RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2386
(311 letters)
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 467 bits (1205), Expect = e-167
Identities = 114/292 (39%), Positives = 182/292 (62%), Gaps = 7/292 (2%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
++ TDRH R RQ++ LYTEM QA+L GN++ L F EEHPIA Q+ ++PK
Sbjct: 12 VDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKS 71
Query: 60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
LA++A+I + +GYDEINLN GCPS + Q G +GA L+ V + +KAM ++V + +TV
Sbjct: 72 LAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTV 131
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
K R+G++ +Y + V ++ AG + F+VHAR+A L L+ K NR+IP L++++V+
Sbjct: 132 KMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHR 190
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
LK DFP+L + NGGI++ +E HL +DGVMLGR Y++PF++ D + +
Sbjct: 191 LKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRVFGL---PR 247
Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
P+R+++ RM Y+ +++ ++ RHML L + ++++LS
Sbjct: 248 RPSRLEVARRMRAYLEEEVLKG--TPPWAVLRHMLNLFRGRPKGRLWRRLLS 297
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 119 bits (301), Expect = 9e-32
Identities = 58/286 (20%), Positives = 121/286 (42%), Gaps = 39/286 (13%)
Query: 20 WLYTEMFTTQAIL-GNKK-HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77
+ ++EM + + L ++K L E +A Q+ +EP +L+++A+I+ + Y I+L
Sbjct: 31 FAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDL 89
Query: 78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 137
N GCP +V G L+ ++ +R SV +VK R+G + + R
Sbjct: 90 NAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR-- 147
Query: 138 VGTVSSAGCRTFIVHAR--------NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189
+ G +H R A ++ + L+K P
Sbjct: 148 --ILVEEGVDEVFIHTRTVVQSFTGRA----------------EWKALSVLEKRIP---T 186
Query: 190 IINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDII 247
++G I T ++ L DG+++ R A P++ + + +Y P+R +I+
Sbjct: 187 FVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK--QIKDFLRSGKYSEPSREEIL 244
Query: 248 NRMILYIRQQLNN-NKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
++ + + K + + + + G K++KG+ +F++ + K
Sbjct: 245 RTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMK 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 46/348 (13%), Positives = 109/348 (31%), Gaps = 110/348 (31%)
Query: 5 DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSA 64
+ C++ TR+ + T H + + H + +
Sbjct: 263 NLSCKIL--LTTRFKQV-----TDFLSAATTTH---ISLDHHSMTLT--------PDEVK 304
Query: 65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
++ K+ L+C + +L T P +S +++RD
Sbjct: 305 SLLLKY------LDCRPQDLPRE------VLTTNPRRLSIIAESIRD------------- 339
Query: 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR-------------KIP- 170
+ ++D + C + L L P + R IP
Sbjct: 340 --GLATWDNWKHV-------NCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 171 ----ILKYNFVYN--------------LKKDFPELEIIINGG-----IKTKKEIDLHLNY 207
++ ++ + + ++K E I I +K + E LH +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 208 IDGVMLGREAYKNPFLMSNFDLNYYSN-----LPQYKIPTRIDIINRMIL---YIRQQLN 259
+D + + + + D Y+ + L + P R+ + + L ++ Q++
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 260 NNKI-KNINSITRHMLGLMKNIKG-----SNKFKQILSKPNLLTIDNF 301
++ N + + L +K K K++++++ I +F
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILDF 551
Score = 37.1 bits (85), Expect = 0.008
Identities = 48/354 (13%), Positives = 102/354 (28%), Gaps = 116/354 (32%)
Query: 18 YSWLY----TEMFTTQAILGNKKHCLD--FNAEEHPIAFQVGDNEP-KKLAKSAKIIQKW 70
Y +L TE + D +N + + V +P KL ++ ++
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 71 GYDEINLN----CG--------CPSNRVQNGFFGAI------------LMTKPL--LVSD 104
+ ++ G C S +VQ I + + L L+
Sbjct: 151 KN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 105 CIKAMRDSVEIDITVKHRIG---------------------IDDINSYDFVRDFVGTVSS 143
+ +K RI + ++ + F +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----N 263
Query: 144 AGCRTFIVHARNAFL-KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-I 201
C+ ++ R + L+ I + ++ T E
Sbjct: 264 LSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTL------------------TPDEVK 304
Query: 202 DLHLNYIDGVM--LGREAYK-NPFLMSNFDLNYYSNLPQYKIPTRI-DIINRMILYIRQQ 257
L L Y+D L RE NP +S I I D + + +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLS-------------IIAESIRDGLATWDNW--KH 349
Query: 258 LNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP 311
+N +K+ I + + ++ +++++ + L++ F + +IP
Sbjct: 350 VNCDKLTTIIESS------LNVLE-PAEYRKMFDR---LSV-----FPPSAHIP 388
Score = 36.4 bits (83), Expect = 0.012
Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 51/199 (25%)
Query: 136 DFVGTVSSAGCRTFIVHARNAFLKKLNPK--QNRKIPILKYNFVYNLKKDFPELEIIING 193
DF + + +AF+ + K Q+ IL K+ E++ II
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-------KE---EIDHIIM- 56
Query: 194 GIKTKKEIDLHLNYIDGVML--GREAYKNPFLMSNFDLNY---YSNL-PQYKIPTRIDII 247
K+ + +L E + F+ +NY S + + + P+ +
Sbjct: 57 ----SKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMM--- 108
Query: 248 NRMILYI--RQQLNN----------NKIKNINSITRHMLGL--MKNI-----KGSNK--- 285
+YI R +L N ++++ + + +L L KN+ GS K
Sbjct: 109 --TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 286 FKQILSKPNLLTIDNFQFF 304
+ + +F+ F
Sbjct: 167 ALDVCLSYKVQCKMDFKIF 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.34
Identities = 37/284 (13%), Positives = 79/284 (27%), Gaps = 112/284 (39%)
Query: 13 RQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY 72
++I Y+ M + +D + I ++ + S +
Sbjct: 1682 KRIRE---NYSAMIF--------ETIVDGKLKTEKIFKEINE-------HSTSYT--FRS 1721
Query: 73 DEINLNCGCPSNRVQNGFFGAILMTKP--LLVSDCI-KAMRDSVEIDITVKHRIGIDDIN 129
++ L+ Q T+P L+ + ++ G+ +
Sbjct: 1722 EKGLLS------ATQF--------TQPALTLMEKAAFEDLKSK-----------GLIPAD 1756
Query: 130 SYDFVRDFVG--------TVSSAGCRTF-----IVHARNAFLKKLNPK--QNRKIPILKY 174
+ F G S A + +V R ++ P+ R +
Sbjct: 1757 AT-----FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-- 1809
Query: 175 NFVYNLKKDFPELEIIINGG-IKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL---N 230
I IN G + + ++ V G+ + + + N
Sbjct: 1810 --------------IAINPGRVAASFSQEALQYVVERV--GKR--------TGWLVEIVN 1845
Query: 231 YYSNLP--QYKI---PTRIDIINRMILYIRQQLNNNKIKNINSI 269
Y N+ QY +D + + LN K++ I+ I
Sbjct: 1846 Y--NVENQQYVAAGDLRALDTVTNV-------LNFIKLQKIDII 1880
Score = 30.0 bits (67), Expect = 1.2
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 45/135 (33%)
Query: 26 FTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR 85
F + GN + H +A ++ L K+ ++I+ Y + P ++
Sbjct: 91 FENCYLEGN---------DIHALAAKLLQENDTTLVKTKELIK--NYITARIMAKRPFDK 139
Query: 86 ---------VQNG------FFG-------------AILMTKPLLVSDCIKAMRDSVE--- 114
V G FG + T +LV D IK +++
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 115 ---IDITVKHRIGID 126
+D G++
Sbjct: 200 RTTLDAEKVFTQGLN 214
Score = 28.5 bits (63), Expect = 4.0
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 13/42 (30%)
Query: 2 NLTDRHCRMFHRQITRYS--WLYTEMFTTQAILGNKKHCLDF 41
++++R I R W T F H LDF
Sbjct: 474 SISERIVDC----IIRLPVKWETTTQFKAT-------HILDF 504
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 30.7 bits (70), Expect = 0.49
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 182 KDFPE-LEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQ 237
D + L + +N Y + Y N + F +N S +P
Sbjct: 54 NDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPI 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.7
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 32/60 (53%)
Query: 55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE 114
KKL S K+ Y + P L IKA ++E
Sbjct: 20 QALKKLQASLKL-----Y--------ADD-------------SAPALA---IKA---TME 47
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.4 bits (66), Expect = 2.0
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI 123
++ + G D + LN CP + G G P LV + + +R +V+I K
Sbjct: 654 SRKAEASGADALELNLSCPHGMGERG-MGLACGQDPELVRNICRWVRQAVQIPFFAKLTP 712
Query: 124 GIDDI 128
+ DI
Sbjct: 713 NVTDI 717
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 28.7 bits (65), Expect = 2.4
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
LV D M+ + ++ V ++ +D IN
Sbjct: 328 SRLVDDY---MKKKINVNFLVSTKLTLDQIN 355
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family,
OYE-like FMN-binding domain, TIM B oxidoreductase; HET:
PGE; 1.65A {Staphylococcus aureus}
Length = 419
Score = 28.8 bits (65), Expect = 2.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 189 IIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFL 223
+I +GGI + + L + D V + P
Sbjct: 321 LIASGGINSPESALDALQHADMVGMSSPFVTEPDF 355
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 2.5
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 11 FHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHP---IAFQVGDNEPKKLAKSAKII 67
R ++ E+ T+ K L E P IA ++ NE +
Sbjct: 144 LIRIVSGL-----ELSDTKQ---KGKKFLVIAYE--PFENIAIELPPNEILFSENNDMDN 193
Query: 68 QKWGYDEINLNC 79
G DE+N C
Sbjct: 194 NNDGVDELNKKC 205
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 28.7 bits (64), Expect = 2.7
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLP 236
+ N +P+ N K + H NY + G + + ++ + N+P
Sbjct: 101 LANTNPLYPDFSTSANNIQIDKTKPLWH-NYFLCGLKGIQEHFGLSNLTGMNCLVDGNIP 159
Query: 237 Q 237
Sbjct: 160 P 160
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
P LVSD ++D+ V H + + IN
Sbjct: 331 PNLVSDY---KNKKFDLDLLVTHALPFESIN 358
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 28.0 bits (63), Expect = 4.0
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
P +V + V++D + HR+ ++ +N
Sbjct: 329 PKMVKAY---LDKKVKLDEFITHRMPLESVN 356
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 27.6 bits (62), Expect = 5.3
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 15/61 (24%)
Query: 217 AYKNP-----FLMSNFDLNYY-------SNLPQYKIPTRIDIINRMILYIRQQLNNNKIK 264
+ ++ + + PQYK+PT + +++ K+
Sbjct: 253 VAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPP---KSKLIISSEKLV 309
Query: 265 N 265
Sbjct: 310 K 310
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 27.4 bits (61), Expect = 5.6
Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 18/165 (10%)
Query: 39 LDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK 98
+ I +G AK + ++ G + + ++ V
Sbjct: 110 VRKENPNGLIFANLGSEATAAQAK--EAVEMIGANALQIHLNVIQEIVMPEG-----DRS 162
Query: 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT------VSSAGCRTFIVH 152
I+ + V + + VK + S + G F
Sbjct: 163 FSGALKRIEQICSRVSVPVIVK---EVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKI 219
Query: 153 ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT 197
++++ + I + ++ +FP +I +GG++
Sbjct: 220 ENLRRQRQISFFNSWGISTAAS--LAEIRSEFPASTMIASGGLQD 262
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 27.6 bits (62), Expect = 6.2
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 217 AYKNP-----FLMSNFDLNYY-------SNLPQYKIPTRIDIINRMILYIRQQLNNNKIK 264
++NP ++ S+ D P+Y IPT ++ + + ++ K+
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSV--CFSSKKLT 298
Query: 265 N 265
+
Sbjct: 299 D 299
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 26.8 bits (60), Expect = 9.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
P LVS+ M +++D V H + D+IN
Sbjct: 328 PKLVSEY---MSKKIKVDEFVTHNLSFDEIN 355
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 26.8 bits (60), Expect = 10.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDIN 129
P LV+D M +D + H + + IN
Sbjct: 329 PKLVADF---MAKKFALDPLITHVLPFEKIN 356
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.423
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,821,785
Number of extensions: 291185
Number of successful extensions: 662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 36
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)