RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2386
(311 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 113 bits (282), Expect = 7e-30
Identities = 60/297 (20%), Positives = 120/297 (40%), Gaps = 24/297 (8%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
TD R + + ++EM + + L K L E +A Q+ +EP
Sbjct: 9 AGYTDSAFRTLAFEWGA-DFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPN 67
Query: 59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
+L+++A+I+ + Y I+LN GCP +V G L+ ++ +R SV +
Sbjct: 68 ELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFS 126
Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
VK R+G + + R V G +H R + + + +L
Sbjct: 127 VKTRLGWEKNEVEEIYRILV----EEGVDEVFIHTRTVVQSFTGRAEWKALSVL------ 176
Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLP 236
+ ++G I T ++ L DG+++ R A P++ S
Sbjct: 177 -----EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSG-- 229
Query: 237 QYKIPTRIDIINRMILYIRQQLNN-NKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
+Y P+R +I+ ++ + + K + + + + G K++KG+ +F++ + K
Sbjct: 230 KYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMK 286
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 74.7 bits (182), Expect = 7e-16
Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 11/249 (4%)
Query: 9 RMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ 68
R+ + + + + I+ K L+ N E PI V +E I
Sbjct: 62 RVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIG 121
Query: 69 KW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127
I LN CP+ + F T P + + +KA + ++ + VK + D
Sbjct: 122 DAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTD 177
Query: 128 INSYDFVRD------FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK 181
I + + G R + + I + ++ +
Sbjct: 178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA 237
Query: 182 KDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIP 241
+D I + G + +++++ V +G + +PF+ + QY+I
Sbjct: 238 QDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRIE 297
Query: 242 TRIDIINRM 250
+ +I +
Sbjct: 298 SLESLIQEV 306
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 54.6 bits (130), Expect = 3e-09
Identities = 34/233 (14%), Positives = 66/233 (28%), Gaps = 14/233 (6%)
Query: 3 LTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAK 62
T Q + + T + + IA + +
Sbjct: 61 GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWME 120
Query: 63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122
++ + G D + LN CP + G P LV + + +R +V+I K
Sbjct: 121 LSRKAEASGADALELNLSCPHGMGERGMGL-ACGQDPELVRNICRWVRQAVQIPFFAKLT 179
Query: 123 IGIDDINS-----YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK-------IP 170
+ DI S + D V ++ + + K+ I
Sbjct: 180 PNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIR 239
Query: 171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222
+ V + + P I+ GGI + + L+ + + F
Sbjct: 240 PIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDF 292
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 45.7 bits (107), Expect = 3e-06
Identities = 32/250 (12%), Positives = 76/250 (30%), Gaps = 30/250 (12%)
Query: 1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
M ++ G + A + + P +L
Sbjct: 73 MLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAP-SALQAPINRFVPHEL 131
Query: 61 ------------AKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKP 99
A+ A++ ++ GYD + + ++ +G +
Sbjct: 132 SHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRM 191
Query: 100 LLVSDCIKAMRDSVEIDITVKHRIGID----DINSYDFVRDFVGTVSSAGCRTFIVHARN 155
+ ++A+R+ V D + +R+ + D ++ + + +AG I++
Sbjct: 192 RFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGA--TIINTGI 249
Query: 156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVML 213
+ + P +P +++V K L ++ I + D L D V +
Sbjct: 250 GWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSM 309
Query: 214 GREAYKNPFL 223
R + L
Sbjct: 310 ARPFLADAEL 319
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 39.6 bits (91), Expect = 3e-04
Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 31/244 (12%)
Query: 5 DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL---- 60
D H F + + +++ A G K IAF P ++
Sbjct: 78 DEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEK 137
Query: 61 --------AKSAKIIQKWGYD--EINLNCG-------CPSNRVQNGFFGAILMTKPLLVS 103
++A ++ G+D EI+ G P + + +G + +
Sbjct: 138 VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLR 197
Query: 104 DCIKAMRDSVEIDITVKHRI--GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 161
+ I ++ + + V+ D F + G +
Sbjct: 198 EIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALV---- 253
Query: 162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYK 219
P + +F +++ + G I + L D + +GRE +
Sbjct: 254 -HADINVFPGYQVSFAEKIREQAD-MATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311
Query: 220 NPFL 223
+PF
Sbjct: 312 DPFF 315
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 36.0 bits (82), Expect = 0.004
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 14/173 (8%)
Query: 61 AKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 111
++A+ ++ G+D + ++ + +G + + + + A+ +
Sbjct: 166 RQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAE 225
Query: 112 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 171
+ ++ D + + A+L P
Sbjct: 226 VFGPERVGIRLTPFLELFGLT---DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT 282
Query: 172 LKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNYIDGVMLGREAYKNPFL 223
F +++ F +I G + + L N D V GR NP L
Sbjct: 283 YPEGFREQMRQRFK-GGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDL 334
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 34.2 bits (77), Expect = 0.016
Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 7/173 (4%)
Query: 58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI 117
+ A + + + L P + +G L + + ++ ++ +V D
Sbjct: 158 SRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDC 217
Query: 118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV 177
+ R G+D + + V +V + + + P Y
Sbjct: 218 AIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQG 277
Query: 178 YNLK-----KDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 223
+ + K + ++ G +++ + Y D + R + +PFL
Sbjct: 278 HTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase
{Enterobacter cloacae [TaxId: 550]}
Length = 363
Score = 30.7 bits (68), Expect = 0.22
Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 32/253 (12%)
Query: 7 HCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAK---- 62
+++H +S + + + +E+ A +V P+ L
Sbjct: 97 AVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIP 156
Query: 63 --------SAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDC 105
+ ++ G+D + L+ PS+ + +G + + LV +
Sbjct: 157 GIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEV 216
Query: 106 IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ 165
+ A+ + D I + D + + A + R ++
Sbjct: 217 VDAVCNEWSADRIGIRVSPIGTFQNVDNGPN---EEADALYLIEELAKRGIAYLHMSETD 273
Query: 166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYKNPFL 223
F +++ F +II G T ++ + + ID V GR+ NP L
Sbjct: 274 LAGGKPYSEAFRQKVRERFHG--VIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDL 331
Query: 224 ----MSNFDLNYY 232
+LN
Sbjct: 332 VARLQKKAELNPQ 344
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 28.0 bits (61), Expect = 1.6
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 19/185 (10%)
Query: 63 SAKIIQKWGYD--EIN-----LNCGCPSNRV--QNGFFGAILMTKPLLVSDCIKAMRDSV 113
+A+ + G+D EI+ L ++V ++ +G L + + ++A+ + +
Sbjct: 163 AARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEI 222
Query: 114 EIDITVKHRI-GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL 172
D + D +G + + + P+ +
Sbjct: 223 GSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVV----EPRMKTAWEKI 278
Query: 173 KYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNYIDGVMLGREAYKNPFL----MSNF 227
+ + + I+ GG + L + D V GR NP L N
Sbjct: 279 ECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFELNA 338
Query: 228 DLNYY 232
LN Y
Sbjct: 339 PLNKY 343
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus
[TaxId: 11234]}
Length = 54
Score = 25.3 bits (55), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 271 RHMLGLMKNIKGS---NKFKQILSK 292
R+++ L+ +IKG+ KF Q+L K
Sbjct: 21 RYLMTLLDDIKGANDLAKFHQMLVK 45
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215
{Salmonella typhimurium [TaxId: 90371]}
Length = 134
Score = 26.3 bits (58), Expect = 2.5
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 112 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL 158
+ I TV D IN+ D +R +G + C + ++
Sbjct: 65 LIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYI 111
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 26.6 bits (58), Expect = 4.2
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 163 PKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKTKKEIDLHLNYIDGVMLG 214
++ + + N L +I+ GI T ++ ++ +G ++G
Sbjct: 184 NNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANGFLIG 236
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Thale cress (Arabidopsis thaliana), OPR3
[TaxId: 3702]}
Length = 380
Score = 26.4 bits (57), Expect = 4.3
Identities = 17/162 (10%), Positives = 45/162 (27%), Gaps = 5/162 (3%)
Query: 66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL---LVSDCIKAMRDSVEIDITVKHR 122
+I ++ D IN + N + + + + + + +
Sbjct: 185 LIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDS 244
Query: 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK 182
+ + + + + V+ + V + + + +L+
Sbjct: 245 DPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 304
Query: 183 DFPELEIIINGGIKTKK-EIDLHLNYIDGVMLGREAYKNPFL 223
+ + +GG + + D V GR NP L
Sbjct: 305 AYN-GTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDL 345
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 26.2 bits (57), Expect = 5.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLG 214
V +KK + + GGI ++++ L Y D +++G
Sbjct: 178 VAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVG 215
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 25.7 bits (56), Expect = 8.1
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 13 RQITRYSWLYTEMF-----TTQAILGNKKHCLDF 41
R R+ W+ +F + + L K L F
Sbjct: 185 RNYYRFGWVIPYLFGASPAISSSFLQGKPTSLPF 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.423
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,218,371
Number of extensions: 60291
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 24
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)