~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~ 261 (351)
T cd04737 206 QKLSPADIEFIAKIS-GLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPA 261 (351)
T ss_pred CCCCHHHHHHHHHHh-CCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCch
Confidence 346899999999987 79999885 8999999999987 999998 455444443
No 383
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.01 E-value=0.3 Score=45.12 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+-++.+.+.|+|+|.+.. ...+.++++++.. +.+|+.+.||| +++.+.++.+. +|+|.+
T Consensus 199 eea~~A~~~gaDyI~lD~------------------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 199 EQVREAVAAGADIIMFDN------------------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISL 259 (277)
T ss_pred HHHHHHHHcCCCEEEECC------------------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 335666789999997721 2346677777654 24788899999 78999999987 999999
Q ss_pred ehhhhhCCc
Q psy2386 214 GREAYKNPF 222 (311)
Q Consensus 214 gRa~l~~P~ 222 (311)
|.-...-|+
T Consensus 260 g~l~~sa~~ 268 (277)
T PRK08072 260 GFLTHSVKA 268 (277)
T ss_pred ChhhcCCcc
Confidence 975543343
No 384
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.00 E-value=0.19 Score=44.33 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=75.7
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 195 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI 195 (311)
++..=+|.- +.++..++++.+.+.|+..+-|.-|+. .-++.|+++++.+|+ -+++.|-|
T Consensus 9 ~liaVlr~~-----~~e~a~~~~~al~~~Gi~~iEit~~t~---------------~a~~~i~~l~~~~~~-~~vGAGTV 67 (204)
T TIGR01182 9 KIVPVIRID-----DVDDALPLAKALIEGGLRVLEVTLRTP---------------VALDAIRLLRKEVPD-ALIGAGTV 67 (204)
T ss_pred CEEEEEecC-----CHHHHHHHHHHHHHcCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEEEEeC
Confidence 555556742 233678999999999999999987763 246789999998864 57999999
Q ss_pred CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386 196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR 249 (311)
Q Consensus 196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
.|++++++.++. ++.++.= + -||.+.+..+++ +-...+-..|+.|+...
T Consensus 68 l~~~~a~~a~~aGA~FivsP-~--~~~~v~~~~~~~--~i~~iPG~~TptEi~~A 117 (204)
T TIGR01182 68 LNPEQLRQAVDAGAQFIVSP-G--LTPELAKHAQDH--GIPIIPGVATPSEIMLA 117 (204)
T ss_pred CCHHHHHHHHHcCCCEEECC-C--CCHHHHHHHHHc--CCcEECCCCCHHHHHHH
Confidence 999999999987 9988542 2 266666555432 11111134677776654
No 385
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=94.93 E-value=0.13 Score=51.29 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
+.+.+-|+...+.|+|.||||++...+ .++.+..+|+++++.+++||||-.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeC
Confidence 555566666667899999999776533 345789999999988789999964
No 386
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.90 E-value=0.98 Score=42.58 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=78.6
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE-E
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV-K 120 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv-K 120 (311)
+....|++ =+...|.- .|+++.++|+|.|=+. -...++ --|+-+.+--..+.+...+++|++.+..|++| -
T Consensus 31 k~~g~kiv-mlTAyD~~----sA~i~d~aGvD~ILVG--DSlgmv-~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaD 102 (332)
T PLN02424 31 YRRGEPIT-MVTAYDYP----SAVHVDSAGIDVCLVG--DSAAMV-VHGHDTTLPITLDEMLVHCRAVARGANRPLLVGD 102 (332)
T ss_pred HhCCCcEE-EEecCCHH----HHHHHHHcCCCEEEEC--CcHHHH-hcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeC
Confidence 33334443 34444433 4678889999998764 222221 12344445556778888889999988999888 7
Q ss_pred EeccCCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386 121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 190 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi 190 (311)
+-.|.... +.++.++.+.++ .+.|+++|-+-|... ...+.|+.+.+. .|||+
T Consensus 103 mPfgSY~~-s~e~av~nA~rl~~eaGa~aVKlEGg~~---------------~~~~~I~~l~~~--GIPV~ 155 (332)
T PLN02424 103 LPFGSYES-STDQAVESAVRMLKEGGMDAVKLEGGSP---------------SRVTAAKAIVEA--GIAVM 155 (332)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHhCCcEEEECCCcH---------------HHHHHHHHHHHc--CCCEE
Confidence 77763322 233556667776 679999999987631 123667777743 68888
No 387
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.88 E-value=0.42 Score=45.51 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=64.4
Q ss_pred ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------ccccCCCCc---------------------
Q psy2386 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FLKKLNPKQ--------------------- 165 (311)
Q Consensus 115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~~G~~g~~--------------------- 165 (311)
.|...-+-...|.. .+.+++++++++|+++|.+|--+. ...|++-+.
T Consensus 118 ~~~w~Qly~~~d~~----~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 193 (344)
T cd02922 118 QPLFFQLYVNKDRT----KTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMS 193 (344)
T ss_pred CcEEEEEeecCCHH----HHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHh
Confidence 56665555443322 467889999999999999883221 011221000
Q ss_pred CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
....+...|+.++++++.. ++||+.- +|.+++|+..+.+. +|+|.+.
T Consensus 194 ~~~~~~~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 194 GFIDPTLTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred hccCCCCCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 0112346899999999988 7999887 77899999999876 9999885
No 388
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.88 E-value=1.3 Score=40.70 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=76.8
Q ss_pred HHHHHHHcCCCEEEec-------cCCCccccccCcc-------cCcc-----cCC--hHHHHHHHHHHhcc-ccceeEEE
Q psy2386 63 SAKIIQKWGYDEINLN-------CGCPSNRVQNGFF-------GAIL-----MTK--PLLVSDCIKAMRDS-VEIDITVK 120 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~-------G~~L-----l~~--~~~~~~iv~~v~~~-~~~pvsvK 120 (311)
..+.+.+.|+.+|.+- .|-|.+....... -.++ +.+ ++...+-+...++. .+.|+.+-
T Consensus 25 ~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~~pvi~s 104 (289)
T cd02810 25 LIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIAS 104 (289)
T ss_pred HHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCCCeEEEE
Confidence 3455567788888874 2444443332110 0111 222 33333333334443 47898887
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCCHH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKTKK 199 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s~~ 199 (311)
++-. + .+++.+.++.++++|+|+|.++.......+ +..-...+..-.+.++++++.+ ++||+.= +...+.+
T Consensus 105 i~g~-~----~~~~~~~a~~~~~~G~d~ielN~~cP~~~~--~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~ 176 (289)
T cd02810 105 VGGS-S----KEDYVELARKIERAGAKALELNLSCPNVGG--GRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLE 176 (289)
T ss_pred eccC-C----HHHHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHH
Confidence 7642 1 235788999999999999999854321111 0000001111235677888877 7888742 3334544
Q ss_pred HHHHH---Hhh--cCEEEEe
Q psy2386 200 EIDLH---LNY--IDGVMLG 214 (311)
Q Consensus 200 da~~~---l~~--adgVmig 214 (311)
+..++ +.. +|+|.+-
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 177 DIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 44433 333 9999985
No 389
>KOG0623|consensus
Probab=94.85 E-value=0.063 Score=50.28 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV 211 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV 211 (311)
..|+.+++++.|+..|.+..-+. .|. -...|.++++-++..+ +||||++.|--+|+...+.++. ||+.
T Consensus 443 v~ELtrAcEalGAGEiLLNCiD~--DGs-------n~GyDieLv~lvkdsV-~IPVIASSGAG~P~HFeEvF~kT~adAa 512 (541)
T KOG0623|consen 443 VFELTRACEALGAGEILLNCIDC--DGS-------NKGYDIELVKLVKDSV-GIPVIASSGAGTPDHFEEVFEKTNADAA 512 (541)
T ss_pred hhhHHHHHHHhCcchheeeeecc--CCC-------CCCcchhHHHHhhccc-CCceEecCCCCCcHHHHHHHHhcCchhh
Confidence 56899999999999998876653 221 1125899999999998 8999999999999999999976 7754
No 390
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.79 E-value=0.8 Score=43.70 Aligned_cols=147 Identities=17% Similarity=0.111 Sum_probs=89.6
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC----------CCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG----------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 114 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g----------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~ 114 (311)
..|...|=.| .+.+..-.+..++.|...+-==+. |+.-+ -||..++|.+++. ++.+ ++
T Consensus 141 tsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lq-----Iga~~~~n~~LL~----~va~-t~ 208 (352)
T PRK13396 141 TSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQ-----VGARNMQNFSLLK----KVGA-QD 208 (352)
T ss_pred CCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEE-----ECcccccCHHHHH----HHHc-cC
Confidence 4454444333 566666666667777655422111 44433 5888999988754 4443 48
Q ss_pred ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE-EecCccccc-cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI-VHARNAFLK-KLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN 192 (311)
Q Consensus 115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~~~~-G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n 192 (311)
+||.+|--..-+ .+++...++.+.+.|...|+ +|..++.+. +|. ....||..+..+++.. ++|||..
T Consensus 209 kPVllk~G~~~t----~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~------~~~~dl~ai~~lk~~~-~lPVi~D 277 (352)
T PRK13396 209 KPVLLKRGMAAT----IDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT------RNTLDLSVIPVLRSLT-HLPIMID 277 (352)
T ss_pred CeEEEeCCCCCC----HHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC------CCCcCHHHHHHHHHhh-CCCEEEC
Confidence 999999655322 33567778888899986555 554333232 332 2347999999999887 7999876
Q ss_pred c----CCCC--HHHHHHHHhh-cCEEEEe
Q psy2386 193 G----GIKT--KKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 193 G----gI~s--~~da~~~l~~-adgVmig 214 (311)
- |.++ +.-+...+.. |||+||=
T Consensus 278 psH~~G~sd~~~~~a~AAva~GAdGliIE 306 (352)
T PRK13396 278 PSHGTGKSEYVPSMAMAAIAAGTDSLMIE 306 (352)
T ss_pred CcccCCcHHHHHHHHHHHHhhCCCeEEEE
Confidence 2 2222 2223333333 9999986
No 391
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.75 E-value=0.28 Score=42.97 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=69.5
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 195 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI 195 (311)
++..=+|.. + .++..++++.+.+.|+..+-|.-|+. .-++.|+++++.+|+ -+++.|.|
T Consensus 9 ~iiaVir~~-~----~~~a~~~~~al~~gGi~~iEiT~~t~---------------~a~~~I~~l~~~~p~-~~vGAGTV 67 (196)
T PF01081_consen 9 KIIAVIRGD-D----PEDAVPIAEALIEGGIRAIEITLRTP---------------NALEAIEALRKEFPD-LLVGAGTV 67 (196)
T ss_dssp SEEEEETTS-S----GGGHHHHHHHHHHTT--EEEEETTST---------------THHHHHHHHHHHHTT-SEEEEES-
T ss_pred CEEEEEEcC-C----HHHHHHHHHHHHHCCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CeeEEEec
Confidence 455556642 1 22578999999999999999988873 246889999998876 57899999
Q ss_pred CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386 196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR 249 (311)
Q Consensus 196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
.|.+++++.++. |+.++.= --||.+.+...+. +-...+-.-|+.|+...
T Consensus 68 ~~~e~a~~a~~aGA~FivSP---~~~~~v~~~~~~~--~i~~iPG~~TptEi~~A 117 (196)
T PF01081_consen 68 LTAEQAEAAIAAGAQFIVSP---GFDPEVIEYAREY--GIPYIPGVMTPTEIMQA 117 (196)
T ss_dssp -SHHHHHHHHHHT-SEEEES---S--HHHHHHHHHH--TSEEEEEESSHHHHHHH
T ss_pred cCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCcccCCcCCHHHHHHH
Confidence 999999999987 9988762 1455555544432 11111124577787654
No 392
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.74 E-value=2.5 Score=36.49 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=82.0
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEeccCC
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIGID 126 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~~ 126 (311)
+++-|=-.++++..+.++.+.+. ++.|+++ -|.- .. .| .+.++.+++. .++|+.+-.... +
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig--~~~~--~~--~g----------~~~i~~i~~~~~~~~i~~~~~v~-~ 64 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDG-VDIIEAG--TPLI--KS--EG----------MEAVRALREAFPDKIIVADLKTA-D 64 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhc-CCEEEcC--CHHH--HH--hC----------HHHHHHHHHHCCCCEEEEEEEec-c
Confidence 34445455788888888888887 9999994 2221 11 12 3556666664 477876632221 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCCHHHHHHHH
Q psy2386 127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKTKKEIDLHL 205 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s~~da~~~l 205 (311)
. . ..+++.+.++|++++++|+.... . ..-+.++.+++ . +++++.. =+..|++++.+.+
T Consensus 65 ~-~-----~~~~~~~~~aGad~i~~h~~~~~--~-----------~~~~~i~~~~~-~-g~~~~v~~~~~~t~~e~~~~~ 123 (202)
T cd04726 65 A-G-----ALEAEMAFKAGADIVTVLGAAPL--S-----------TIKKAVKAAKK-Y-GKEVQVDLIGVEDPEKRAKLL 123 (202)
T ss_pred c-c-----HHHHHHHHhcCCCEEEEEeeCCH--H-----------HHHHHHHHHHH-c-CCeEEEEEeCCCCHHHHHHHH
Confidence 1 1 24568889999999999986420 0 01234555554 3 6777663 7788999998877
Q ss_pred hh-cCEEEEe
Q psy2386 206 NY-IDGVMLG 214 (311)
Q Consensus 206 ~~-adgVmig 214 (311)
.. +|.|.++
T Consensus 124 ~~~~d~v~~~ 133 (202)
T cd04726 124 KLGVDIVILH 133 (202)
T ss_pred HCCCCEEEEc
Confidence 64 9999885
No 393
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=94.72 E-value=0.47 Score=44.79 Aligned_cols=113 Identities=9% Similarity=0.067 Sum_probs=71.4
Q ss_pred ccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC
Q psy2386 91 FGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI 169 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~ 169 (311)
.+++.+.+|+.. +-.+.+++... .|+.+-+-.......+ ..++.+.++..+++++.+|--.. +... ...
T Consensus 89 s~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~---~~~~~~~i~~~~adalel~l~~~--q~~~----~~~ 158 (326)
T cd02811 89 SQRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYG---VEEARRAVEMIEADALAIHLNPL--QEAV----QPE 158 (326)
T ss_pred CchhhccChhhh-hHHHHHHHhCCCceEEeecCccccCCCC---HHHHHHHHHhcCCCcEEEeCcch--Hhhc----CCC
Confidence 344456778866 56677777664 8887755432211112 23556666777899999985321 1100 001
Q ss_pred CcCcH----HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKY----NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~----~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgVmig 214 (311)
+.-|| +.++.+++.+ ++||+. +|.-.|.++++.+.+. +|+|.++
T Consensus 159 ~~~df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 159 GDRDFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred CCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 12245 5688888887 799986 5666889999888776 9999984
No 394
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.71 E-value=1.3 Score=42.38 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=92.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 53 GDNEPKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 53 ~g~~~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
-|-..+.+....+.+.+.|...+-= .. ||.-+ -||..+.+.+++.++ .+ +++||.+|.
T Consensus 164 ~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk-----I~s~~~~n~~LL~~~----a~-~gkPVilk~ 232 (360)
T PRK12595 164 QGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ-----IGARNMQNFELLKAA----GR-VNKPVLLKR 232 (360)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE-----ECcccccCHHHHHHH----Hc-cCCcEEEeC
Confidence 3555677777778888888655322 12 55544 588889998765544 33 589999986
Q ss_pred eccCCCCCcHHHHHHHHHHHHHcCCCEEE-EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-H
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-K 199 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~ 199 (311)
-..-+ .+++...+..+.+.|...|+ +|-.+..|.. .....+|+..+..+++.+ ++||+.+-|=... .
T Consensus 233 G~~~t----~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~------~~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r 301 (360)
T PRK12595 233 GLSAT----IEEFIYAAEYIMSQGNGQIILCERGIRTYEK------ATRNTLDISAVPILKQET-HLPVMVDVTHSTGRR 301 (360)
T ss_pred CCCCC----HHHHHHHHHHHHHCCCCCEEEECCccCCCCC------CCCCCcCHHHHHHHHHHh-CCCEEEeCCCCCcch
Confidence 64322 33567778888899986555 4522221221 111236999999999987 7999995444332 1
Q ss_pred -----HHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386 200 -----EIDLHLNY-IDGVMLGREAYKNPFL 223 (311)
Q Consensus 200 -----da~~~l~~-adgVmigRa~l~~P~i 223 (311)
-+...... |||+||=+=. ||..
T Consensus 302 ~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 302 DLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred hhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 22233333 9999998655 5543
No 395
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=94.69 E-value=1.7 Score=40.87 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=82.2
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
.|+..-+.-.+|+++.+.++...+.||..+-|-.| | +. -.+.++++++.+ | .+++|+..
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~---------------~~--d~~~v~avr~~~--~-~~~l~vDa 177 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N---------------HL--ISERMVAIRSAV--P-DATLIVDA 177 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C---------------ch--HHHHHHHHHHhC--C-CCeEEEEC
Confidence 45545555567888888777777789999988642 1 11 125577777765 2 45556532
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL 205 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l 205 (311)
...-+.++..++++.+.+.++.+|- +. .++.+++..+++. . .+||.+.=.+.++.|+.++.
T Consensus 178 N~~w~~~~A~~~~~~l~~~~i~~iE---------------qP-~~~~~~~~l~~~~--~-~~pia~dEs~~~~~d~~~~~ 238 (321)
T PRK15129 178 NESWRAEGLAARCQLLADLGVAMLE---------------QP-LPAQDDAALENFI--H-PLPICADESCHTRSSLKALK 238 (321)
T ss_pred CCCCCHHHHHHHHHHHHhcCceEEE---------------CC-CCCCcHHHHHHhc--c-CCCEecCCCCCCHHHHHHHH
Confidence 2222233567888889998888872 11 1223555444432 2 58999888899999998875
Q ss_pred hhcCEEEEe
Q psy2386 206 NYIDGVMLG 214 (311)
Q Consensus 206 ~~adgVmig 214 (311)
..+|+|.+=
T Consensus 239 ~~~d~v~~k 247 (321)
T PRK15129 239 GRYEMVNIK 247 (321)
T ss_pred hhCCEEEeC
Confidence 348877765
No 396
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=94.66 E-value=1.8 Score=41.30 Aligned_cols=103 Identities=11% Similarity=0.139 Sum_probs=56.8
Q ss_pred cCChHHHHHHHHHHhccccceeEEEEe-ccC-C-------C----------CCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386 96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IGI-D-------D----------INSYDFVRDFVGTVSSAGCRTFIVHARNA 156 (311)
Q Consensus 96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~-~-------~----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~ 156 (311)
.+|-+...++++..+. .+++|-.-+- +|- . + +..+-+..+..+.+++.|+|.|.+.=.|.
T Consensus 119 eeNI~~Trevve~Ah~-~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~ 197 (347)
T PRK13399 119 DYNVDVTRRVTEMAHA-VGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTS 197 (347)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccc
Confidence 3456677777766544 3666655442 110 0 1 00011234445555778999997643331
Q ss_pred ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
-+-|.++.....+..+|+.+++|++.++++|++.-|+=..+++
T Consensus 198 -HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~ 240 (347)
T PRK13399 198 -HGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQE 240 (347)
T ss_pred -cCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHH
Confidence 0111110000112379999999999985699999998776633
No 397
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.62 E-value=0.39 Score=44.71 Aligned_cols=84 Identities=15% Similarity=0.274 Sum_probs=62.8
Q ss_pred cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
..|+.+.+-...+. +...+.++.+++.|++.|.+|.-... .| .+ ..|+.++++++.+ ++||+.-
T Consensus 115 ~~~~~~ql~~~~~~----~~~~~~i~~~~~~g~~~i~l~~~~p~-~~-----~~----~~~~~i~~l~~~~-~~pvivK- 178 (299)
T cd02809 115 PGPRWFQLYVPRDR----EITEDLLRRAEAAGYKALVLTVDTPV-LG-----RR----LTWDDLAWLRSQW-KGPLILK- 178 (299)
T ss_pred CCCeEEEEeecCCH----HHHHHHHHHHHHcCCCEEEEecCCCC-CC-----CC----CCHHHHHHHHHhc-CCCEEEe-
Confidence 36888877653322 24567788889999999999865431 11 11 4789999999988 6998876
Q ss_pred CCCCHHHHHHHHhh-cCEEEE
Q psy2386 194 GIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 194 gI~s~~da~~~l~~-adgVmi 213 (311)
++.|+++++.+.+. +|+|.+
T Consensus 179 ~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 179 GILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred ecCCHHHHHHHHHCCCCEEEE
Confidence 47999999998876 999988
No 398
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=94.58 E-value=0.87 Score=40.97 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC-----CcHH
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI-----NSYD 132 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~-----~~~~ 132 (311)
..+.+-.+.|.+.||+.|||+-|. -=+ ..+.-.+.++.+++. -+.||--+|..+. .+.+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~------------~~i-~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~ 134 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGS------------MEI-SLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTPD 134 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCc------------cCC-CHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCHH
Confidence 345555567889999999998442 212 233444566666543 2333333332221 2234
Q ss_pred HHHHHHHHHHHcCCCEEEEecCcccc-ccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFL-KKLNPKQNRKIPILKYNFVYNLKKDFP 185 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~-~G~~g~~~~~~~~~~~~~i~~i~~~~~ 185 (311)
+.++.+++..++||++|.+-+|..-. -|+.. ..+..+.+.+.++.+.++
T Consensus 135 ~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~----~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 135 DRIKLINKDLEAGADYVIIEGRESGKNIGLFD----EKGNVKEDELDVLAENVD 184 (237)
T ss_pred HHHHHHHHHHHCCCcEEEEeehhcCCCcceeC----CCCCCchHHHHHHHhhCC
Confidence 56677777799999999999996321 13221 123456788888887663
No 399
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.57 E-value=1.6 Score=38.62 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=80.1
Q ss_pred EEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386 49 AFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127 (311)
Q Consensus 49 ~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~ 127 (311)
.++|+|- ++++ |+.+.++|+|.|=+.+-.+++. .=+++.+.+|.+.+...+ .+|.|-..
T Consensus 4 ~vKICGi~~~ed----a~~~~~~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf~~----- 63 (210)
T PRK01222 4 RVKICGITTPED----AEAAAELGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVFVN----- 63 (210)
T ss_pred eEEECCCCcHHH----HHHHHHcCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEEeC-----
Confidence 4889995 4554 3455578999988875444332 135788888888765322 34444222
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh-
Q psy2386 128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN- 206 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~- 206 (311)
.+ ..++.+.+++.+.+.|.+||-. +.++++.+++.. +++|+-.=.|.+..+.....+
T Consensus 64 -~~---~~~i~~~~~~~~~d~vQLHg~e-----------------~~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~~~ 121 (210)
T PRK01222 64 -AS---DEEIDEIVETVPLDLLQLHGDE-----------------TPEFCRQLKRRY-GLPVIKALRVRSAGDLEAAAAY 121 (210)
T ss_pred -CC---HHHHHHHHHhcCCCEEEECCCC-----------------CHHHHHHHHhhc-CCcEEEEEecCCHHHHHHHHhh
Confidence 11 3466777889999999999852 446788888776 577765555655555544433
Q ss_pred --hcCEEEEeh
Q psy2386 207 --YIDGVMLGR 215 (311)
Q Consensus 207 --~adgVmigR 215 (311)
.||.+++=.
T Consensus 122 ~~~~d~~L~Ds 132 (210)
T PRK01222 122 YGDADGLLLDA 132 (210)
T ss_pred hccCCEEEEcC
Confidence 288888743
No 400
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.56 E-value=0.27 Score=43.18 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=74.1
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 195 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI 195 (311)
|+..=+|.- +.++..++++.+.+.|+..|-|.-|+. --.+.|+++++.+|+ -+++.|-|
T Consensus 5 ~vv~Vir~~-----~~~~a~~ia~al~~gGi~~iEit~~tp---------------~a~~~I~~l~~~~~~-~~vGAGTV 63 (201)
T PRK06015 5 PVIPVLLID-----DVEHAVPLARALAAGGLPAIEITLRTP---------------AALDAIRAVAAEVEE-AIVGAGTI 63 (201)
T ss_pred CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEeeEeC
Confidence 455556642 234678999999999999999987763 246789999988864 67999999
Q ss_pred CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386 196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR 249 (311)
Q Consensus 196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
.|.+++++.++. ++.++.= --||.+.+...+. +-...+-..|+.|+...
T Consensus 64 l~~e~a~~ai~aGA~FivSP---~~~~~vi~~a~~~--~i~~iPG~~TptEi~~A 113 (201)
T PRK06015 64 LNAKQFEDAAKAGSRFIVSP---GTTQELLAAANDS--DVPLLPGAATPSEVMAL 113 (201)
T ss_pred cCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCCEeCCCCCHHHHHHH
Confidence 999999999986 8887752 1445555444331 11111134567776544
No 401
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=94.51 E-value=0.29 Score=45.34 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEe
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
+++...+-|+...+.|+|.|||+.-.-.| |+... ...+.+..+++++++..++||||-..
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-------g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~ 98 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS 98 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 56666666666667799999998433212 23222 23345667888888777899998654
No 402
>PLN02979 glycolate oxidase
Probab=94.46 E-value=0.55 Score=44.92 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=36.6
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
+..+|+.++.+++.. ++|||.=| |.+++|+.++.+. +|+|.|+
T Consensus 208 ~~ltW~dl~wlr~~~-~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 208 RTLSWKDVQWLQTIT-KLPILVKG-VLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCCCHHHHHHHHhcc-CCCEEeec-CCCHHHHHHHHhcCCCEEEEC
Confidence 457899999999987 79977654 6799999999987 9999883
No 403
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=94.45 E-value=2 Score=40.59 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=81.8
Q ss_pred eEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEecc
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIG 124 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g 124 (311)
+-..+...+++.+.+. +.+ .||..+-+..|=+ | .+++.-.+.++++++.++ ..+.+-..-+
T Consensus 81 ~~~tv~~~~~e~~~~~---~~~~~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ 144 (327)
T PRK02901 81 VNATVPAVDAAQVPEV---LARFPGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGG 144 (327)
T ss_pred eeEEeCCCCHHHHHHH---HHHhCCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 3333334456554333 333 3666666654411 1 234555566777777764 3333333334
Q ss_pred CCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
|+. ++..++++.+ ++.++.+|- + |..+++..+++++.+ .+||.+.=.+++..|..+
T Consensus 145 ws~----~~Ai~~~~~L~e~~~l~~iE---------------q---P~~~~~~la~Lr~~~-~vPIA~DEs~~~~~d~~~ 201 (327)
T PRK02901 145 WSV----DEAVAAARALDADGPLEYVE---------------Q---PCATVEELAELRRRV-GVPIAADESIRRAEDPLR 201 (327)
T ss_pred CCH----HHHHHHHHHhhhccCceEEe---------------c---CCCCHHHHHHHHHhC-CCCEEeCCCCCCHHHHHH
Confidence 543 3567888888 667777661 1 112467788898887 799888778999999999
Q ss_pred HHhh--cCEEEEehhhhhC
Q psy2386 204 HLNY--IDGVMLGREAYKN 220 (311)
Q Consensus 204 ~l~~--adgVmigRa~l~~ 220 (311)
+++. +|.+++==+-++.
T Consensus 202 l~~~~a~dvi~ik~~~~GG 220 (327)
T PRK02901 202 VARAGAADVAVLKVAPLGG 220 (327)
T ss_pred HHHcCCCCEEEeCcchhCC
Confidence 9975 8888775443333
No 404
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=94.42 E-value=0.54 Score=42.92 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe--ccCCCCC------
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR--IGIDDIN------ 129 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR--~g~~~~~------ 129 (311)
..+.++.+.+.++|||+|||++++|-.. .... .+++.+.++.+.+.+.-++.+++-.. .+....+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~------~~~~-~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~ 82 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSW------LSRP-LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREK 82 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCcc------CCCC-CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHH
Confidence 5677888899999999999999887432 1111 25677888888877752334444211 1221211
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEe--cC-----CCCHHH
Q psy2386 130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIIN--GG-----IKTKKE 200 (311)
Q Consensus 130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~n--Gg-----I~s~~d 200 (311)
..+.+...++.+.+.|+..+.+|+... .+. ..+... ..-.+.++++.+.. ..+.+..- ++ +.|+++
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~--~~~-~~~~~~--~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~ 157 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSY--LGQ-SKEEGL--KRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEE 157 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCC--CCC-CHHHHH--HHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHH
Confidence 123456667777889999999986532 110 000000 00113334444321 14655431 22 578999
Q ss_pred HHHHHhhcC
Q psy2386 201 IDLHLNYID 209 (311)
Q Consensus 201 a~~~l~~ad 209 (311)
+.++++.++
T Consensus 158 ~~~li~~v~ 166 (279)
T cd00019 158 LKEIIDLIK 166 (279)
T ss_pred HHHHHHhcC
Confidence 999998765
No 405
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=94.36 E-value=2.6 Score=37.26 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~ 123 (311)
+.|+.+|+.|.|.+.+.+.|+.+.+. |--.|.| |.+. .-.+.++.+++. ++++.+-.=
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~V- 109 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTAI- 109 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEEe-
Confidence 57899999999999999999988876 3223333 3321 123344455443 555544221
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHH---HHhCCCCe-EEEecCCCCH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNL---KKDFPELE-IIINGGIKTK 198 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i---~~~~~~ip-vi~nGgI~s~ 198 (311)
+ ..+=+....++|+++|..+ ||-. ..|.. -++.++++ .+.. +++ =+...+++++
T Consensus 110 -~--------s~~Qa~~Aa~AGA~yvsP~vgR~~-~~g~d----------g~~~i~~i~~~~~~~-~~~tkil~As~r~~ 168 (211)
T cd00956 110 -F--------SAAQALLAAKAGATYVSPFVGRID-DLGGD----------GMELIREIRTIFDNY-GFDTKILAASIRNP 168 (211)
T ss_pred -c--------CHHHHHHHHHcCCCEEEEecChHh-hcCCC----------HHHHHHHHHHHHHHc-CCCceEEecccCCH
Confidence 1 1234566678999998865 6643 22221 23444444 3343 344 4677899999
Q ss_pred HHHHHHHhh-cCEEEEe
Q psy2386 199 KEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 199 ~da~~~l~~-adgVmig 214 (311)
+++.+.... ||.|=+.
T Consensus 169 ~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 169 QHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 999998765 9999887
No 406
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.34 E-value=1.5 Score=40.18 Aligned_cols=128 Identities=14% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE-EEEeccCCCCCcHHHHHHHHHHH
Q psy2386 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT-VKHRIGIDDINSYDFVRDFVGTV 141 (311)
Q Consensus 63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs-vKiR~g~~~~~~~~~~~e~~~~l 141 (311)
.|++++++|+|.|=+. -....+. -|+-+.+--..+.+...+++|++....|+. +.+..+... + .++..+-+.++
T Consensus 27 sA~i~~~aG~d~ilvG--dSlgm~~-lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~-~-~e~a~~na~rl 101 (263)
T TIGR00222 27 FAKLFADAGVDVILVG--DSLGMVV-LGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYA-T-PEQALKNAARV 101 (263)
T ss_pred HHHHHHHcCCCEEEEC--ccHhHHh-cCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCC-C-HHHHHHHHHHH
Confidence 5788889999998853 2222222 234444445667788888888887433322 223322221 2 33445555554
Q ss_pred -HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE---------Ee--cCC----CCHHHHHHHH
Q psy2386 142 -SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII---------IN--GGI----KTKKEIDLHL 205 (311)
Q Consensus 142 -~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi---------~n--GgI----~s~~da~~~l 205 (311)
+++|+++|.+-+... ..+.|+.+.+. .|||+ ++ ||. ++.+++.+++
T Consensus 102 ~~eaGa~aVkiEgg~~----------------~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i 163 (263)
T TIGR00222 102 MQETGANAVKLEGGEW----------------LVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLL 163 (263)
T ss_pred HHHhCCeEEEEcCcHh----------------HHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHH
Confidence 459999999976531 23556666654 58888 33 555 3555555555
Q ss_pred h-------h-cCEEEE
Q psy2386 206 N-------Y-IDGVML 213 (311)
Q Consensus 206 ~-------~-adgVmi 213 (311)
+ . |+++.+
T Consensus 164 ~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 164 EDALALEEAGAQLLVL 179 (263)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3 1 776665
No 407
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.34 E-value=0.73 Score=40.87 Aligned_cols=110 Identities=13% Similarity=0.006 Sum_probs=73.9
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC--eEEEec
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL--EIIING 193 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i--pvi~nG 193 (311)
++..=+|.. +.++...+++.+.+.|+..+-|.-|+. .-.+.|+++++.+++- -++|.|
T Consensus 14 ~vi~vir~~-----~~~~a~~~~~al~~~Gi~~iEit~~~~---------------~a~~~i~~l~~~~~~~p~~~vGaG 73 (213)
T PRK06552 14 GVVAVVRGE-----SKEEALKISLAVIKGGIKAIEVTYTNP---------------FASEVIKELVELYKDDPEVLIGAG 73 (213)
T ss_pred CEEEEEECC-----CHHHHHHHHHHHHHCCCCEEEEECCCc---------------cHHHHHHHHHHHcCCCCCeEEeee
Confidence 555556752 234678999999999999999987763 2467899999887422 479999
Q ss_pred CCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHH
Q psy2386 194 GIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRM 250 (311)
Q Consensus 194 gI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
-|.|++++++.++. ++.++. . -.||.+.+...+. +-...+-..|+.|....+
T Consensus 74 TV~~~~~~~~a~~aGA~Fivs--P-~~~~~v~~~~~~~--~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 74 TVLDAVTARLAILAGAQFIVS--P-SFNRETAKICNLY--QIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred eCCCHHHHHHHHHcCCCEEEC--C-CCCHHHHHHHHHc--CCCEECCcCCHHHHHHHH
Confidence 99999999999987 998882 1 2344444433321 111111345677766553
No 408
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=94.30 E-value=1.3 Score=41.63 Aligned_cols=122 Identities=7% Similarity=0.080 Sum_probs=74.7
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcH
Q psy2386 52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY 131 (311)
Q Consensus 52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~ 131 (311)
|...+|+.+++-++.. .||..+-+.+|- .+++.-.+.++++++.+ | .+++|+.....-+.
T Consensus 111 l~~~~~~~~~~~a~~~--~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~--~-~~~l~vDaN~~w~~ 170 (322)
T PRK05105 111 LCYGDPDELILKLADM--PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAI--P-DLKLRLDANRGWTL 170 (322)
T ss_pred eecCCHHHHHHHHHHc--CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhC--C-CCeEEEECCCCCCH
Confidence 4445777776666544 577777765431 23444556677777765 3 34555533222223
Q ss_pred HHHHHHHHHHHH---cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386 132 DFVRDFVGTVSS---AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY- 207 (311)
Q Consensus 132 ~~~~e~~~~l~~---~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~- 207 (311)
++..++++.+++ .++.+|- +. ..+++...++++.. .+||.+.=.+.++++. ..+..
T Consensus 171 ~~A~~~~~~l~~~~~~~i~~iE---------------qP---~~~~~~~~~l~~~~-~~PIa~DEs~~~~~~~-~~~~~~ 230 (322)
T PRK05105 171 EKAQQFAKYVPPDYRHRIAFLE---------------EP---CKTPDDSRAFARAT-GIAIAWDESLREPDFQ-FEAEPG 230 (322)
T ss_pred HHHHHHHHHhhhhcCCCccEEE---------------CC---CCCHHHHHHHHHhC-CCCEEECCCCCchhhh-hhhcCC
Confidence 457888899988 7777771 11 12345567888887 7999888888888643 33344
Q ss_pred cCEEEE
Q psy2386 208 IDGVML 213 (311)
Q Consensus 208 adgVmi 213 (311)
+|+|++
T Consensus 231 ~d~i~i 236 (322)
T PRK05105 231 VRAIVI 236 (322)
T ss_pred CCEEEE
Confidence 887765
No 409
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.29 E-value=0.56 Score=43.32 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDF--PELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~--~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+-+..+.++|+|.|.+..-+. .+. +.+..+++.. +++.+.++||| +++.+.++.+. +|.+
T Consensus 193 eea~~a~~agaDiI~LDn~~~---------------e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNMTP---------------EEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVI 256 (278)
T ss_pred HHHHHHHHcCcCEEEECCCCH---------------HHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEE
Confidence 446666789999887754431 122 2233343322 46889999999 89999999887 9999
Q ss_pred EEehhhhhCCc
Q psy2386 212 MLGREAYKNPF 222 (311)
Q Consensus 212 migRa~l~~P~ 222 (311)
.+|.-...-|+
T Consensus 257 s~galt~sa~~ 267 (278)
T PRK08385 257 SLGALTHSVRN 267 (278)
T ss_pred EeChhhcCCCc
Confidence 99976553343
No 410
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.25 E-value=3.8 Score=36.79 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=86.9
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
.+.|+=+.|+-.+|+.+. +.+.++|+|.|-+|.= |+ ....++++.+|+. +..+.+-+.
T Consensus 58 t~~~~DvHLMv~~P~~~i---~~~~~aGad~it~H~Ea~~-----------------~~~~~~i~~Ik~~-G~kaGlaln 116 (229)
T PRK09722 58 ASKPLDVHLMVTDPQDYI---DQLADAGADFITLHPETIN-----------------GQAFRLIDEIRRA-GMKVGLVLN 116 (229)
T ss_pred CCCCeEEEEEecCHHHHH---HHHHHcCCCEEEECccCCc-----------------chHHHHHHHHHHc-CCCEEEEeC
Confidence 357899999999999986 4456779999999943 31 1245677788775 655566555
Q ss_pred ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCH
Q psy2386 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTK 198 (311)
Q Consensus 123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~ 198 (311)
++- + .+.+..+.+. +|.|.|=.-. .|++|.. ..+ .-++-|+++++.. .++.+-.=|||+ .
T Consensus 117 P~T----~----~~~l~~~l~~-vD~VLvMsV~---PGf~GQ~--fi~-~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~ 180 (229)
T PRK09722 117 PET----P----VESIKYYIHL-LDKITVMTVD---PGFAGQP--FIP-EMLDKIAELKALRERNGLEYLIEVDGSCN-Q 180 (229)
T ss_pred CCC----C----HHHHHHHHHh-cCEEEEEEEc---CCCcchh--ccH-HHHHHHHHHHHHHHhcCCCeEEEEECCCC-H
Confidence 531 1 2233333332 6877664332 2444331 111 2345566655432 135678889998 6
Q ss_pred HHHHHHHhh-cCEEEEehh-hhh
Q psy2386 199 KEIDLHLNY-IDGVMLGRE-AYK 219 (311)
Q Consensus 199 ~da~~~l~~-adgVmigRa-~l~ 219 (311)
+.+.++.+. ||.+.+|++ ++.
T Consensus 181 ~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 181 KTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHHcCCCEEEEChHHHcC
Confidence 788888876 999999975 543
No 411
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=94.25 E-value=0.43 Score=41.66 Aligned_cols=50 Identities=16% Similarity=0.384 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 172 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
.|++.+..+.... ..||+..|||.-+||...+..- |+||.+|+++...--
T Consensus 168 ~~~E~l~~~~~~s-~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~v 218 (229)
T COG1411 168 PDYELLTKVLELS-EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVV 218 (229)
T ss_pred CCHHHHHHHHHhc-cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcC
Confidence 4899999988865 7899999999999999988865 999999999866543
No 412
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=94.24 E-value=1.6 Score=39.10 Aligned_cols=134 Identities=14% Similarity=0.130 Sum_probs=74.5
Q ss_pred HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 144 (311)
Q Consensus 65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~ 144 (311)
..+.+.|+|.||+- +-..+--| -..|..+.+|++.+.. ..|||..+-- -.... ......+......
T Consensus 14 ~~a~~~gaDiID~K------~P~~GaLG---A~~~~vi~~i~~~~~~--~~pvSAtiGD--lp~~p-~~~~~aa~~~a~~ 79 (235)
T PF04476_consen 14 EEALAGGADIIDLK------NPAEGALG---ALFPWVIREIVAAVPG--RKPVSATIGD--LPMKP-GTASLAALGAAAT 79 (235)
T ss_pred HHHHhCCCCEEEcc------CCCCCCCC---CCCHHHHHHHHHHcCC--CCceEEEecC--CCCCc-hHHHHHHHHHHhc
Confidence 34556799999994 11122222 2457777777776544 3788886642 22111 1223334445568
Q ss_pred CCCEEEEe--cCccccccCCCCcCCCCCcCcHHHH----HHHHHhCCCCeEEEec--CCC-----CHHHHHHHHhh--cC
Q psy2386 145 GCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFV----YNLKKDFPELEIIING--GIK-----TKKEIDLHLNY--ID 209 (311)
Q Consensus 145 G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~~~i----~~i~~~~~~ipvi~nG--gI~-----s~~da~~~l~~--ad 209 (311)
|+|+|.|- +-.. ++ .-.+.+ +.++...++..+++.+ |-. ++-++.+.... |+
T Consensus 80 GvdyvKvGl~g~~~-~~------------~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~ 146 (235)
T PF04476_consen 80 GVDYVKVGLFGCKD-YD------------EAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFD 146 (235)
T ss_pred CCCEEEEecCCCCC-HH------------HHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCC
Confidence 99999873 1110 00 012222 3333322345677665 443 56666666654 99
Q ss_pred EEEEehhhhhCCcchH
Q psy2386 210 GVMLGREAYKNPFLMS 225 (311)
Q Consensus 210 gVmigRa~l~~P~i~~ 225 (311)
+||+=++.=....+|.
T Consensus 147 gvMlDTa~Kdg~~L~d 162 (235)
T PF04476_consen 147 GVMLDTADKDGGSLFD 162 (235)
T ss_pred EEEEecccCCCCchhh
Confidence 9999988876666664
No 413
>PLN02535 glycolate oxidase
Probab=94.23 E-value=0.59 Score=44.82 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 169 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
.+..+|+.++.+++.. ++||+. .||.+++|+..+.+. +|+|.+.
T Consensus 207 ~~~~tW~~i~~lr~~~-~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 207 DASLSWKDIEWLRSIT-NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCCCHHHHHHHHhcc-CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 3457899999999986 789665 668999999999987 9999884
No 414
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.23 E-value=1.5 Score=40.41 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386 54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF 133 (311)
Q Consensus 54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~ 133 (311)
.=|.+.+.+-++.+.+.|+|+|=++ +..|-...-+.+.-.++++.+++.++ +|.+-+ | . .+.++
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~----------GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gv--g--~-~~~~~ 79 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVA----------GTTGLGPSLSFQEKLELLKAYSDITD-KVIFQV--G--S-LNLEE 79 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEc----------ccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEe--C--c-CCHHH
Confidence 4588899999999999999999987 23344444455555677776666654 343322 2 1 22346
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q psy2386 134 VRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~R 154 (311)
.+++++.+++.|+|++.+..-
T Consensus 80 ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 80 SIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 889999999999999988643
No 415
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.22 E-value=1 Score=39.68 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc----cc-----CcccCcccCChHHHHHHHHHHhccccc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV----QN-----GFFGAILMTKPLLVSDCIKAMRDSVEI 115 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v----~~-----~~~G~~Ll~~~~~~~~iv~~v~~~~~~ 115 (311)
+.|+|.=|.+.++++-...++-+.+.|++.|||-+-.|..-- .. --.|+.=.-+|+.+.+.+++ +-
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a-----Ga 86 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA-----GA 86 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc-----CC
Confidence 568999999999999999999999999999999888774321 01 11233333466666655443 11
Q ss_pred eeEEEEeccCCC---------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHH
Q psy2386 116 DITVKHRIGIDD---------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180 (311)
Q Consensus 116 pvsvKiR~g~~~---------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i 180 (311)
-+.| ..|.+. .-. ...| +-.+.+.|++.+.+.+-.. .+ --.+++.+
T Consensus 87 ~fiV--sP~~~~ev~~~a~~~~ip~~PG~~--TptE-i~~Ale~G~~~lK~FPa~~-~G-------------g~~~~ka~ 147 (211)
T COG0800 87 QFIV--SPGLNPEVAKAANRYGIPYIPGVA--TPTE-IMAALELGASALKFFPAEV-VG-------------GPAMLKAL 147 (211)
T ss_pred CEEE--CCCCCHHHHHHHHhCCCcccCCCC--CHHH-HHHHHHcChhheeecCccc-cC-------------cHHHHHHH
Confidence 1211 112111 000 0112 2344567777777665432 11 12567777
Q ss_pred HHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386 181 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA 217 (311)
Q Consensus 181 ~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~ 217 (311)
+--+|++++.-.|||.. +.+.+++.. +..|-+|..+
T Consensus 148 ~gP~~~v~~~pTGGVs~-~N~~~yla~gv~avG~Gs~l 184 (211)
T COG0800 148 AGPFPQVRFCPTGGVSL-DNAADYLAAGVVAVGLGSWL 184 (211)
T ss_pred cCCCCCCeEeecCCCCH-HHHHHHHhCCceEEecCccc
Confidence 66667899999999975 588888876 7777777544
No 416
>PRK06256 biotin synthase; Validated
Probab=94.19 E-value=1 Score=42.50 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=76.7
Q ss_pred HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 144 (311)
Q Consensus 65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~ 144 (311)
+.+.++|++.+.+|+=. .+.+.+.- .. -.+.+...+.++.+++ .++++.+-+=+|. .++.++..+.+..+.+.
T Consensus 156 ~~LkeaG~~~v~~~lEt-s~~~~~~i-~~--~~t~~~~i~~i~~a~~-~Gi~v~~~~I~Gl--gEt~ed~~~~~~~l~~l 228 (336)
T PRK06256 156 ERLKEAGVDRYNHNLET-SRSYFPNV-VT--THTYEDRIDTCEMVKA-AGIEPCSGGIIGM--GESLEDRVEHAFFLKEL 228 (336)
T ss_pred HHHHHhCCCEEecCCcc-CHHHHhhc-CC--CCCHHHHHHHHHHHHH-cCCeeccCeEEeC--CCCHHHHHHHHHHHHhC
Confidence 44556677777776554 44332211 11 1244555566666665 3777665555555 23445678889999999
Q ss_pred CCCEEEEecCccccccCCCCcCCCCCcCcHHHH---HHHHHhCCCCeEEEecCC-CCHHHHH-HHHhhcCEEEEeh
Q psy2386 145 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV---YNLKKDFPELEIIINGGI-KTKKEID-LHLNYIDGVMLGR 215 (311)
Q Consensus 145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i---~~i~~~~~~ipvi~nGgI-~s~~da~-~~l~~adgVmigR 215 (311)
|++.+.++.-+. ..|. +-++ ..++...+.+ +-++-..|+..|...||= ....+.. ..+..|+++|+|=
T Consensus 229 ~~~~v~i~~l~P-~pGT-~l~~-~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~ 301 (336)
T PRK06256 229 DADSIPINFLNP-IPGT-PLEN-HPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGN 301 (336)
T ss_pred CCCEEeeccccc-CCCC-CCCC-CCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeECC
Confidence 999988764332 1110 0001 1111233333 333344577888666664 3444443 3333499999993
No 417
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.16 E-value=0.55 Score=43.16 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF---PELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~---~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+..+.++|+|+|.+-.-+ .+.++++.+.. +++|+.+.|||+ ++.+.++.+. +|++.+
T Consensus 194 a~~A~~~gaD~I~ld~~~------------------~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 194 AEEALEAGADIIMLDNMS------------------PEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETGVDVIST 254 (269)
T ss_pred HHHHHHcCCCEEEECCCC------------------HHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 444567899999885432 13333333222 479999999997 7888888876 999999
Q ss_pred ehhhhhCCc
Q psy2386 214 GREAYKNPF 222 (311)
Q Consensus 214 gRa~l~~P~ 222 (311)
|.-...-|+
T Consensus 255 gal~~s~~~ 263 (269)
T cd01568 255 GALTHSAPA 263 (269)
T ss_pred cHHHcCCCc
Confidence 865555544
No 418
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.12 E-value=0.91 Score=40.24 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=70.7
Q ss_pred HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386 104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 183 (311)
Q Consensus 104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~ 183 (311)
++++.+.+. ++..=+|.- +.++..++++.+.+.|++.|-|.-++. .-.+.|+++++.
T Consensus 7 ~~~~~l~~~---~~iaV~r~~-----~~~~a~~i~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~ 63 (212)
T PRK05718 7 SIEEILRAG---PVVPVIVIN-----KLEDAVPLAKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKE 63 (212)
T ss_pred HHHHHHHHC---CEEEEEEcC-----CHHHHHHHHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHH
Confidence 445555443 455556741 233678999999999999999986652 245789999998
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386 184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~ 229 (311)
+|+ -+++.|-|.+.+++++.++. ++.++.= --+|.+.+...+
T Consensus 64 ~p~-~~IGAGTVl~~~~a~~a~~aGA~FivsP---~~~~~vi~~a~~ 106 (212)
T PRK05718 64 VPE-ALIGAGTVLNPEQLAQAIEAGAQFIVSP---GLTPPLLKAAQE 106 (212)
T ss_pred CCC-CEEEEeeccCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHH
Confidence 875 67999999999999999987 9988762 134455554443
No 419
>PRK02227 hypothetical protein; Provisional
Probab=94.07 E-value=1.7 Score=39.13 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=78.9
Q ss_pred HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 144 (311)
Q Consensus 65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~ 144 (311)
..+...|+|.||+-- |. .|+-=-+.|..+.+|++.+... .|||..+- .-.... .....-+..+...
T Consensus 14 ~~Al~~GaDiIDvK~--P~-------~GaLGA~~p~vir~Iv~~~~~~--~pvSAtiG--D~p~~p-~~~~~aa~~~a~~ 79 (238)
T PRK02227 14 LEALAGGADIIDVKN--PK-------EGSLGANFPWVIREIVAAVPGR--KPVSATIG--DVPYKP-GTISLAALGAAAT 79 (238)
T ss_pred HHHHhcCCCEEEccC--CC-------CCCCCCCCHHHHHHHHHHhCCC--CCceeecc--CCCCCc-hHHHHHHHHHHhh
Confidence 345578999999941 22 2333345688888888887754 68988654 222221 1234455666678
Q ss_pred CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH----HHHhCCCCeEEEec--CCC-----CHHHHHHHHhh--cCEE
Q psy2386 145 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN----LKKDFPELEIIING--GIK-----TKKEIDLHLNY--IDGV 211 (311)
Q Consensus 145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~----i~~~~~~ipvi~nG--gI~-----s~~da~~~l~~--adgV 211 (311)
|+|+|.|- .. |.+.. ....+.+.. ++...++..|++.+ |-. ++.++.++... +|++
T Consensus 80 GvDyVKvG-l~----~~~~~------~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~ 148 (238)
T PRK02227 80 GADYVKVG-LY----GGKTA------EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGA 148 (238)
T ss_pred CCCEEEEc-CC----CCCcH------HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEE
Confidence 99999872 21 10000 012233333 33333456777766 433 66677777754 9999
Q ss_pred EEehhhhhCCcchH
Q psy2386 212 MLGREAYKNPFLMS 225 (311)
Q Consensus 212 migRa~l~~P~i~~ 225 (311)
|+=++.=..-.+|.
T Consensus 149 MlDTa~Kdg~~Lfd 162 (238)
T PRK02227 149 MLDTAIKDGKSLFD 162 (238)
T ss_pred EEecccCCCcchHh
Confidence 99776655555553
No 420
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.03 E-value=0.32 Score=42.85 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=62.9
Q ss_pred ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386 115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG 194 (311)
Q Consensus 115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg 194 (311)
.++..=+|.- +.++..++++.+.+.|+..+-+.-++. ...+.++++++.++.--++|.|.
T Consensus 10 ~~~~~v~r~~-----~~~~~~~~~~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaGT 69 (206)
T PRK09140 10 LPLIAILRGI-----TPDEALAHVGALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAGT 69 (206)
T ss_pred CCEEEEEeCC-----CHHHHHHHHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEEe
Confidence 3555557752 234678999999999999999986652 23468999998885334799999
Q ss_pred CCCHHHHHHHHhh-cCEEEEe
Q psy2386 195 IKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 195 I~s~~da~~~l~~-adgVmig 214 (311)
|.+.+++...++. +|+++.+
T Consensus 70 V~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 70 VLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred cCCHHHHHHHHHcCCCEEECC
Confidence 9999999999987 9999995
No 421
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.01 E-value=0.26 Score=49.38 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
..+.++.|.++|+|.|.|. + ..|++- .-.+.|+++++.+|.--.++.|.|.|+++++++++. ||+|.
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd--~--a~g~~~--------~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 243 YAERVPALVEAGADVLCID--S--SEGYSE--------WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred HHHHHHHHHHhCCCeEeec--C--cccccH--------HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEE
Confidence 4688999999999999986 2 223210 125789999998852235788999999999999986 99998
Q ss_pred Eeh
Q psy2386 213 LGR 215 (311)
Q Consensus 213 igR 215 (311)
||.
T Consensus 311 vg~ 313 (502)
T PRK07107 311 VGI 313 (502)
T ss_pred ECC
Confidence 853
No 422
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.99 E-value=0.43 Score=43.55 Aligned_cols=60 Identities=25% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcc---cCChHHHHHHHHHHhccccceeEEEE
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAIL---MTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~L---l~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.+++...+.|+...+.|+|.||||+-...+ |+.. ....+.+..+++++++.+++||++-.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-------~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT 82 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRP-------GADRVSPEEELNRVVPVIKALRDQPDVPISVDT 82 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC
Confidence 578888888888888999999997322222 1111 12334688888998887799998854
No 423
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=93.95 E-value=5.3 Score=37.06 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=93.9
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.....|+++++++ +.++..+.|+.+++.|+|+|-+- -|... -.+.+-+.+-.+++.+++++||.+=-
T Consensus 71 ~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~--pP~y~----------~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 71 AKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLL--PPYLI----------NGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred hCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEEC--CCCCC----------CCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 4556899999975 68888899999999999999773 34321 12346677778888888889988765
Q ss_pred eccCCCCCcHHHHHHHHHHHHH-c-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEec-CCCC
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSS-A-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIING-GIKT 197 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~-~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nG-gI~s 197 (311)
|.|.+- ..+++..|.+ . .+.+|--.. .|+..+.++.+..+ ++. +.+| |..+
T Consensus 138 ~~g~~l------~~~~~~~La~~~~nvvgiKds~------------------~d~~~~~~~~~~~~~~~~-v~~G~~~~d 192 (296)
T TIGR03249 138 RDNAVL------NADTLERLADRCPNLVGFKDGI------------------GDMEQMIEITQRLGDRLG-YLGGMPTAE 192 (296)
T ss_pred CCCCCC------CHHHHHHHHhhCCCEEEEEeCC------------------CCHHHHHHHHHHcCCCeE-EEeCCCcch
Confidence 655432 2455666654 3 233332211 26666777766553 343 4444 2222
Q ss_pred HHHHHHHH-hhcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386 198 KKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYY 232 (311)
Q Consensus 198 ~~da~~~l-~~adgVmigRa~l~~P~i~~~~~~~~~ 232 (311)
..+...+ .+++|++.|-+.+ .|.++.++.+.+.
T Consensus 193 -~~~~~~~~~Ga~G~is~~~n~-~P~~~~~~~~~~~ 226 (296)
T TIGR03249 193 -VTAPAYLPLGVTSYSSAIFNF-IPHIARAFYEALR 226 (296)
T ss_pred -hhHHHHHhCCCCEEEecHHHh-hHHHHHHHHHHHH
Confidence 2223333 3499999886654 4666666665543
No 424
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.93 E-value=1.8 Score=36.38 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 58 KKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 58 ~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
+...+.++.+.+.|++.|.+-. .+|.... ...+ +.+..+++..++|+.+.+....... ...
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE---------TDDK----EVLKEVAAETDLPLGVQLAINDAAA----AVD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC---------Cccc----cHHHHHHhhcCCcEEEEEccCCchh----hhh
Confidence 5666777778888899888753 2222210 0011 3445555556888888776532211 122
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHhh-cCEEEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~~da~~~l~~-adgVmi 213 (311)
..++.+.++|+|.|.+|+-.... +....+.+.++++.++++|++..-... ..+++ .+.+. +|.|.+
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-~~~~~g~d~i~~ 142 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAA-AAEEAGVDEVGL 142 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-hHHHcCCCEEEE
Confidence 33678899999999999664200 012456788888876567876554332 22222 12333 999998
Q ss_pred ehh
Q psy2386 214 GRE 216 (311)
Q Consensus 214 gRa 216 (311)
...
T Consensus 143 ~~~ 145 (200)
T cd04722 143 GNG 145 (200)
T ss_pred cCC
Confidence 754
No 425
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.90 E-value=0.63 Score=42.37 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=69.1
Q ss_pred ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386 91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP 170 (311)
Q Consensus 91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~ 170 (311)
.|+..|+|.+++. ++-+ .++||-.|=-++ .+.+++..-++-+.+.|-..|++.-|-- ..| +....-
T Consensus 134 vGARNMQNF~LLk----e~G~-~~kPvLLKRg~~----aTieEwL~AAEYI~s~GN~~vILCERGI--Rtf---e~~TRn 199 (286)
T COG2876 134 VGARNMQNFALLK----EVGR-QNKPVLLKRGLS----ATIEEWLNAAEYILSHGNGNVILCERGI--RTF---EKATRN 199 (286)
T ss_pred hcccchhhhHHHH----Hhcc-cCCCeEEecCcc----ccHHHHHHHHHHHHhCCCCcEEEEeccc--ccc---cccccc
Confidence 3555666665543 3333 489999995553 2344566667777899988888765421 111 111222
Q ss_pred cCcHHHHHHHHHhCCCCeEEEec-CCCCHHHHHH-----HHhh-cCEEEEehhhhhCCc
Q psy2386 171 ILKYNFVYNLKKDFPELEIIING-GIKTKKEIDL-----HLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 171 ~~~~~~i~~i~~~~~~ipvi~nG-gI~s~~da~~-----~l~~-adgVmigRa~l~~P~ 222 (311)
..|...|..+++.. ++|||++= .-....|... .++. |||+|+= ...||.
T Consensus 200 tLDi~aV~~~kq~T-HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~ 255 (286)
T COG2876 200 TLDISAVPILKQET-HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPE 255 (286)
T ss_pred eechHHHHHHHhhc-CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCcc
Confidence 37899999999987 89999863 2222233322 2223 9999995 344554
No 426
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.88 E-value=0.34 Score=43.97 Aligned_cols=97 Identities=16% Similarity=0.301 Sum_probs=72.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEE---EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFI---VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~it---vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
|...-++.+.+.+.++.+.+.|+..+- .-+||.- ..|.|. +.--+++++++++.. .+|++. ++.++++
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~-~sf~G~-----G~~gl~~L~~~~~~~-Gl~~~T--ev~d~~~ 91 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSA-ASFQGL-----GLQGIRYLHEVCQEF-GLLSVS--EIMSERQ 91 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCC-cccCCC-----CHHHHHHHHHHHHHc-CCCEEE--eeCCHHH
Confidence 555555666788999999999998774 3467652 222221 112367788888888 899988 8999999
Q ss_pred HHHHHhhcCEEEEehhhhhCCcchHHhHh
Q psy2386 201 IDLHLNYIDGVMLGREAYKNPFLMSNFDL 229 (311)
Q Consensus 201 a~~~l~~adgVmigRa~l~~P~i~~~~~~ 229 (311)
+..+.+.+|.+.||...+.|..+...+.+
T Consensus 92 v~~~~e~vdilqIgs~~~~n~~LL~~va~ 120 (250)
T PRK13397 92 LEEAYDYLDVIQVGARNMQNFEFLKTLSH 120 (250)
T ss_pred HHHHHhcCCEEEECcccccCHHHHHHHHc
Confidence 99887779999999999999888877754
No 427
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=93.86 E-value=2.5 Score=38.63 Aligned_cols=132 Identities=16% Similarity=0.089 Sum_probs=79.0
Q ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCC
Q psy2386 49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDD 127 (311)
Q Consensus 49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~ 127 (311)
++.|...|- ..|++++++|+|.|=+. =...++. -|+.+.+--+.+.+....++|++... .-+.+-+..+...
T Consensus 18 i~~lTaYD~----~~A~~~d~agvD~iLVG--DSlgmv~-~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~ 90 (261)
T PF02548_consen 18 IVMLTAYDY----PSARIADEAGVDIILVG--DSLGMVV-LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQ 90 (261)
T ss_dssp EEEEE--SH----HHHHHHHHTT-SEEEE---TTHHHHT-T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSST
T ss_pred EEEEecccH----HHHHHHHHcCCCEEEeC--CcHHHhe-eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccccc
Confidence 566666665 45788899999998774 2222222 24555666677888888888888774 4456677766553
Q ss_pred CCcHHHHHHHHHHHHH-cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC-----------
Q psy2386 128 INSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI----------- 195 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~-~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI----------- 195 (311)
.+ .++.++-+.++.+ +|+|++-+-|... ..+.|+.+.++ .|||++-=|+
T Consensus 91 ~s-~e~av~nA~rl~ke~GadaVKlEGg~~----------------~~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GGy 151 (261)
T PF02548_consen 91 AS-PEQAVRNAGRLMKEAGADAVKLEGGAE----------------IAETIKALVDA--GIPVMGHIGLTPQSVHQLGGY 151 (261)
T ss_dssp SS-HHHHHHHHHHHHHTTT-SEEEEEBSGG----------------GHHHHHHHHHT--T--EEEEEES-GGGHHHHTSS
T ss_pred CC-HHHHHHHHHHHHHhcCCCEEEeccchh----------------HHHHHHHHHHC--CCcEEEEecCchhheeccCCc
Confidence 33 3355666666655 9999999987642 35789999886 6999885433
Q ss_pred ----CCHHHHHHHHh
Q psy2386 196 ----KTKKEIDLHLN 206 (311)
Q Consensus 196 ----~s~~da~~~l~ 206 (311)
+|.+++.++++
T Consensus 152 r~qGk~~~~a~~l~~ 166 (261)
T PF02548_consen 152 RVQGKTAEEAEKLLE 166 (261)
T ss_dssp --CSTSHHHHHHHHH
T ss_pred eEEecCHHHHHHHHH
Confidence 36777777664
No 428
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.85 E-value=0.32 Score=46.15 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386 45 EHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI 117 (311)
Q Consensus 45 ~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv 117 (311)
+.|+.+-|. |.+++++.+.++.+++.|+|.|++..|...+... ..+.+. + .+..+.+++.+++||
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~-~~~~~~---~----~~~~~~ik~~~~ipV 278 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARI-DVYPGY---Q----VPFAEHIREHANIAT 278 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCccc---c----HHHHHHHHhhcCCcE
Confidence 568888877 5678999999999999999999999886322111 111111 2 234567777788998
Q ss_pred EEEEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386 118 TVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF 184 (311)
Q Consensus 118 svKiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~ 184 (311)
.+-=++ .. .+.+..+.+.| +|.|-+ ||-.. +|-+++.++++.+
T Consensus 279 i~~G~i--~~-------~~~a~~~l~~g~~D~V~~-gR~~i--------------adP~~~~k~~~~~ 322 (337)
T PRK13523 279 GAVGLI--TS-------GAQAEEILQNNRADLIFI-GRELL--------------RNPYFPRIAAKEL 322 (337)
T ss_pred EEeCCC--CC-------HHHHHHHHHcCCCChHHh-hHHHH--------------hCccHHHHHHHHc
Confidence 764332 11 24455555555 888755 55321 3445677777654
No 429
>KOG2550|consensus
Probab=93.78 E-value=0.57 Score=45.16 Aligned_cols=69 Identities=22% Similarity=0.421 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.+-...+.++|+|.|++.. .+|.| ..-.+.|+.+++.+|++.||+ |+|-|.++++.++.. +||+=|
T Consensus 253 K~rl~ll~~aGvdvviLDS----SqGnS--------~~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrV 319 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDS----SQGNS--------IYQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRV 319 (503)
T ss_pred hHHHHHhhhcCCcEEEEec----CCCcc--------hhHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEe
Confidence 3556778999999999863 34443 135689999999999888775 888899999999987 998777
Q ss_pred ehh
Q psy2386 214 GRE 216 (311)
Q Consensus 214 gRa 216 (311)
|-|
T Consensus 320 GMG 322 (503)
T KOG2550|consen 320 GMG 322 (503)
T ss_pred ccc
Confidence 543
No 430
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.78 E-value=1.6 Score=38.65 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
+.++.+-|--.|+..+..-+ +.++|+|.+-+|..+ .++-+.+.++++++. +.-+.|-+-..
T Consensus 56 ~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a----------------~~~~i~~~~~~~~~~-g~~~~V~llts 116 (216)
T PRK13306 56 DKIIVADTKIADAGKILAKM--AFEAGADWVTVICAA----------------HIPTIKAALKVAKEF-NGEIQIELYGN 116 (216)
T ss_pred CCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCC----------------CHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 56899999999988776534 668899999999432 234466666666643 44444444443
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL 203 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~ 203 (311)
++. +-++.+.+.|++.+.+| +.... +.|.. -.+...+.++++++. +..+...|||+- +.+..
T Consensus 117 ~~~--------~~l~~~~~~~~~~~vl~~a~~~~---~~G~v---~s~~~~~~ir~~~~~--~~~i~V~gGI~~-~~~~~ 179 (216)
T PRK13306 117 WTW--------EQAQQWRDAGISQVIYHRSRDAQ---LAGVA---WGEKDLNKVKKLSDM--GFKVSVTGGLVV-EDLKL 179 (216)
T ss_pred CCH--------HHHHHHHcCChhhhhhhhhhhhh---hcCCC---CCHHHHHHHHHHhcC--CCeEEEcCCCCH-hhHHH
Confidence 321 22345566777666665 33321 22210 011234556666542 455889999984 33323
Q ss_pred HHhh-cCEEEEehhhhhCCc
Q psy2386 204 HLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 204 ~l~~-adgVmigRa~l~~P~ 222 (311)
..+. +|.+++||+++..+.
T Consensus 180 ~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 180 FKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HhcCCCCEEEECCcccCCCC
Confidence 3333 999999999876555
No 431
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=93.77 E-value=0.92 Score=43.85 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=37.9
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
+..+|+.++++++.. ++||+.- ||.|.+|+..+.+. ||+|.|.
T Consensus 238 ~~~tW~~i~~lr~~~-~~pvivK-gV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWT-DLPIVLK-GILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhc-CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence 457899999999998 7998876 78999999999987 9999984
No 432
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=93.67 E-value=4 Score=37.06 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=69.0
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI 125 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~ 125 (311)
.+++-|.|.+++++.+.++.+...|+|.||+=+= -+.. +.+.+.+.+++..+++.. ++|+.+=+|.-+
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---------~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD---------FLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEec---------hhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 4789999999999999888888889999999532 1111 124566777777887765 689999889755
Q ss_pred CCC---CcHHHHHHHHHHHHHcC-CCEEEEec
Q psy2386 126 DDI---NSYDFVRDFVGTVSSAG-CRTFIVHA 153 (311)
Q Consensus 126 ~~~---~~~~~~~e~~~~l~~~G-~~~itvh~ 153 (311)
+.+ .+.++..++.+.+.+.| +++|.|--
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl 117 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVEL 117 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 322 12234567788888888 89998853
No 433
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.65 E-value=0.45 Score=43.47 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=65.8
Q ss_pred ccee--EEEEe---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe
Q psy2386 114 EIDI--TVKHR---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE 188 (311)
Q Consensus 114 ~~pv--svKiR---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip 188 (311)
++|| .+|.+ .||-.... +..++++.+++.|+++|.|..-...++| +++.+..+++.+ ++|
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~--~~~~~A~~~~~~GA~aisvlte~~~f~g------------~~~~l~~v~~~v-~iP 113 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDF--DPVEIAKAYEAGGAACLSVLTDERFFQG------------SLEYLRAARAAV-SLP 113 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCC--CHHHHHHHHHhCCCeEEEEecccccCCC------------CHHHHHHHHHhc-CCC
Confidence 4666 45643 24422221 3579999999999999988755432232 688999999988 899
Q ss_pred EEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386 189 IIINGGIKTKKEIDLHLNY-IDGVMLGREAYK 219 (311)
Q Consensus 189 vi~nGgI~s~~da~~~l~~-adgVmigRa~l~ 219 (311)
|+.--=|.++-++.+..+. ||+|.+.=..+.
T Consensus 114 vl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~ 145 (260)
T PRK00278 114 VLRKDFIIDPYQIYEARAAGADAILLIVAALD 145 (260)
T ss_pred EEeeeecCCHHHHHHHHHcCCCEEEEEeccCC
Confidence 9986667778888888776 999999766654
No 434
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=93.63 E-value=4.2 Score=35.96 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386 46 HPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI 123 (311)
Q Consensus 46 ~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~ 123 (311)
.++++=+--.| |+....+++.+.+.|+|.+-+|.... ++-+...++..++.- ++=+-+.+.
T Consensus 50 ~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G----------------~~~l~~~~~~~~~~~~~~~~v~~ls- 112 (216)
T cd04725 50 FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGG----------------SDMLKAALEAAEEKGKGLFAVTVLS- 112 (216)
T ss_pred CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCC----------------HHHHHHHHHHHhccCCeEEEEEcCC-
Confidence 67888777666 45666667777788999999993322 344555555554321 112223333
Q ss_pred cCCCC--------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386 124 GIDDI--------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 195 (311)
Q Consensus 124 g~~~~--------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI 195 (311)
.++.. ...+....+++...+.|++.+.+.+.. .+.+++.. .++.+ +..+||
T Consensus 113 s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~------------------~~~i~~~~--~~~~~-~ltPGI 171 (216)
T cd04725 113 SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE------------------PEALRRAL--GPDFL-ILTPGI 171 (216)
T ss_pred CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc------------------hHHHHHhh--CCCCe-EEcCCc
Confidence 22211 111235577888889998888776553 23343322 23555 677777
Q ss_pred CCH---------HHHHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386 196 KTK---------KEIDLHLNY-IDGVMLGREAYKNPFLMS 225 (311)
Q Consensus 196 ~s~---------~da~~~l~~-adgVmigRa~l~~P~i~~ 225 (311)
.-. .+..+.+.. ++++.+||+++..+.-..
T Consensus 172 ~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~ 211 (216)
T cd04725 172 GAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVA 211 (216)
T ss_pred CCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHH
Confidence 732 133344444 999999999988776433
No 435
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.62 E-value=2.2 Score=38.68 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=50.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc---CC-C
Q psy2386 52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG---ID-D 127 (311)
Q Consensus 52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g---~~-~ 127 (311)
++..++++ |..+++.|+|-|||+-+=.. +.|--.+.+ ++.+++.+++||.|=||+- +. +
T Consensus 6 vcv~s~~~----a~~A~~~GAdRiELc~~L~~---------GGlTPS~g~----i~~~~~~~~ipv~vMIRPR~gdF~Ys 68 (248)
T PRK11572 6 ICCYSMEC----ALTAQQAGADRIELCAAPKE---------GGLTPSLGV----LKSVRERVTIPVHPIIRPRGGDFCYS 68 (248)
T ss_pred EEECCHHH----HHHHHHcCCCEEEEccCcCC---------CCcCCCHHH----HHHHHHhcCCCeEEEEecCCCCCCCC
Confidence 44455554 34566889999999743211 112222333 4455556789998888863 11 1
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEec
Q psy2386 128 INSYDFVRDFVGTVSSAGCRTFIVHA 153 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~~G~~~itvh~ 153 (311)
+.+.+...+=++.+.+.|++.+.+-.
T Consensus 69 ~~E~~~M~~di~~~~~~GadGvV~G~ 94 (248)
T PRK11572 69 DGEFAAMLEDIATVRELGFPGLVTGV 94 (248)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 22334445557778899999998743
No 436
>PRK14057 epimerase; Provisional
Probab=93.61 E-value=2.6 Score=38.36 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=87.0
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc---------
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--------- 115 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--------- 115 (311)
..|+=+.|+-.+|+.+. +...++|+|.|-+|.=.. ..+.++++.+|+. +.
T Consensus 75 ~~p~DvHLMV~~P~~~i---~~~~~aGad~It~H~Ea~-----------------~~~~~~l~~Ir~~-G~k~~~~~~~~ 133 (254)
T PRK14057 75 TFIKDVHLMVADQWTAA---QACVKAGAHCITLQAEGD-----------------IHLHHTLSWLGQQ-TVPVIGGEMPV 133 (254)
T ss_pred CCCeeEEeeeCCHHHHH---HHHHHhCCCEEEEeeccc-----------------cCHHHHHHHHHHc-CCCcccccccc
Confidence 57888999999999986 455678999999995421 1245667777775 43
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEE
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIII 191 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~ 191 (311)
...+-+.++ .+ .+.+..+.+. +|.|.+-.-. .|+.|.. .. +.-++-|+++++.. .++.|-.
T Consensus 134 kaGlAlnP~----Tp----~e~i~~~l~~-vD~VLvMtV~---PGfgGQ~--Fi-~~~l~KI~~lr~~~~~~~~~~~IeV 198 (254)
T PRK14057 134 IRGISLCPA----TP----LDVIIPILSD-VEVIQLLAVN---PGYGSKM--RS-SDLHERVAQLLCLLGDKREGKIIVI 198 (254)
T ss_pred eeEEEECCC----CC----HHHHHHHHHh-CCEEEEEEEC---CCCCchh--cc-HHHHHHHHHHHHHHHhcCCCceEEE
Confidence 244444443 12 2334444443 8888764332 2343321 11 11344555555432 1366788
Q ss_pred ecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 192 NGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 192 nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
=|||+. +.+.++.+. ||.+.+|++++.++.
T Consensus 199 DGGI~~-~ti~~l~~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 199 DGSLTQ-DQLPSLIAQGIDRVVSGSALFRDDR 229 (254)
T ss_pred ECCCCH-HHHHHHHHCCCCEEEEChHhhCCCC
Confidence 899974 677777776 999999999876554
No 437
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=93.60 E-value=0.99 Score=42.48 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=65.5
Q ss_pred CeEEEecCCCHHH-----------H----HHHHHHH-HHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh
Q psy2386 47 PIAFQVGDNEPKK-----------L----AKSAKII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 110 (311)
Q Consensus 47 p~~~Ql~g~~~~~-----------~----~~aa~~~-~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~ 110 (311)
.+.+.|+-.-++. + ++-|+.+ +++|+|.|+||+-...+.. + -+.++.+.++++.|.
T Consensus 49 ~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~-~-------d~~~~e~~~~Vk~V~ 120 (319)
T PRK04452 49 VIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNG-K-------DKSPEEAAKTVEEVL 120 (319)
T ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCccc-c-------cchHHHHHHHHHHHH
Confidence 3778887654422 2 2333444 4899999999953322210 0 123566888999998
Q ss_pred ccccceeEEEEeccCCCCCcHHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386 111 DSVEIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189 (311)
Q Consensus 111 ~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv 189 (311)
+++++|+.|-..-..+. + .+.++. ++..+=....+.+-+. -+|+.+..+++.. +.||
T Consensus 121 eavd~PL~Id~s~n~~k-D-----~evleaale~~~g~~pLInSat~---------------en~~~i~~lA~~y-~~~V 178 (319)
T PRK04452 121 QAVDVPLIIGGSGNPEK-D-----AEVLEKVAEAAEGERCLLGSAEE---------------DNYKKIAAAAMAY-GHAV 178 (319)
T ss_pred HhCCCCEEEecCCCCCC-C-----HHHHHHHHHHhCCCCCEEEECCH---------------HHHHHHHHHHHHh-CCeE
Confidence 88999998643321111 1 122222 2322212122322221 2678888888887 7888
Q ss_pred EEec
Q psy2386 190 IING 193 (311)
Q Consensus 190 i~nG 193 (311)
++-.
T Consensus 179 va~s 182 (319)
T PRK04452 179 IAWS 182 (319)
T ss_pred EEEc
Confidence 8775
No 438
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=93.60 E-value=1.6 Score=42.16 Aligned_cols=134 Identities=12% Similarity=0.198 Sum_probs=87.0
Q ss_pred EecCCC--HHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386 51 QVGDNE--PKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127 (311)
Q Consensus 51 Ql~g~~--~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~ 127 (311)
+|.|.. +++ ...-++.+.+.|.|.+-|= --|+|++-+..-++++++. +.-+-.-+.-....
T Consensus 88 NlvGYrhyaDDvVe~Fv~ka~~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~-G~h~q~~i~YT~sP 151 (472)
T COG5016 88 NLVGYRHYADDVVEKFVEKAAENGIDVFRIF---------------DALNDVRNLKTAIKAAKKH-GAHVQGTISYTTSP 151 (472)
T ss_pred ccccccCCchHHHHHHHHHHHhcCCcEEEec---------------hhccchhHHHHHHHHHHhc-CceeEEEEEeccCC
Confidence 344543 344 3344566778888888773 1368999999999998885 43333333333334
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe----cCCCCHHHHHH
Q psy2386 128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN----GGIKTKKEIDL 203 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n----GgI~s~~da~~ 203 (311)
..+.+..+++++.+++.|+|.|++-.-. |.. .|..-++.|+.+|+.+ .+||..- -|+.+..-...
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDma----Gll------tP~~ayelVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkA 220 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMA----GLL------TPYEAYELVKAIKKEL-PVPVELHTHATSGMAEMTYLKA 220 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeeccc----ccC------ChHHHHHHHHHHHHhc-CCeeEEecccccchHHHHHHHH
Confidence 4556678999999999999999986443 221 1235789999999999 6998654 45555444444
Q ss_pred HHhhcCEE
Q psy2386 204 HLNYIDGV 211 (311)
Q Consensus 204 ~l~~adgV 211 (311)
+-+++|++
T Consensus 221 vEAGvD~i 228 (472)
T COG5016 221 VEAGVDGI 228 (472)
T ss_pred HHhCcchh
Confidence 43446654
No 439
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=93.55 E-value=0.43 Score=43.42 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~ 134 (311)
.|++...+-|+...+.|+|.||||++ |. .....+.+.+++..+++.+++|++|...-
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~-~~-----------~~~~~ee~~r~v~~i~~~~~~piSIDT~~----------- 79 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVD-YG-----------GLDGVSAMKWLLNLLATEPTVPLMLDSTN----------- 79 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CC-----------CCCHHHHHHHHHHHHHHhcCCcEEeeCCc-----------
Confidence 66777777777777789999999975 21 12345667777777877778998885331
Q ss_pred HHHHHHHHHc--CCCEE
Q psy2386 135 RDFVGTVSSA--GCRTF 149 (311)
Q Consensus 135 ~e~~~~l~~~--G~~~i 149 (311)
.+.++...+. |++.|
T Consensus 80 ~~v~e~aL~~~~G~~iI 96 (252)
T cd00740 80 WEVIEAGLKCCQGKCVV 96 (252)
T ss_pred HHHHHHHHhhCCCCcEE
Confidence 2344444544 77765
No 440
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.52 E-value=3.6 Score=42.13 Aligned_cols=214 Identities=12% Similarity=0.147 Sum_probs=116.4
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139 (311)
Q Consensus 60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~ 139 (311)
...-++.+.+.|+|.|-|=..+ ++.+.+...++.+++. +.-+.+-+........+.+...++++
T Consensus 98 v~~~v~~A~~~Gvd~irif~~l---------------nd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~a~ 161 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDAL---------------NDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVELAK 161 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEec---------------ChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHH
Confidence 3344566678899987764222 3445666667777664 44444333221222233557889999
Q ss_pred HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe----cCCCCHHHHHHHHhhcCEEEE--
Q psy2386 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN----GGIKTKKEIDLHLNYIDGVML-- 213 (311)
Q Consensus 140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n----GgI~s~~da~~~l~~adgVmi-- 213 (311)
.+.++|++.|.+-...+ ... |..-.++++.+++.+ ++||-.- .|.....-...+-.+||.|-.
T Consensus 162 ~l~~~Gad~I~i~Dt~G---~~~-------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai 230 (592)
T PRK09282 162 ELEEMGCDSICIKDMAG---LLT-------PYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAI 230 (592)
T ss_pred HHHHcCCCEEEECCcCC---CcC-------HHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeec
Confidence 99999999998864322 111 112357888999888 5887553 333333333333333554432
Q ss_pred ---ehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc--HHH
Q psy2386 214 ---GREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS--NKF 286 (311)
Q Consensus 214 ---gRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~--~~~ 286 (311)
|.+. +||.+-.-+. .|...+. ....+. +.+..+.+|+..... |... ........ .-|.+.+||. +.+
T Consensus 231 ~g~g~~a-gn~~~e~vv~-~L~~~g~-~~~idl-~~l~~~s~~~~~~~~~y~~~~~~~~~~~~--~v~~~~~pGg~~snl 304 (592)
T PRK09282 231 SPLAFGT-SQPPTESMVA-ALKGTPY-DTGLDL-ELLFEIAEYFREVRKKYKQFESEFTIVDT--RVLIHQVPGGMISNL 304 (592)
T ss_pred cccCCCc-CCHhHHHHHH-HHHhCCC-CCccCH-HHHHHHHHHHHHHHHHhhcCCCccccCCc--cEEEEcCCCcHHHHH
Confidence 3433 5777554332 2222211 122332 445555566555443 3210 01111111 1245789999 889
Q ss_pred HHHHhCCCCCCCChHHHHHHh
Q psy2386 287 KQILSKPNLLTIDNFQFFLNT 307 (311)
Q Consensus 287 r~~l~~~~~~~~~~~~~l~~~ 307 (311)
+..+.+..-.. ...++|+++
T Consensus 305 ~~q~~~~g~~d-~~~~vl~e~ 324 (592)
T PRK09282 305 VSQLKEQNALD-KLDEVLEEI 324 (592)
T ss_pred HHHHHHCCcHH-HHHHHHHHH
Confidence 99998887754 667777664
No 441
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.49 E-value=1.3 Score=39.49 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=75.8
Q ss_pred HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH-
Q psy2386 104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK- 182 (311)
Q Consensus 104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~- 182 (311)
++++.+.+. ++..=+|.. +.++..++++.+.+.|+..+-|.-||. ...+.|+++++
T Consensus 7 ~~~~~l~~~---~vi~Vvr~~-----~~~~a~~~~~al~~gGi~~iEiT~~tp---------------~a~~~i~~l~~~ 63 (222)
T PRK07114 7 AVLTAMKAT---GMVPVFYHA-----DVEVAKKVIKACYDGGARVFEFTNRGD---------------FAHEVFAELVKY 63 (222)
T ss_pred HHHHHHHhC---CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCCC---------------cHHHHHHHHHHH
Confidence 344444443 444446742 133678999999999999999988873 24566777653
Q ss_pred ---hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386 183 ---DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR 249 (311)
Q Consensus 183 ---~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
..|+ -++|.|-|.|++++++.++. ++.++.= --||.+.+...+. +-...+-..|+.|+...
T Consensus 64 ~~~~~p~-~~vGaGTVl~~e~a~~a~~aGA~FiVsP---~~~~~v~~~~~~~--~i~~iPG~~TpsEi~~A 128 (222)
T PRK07114 64 AAKELPG-MILGVGSIVDAATAALYIQLGANFIVTP---LFNPDIAKVCNRR--KVPYSPGCGSLSEIGYA 128 (222)
T ss_pred HHhhCCC-eEEeeEeCcCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCCEeCCCCCHHHHHHH
Confidence 3443 37999999999999999986 9887752 1456666554432 11111234677776654
No 442
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=93.47 E-value=2.4 Score=36.91 Aligned_cols=122 Identities=14% Similarity=0.227 Sum_probs=71.4
Q ss_pred EEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCC
Q psy2386 50 FQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDD 127 (311)
Q Consensus 50 ~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~ 127 (311)
++|+|-. +++. +.+.+.|+|.|-+-+--+++. .-+++.+.++.+.+.... .++|.+.-+
T Consensus 1 vKiCGi~~~ed~----~~a~~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn~~----- 61 (203)
T cd00405 1 VKICGITTLEDA----LAAAEAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVNED----- 61 (203)
T ss_pred CEECCCCCHHHH----HHHHHcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeCCC-----
Confidence 3566643 4433 444578999999975444332 124677777777665521 344433111
Q ss_pred CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH--
Q psy2386 128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL-- 205 (311)
Q Consensus 128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l-- 205 (311)
..++.+.+.+.|+|.|++|+.. +.+.+.++++.+ ..+++-.=++.+..+.....
T Consensus 62 ------~~~i~~ia~~~~~d~Vqlhg~e-----------------~~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~ 117 (203)
T cd00405 62 ------LEEILEIAEELGLDVVQLHGDE-----------------SPEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAY 117 (203)
T ss_pred ------HHHHHHHHHhcCCCEEEECCCC-----------------CHHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhc
Confidence 2455666788999999999763 235677777765 45555333455555543222
Q ss_pred hh-cCEEEEe
Q psy2386 206 NY-IDGVMLG 214 (311)
Q Consensus 206 ~~-adgVmig 214 (311)
.. +|.+++-
T Consensus 118 ~~~aD~il~d 127 (203)
T cd00405 118 AGEVDAILLD 127 (203)
T ss_pred cccCCEEEEc
Confidence 22 8988763
No 443
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=93.47 E-value=1 Score=40.25 Aligned_cols=141 Identities=12% Similarity=0.155 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCCEEEeccC--------------------------------------------C--Ccccc-ccCcc
Q psy2386 59 KLAKSAKIIQKWGYDEINLNCG--------------------------------------------C--PSNRV-QNGFF 91 (311)
Q Consensus 59 ~~~~aa~~~~~~g~d~IdiN~g--------------------------------------------C--P~~~v-~~~~~ 91 (311)
+..+||.+++++|+|+|-+|.= | |-... .+...
T Consensus 22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTeg 101 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEG 101 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCc
Confidence 3667888999999999988731 2 32222 24455
Q ss_pred cCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc
Q psy2386 92 GAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 171 (311)
Q Consensus 92 G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~ 171 (311)
|--+..+.+.+.++++.+++. ++.||+-+-+ + .+-++...+.|++.|-+|.... ...+.. .
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP-----d-----~~qi~~A~~~GAd~VELhTG~Y-a~a~~~-------~ 162 (234)
T cd00003 102 GLDVAGQAEKLKPIIERLKDA-GIRVSLFIDP-----D-----PEQIEAAKEVGADRVELHTGPY-ANAYDK-------A 162 (234)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC-----C-----HHHHHHHHHhCcCEEEEechhh-hcCCCc-------h
Confidence 777888999999999999985 8888886543 1 3456777999999999995531 111110 0
Q ss_pred CcHHHHHHH------HHhCCCCeEEEecCCCCHHHHHHHHh--hcCEEEEehhhhhC
Q psy2386 172 LKYNFVYNL------KKDFPELEIIINGGIKTKKEIDLHLN--YIDGVMLGREAYKN 220 (311)
Q Consensus 172 ~~~~~i~~i------~~~~~~ipvi~nGgI~s~~da~~~l~--~adgVmigRa~l~~ 220 (311)
.....+.++ +... .+-|-+.-|+ +++.+..+.. ...=|-||.+++.+
T Consensus 163 ~~~~el~~i~~aa~~a~~~-GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~ 217 (234)
T cd00003 163 EREAELERIAKAAKLAREL-GLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISR 217 (234)
T ss_pred hHHHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHH
Confidence 111123333 2233 4555555555 4566655543 37788888877553
No 444
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.46 E-value=0.97 Score=43.41 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=36.5
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
+..+|+.++.+++.. ++|||.= ||.+++|+..+.+. ||+|.|+
T Consensus 209 ~~~tW~di~wlr~~~-~~PiivK-gV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 209 RTLSWKDVQWLQTIT-KLPILVK-GVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCCCHHHHHHHHhcc-CCCEEee-cCCCHHHHHHHHHcCCCEEEEC
Confidence 457899999999987 7997764 56789999999987 9999983
No 445
>PRK01060 endonuclease IV; Provisional
Probab=93.36 E-value=0.9 Score=41.44 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce---eEEEE----eccCCCCC---
Q psy2386 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID---ITVKH----RIGIDDIN--- 129 (311)
Q Consensus 60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p---vsvKi----R~g~~~~~--- 129 (311)
+.++.+.+.+.|||+|||.+++|...... . .+++.+.++-+.+.+. ++. +++-. ++...+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~-----~--~~~~~~~~lk~~~~~~-gl~~~~~~~h~~~~~nl~~~d~~~r~ 85 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRK-----P--LEELNIEAFKAACEKY-GISPEDILVHAPYLINLGNPNKEILE 85 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCC-----C--CCHHHHHHHHHHHHHc-CCCCCceEEecceEecCCCCCHHHHH
Confidence 78889999999999999999998653211 1 2566666666555443 443 44422 22211111
Q ss_pred -cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH----HHHHHHHhCCCCeEEEe---c----CCCC
Q psy2386 130 -SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN----FVYNLKKDFPELEIIIN---G----GIKT 197 (311)
Q Consensus 130 -~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~----~i~~i~~~~~~ipvi~n---G----gI~s 197 (311)
..+.+...++.+.+.|+..|++|+... .... .....|+ .+.++.+....+.+..- + -+.+
T Consensus 86 ~s~~~~~~~i~~A~~lga~~vv~h~G~~-~~~~-------~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~ 157 (281)
T PRK01060 86 KSRDFLIQEIERCAALGAKLLVFHPGSH-LGDI-------DEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRR 157 (281)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCcC-CCCC-------cHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCC
Confidence 123455666777789999999996532 1110 0001343 23333222224554432 1 1358
Q ss_pred HHHHHHHHhhc
Q psy2386 198 KKEIDLHLNYI 208 (311)
Q Consensus 198 ~~da~~~l~~a 208 (311)
++++.++++.+
T Consensus 158 ~~~~~~l~~~v 168 (281)
T PRK01060 158 FEELARIIDGV 168 (281)
T ss_pred HHHHHHHHHhc
Confidence 89999888764
No 446
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.36 E-value=3.7 Score=35.67 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=76.8
Q ss_pred eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-ccee--EEEEecc
Q psy2386 48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDI--TVKHRIG 124 (311)
Q Consensus 48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pv--svKiR~g 124 (311)
+++-|=..++++..+.++.+ +-|++.||+....- ...-.++++.+++.. +..+ .+|+.
T Consensus 2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~----------------~~~g~~~i~~l~~~~~~~~i~~d~k~~-- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLI----------------KNEGIEAVKEMKEAFPDRKVLADLKTM-- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHH----------------HHhCHHHHHHHHHHCCCCEEEEEEeec--
Confidence 44555577888888888888 67899999941111 111235566665543 3333 34433
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEEe-cCCCC-HHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIIN-GGIKT-KKEI 201 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~n-GgI~s-~~da 201 (311)
+.+ ...++.+.++|+|+|++|+-+. +.. .+.+..+++ . +++++.. =+..+ .+++
T Consensus 63 -d~~------~~~~~~~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~-~-g~~~~~~~~~~~t~~~~~ 119 (206)
T TIGR03128 63 -DAG------EYEAEQAFAAGADIVTVLGVAD--------------DATIKGAVKAAKK-H-GKEVQVDLINVKDKVKRA 119 (206)
T ss_pred -cch------HHHHHHHHHcCCCEEEEeccCC--------------HHHHHHHHHHHHH-c-CCEEEEEecCCCChHHHH
Confidence 211 1237888999999999997542 011 244555554 4 6888754 24444 4777
Q ss_pred HHHHhh-cCEEEEehh
Q psy2386 202 DLHLNY-IDGVMLGRE 216 (311)
Q Consensus 202 ~~~l~~-adgVmigRa 216 (311)
..+.+. +|.|.+..+
T Consensus 120 ~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 120 KELKELGADYIGVHTG 135 (206)
T ss_pred HHHHHcCCCEEEEcCC
Confidence 777774 999987544
No 447
>KOG2550|consensus
Probab=93.26 E-value=0.17 Score=48.57 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCEEEEecCcc---ccc--cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNA---FLK--KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-I 208 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~---~~~--G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-a 208 (311)
.+-++.|-++|+|.+.|--... ..+ .-+|.++ ..+-++ +.+.+..+ .+|||+-|||.++-++.+.+.. |
T Consensus 303 ~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ---~TAVy~-va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGA 377 (503)
T KOG2550|consen 303 KEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQ---GTAVYK-VAEFANQF-GVPCIADGGIQNVGHVVKALGLGA 377 (503)
T ss_pred HHHHHHHHHccCceeEeccccCceeeeceeeeccCCc---ccchhh-HHHHHHhc-CCceeecCCcCccchhHhhhhcCc
Confidence 4667888899999998742211 111 1112211 223344 55666667 7999999999999999999987 9
Q ss_pred CEEEEehhh
Q psy2386 209 DGVMLGREA 217 (311)
Q Consensus 209 dgVmigRa~ 217 (311)
+.||+|.=+
T Consensus 378 stVMmG~lL 386 (503)
T KOG2550|consen 378 STVMMGGLL 386 (503)
T ss_pred hhheeccee
Confidence 999999543
No 448
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.24 E-value=6.1 Score=36.36 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=93.6
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.....|+++++++++.++..+-|+.+++.|+|+|-+-. |.. .-..++.+.+-.+.+.+++++||.+=-
T Consensus 64 ~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y----------~~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 64 VNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PYY----------NKPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred hCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--CcC----------CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34568999999999999999999999999999999852 332 112457777778888888889987643
Q ss_pred e---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCC
Q psy2386 122 R---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKT 197 (311)
Q Consensus 122 R---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s 197 (311)
- .|.+- ..++.++|.+.+ ..+ |-.- . ..|+..+.++.+..+ ++.|+...|
T Consensus 132 ~P~~tg~~l------~~~~l~~L~~~~-~v~---giK~--s-----------~~d~~~~~~l~~~~~~~~~v~~G~d--- 185 (285)
T TIGR00674 132 VPSRTGVSL------YPETVKRLAEEP-NIV---AIKE--A-----------TGNLERISEIKAIAPDDFVVLSGDD--- 185 (285)
T ss_pred CcHHhcCCC------CHHHHHHHHcCC-CEE---EEEe--C-----------CCCHHHHHHHHHhcCCCeEEEECch---
Confidence 2 23222 245666666543 211 1110 0 025666777766654 355444333
Q ss_pred HHHHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386 198 KKEIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY 232 (311)
Q Consensus 198 ~~da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~ 232 (311)
......+. ++||.+.|-+.+- |.++.++-+.+.
T Consensus 186 -~~~~~~~~~G~~G~i~~~~~~~-P~~~~~l~~a~~ 219 (285)
T TIGR00674 186 -ALTLPMMALGGKGVISVTANVA-PKLMKEMVNNAL 219 (285)
T ss_pred -HHHHHHHHcCCCEEEehHHHhh-HHHHHHHHHHHH
Confidence 22233343 3999998877633 456666655443
No 449
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.20 E-value=0.55 Score=40.65 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=65.3
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI 195 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI 195 (311)
|+..=+|.- + .++..++++.+.+.|++.|.+.-++. ...+.++++++.+| -..++.|.|
T Consensus 5 ~~~~i~r~~-~----~~~~~~~~~~l~~~G~~~vev~~~~~---------------~~~~~i~~l~~~~~-~~~iGag~v 63 (190)
T cd00452 5 PLVAVLRGD-D----AEDALALAEALIEGGIRAIEITLRTP---------------GALEAIRALRKEFP-EALIGAGTV 63 (190)
T ss_pred cEEEEEEcC-C----HHHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCC-CCEEEEEeC
Confidence 455556642 2 33578999999999999999986652 24568999998875 356899999
Q ss_pred CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386 196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~ 228 (311)
.+.+++..+++. +|+|+.+- .++.+.+..+
T Consensus 64 ~~~~~~~~a~~~Ga~~i~~p~---~~~~~~~~~~ 94 (190)
T cd00452 64 LTPEQADAAIAAGAQFIVSPG---LDPEVVKAAN 94 (190)
T ss_pred CCHHHHHHHHHcCCCEEEcCC---CCHHHHHHHH
Confidence 999999999986 99998763 3444444433
No 450
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=93.20 E-value=3.8 Score=39.97 Aligned_cols=151 Identities=13% Similarity=0.151 Sum_probs=88.3
Q ss_pred CCCCCCeEEEecC---CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccce
Q psy2386 42 NAEEHPIAFQVGD---NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEID 116 (311)
Q Consensus 42 ~~~~~p~~~Ql~g---~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~p 116 (311)
.....|+-.|++- .+|+.+..-++.+.+.| |..+.. .|=... .+....+.+.+-++++++. .+..
T Consensus 161 ~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~~~---------k~~~~~~~~~~ri~~lr~~g~~~~ 230 (408)
T TIGR01502 161 ETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLDGE---------KLLEYVKWLRDRIIKLGREGYAPI 230 (408)
T ss_pred cCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCCHH---------HhhhhHHHHHHHHHHhhccCCCCe
Confidence 3456788888752 46888877777777776 666554 333111 1122233344445555531 1334
Q ss_pred eEEEEec------cCCCCCcHHHHHHHHHHHHHcCCC-EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----C
Q psy2386 117 ITVKHRI------GIDDINSYDFVRDFVGTVSSAGCR-TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----P 185 (311)
Q Consensus 117 vsvKiR~------g~~~~~~~~~~~e~~~~l~~~G~~-~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~ 185 (311)
+.|-..- +|+. ++..++++.+++.... .+.+-.-.. . ..+..+++..+++++.+ .
T Consensus 231 l~vDaN~~~~~~~~~~~----~~ai~~l~~l~~~~~~~~~~iEqPv~-------~---~d~~~~~e~la~Lr~~~~~~~~ 296 (408)
T TIGR01502 231 FHIDVYGTIGEAFGVDI----KAMADYIQTLAEAAKPFHLRIEGPMD-------V---GSRQAQIEAMADLRAELDGRGV 296 (408)
T ss_pred EEEEcCCCcccccCCCH----HHHHHHHHHHHHhCccCCeEEecCCC-------C---CcchhhHHHHHHHHHHhhcCCC
Confidence 4444432 4433 3567888888874221 122321110 0 00012488888888772 2
Q ss_pred CCeEEEecCCCCHHHHHHHHhh--cCEEEEehh
Q psy2386 186 ELEIIINGGIKTKKEIDLHLNY--IDGVMLGRE 216 (311)
Q Consensus 186 ~ipvi~nGgI~s~~da~~~l~~--adgVmigRa 216 (311)
++||++.=.+.|++|+.++++. ||.|.+=-.
T Consensus 297 ~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~ 329 (408)
T TIGR01502 297 DAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTP 329 (408)
T ss_pred CceEEecCCCCCHHHHHHHHHhCCCCEEEeCcc
Confidence 7999999999999999999975 999998533
No 451
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=93.19 E-value=0.32 Score=43.99 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC-----cHHH
Q psy2386 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN-----SYDF 133 (311)
Q Consensus 59 ~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~-----~~~~ 133 (311)
.+.+-.+.+.+.||+.|||+-|+= =+ ..+.-.++++.+++. -+.|+.-+|..+.. +.+.
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti------------~l-~~~~r~~~I~~~~~~---Gf~v~~EvG~K~~~~~~~~~~~~ 148 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTI------------DL-PEEERLRLIRKAKEE---GFKVLSEVGKKDPESDFSLDPEE 148 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS----------------HHHHHHHHHHHCCT---TSEEEEEES-SSHHHHTT--CCH
T ss_pred hHHHHHHHHHHcCCCEEEecCCce------------eC-CHHHHHHHHHHHHHC---CCEEeecccCCCchhcccCCHHH
Confidence 355556778899999999985542 12 233344555555543 35677777765432 1235
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF 184 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~ 184 (311)
.++.++...++||++|++-+|..-..|... ..+..+.+.+.++.+.+
T Consensus 149 ~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~----~~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 149 LIEQAKRDLEAGADKVIIEARESGKGGIYD----NDGEVRTDLVEKIIERL 195 (244)
T ss_dssp HHHHHHHHHHHTECEEEE--TTT--STTB-----TTS-B-HHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCEEEEeeeccCCCCccC----CCCCccHHHHHHHHHhC
Confidence 778888899999999999999532224221 12446778888888766
No 452
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=93.19 E-value=1.3 Score=39.66 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCEEEeccC--------------------------------------------C--Ccccc-ccCccc
Q psy2386 60 LAKSAKIIQKWGYDEINLNCG--------------------------------------------C--PSNRV-QNGFFG 92 (311)
Q Consensus 60 ~~~aa~~~~~~g~d~IdiN~g--------------------------------------------C--P~~~v-~~~~~G 92 (311)
..+||.+++++|+|+|-+|.= | |-... .+...|
T Consensus 23 ~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegG 102 (237)
T TIGR00559 23 PLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGG 102 (237)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcC
Confidence 567888999999999988731 1 32222 244556
Q ss_pred CcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC
Q psy2386 93 AILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 172 (311)
Q Consensus 93 ~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~ 172 (311)
=.+..+.+.+.++++.++++ ++.||+-+-+ + .+-++...+.|++.|-+|.... ...++.. .
T Consensus 103 ldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP----~------~~qi~~A~~~GAd~VELhTG~Y-A~a~~~~-------~ 163 (237)
T TIGR00559 103 LDVARLKDKLCELVKRFHAA-GIEVSLFIDA----D------KDQISAAAEVGADRIEIHTGPY-ANAYNKK-------E 163 (237)
T ss_pred chhhhCHHHHHHHHHHHHHC-CCEEEEEeCC----C------HHHHHHHHHhCcCEEEEechhh-hcCCCch-------h
Confidence 67778899999999999885 8888876433 1 3556777999999999995542 1111110 1
Q ss_pred cHHHHHHHH------HhCCCCeEEEecCCCCHHHHHHHHhh---cCEEEEehhhhhC
Q psy2386 173 KYNFVYNLK------KDFPELEIIINGGIKTKKEIDLHLNY---IDGVMLGREAYKN 220 (311)
Q Consensus 173 ~~~~i~~i~------~~~~~ipvi~nGgI~s~~da~~~l~~---adgVmigRa~l~~ 220 (311)
..+.+.+++ ... .+-|-+.-|+ +++.+..+... .+=|-||.+++.+
T Consensus 164 ~~~el~~i~~aa~~A~~l-GL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~ 218 (237)
T TIGR00559 164 MAEELQRIVKASVHAHSL-GLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIAD 218 (237)
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHH
Confidence 011233332 233 4555555555 45666555432 6788888877543
No 453
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.18 E-value=1.7 Score=40.77 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i 177 (311)
.|+.+.+-++.+++.++.|+.|-+..- .. ...+.++.+.+.|++.|.++... ..+++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~-~~-----~~~~~~~~~~~~~v~~v~~~~g~-----------------p~~~i 102 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLL-SP-----FVDELVDLVIEEKVPVVTTGAGN-----------------PGKYI 102 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecC-CC-----CHHHHHHHHHhCCCCEEEEcCCC-----------------cHHHH
Confidence 589999999999998899998876542 11 12456777788999999875322 13578
Q ss_pred HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
.++++. .++|+. .|.|.+.+.++.+. +|+|.+
T Consensus 103 ~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 103 PRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 888875 578774 88999999888876 999987
No 454
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.16 E-value=1.5 Score=38.77 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386 132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDG 210 (311)
Q Consensus 132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adg 210 (311)
++...+++.|.+.|++.|-|.=|+. .-.+.|+++++.+| =-+|+.|-|-+++++.+..+. |+.
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp---------------~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~f 88 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTP---------------AALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQF 88 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCC---------------CHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCE
Confidence 3678999999999999999988873 35689999999986 568999999999999999976 886
Q ss_pred EEEehhhhhCCcchHHhHhhhccCCC--CCCCCCHHHHHHH
Q psy2386 211 VMLGREAYKNPFLMSNFDLNYYSNLP--QYKIPTRIDIINR 249 (311)
Q Consensus 211 VmigRa~l~~P~i~~~~~~~~~~~~~--~~~~~~~~~~~~~ 249 (311)
+.. |.+-.++.+.....+. .+-..|+.|+...
T Consensus 89 iVs-------P~~~~ev~~~a~~~~ip~~PG~~TptEi~~A 122 (211)
T COG0800 89 IVS-------PGLNPEVAKAANRYGIPYIPGVATPTEIMAA 122 (211)
T ss_pred EEC-------CCCCHHHHHHHHhCCCcccCCCCCHHHHHHH
Confidence 653 5555555443322222 1234567776644
No 455
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.11 E-value=4.6 Score=40.13 Aligned_cols=218 Identities=12% Similarity=0.166 Sum_probs=115.8
Q ss_pred CHHHHHHH-HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386 56 EPKKLAKS-AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 56 ~~~~~~~a-a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~ 134 (311)
-|+++.+. .+.+.+.|+|.|.|=.++ ++.+.+...++.+++. +..|..-+...+....+.+.+
T Consensus 92 ~~dDvv~~fv~~A~~~Gvd~irif~~l---------------nd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~e~~ 155 (467)
T PRK14041 92 YADDVVELFVKKVAEYGLDIIRIFDAL---------------NDIRNLEKSIEVAKKH-GAHVQGAISYTVSPVHTLEYY 155 (467)
T ss_pred ccchhhHHHHHHHHHCCcCEEEEEEeC---------------CHHHHHHHHHHHHHHC-CCEEEEEEEeccCCCCCHHHH
Confidence 35553333 566678899987775322 2345566666776664 444443333222223345678
Q ss_pred HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHhhcCE
Q psy2386 135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLNYIDG 210 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~~adg 210 (311)
.++++.+.++|++.|.+-.-.+ +. .|..-.++++.+++.+ ++||-.-+ |.....-...+-.+||.
T Consensus 156 ~~~a~~l~~~Gad~I~i~Dt~G----~l------~P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGad~ 224 (467)
T PRK14041 156 LEFARELVDMGVDSICIKDMAG----LL------TPKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADM 224 (467)
T ss_pred HHHHHHHHHcCCCEEEECCccC----Cc------CHHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCCCE
Confidence 8999999999999998854332 11 1123457889999988 58885544 33322222222233554
Q ss_pred EE-----EehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc
Q psy2386 211 VM-----LGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS 283 (311)
Q Consensus 211 Vm-----igRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~ 283 (311)
|- +|.++ +||.+-.- ...+.+.+. ....+. +.+..+.+|++.... |... .... ---..-|.+.+||+
T Consensus 225 vD~sv~~~g~ga-gN~atE~l-v~~L~~~g~-~tgiDl-~~L~~~~~~~~~vr~~y~~~~~~~~--~~~~~v~~~q~PGG 298 (467)
T PRK14041 225 FDTAISPFSMGT-SQPPFESM-YYAFRENGK-ETDFDR-KALKFLVEYFTKVREKYSEYDVGMK--SPDSRILVSQIPGG 298 (467)
T ss_pred EEeeccccCCCC-CChhHHHH-HHHHHhcCC-CCCcCH-HHHHHHHHHHHHHHHHHhhcCCCCC--CCCcCeeeCCCCcc
Confidence 43 34443 47764332 222222111 122333 445555556655444 2110 0010 00112245678886
Q ss_pred H--HHHHHHhCCCCCCCChHHHHHHh
Q psy2386 284 N--KFKQILSKPNLLTIDNFQFFLNT 307 (311)
Q Consensus 284 ~--~~r~~l~~~~~~~~~~~~~l~~~ 307 (311)
- .+++.+.+..... ...++++|+
T Consensus 299 ~~snl~~Ql~~~g~~~-~~~~v~~e~ 323 (467)
T PRK14041 299 MYSNLVKQLKEQKMLH-KLDKVLEEV 323 (467)
T ss_pred hHHHHHHHHHHCCcHh-HHHHHHHHH
Confidence 3 6777777777666 677777665
No 456
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.09 E-value=7.3 Score=36.06 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=95.0
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK 120 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK 120 (311)
.....|+++++++.+.++..+.++.+++.|+|+|-+- -|... -.+.+.+.+-.++|.+++ +.|+.+=
T Consensus 67 ~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~--~P~y~----------~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 67 AKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY----------KFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred hCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe--CCcCC----------CCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 4456799999999999999999999999999999983 24421 123566777777776655 6898775
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d 200 (311)
--.++...+ -..+++..+.+.+ ..+-+--- ..|+..+.++.+..+++.| .+|.= +.
T Consensus 135 n~P~~tg~~---l~~~~i~~L~~~p-nv~giK~s----------------~~d~~~~~~~~~~~~~~~v-~~G~d---~~ 190 (290)
T TIGR00683 135 SIPFLTGVN---MGIEQFGELYKNP-KVLGVKFT----------------AGDFYLLERLKKAYPNHLI-WAGFD---EM 190 (290)
T ss_pred eCccccccC---cCHHHHHHHhcCC-CEEEEEeC----------------CCCHHHHHHHHHhCCCCEE-EECch---HH
Confidence 333222111 1245566665532 11111100 0266777777776656644 45541 22
Q ss_pred HHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 201 IDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 201 a~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
+...+. +++|.+.+-+.+. |..+.++.+.+..
T Consensus 191 ~~~~l~~G~~G~i~~~~n~~-P~~~~~i~~~~~~ 223 (290)
T TIGR00683 191 MLPAASLGVDGAIGSTFNVN-GVRARQIFELTKA 223 (290)
T ss_pred HHHHHHCCCCEEEecHHHhC-HHHHHHHHHHHHC
Confidence 333333 4999998866653 7777777665543
No 457
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.08 E-value=2.7 Score=39.90 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCcccccc----CcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN----GFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS 130 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~----~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~ 130 (311)
.+.+++.+.|+.+.+.|++. .-|-..++.++ .|.| +.-.+++..+++..++|+..-+- +
T Consensus 104 Es~e~~~~~A~~lk~~ga~~---~r~~~fKpRTsp~sf~G~g-------~~gL~~L~~~~~~~Gl~v~tev~---d---- 166 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQI---LRGGAFKPRTSPYSFQGLG-------EEGLKLLAEAREETGLPIVTEVM---D---- 166 (335)
T ss_pred CCHHHHHHHHHHHHHhchhh---ccCcEecCCCCCccccccc-------HHHHHHHHHHHHHcCCcEEEeeC---C----
Confidence 46789999999999988763 33333333222 2333 33445777778888999876332 2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHhh
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TKKEIDLHLNY 207 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~~da~~~l~~ 207 (311)
.+-+..+.+. +|.+.|-+|+. -|+++++++.+. +.||+..=|.. |++++....+.
T Consensus 167 ----~~~~~~l~~~-vd~lqIgAr~~---------------~N~~LL~~va~~--~kPViLk~G~~~ti~E~l~A~e~ 222 (335)
T PRK08673 167 ----PRDVELVAEY-VDILQIGARNM---------------QNFDLLKEVGKT--NKPVLLKRGMSATIEEWLMAAEY 222 (335)
T ss_pred ----HHHHHHHHHh-CCeEEECcccc---------------cCHHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHH
Confidence 1234445666 89999998874 378888888764 68999888877 88887766653
No 458
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.00 E-value=6.3 Score=37.33 Aligned_cols=114 Identities=13% Similarity=0.211 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
..+++.+..+.+++.|.+.+-- .+|||.-| -||.-+.|..++..+.+ .++||.++.-..
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K-----IaS~~~~n~pLL~~~A~-----~gkPvilStGma 143 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFK-----IPSGEITNAPLLKKIAR-----FGKPVILSTGMA 143 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEE-----ECcccccCHHHHHHHHh-----cCCcEEEECCCC
Confidence 3566777777788877665432 46788776 46677889888776543 489999876542
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCC---EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCR---TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~---~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
+.+++...+..+.+.|.. .+.+|+-+. |.. ....+|+..|..+++.+ ++||..++
T Consensus 144 -----tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~-YP~-------~~~~~nL~~I~~Lk~~f-~~pVG~Sd 201 (329)
T TIGR03569 144 -----TLEEIEAAVGVLRDAGTPDSNITLLHCTTE-YPA-------PFEDVNLNAMDTLKEAF-DLPVGYSD 201 (329)
T ss_pred -----CHHHHHHHHHHHHHcCCCcCcEEEEEECCC-CCC-------CcccCCHHHHHHHHHHh-CCCEEECC
Confidence 234567777888888975 666785532 111 12236899999999998 79999874
No 459
>KOG4201|consensus
Probab=92.99 E-value=0.67 Score=40.93 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=57.6
Q ss_pred HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 215 (311)
Q Consensus 138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigR 215 (311)
.+++.+.|+..|-|..|.- ..| ..|+....++.+..| ++-+++-.||+|++|+..+-.. +.+|.+|.
T Consensus 199 m~raleiGakvvGvNNRnL--~sF---------eVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGE 267 (289)
T KOG4201|consen 199 MQRALEIGAKVVGVNNRNL--HSF---------EVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGE 267 (289)
T ss_pred HHHHHHhCcEEEeecCCcc--cee---------eechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecH
Confidence 4555566888888887762 222 257777788887765 4777888899999999999876 99999999
Q ss_pred hhhhCCcch
Q psy2386 216 EAYKNPFLM 224 (311)
Q Consensus 216 a~l~~P~i~ 224 (311)
.++....--
T Consensus 268 slmk~sDp~ 276 (289)
T KOG4201|consen 268 SLMKQSDPK 276 (289)
T ss_pred HHHhccCHH
Confidence 998765533
No 460
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=92.95 E-value=5.5 Score=40.74 Aligned_cols=218 Identities=13% Similarity=0.155 Sum_probs=118.3
Q ss_pred HHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 57 PKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 57 ~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
|++ ...-.+.+.+.|+|.|.|-..+ ++.+.+...++.+++. +.-|.+-+........+.+.+.
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~l---------------nd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~~~~~~~ 152 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDAL---------------NDPRNLQAAIQAAKKH-GAHAQGTISYTTSPVHTLETYL 152 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEec---------------CcHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHH
Confidence 444 3334566678899987775222 2335566777777664 4444433322222223445788
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHhhcCEE
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLNYIDGV 211 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~~adgV 211 (311)
++++.+.++|++.|.+-...+ ... |..-.++++++++.+ ++||-.-. |.....-...+-.+||.|
T Consensus 153 ~~~~~~~~~Gad~I~i~Dt~G---~~~-------P~~v~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa~~v 221 (582)
T TIGR01108 153 DLAEELLEMGVDSICIKDMAG---ILT-------PKAAYELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGADGI 221 (582)
T ss_pred HHHHHHHHcCCCEEEECCCCC---CcC-------HHHHHHHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 999999999999998854322 111 123467889999888 58875443 333333333333335544
Q ss_pred EE---eh-hhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc--
Q psy2386 212 ML---GR-EAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS-- 283 (311)
Q Consensus 212 mi---gR-a~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~-- 283 (311)
-. |= +..+||.+-.-+. .+.+.+. ....+ .+.+..+.+|+..... |... ...... ...-|.+.+||.
T Consensus 222 d~ai~GlG~~tGn~~le~vv~-~L~~~g~-~tgid-~~~L~~l~~~~~~v~~~Y~~~~~~~~~~--~~~v~~~e~pGG~~ 296 (582)
T TIGR01108 222 DTAISSMSGGTSHPPTETMVA-ALRGTGY-DTGLD-IELLLEIAAYFREVRKKYSQFEGQLKGP--DSRILVAQVPGGML 296 (582)
T ss_pred EeccccccccccChhHHHHHH-HHHhcCC-CcccC-HHHHHHHHHHHHHHHHHhhcCCCcccCC--CccEEEEcCCCchH
Confidence 33 31 2357777544332 2222111 01233 3455555666665444 2100 011111 112246789999
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHh
Q psy2386 284 NKFKQILSKPNLLTIDNFQFFLNT 307 (311)
Q Consensus 284 ~~~r~~l~~~~~~~~~~~~~l~~~ 307 (311)
+.++..+.+..-.. ...++|+++
T Consensus 297 snl~~ql~~~g~~~-~~~~vl~e~ 319 (582)
T TIGR01108 297 SNLESQLKEQNALD-KLDEVLEEI 319 (582)
T ss_pred HHHHHHHHHCCCHH-HHHHHHHHH
Confidence 88999998887665 677777665
No 461
>KOG3111|consensus
Probab=92.93 E-value=3.4 Score=36.02 Aligned_cols=131 Identities=16% Similarity=0.265 Sum_probs=85.7
Q ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124 (311)
Q Consensus 47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g 124 (311)
.+..+|..+|-..+++=.+.+.++|+|++-+.. |.=++|. .+=.-+|+++|++++.|....+-+-
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNi-------------T~G~pvV~slR~~~~~~~ffD~HmM 72 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNI-------------TFGPPVVESLRKHTGADPFFDVHMM 72 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCc-------------ccchHHHHHHHhccCCCcceeEEEe
Confidence 366778888888888888888899999877652 3333332 3334578899998877633333332
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeE--EEecCCCCHHHH
Q psy2386 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEI--IINGGIKTKKEI 201 (311)
Q Consensus 125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipv--i~nGgI~s~~da 201 (311)
..+ ..+++..+..+|++.+|+|---. -+ .+.++++++. .+.+ ..+=| ++.+++
T Consensus 73 V~~------Peq~V~~~a~agas~~tfH~E~~---------------q~~~~lv~~ir~~--Gmk~G~alkPg-T~Ve~~ 128 (224)
T KOG3111|consen 73 VEN------PEQWVDQMAKAGASLFTFHYEAT---------------QKPAELVEKIREK--GMKVGLALKPG-TPVEDL 128 (224)
T ss_pred ecC------HHHHHHHHHhcCcceEEEEEeec---------------cCHHHHHHHHHHc--CCeeeEEeCCC-CcHHHH
Confidence 222 46889999999999999995431 12 3677888875 2332 22222 456777
Q ss_pred HHHHhhcCEEEEe
Q psy2386 202 DLHLNYIDGVMLG 214 (311)
Q Consensus 202 ~~~l~~adgVmig 214 (311)
....+.+|.|.|=
T Consensus 129 ~~~~~~~D~vLvM 141 (224)
T KOG3111|consen 129 EPLAEHVDMVLVM 141 (224)
T ss_pred HHhhccccEEEEE
Confidence 7766668877663
No 462
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=92.93 E-value=0.71 Score=44.32 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=42.2
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE----ehhhhhCCcc
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML----GREAYKNPFL 223 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi----gRa~l~~P~i 223 (311)
+..+|+.|+++++.. ++||+.= ||.+++|++.+.+. +|+|.| ||.+...|.-
T Consensus 213 ~~~~w~~i~~l~~~~-~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~ 269 (367)
T TIGR02708 213 QKLSPRDIEEIAGYS-GLPVYVK-GPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAA 269 (367)
T ss_pred CCCCHHHHHHHHHhc-CCCEEEe-CCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcH
Confidence 457899999999987 7999977 59999999999987 999877 4555555543
No 463
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=92.85 E-value=2.4 Score=40.77 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=63.1
Q ss_pred CCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccccc--
Q psy2386 44 EEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-- 115 (311)
Q Consensus 44 ~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-- 115 (311)
.++|++.-++ |-|++.+++.+..+.+.|+|+|=.. .|-+.. ....++.+.+.+.++.+.+.++.
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~--------~~~eER~~~v~~av~~a~~~TG~~~ 199 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPY--------APFEERVRACMEAVRRANEETGRKT 199 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCccc--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4789888876 6679999999999999999998443 221111 11223445566666666655543
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R 154 (311)
++.+-+.- + .++..+.++.++++|++++.+-.-
T Consensus 200 ~y~~nit~--~----~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 200 LYAPNITG--D----PDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred eEEEEcCC--C----HHHHHHHHHHHHHcCCCEEEEecc
Confidence 33333321 1 136789999999999999987543
No 464
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.75 E-value=8.1 Score=38.71 Aligned_cols=214 Identities=11% Similarity=0.030 Sum_probs=111.3
Q ss_pred HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCCCcHHHHHHHHH
Q psy2386 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDFVG 139 (311)
Q Consensus 61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~~~~~~~~e~~~ 139 (311)
..-.+.+.+.|.|.|-|= +| ++|.+.+...++++++.-... ..+-+..+ ...+.+.+.++++
T Consensus 100 ~~fv~~a~~~Gidi~RIf--d~-------------lndv~nl~~ai~~vk~ag~~~~~~i~yt~s--p~~t~e~~~~~a~ 162 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVF--DA-------------LNDPRNLEHAMKAVKKVGKHAQGTICYTVS--PIHTVEGFVEQAK 162 (499)
T ss_pred HHHHHHHHHcCCCEEEEE--ec-------------CChHHHHHHHHHHHHHhCCeEEEEEEEecC--CCCCHHHHHHHHH
Confidence 334456677899987663 33 356688888888888764322 22222222 2334567899999
Q ss_pred HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEec----CCCCHHHHHHHHhhcCEE---
Q psy2386 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIING----GIKTKKEIDLHLNYIDGV--- 211 (311)
Q Consensus 140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nG----gI~s~~da~~~l~~adgV--- 211 (311)
.+.++|++.|.+-.-.+ +. .|..-.+++..+++.+| ++||-.-. |.....-...+-.+||.|
T Consensus 163 ~l~~~Gad~I~IkDtaG----ll------~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDta 232 (499)
T PRK12330 163 RLLDMGADSICIKDMAA----LL------KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTA 232 (499)
T ss_pred HHHHcCCCEEEeCCCcc----CC------CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEee
Confidence 99999999998854432 11 11234678999999885 68886554 333333332322334433
Q ss_pred EEehh-hhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHH-hHHHHhccCCCcH--HH
Q psy2386 212 MLGRE-AYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITR-HMLGLMKNIKGSN--KF 286 (311)
Q Consensus 212 migRa-~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k-~~~~~~~g~~~~~--~~ 286 (311)
+-|=| .-+||.+- .+...+.+.+. ....+. +.+..+.+|+..... +.. . ...++. ....|...+||+- .+
T Consensus 233 i~Glg~~aGn~atE-~vv~~L~~~g~-~tgiDl-~~L~~i~~~~~~vr~~y~~-~-~~~~~~~d~~v~~~qiPGGm~snl 307 (499)
T PRK12330 233 ISSMSLGPGHNPTE-SLVEMLEGTGY-TTKLDM-DRLLKIRDHFKKVRPKYKE-F-ESKTTGVETEIFKSQIPGGMLSNM 307 (499)
T ss_pred cccccccccchhHH-HHHHHHHhcCC-CCCCCH-HHHHHHHHHHHHHHHHHhc-c-cccccCCCCccccCCCCCCchhhH
Confidence 33311 12555532 22222322211 123343 445555666665544 211 0 001111 1122334577754 34
Q ss_pred HHHHhCCCCCCCChHHHHHHh
Q psy2386 287 KQILSKPNLLTIDNFQFFLNT 307 (311)
Q Consensus 287 r~~l~~~~~~~~~~~~~l~~~ 307 (311)
++.|....... ...++|+|+
T Consensus 308 ~~Ql~~~g~~d-~~~ev~~e~ 327 (499)
T PRK12330 308 ESQLKQQGAGD-RMDEVLEEV 327 (499)
T ss_pred HHHHHHcChhh-HHHHHHHHH
Confidence 55565555444 566666554
No 465
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.73 E-value=4.7 Score=38.76 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=76.4
Q ss_pred CCCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--c
Q psy2386 43 AEEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--I 115 (311)
Q Consensus 43 ~~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~ 115 (311)
-.++|++..+. |-+|+.+++.+..+...|+|.|-- |.|.+... .+.++.+.+.+.++...+.++ +
T Consensus 123 v~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~--------p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 123 IPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPFA--------PFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccCC--------CHHHHHHHHHHHHHHHHhhcCCcc
Confidence 35788877664 889999999999998899999833 34432211 122344556666666665554 4
Q ss_pred eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEe
Q psy2386 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIIN 192 (311)
Q Consensus 116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~n 192 (311)
++.+-+.- + .++..+.++.++++|++++-+..-+. -|+.+..+++.. . +||.+-
T Consensus 195 ~y~~Nita--~----~~em~~ra~~a~~~Ga~~vMv~~~~~----------------G~~~~~~l~~~~-~~l~i~aH 249 (364)
T cd08210 195 LYAPNVTG--P----PTQLLERARFAKEAGAGGVLIAPGLT----------------GLDTFRELAEDF-DFLPILAH 249 (364)
T ss_pred eEEEecCC--C----HHHHHHHHHHHHHcCCCEEEeecccc----------------hHHHHHHHHhcC-CCcEEEEc
Confidence 55554432 1 22578889999999999998764432 244556666664 5 777654
No 466
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=92.54 E-value=0.55 Score=42.78 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV 211 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV 211 (311)
+..++++.++++|+++|.|..-..+++| +++.+..+++.+ ++||...==|.++-++.+.... ||+|
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~~~F~G------------s~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaV 135 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEPKFFGG------------SLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAV 135 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--SCCCHH------------HHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCCC------------CHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEe
Confidence 3679999999999999999765544555 688999999998 8999999889999999988876 9999
Q ss_pred EEehhhhhCCc
Q psy2386 212 MLGREAYKNPF 222 (311)
Q Consensus 212 migRa~l~~P~ 222 (311)
.+=-+++.+-.
T Consensus 136 LLI~~~L~~~~ 146 (254)
T PF00218_consen 136 LLIAAILSDDQ 146 (254)
T ss_dssp EEEGGGSGHHH
T ss_pred ehhHHhCCHHH
Confidence 88766665533
No 467
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.52 E-value=2.2 Score=37.51 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=75.5
Q ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--c-CC
Q psy2386 50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--G-ID 126 (311)
Q Consensus 50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~--g-~~ 126 (311)
+-++-.++++. ..+++.|+|-|||+.+ . ..+ .| .|.. ..++.+++.+++||-|=||+ | |.
T Consensus 3 lEvcv~s~~~a----~~A~~~GAdRiELc~~-l----~~G----Gl--TPS~--g~i~~~~~~~~ipv~vMIRpr~gdF~ 65 (201)
T PF03932_consen 3 LEVCVESLEDA----LAAEAGGADRIELCSN-L----EVG----GL--TPSL--GLIRQAREAVDIPVHVMIRPRGGDFV 65 (201)
T ss_dssp EEEEESSHHHH----HHHHHTT-SEEEEEBT-G----GGT-----B-----H--HHHHHHHHHTTSEEEEE--SSSS-S-
T ss_pred EEEEeCCHHHH----HHHHHcCCCEEEECCC-c----cCC----Cc--CcCH--HHHHHHHhhcCCceEEEECCCCCCcc
Confidence 44555565554 4455889999999842 1 111 12 2332 44555666789999988886 2 11
Q ss_pred -CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec---CCCCHHHHH
Q psy2386 127 -DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING---GIKTKKEID 202 (311)
Q Consensus 127 -~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG---gI~s~~da~ 202 (311)
.+++.+...+-++.+.+.|++.+.+-.=+. . +..|.+.++++.+....+|+...= -+.++..+.
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~--d----------g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al 133 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE--D----------GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEAL 133 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET--T----------SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC--C----------CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHH
Confidence 122334555667788899999998854442 1 127888888888876568888765 344555555
Q ss_pred HHHhh--cCEEEEe
Q psy2386 203 LHLNY--IDGVMLG 214 (311)
Q Consensus 203 ~~l~~--adgVmig 214 (311)
+.+.. ++.|.-.
T Consensus 134 ~~L~~lG~~rVLTS 147 (201)
T PF03932_consen 134 EQLIELGFDRVLTS 147 (201)
T ss_dssp HHHHHHT-SEEEES
T ss_pred HHHHhcCCCEEECC
Confidence 55433 7766653
No 468
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.50 E-value=8.3 Score=35.26 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~ 134 (311)
-++++..+.++.+.++|+|.||+-+..... ....|.....+.+.+.++.+..+. +.++.+-+|.+..+
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~------- 84 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPE---KEFKGKSAFCDDEFLRRLLGDSKG--NTKIAVMVDYGNDD------- 84 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCc---cccCCCccCCCHHHHHHHHhhhcc--CCEEEEEECCCCCC-------
Confidence 367888999999999999999997654432 345677777788888887776531 34566655654321
Q ss_pred HHHHHHHHHcCCCEEEEe
Q psy2386 135 RDFVGTVSSAGCRTFIVH 152 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh 152 (311)
.+.++...+.|++.|.+.
T Consensus 85 ~~~l~~a~~~gv~~iri~ 102 (266)
T cd07944 85 IDLLEPASGSVVDMIRVA 102 (266)
T ss_pred HHHHHHHhcCCcCEEEEe
Confidence 244566677888887664
No 469
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=92.48 E-value=1.5 Score=42.02 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=35.4
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG 214 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig 214 (311)
+..+|+.|+++++.. ++|||.=|= .|++|+..+.+. +|+|.|+
T Consensus 210 ~~~~w~~i~~~~~~~-~~pvivKgv-~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQW-KLPVIVKGV-LSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp TT-SHHHHHHHHHHC-SSEEEEEEE--SHHHHHHHHHTT-SEEEEE
T ss_pred CCCCHHHHHHHhccc-CCceEEEec-ccHHHHHHHHhcCCCEEEec
Confidence 446899999999998 799998764 999999999987 9999995
No 470
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.48 E-value=8.8 Score=35.46 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=97.0
Q ss_pred CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH 121 (311)
Q Consensus 42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi 121 (311)
.....|++++++. +..+..+.++.+++.|+|+|-+ --|... ..+.+-+.+-.+++.+++++||.+=-
T Consensus 66 ~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~--~pP~y~----------~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 66 TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILL--LPPYLT----------EAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEE--CCCCCC----------CCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3456899999976 8888899999999999999987 233321 12467788888888888899998876
Q ss_pred eccCCCCCcHHHHHHHHHHHHH-cC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386 122 RIGIDDINSYDFVRDFVGTVSS-AG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199 (311)
Q Consensus 122 R~g~~~~~~~~~~~e~~~~l~~-~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~ 199 (311)
+.|.+- ..+++.+|.+ .+ +.++.-. ..|+..+.++.+..++--.+.+|. .+.+
T Consensus 133 ~~g~~l------~~~~l~~L~~~~pnivgiKds------------------~~d~~~~~~~~~~~~~~~~v~~G~-~~~d 187 (289)
T cd00951 133 RANAVL------TADSLARLAERCPNLVGFKDG------------------VGDIELMRRIVAKLGDRLLYLGGL-PTAE 187 (289)
T ss_pred CCCCCC------CHHHHHHHHhcCCCEEEEEeC------------------CCCHHHHHHHHHhcCCCeEEEeCC-Ccch
Confidence 665432 1455666655 32 2222111 026777777766653322344553 2222
Q ss_pred H-HHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386 200 E-IDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS 233 (311)
Q Consensus 200 d-a~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~ 233 (311)
. +...+. +++|.+.|-+.+ -|.++.++.+.+..
T Consensus 188 ~~~~~~l~~Ga~G~is~~~n~-~P~~~~~l~~~~~~ 222 (289)
T cd00951 188 VFALAYLAMGVPTYSSAVFNF-VPEIALAFYAAVRA 222 (289)
T ss_pred HhHHHHHHCCCCEEEechhhh-hHHHHHHHHHHHHc
Confidence 2 234443 499999887765 47777777665543
No 471
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.46 E-value=0.77 Score=42.66 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh--
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-- 207 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-- 207 (311)
.+.+.++++.+.+.|++.|.+.|-|.....++-. -..+.++.+.+.+. ++||++.=+-.|.+++.++.+.
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~-------Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLE-------ERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHH-------HHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHH
Confidence 4567888999999999999999888633333211 12344555554442 4899877666777777666542
Q ss_pred ---cCEEEEehhhhhCCc
Q psy2386 208 ---IDGVMLGREAYKNPF 222 (311)
Q Consensus 208 ---adgVmigRa~l~~P~ 222 (311)
||+||+.-..+..|.
T Consensus 93 ~~Gad~v~v~pP~y~~~~ 110 (294)
T TIGR02313 93 EAGADAAMVIVPYYNKPN 110 (294)
T ss_pred HcCCCEEEEcCccCCCCC
Confidence 999999999888773
No 472
>PLN02363 phosphoribosylanthranilate isomerase
Probab=92.35 E-value=3.3 Score=37.80 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=55.5
Q ss_pred eEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386 48 IAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID 126 (311)
Q Consensus 48 ~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~ 126 (311)
..++|+|- ++++. +.+.++|+|.|=+.+-.+++. .=+++.+.+|++.+....-.+|.|-..
T Consensus 47 ~~VKICGit~~eda----~~a~~~GaD~iGfIf~~~SpR----------~Vs~e~a~~I~~~l~~~~~~~VgVfv~---- 108 (256)
T PLN02363 47 PLVKMCGITSARDA----AMAVEAGADFIGMILWPKSKR----------SISLSVAKEISQVAREGGAKPVGVFVD---- 108 (256)
T ss_pred ceEEECCCCcHHHH----HHHHHcCCCEEEEecCCCCCC----------cCCHHHHHHHHHhccccCccEEEEEeC----
Confidence 46999996 45544 344578999999985444432 135788899988775421123333222
Q ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386 127 DINSYDFVRDFVGTVSSAGCRTFIVHARN 155 (311)
Q Consensus 127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt 155 (311)
.+ ..++++.+++.|.|.|.+||-.
T Consensus 109 --~~---~~~I~~~~~~~~ld~VQLHG~e 132 (256)
T PLN02363 109 --DD---ANTILRAADSSDLELVQLHGNG 132 (256)
T ss_pred --CC---HHHHHHHHHhcCCCEEEECCCC
Confidence 11 3467788899999999999864
No 473
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.25 E-value=3.6 Score=37.90 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~ 135 (311)
++.+...+++. +|.+.| |+.++++.+++.++-+. +.||-+|=-...... +..
T Consensus 96 ~~~~~~~~ae~-----vDilQI--------------gAr~~rntdLL~a~~~t-----~kpV~lKrGqf~s~~----e~~ 147 (281)
T PRK12457 96 EVEQAAPVAEV-----ADVLQV--------------PAFLARQTDLVVAIAKT-----GKPVNIKKPQFMSPT----QMK 147 (281)
T ss_pred CHHHHHHHhhh-----CeEEee--------------CchhhchHHHHHHHhcc-----CCeEEecCCCcCCHH----HHH
Q ss_pred HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-----------------CH
Q psy2386 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-----------------TK 198 (311)
Q Consensus 136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-----------------s~ 198 (311)
..++.+.+.|...|.+.-|-... ||.-. ..|...+..+++..+.+|||.---=. =+
T Consensus 148 ~aae~i~~~Gn~~vilcERG~~f-gy~~~------~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~ 220 (281)
T PRK12457 148 HVVSKCREAGNDRVILCERGSSF-GYDNL------VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVL 220 (281)
T ss_pred HHHHHHHHcCCCeEEEEeCCCCC-CCCCc------ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHH
Q ss_pred HHHHHHHhh-cCEEEE
Q psy2386 199 KEIDLHLNY-IDGVML 213 (311)
Q Consensus 199 ~da~~~l~~-adgVmi 213 (311)
.-++..+.. +||+|+
T Consensus 221 ~larAAvA~GaDGl~i 236 (281)
T PRK12457 221 DLARAGMAVGLAGLFL 236 (281)
T ss_pred HHHHHHHHhCCCEEEE
No 474
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=6.7 Score=37.46 Aligned_cols=80 Identities=10% Similarity=0.099 Sum_probs=47.7
Q ss_pred HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA 144 (311)
Q Consensus 65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~ 144 (311)
+.+.++|+|.|=+..- .-..+. . ++--..+.+.++++.+.+. ++.+.|=+..-.-++. .+.+.+.++.+.+.
T Consensus 20 ~~ai~~GADaVY~G~~--~~~~R~--~--a~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~~-~~~~~~~l~~l~e~ 91 (347)
T COG0826 20 KAAIAAGADAVYIGEK--EFGLRR--R--ALNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHNDE-LETLERYLDRLVEL 91 (347)
T ss_pred HHHHHcCCCEEEeCCc--cccccc--c--cccCCHHHHHHHHHHHHHc-CCeEEEEeccccccch-hhHHHHHHHHHHHc
Confidence 3344678898877522 111111 1 1112334478888887775 6666666555333322 33567899999999
Q ss_pred CCCEEEEe
Q psy2386 145 GCRTFIVH 152 (311)
Q Consensus 145 G~~~itvh 152 (311)
|+|+|++-
T Consensus 92 GvDaviv~ 99 (347)
T COG0826 92 GVDAVIVA 99 (347)
T ss_pred CCCEEEEc
Confidence 99999873
No 475
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=92.15 E-value=6.1 Score=34.79 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=79.4
Q ss_pred CeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE--EEEec
Q psy2386 47 PIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRI 123 (311)
Q Consensus 47 p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--vKiR~ 123 (311)
++++=+--.| |+....+++.+.++|+|.|-+|.... ++.+...++..++. +.-+. +.+.-
T Consensus 51 ~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g----------------~~~l~~~~~~~~~~-~~~v~~v~~lss 113 (213)
T TIGR01740 51 LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG----------------SESVEAAKEAASEG-GRGLLAVTELTS 113 (213)
T ss_pred CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC----------------HHHHHHHHHHhhcC-CCeEEEEEcCCC
Confidence 5666664233 45555556666789999999993221 34455555555443 22122 22221
Q ss_pred -cC-CCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-
Q psy2386 124 -GI-DDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK- 199 (311)
Q Consensus 124 -g~-~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~- 199 (311)
+. +.... .+...++++...+.|++.+..+ -+.+..+++..++ .++..+||+-..
T Consensus 114 ~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~---------------------~~~~~~ir~~~~~-~~~vtPGI~~~g~ 171 (213)
T TIGR01740 114 MGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCS---------------------AEEAKEIRKFTGD-FLILTPGIRLQSK 171 (213)
T ss_pred CChhhhCcCHHHHHHHHHHHhhhcCCeEEEeC---------------------HHHHHHHHHhcCC-ceEEeCCcCCCCC
Confidence 11 00111 2345666677777777766421 1335556665533 468888887431
Q ss_pred -H--------HHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386 200 -E--------IDLHLNY-IDGVMLGREAYKNPFLMSNF 227 (311)
Q Consensus 200 -d--------a~~~l~~-adgVmigRa~l~~P~i~~~~ 227 (311)
. ..++.+. +|.+.+||++++.+...+.+
T Consensus 172 ~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~ 209 (213)
T TIGR01740 172 GADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAA 209 (213)
T ss_pred CcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHH
Confidence 1 1444444 99999999999877654443
No 476
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=92.07 E-value=1.2 Score=44.52 Aligned_cols=107 Identities=16% Similarity=0.230 Sum_probs=70.6
Q ss_pred HHHHHHhcccccee-EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---------------------ccccC
Q psy2386 104 DCIKAMRDSVEIDI-TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA---------------------FLKKL 161 (311)
Q Consensus 104 ~iv~~v~~~~~~pv-svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---------------------~~~G~ 161 (311)
++|+.+|.. +-|+ .|-|..|..+ .++..|+++.|-..|+.++.+-+.+- |.+|-
T Consensus 112 rLv~kara~-G~~I~gvvIsAGIP~---le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGr 187 (717)
T COG4981 112 RLVQKARAS-GAPIDGVVISAGIPS---LEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGR 187 (717)
T ss_pred HHHHHHHhc-CCCcceEEEecCCCc---HHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCc
Confidence 456666653 4444 3556666554 34567888888888999988654431 12232
Q ss_pred CCCcCCCCCcCcHH--------HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh------------cCEEEEehhhhhCC
Q psy2386 162 NPKQNRKIPILKYN--------FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY------------IDGVMLGREAYKNP 221 (311)
Q Consensus 162 ~g~~~~~~~~~~~~--------~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~------------adgVmigRa~l~~P 221 (311)
.|. .-.|+ ...+++.. ++|-++..|||-|++++..+|.. .||+.+|+++|.-.
T Consensus 188 aGG------HHSweDld~llL~tYs~lR~~-~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 188 AGG------HHSWEDLDDLLLATYSELRSR-DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred cCC------ccchhhcccHHHHHHHHHhcC-CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhh
Confidence 221 11232 23455655 48999999999999999999841 89999999997654
No 477
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.07 E-value=0.79 Score=43.53 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=65.8
Q ss_pred CeEEEec----------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386 47 PIAFQVG----------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID 116 (311)
Q Consensus 47 p~~~Ql~----------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p 116 (311)
|+.+-+. |.+++++.+.++.+++.|+|.|++..|...... +..-.+.++.+++.+++|
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~------------~~~~~~~~~~ik~~~~ip 287 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP------------EDQPPDFLDFLRKAFKGP 287 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------cccchHHHHHHHHHcCCC
Confidence 6887764 457789999999999999999999777533221 122235566777778899
Q ss_pred eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF 184 (311)
Q Consensus 117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~ 184 (311)
|.+-=++ + . ....+.+++.++|.|.+ ||... +|-+++.++++..
T Consensus 288 vi~~G~i--~----~---~~a~~~l~~g~~D~V~~-gR~~l--------------adP~~~~k~~~g~ 331 (338)
T cd02933 288 LIAAGGY--D----A---ESAEAALADGKADLVAF-GRPFI--------------ANPDLVERLKNGA 331 (338)
T ss_pred EEEECCC--C----H---HHHHHHHHcCCCCEEEe-CHhhh--------------hCcCHHHHHhcCC
Confidence 8874332 2 1 22234445556998876 56421 3456677777643
No 478
>PLN02417 dihydrodipicolinate synthase
Probab=92.04 E-value=0.83 Score=42.13 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh--
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-- 207 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-- 207 (311)
.+.+.+.++.+.+.|++.|.+.|-+....-++-. -..+.++.+.+.+. ++||++.=+=.|.+++.++.+.
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~-------Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWD-------EHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHH-------HHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHH
Confidence 4467888999999999999999887633322211 12234444455442 4898876555566676666542
Q ss_pred ---cCEEEEehhhhhCC
Q psy2386 208 ---IDGVMLGREAYKNP 221 (311)
Q Consensus 208 ---adgVmigRa~l~~P 221 (311)
+|+||+.-..+..|
T Consensus 94 ~~Gadav~~~~P~y~~~ 110 (280)
T PLN02417 94 AVGMHAALHINPYYGKT 110 (280)
T ss_pred HcCCCEEEEcCCccCCC
Confidence 99999998877766
No 479
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.01 E-value=2 Score=37.15 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=63.9
Q ss_pred HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386 104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 183 (311)
Q Consensus 104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~ 183 (311)
++++.+.+. |+..=+|.. +.++..++++.+.+.|+..|.+.-++. ...+.+..+++.
T Consensus 4 ~~~~~l~~~---~~~~v~r~~-----~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------------~~~e~~~~~~~~ 60 (187)
T PRK07455 4 DWLAQLQQH---RAIAVIRAP-----DLELGLQMAEAVAAGGMRLIEITWNSD---------------QPAELISQLREK 60 (187)
T ss_pred HHHHHHHhC---CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCCC---------------CHHHHHHHHHHh
Confidence 344455443 455556752 233578899999999999999977653 234667777776
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386 184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR 215 (311)
Q Consensus 184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR 215 (311)
. ..-.++.|-+.+.+++...++. ||+|+++-
T Consensus 61 ~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 61 L-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred C-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 6 4556888999999999999987 99998874
No 480
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.00 E-value=0.89 Score=42.43 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN--- 206 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~--- 206 (311)
++.+.++++.+.+.|++.|.+-|-|+...-+|.. -..+.++.+++.+ .++|||+.-|=.+.+++.++-+
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~e-------Er~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLE-------ERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHH-------HHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHH
Confidence 4578889999999999999999888633333211 1223455555544 2489887655555566665553
Q ss_pred h--cCEEEEehhhhhCCc
Q psy2386 207 Y--IDGVMLGREAYKNPF 222 (311)
Q Consensus 207 ~--adgVmigRa~l~~P~ 222 (311)
. +||+|+-...|..|.
T Consensus 97 ~~Gad~il~v~PyY~k~~ 114 (299)
T COG0329 97 KLGADGILVVPPYYNKPS 114 (299)
T ss_pred hcCCCEEEEeCCCCcCCC
Confidence 2 999999999998886
No 481
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=91.84 E-value=9.4 Score=35.02 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=74.6
Q ss_pred HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH
Q psy2386 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS 143 (311)
Q Consensus 64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~ 143 (311)
++.+.++|++.|-++.= -.+.+.+.-.+ -.+.+...+.++.+++. +++|.+-+=+|..+ +.++..+.+..+.+
T Consensus 126 l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~l~~~-Gi~v~~~~i~Gl~e--t~~d~~~~~~~l~~ 198 (296)
T TIGR00433 126 AKRLKDAGLDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLENAKKA-GLKVCSGGIFGLGE--TVEDRIGLALALAN 198 (296)
T ss_pred HHHHHHcCCCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHHHHHHc-CCEEEEeEEEeCCC--CHHHHHHHHHHHHh
Confidence 45566777777666543 22222211111 13455666666666664 78877766666533 34567888888999
Q ss_pred cCCCEEEEecCccccccCCCCcCCCCCcCcH-H---HHHHHHHhCCCCeEEEecCCC-CHHHHHH--HHhh-cCEEEEe
Q psy2386 144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKY-N---FVYNLKKDFPELEIIINGGIK-TKKEIDL--HLNY-IDGVMLG 214 (311)
Q Consensus 144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~---~i~~i~~~~~~ipvi~nGgI~-s~~da~~--~l~~-adgVmig 214 (311)
.|++.+.+|.-+. ..|. +-.+ .++.+. + .+...+..+|+..|...|+=. ...+..+ .+.. ++++|+|
T Consensus 199 l~~~~i~l~~l~p-~~gT-~l~~--~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g 273 (296)
T TIGR00433 199 LPPESVPINFLVK-IKGT-PLAD--NKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVG 273 (296)
T ss_pred CCCCEEEeeeeEE-cCCC-ccCC--CCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEc
Confidence 9999988775443 1120 0011 122343 3 333444445554454444443 2223322 3444 9999987
No 482
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.82 E-value=2.7 Score=39.66 Aligned_cols=91 Identities=8% Similarity=-0.012 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHHhcc-ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH
Q psy2386 97 TKPLLVSDCIKAMRDS-VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175 (311)
Q Consensus 97 ~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~ 175 (311)
..|+.+.+.++.+++. .+.|+.|.+- .+..... ..+.++.+.+.++..+++++... +.
T Consensus 37 ~~~e~l~~~i~~~~~l~tdkPfGVnl~-~~~~~~~---~~~~l~vi~e~~v~~V~~~~G~P-----------------~~ 95 (320)
T cd04743 37 MRGEQVKALLEETAELLGDKPWGVGIL-GFVDTEL---RAAQLAVVRAIKPTFALIAGGRP-----------------DQ 95 (320)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEe-ccCCCcc---hHHHHHHHHhcCCcEEEEcCCCh-----------------HH
Confidence 3689999999999995 6899999884 3432221 24567777899999998875431 12
Q ss_pred HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 176 ~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+.++++. .+.|+ .-+.|++.++++.+. ||+|++
T Consensus 96 -~~~lk~~--Gi~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 96 -ARALEAI--GISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -HHHHHHC--CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 5677764 68877 668999999998877 999886
No 483
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=91.80 E-value=0.72 Score=41.87 Aligned_cols=96 Identities=11% Similarity=0.126 Sum_probs=68.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEE---EEe------cCccccccCCCCcCCCCC-cCcHHHHHHHHHhCCCCeEEEec
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTF---IVH------ARNAFLKKLNPKQNRKIP-ILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~i---tvh------~Rt~~~~G~~g~~~~~~~-~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
|...-++.+.+.+.++.+.+.|+... ..- +||. ..+|.|. + .--++++.++++.+ .+||+.
T Consensus 8 GPCsvEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTs-p~sFqG~-----G~eeGL~iL~~vk~~~-glpvvT-- 78 (258)
T TIGR01362 8 GPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSS-IHSFRGP-----GLEEGLKILQKVKEEF-GVPILT-- 78 (258)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCC-CCCCCCC-----CHHHHHHHHHHHHHHh-CCceEE--
Confidence 33444455567888888888765432 222 6664 2223222 1 12478899999998 899988
Q ss_pred CCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhH
Q psy2386 194 GIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD 228 (311)
Q Consensus 194 gI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~ 228 (311)
+|.+++++....+.+|.++||-=++.|-.+...+.
T Consensus 79 eV~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g 113 (258)
T TIGR01362 79 DVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAA 113 (258)
T ss_pred EeCCHHHHHHHHhhCcEEEeCchhcchHHHHHHHh
Confidence 99999999999888999999988888877776654
No 484
>TIGR03586 PseI pseudaminic acid synthase.
Probab=91.75 E-value=7.7 Score=36.73 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386 57 PKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125 (311)
Q Consensus 57 ~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~ 125 (311)
.+++.+..+.+++.|.+.+-- .+|+|.-| .||.-++|..++..+.+ .++||.+|.-..
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K-----I~S~~~~n~~LL~~va~-----~gkPvilstG~~- 144 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYK-----IASFEITDLPLIRYVAK-----TGKPIIMSTGIA- 144 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEE-----ECCccccCHHHHHHHHh-----cCCcEEEECCCC-
Confidence 466677777788888665432 35677766 46667789888776543 489999876542
Q ss_pred CCCCcHHHHHHHHHHHHHcCC-CEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386 126 DDINSYDFVRDFVGTVSSAGC-RTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING 193 (311)
Q Consensus 126 ~~~~~~~~~~e~~~~l~~~G~-~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG 193 (311)
+.+++...+..+.+.|. +.+.+|+ +..|. + ....+|+..|..+++.+ ++||..++
T Consensus 145 ----t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP--~-----~~~~~nL~~i~~lk~~f-~~pVG~SD 200 (327)
T TIGR03586 145 ----TLEEIQEAVEACREAGCKDLVLLKC-TSSYP--A-----PLEDANLRTIPDLAERF-NVPVGLSD 200 (327)
T ss_pred ----CHHHHHHHHHHHHHCCCCcEEEEec-CCCCC--C-----CcccCCHHHHHHHHHHh-CCCEEeeC
Confidence 23456777788889998 4566785 32221 1 12236899999999998 79997764
No 485
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.74 E-value=7.7 Score=34.82 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHH
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFV 134 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~ 134 (311)
+.++..+.++.+.++|++.||+-.+.|.+.+ .++.++ .++++.+++.. +.++.+=+|.+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-------p~~~~~---~~~i~~l~~~~~~~~~~~l~~~~---------- 76 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV-------PQMEDD---WEVLRAIRKLVPNVKLQALVRNR---------- 76 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc-------ccCCCH---HHHHHHHHhccCCcEEEEEccCc----------
Confidence 6788888899999999999999988876543 233333 45566666654 45554444432
Q ss_pred HHHHHHHHHcCCCEEEEec
Q psy2386 135 RDFVGTVSSAGCRTFIVHA 153 (311)
Q Consensus 135 ~e~~~~l~~~G~~~itvh~ 153 (311)
.+.++.+.++|++.|.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~ 95 (265)
T cd03174 77 EKGIERALEAGVDEVRIFD 95 (265)
T ss_pred hhhHHHHHhCCcCEEEEEE
Confidence 3567888999999998753
No 486
>PLN02417 dihydrodipicolinate synthase
Probab=91.71 E-value=3.5 Score=37.96 Aligned_cols=85 Identities=7% Similarity=-0.095 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD 132 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~ 132 (311)
=|.+.+.+-++.+.+.|+++|=+| +..|-+..-..+.-.++++.+.+.+ .+||.+-+-. .+ .+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~----~~-t~ 83 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS----NS-TR 83 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------ccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC----cc-HH
Confidence 477888888998888999999887 2234444444554456666665554 3677664332 11 23
Q ss_pred HHHHHHHHHHHcCCCEEEEecC
Q psy2386 133 FVRDFVGTVSSAGCRTFIVHAR 154 (311)
Q Consensus 133 ~~~e~~~~l~~~G~~~itvh~R 154 (311)
+.+++++.++++|+|++.+.+-
T Consensus 84 ~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 84 EAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 6789999999999999988654
No 487
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=91.62 E-value=9 Score=33.71 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=64.5
Q ss_pred EEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386 50 FQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 128 (311)
Q Consensus 50 ~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~ 128 (311)
+.|+|- ++++. +.+.++|+|.|=+.+--+++. .=+++.+.+|++.+...+ .+|.|-...
T Consensus 3 vKICGit~~eda----~~~~~~GaD~iGfIf~~~SpR----------~V~~~~a~~i~~~~~~~~-~~VgVf~~~----- 62 (207)
T PRK13958 3 LKFCGFTTIKDV----TAASQLPIDAIGFIHYEKSKR----------HQTITQIKKLASAVPNHI-DKVCVVVNP----- 62 (207)
T ss_pred EEEcCCCcHHHH----HHHHHcCCCEEEEecCCCCcc----------cCCHHHHHHHHHhCCCCC-CEEEEEeCC-----
Confidence 678885 44544 345578999998875433332 135788888888775432 234443221
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386 129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII 190 (311)
Q Consensus 129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi 190 (311)
+ ..++.+.++..|.|.|.+||-. +.+++.++++..|.++++
T Consensus 63 -~---~~~i~~~~~~~~~d~vQLHG~e-----------------~~~~~~~l~~~~~~~~ii 103 (207)
T PRK13958 63 -D---LTTIEHILSNTSINTIQLHGTE-----------------SIDFIQEIKKKYSSIKII 103 (207)
T ss_pred -C---HHHHHHHHHhCCCCEEEECCCC-----------------CHHHHHHHhhcCCCceEE
Confidence 1 3466777789999999999853 346788888765456665
No 488
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=91.61 E-value=0.3 Score=41.92 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM 212 (311)
Q Consensus 134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm 212 (311)
+..-.+.+++...|++-+-+.. --..++++++.+ ++|||+.|=|.+.+|+.++++. |++|.
T Consensus 106 l~~~~~~i~~~~PD~vEilPg~-----------------~p~vi~~i~~~~-~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 106 LETGIKQIEQSKPDAVEILPGV-----------------MPKVIKKIREET-NIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHHHHHHHHHT-SEEEEESCC-----------------HHHHHCCCCCCC-SS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHhhcCCCEEEEchHH-----------------HHHHHHHHHHhc-CCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 4455677888999999886542 235678888887 7999999999999999999987 99999
Q ss_pred Eehhhh
Q psy2386 213 LGREAY 218 (311)
Q Consensus 213 igRa~l 218 (311)
...--+
T Consensus 168 TS~~~L 173 (175)
T PF04309_consen 168 TSNKEL 173 (175)
T ss_dssp E--HHH
T ss_pred cCChHh
Confidence 876544
No 489
>KOG0538|consensus
Probab=91.44 E-value=1.3 Score=41.28 Aligned_cols=51 Identities=22% Similarity=0.396 Sum_probs=40.7
Q ss_pred CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE----ehhhhhCCc
Q psy2386 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML----GREAYKNPF 222 (311)
Q Consensus 170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi----gRa~l~~P~ 222 (311)
+..+|+.|+.++... ++||+.-| |.+.+||....+. ++|+++ ||.+=.-|.
T Consensus 208 ~Sl~W~Di~wLr~~T-~LPIvvKG-ilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpA 263 (363)
T KOG0538|consen 208 PSLSWKDIKWLRSIT-KLPIVVKG-VLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPA 263 (363)
T ss_pred CCCChhhhHHHHhcC-cCCeEEEe-ecccHHHHHHHHhCCceEEEeCCCccccCcccc
Confidence 346899999999987 89988765 7788999999987 999999 455544444
No 490
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.43 E-value=4.8 Score=35.62 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177 (311)
Q Consensus 98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i 177 (311)
+++.+.++++.+++..+.|+.+.+....... ...++++.+.++|++.|++++.. ..+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~----~~~~~~~~~~~~g~d~v~l~~~~-----------------~~~~~ 95 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNP----DFEALLEVALEEGVPVVSFSFGP-----------------PAEVV 95 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCc----CHHHHHHHHHhCCCCEEEEcCCC-----------------CHHHH
Confidence 5778888888888765567666655532111 13578888999999999997541 23556
Q ss_pred HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML 213 (311)
Q Consensus 178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi 213 (311)
+++++. +++++.. +.+.+++.++.+. +|++.+
T Consensus 96 ~~~~~~--~i~~i~~--v~~~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 96 ERLKAA--GIKVIPT--VTSVEEARKAEAAGADALVA 128 (236)
T ss_pred HHHHHc--CCEEEEe--CCCHHHHHHHHHcCCCEEEE
Confidence 666653 5787764 6788888877665 898876
No 491
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.40 E-value=2.4 Score=39.80 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=61.1
Q ss_pred CCCCCeEEEec-C-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386 43 AEEHPIAFQVG-D-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120 (311)
Q Consensus 43 ~~~~p~~~Ql~-g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK 120 (311)
+.+.||.+-+. | .+.+.+.+.++.++++|+|.|.++.+.+. .+|.+... |+ +.++.+++.+++||..-
T Consensus 131 ~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~-----~~y~g~~~-~~----~~i~~ik~~~~iPVi~n 200 (312)
T PRK10550 131 PAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE-----DGYRAEHI-NW----QAIGEIRQRLTIPVIAN 200 (312)
T ss_pred CCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc-----cCCCCCcc-cH----HHHHHHHhhcCCcEEEe
Confidence 34679998864 3 44566889999999999999999965432 23322111 34 45666777778898652
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN 155 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt 155 (311)
|.-. + ..+..+.++..|+|.|.+ ||-
T Consensus 201 ---GdI~--t---~~da~~~l~~~g~DgVmi-GRg 226 (312)
T PRK10550 201 ---GEIW--D---WQSAQQCMAITGCDAVMI-GRG 226 (312)
T ss_pred ---CCcC--C---HHHHHHHHhccCCCEEEE-cHH
Confidence 2111 1 234556667899999987 664
No 492
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.37 E-value=5.4 Score=37.93 Aligned_cols=162 Identities=12% Similarity=0.116 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec-------cCCCccccccCcccCcccC-----ChHHHHHHHHHHhcc
Q psy2386 45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN-------CGCPSNRVQNGFFGAILMT-----KPLLVSDCIKAMRDS 112 (311)
Q Consensus 45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~G~~Ll~-----~~~~~~~iv~~v~~~ 112 (311)
..|+++ =.| .....+..+.+.+.|+.+|.+- .|-|.+.+.......++++ ++. +...++.+++.
T Consensus 59 ~nPi~~-AsG--~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g-~~~~~~~l~~~ 134 (344)
T PRK05286 59 PNPVGL-AAG--FDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDG-ADALAERLKKA 134 (344)
T ss_pred CCCCEE-CCC--CCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHh-HHHHHHHHHHh
Confidence 356654 223 3345566677888999999985 3445554432111122332 321 34444445443
Q ss_pred -ccceeEEEEecc--CCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcHHHHHHHHHhCC--
Q psy2386 113 -VEIDITVKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-- 185 (311)
Q Consensus 113 -~~~pvsvKiR~g--~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-- 185 (311)
.++||.|-+--. .+.....+++.+.++.+.+ ++|+|.+- +.. ..|. .....+..-.+.++++++.+.
T Consensus 135 ~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~--~~g~---~~~~~~~~~~eiv~aVr~~~~~~ 208 (344)
T PRK05286 135 YRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPN--TPGL---RDLQYGEALDELLAALKEAQAEL 208 (344)
T ss_pred cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCC--CCCc---ccccCHHHHHHHHHHHHHHHhcc
Confidence 578887766321 1112233445555555544 49999863 111 1110 000111122366777887763
Q ss_pred --CCeEEE--ecCCCC--HHHHHHHHhh--cCEEEEehh
Q psy2386 186 --ELEIII--NGGIKT--KKEIDLHLNY--IDGVMLGRE 216 (311)
Q Consensus 186 --~ipvi~--nGgI~s--~~da~~~l~~--adgVmigRa 216 (311)
++||+. +-++.. ..++.+.++. +|+|.+--.
T Consensus 209 ~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 209 HGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 288863 334432 3334444433 999988533
No 493
>PRK08444 hypothetical protein; Provisional
Probab=91.32 E-value=3.1 Score=39.82 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE-----------ec
Q psy2386 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-----------RI 123 (311)
Q Consensus 55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi-----------R~ 123 (311)
-+++++.+.|+.+.+.|+..|-|-.|..-. .+.+.+.++++.+++... .+.++. ..
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~------------~~~e~y~e~ir~Ik~~~p-~i~i~a~s~~Ei~~~a~~~ 146 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPN------------YGYEWYLEIFKKIKEAYP-NLHVKAMTAAEVDFLSRKF 146 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCC------------CCHHHHHHHHHHHHHHCC-CceEeeCCHHHHHHHHHHc
Confidence 489999999999999999999998553211 256889999999998631 266664 33
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc-----ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE---EecCC
Q psy2386 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL-----KKLNPKQNRKIPILKYNFVYNLKKDFPELEII---INGGI 195 (311)
Q Consensus 124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~-----~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi---~nGgI 195 (311)
|.. ..+.++.|.++|++.+. |+.-..+ .-.++. .....+|..+.+.+... .+++- .-|=+
T Consensus 147 g~~-------~~e~l~~LkeAGl~~~~-g~~aEi~~~~vr~~I~p~---k~~~~~~~~i~~~a~~~-Gi~~~sg~l~G~g 214 (353)
T PRK08444 147 GKS-------YEEVLEDMLEYGVDSMP-GGGAEIFDEEVRKKICKG---KVSSERWLEIHKYWHKK-GKMSNATMLFGHI 214 (353)
T ss_pred CCC-------HHHHHHHHHHhCcccCC-CCCchhcCHHHHhhhCCC---CCCHHHHHHHHHHHHHc-CCCccceeEEecC
Confidence 332 35788999999999653 2111111 222322 11123566665544444 56653 33555
Q ss_pred CCHHHHHHHHh
Q psy2386 196 KTKKEIDLHLN 206 (311)
Q Consensus 196 ~s~~da~~~l~ 206 (311)
.|++|-.+++.
T Consensus 215 Et~edrv~hl~ 225 (353)
T PRK08444 215 ENREHRIDHML 225 (353)
T ss_pred CCHHHHHHHHH
Confidence 89999888875
No 494
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=91.30 E-value=4.6 Score=35.67 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=77.1
Q ss_pred EEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386 50 FQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI 128 (311)
Q Consensus 50 ~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~ 128 (311)
+-|||- ++++. +.+.++|+|.+=+=+-=+++.. -+++.+.+|++++.. +. .|.|-..
T Consensus 4 vKICGlt~~eda----~~a~~~gad~iG~If~~~SpR~----------Vs~~~a~~i~~~v~~-~~-~VgVf~n------ 61 (208)
T COG0135 4 VKICGLTRLEDA----KAAAKAGADYIGFIFVPKSPRY----------VSPEQAREIASAVPK-VK-VVGVFVN------ 61 (208)
T ss_pred eEECCCCCHHHH----HHHHHcCCCEEEEEEcCCCCCc----------CCHHHHHHHHHhCCC-CC-EEEEECC------
Confidence 445664 35544 4455789998877655544431 357888999888765 21 3444322
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH---HHHHH
Q psy2386 129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE---IDLHL 205 (311)
Q Consensus 129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d---a~~~l 205 (311)
.+ ..++.+.+++.+.+.|.+||-. +.+++.++++.. ++||+-.=.+.+..+ +....
T Consensus 62 ~~---~~~i~~i~~~~~ld~VQlHG~e-----------------~~~~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~ 120 (208)
T COG0135 62 ES---IEEILEIAEELGLDAVQLHGDE-----------------DPEYIDQLKEEL-GVPVIKAISVSEEGDLELAAREE 120 (208)
T ss_pred CC---HHHHHHHHHhcCCCEEEECCCC-----------------CHHHHHHHHhhc-CCceEEEEEeCCccchhhhhhcc
Confidence 22 3467778899999999999863 678899999886 567654444443322 11111
Q ss_pred hhcCEEEEeh
Q psy2386 206 NYIDGVMLGR 215 (311)
Q Consensus 206 ~~adgVmigR 215 (311)
..+|.+++=.
T Consensus 121 ~~~d~~LlDa 130 (208)
T COG0135 121 GPVDAILLDA 130 (208)
T ss_pred CCccEEEEcC
Confidence 2288888744
No 495
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=91.15 E-value=7.8 Score=35.45 Aligned_cols=143 Identities=14% Similarity=0.142 Sum_probs=82.6
Q ss_pred CCCeEEEecCCC-HHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEE
Q psy2386 45 EHPIAFQVGDNE-PKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKH 121 (311)
Q Consensus 45 ~~p~~~Ql~g~~-~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKi 121 (311)
+.++++=+-=.| |+.+..+|+.+. ..|+|.|-+|. +++ .+-+...++...+. ..+-|+|++
T Consensus 86 g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~-----------~~G-----~d~l~~~~~~~~~~~~~v~VlvlT 149 (261)
T TIGR02127 86 GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSP-----------YLG-----LDSLRPFLEYARANGAGIFVLVKT 149 (261)
T ss_pred CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECC-----------cCC-----HHHHHHHHHHHhhcCCEEEEEEeC
Confidence 457777776555 456777776555 78999999992 222 23344444443321 245677777
Q ss_pred ec-cCCC-------C--CcHHHHHHHHHHHHHc----CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386 122 RI-GIDD-------I--NSYDFVRDFVGTVSSA----GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 187 (311)
Q Consensus 122 R~-g~~~-------~--~~~~~~~e~~~~l~~~----G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i 187 (311)
.. +..+ . .-++...++++.+.+. |.+.+.+ |-|. -+.++++++.+|+.
T Consensus 150 Snp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~-gAT~-----------------p~e~~~iR~~~~~~ 211 (261)
T TIGR02127 150 SNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVV-GATS-----------------PGDLLRLRIEMPTA 211 (261)
T ss_pred CCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEE-CCCC-----------------HHHHHHHHHhCCCC
Confidence 65 3111 0 1123444555555443 5666655 3331 24577777776677
Q ss_pred eEEEec----CCCCHHHHHHHHhh--cC-EEEEehhhhhCCc
Q psy2386 188 EIIING----GIKTKKEIDLHLNY--ID-GVMLGREAYKNPF 222 (311)
Q Consensus 188 pvi~nG----gI~s~~da~~~l~~--ad-gVmigRa~l~~P~ 222 (311)
+++.=| | .+.+|..+.+.. ++ .+.+||+++.-+.
T Consensus 212 ~il~PGigaqG-~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~ 252 (261)
T TIGR02127 212 PFLVPGFGAQG-AEAADLRGLFGADGSGLLINSSRGVLFAGP 252 (261)
T ss_pred eEEeCCcCCCC-CCHHHHHHHhcccCCCEEEEcCHHHhcCCC
Confidence 665433 2 367888776642 77 7999999865443
No 496
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.12 E-value=16 Score=37.54 Aligned_cols=270 Identities=10% Similarity=0.090 Sum_probs=144.7
Q ss_pred CCHHHHHHHHHhCCCcEEEecceecccc------c-CCchhcccc---CCCCCCeEEEecCCC-------HHHHHH-HHH
Q psy2386 4 TDRHCRMFHRQITRYSWLYTEMFTTQAI------L-GNKKHCLDF---NAEEHPIAFQVGDNE-------PKKLAK-SAK 65 (311)
Q Consensus 4 td~~fR~l~~~~g~~~l~~temv~a~~l------~-~~~~~~l~~---~~~~~p~~~Ql~g~~-------~~~~~~-aa~ 65 (311)
+...+..+|..+-.+++..-|+-.-..+ + .+.+++|+. .-.+.|+-.=+-|.| |+++.+ ..+
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 3444556666655555666666543332 1 123333321 223455555454443 555444 556
Q ss_pred HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcC
Q psy2386 66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG 145 (311)
Q Consensus 66 ~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G 145 (311)
.+.+.|.|.+-|=- -+++.+.+..-++++++. +.-+-.-|..-.+...+.+.+.++++.+++.|
T Consensus 104 ~a~~~Gidv~Rifd---------------~lnd~~n~~~~i~~~k~~-G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G 167 (596)
T PRK14042 104 LAVNNGVDVFRVFD---------------ALNDARNLKVAIDAIKSH-KKHAQGAICYTTSPVHTLDNFLELGKKLAEMG 167 (596)
T ss_pred HHHHcCCCEEEEcc---------------cCcchHHHHHHHHHHHHc-CCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 77888988887732 247788888888888875 44333332222233445667899999999999
Q ss_pred CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHhhcCEEEE-----ehh
Q psy2386 146 CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLNYIDGVML-----GRE 216 (311)
Q Consensus 146 ~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~~adgVmi-----gRa 216 (311)
++.|.+-.-.+ +. .|..-.+++..+++.+ ++||-.-+ |.....-...+-.+||.|=. |.+
T Consensus 168 ad~I~IkDtaG----~l------~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~ 236 (596)
T PRK14042 168 CDSIAIKDMAG----LL------TPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGG 236 (596)
T ss_pred CCEEEeCCccc----CC------CHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence 99998854322 11 1223467899999988 69986554 33322222222223554432 222
Q ss_pred hhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCcH--HHHHHHhC
Q psy2386 217 AYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGSN--KFKQILSK 292 (311)
Q Consensus 217 ~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~~--~~r~~l~~ 292 (311)
.+||.+-.-+ ..+.+.+. ....+. +.+..+.+|+..... |... ...... -..-|.+.+||+- .+++.+.+
T Consensus 237 -tGn~~tE~lv-~~L~~~g~-~tgidl-~~l~~~~~~~~~vr~~y~~~~~~~~~~--~~~v~~hq~PGG~~snl~~Ql~~ 310 (596)
T PRK14042 237 -ASHPPTEALV-AALTDTPY-DTELDL-NILLEIDDYFKAVRKKYSQFESEAQNI--DPRVQLYQVPGGMISNLYNQLKE 310 (596)
T ss_pred -CCcHhHHHHH-HHHHhcCC-CCCCCH-HHHHHHHHHHHHHHHHHhhcCCccccC--CcceeecCCCcchhhHHHHHHHH
Confidence 3677654322 22322221 123443 445555566655443 2100 000000 1122456788853 67777877
Q ss_pred CCCCCCChHHHHHHh
Q psy2386 293 PNLLTIDNFQFFLNT 307 (311)
Q Consensus 293 ~~~~~~~~~~~l~~~ 307 (311)
..... ...++++|+
T Consensus 311 ~g~~d-~~~ev~~e~ 324 (596)
T PRK14042 311 QNALD-KMDAVHKEI 324 (596)
T ss_pred CCcHh-HHHHHHHHH
Confidence 77666 677777665
No 497
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=91.12 E-value=2.3 Score=36.26 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=57.2
Q ss_pred HHHHHHHHhcccc-c-eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHH
Q psy2386 102 VSDCIKAMRDSVE-I-DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVY 178 (311)
Q Consensus 102 ~~~iv~~v~~~~~-~-pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~ 178 (311)
+.+.++++++..+ . ++.|-++. .+-+..+.++|+|.|-+..-+. .+. +.+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-----------~ee~~ea~~~g~d~I~lD~~~~---------------~~~~~~v~ 119 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-----------LEEAEEALEAGADIIMLDNMSP---------------EDLKEAVE 119 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-----------HHHHHHHHHTT-SEEEEES-CH---------------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-----------HHHHHHHHHhCCCEEEecCcCH---------------HHHHHHHH
Confidence 4566666666542 2 35554432 2335566779999998754321 122 3344
Q ss_pred HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222 (311)
Q Consensus 179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~ 222 (311)
+++...+++.+.++|||+ ++.+.++.+. +|.+.+|...+.=|+
T Consensus 120 ~l~~~~~~v~ie~SGGI~-~~ni~~ya~~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 120 ELRELNPRVKIEASGGIT-LENIAEYAKTGVDVISVGSLTHSAPP 163 (169)
T ss_dssp HHHHHTTTSEEEEESSSS-TTTHHHHHHTT-SEEEECHHHHSBE-
T ss_pred HHhhcCCcEEEEEECCCC-HHHHHHHHhcCCCEEEcChhhcCCcc
Confidence 454455678999999996 5777777766 999999987665554
No 498
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.99 E-value=8.7 Score=35.52 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=78.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEec-------cCCCccccccCcc---cCcccCC--hHHHHHHHHHHhccccceeEEE
Q psy2386 53 GDNEPKKLAKSAKIIQKWGYDEINLN-------CGCPSNRVQNGFF---GAILMTK--PLLVSDCIKAMRDSVEIDITVK 120 (311)
Q Consensus 53 ~g~~~~~~~~aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~---G~~Ll~~--~~~~~~iv~~v~~~~~~pvsvK 120 (311)
+|.+.+.+.. +.+.|+.+|... -|-|.|...+... .+.-+.+ .+...+.+....+..+.|+.+-
T Consensus 21 ~~~~~~~~~~----~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~q 96 (300)
T TIGR01037 21 MGSGVESLRR----IDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIAS 96 (300)
T ss_pred CCCCHHHHHH----HHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEE
Confidence 4666565543 334589998883 2223333222111 0111222 3443444444444456788877
Q ss_pred EeccCCCCCcHHHHHHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe--cCCC
Q psy2386 121 HRIGIDDINSYDFVRDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN--GGIK 196 (311)
Q Consensus 121 iR~g~~~~~~~~~~~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n--GgI~ 196 (311)
+. |.+ .+++.+.++.+++++ +++|.+----....|+ |..-...+..-++.+.++++.+ ++||..= .++.
T Consensus 97 i~-g~~----~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~-g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~ 169 (300)
T TIGR01037 97 VY-GSS----VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG-GIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVT 169 (300)
T ss_pred ee-cCC----HHHHHHHHHHHHhccCccCEEEEECCCCCCCCC-ccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChh
Confidence 64 222 335788899999874 9999874211111121 1100111112356788888877 6888644 3443
Q ss_pred CHHHHHHHHhh--cCEEEEe
Q psy2386 197 TKKEIDLHLNY--IDGVMLG 214 (311)
Q Consensus 197 s~~da~~~l~~--adgVmig 214 (311)
+..++.+.++. +|++.+.
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEE
Confidence 44444444543 9999873
No 499
>PRK13753 dihydropteroate synthase; Provisional
Probab=90.96 E-value=1.7 Score=40.12 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEe
Q psy2386 56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHR 122 (311)
Q Consensus 56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR 122 (311)
+++...+-|+.+.+.|+|.|||..-.-.| |+... ...+++..+++++++. ++||||-..
T Consensus 23 ~~d~a~~~a~~m~~~GAdIIDIGgeSTrP-------ga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISIDT~ 84 (279)
T PRK13753 23 DPAGAVTAAIEMLRVGSDVVDVGPAASHP-------DARPVSPADEIRRIAPLLDALSDQ-MHRVSIDSF 84 (279)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCcCCHHHHHHHHHHHHHHHHhC-CCcEEEECC
Confidence 67777777777777899999997433212 22222 2345666888888765 678888643
No 500
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.95 E-value=1.2 Score=41.73 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh--
Q psy2386 131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-- 207 (311)
Q Consensus 131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-- 207 (311)
++.+.++++.+.+.|++.|.+-|-|+....++-. -..+.++.+++.+. ++|||+.=+=.+.+++.++.+.
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~e-------Er~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGECATLTWE-------EKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccchhCCHH-------HHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 4567888999999999999998887633333211 11234555555442 4898877666666777766642
Q ss_pred ---cCEEEEehhhhhCC
Q psy2386 208 ---IDGVMLGREAYKNP 221 (311)
Q Consensus 208 ---adgVmigRa~l~~P 221 (311)
+|+||+--..+..|
T Consensus 101 ~~Gad~vlv~~P~y~~~ 117 (309)
T cd00952 101 DLGADGTMLGRPMWLPL 117 (309)
T ss_pred HhCCCEEEECCCcCCCC
Confidence 99999999887666
Done!