Your job contains 1 sequence.
>psy2386
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL
AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK
HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL
KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI
PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDN
FQFFLNTLNIP
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2386
(311 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 732 2.0e-72 1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 732 2.0e-72 1
UNIPROTKB|P32695 - symbol:dusA "tRNA-dihydrouridine synth... 726 8.6e-72 1
UNIPROTKB|Q48A03 - symbol:CPS_0353 "tRNA-dihydrouridine s... 712 2.6e-70 1
TIGR_CMR|CPS_0353 - symbol:CPS_0353 "TIM-barrel protein, ... 712 2.6e-70 1
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy... 704 1.8e-69 1
UNIPROTKB|Q884G7 - symbol:dusA "tRNA-dihydrouridine synth... 694 2.1e-68 1
UNIPROTKB|Q8EAJ0 - symbol:dusA "tRNA-dihydrouridine synth... 685 1.9e-67 1
TIGR_CMR|SO_3912 - symbol:SO_3912 "TIM-barrel protein, yj... 685 1.9e-67 1
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s... 674 2.8e-66 1
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ... 674 2.8e-66 1
UNIPROTKB|Q0C5H0 - symbol:dusA "tRNA-dihydrouridine synth... 650 9.7e-64 1
TIGR_CMR|SPO_2374 - symbol:SPO_2374 "tRNA-dihydrouridine ... 633 6.2e-62 1
TAIR|locus:2087408 - symbol:AT3G63510 species:3702 "Arabi... 503 3.7e-48 1
TAIR|locus:2152758 - symbol:AT5G47970 species:3702 "Arabi... 501 6.0e-48 1
GENEDB_PFALCIPARUM|PFI0920c - symbol:PFI0920c "Dihydrouri... 467 2.4e-44 1
UNIPROTKB|Q8I2W5 - symbol:PFI0920c "Dihydrouridine syntha... 467 2.4e-44 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 238 4.4e-20 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 238 4.4e-20 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 224 3.6e-18 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 205 5.3e-15 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 202 1.3e-14 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 201 1.4e-14 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 198 5.3e-14 1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 193 1.4e-13 1
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 193 1.7e-13 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 192 3.2e-13 1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 192 3.2e-13 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 186 1.4e-12 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 185 1.9e-12 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 181 5.0e-12 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 178 1.4e-11 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 178 1.5e-11 1
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 175 1.9e-11 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 178 3.5e-11 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 173 6.1e-11 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 176 7.1e-11 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 171 2.0e-10 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 167 6.5e-10 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 164 7.6e-10 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 163 1.7e-09 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 155 2.0e-09 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 161 2.0e-09 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 160 2.3e-09 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 161 2.7e-09 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 157 5.0e-09 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 157 5.0e-09 1
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 151 7.1e-09 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 159 7.8e-09 1
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 157 9.5e-09 1
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 153 1.4e-08 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 153 1.4e-08 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 151 2.5e-08 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 151 2.5e-08 1
UNIPROTKB|Q81ZD5 - symbol:BAS0319 "tRNA-dihydrouridine sy... 150 3.5e-08 1
TIGR_CMR|BA_0334 - symbol:BA_0334 "conserved hypothetical... 150 3.5e-08 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 150 3.7e-08 1
UNIPROTKB|G4MUR1 - symbol:MGG_08825 "tRNA-dihydrouridine ... 150 1.1e-07 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 146 1.3e-07 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 143 2.0e-07 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 142 2.5e-07 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 139 6.2e-07 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 137 1.2e-06 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 137 1.2e-06 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 133 2.8e-06 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 133 3.1e-06 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 132 4.0e-06 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 132 4.0e-06 1
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 134 5.5e-06 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 133 6.3e-06 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 133 6.3e-06 1
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 130 6.5e-06 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 132 7.2e-06 1
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 128 7.4e-06 1
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 132 8.4e-06 1
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 132 8.6e-06 1
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 127 1.4e-05 1
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 127 1.4e-05 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 130 1.4e-05 1
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 126 1.7e-05 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 130 1.9e-05 1
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 128 2.4e-05 1
ASPGD|ASPL0000054271 - symbol:AN0956 species:162425 "Emer... 126 5.1e-05 1
CGD|CAL0005565 - symbol:orf19.1565 species:5476 "Candida ... 124 9.5e-05 1
UNIPROTKB|Q5ALL3 - symbol:DUS3 "tRNA-dihydrouridine(47) s... 124 9.5e-05 1
CGD|CAL0003882 - symbol:SMM1 species:5476 "Candida albica... 121 0.00012 1
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 118 0.00031 1
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 113 0.00061 1
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 116 0.00077 1
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 114 0.00091 1
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 141/293 (48%), Positives = 201/293 (68%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQGTHLGH--MTRHMLGLFQNMPGARQWRRHISE 301
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 141/293 (48%), Positives = 201/293 (68%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR FHR ++ + LYTEM TT AI+ + L +N EEHP+A Q G + PK L
Sbjct: 13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR V+I +TVK
Sbjct: 73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132
Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ F+ TV+ GC F +HAR A+L L+PK+NR+IP L Y Y
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
+K+DFP L I +NGG+K+ +E LHL ++DGVM+GREAY+NP+L++ D + +
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+ R +I+ M+ YI ++L +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQGTHLGH--MTRHMLGLFQNMPGARQWRRHISE 301
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 146/293 (49%), Positives = 199/293 (67%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRHCR F R ++R + LYTEM TT AI+ K L ++ EEHP+A Q+G ++P L
Sbjct: 19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDEINLN GCPS+RVQNG FGA LM LV+DC+KAMRD V I +TVK
Sbjct: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
RIGIDD +SY+F+ DF+ TVS G C FI+HAR A+L L+PK+NR+IP L Y VY
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK+DFP L + INGGIK+ +E HL ++DGVM+GREAY+NP +++ D + +
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
P + ++ M YI ++L ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTYLGH--ITRHMLGLFQGIPGARQWRRYLSE 307
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 136/292 (46%), Positives = 199/292 (68%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+H R F+R +T+++ LYTEM TT AIL K L +N EHP+ Q+G ++ K +
Sbjct: 26 LDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLGGSDVKAM 85
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
+ AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+ M+ + I +TVK
Sbjct: 86 TECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVK 145
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ F+ VS A CR FI+HAR A+L L+PKQNR +P L Y+ VY +
Sbjct: 146 SRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI 205
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K DF +LE+ INGGIKT E + HL +IDGVM+GRE Y +P+++++ D Y + K+
Sbjct: 206 KNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQS-DTIKL 264
Query: 241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++I+ M+ YI + + + RHMLGL + G+ KF+Q LS+
Sbjct: 265 -SRSEVIDLMVPYIDETIANGGRAWH--VLRHMLGLCNGLSGARKFRQHLSE 313
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 136/292 (46%), Positives = 199/292 (68%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TD+H R F+R +T+++ LYTEM TT AIL K L +N EHP+ Q+G ++ K +
Sbjct: 26 LDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLGGSDVKAM 85
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
+ AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+ M+ + I +TVK
Sbjct: 86 TECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVK 145
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGIDD++SY+F+ F+ VS A CR FI+HAR A+L L+PKQNR +P L Y+ VY +
Sbjct: 146 SRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI 205
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K DF +LE+ INGGIKT E + HL +IDGVM+GRE Y +P+++++ D Y + K+
Sbjct: 206 KNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQS-DTIKL 264
Query: 241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+R ++I+ M+ YI + + + RHMLGL + G+ KF+Q LS+
Sbjct: 265 -SRSEVIDLMVPYIDETIANGGRAWH--VLRHMLGLCNGLSGARKFRQHLSE 313
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 139/293 (47%), Positives = 202/293 (68%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR F R I+R++ LYTEM TT AIL G+++ L F+ EHP+A Q+G ++P+
Sbjct: 36 MDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRERLLGFHPAEHPLAIQLGGSDPEA 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA+ AKI + G+DE+NLN GCPS RVQ G FGA LM +P V+DC++AM ++V + +TV
Sbjct: 96 LAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRAMCEAVSVPVTV 155
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIGIDD +SY+ + FV V+ AGCRTFIVHAR A+L+ L+PK+NR+ P L+Y+ V
Sbjct: 156 KTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKENRQTPPLRYDVVRR 215
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK + PEL I++NGGI+T E + HL++ DGVM+GR AY NP+L++ D Y + +
Sbjct: 216 LKSELPELAIVLNGGIQTLDEAERHLSWCDGVMIGRAAYHNPYLLAEADRRCYGH-SDVR 274
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
TR ++I + Y+R +L ++TRH+LGL G ++++ +S+
Sbjct: 275 PRTREEVIEDFMPYVRNELSKGSRLH--ALTRHILGLYHATPGGKRWRRHISE 325
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 142/292 (48%), Positives = 192/292 (65%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TD HCR F R ++ + LYTEM TT A+L G+++ L + EHP+A Q+G +
Sbjct: 26 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAG 85
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ + GYDE+NLN GCPS+RVQN GA LM P LV+DC+KAMRD+V I +TV
Sbjct: 86 LAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 145
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
KHRIGI+ +SY + DFVGTV AGC++F VHAR A L+ L+PK+NR IP L+Y+ V
Sbjct: 146 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 205
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFPELEI++NGGIKT ++ HL DGVMLGREAY NP+L++ D + ++
Sbjct: 206 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSVAP-- 263
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILS 291
+ +R + M YI + +TRHMLGL G+ +F+Q+LS
Sbjct: 264 VISRHAALESMRPYIAAHIASGGNMHH--VTRHMLGLGLGFPGARRFRQLLS 313
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 135/292 (46%), Positives = 197/292 (67%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVEL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D + +
Sbjct: 202 KRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGSTKA--V 259
Query: 241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L ITRHM+GL + + G+ +++ LS+
Sbjct: 260 MSREAVIEAMLPYIEAHLQVGGRLNH--ITRHMIGLFQGLPGARAWRRYLSE 309
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 135/292 (46%), Positives = 197/292 (67%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
++ TDRH R F R ++ + LYTEM TT AIL + L +N EEHP+A Q+G + P +L
Sbjct: 22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVEL 81
Query: 61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
A+ AK+ + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+ V+I +TVK
Sbjct: 82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141
Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
RIGID+ +SY+F+ F+ TV + GC FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct: 142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201
Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
K+D+P L I INGGI + ++ HL ++DGVM+GREAY+NP++++ D + +
Sbjct: 202 KRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGSTKA--V 259
Query: 241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+R +I M+ YI L ITRHM+GL + + G+ +++ LS+
Sbjct: 260 MSREAVIEAMLPYIEAHLQVGGRLNH--ITRHMIGLFQGLPGARAWRRYLSE 309
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 145/297 (48%), Positives = 198/297 (66%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L K+ CLD++ EEHP+A QVG ++P+
Sbjct: 37 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 96
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 97 LALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 156
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 157 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 216
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LN--YYS-NL 235
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L+ +S +
Sbjct: 217 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 276
Query: 236 PQYK-IP-TRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQIL 290
K P T ++ R + Y+ +QL ++TRH+ GL + G+ K+++ L
Sbjct: 277 ADKKQTPLTPKRVLLRYLPYMAKQLANGVPLY--AMTRHLNGLFQGQPGAKKWRRFL 331
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 145/297 (48%), Positives = 198/297 (66%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQVGDNEPKK 59
M TDRH RMF RQI+R+ LYTEM TT A+L K+ CLD++ EEHP+A QVG ++P+
Sbjct: 37 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 96
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA A++ ++ G+DEINLN GCPS RV G FGA L+ + LV+DC+ AM V I ++V
Sbjct: 97 LALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 156
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G+DD +SY+ + FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y VY
Sbjct: 157 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 216
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LN--YYS-NL 235
LK+DFP LEIIINGGIKT + I+ HL +DGVM+GREAY NP + FD L+ +S +
Sbjct: 217 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 276
Query: 236 PQYK-IP-TRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQIL 290
K P T ++ R + Y+ +QL ++TRH+ GL + G+ K+++ L
Sbjct: 277 ADKKQTPLTPKRVLLRYLPYMAKQLANGVPLY--AMTRHLNGLFQGQPGAKKWRRFL 331
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 132/293 (45%), Positives = 190/293 (64%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR FHR +T+ + L+TEM T A++ G+++ + F+ EHP+ Q+G +EP K
Sbjct: 15 MDWTDRHCRAFHRTLTKRALLWTEMVTADAVIHGDRQRLIGFSDVEHPLVLQLGGSEPGK 74
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + +GYDE+NLNCGCPS RVQ+G FGA LM +P LV+DC+ AMR +V I +TV
Sbjct: 75 LAEAARIAEGYGYDEVNLNCGCPSERVQSGAFGACLMAEPDLVADCVAAMRAAVSIPVTV 134
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K+RI IDD+ + + + F+ VS AGC F VHAR A+LK L+PK+NR++P L Y V
Sbjct: 135 KNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPKENREVPPLDYGLVAE 194
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK P+L II+NGGI T + H+ DGVMLGR AY+ P L+ D + + +
Sbjct: 195 LKTARPDLTIILNGGIATIDQCRDHIGVFDGVMLGRAAYQTPGLLGQVDSDLFG---EGA 251
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+ D + YI +L ++TRHMLGL G+ ++++ILS+
Sbjct: 252 MIAAGDAVRAYEPYIAARLAEGSNLH--AMTRHMLGLFAGQPGARQWRRILSE 302
>TIGR_CMR|SPO_2374 [details] [associations]
symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
Length = 344
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 129/295 (43%), Positives = 191/295 (64%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
M+ TDRHCR HR ++R + LYTEM T A++ G H L+++ EEHP+A Q+G ++P++
Sbjct: 19 MDWTDRHCRYLHRLLSRQTLLYTEMVTAPALVRGGALHLLEYSVEEHPVALQLGGSDPEE 78
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A++ + GYDEINLNCGCPS+RVQ+G FGA+LM P LV+DC+ AMR++V++++TV
Sbjct: 79 LAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVADCVTAMREAVDVEVTV 138
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K RIG+DD + + +F+ ++ AGC+ I+HAR A+L+ L+PK+NR IP L Y+ V+
Sbjct: 139 KCRIGVDDQDPETVLPEFLEQIAGAGCQRVIIHARKAWLQGLSPKENRDIPPLDYDLVHR 198
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF-LMSNFDLNYYSNLPQ 237
+K FP + I INGGI T HL+ +DGVM+GR AY P ++ D Y
Sbjct: 199 MKARFPGMHISINGGIDTLAAARAHLDAGLDGVMIGRAAYHQPADILCKADPLIYGT-GT 257
Query: 238 YKIPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
P + + M+ YI L ITRHMLGL G+ ++++LS+
Sbjct: 258 ASDP--VTAVRAMLPYIEAHLATGGRLH--QITRHMLGLFAGRPGARGWRRMLSE 308
>TAIR|locus:2087408 [details] [associations]
symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
Genevestigator:Q8H128 Uniprot:Q8H128
Length = 419
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 108/260 (41%), Positives = 158/260 (60%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILG---NKKHCLDFNAEEHPIAFQVGDNEP 57
M+ TD H R R IT+++WLYTEM + ++ N L F+ ++HPI Q+G +
Sbjct: 60 MDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNV 119
Query: 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQ-NGFFGAILMTKPLLVSDCIKAMRDSVEID 116
+ LAK+AK+ +GYDEINLNCGCPS +V +G FG LM KP LV + + A+ + +
Sbjct: 120 ENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVP 179
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVK RIG+D+ +SYD + DF+ VS+ R FIVH+R A L ++P NR+IP LKY
Sbjct: 180 VTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYE 239
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF-LMSNFDLNYYS 233
+ Y L +DFP+L INGGI + +++ L GVM+GR AY NP+ + D Y
Sbjct: 240 YYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYG 299
Query: 234 NLPQYKIPTRIDIINRMILY 253
+P + TR ++ + +Y
Sbjct: 300 -VPSSGL-TRRQVLEQYQVY 317
>TAIR|locus:2152758 [details] [associations]
symbol:AT5G47970 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0009524 EMBL:AB017064
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000259834 KO:K05539 EMBL:AB024025
ProtClustDB:CLSN2686569 EMBL:AY072094 EMBL:AY096579 IPI:IPI00520234
RefSeq:NP_001078731.1 RefSeq:NP_199608.1 UniGene:At.66758
ProteinModelPortal:Q9FI41 SMR:Q9FI41 EnsemblPlants:AT5G47970.1
EnsemblPlants:AT5G47970.2 GeneID:834848 KEGG:ath:AT5G47970
TAIR:At5g47970 InParanoid:Q9FI41 OMA:KATRLAN PhylomeDB:Q9FI41
ArrayExpress:Q9FI41 Genevestigator:Q9FI41 Uniprot:Q9FI41
Length = 387
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 118/315 (37%), Positives = 171/315 (54%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL---GNKKHCLDFNAEEHPIAFQVGDNEP 57
M TD H R R IT+++WLYTEM + I+ N L F+ ++HPI Q+G
Sbjct: 18 MGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPIVLQIGGRNL 77
Query: 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-GFFGAILMTKPLLVSDCIKAMRDSVEID 116
+ LAK+ ++ + YDEIN NCGCPS +V G FGA+LM P V + + + +
Sbjct: 78 ENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMSVIAANTNAA 137
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVK RIG+DD +SY+ + DF+ VSS + FI+H+R A L L+P NR+IP LKY
Sbjct: 138 VTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSGLSPSDNRRIPPLKYE 197
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF-LMSNFDLNYYS 233
F + L +DFP+L+ INGGI + E D L GVMLGR Y NP+ ++ + D Y
Sbjct: 198 FFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYYNPWHILGHVDTVVYG 257
Query: 234 NLPQYKIPTRIDIINRMILYIRQQLXXXXXXX--XXSITRHMLGLMKNIKGSNKFKQILS 291
+ P I TR ++ + LY L I R ++ L + G+ ++K+ +
Sbjct: 258 S-PSSGI-TRRQVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKR-RT 314
Query: 292 KPNLLTIDNFQFFLN 306
LL Q FL+
Sbjct: 315 DAALLHCTTLQSFLD 329
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 106/245 (43%), Positives = 154/245 (62%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN----KKHCLDFNAEEHPIAFQVGDNE 56
+N+T+RH R R IT+ + L+TEM +L N ++H L F+ EHPI Q+G +
Sbjct: 206 INVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEH-LGFDNNEHPIVCQLGGCD 264
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-GFFGAILMTKPLLVSDCIKAMRDSVEI 115
++++A ++++ GYDEIN+N GCPS +V N G FGA LM P V + + ++ V+I
Sbjct: 265 MNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQI 324
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVK R G+D+ +S+DF++ F+ TVSS GC FIVHAR A+LK L+PKQNRKIP L+Y
Sbjct: 325 PVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHARKAWLKGLDPKQNRKIPPLEYY 384
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNL 235
VY+L K +P L+ +NGGI+T +E LN G M E Y N +N D + + +
Sbjct: 385 KVYDLCKLYPHLKFTLNGGIQTIQEAIALLN---GYM--PENYNNNNNNNN-DTSNFIQI 438
Query: 236 PQYKI 240
Y I
Sbjct: 439 DNYNI 443
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 106/245 (43%), Positives = 154/245 (62%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGN----KKHCLDFNAEEHPIAFQVGDNE 56
+N+T+RH R R IT+ + L+TEM +L N ++H L F+ EHPI Q+G +
Sbjct: 206 INVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEH-LGFDNNEHPIVCQLGGCD 264
Query: 57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-GFFGAILMTKPLLVSDCIKAMRDSVEI 115
++++A ++++ GYDEIN+N GCPS +V N G FGA LM P V + + ++ V+I
Sbjct: 265 MNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQI 324
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVK R G+D+ +S+DF++ F+ TVSS GC FIVHAR A+LK L+PKQNRKIP L+Y
Sbjct: 325 PVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHARKAWLKGLDPKQNRKIPPLEYY 384
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNL 235
VY+L K +P L+ +NGGI+T +E LN G M E Y N +N D + + +
Sbjct: 385 KVYDLCKLYPHLKFTLNGGIQTIQEAIALLN---GYM--PENYNNNNNNNN-DTSNFIQI 438
Query: 236 PQYKI 240
Y I
Sbjct: 439 DNYNI 443
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 75/278 (26%), Positives = 142/278 (51%)
Query: 23 TEMFTTQAIL-GNKK--HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79
TEM A+L GN K +D E P+A Q+ + P+K+A++A+I+++ G I++N
Sbjct: 41 TEMINDLALLHGNSKTRQMIDLQGEAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINM 100
Query: 80 GCPSNR-VQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFV 138
GCP+ + V+NG GA LM KP L + A++++V + ++VK R G DD N+ + + +F
Sbjct: 101 GCPAPKIVKNGE-GAALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDD-NTVNAI-EFA 157
Query: 139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198
+ +AG VH R + + K + +I + +K+ ++++ NG + +
Sbjct: 158 QRMEAAGADLITVHGRTRE-QFYSGKADWEI-------IRRVKQAV-KVKVAGNGDVDSP 208
Query: 199 KEID--LHLNYIDGVMLGREAYKNPFLMSN--FDLNYYSNLPQYKIPTRIDIINRMILYI 254
++ L L +D VM+GR NP+L+ F L LP+ + ++ R Y+
Sbjct: 209 QKAKEMLELTGVDFVMIGRAVMGNPWLIQQIVFYLERGEILPKPSPQEKAEVALRHFEYL 268
Query: 255 RQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+ + +H K + G+++ ++IL++
Sbjct: 269 LK--FKGEYIAVREMRKHGGWYFKGLPGASRLREILNR 304
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 75/278 (26%), Positives = 142/278 (51%)
Query: 23 TEMFTTQAIL-GNKK--HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79
TEM A+L GN K +D E P+A Q+ + P+K+A++A+I+++ G I++N
Sbjct: 41 TEMINDLALLHGNSKTRQMIDLQGEAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINM 100
Query: 80 GCPSNR-VQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFV 138
GCP+ + V+NG GA LM KP L + A++++V + ++VK R G DD N+ + + +F
Sbjct: 101 GCPAPKIVKNGE-GAALMLKPELAEKIVMAVKNAVSVPVSVKIRKGFDD-NTVNAI-EFA 157
Query: 139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK 198
+ +AG VH R + + K + +I + +K+ ++++ NG + +
Sbjct: 158 QRMEAAGADLITVHGRTRE-QFYSGKADWEI-------IRRVKQAV-KVKVAGNGDVDSP 208
Query: 199 KEID--LHLNYIDGVMLGREAYKNPFLMSN--FDLNYYSNLPQYKIPTRIDIINRMILYI 254
++ L L +D VM+GR NP+L+ F L LP+ + ++ R Y+
Sbjct: 209 QKAKEMLELTGVDFVMIGRAVMGNPWLIQQIVFYLERGEILPKPSPQEKAEVALRHFEYL 268
Query: 255 RQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
+ + +H K + G+++ ++IL++
Sbjct: 269 LK--FKGEYIAVREMRKHGGWYFKGLPGASRLREILNR 304
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 224 (83.9 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 67/227 (29%), Positives = 118/227 (51%)
Query: 21 LYTEMFTTQAILGNKKHCLD---FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77
++ E + + N++ +D ++ +E PI Q N+P+ +SAKI + GYD +++
Sbjct: 40 IFNEFVSADGLARNREALIDKLGYSTQEKPIVAQFFGNKPEYFYESAKIANELGYDGVDI 99
Query: 78 NCGCPSNRVQNG--FFGAILMTKPLLVSDCIKAMRDSVEID--ITVKHRIGIDDINSYDF 133
N GCPS +V + GA L+T P L + +K ++++ + ++VK RIG D I ++
Sbjct: 100 NMGCPSRKVLSPKQASGAALITNPSLAKEIVKITKEALNFEKPVSVKTRIGFDKIEIDEW 159
Query: 134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIIN 192
+ + S C T +H R L P + + +L + V L+ P ++ N
Sbjct: 160 IPLILE--SEPACLT--LHLRTKKELSLVPA-HWEHQVL--DRVVELRNQISPNTLLVGN 212
Query: 193 GGIKTKKE-IDLHLNY--IDGVMLGREAYKNPFLMS-NFDLNYYSNL 235
G ++T ++ ID ++N IDGVM+GR Y NP+L + N + Y L
Sbjct: 213 GDVETYEQGID-YINQFGIDGVMIGRAVYGNPWLFNKNLVIQYQPGL 258
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 205 (77.2 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 69/272 (25%), Positives = 126/272 (46%)
Query: 23 TEMFTTQAILGNKKHCL---DFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79
+EM ++A++ K + + E A Q+ EP +A++AKI + G I++N
Sbjct: 41 SEMIASRAMILKTKDTMKKVSLSPREDITAIQLAGFEPDVMAEAAKINEDMGAKIIDINF 100
Query: 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
GCP +V NG+ G+ LM + ++A +V+I +T+K R G D+ N + +
Sbjct: 101 GCPVKKVVNGYAGSYLMKDECHAAKILEATVKAVKIPVTLKMRTGWDE-NHRNAPK-LAK 158
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
G + +H R + K + + F+ +K ++ +I NG IKT +
Sbjct: 159 IAEDLGIKMITIHGRTR-AQMYKGKSD-------WQFIRTVKNTV-KIPVIANGDIKTYE 209
Query: 200 EIDLHL--NYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQ 257
+ + L + DG+M+GR AY P+ + N L++ + + PT + + ++ +I
Sbjct: 210 DAERALVESGADGIMIGRGAYGKPWSIRNM-LHFLRTGKKLQEPTPQEKLPIILQHISSI 268
Query: 258 LXXXXXXXXXSITR-HMLGLMKNIKGSNKFKQ 288
I R H+L N K S +F+Q
Sbjct: 269 FSHYGTEMGIGIARKHILWYSANYKNSAEFRQ 300
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 202 (76.2 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 71/253 (28%), Positives = 119/253 (47%)
Query: 6 RHCRMFHRQITRYSWLYTEMFTTQ-AILGNKKHCL--DFNAEEHPIAFQVGDNEPKKLAK 62
R CR F + +EM + A+ +K L D E PI+ Q+ +P+++A+
Sbjct: 27 RLCRQFGAGLA-----VSEMISASPALQATRKSRLRQDHRGEPGPISVQIVGADPREMAE 81
Query: 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122
+A+ G D I++N GCP+ +V N G+ L+ LV++ ++A+ +V + +T+K R
Sbjct: 82 AARRTVDLGADIIDINMGCPAKKVCNVAAGSALLRDEKLVANILEAVVQAVPVPVTLKIR 141
Query: 123 IGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK 181
G D S + V +G ++ SAG R VH R + Y+ + +K
Sbjct: 142 TGWDSA-SRNAVS--IGKIAESAGIRALTVHGRTRACGFAGAAE--------YSTITEVK 190
Query: 182 KDFPELEIIINGGIKT--KKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
K + +I NG I + K E L D VM+GR A+ P+L+ D +
Sbjct: 191 KAIG-IPVIANGDIDSPGKAEAVLRSTGADAVMIGRGAWGRPWLLREIDARLKDG--RQP 247
Query: 240 IPTRIDIINRMIL 252
+P +D I R +L
Sbjct: 248 LPPTLDEIRRTVL 260
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 201 (75.8 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 66/271 (24%), Positives = 128/271 (47%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHP-IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79
L +EM ++A++ + + +E P + Q+ P+ +A++AKI + G I+LN
Sbjct: 35 LISEMVASRAMILKTRQSMQ-KSEVCPNTSVQLAGCTPEIMAEAAKINEDLGAKSIDLNF 93
Query: 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
GCP+ +V +G+ G+ LM ++ + ++++ +V++ +TVK R+G D N
Sbjct: 94 GCPAKKVVDGYAGSALMKDEVIATKIMESVVKAVKVPVTVKMRMGWDTTNLN--APTLAK 151
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
G + +H R + + FV +K + ++ +I+NG I+T
Sbjct: 152 VAEDVGIQMITIHGRT--------RSQMFSGSADWKFVKRVK-ECVKIPVIVNGDIRTLD 202
Query: 200 EIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQ 257
+I + LN DGVM+GR AY P+L+ L++ N PT+ + + ++ +
Sbjct: 203 DIVVALNESGADGVMIGRGAYGKPWLIKQA-LSFMKNSEILPEPTKSEKLAIILDHYDYA 261
Query: 258 LXXXXXXXXXSITR-HMLGLMKNIKGSNKFK 287
L I R H+ + G++ F+
Sbjct: 262 LDYYGKDLGVKILRKHLSWYSSSYSGASYFR 292
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 198 (74.8 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 68/243 (27%), Positives = 112/243 (46%)
Query: 6 RHCRMFHRQITRY---SWLYTEMFTTQAILGNK-KHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R++ R+ +YT M + + N+ DF N + + QVG N
Sbjct: 35 RYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCVIVQVGVNNVDD 94
Query: 60 LAKSAKIIQKWGYDEINLNCGCP-SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
K ++I + D I +NCGCP +V+ G GA LM+ P LV++ IK +D I
Sbjct: 95 FMKFIEMIHPF-VDGIGINCGCPIKEQVREGI-GAALMSDPDLVAELIKTAKDKYGDSIC 152
Query: 119 VKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
+ +I I DIN DFV V AG T VH R N + + +P+ + +
Sbjct: 153 IDTKIRIHRDINQ---TIDFVNKVVEAGTDTLTVHGRTK-----NTRSS--VPV-NLDAI 201
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL 235
++++ + +I NG T + ++Y +DGVM R NP L + D +S +
Sbjct: 202 KIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTGLDKTPWSAV 261
Query: 236 PQY 238
+
Sbjct: 262 EMF 264
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 193 (73.0 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 54/192 (28%), Positives = 93/192 (48%)
Query: 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 101
N + P+ Q + + LA +A ++ + D ++LNCGCP + +GA L+ KP L
Sbjct: 67 NKNDRPLIVQFAAKDAQTLADAACVVSPFS-DGVDLNCGCPQRWAMSEGYGACLINKPEL 125
Query: 102 VSDCIKAMRDSVE---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158
V D ++ +R+ ++ +++K RI D + D + V +AG VH R A
Sbjct: 126 VKDMVRHVRNQIDNPNYAVSIKIRIHKDVRQTVDLCQK----VEAAGVSYITVHGRTAI- 180
Query: 159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL--HLNYIDGVMLGRE 216
R P+ Y+ + +K D + +I NG IK+ ++++ L +DGVM R
Sbjct: 181 -------ERHQPV-HYDTIKTIK-DSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARG 231
Query: 217 AYKNPFLMSNFD 228
NP + S F+
Sbjct: 232 LLSNPAMFSGFE 243
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 193 (73.0 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 55/207 (26%), Positives = 103/207 (49%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L +EM ++A++ K L + + A Q+ +P +A +AK+ + G I++N G
Sbjct: 37 LVSEMIASRAMIIQTKQSLQKSQIQINTAVQLAGCDPTIMADAAKLNEDMGAQIIDINFG 96
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP +V N + G+ LM + ++++ +V+I +T+K R G D+ N+ + +
Sbjct: 97 CPVKKVVNSYAGSALMKDETTAAKILESVVKAVKIPVTLKMRTGWDN-NNLNSPK-LAKI 154
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
G + +H R + K + K F+ N+KK ++ +I+NG IK +
Sbjct: 155 AEETGIKMITIHGRTR-TQMFTGKADWK-------FIRNIKKCV-KIPVIVNGDIKNLND 205
Query: 201 IDLHL--NYIDGVMLGREAYKNPFLMS 225
I L + DG+M+GR AY P+ ++
Sbjct: 206 IKTSLEESQADGIMIGRGAYGKPWFIN 232
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 192 (72.6 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 68/270 (25%), Positives = 129/270 (47%)
Query: 24 EMFTTQAILGNKKHCLDF---NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY-DEINLNC 79
EM + +AIL N K LD + E P++ Q+ E + L +AK + ++ D I++N
Sbjct: 48 EMVSDKAILLNNKRTLDMLYIDEREKPLSLQIFGGEKETLVDAAKYVDQYTTADIIDINM 107
Query: 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
GCP ++ GA + P + + + A+ D+VE +TVK RIG D+ + F +
Sbjct: 108 GCPVPKIVKCDAGAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDE--DHIFAIENAK 165
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
V AG + VH R ++ K + ++ + +K+ + +I NG + T +
Sbjct: 166 AVERAGGQVVAVHGRTR-VQMYEGKAD-------WDIIKQVKQAV-NIPVIGNGDVATPQ 216
Query: 200 EIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYSN---LPQYKIPTRIDIINRMILYI 254
+ L+ I DGVM+GR A +P+++ + Y +P+ + +ID+ +L++
Sbjct: 217 DAKRMLDEIGVDGVMIGRAALGDPWMIYR-TVKYLETGELMPEPTVREKIDVC---MLHL 272
Query: 255 RQQLXXXXXXXXX-SITRHMLGLMKNIKGS 283
+ + + +H +K I+G+
Sbjct: 273 DRLIDLKNESVAVREMRKHAAWYLKGIRGN 302
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 192 (72.6 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 68/270 (25%), Positives = 129/270 (47%)
Query: 24 EMFTTQAILGNKKHCLDF---NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY-DEINLNC 79
EM + +AIL N K LD + E P++ Q+ E + L +AK + ++ D I++N
Sbjct: 48 EMVSDKAILLNNKRTLDMLYIDEREKPLSLQIFGGEKETLVDAAKYVDQYTTADIIDINM 107
Query: 80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
GCP ++ GA + P + + + A+ D+VE +TVK RIG D+ + F +
Sbjct: 108 GCPVPKIVKCDAGAKWLLDPNKIYEMVAAVVDAVEKPVTVKMRIGWDE--DHIFAIENAK 165
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
V AG + VH R ++ K + ++ + +K+ + +I NG + T +
Sbjct: 166 AVERAGGQVVAVHGRTR-VQMYEGKAD-------WDIIKQVKQAV-NIPVIGNGDVATPQ 216
Query: 200 EIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYSN---LPQYKIPTRIDIINRMILYI 254
+ L+ I DGVM+GR A +P+++ + Y +P+ + +ID+ +L++
Sbjct: 217 DAKRMLDEIGVDGVMIGRAALGDPWMIYR-TVKYLETGELMPEPTVREKIDVC---MLHL 272
Query: 255 RQQLXXXXXXXXX-SITRHMLGLMKNIKGS 283
+ + + +H +K I+G+
Sbjct: 273 DRLIDLKNESVAVREMRKHAAWYLKGIRGN 302
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 186 (70.5 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 63/234 (26%), Positives = 110/234 (47%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R YS YT M + + K +F N + P+ Q N+ +
Sbjct: 36 RYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARL 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A+I+ + + I++NCGCP +GA L+ KP LV D +K +R+ VE
Sbjct: 96 LSDAARIVCPYA-NGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFS 154
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI DD+ D + G VH R A + R P+ Y+
Sbjct: 155 VSIKIRIH-DDLKR---TVDLCQKAEATGVSWITVHGRTA--------EERHQPV-HYDS 201
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 228
+ +K++ + +I NG I++ KE + + DGVM+ R NP + + ++
Sbjct: 202 IKIIKENM-SIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYE 254
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 185 (70.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 64/234 (27%), Positives = 106/234 (45%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R Y YT M + + K +F N + P+ Q N+ +
Sbjct: 36 RYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFAANDARL 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A+I+ + + I++NCGCP +GA L+ KP LV D +K +R+ VE
Sbjct: 96 LSDAARIVCPYA-NGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVENPRFS 154
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D R T G VH R ++ P I I+K N
Sbjct: 155 VSIKIRIHDDLTRTIDLCRKAEAT----GVSWITVHGRTVE-ERHQPVHYEAIKIIKENM 209
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 228
+ +I NG I++ KE + H+ DGVM+ R NP + + ++
Sbjct: 210 ---------SIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAGYN 254
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 181 (68.8 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 61/234 (26%), Positives = 107/234 (45%)
Query: 6 RHCRM-FHRQITRYSW--LYTEMFTTQAILGNKK-HCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ F + RY YT M + + K +F N ++P+ Q E +
Sbjct: 24 RYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQFAAKEAQV 83
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L +A ++ + D ++LNCGCP +GA L+ KP LV D ++ +R+ ++
Sbjct: 84 LCDAALLVCPFA-DGVDLNCGCPQRWAMAEGYGACLINKPELVRDMVRHVRNQIDNPRFS 142
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D + T G VH RN + R P+ Y+
Sbjct: 143 VSIKIRIHEDLKKTVDLCKKAEAT----GVSWITVHGRNI--------EERHQPV-HYDA 189
Query: 177 VYNLKKDFPELEIIINGGIKTKKEIDL--HLNYIDGVMLGREAYKNPFLMSNFD 228
+ +K+ + ++ NG IKT K+ + HL DGVM+ R NP + + ++
Sbjct: 190 IKVIKESI-HIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMFAGYE 242
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 178 (67.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 62/234 (26%), Positives = 108/234 (46%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R YS YT M + + K +F N + P+ Q N+ +
Sbjct: 36 RYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAANDARL 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A I+ + I++NCGCP +GA L+ KP LV D ++ +R+ VE
Sbjct: 96 LSDAALIVCPYA-SGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRVENPRFS 154
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D R V + G VH R + R P+ Y+
Sbjct: 155 VSIKIRIHDDLARTIDLCRK----VEATGVSWITVHGRTV--------EERHQPV-HYDA 201
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 228
+ +K++ + I+ NG I++ KE + + DGVM+ R NP + + ++
Sbjct: 202 IKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYE 254
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 178 (67.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 62/234 (26%), Positives = 108/234 (46%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R YS YT M + + K +F N + P+ Q N+ +
Sbjct: 36 RYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAANDARL 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A I+ + I++NCGCP +GA L+ KP LV D ++ +R+ VE
Sbjct: 96 LSDAALIVCPYA-SGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRVENPRFS 154
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D R V + G VH R + R P+ Y+
Sbjct: 155 VSIKIRIHDDLARTIDLCRK----VEATGVSWITVHGRTV--------EERHQPV-HYDA 201
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 228
+ +K++ + I+ NG I++ KE + + DGVM+ R NP + + ++
Sbjct: 202 IKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYE 254
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 175 (66.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 65/237 (27%), Positives = 111/237 (46%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGNKKHC----LDFNAEEHPIAFQVGDNEPK 58
R+ ++ RQ+ R Y +T M + + ++K C L + P+ Q ++P
Sbjct: 3 RYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEK-CRSSELSVCEGDSPLIVQFATDDPF 61
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EI 115
L+++A+++ K ++LNCGCP + V++ FG+ L++KP L++D ++ R + +
Sbjct: 62 VLSEAAEMVYKCSTG-VDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK-IPILKY 174
+++K RI D + D R +AG VH R P Q + I I
Sbjct: 121 SVSLKIRINHDIEKTVDLCRK----AEAAGVTHLTVHGRT-------PSQRAEPIDIQAL 169
Query: 175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHL---NYIDGVMLGREAYKNPFLMSNFD 228
V KD + II NGGI T++E L L +DG+M NP L + +
Sbjct: 170 RIV----KDSVSVPIIANGGITTREEA-LFLAEQTGVDGIMAANGLLDNPALFAGHE 221
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 178 (67.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 55/223 (24%), Positives = 102/223 (45%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNA---EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77
+YT MF ++ K + D+ + E+ P+ Q NEP+ + K+AK I+ D I+L
Sbjct: 79 VYTPMFHSKNFATCKTYRRDYWSTCPEDRPLVVQFCGNEPEWVVKAAKYIEDH-CDAIDL 137
Query: 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 137
N GCP + G +G+ L+ KP ++ ++ + +++ I K R+ + +++ D ++
Sbjct: 138 NLGCPQQIARRGNYGSFLLDKPHIILPIVQELHKHIKVPIFCKIRL-LPNLD--DTIK-L 193
Query: 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197
+ AGC+ +H R K N I + + +++ + +I NG +
Sbjct: 194 ALQLQEAGCQLLTIHGRTKEQKGHNSG------IANWKAIRTIREQL-SIPVIANGSVVQ 246
Query: 198 KKEID--LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQY 238
++ID L DGVM NP S + Y +Y
Sbjct: 247 YEDIDRCLEETGADGVMSAEGILANPSFFSGLKVPIYQVAREY 289
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 173 (66.0 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 61/234 (26%), Positives = 108/234 (46%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R YS YT M + + K +F N + P+ Q N+ +
Sbjct: 36 RYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFAANDARL 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A ++ + + I++NCGCP +GA L+ KP LV D ++ +R+ VE
Sbjct: 96 LSDAALLVCPYA-NGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVESPRFS 154
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D R T G VH R + R P+ Y+
Sbjct: 155 VSIKIRIHDDLARTIDLCRKAEAT----GVSWITVHGRTV--------EERHQPV-HYDA 201
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFD 228
+ +K++ + I+ NG I++ KE + + DGVM+ R NP + + ++
Sbjct: 202 IKMIKENV-SIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYE 254
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 176 (67.0 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 69/236 (29%), Positives = 103/236 (43%)
Query: 9 RMFHRQITRYSWLYTEMFTTQAILGNKKHC--LDFNAE-EHPIAFQVGDNEPKKLAKSAK 65
R + Q+ + ++F TQ N LD N + + P+ Q N+P L ++AK
Sbjct: 78 RRYGAQLCYTPMFHAKLFATQEKYRNSMWTTNLDGNKDLDRPLVVQFCANDPDYLLQAAK 137
Query: 66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125
+I+ D I+LN GCP + G +GA LM LV IK + D++ I +T K RI
Sbjct: 138 LIEN-ECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLIKNLHDNLSIPVTAKIRI-Y 195
Query: 126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK-KLNPKQNRKIPILKYNFVYNLKKDF 184
DD Y+ + V AG + VH R +K + N KI LKY L+ +
Sbjct: 196 DD---YEKSLKYAKMVLDAGAQFITVHGRTREMKGQATGLANWKI--LKY-----LRDNL 245
Query: 185 PELEIII-NGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
P+ ++ NG I +I + D VM NP + D N P+
Sbjct: 246 PQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNPGVFWTLDDNKDKQFPR 301
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 171 (65.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 61/240 (25%), Positives = 102/240 (42%)
Query: 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 103
EE P+ Q N+P+ + K+AKI + D +++N GCP + G +G+ L L+
Sbjct: 73 EERPLIIQFCGNDPEIMLKAAKIAAPY-CDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 163
I + + I +T K RI D + D+ + + AG VH R L
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAK----MILKAGASILAVHGR------LRE 181
Query: 164 KQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKN 220
++ I + + L+K+ P E + NG I ++ID + Y +DGV+ + N
Sbjct: 182 QKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYN 241
Query: 221 P--FLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMK 278
P FL + L + Y P D+ + IR+ +I H+ LM+
Sbjct: 242 PRIFLPPSSPL-----MTLY--PRIDDMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMR 294
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 167 (63.8 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 60/237 (25%), Positives = 109/237 (45%)
Query: 22 YTEMFTTQAILGNKKH------CLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI 75
YT M + +KK+ LD ++ + P+ Q N+P+ L +AK+++ D +
Sbjct: 57 YTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVED-KCDAV 115
Query: 76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR 135
+LN GCP + G +G+ LM + L+ + I + ++++ +T K RI D S ++ +
Sbjct: 116 DLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAK 175
Query: 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGG 194
V AG + VH R + ++ +K + + + L+ + P E NG
Sbjct: 176 ----MVLDAGAQFLTVHGR------VREQKGQKTGLANWETIKYLRDNLPKETVFFANGN 225
Query: 195 IKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR 249
I ++I + +I D VM NP + F++ N + KI R+D I R
Sbjct: 226 ILYPEDISRCMEHIGADAVMSAEGNLYNPGV---FNVGQTKN--KEKIFPRVDKIIR 277
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 164 (62.8 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 65/281 (23%), Positives = 128/281 (45%)
Query: 3 LTDRHCRMFHRQITRYSWLYTEMFTTQAILGNK---KHCLDFNAEEHPIAFQVGDNEPKK 59
+TDR R + + +EM +Q ++ K + + +A+ A Q+ +
Sbjct: 22 ITDRPFRDLVMEFGA-GMVVSEMVASQEMVQAKPGVRERAELSADVENTAVQLAGRDTHW 80
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A++A+ + G I++N GCP+ +V NG+ G+ L+ P I+A+ +V++ +T+
Sbjct: 81 IAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAVVAAVDVPVTL 140
Query: 120 KHRIGIDD--INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
K R+G DD +N+ D R + AG R +H R + + R + +
Sbjct: 141 KTRLGWDDTLMNAPDVAR----RAAEAGVRMVTIHGRT----RCQFYKGRA----DWAAI 188
Query: 178 YNLKKDFPELEIIINGGIK---TKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSN 234
+++ ++ +I NG I T ++ L + DGVM+GR A P+L++ Y
Sbjct: 189 AAVREAV-DVPLIANGDITCAHTARQA-LDRSGADGVMVGRGAQGRPWLLAQIAHALYGT 246
Query: 235 LPQYKIPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLG 275
P ++P ++ + + + + L + R LG
Sbjct: 247 -PAPEVPQGAELADMVARHYQAMLDFYGRELGLRVARKHLG 286
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 163 (62.4 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 57/236 (24%), Positives = 113/236 (47%)
Query: 6 RHCRMFHRQITRYSWL---YTEMFTTQAILGNKK-HCLDFN--AEEHPIAFQVGDNEPKK 59
R+ ++ R++ R + + +T M + +I ++K +F+ A++ P+ Q +P +
Sbjct: 32 RYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAKDPTE 91
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDI 117
SA++I + D I+LNCGCP + +G ++ +P LV ++ +R ++ + +
Sbjct: 92 FVTSAQLIYPY-VDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLPGDFSV 150
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
+VK R+ + S D + SAG +H R K + K IP +
Sbjct: 151 SVKMRL-LGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQK--HSKDTLDIPAMS---- 203
Query: 178 YNLKKDFPELEIIINGGIKTKKEI-DLHLNY-IDGVMLGREAYKNPFLMSNFDLNY 231
+++ ++ +I+NG +++ ++ D+H GVM R NP L F+ NY
Sbjct: 204 -QVRQSL-QIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPAL---FNSNY 254
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 155 (59.6 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 56/206 (27%), Positives = 94/206 (45%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGN-KKHCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R YS YT M + + K +F N + P+ Q N+ +
Sbjct: 38 RYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAANDARL 97
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A+I+ + + I++NCGCP +GA L+ KP LV D +K +R+ VE
Sbjct: 98 LSDAARIVCPYA-NGIDINCGCPQRWALAEGYGACLINKPELVKDMVKQVRNQVENPRFS 156
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D R T G VH R + R P+ Y
Sbjct: 157 VSIKIRIHSDLTRTVDLCRKAEAT----GVSWITVHGRTV--------EERHQPV-HYEA 203
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID 202
+ +K+ + +I NG I++ KE +
Sbjct: 204 IKIIKESM-SIPVIANGDIRSLKEAE 228
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 161 (61.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 51/193 (26%), Positives = 87/193 (45%)
Query: 40 DF--NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT 97
DF N + P+ Q G N ++L +A+ ++ + I++NCGCP V FGA L+
Sbjct: 102 DFTINKLDEPLIVQFGVNNAEELVSAAEKVKDY-CQGIDINCGCPQRWVMKEGFGANLLL 160
Query: 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157
P + D +K + + V I I++K R+ D ++ + + G VH R +
Sbjct: 161 HPERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAK----RAERIGVSWITVHGRTSA 216
Query: 158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGR 215
+K +P + Y+ + L KD L + NG + T + + ++GVM R
Sbjct: 217 MKSSHP--------VDYDAI-KLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSAR 267
Query: 216 EAYKNPFLMSNFD 228
NP L +D
Sbjct: 268 GLLTNPALFQGYD 280
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 160 (61.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 59/234 (25%), Positives = 113/234 (48%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGNKKHCLDF--NAEEHPIAFQVGDNEPKKL 60
R+ ++ RQ+ R Y+ +YT M + L K DF N + + Q G ++P L
Sbjct: 29 RYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFDFSTNDADASLILQFGVDDPVIL 88
Query: 61 AKSAKIIQKWGYDEINLNCGCPSN-RVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT 118
K+A+++ + D I +NCGCP +Q G G+ L+ +P V ++A++ ++ E T
Sbjct: 89 EKAAQLVGPY-VDGIGINCGCPQTWAIQEGI-GSALLDEPEKVHKLVRAVKSTLGESFCT 146
Query: 119 -VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VK RI D+N R + + +G VH R +Q+R + + +
Sbjct: 147 EVKIRIA-KDLNK---TRHLMQVIEKSGADIITVHGRT--------RQDRSSFPVNLDAI 194
Query: 178 YNLKKDFPELEIIINGGIKT-KKEIDLHLNYID--GVMLGREAYKNPFLMSNFD 228
++ ++ ++ NG +K+ +K +++ Y + G+M R +NP L + ++
Sbjct: 195 REVRPCV-QIPVVANGDVKSLRKGLEI-AKYTETQGIMSARGLLENPALFAGYE 246
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 161 (61.7 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 71/257 (27%), Positives = 112/257 (43%)
Query: 8 CRMFHR-QITRYSWLYT-EMFTTQAILGNKK---HCLDFNAEEHPIAFQVGDNEPKKLAK 62
CR + ++ S LY EM T +A++ H F+A+E P + Q+ +P
Sbjct: 41 CRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESPRSLQLYTVDPDTTYA 100
Query: 63 SAKIIQKWGY-DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA-MR--DSVEIDIT 118
+A++I G D I++N GCP +V GA L K L + A +R + +I +T
Sbjct: 101 AARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVT 160
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
VK RIGIDD + D G ++ A G +HAR A R + +
Sbjct: 161 VKFRIGIDDAHHTHL--D-AGRIAEAEGAAAVALHARTA--------AQRYSGTADWEQI 209
Query: 178 YNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYSNL 235
LK+ + ++ NG I + ++ DGV++GR P+L + + +
Sbjct: 210 ARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGS- 268
Query: 236 PQYKIPTR---IDIINR 249
P PT DII R
Sbjct: 269 PAPTPPTLGEVADIIRR 285
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 157 (60.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 46/193 (23%), Positives = 95/193 (49%)
Query: 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 101
+ EE + Q+ +P+ +A++A+ + G I++N GCP+ +V G+ LM P L
Sbjct: 61 SGEEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPL 120
Query: 102 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 161
V D ++A+ +V++ +T+K R G + + G + VH R ++
Sbjct: 121 VKDILQAVVAAVDVPVTLKIRTGWEPEHRNGV--QIAQIAEDCGIASLAVHGRT---RQC 175
Query: 162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYK 219
K N + Y+ + +K++ + ++ NG I + ++ L+Y +D +M+GR A
Sbjct: 176 MYKGNAE-----YDTIKAIKQNV-SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQG 229
Query: 220 NPFLMSNFDLNYY 232
P++ ++ +Y
Sbjct: 230 RPWIFR--EIQHY 240
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 157 (60.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 46/193 (23%), Positives = 95/193 (49%)
Query: 42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLL 101
+ EE + Q+ +P+ +A++A+ + G I++N GCP+ +V G+ LM P L
Sbjct: 61 SGEEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPL 120
Query: 102 VSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 161
V D ++A+ +V++ +T+K R G + + G + VH R ++
Sbjct: 121 VKDILQAVVAAVDVPVTLKIRTGWEPEHRNGV--QIAQIAEDCGIASLAVHGRT---RQC 175
Query: 162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYK 219
K N + Y+ + +K++ + ++ NG I + ++ L+Y +D +M+GR A
Sbjct: 176 MYKGNAE-----YDTIKAIKQNV-SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQG 229
Query: 220 NPFLMSNFDLNYY 232
P++ ++ +Y
Sbjct: 230 RPWIFR--EIQHY 240
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 151 (58.2 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 58/216 (26%), Positives = 96/216 (44%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGNKK-HCLDF--NAEEHPIAFQVGDNEPKK 59
R+ ++ R + R Y YT M + + K +F N + P+ Q N+ +
Sbjct: 36 RYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFAANDARL 95
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---ID 116
L+ +A+I+ + + I++NCGCP +GA L+ KP LV D +K +R+ VE
Sbjct: 96 LSDAARIVCPYA-NGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRNQVENPRFS 154
Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF 176
+++K RI D + D R T G VH R + R P+ Y
Sbjct: 155 VSIKIRIHDDLTRTVDLCRKAEAT----GVSWITVHGRTV--------EERHQPV-HYEA 201
Query: 177 VYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDG 210
+ +K+ + I+ NG I++ KE + H DG
Sbjct: 202 IKIIKESM-SIPIVANGDIRSLKEAENVWHTTGTDG 236
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 159 (61.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 50/217 (23%), Positives = 100/217 (46%)
Query: 8 CRMFHRQITRYSWLY-TEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKI 66
CR + ++ YS +Y +F T +K L E+ P+ Q N+ +++ +A +
Sbjct: 47 CRRYGAELC-YSPMYHANLFATDPKY--RKDALQTCPEDRPLIIQFCGNDAQQILDAALL 103
Query: 67 IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID 126
Q D +++N GCP + G +G+ L + L+++ + + + + +T K RI +
Sbjct: 104 AQDH-CDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLAVPVTCKIRI-FE 161
Query: 127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE 186
D+ +R + + +AGC+ VH R K P + +N++ N+++ +
Sbjct: 162 DLEKT--IR-YAKMLEAAGCQLLTVHGRTREQK--GPLTG----VANWNYIKNVRQHI-K 211
Query: 187 LEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNP 221
+ ++ NG I ++ L +DGVM NP
Sbjct: 212 IPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNP 248
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 157 (60.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 48/222 (21%), Positives = 100/222 (45%)
Query: 8 CRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKII 67
C+ + Q L++ +FT N++ E+ P+ Q N+P L ++AK +
Sbjct: 107 CQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTC--KEDRPLFVQFCANDPDTLLEAAKRV 164
Query: 68 QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127
+ + D +++N GCP + G +GA LM LV ++ + ++ + ++ K RI
Sbjct: 165 EPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFP-- 221
Query: 128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL 187
N D ++ + + AGC VH R + K +K ++ + +K +
Sbjct: 222 -NLEDTLK-YAKMLEDAGCSLLAVHGRTR-----DEKDGKKFRA-DWSAIKEVKNAM-RI 272
Query: 188 EIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNF 227
++ NG ++ +++D + ++GV+ +NP + F
Sbjct: 273 PVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGF 314
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/181 (26%), Positives = 87/181 (48%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ EP +A++A + G ++ N GCP+ V GA+L+ P + D +
Sbjct: 64 PVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIV 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
+AMR +V E +T K R+G +D + F+ + + V AG +HAR+ K
Sbjct: 124 RAMRQAVPAEHPVTAKIRLGYEDKSL--FMENALA-VYEAGATELAIHARS--------K 172
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPF 222
+ P + ++ +++ P + +I NG I + + + + D +M+GR A P
Sbjct: 173 VDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPN 231
Query: 223 L 223
L
Sbjct: 232 L 232
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/181 (26%), Positives = 87/181 (48%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ EP +A++A + G ++ N GCP+ V GA+L+ P + D +
Sbjct: 64 PVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIV 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
+AMR +V E +T K R+G +D + F+ + + V AG +HAR+ K
Sbjct: 124 RAMRQAVPAEHPVTAKIRLGYEDKSL--FMENALA-VYEAGATELAIHARS--------K 172
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPF 222
+ P + ++ +++ P + +I NG I + + + + D +M+GR A P
Sbjct: 173 VDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPN 231
Query: 223 L 223
L
Sbjct: 232 L 232
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 151 (58.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 48/202 (23%), Positives = 93/202 (46%)
Query: 51 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 110
Q+ ++P+ +A++A+ + G I++N GCP+ +V G+ L+ P ++ D +KA+
Sbjct: 70 QIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVV 129
Query: 111 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKI 169
++V + +T+K R G D N G + +H R A + K +
Sbjct: 130 NAVNVPVTLKTRTGWDTDNKNCL--SIAQLAEDCGIQALALHGRTRACMYKGEAE----- 182
Query: 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNF 227
Y+ + +K + +I NG I + ++ L Y D +M+GR A P++
Sbjct: 183 ----YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEI 237
Query: 228 D--LNYYSNLPQYKIPTRIDII 247
L + + +P+ I DI+
Sbjct: 238 QHFLEHGTTMPELPISEVKDIM 259
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 151 (58.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 48/202 (23%), Positives = 93/202 (46%)
Query: 51 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 110
Q+ ++P+ +A++A+ + G I++N GCP+ +V G+ L+ P ++ D +KA+
Sbjct: 70 QIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVV 129
Query: 111 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKI 169
++V + +T+K R G D N G + +H R A + K +
Sbjct: 130 NAVNVPVTLKTRTGWDTDNKNCL--SIAQLAEDCGIQALALHGRTRACMYKGEAE----- 182
Query: 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNF 227
Y+ + +K + +I NG I + ++ L Y D +M+GR A P++
Sbjct: 183 ----YDSIKAVKAAV-SIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIFQEI 237
Query: 228 D--LNYYSNLPQYKIPTRIDII 247
L + + +P+ I DI+
Sbjct: 238 QHFLEHGTTMPELPISEVKDIM 259
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 150 (57.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 50/188 (26%), Positives = 91/188 (48%)
Query: 39 LDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT 97
L F +E P+ + GDN P+ + + + + G+ I++N GCP V + G+ L+
Sbjct: 63 LIFTEDEQPMVAHIWGDN-PEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGKGSGLIL 121
Query: 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157
+P + ++ I+A + + ++VK R+G +++ ++ D++ + +H R
Sbjct: 122 RPDVAAELIQAAKAG-GLPVSVKTRLGFKELSEWE---DWLTHIFKQDIANLSIHLRTRE 177
Query: 158 LKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLG 214
IP +K L+ P + ING I +K ++L Y IDGVM+G
Sbjct: 178 EMSQVDAHWELIPEIK-----KLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIG 232
Query: 215 REAYKNPF 222
R +KNPF
Sbjct: 233 RGIFKNPF 240
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 150 (57.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 50/188 (26%), Positives = 91/188 (48%)
Query: 39 LDFNAEEHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT 97
L F +E P+ + GDN P+ + + + + G+ I++N GCP V + G+ L+
Sbjct: 63 LIFTEDEQPMVAHIWGDN-PEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGKGSGLIL 121
Query: 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157
+P + ++ I+A + + ++VK R+G +++ ++ D++ + +H R
Sbjct: 122 RPDVAAELIQAAKAG-GLPVSVKTRLGFKELSEWE---DWLTHIFKQDIANLSIHLRTRE 177
Query: 158 LKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKE-IDLHLNY-IDGVMLG 214
IP +K L+ P + ING I +K ++L Y IDGVM+G
Sbjct: 178 EMSQVDAHWELIPEIK-----KLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIG 232
Query: 215 REAYKNPF 222
R +KNPF
Sbjct: 233 RGIFKNPF 240
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 150 (57.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 64/298 (21%), Positives = 132/298 (44%)
Query: 3 LTDRHCRMFHRQITRYSWLYTEMFTTQAILGN--KKHCLDFNA-EEHPIAFQVGDNEPKK 59
+TD+ R RQ+ + +EM T+ L N K +A + P + Q+ + +
Sbjct: 23 VTDQPFRQLCRQLGA-GLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPRSVQIAGGDAQM 81
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
+A +A+ + G I++N GCP+ +V N G+ L+ LV+D ++A+ +V++ +T+
Sbjct: 82 MADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVNDILQAVVAAVDVPVTL 141
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R G D N AG + VH R + + +Y+ +
Sbjct: 142 KIRTGWDRDNRNGLT--VAKIAEQAGIQALAVHGRT--------RADLYTGEAEYDTIAM 191
Query: 180 LKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
+K+ + + NG I + ++ L DG+++GR A P++ ++ +Y L
Sbjct: 192 IKQAV-SIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFR--EIEHYL-LTG 247
Query: 238 YKIPT-RIDIINRMIL-YIRQQLXXXXXXXXXSITRHMLG-LMKNIKGSNKFKQILSK 292
+P + + R++L ++ I R +G + + G+ +F+ + ++
Sbjct: 248 KTLPALQSSEVERILLEHLAALHVFYGDVMGVRIARKHVGWYLATLPGAREFRALFNR 305
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 48/191 (25%), Positives = 85/191 (44%)
Query: 39 LDFN-AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT 97
LD N A + P+ Q N+P L ++AK + + D ++LN GCP + G +GA L
Sbjct: 110 LDGNPAIDRPLFVQFCANDPSALLEAAKHVAPY-CDAVDLNLGCPQGIARKGHYGAFLQE 168
Query: 98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF 157
L+ I+ + D + I +T K RI +++ + + V AG VH R
Sbjct: 169 DQELIHKLIRQLHDGLSIPVTAKIRI----LDTPEATLAYARNVLDAGASILTVHGRR-- 222
Query: 158 LKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEID--LHLNYIDGVMLG 214
++ + ++ + +L+++ P E I NG I + +++ L D VM
Sbjct: 223 ----REQKGHLTGVADWSAIRHLRENLPPETVIFANGNILQRGDLERCLEATGADAVMSA 278
Query: 215 REAYKNPFLMS 225
+P L +
Sbjct: 279 EGNLSDPTLFA 289
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 146 (56.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 57/233 (24%), Positives = 104/233 (44%)
Query: 6 RHCRMFHRQITR-YSW--LYTEMFTTQAILGNKKHC----LDFNAEEHPIAFQVGDNEPK 58
R+ ++ RQ+ R Y+ +Y+ M + + N+ H L N E+ P+ QVG N
Sbjct: 48 RYSKLPFRQLCREYNVDIVYSPMILAREYVRNE-HARISDLSTNNEDTPLIVQVGVNNVA 106
Query: 59 KLAKSAKIIQKWGYDEINLNCGCP-SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI 117
L K +++ + D I +NCGCP +++ G A++ LL S + A++D +
Sbjct: 107 DLLKFVEMVAPY-CDGIGINCGCPIKEQIREGIGCALIYNSDLLCS-MVHAVKDKYGDKL 164
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
++ +I I + + D + + AG +H R ++ Q + +KY +
Sbjct: 165 RIETKIRIHE--ALDETVELCRKLCDAGVDWITIHGRT---RRTRSSQPANLDAIKY-II 218
Query: 178 YNLK-KDFPELEIIINGGIKTKKEIDLHLNYID--GVMLGREAYKNPFLMSNF 227
N+ K+ P +I NG +++ Y GVM R NP L + +
Sbjct: 219 ENISDKNVP---VIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGY 268
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 50/174 (28%), Positives = 82/174 (47%)
Query: 57 PKKLAKSA-KIIQ--KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV 113
P+ LA++A + ++ WG D LNCGCPS V GA L+ P L+ KAMR++V
Sbjct: 74 PQWLAENAARAVELGSWGVD---LNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV 130
Query: 114 --EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 171
+ ++VK R+G D F + V AG +VH R +Q +
Sbjct: 131 PAHLPVSVKVRLGWDS-GEKKF--EIADAVQQAGATELVVHGRTK-------EQGYRAEH 180
Query: 172 LKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 223
+ + + ++++ + +I NG I + + ++ D VM+GR A P L
Sbjct: 181 IDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 142 (55.0 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 47/207 (22%), Positives = 98/207 (47%)
Query: 23 TEMFTTQAIL--GNKK-HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY-DEINLN 78
+EM ++ A++ +K H L+ E+P Q+ + + L K+ +++ + + D I+ N
Sbjct: 36 SEMISSNALVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFN 95
Query: 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT-VKHRIGIDDINSYDFVRDF 137
CGCP N+V G+ L+ L + + ++++ + +T VK R+G ++ +
Sbjct: 96 CGCPVNKVVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNE----KYPEKM 151
Query: 138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197
S G +H R K+L + Y + + K ++ +I NG I
Sbjct: 152 AKICESLGVDFISIHGRTR--KQLYSGK------ADYGSIASAKASV-KIPVIANGDINA 202
Query: 198 KKEIDLH-LNYIDGVMLGREAYKNPFL 223
+ +++ + DG+M+GR + NP++
Sbjct: 203 QNAKEVYKITKCDGLMIGRASVGNPWI 229
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 139 (54.0 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 46/210 (21%), Positives = 99/210 (47%)
Query: 51 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 110
Q+ ++PK++A +A+I + G I++N GCP+ +V G+ L+ P +V + +
Sbjct: 70 QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVV 129
Query: 111 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKI 169
++V++ +T+K R G + + G + +H R A L N +
Sbjct: 130 NAVDVPVTLKIRTGWAP--EHRNCEEIAQLAEDCGIQALTIHGRTRACL--FNGEA---- 181
Query: 170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNF 227
+Y+ + +K+ + +I NG I + L+Y D +M+GR A P++
Sbjct: 182 ---EYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR-- 235
Query: 228 DLNYYSNLPQYKIPTRIDIINRMIL-YIRQ 256
++ +Y + + P + + R++ ++R+
Sbjct: 236 EIQHYLDTGELLPPLPLAEVKRLLCAHVRE 265
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 48/188 (25%), Positives = 90/188 (47%)
Query: 51 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 110
Q+ + P +LA +AK+ G I++N GCP+ +V G+ L+ +P V ++++
Sbjct: 70 QIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVV 129
Query: 111 DSVEIDITVKHRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQN 166
++V+I +T+K R G D N + + ++G + VH R N F K N
Sbjct: 130 NAVDIPVTLKIRTGWCEDTRNGIEIAK----IAENSGIASLAVHGRTRNDFYKG-----N 180
Query: 167 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLM 224
+ +K L P ++ NG I + ++ L++ D +M+GR A P++
Sbjct: 181 AEYDTIK---AIKLAISIP---VVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
Query: 225 SNFDLNYY 232
++NY+
Sbjct: 235 R--EINYF 240
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 48/188 (25%), Positives = 90/188 (47%)
Query: 51 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR 110
Q+ + P +LA +AK+ G I++N GCP+ +V G+ L+ +P V ++++
Sbjct: 70 QIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVV 129
Query: 111 DSVEIDITVKHRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQN 166
++V+I +T+K R G D N + + ++G + VH R N F K N
Sbjct: 130 NAVDIPVTLKIRTGWCEDTRNGIEIAK----IAENSGIASLAVHGRTRNDFYKG-----N 180
Query: 167 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLM 224
+ +K L P ++ NG I + ++ L++ D +M+GR A P++
Sbjct: 181 AEYDTIK---AIKLAISIP---VVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
Query: 225 SNFDLNYY 232
++NY+
Sbjct: 235 R--EINYF 240
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 48/205 (23%), Positives = 88/205 (42%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + + E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I+ VR +
Sbjct: 108 CPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRV-FPEIDKT--VR-YAQM 163
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R K P + + ++K + + NG I+ ++
Sbjct: 164 LEKAGCQLLTVHGRTKEQK--GPLSGAA----SWEHIKAVRKAVA-IPVFANGNIQCLQD 216
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
++ L + GVM NP L
Sbjct: 217 VERCLRDTGVQGVMSAEGNLHNPAL 241
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 49/209 (23%), Positives = 89/209 (42%)
Query: 22 YTEMFTTQAILGNKKHCLDFNAE---EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN 78
+TEM + ++ K + + P+ Q+ ++P + + A + +G D I++N
Sbjct: 42 FTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQLFGDDPDVMGRVAATVDGYG-DLIDIN 100
Query: 79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG--IDDINSYDFVRD 136
GCP +V G+ LM +P V ++A+R + + +TVK R G +D N R
Sbjct: 101 MGCPVKKVVGTGAGSALMREPDKVRAIVRAVRRATRLPLTVKIRSGWSCEDANFIQIAR- 159
Query: 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196
GC +H R+ K+ LK + +I +G +
Sbjct: 160 ---IAEEEGCNAVTLHPRSRAQMFEGTADWTKLAELKQAVA---------IPVIGSGDLF 207
Query: 197 TKKEIDLHLNYI--DGVMLGREAYKNPFL 223
+ ++ L+ DGVM+ R A NP++
Sbjct: 208 SAADVAAMLDRTGCDGVMIARGALGNPWI 236
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 132 (51.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 52/207 (25%), Positives = 97/207 (46%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ +P +A++A + G I+LN GCP+ V GA L+ P L+ +
Sbjct: 64 PVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVV 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
KA RD+V I ++ K R+G +D F + V V+ A VHAR K
Sbjct: 124 KACRDAVPAHIPVSAKIRLGWEDPEDC-F--EIVDAVAQAKADELTVHART----KAG-- 174
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLNYIDGVMLGREAYKNPF 222
K +K++++ +++ + +I NG + + + +D +M+ R A P
Sbjct: 175 -GYKASEIKWHYIDQIRQKC-SIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPN 232
Query: 223 LMSNFDLNYYSNLPQYKIPTRIDIINR 249
L N + ++ +P +++ +D++ R
Sbjct: 233 L-GNVVKHNHAAMPWHEV---VDLLLR 255
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 132 (51.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 52/207 (25%), Positives = 97/207 (46%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ +P +A++A + G I+LN GCP+ V GA L+ P L+ +
Sbjct: 64 PVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVV 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
KA RD+V I ++ K R+G +D F + V V+ A VHAR K
Sbjct: 124 KACRDAVPAHIPVSAKIRLGWEDPEDC-F--EIVDAVAQAKADELTVHART----KAG-- 174
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLNYIDGVMLGREAYKNPF 222
K +K++++ +++ + +I NG + + + +D +M+ R A P
Sbjct: 175 -GYKASEIKWHYIDQIRQKC-SIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPN 232
Query: 223 LMSNFDLNYYSNLPQYKIPTRIDIINR 249
L N + ++ +P +++ +D++ R
Sbjct: 233 L-GNVVKHNHAAMPWHEV---VDLLLR 255
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 134 (52.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 46/205 (22%), Positives = 87/205 (42%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + + N E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 81 LHAQVFVRDANYRRENLYSEVNQEDRPLITQFCANDPEVFIQAALLAQDY-CDAIDLNLG 139
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +G L + L+ IK + + + IT K R+ +I V+ +
Sbjct: 140 CPQMIAKRGHYGVFLQDEWDLLEKMIKLANEKLSVPITCKIRV-FPEIEKT--VK-YAKM 195
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R ++ I + + +++ + + NG I+ +
Sbjct: 196 LEKAGCQLLTVHGRT------KDQKGALTGIASWKHIKAVREAV-NIPVFANGNIQHLSD 248
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
+ + + GVM NP L
Sbjct: 249 VHHCMEETGVQGVMSAEGNLHNPAL 273
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 133 (51.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 48/205 (23%), Positives = 88/205 (42%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + + E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I+ VR +
Sbjct: 108 CPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRV-FPEIDKT--VR-YAQM 163
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R K P + + ++K + + NG I+ ++
Sbjct: 164 LEKAGCQLLTVHGRTKEQK--GPLSGAA----SWEHIKAVRKAVA-IPVFANGNIQCLQD 216
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
++ L + GVM NP L
Sbjct: 217 VERCLRDTGVQGVMSAEGNLHNPAL 241
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 133 (51.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 48/205 (23%), Positives = 88/205 (42%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + D E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I+ VR +
Sbjct: 108 CPQMIAKRGHYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRV-FPEIDKT--VR-YAQM 163
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R K P + + ++K + + NG I+ ++
Sbjct: 164 LEKAGCQLLTVHGRTKEQK--GPMAGTA----SWEHIKAVRKAVG-IPVFANGNIQCLQD 216
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
++ + + GVM NP L
Sbjct: 217 VERCIQDTGVQGVMSAEGNLHNPAL 241
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 130 (50.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ ++P LA++A + G ++LN GCP+ V GAIL+ +P L+ +
Sbjct: 64 PLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIV 123
Query: 107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 154
+R +V +I +T K R+G ++ D D ++ G +VHAR
Sbjct: 124 SQVRRAVPKDIPVTAKMRLGYENT---DGALDCARALADGGAAQIVVHAR 170
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 132 (51.5 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 48/205 (23%), Positives = 88/205 (42%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + D E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I+ VR +
Sbjct: 108 CPQMIAKRGRYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRV-FPEIDKT--VR-YAQM 163
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R K P + + ++K + + NG I+ ++
Sbjct: 164 LEKAGCQLLTVHGRTKEQK--GPMAGTA----SWEHIKAVRKAVG-IPVFANGNIRCLQD 216
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
++ + + GVM NP L
Sbjct: 217 VERCIQDTGVQGVMSAEGNLHNPAL 241
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 128 (50.1 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 51/204 (25%), Positives = 88/204 (43%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + D E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTK-PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
CP + G +GA L + LL I A S +T K R+ +I+ VR +
Sbjct: 108 CPQMIAKRGHYGAFLQEEWDLLQRMSILAWTTS-SXPVTCKIRV-FPEIDKT--VR-YAQ 162
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
+ AGC+ VH R K P + + ++K + + NG I+ +
Sbjct: 163 MLEKAGCQLLTVHGRTKEQK--GPLSGTA----SWEHIKAVRKAVT-IPVFANGNIQCLR 215
Query: 200 EID--LHLNYIDGVMLGREAYKNP 221
+++ + + GVM EA +P
Sbjct: 216 DVERCIQDTGVQGVMSAGEAVPSP 239
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 132 (51.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 51/209 (24%), Positives = 88/209 (42%)
Query: 22 YTEMFTTQAILGN---KKHCLDFNA--EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEIN 76
YT M Q L + ++ L A E+ P+ Q N+P+ ++A + Q + D I+
Sbjct: 45 YTPMLHAQVFLRDANYRRENLYGEACPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAID 103
Query: 77 LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD 136
LN GCP + G +GA L + L+ I + + + IT K R+ +I D
Sbjct: 104 LNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLANEKLSVPITCKIRV-FPEI---DKTVK 159
Query: 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196
+ + AGC+ VH R K P + + + ++K + + NG I+
Sbjct: 160 YAQMLEKAGCQLLTVHGRTKEQK--GPLAG----VASWEHIQAVRKAV-SIPVFANGNIQ 212
Query: 197 TKKEID--LHLNYIDGVMLGREAYKNPFL 223
+++ + + GVM NP L
Sbjct: 213 CLSDVEECIRKTGVHGVMSAEGNLHNPAL 241
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 132 (51.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 51/209 (24%), Positives = 88/209 (42%)
Query: 22 YTEMFTTQAILGN---KKHCLDFNA--EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEIN 76
YT M Q L + ++ L A E+ P+ Q N+P+ ++A + Q + D I+
Sbjct: 45 YTPMLHAQVFLRDANYRRENLYGEACPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAID 103
Query: 77 LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD 136
LN GCP + G +GA L + L+ I + + + IT K R+ +I D
Sbjct: 104 LNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLANEKLSVPITCKIRV-FPEI---DKTVK 159
Query: 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196
+ + AGC+ VH R K P + + + ++K + + NG I+
Sbjct: 160 YAQMLEKAGCQLLTVHGRTKEQK--GPLAG----VASWEHIQAVRKAV-SIPVFANGNIQ 212
Query: 197 TKKEID--LHLNYIDGVMLGREAYKNPFL 223
+++ + + GVM NP L
Sbjct: 213 CLSDVEECIRKTGVHGVMSAEGNLHNPAL 241
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/182 (27%), Positives = 86/182 (47%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ P+ +A++A + + G I+LN GCPS V G+IL+ P + I
Sbjct: 68 PVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQII 127
Query: 107 KAMRDSVEID--ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
KA++++V D ++ K R+G +D + V +AG +HAR KL
Sbjct: 128 KAVKEAVPSDTIVSAKIRLGYEDKT---LAIENGQAVEAAGANELTIHART----KL--- 177
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG---VMLGREAYKNP 221
+ K P ++++ +K + +I NG I ++ + I G +M+GR A P
Sbjct: 178 EGYKPPA-HWHWIAKVKNAI-NIPVIANGEIWNLEDA-IKCREISGCTDLMVGRGALTIP 234
Query: 222 FL 223
L
Sbjct: 235 NL 236
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/182 (27%), Positives = 86/182 (47%)
Query: 47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI 106
P+ Q+ P+ +A++A + + G I+LN GCPS V G+IL+ P + I
Sbjct: 68 PVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQII 127
Query: 107 KAMRDSVEID--ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK 164
KA++++V D ++ K R+G +D + V +AG +HAR KL
Sbjct: 128 KAVKEAVPSDTIVSAKIRLGYEDKT---LAIENGQAVEAAGANELTIHART----KL--- 177
Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDG---VMLGREAYKNP 221
+ K P ++++ +K + +I NG I ++ + I G +M+GR A P
Sbjct: 178 EGYKPPA-HWHWIAKVKNAI-NIPVIANGEIWNLEDA-IKCREISGCTDLMVGRGALTIP 234
Query: 222 FL 223
L
Sbjct: 235 NL 236
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/205 (22%), Positives = 86/205 (41%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + + E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I D +
Sbjct: 108 CPQMIAKRGHYGAFLQEEWDLLQRMILLAHEKLSVPVTCKIRV-FPEI---DKTVKYAQM 163
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R K P + + ++K + + NG I+ ++
Sbjct: 164 LEKAGCQLLTVHGRTKEQK--GPLSGTA----SWEHIKAVRKAVA-IPVFANGNIQCLRD 216
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
++ + + GVM NP L
Sbjct: 217 VERCIQDTGVQGVMSAEGNLHNPAL 241
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/134 (26%), Positives = 63/134 (47%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + + E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I+ VR +
Sbjct: 108 CPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRV-FPEIDKT--VR-YAQM 163
Query: 141 VSSAGCRTFIVHAR 154
+ AGC+ VH R
Sbjct: 164 LEKAGCQLLTVHGR 177
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 130 (50.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 46/205 (22%), Positives = 86/205 (41%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + + E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT 140
CP + G +GA L + L+ I + + + +T K R+ +I D +
Sbjct: 108 CPQMIAKRGHYGAFLQEEWDLLQRMILLAHEKLSVPVTCKIRV-FPEI---DKTVKYAQM 163
Query: 141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE 200
+ AGC+ VH R K P + + ++K + + NG I+ ++
Sbjct: 164 LEKAGCQLLTVHGRTKEQK--GPLSGTA----SWEHIKAVRKAVA-IPVFANGNIQCLRD 216
Query: 201 ID--LHLNYIDGVMLGREAYKNPFL 223
++ + + GVM NP L
Sbjct: 217 VERCIQDTGVQGVMSAEGNLHNPAL 241
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 46/183 (25%), Positives = 83/183 (45%)
Query: 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN-RVQNGFFGAILMTKPLLV 102
E + + FQ+G P+ ++AK++ I+LNCGCP + V G +L + LV
Sbjct: 80 EANRLIFQLGSASPELAVEAAKLVAN-DVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLV 138
Query: 103 S--DC-IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK 159
S D + + +I I+ K R+ + + + V + G R VH R ++
Sbjct: 139 SILDALVNEIGKPYKISISCKIRL----LETKEDTLKLVERICDTGVRAITVHCRTTPMR 194
Query: 160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREA 217
P + + N KD + I++NG + + + +D+ Y +DGV++ R A
Sbjct: 195 NTEPADRSYLSEI-VGVCRN--KD---VSILVNGDVLSYNDGLDVIEKYGVDGVLIARAA 248
Query: 218 YKN 220
+N
Sbjct: 249 ERN 251
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 126 (49.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 49/225 (21%), Positives = 90/225 (40%)
Query: 7 HCRMF--HRQITRYSWLYTEMFTTQAILGNKKHCLDFN-AEEHPIAFQVGDNEPKKLAKS 63
H R+F H ++ T + G+ LD N A + P+ Q N+P +
Sbjct: 81 HARLFEEHAGYRAKAFHPTRAWGDTKCKGDDSPYLDGNPAIDRPLFVQFCANDPDDFFNA 140
Query: 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123
A+ + + D ++LN GCP + G +GA L L+ I + +E+ +T K RI
Sbjct: 141 ARHVAPY-CDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHMELEVPVTAKFRI 199
Query: 124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD 183
S + ++ + SAG +H R ++ + ++++ L+ +
Sbjct: 200 Q----ESKEKTLEYAKMILSAGASIITLHGRT------REQKGHNTGLADWSYIRYLRDN 249
Query: 184 FP-ELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFLMS 225
P + I NG ++ L DGVM +P + +
Sbjct: 250 LPPDTVIFANGNNLNHDDLARCLEATGADGVMSAEGNLSDPSIFA 294
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 124 (48.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 60/250 (24%), Positives = 110/250 (44%)
Query: 22 YTEM-FTTQAILG-NKKHCLD-FNAEEHP-IAFQVGDNEPKKLAKSAKIIQK--WGYDEI 75
Y+EM + I G N + L + E+P Q+ ++ AK+A+ I + E+
Sbjct: 273 YSEMALSVPLIQGHNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSEL 332
Query: 76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-DSVEIDITVKHRIGIDDINSYDFV 134
NLNCGCP + + G+ L+ +P + + M S +I +TVK R GI + +
Sbjct: 333 NLNCGCPIDLLYKQGQGSALLDQPSKLLRILSGMNASSGDIPVTVKIRTGIKE--GKNTA 390
Query: 135 RDFVGTVSSAGCRTFI-VHARNA---FLKKLNPKQNRKIPILKYNFVYNLK-----KDFP 185
+ V V G I +H R+ + K+ + ++ + N+ K +D
Sbjct: 391 VNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNYIAEVGTVVKNWNEQQKEDKEGRDRD 450
Query: 186 ELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTR 243
+ + NG + + ++ H+N ID VM+ R A P++ + Y + + R
Sbjct: 451 PVYFVGNGDVYSHEDWYEHVNTDGIDSVMVARGALIKPWIFEEVEAQQYLDKSSSE---R 507
Query: 244 IDIINRMILY 253
+DI+ + Y
Sbjct: 508 LDILGKFAKY 517
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 124 (48.7 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 60/250 (24%), Positives = 110/250 (44%)
Query: 22 YTEM-FTTQAILG-NKKHCLD-FNAEEHP-IAFQVGDNEPKKLAKSAKIIQK--WGYDEI 75
Y+EM + I G N + L + E+P Q+ ++ AK+A+ I + E+
Sbjct: 273 YSEMALSVPLIQGHNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSEL 332
Query: 76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-DSVEIDITVKHRIGIDDINSYDFV 134
NLNCGCP + + G+ L+ +P + + M S +I +TVK R GI + +
Sbjct: 333 NLNCGCPIDLLYKQGQGSALLDQPSKLLRILSGMNASSGDIPVTVKIRTGIKE--GKNTA 390
Query: 135 RDFVGTVSSAGCRTFI-VHARNA---FLKKLNPKQNRKIPILKYNFVYNLK-----KDFP 185
+ V V G I +H R+ + K+ + ++ + N+ K +D
Sbjct: 391 VNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNYIAEVGTVVKNWNEQQKEDKEGRDRD 450
Query: 186 ELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTR 243
+ + NG + + ++ H+N ID VM+ R A P++ + Y + + R
Sbjct: 451 PVYFVGNGDVYSHEDWYEHVNTDGIDSVMVARGALIKPWIFEEVEAQQYLDKSSSE---R 507
Query: 244 IDIINRMILY 253
+DI+ + Y
Sbjct: 508 LDILGKFAKY 517
>CGD|CAL0003882 [details] [associations]
symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
Uniprot:Q59YG4
Length = 433
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 51/192 (26%), Positives = 85/192 (44%)
Query: 48 IAFQVGDNEPKKLAKSA-KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP-LLVSDC 105
+ Q+G ++P+ +A K+I D I+LNCGCP N + GA L+ P L S
Sbjct: 84 LILQLGSSDPQLAVDAARKVIDD--VDGIDLNCGCPKNFSTHSGMGAELLKTPDKLCSIL 141
Query: 106 IKAMRDSVEIDITVKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 163
I + +I I K I I N+YD ++ + + G +H R ++
Sbjct: 142 INLVE---KIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLTIHCRTPIMR---- 194
Query: 164 KQNRKIPILKYNFVYNLKKDFPE--LEIIINGGIKTK---KEIDLHLNYIDG----VMLG 214
NR+ P+ +NF+ L + ++ING ++ K + LN G +M+
Sbjct: 195 --NRQDPV--WNFLPKLIPIIQTAGVNLVINGNMQNVADLKNLQSALNDNGGGKLSIMIA 250
Query: 215 REAYKNPFLMSN 226
A NP + S+
Sbjct: 251 EAAEANPSVFSH 262
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 50/209 (23%), Positives = 88/209 (42%)
Query: 21 LYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG 80
L+ ++F A + D E+ P+ Q N+P+ ++A + Q + D I+LN G
Sbjct: 49 LHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLG 107
Query: 81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRD----SVEIDITVKHRIGIDDINSYDFVRD 136
CP + G +GA L + D ++ MR V +T K R+ +I+ VR
Sbjct: 108 CPQMIAKRGHYGAFLQEE----WDLLQRMRTWGHMVVGCPVTCKIRV-FPEIDKT--VR- 159
Query: 137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK 196
+ + AGC+ VH R K P + + ++K + + NG I+
Sbjct: 160 YAQMLEKAGCQLLTVHGRTKEQK--GPLSGTA----SWEHIKAVRKAVT-IPVFANGNIQ 212
Query: 197 TKKEID--LHLNYIDGVMLGREAYKNPFL 223
++++ + + GVM NP L
Sbjct: 213 CLRDVERCIQDTGVQGVMSAEGNLHNPAL 241
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 113 (44.8 bits), Expect = 0.00061, P = 0.00061
Identities = 27/111 (24%), Positives = 55/111 (49%)
Query: 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 103
E+ + FQ+G ++ + K+++I+ I++N GCP G GA L++KP L+
Sbjct: 74 EKSRVVFQMGTSDAVRALKASEIVCN-DVATIDINMGCPKAFSIQGGMGAALLSKPELIH 132
Query: 104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 154
D + ++ ++++ +T K R+ ++ + R + G VH R
Sbjct: 133 DILATLKRNLDVPVTCKIRLLKSPADTVELAR----RIEKLGVPALAVHGR 179
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 116 (45.9 bits), Expect = 0.00077, P = 0.00077
Identities = 34/171 (19%), Positives = 75/171 (43%)
Query: 57 PKKLAKSAKII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI 115
P + K A+++ Q D +++N GCP + V G LMT+ ++ M +++
Sbjct: 351 PDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFEQIVRGMNSVLDV 410
Query: 116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
+TVK R G+ + + + + G +H R+ ++ R + ++
Sbjct: 411 PLTVKIRTGVQE--KMNVAHKIIPKIREWGASMVTLHGRS--------REQRYTRVADWD 460
Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMS 225
++ K + + NG I + ++ + + + G+M+ R A P+L +
Sbjct: 461 YIAECAKIASPMPLFGNGDILSYEDANQAMQTGVSGIMIARGALIKPWLFT 511
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 114 (45.2 bits), Expect = 0.00091, P = 0.00091
Identities = 44/184 (23%), Positives = 73/184 (39%)
Query: 44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 103
E H + FQ+G + + AK+++ I++N GCP G GA L++ P +
Sbjct: 79 ERHRVIFQMGSADAGRALAVAKLVES-DVAGIDINMGCPKEYSTKGGMGAALLSDPDKIE 137
Query: 104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP 163
+ + + +T K RI + S + D V + G VH R K+ P
Sbjct: 138 SILTTLVKGICKPVTCKIRI----LPSVEDTVDLVKRIEKTGIAAIAVHGRLERKKEERP 193
Query: 164 KQNRKIPILKYNFVYNLKKDFPELEIIINGG----IKTKKEIDLH--LNYIDGVMLGREA 217
+ ++K + + +I NGG IK +I+ VM+ R A
Sbjct: 194 QHPVHCDVIK------AISEAVSIPVIANGGSHDFIKEYGDIETFQKATAASSVMIARAA 247
Query: 218 YKNP 221
NP
Sbjct: 248 MWNP 251
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.141 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 311 302 0.00097 115 3 11 22 0.47 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 607 (65 KB)
Total size of DFA: 215 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.13u 0.12s 25.25t Elapsed: 00:00:02
Total cpu time: 25.15u 0.12s 25.27t Elapsed: 00:00:02
Start: Thu Aug 15 14:20:17 2013 End: Thu Aug 15 14:20:19 2013