Query psy2388
Match_columns 159
No_of_seqs 138 out of 1027
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:42:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00486 YbgI_SA1388 dinuclea 100.0 9.1E-47 2E-51 305.0 16.6 150 1-159 56-206 (249)
2 PF01784 NIF3: NIF3 (NGG1p int 100.0 1.5E-46 3.3E-51 302.3 10.1 149 1-158 52-208 (241)
3 PRK10799 metal-binding protein 100.0 1.9E-44 4.1E-49 291.2 16.0 149 1-159 55-204 (247)
4 COG0327 Uncharacterized conser 100.0 4.1E-40 8.8E-45 266.5 15.4 150 1-159 56-207 (250)
5 KOG4131|consensus 100.0 1.9E-31 4.1E-36 211.0 10.1 144 1-158 65-223 (272)
6 TIGR00486 YbgI_SA1388 dinuclea 96.5 0.0092 2E-07 48.3 6.6 55 93-147 1-63 (249)
7 PF01784 NIF3: NIF3 (NGG1p int 95.7 0.035 7.6E-07 44.7 6.2 38 110-147 22-59 (241)
8 PRK10799 metal-binding protein 94.7 0.12 2.7E-06 41.7 6.7 53 94-147 2-62 (247)
9 COG0327 Uncharacterized conser 90.3 1.1 2.5E-05 36.4 6.6 39 109-147 25-63 (250)
10 PRK00124 hypothetical protein; 82.5 5.6 0.00012 30.1 6.2 59 92-151 9-77 (151)
11 COG1671 Uncharacterized protei 82.0 6.6 0.00014 29.7 6.3 59 92-151 10-76 (150)
12 PF07287 DUF1446: Protein of u 78.5 11 0.00025 32.4 7.5 32 122-153 141-172 (362)
13 COG5016 Pyruvate/oxaloacetate 73.4 15 0.00032 32.4 6.8 104 24-145 99-228 (472)
14 PRK13125 trpA tryptophan synth 68.5 59 0.0013 25.9 10.9 43 24-66 89-132 (244)
15 PF13470 PIN_3: PIN domain 68.4 5.3 0.00012 27.7 2.7 20 132-151 100-119 (119)
16 cd07395 MPP_CSTP1 Homo sapiens 68.4 11 0.00023 30.1 4.7 46 4-49 168-220 (262)
17 cd07400 MPP_YydB Bacillus subt 66.8 14 0.00031 26.2 4.8 44 5-48 81-126 (144)
18 KOG3111|consensus 66.7 37 0.00081 27.1 7.2 24 23-46 74-97 (224)
19 cd07404 MPP_MS158 Microscilla 66.5 10 0.00022 27.9 4.0 44 4-47 99-149 (166)
20 PF02639 DUF188: Uncharacteriz 65.8 18 0.0004 26.5 5.1 51 100-151 3-61 (130)
21 cd06397 PB1_UP1 Uncharacterize 63.4 21 0.00046 24.2 4.6 26 84-109 11-36 (82)
22 PRK08745 ribulose-phosphate 3- 63.0 76 0.0017 25.3 8.9 29 121-149 172-200 (223)
23 PF11834 DUF3354: Domain of un 61.3 29 0.00064 22.7 4.9 36 89-126 24-60 (69)
24 COG0622 Predicted phosphoester 61.2 39 0.00085 25.9 6.4 30 121-150 82-118 (172)
25 cd07396 MPP_Nbla03831 Homo sap 59.4 16 0.00034 29.4 4.2 45 5-49 183-230 (267)
26 cd06396 PB1_NBR1 The PB1 domai 55.5 43 0.00094 22.6 5.1 30 84-113 11-42 (81)
27 PF02579 Nitro_FeMo-Co: Dinitr 55.0 12 0.00025 24.8 2.3 24 131-154 43-66 (94)
28 cd07392 MPP_PAE1087 Pyrobaculu 54.4 32 0.00069 25.2 4.9 13 2-14 124-136 (188)
29 cd07378 MPP_ACP5 Homo sapiens 54.2 20 0.00043 28.6 4.0 44 4-48 169-214 (277)
30 TIGR00305 probable toxin-antit 52.8 14 0.0003 25.7 2.5 18 132-149 91-108 (114)
31 PF02702 KdpD: Osmosensitive K 52.3 43 0.00093 26.8 5.4 67 25-104 105-174 (211)
32 smart00666 PB1 PB1 domain. Pho 51.9 52 0.0011 21.2 5.1 23 87-109 15-37 (81)
33 COG2121 Uncharacterized protei 51.1 38 0.00081 27.1 4.9 47 96-152 80-128 (214)
34 cd07399 MPP_YvnB Bacillus subt 49.6 34 0.00073 26.6 4.5 45 5-49 110-163 (214)
35 COG1569 Predicted nucleic acid 49.2 18 0.00039 27.1 2.6 20 131-150 94-113 (142)
36 PF11684 DUF3280: Protein of u 49.0 27 0.0006 25.9 3.7 58 95-152 30-91 (140)
37 COG1646 Predicted phosphate-bi 48.6 24 0.00052 28.7 3.5 57 99-155 156-227 (240)
38 PRK14042 pyruvate carboxylase 48.5 97 0.0021 28.5 7.8 44 24-67 97-140 (596)
39 PRK06027 purU formyltetrahydro 47.7 1.6E+02 0.0035 24.3 9.7 27 22-48 17-43 (286)
40 cd00842 MPP_ASMase acid sphing 46.6 28 0.00061 28.2 3.8 44 5-49 217-263 (296)
41 PRK06720 hypothetical protein; 46.4 28 0.0006 26.2 3.5 27 122-148 17-47 (169)
42 cd06407 PB1_NLP A PB1 domain i 45.6 23 0.00051 23.8 2.6 24 86-109 13-36 (82)
43 cd05992 PB1 The PB1 domain is 45.5 46 0.001 21.3 4.0 25 89-113 16-43 (81)
44 COG2217 ZntA Cation transport 45.4 1.1E+02 0.0023 28.9 7.7 96 25-149 542-642 (713)
45 PF02579 Nitro_FeMo-Co: Dinitr 45.3 33 0.00073 22.5 3.4 35 123-157 56-90 (94)
46 cd06408 PB1_NoxR The PB1 domai 44.2 45 0.00097 22.8 3.8 21 89-109 18-38 (86)
47 cd00851 MTH1175 This uncharact 44.2 33 0.00071 22.9 3.3 25 130-154 52-76 (103)
48 PRK05579 bifunctional phosphop 43.3 83 0.0018 27.3 6.3 19 130-148 217-235 (399)
49 COG1433 Uncharacterized conser 43.1 29 0.00062 25.2 2.9 54 101-154 15-78 (121)
50 COG0269 SgbH 3-hexulose-6-phos 43.0 38 0.00082 27.2 3.8 29 121-149 165-193 (217)
51 PF06283 ThuA: Trehalose utili 42.4 65 0.0014 24.9 5.1 56 2-65 52-108 (217)
52 cd06405 PB1_Mekk2_3 The PB1 do 41.5 43 0.00094 22.5 3.3 25 89-113 16-41 (79)
53 cd00853 NifX NifX belongs to a 40.0 43 0.00094 22.8 3.4 27 123-149 64-90 (102)
54 COG2204 AtoC Response regulato 39.7 41 0.00089 30.0 3.9 62 89-150 103-173 (464)
55 cd07402 MPP_GpdQ Enterobacter 38.8 51 0.0011 25.4 4.0 46 4-49 146-196 (240)
56 PRK13010 purU formyltetrahydro 38.6 90 0.002 25.9 5.6 26 22-47 20-45 (289)
57 PRK09722 allulose-6-phosphate 38.1 2.1E+02 0.0046 22.9 9.4 26 123-148 172-197 (229)
58 TIGR00655 PurU formyltetrahydr 37.2 2.4E+02 0.0051 23.3 9.9 80 22-131 11-96 (280)
59 cd01612 APG12_C Ubiquitin-like 36.9 39 0.00083 23.0 2.6 26 84-109 17-42 (87)
60 PRK11148 cyclic 3',5'-adenosin 36.3 71 0.0015 25.7 4.6 44 5-48 160-208 (275)
61 TIGR00288 conserved hypothetic 36.1 79 0.0017 24.1 4.5 31 118-148 104-136 (160)
62 PF14871 GHL6: Hypothetical gl 35.6 59 0.0013 23.7 3.6 39 8-46 23-67 (132)
63 PRK04168 molybdate ABC transpo 34.8 58 0.0013 27.4 4.0 33 124-156 63-97 (334)
64 COG1472 BglX Beta-glucosidase- 34.7 35 0.00076 29.6 2.6 56 93-149 226-282 (397)
65 KOG1654|consensus 34.6 41 0.0009 24.2 2.5 27 83-109 45-71 (116)
66 PRK08091 ribulose-phosphate 3- 34.6 67 0.0014 25.8 4.1 28 123-150 182-209 (228)
67 TIGR00971 3a0106s03 sulfate/th 34.5 59 0.0013 27.0 3.9 64 86-157 17-81 (315)
68 TIGR03884 sel_bind_Methan sele 33.6 89 0.0019 20.8 3.8 32 119-150 13-51 (74)
69 TIGR01524 ATPase-IIIB_Mg magne 33.3 3.7E+02 0.008 25.8 9.4 106 25-149 520-645 (867)
70 PRK15456 universal stress prot 33.3 48 0.001 23.4 2.8 27 125-151 88-115 (142)
71 TIGR03730 tungstate_WtpA tungs 33.2 56 0.0012 26.8 3.5 34 123-156 31-66 (273)
72 cd07403 MPP_TTHA0053 Thermus t 33.1 1.1E+02 0.0024 21.6 4.8 45 3-47 57-103 (129)
73 cd00562 NifX_NifB This CD repr 33.0 62 0.0014 21.4 3.2 25 130-154 50-74 (102)
74 PRK09453 phosphodiesterase; Pr 32.7 1.5E+02 0.0032 22.1 5.6 30 121-150 98-127 (182)
75 cd07401 MPP_TMEM62_N Homo sapi 32.4 79 0.0017 25.3 4.2 44 4-49 168-212 (256)
76 PF00076 RRM_1: RNA recognitio 32.1 91 0.002 18.5 3.7 48 89-137 6-55 (70)
77 KOG3325|consensus 32.0 63 0.0014 24.8 3.3 34 122-155 81-121 (183)
78 PRK13011 formyltetrahydrofolat 31.8 2.9E+02 0.0064 22.8 10.0 26 22-47 18-43 (286)
79 PF06871 TraH_2: TraH_2; Inte 31.8 49 0.0011 26.1 2.8 26 89-114 46-71 (206)
80 PTZ00170 D-ribulose-5-phosphat 31.7 66 0.0014 25.5 3.6 28 122-149 175-202 (228)
81 COG3562 KpsS Capsule polysacch 31.6 68 0.0015 27.8 3.8 42 2-48 270-314 (403)
82 TIGR01256 modA molybdenum ABC 31.5 66 0.0014 24.4 3.5 28 125-152 25-53 (216)
83 PRK05866 short chain dehydroge 30.9 71 0.0015 25.8 3.8 27 122-148 41-71 (293)
84 PF09358 UBA_e1_C: Ubiquitin-a 30.4 31 0.00067 25.0 1.4 25 89-113 39-63 (125)
85 TIGR01364 serC_1 phosphoserine 30.2 69 0.0015 26.9 3.7 52 95-155 39-96 (349)
86 PF01884 PcrB: PcrB family; I 29.9 48 0.0011 26.7 2.6 64 92-155 135-218 (230)
87 cd06398 PB1_Joka2 The PB1 doma 29.5 54 0.0012 22.5 2.4 24 86-109 13-41 (91)
88 PRK06935 2-deoxy-D-gluconate 3 29.3 73 0.0016 24.7 3.5 28 122-149 16-47 (258)
89 KOG1208|consensus 29.3 73 0.0016 26.7 3.6 34 118-151 32-69 (314)
90 PRK10677 modA molybdate transp 29.3 79 0.0017 25.3 3.8 28 127-155 61-89 (257)
91 PF02991 Atg8: Autophagy prote 29.2 44 0.00096 23.5 2.0 27 83-109 33-59 (104)
92 PTZ00422 glideosome-associated 29.0 73 0.0016 27.8 3.6 40 5-45 217-258 (394)
93 PRK14010 potassium-transportin 28.6 1.8E+02 0.004 27.1 6.4 96 25-149 446-546 (673)
94 PLN02780 ketoreductase/ oxidor 28.6 74 0.0016 26.3 3.5 28 121-148 53-84 (320)
95 TIGR00521 coaBC_dfp phosphopan 28.6 2.4E+02 0.0053 24.4 6.8 58 93-150 164-235 (390)
96 cd07393 MPP_DR1119 Deinococcus 28.5 1.3E+02 0.0028 23.6 4.8 36 4-45 167-203 (232)
97 PRK07985 oxidoreductase; Provi 27.7 80 0.0017 25.5 3.6 27 122-148 50-80 (294)
98 PF01995 DUF128: Domain of unk 27.2 1.6E+02 0.0036 23.8 5.2 54 92-145 156-220 (236)
99 TIGR03767 P_acnes_RR metalloph 27.1 1.2E+02 0.0026 27.4 4.7 44 5-48 341-393 (496)
100 KOG2733|consensus 27.1 37 0.00081 29.6 1.5 27 130-156 98-125 (423)
101 PRK13307 bifunctional formalde 26.8 84 0.0018 27.4 3.6 29 122-150 332-360 (391)
102 PRK15005 universal stress prot 26.7 85 0.0019 21.9 3.2 25 125-149 90-115 (144)
103 COG1809 (2R)-phospho-3-sulfola 26.6 1.8E+02 0.0038 23.8 5.1 69 22-107 59-130 (258)
104 PRK05355 3-phosphoserine/phosp 26.6 92 0.002 26.3 3.8 52 95-155 50-107 (360)
105 cd00852 NifB NifB belongs to a 26.5 88 0.0019 21.3 3.1 25 123-147 68-92 (106)
106 COG2805 PilT Tfp pilus assembl 26.3 52 0.0011 28.1 2.2 66 92-157 139-214 (353)
107 PF02568 ThiI: Thiamine biosyn 26.2 44 0.00096 26.2 1.7 14 137-150 104-117 (197)
108 PF00564 PB1: PB1 domain; Int 26.1 59 0.0013 20.9 2.1 38 89-128 18-59 (84)
109 PF02662 FlpD: Methyl-viologen 26.0 1.2E+02 0.0026 21.7 3.9 33 118-150 27-62 (124)
110 cd07388 MPP_Tt1561 Thermus the 26.0 44 0.00095 26.7 1.7 13 3-15 149-161 (224)
111 cd00839 MPP_PAPs purple acid p 25.9 99 0.0021 24.7 3.8 43 5-47 158-205 (294)
112 COG2384 Predicted SAM-dependen 25.7 2.1E+02 0.0047 23.1 5.5 54 89-143 48-108 (226)
113 COG1692 Calcineurin-like phosp 25.7 1.2E+02 0.0027 25.0 4.2 56 92-154 15-72 (266)
114 PRK05424 rplA 50S ribosomal pr 25.2 97 0.0021 24.8 3.5 26 121-149 72-97 (230)
115 PF08889 WbqC: WbqC-like prote 25.0 2.1E+02 0.0046 22.6 5.4 49 96-151 113-164 (219)
116 cd01078 NAD_bind_H4MPT_DH NADP 24.9 1.2E+02 0.0027 22.8 4.0 29 121-149 29-60 (194)
117 PF00072 Response_reg: Respons 24.9 2E+02 0.0044 18.6 6.6 57 89-157 53-109 (112)
118 PRK12367 short chain dehydroge 24.7 1.1E+02 0.0024 24.1 3.8 18 132-149 29-46 (245)
119 PF11543 UN_NPL4: Nuclear pore 24.5 55 0.0012 21.8 1.7 21 89-109 20-40 (80)
120 smart00764 Citrate_ly_lig Citr 24.4 2.5E+02 0.0055 21.5 5.6 24 92-115 92-115 (182)
121 cd01611 GABARAP Ubiquitin doma 24.3 82 0.0018 22.4 2.7 26 84-109 42-67 (112)
122 PF05036 SPOR: Sporulation rel 24.1 1.4E+02 0.0031 18.2 3.6 58 89-147 12-75 (76)
123 COG0036 Rpe Pentose-5-phosphat 23.9 1.3E+02 0.0027 24.3 3.9 29 122-150 171-199 (220)
124 PF06866 DUF1256: Protein of u 23.7 1.7E+02 0.0037 22.4 4.4 103 34-152 24-136 (163)
125 PRK12831 putative oxidoreducta 23.6 1.7E+02 0.0038 25.6 5.1 59 89-147 108-169 (464)
126 PRK05854 short chain dehydroge 23.6 1.2E+02 0.0025 24.8 3.8 18 132-149 29-46 (313)
127 PRK14057 epimerase; Provisiona 23.5 1.3E+02 0.0029 24.6 4.1 27 123-149 196-222 (254)
128 PF00070 Pyr_redox: Pyridine n 23.0 1.5E+02 0.0032 18.8 3.6 25 122-146 1-27 (80)
129 PLN02253 xanthoxin dehydrogena 23.0 1.1E+02 0.0024 24.0 3.5 27 122-148 19-49 (280)
130 PF01408 GFO_IDH_MocA: Oxidore 22.9 2.5E+02 0.0053 18.9 4.9 47 99-147 39-92 (120)
131 PF04028 DUF374: Domain of unk 22.9 2.3E+02 0.005 18.6 4.7 45 96-151 22-69 (74)
132 PRK06096 molybdenum transport 22.7 1.5E+02 0.0032 24.7 4.3 33 123-155 239-271 (284)
133 cd06406 PB1_P67 A PB1 domain i 22.7 98 0.0021 20.9 2.6 21 89-109 17-37 (80)
134 cd01789 Alp11_N Ubiquitin-like 22.6 1.1E+02 0.0025 20.2 3.0 21 89-109 19-39 (84)
135 TIGR00289 conserved hypothetic 22.6 1.9E+02 0.0042 23.0 4.8 47 97-151 48-95 (222)
136 COG0725 ModA ABC-type molybdat 22.6 1.1E+02 0.0024 24.9 3.4 29 128-156 64-93 (258)
137 PF07085 DRTGG: DRTGG domain; 22.5 1.6E+02 0.0034 20.0 3.8 28 118-147 19-46 (105)
138 TIGR00290 MJ0570_dom MJ0570-re 22.4 2.2E+02 0.0048 22.7 5.0 46 97-151 48-95 (223)
139 cd01137 PsaA Metal binding pro 22.4 51 0.0011 27.0 1.5 58 35-114 176-233 (287)
140 TIGR00262 trpA tryptophan synt 22.2 2.8E+02 0.006 22.4 5.7 19 131-149 210-228 (256)
141 PF13653 GDPD_2: Glycerophosph 22.1 1E+02 0.0022 16.8 2.1 19 131-149 10-28 (30)
142 cd00840 MPP_Mre11_N Mre11 nucl 22.1 79 0.0017 23.8 2.4 21 133-153 33-54 (223)
143 PF13241 NAD_binding_7: Putati 21.9 1E+02 0.0023 20.9 2.8 30 121-150 8-39 (103)
144 TIGR01235 pyruv_carbox pyruvat 21.9 4.2E+02 0.0092 26.5 7.7 40 25-64 627-666 (1143)
145 PRK06484 short chain dehydroge 21.7 1.1E+02 0.0024 26.6 3.5 29 121-149 269-301 (520)
146 PRK06128 oxidoreductase; Provi 21.7 1.3E+02 0.0028 24.2 3.7 27 122-148 56-86 (300)
147 PF14560 Ubiquitin_2: Ubiquiti 21.7 86 0.0019 20.7 2.2 21 89-109 20-40 (87)
148 PRK06841 short chain dehydroge 21.7 1.4E+02 0.0031 22.9 3.8 28 122-149 17-47 (255)
149 PF13277 YmdB: YmdB-like prote 21.6 1.6E+02 0.0035 24.2 4.1 54 93-153 13-68 (253)
150 PRK04148 hypothetical protein; 21.6 3.4E+02 0.0073 20.0 5.6 43 96-147 2-45 (134)
151 COG2070 Dioxygenases related t 21.4 2.2E+02 0.0048 24.1 5.2 75 25-114 116-191 (336)
152 TIGR01169 rplA_bact ribosomal 21.2 1.3E+02 0.0028 24.0 3.5 26 121-149 71-96 (227)
153 PF04456 DUF503: Protein of un 21.1 2.8E+02 0.006 18.8 4.8 43 89-131 11-63 (90)
154 PF02844 GARS_N: Phosphoribosy 21.1 2.4E+02 0.0052 19.7 4.5 18 132-149 53-70 (100)
155 TIGR03849 arch_ComA phosphosul 21.0 4.6E+02 0.0099 21.3 7.2 45 24-69 42-90 (237)
156 PLN02846 digalactosyldiacylgly 21.0 1.2E+02 0.0025 27.0 3.5 39 2-48 116-154 (462)
157 PTZ00380 microtubule-associate 21.0 1E+02 0.0022 22.4 2.6 26 84-109 41-67 (121)
158 COG1127 Ttg2A ABC-type transpo 20.7 1.1E+02 0.0023 25.3 3.0 92 25-128 117-221 (263)
159 PRK08883 ribulose-phosphate 3- 20.7 4.3E+02 0.0092 20.8 8.5 27 123-149 170-196 (220)
160 TIGR03679 arCOG00187 arCOG0018 20.7 1.6E+02 0.0035 23.1 3.9 49 97-152 46-97 (218)
161 PRK05581 ribulose-phosphate 3- 20.6 1.7E+02 0.0037 22.3 4.0 27 123-149 173-199 (220)
162 PF04967 HTH_10: HTH DNA bindi 20.5 93 0.002 19.2 2.0 16 87-102 18-33 (53)
163 PRK07831 short chain dehydroge 20.3 1.5E+02 0.0032 23.0 3.7 17 132-148 33-49 (262)
164 cd02152 OAT Ornithine acetyltr 20.2 1.9E+02 0.0041 25.3 4.5 25 55-80 84-108 (390)
165 TIGR03128 RuMP_HxlA 3-hexulose 20.2 1.6E+02 0.0035 22.3 3.8 29 122-150 160-188 (206)
No 1
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=100.00 E-value=9.1e-47 Score=305.04 Aligned_cols=150 Identities=32% Similarity=0.555 Sum_probs=137.2
Q ss_pred CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388 1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK 80 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~ 80 (159)
++|||||||||+||+|.++...+...+++++|+||||+|||+|||||++++ |+|++||+.|||++.+++.+.++|++|+
T Consensus 56 ~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~g~G~vg~ 134 (249)
T TIGR00486 56 LGADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSAHTNLDAHDG-GNNDALARALGLENPKEFEDYGLGRVGE 134 (249)
T ss_pred CCCCEEEEcCccccCCcccccCCCHHHHHHHHHHCCCeEEEeecchhcCCC-CHHHHHHHHcCCCccccccCCCceeEEE
Confidence 489999999999999987665554444499999999999999999999998 9999999999999988887678999999
Q ss_pred EccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhccC
Q psy2388 81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK 159 (159)
Q Consensus 81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a~ 159 (159)
+++|+|+++|++++++.|+++.+|+ ++.+++|+|||+|+|||++++++|.++|||+|||||++||++++|+
T Consensus 135 --------l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h~~~~A~ 206 (249)
T TIGR00486 135 --------FKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAHLAR 206 (249)
T ss_pred --------CCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCchHHHHHHH
Confidence 9889999999999999999999998 6667899999999999999999999999999999999999998873
No 2
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=100.00 E-value=1.5e-46 Score=302.27 Aligned_cols=149 Identities=30% Similarity=0.512 Sum_probs=132.4
Q ss_pred CCccEEEEcCCCCccCCCCCc-cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc------C
Q psy2388 1 MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK------N 73 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~~-~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~------~ 73 (159)
+||||||||||+||++.++.. .+++++++++|++|+|+||++|||||++++ |+|++||+.|||++.+++.+ .
T Consensus 52 ~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~~~~~~~ 130 (241)
T PF01784_consen 52 KGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAHTNLDAAPG-GVNDYLAKKLGLENIKPLDPSKSGEGY 130 (241)
T ss_dssp TT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEESHHHHHSTT-SHHHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred cCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEecccccccCc-CHHHHHHHHhCCCCccccccccccccc
Confidence 589999999999999986654 457899999999999999999999999999 99999999999999988864 3
Q ss_pred CeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCc
Q psy2388 74 NIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 74 ~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~ 152 (159)
++|++|+ +++|+|++||+++++++|+++.+|+ ++++++|+|||||+|||++++++|.+.|||+|||||++|
T Consensus 131 g~g~i~~--------l~~~~s~~el~~~vk~~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~ 202 (241)
T PF01784_consen 131 GLGRIGE--------LPEPMSLEELAERVKEKLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKY 202 (241)
T ss_dssp ECEEEEE--------EEEEEEHHHHHHHHHHHTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--H
T ss_pred eeeeEee--------cCCCCCHHHHHHHHHHHcCCCcEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcH
Confidence 6788888 9989999999999999999999999 588999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy2388 153 STKKNL 158 (159)
Q Consensus 153 ~~~~~a 158 (159)
|++++|
T Consensus 203 h~~~~a 208 (241)
T PF01784_consen 203 HDAQDA 208 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 3
>PRK10799 metal-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=291.20 Aligned_cols=149 Identities=42% Similarity=0.789 Sum_probs=134.1
Q ss_pred CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388 1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK 80 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~ 80 (159)
++|||||||||+||++.++...+++++++++|++++|+|||+|||||+++++|+|++||+.|||+..... .++|.+|+
T Consensus 55 ~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~--~~~~~~g~ 132 (247)
T PRK10799 55 LQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEI--EPLVPWGE 132 (247)
T ss_pred CCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCc--CCceeeEE
Confidence 4899999999999999766667788999999999999999999999999966999999999999875443 35777888
Q ss_pred EccccccccCCccCHHHHHHHHHhHhCCCcEEEcCC-CCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhccC
Q psy2388 81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDL-NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK 159 (159)
Q Consensus 81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~~-~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a~ 159 (159)
+++|+|+++|++++|+.|+++.+.+++. +++|+|||+|+|||++++++|.+.|||+|||||+|||++++|+
T Consensus 133 --------l~~~~s~~~l~~~vk~~l~~~~~~~~~~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~h~~~~A~ 204 (247)
T PRK10799 133 --------LTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAR 204 (247)
T ss_pred --------CCCCcCHHHHHHHHHHHhCCCeEEECCCCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCcchHHHHHHH
Confidence 9889999999999999999997666655 5789999999999999999999999999999999999999873
No 4
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.1e-40 Score=266.47 Aligned_cols=150 Identities=36% Similarity=0.573 Sum_probs=133.2
Q ss_pred CCccEEEEcCCCCccCCCC-CccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEE
Q psy2388 1 MNADAILVHHGYFWKGENS-NIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIG 79 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~-~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig 79 (159)
.+||+||+|||++|.+.+. ..++++++++++|++++|++|++|||||++++ |.|+++++.|++....+..+.++|++|
T Consensus 56 ~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~-g~N~a~~~~l~~~~~~~~~~~~~g~~g 134 (250)
T COG0327 56 LGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPE-GGNDALAAALLGAEELPPFGEGLGRVG 134 (250)
T ss_pred CCCCEEEEcCchhcCCCccccccchHHHHHHHHHhCCCeEEEcccccccccc-cccHHHHHHhcCcccccccccccceEE
Confidence 4799999999966666544 35778999999999999999999999999999 888888888777766655446789999
Q ss_pred EEccccccccCCccCHHHHHHHHHhHhCCCcEEEc-CCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388 80 KIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNL 158 (159)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~-~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a 158 (159)
+ +++++|+++|++++++.|+.+.++++ +.++.|+|||||+|||.+++.+|.++|+|+|||||++||+++.|
T Consensus 135 ~--------~~~~~~l~~l~~~i~~~l~~~~~~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~~~a 206 (250)
T COG0327 135 E--------LKEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTAHDA 206 (250)
T ss_pred E--------eCCCCCHHHHHHHHHHHcCCCCEEEccCccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHHHHH
Confidence 9 99999999999999999999999985 46889999999999999999999999999999999999999987
Q ss_pred C
Q psy2388 159 K 159 (159)
Q Consensus 159 ~ 159 (159)
+
T Consensus 207 ~ 207 (250)
T COG0327 207 R 207 (250)
T ss_pred H
Confidence 4
No 5
>KOG4131|consensus
Probab=99.97 E-value=1.9e-31 Score=211.04 Aligned_cols=144 Identities=22% Similarity=0.322 Sum_probs=123.8
Q ss_pred CCccEEEEcCCCCccCCCCCc-cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388 1 MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK------- 72 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~~-~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~------- 72 (159)
++|+.|+++||++|++.+++. ..++.+++.++++|||++||+||.+|+++. |+|+||++.++.+..+++.+
T Consensus 65 k~~e~IvAYHP~IFr~~krIt~~~~~e~~vi~~~~ngiavySPHtA~Daa~~-gVNdwls~gIN~~~~~p~~~t~~gp~~ 143 (272)
T KOG4131|consen 65 KNAESIVAYHPPIFRPLKRITKSYPQERKVIKAIANGIAVYSPHTAVDAAGG-GVNDWLSKGINANLSRPNDPTKNGPME 143 (272)
T ss_pred hCCceeEeecCccccchhhhcccchHHHHHHHHHhcCceeecchhhhccccc-chhHHHHHhhhhhhcCCccccccCCCc
Confidence 479999999999999987765 447889999999999999999999999998 99999999999655555443
Q ss_pred --CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEEc--C---CCCceeEEEEEecCchHHHHHHHhcCCcEE
Q psy2388 73 --NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG--D---LNKKIYEIGWCTGAAQNLLTDAINEGVTAY 145 (159)
Q Consensus 73 --~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~--~---~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ 145 (159)
.|+||+.+ +..++++.++++++|+ +++.+|+. . .+..|++||+|+|||+++++. .++|+|
T Consensus 144 ~~~G~gr~~e--------~~~~~~~~~~l~~ik~--~l~~v~val~~g~~~~~~i~~V~vcAgsg~svlk~---~~adly 210 (272)
T KOG4131|consen 144 ETIGYGREEE--------TKINLNVVEILKRIKR--GLSSVRVALAVGHTLESQIKKVAVCAGSGSSVLKG---VDADLY 210 (272)
T ss_pred ccccccceee--------ccCcccHHHHHHHHHh--cCCeEEEeeccCCccccceeEEEEeeccCcceecc---ccccEE
Confidence 36777777 7878999999999998 78888872 2 356899999999999999876 479999
Q ss_pred EEccCCchhhhcc
Q psy2388 146 ISGEISESTKKNL 158 (159)
Q Consensus 146 ITGe~k~~~~~~a 158 (159)
||||++||+.++|
T Consensus 211 ~TGEmSHH~vL~~ 223 (272)
T KOG4131|consen 211 ITGEMSHHDVLDA 223 (272)
T ss_pred EeccccHHHHHHH
Confidence 9999999999876
No 6
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=96.49 E-value=0.0092 Score=48.33 Aligned_cols=55 Identities=18% Similarity=0.360 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHhHhCCC--------cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 93 ITIKDLFHHITRKIGKK--------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~~--------~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
|++.|+.+.+.+.+... .+.+++.+++|+||++|-=.-.+.+++|.++|||++||
T Consensus 1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIit 63 (249)
T TIGR00486 1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEVKKVVVAVDASESVADEAVRLGADLIIT 63 (249)
T ss_pred CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCcccCEEEEEecCCHHHHHHHHHCCCCEEEE
Confidence 45677888887776532 46667778899999999999999999999999999997
No 7
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=95.66 E-value=0.035 Score=44.65 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=32.4
Q ss_pred cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 110 PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 110 ~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
.+.+|+++++|+||++|-=...+.+++|.+.|||++||
T Consensus 22 Gl~vg~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIIt 59 (241)
T PF01784_consen 22 GLQVGDPEQEVKKVLVALDATPEVIEEAIEKGADLIIT 59 (241)
T ss_dssp EEEES-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEE
T ss_pred ceEECcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 46778888999999999999999999999999999998
No 8
>PRK10799 metal-binding protein; Provisional
Probab=94.69 E-value=0.12 Score=41.70 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=40.9
Q ss_pred CHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 94 TIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 94 ~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
...|+.+.+.+.+.. ..+.++. .++|++|++|-=...+.+++|.++|||++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~wd~~Gl~v~~-~~~v~~I~~alD~t~~vi~~A~~~~~dlIit 62 (247)
T PRK10799 2 KNTELEQLINEKLNSAAISDYAPNGLQVEG-RETVQKIVTGVTASQALLDEAVRLQADAVIV 62 (247)
T ss_pred cHHHHHHHHHhhcCHhhhccCCCceeEeCC-cccccEEEEEeCCCHHHHHHHHHCCCCEEEE
Confidence 345666666666653 2344443 4689999999999999999999999999997
No 9
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=1.1 Score=36.35 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=34.3
Q ss_pred CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 109 KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 109 ~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
..+.+++++++|+||+++-=.-.+.+++|.+.+||++|+
T Consensus 25 ~GLqv~~~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~ 63 (250)
T COG0327 25 NGLQVGGPLEEVKKVAVALDATLAVLDEAIELGADLLIV 63 (250)
T ss_pred ceEEeCCCCcccceEEEEeeCCHHHHHHHHHCCCCEEEE
Confidence 356666668899999999999999999999999999987
No 10
>PRK00124 hypothetical protein; Validated
Probab=82.50 E-value=5.6 Score=30.11 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=42.5
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEc--CC------CCceeEEEEEecCch--HHHHHHHhcCCcEEEEccCC
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIG--DL------NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~--~~------~~~i~rVai~~Gsg~--~~i~~a~~~~~D~~ITGe~k 151 (159)
.++..+.+.++.+.++++.+.+. +. ..-++.|-|-+|.-. ..|-+..+.| |+.||.|+.
T Consensus 9 ACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g-DiVIT~Di~ 77 (151)
T PRK00124 9 ACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKG-DIVITQDYG 77 (151)
T ss_pred CCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCC-CEEEeCCHH
Confidence 56799999999999999987764 32 123677777666654 4455555666 999999974
No 11
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.96 E-value=6.6 Score=29.69 Aligned_cols=59 Identities=14% Similarity=0.303 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEcCC------CCceeEEEEEecCch--HHHHHHHhcCCcEEEEccCC
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIGDL------NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~~~------~~~i~rVai~~Gsg~--~~i~~a~~~~~D~~ITGe~k 151 (159)
.+++.+++.++.+.+|++++.+.+. ...|+.|-+-+|--. +.|-+-.+.| |+.||-|+.
T Consensus 10 ACPVk~~i~r~A~r~~~~v~~Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g-DlVVT~Di~ 76 (150)
T COG1671 10 ACPVKDEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG-DLVVTADIP 76 (150)
T ss_pred CCchHHHHHHHHHHhCCeEEEEeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC-CEEEECchH
Confidence 5779999999999999998887321 245777777777654 4454544555 999999975
No 12
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=78.47 E-value=11 Score=32.36 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=23.5
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEccCCch
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGEISES 153 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~ 153 (159)
.+.+.+=-|..-|.+|.+.|||+.|||-....
T Consensus 141 ~~~a~aylGa~pI~~AL~~GADIVI~GR~~D~ 172 (362)
T PF07287_consen 141 IVSANAYLGAEPIVEALEAGADIVITGRVADP 172 (362)
T ss_pred cceEEEecChHHHHHHHHcCCCEEEeCcccch
Confidence 34444445666688999999999999976543
No 13
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=73.39 E-value=15 Score=32.40 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccc----c--------------CCee--------e
Q psy2388 24 IKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFS----K--------------NNIG--------W 77 (159)
Q Consensus 24 ~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~----~--------------~~~g--------~ 77 (159)
...+-+++..+|||.||+.-+.|---.+.-.+-.-++..|......+. | ..+| +
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDm 178 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDM 178 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecc
Confidence 467889999999999999876665433333445556777775332211 1 0111 1
Q ss_pred EEEEccccccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEE
Q psy2388 78 IGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAY 145 (159)
Q Consensus 78 ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ 145 (159)
-|. + .|....||++.+|+.++++...... . .+|-..--.-.|.++|+|.+
T Consensus 179 aGl--------l-tP~~ayelVk~iK~~~~~pv~lHtH--~-------TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 179 AGL--------L-TPYEAYELVKAIKKELPVPVELHTH--A-------TSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred ccc--------C-ChHHHHHHHHHHHHhcCCeeEEecc--c-------ccchHHHHHHHHHHhCcchh
Confidence 233 3 3666788888888888866544321 1 12333322334567888876
No 14
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.45 E-value=59 Score=25.93 Aligned_cols=43 Identities=9% Similarity=-0.076 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCccEEEecc-CCCCCCCCCHHHHHHHHcCCcc
Q psy2388 24 IKKKRLEQLIINKINLYAYHL-PLDMHPKLGNNAQLAKILNFSC 66 (159)
Q Consensus 24 ~~~~~~~~l~~~~I~vy~~Ht-~lD~~~~~G~n~~La~~Lgl~~ 66 (159)
...+.++.+.+.|..-...|+ |+++..+..--...++.+|++.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~ 132 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKP 132 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 356778999999999999995 5664322122334556777653
No 15
>PF13470 PIN_3: PIN domain
Probab=68.44 E-value=5.3 Score=27.72 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCcEEEEccCC
Q psy2388 132 NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe~k 151 (159)
-++..|...+||.+||||.|
T Consensus 100 ~~la~A~~~~ad~iVT~D~k 119 (119)
T PF13470_consen 100 HVLAAAIAAKADYIVTGDKK 119 (119)
T ss_pred HHHHHHHHcCCCEEEeCCCC
Confidence 46777788899999999975
No 16
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=68.36 E-value=11 Score=30.09 Aligned_cols=46 Identities=11% Similarity=0.249 Sum_probs=27.8
Q ss_pred cEEEEcCCCCccCCCCC---cc-C--hHHHHHHHHHhcCc-cEEEeccCCCCC
Q psy2388 4 DAILVHHGYFWKGENSN---IV-G--IKKKRLEQLIINKI-NLYAYHLPLDMH 49 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~---~~-~--~~~~~~~~l~~~~I-~vy~~Ht~lD~~ 49 (159)
-+|++|||++-...... .. . ...+....+.++++ .+++=|+..+..
T Consensus 168 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~ 220 (262)
T cd07395 168 VIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAG 220 (262)
T ss_pred EEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCc
Confidence 48999999975332111 11 1 22455555667888 567778887654
No 17
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=66.85 E-value=14 Score=26.25 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=25.3
Q ss_pred EEEEcCCCCccCCCCCc-cChHHHHHHHHHhcCccE-EEeccCCCC
Q psy2388 5 AILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINL-YAYHLPLDM 48 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~-~~~~~~~~~~l~~~~I~v-y~~Ht~lD~ 48 (159)
++++|||+.+....... .....+....+.+.++.+ .+=|+....
T Consensus 81 iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~ 126 (144)
T cd07400 81 IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPY 126 (144)
T ss_pred EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEECCCCCcC
Confidence 68999999886532111 112345666666666654 344555443
No 18
>KOG3111|consensus
Probab=66.75 E-value=37 Score=27.05 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHhcCccEEEeccCC
Q psy2388 23 GIKKKRLEQLIINKINLYAYHLPL 46 (159)
Q Consensus 23 ~~~~~~~~~l~~~~I~vy~~Ht~l 46 (159)
..+.+.+..+.+.+.++|++|---
T Consensus 74 ~~Peq~V~~~a~agas~~tfH~E~ 97 (224)
T KOG3111|consen 74 ENPEQWVDQMAKAGASLFTFHYEA 97 (224)
T ss_pred cCHHHHHHHHHhcCcceEEEEEee
Confidence 347899999999999999999654
No 19
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=66.50 E-value=10 Score=27.93 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=23.5
Q ss_pred cEEEEcCCCCccCCCCC----ccChH-HH-HHHHHHhcCccEEEe-ccCCC
Q psy2388 4 DAILVHHGYFWKGENSN----IVGIK-KK-RLEQLIINKINLYAY-HLPLD 47 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~----~~~~~-~~-~~~~l~~~~I~vy~~-Ht~lD 47 (159)
.+|+||||++-...... ..... .+ ..+.+.+.++.++.+ |+.-.
T Consensus 99 ~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~ 149 (166)
T cd07404 99 TVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFN 149 (166)
T ss_pred EEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCcccc
Confidence 47999999987543221 11111 12 333445567776555 66544
No 20
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=65.78 E-value=18 Score=26.47 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHhHhCCCcEEEcCC------CCceeEEEEEecCch--HHHHHHHhcCCcEEEEccCC
Q psy2388 100 HHITRKIGKKPIVIGDL------NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 100 ~~lk~~l~~~~i~~~~~------~~~i~rVai~~Gsg~--~~i~~a~~~~~D~~ITGe~k 151 (159)
-++.+.++++++.+.+. .+.++.|-|-+|.-+ ..|-+..+.| |+.||.|+.
T Consensus 3 ~~~a~r~~i~vi~Van~~h~~~~~~~~~~i~Vd~g~DaaD~~I~~~~~~g-DiVITqDig 61 (130)
T PF02639_consen 3 IRVAKRYGIPVIFVANYSHRLPRSPYVEMIVVDSGFDAADFYIVNHAKPG-DIVITQDIG 61 (130)
T ss_pred HHHHHHHCCEEEEEeCCCccCCCCCCeEEEEECCCCChHHHHHHHcCCCC-CEEEECCHH
Confidence 35677889998888431 245777777777765 3343434444 999999974
No 21
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=63.44 E-value=21 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
+.+|.+|.+.++.+|.+++...|+++
T Consensus 11 ~RRf~~~~~pt~~~L~~kl~~Lf~lp 36 (82)
T cd06397 11 TRRIVFPDIPTWEALASKLENLYNLP 36 (82)
T ss_pred eEEEecCCCccHHHHHHHHHHHhCCC
Confidence 44666888889999999999999998
No 22
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=63.03 E-value=76 Score=25.29 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=25.2
Q ss_pred eEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
-+|.|=+|-..+-++.+.+.|||+||.|-
T Consensus 172 ~~IeVDGGI~~eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 172 IRLEIDGGVKADNIGAIAAAGADTFVAGS 200 (223)
T ss_pred eeEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 35788888888999999999999999994
No 23
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=61.31 E-value=29 Score=22.66 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=27.7
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEE
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWC 126 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~ 126 (159)
+| -|++||.+-..++||...-++ .....+|.-|.++
T Consensus 24 lP--~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~I 60 (69)
T PF11834_consen 24 LP--DSLEELLKIASEKFGFSATKVLNEDGAEIDDIDVI 60 (69)
T ss_pred cC--ccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEEE
Confidence 65 699999999999999876665 4445667777664
No 24
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=61.23 E-value=39 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.083 Sum_probs=22.3
Q ss_pred eEEEEEecCc-------hHHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAA-------QNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg-------~~~i~~a~~~~~D~~ITGe~ 150 (159)
.||+++=|.+ ..+-..|.+.++|++|.|=.
T Consensus 82 ~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHT 118 (172)
T COG0622 82 VKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHT 118 (172)
T ss_pred EEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCC
Confidence 5899999943 24445567789999999954
No 25
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=59.45 E-value=16 Score=29.42 Aligned_cols=45 Identities=11% Similarity=-0.068 Sum_probs=24.1
Q ss_pred EEEEcCCCCccCCCCCccCh-HHHHHHHHHh-cCc-cEEEeccCCCCC
Q psy2388 5 AILVHHGYFWKGENSNIVGI-KKKRLEQLII-NKI-NLYAYHLPLDMH 49 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~~~~-~~~~~~~l~~-~~I-~vy~~Ht~lD~~ 49 (159)
+|++|||++-........-+ ..+....+.+ +++ .+++=|+..+..
T Consensus 183 iV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~ 230 (267)
T cd07396 183 IIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGY 230 (267)
T ss_pred EEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCc
Confidence 78999997543321111111 2344444445 355 467778888864
No 26
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=55.47 E-value=43 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=23.5
Q ss_pred ccccccCC--ccCHHHHHHHHHhHhCCCcEEE
Q psy2388 84 LKRYNFKK--IITIKDLFHHITRKIGKKPIVI 113 (159)
Q Consensus 84 ~~~~~l~~--~~~~~~l~~~lk~~l~~~~i~~ 113 (159)
+.+|.++. ..++.+|.+.+++.|+++.+.+
T Consensus 11 ~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~l 42 (81)
T cd06396 11 SQSFLVSDSENTTWASVEAMVKVSFGLNDIQI 42 (81)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHhCCCccee
Confidence 34566776 6799999999999999985444
No 27
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=55.00 E-value=12 Score=24.79 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=15.4
Q ss_pred hHHHHHHHhcCCcEEEEccCCchh
Q psy2388 131 QNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 131 ~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
..+.+.+.+.|||++|+|.+....
T Consensus 43 ~~~~~~l~~~~v~~li~~~iG~~~ 66 (94)
T PF02579_consen 43 DKIAKFLAEEGVDVLICGGIGEGA 66 (94)
T ss_dssp THHHHHHHHTTESEEEESCSCHHH
T ss_pred hhHHHHHHHcCCCEEEEeCCCHHH
Confidence 355555556777777777776554
No 28
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=54.44 E-value=32 Score=25.24 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=9.8
Q ss_pred CccEEEEcCCCCc
Q psy2388 2 NADAILVHHGYFW 14 (159)
Q Consensus 2 ~adlIItHHp~~f 14 (159)
+.++++||||++-
T Consensus 124 ~~~ilv~H~pp~~ 136 (188)
T cd07392 124 KNLILVTHAPPYG 136 (188)
T ss_pred CCeEEEECCCCcC
Confidence 3578899999853
No 29
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=54.21 E-value=20 Score=28.59 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=23.6
Q ss_pred cEEEEcCCCCccCCCCCccC-hHHHHHHHHHhcCcc-EEEeccCCCC
Q psy2388 4 DAILVHHGYFWKGENSNIVG-IKKKRLEQLIINKIN-LYAYHLPLDM 48 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~~~~-~~~~~~~~l~~~~I~-vy~~Ht~lD~ 48 (159)
-+|++|||++-... ..... ...+....+.++++. +++=|+....
T Consensus 169 ~iv~~H~P~~~~~~-~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~ 214 (277)
T cd07378 169 KIVVGHHPIYSSGE-HGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQ 214 (277)
T ss_pred EEEEeCccceeCCC-CCCcHHHHHHHHHHHHHcCCCEEEeCCcccce
Confidence 37899999753321 11111 223444555567765 4566765543
No 30
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=52.78 E-value=14 Score=25.73 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
-++..|...+||++||||
T Consensus 91 ~~l~~A~~~~ad~iVT~D 108 (114)
T TIGR00305 91 KFLNTAYASKANALITGD 108 (114)
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 346667788999999999
No 31
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=52.32 E-value=43 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccC---CeeeEEEEccccccccCCccCHHHHHHH
Q psy2388 25 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKN---NIGWIGKIINLKRYNFKKIITIKDLFHH 101 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~---~~g~ig~~~~~~~~~l~~~~~~~~l~~~ 101 (159)
.++-++.|+++||+||+-=--. |-+ ++|+...+..|....+..+.. ..-.+ ++ + .++.++|.++
T Consensus 105 R~qDVeeLL~aGIdV~TTlNvq--HlE-Slnd~V~~iTgv~vrEtVPD~~l~~Adev-~l-------V--Di~Pe~L~~R 171 (211)
T PF02702_consen 105 RYQDVEELLDAGIDVYTTLNVQ--HLE-SLNDVVEQITGVRVRETVPDSVLDRADEV-EL-------V--DITPEELLER 171 (211)
T ss_dssp HHHHHHHHHHTT-EEEEEEEGG--GBG-GGHHHHHHHHS----S-B-HHHHHT-SCE-EE-------B-----HHHHHHH
T ss_pred cHHhHHHHHHCCCeEEEeeeHH--Hhh-hhHHHHHHHhCCeeeeeCCHHHHhhcCeE-EE-------e--cCCHHHHHHH
Confidence 4688999999999999864333 345 899999999998866543310 11112 21 2 2567999999
Q ss_pred HHh
Q psy2388 102 ITR 104 (159)
Q Consensus 102 lk~ 104 (159)
+++
T Consensus 172 L~~ 174 (211)
T PF02702_consen 172 LKE 174 (211)
T ss_dssp HHT
T ss_pred HHc
Confidence 885
No 32
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=51.86 E-value=52 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.2
Q ss_pred cccCCccCHHHHHHHHHhHhCCC
Q psy2388 87 YNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 87 ~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
+.++..+|+++|.++|+++|+.+
T Consensus 15 ~~~~~~~s~~dL~~~i~~~~~~~ 37 (81)
T smart00666 15 LSVPRDISFEDLRSKVAKRFGLD 37 (81)
T ss_pred EEECCCCCHHHHHHHHHHHhCCC
Confidence 44787899999999999999985
No 33
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.15 E-value=38 Score=27.10 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHH--HHHHHhcCCcEEEEccCCc
Q psy2388 96 KDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNL--LTDAINEGVTAYISGEISE 152 (159)
Q Consensus 96 ~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~--i~~a~~~~~D~~ITGe~k~ 152 (159)
.|++.++-++||++.+|= ..++ |+...+ +-.+.++|+|+-||-|..+
T Consensus 80 GEliA~~l~kfG~~~IRG-Ss~K---------gg~~Alr~l~k~Lk~G~~i~itpDgPk 128 (214)
T COG2121 80 GELIARLLEKFGLRVIRG-SSNK---------GGISALRALLKALKQGKSIAITPDGPK 128 (214)
T ss_pred HHHHHHHHHHcCceEEec-cCCc---------chHHHHHHHHHHHhCCCcEEEcCCCCC
Confidence 789999999999998884 2222 444433 3345789999999999876
No 34
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=49.58 E-value=34 Score=26.63 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=25.5
Q ss_pred EEEEcCCCCccCCCCCcc------ChHHHHHHHHHh-c-Ccc-EEEeccCCCCC
Q psy2388 5 AILVHHGYFWKGENSNIV------GIKKKRLEQLII-N-KIN-LYAYHLPLDMH 49 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~~------~~~~~~~~~l~~-~-~I~-vy~~Ht~lD~~ 49 (159)
+|++|||+.-........ ....+.+..+++ + ++. +++=|...+..
T Consensus 110 iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~ 163 (214)
T cd07399 110 ILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGR 163 (214)
T ss_pred EEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCce
Confidence 789999976433211101 123455656665 4 576 46768877754
No 35
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=49.18 E-value=18 Score=27.11 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.6
Q ss_pred hHHHHHHHhcCCcEEEEccC
Q psy2388 131 QNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 131 ~~~i~~a~~~~~D~~ITGe~ 150 (159)
..++..|.+.+||++||||-
T Consensus 94 n~~L~~A~~~kA~~lvTgD~ 113 (142)
T COG1569 94 NKLLALAYESKADYLVTGDQ 113 (142)
T ss_pred HHHHHHHHhccCCEEEEcch
Confidence 36888899999999999995
No 36
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.00 E-value=27 Score=25.94 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHhCCCc-EEEcCC---CCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCc
Q psy2388 95 IKDLFHHITRKIGKKP-IVIGDL---NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 95 ~~~l~~~lk~~l~~~~-i~~~~~---~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~ 152 (159)
+..+.+.+++.|.-.. .++.+. ...+.+..-..-+++-..+.|.+.|||..++|.+.-
T Consensus 30 L~~~~~~lr~~L~~~G~y~vVd~~~~~a~i~~~~~l~~C~gC~~~~Ar~~GAd~~lvG~VqK 91 (140)
T PF11684_consen 30 LAALTDQLREALAESGRYRVVDLAPVAAEIAAAQNLRKCNGCEARIARELGADYVLVGEVQK 91 (140)
T ss_pred HHHHHHHHHHHHHhcCCeEEecCchhHHHhhccCCcccCCCHHHHHHHHcCCCEEEEEEEec
Confidence 3556666666666554 555332 234444333222233335556778999999998753
No 37
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=48.58 E-value=24 Score=28.70 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=35.5
Q ss_pred HHHHHhHhCCCcEEE--cCC-C-----Ccee----EEEEEecCc---hHHHHHHHhcCCcEEEEccCCchhh
Q psy2388 99 FHHITRKIGKKPIVI--GDL-N-----KKIY----EIGWCTGAA---QNLLTDAINEGVTAYISGEISESTK 155 (159)
Q Consensus 99 ~~~lk~~l~~~~i~~--~~~-~-----~~i~----rVai~~Gsg---~~~i~~a~~~~~D~~ITGe~k~~~~ 155 (159)
.....+.||.+.+.+ +.. . +.|+ ..-+.-|+| ...-++..++|||+.+||++-|.+.
T Consensus 156 y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 156 YALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred HHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 344556888886655 321 1 1222 224455666 3556666778999999999988664
No 38
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=48.53 E-value=97 Score=28.54 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccc
Q psy2388 24 IKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCT 67 (159)
Q Consensus 24 ~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~ 67 (159)
....-++.+.+|||.+++.=+.|--.++.-..-..++..|....
T Consensus 97 vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~ 140 (596)
T PRK14042 97 VVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQ 140 (596)
T ss_pred HHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEE
Confidence 34668888999999999988877655443445666777776543
No 39
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=47.67 E-value=1.6e+02 Score=24.29 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHhcCccEEEeccCCCC
Q psy2388 22 VGIKKKRLEQLIINKINLYAYHLPLDM 48 (159)
Q Consensus 22 ~~~~~~~~~~l~~~~I~vy~~Ht~lD~ 48 (159)
.|...+.-..|-++|+++....+..+.
T Consensus 17 pGIVa~Vt~~La~~g~NI~d~s~~~~~ 43 (286)
T PRK06027 17 PGIVAAVSNFLYEHGGNIVDADQFVDP 43 (286)
T ss_pred CcHHHHHHHHHHHCCCCEEEceeEEcC
Confidence 456789999999999999988887753
No 40
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=46.55 E-value=28 Score=28.17 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=24.6
Q ss_pred EEEEcCCCCccCCCCCccChHHHHHHHHHhcC--c-cEEEeccCCCCC
Q psy2388 5 AILVHHGYFWKGENSNIVGIKKKRLEQLIINK--I-NLYAYHLPLDMH 49 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~--I-~vy~~Ht~lD~~ 49 (159)
+|+.|||+....... ......+....+.+.. | .+++=||..|.-
T Consensus 217 ~I~~HiPp~~~~~~~-~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~ 263 (296)
T cd00842 217 WIIGHIPPGVNSYDT-LENWSERYLQIINRYSDTIAGQFFGHTHRDEF 263 (296)
T ss_pred EEEeccCCCCccccc-chHHHHHHHHHHHHHHHhhheeeecccccceE
Confidence 588899886643211 1122333344444443 4 478889888854
No 41
>PRK06720 hypothetical protein; Provisional
Probab=46.42 E-value=28 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
++++++|+++ .+.....+.|+++++++
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 5777777654 55555667899999987
No 42
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=45.56 E-value=23 Score=23.76 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.6
Q ss_pred ccccCCccCHHHHHHHHHhHhCCC
Q psy2388 86 RYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 86 ~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
+|.++.+.++.+|.+.|+++|+..
T Consensus 13 r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 13 RFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC
Confidence 455887889999999999999974
No 43
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=45.49 E-value=46 Score=21.28 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.0
Q ss_pred cC-CccCHHHHHHHHHhHhCCC--cEEE
Q psy2388 89 FK-KIITIKDLFHHITRKIGKK--PIVI 113 (159)
Q Consensus 89 l~-~~~~~~~l~~~lk~~l~~~--~i~~ 113 (159)
++ ..+|+++|.++|.++|+.+ .+.+
T Consensus 16 ~~~~~~s~~~L~~~i~~~~~~~~~~~~l 43 (81)
T cd05992 16 VVSRSISFEDLRSKIAEKFGLDAVSFKL 43 (81)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCCcEEE
Confidence 66 6789999999999999986 5444
No 44
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=45.44 E-value=1.1e+02 Score=28.91 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHHHHHHHh
Q psy2388 25 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITR 104 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~ 104 (159)
-.+.+..|.+.||.+.=. -=|.. .....+|+.||++++.. + .+|+. =-+.++++++
T Consensus 542 a~~aI~~L~~~Gi~~~mL--TGDn~---~~A~~iA~~lGId~v~A----------e-------llPed--K~~~V~~l~~ 597 (713)
T COG2217 542 AKEAIAALKALGIKVVML--TGDNR---RTAEAIAKELGIDEVRA----------E-------LLPED--KAEIVRELQA 597 (713)
T ss_pred HHHHHHHHHHCCCeEEEE--cCCCH---HHHHHHHHHcChHhhec----------c-------CCcHH--HHHHHHHHHh
Confidence 468899999999994322 22432 57889999999865432 2 04432 3455666663
Q ss_pred HhCCCcEEEcCC--CCc---eeEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 105 KIGKKPIVIGDL--NKK---IYEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 105 ~l~~~~i~~~~~--~~~---i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
. |.++..+||+ |.+ --.|+|.-|+|.+.-.++ +|+.+..|
T Consensus 598 ~-g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~ea----ADvvL~~~ 642 (713)
T COG2217 598 E-GRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEA----ADVVLMRD 642 (713)
T ss_pred c-CCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHh----CCEEEecC
Confidence 3 4556667875 333 357999999998876555 79887765
No 45
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=45.30 E-value=33 Score=22.46 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=25.7
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccCCchhhhc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEISESTKKN 157 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~ 157 (159)
+.||.+-|....+...+.|+.+|.+....-.+++.
T Consensus 56 ~li~~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~ 90 (94)
T PF02579_consen 56 VLICGGIGEGAFRALKEAGIKVYQGAGGDIEEALE 90 (94)
T ss_dssp EEEESCSCHHHHHHHHHTTSEEEESTSSBHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHCCCEEEEcCCCCHHHHHH
Confidence 45666788888888888999999986555555443
No 46
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=44.21 E-value=45 Score=22.83 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.4
Q ss_pred cCCccCHHHHHHHHHhHhCCC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~ 109 (159)
+|..+++++|.++|+++|+..
T Consensus 18 v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 18 IGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred cCCCCCHHHHHHHHHHHhCCC
Confidence 788899999999999999985
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=44.20 E-value=33 Score=22.94 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=14.2
Q ss_pred chHHHHHHHhcCCcEEEEccCCchh
Q psy2388 130 AQNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
+....+...+.+||++|+|.+..+.
T Consensus 52 ~~~~~~~l~~~~v~~vi~~~iG~~~ 76 (103)
T cd00851 52 GGKAAEFLADEGVDVVIVGGIGPRA 76 (103)
T ss_pred chHHHHHHHHcCCCEEEeCCCCcCH
Confidence 3444544555667777666665443
No 48
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=43.28 E-value=83 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=13.8
Q ss_pred chHHHHHHHhcCCcEEEEc
Q psy2388 130 AQNLLTDAINEGVTAYISG 148 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~ITG 148 (159)
|..+.+.+.+.|++|.+.+
T Consensus 217 G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 217 GYALARAAARRGADVTLVS 235 (399)
T ss_pred HHHHHHHHHHCCCEEEEeC
Confidence 3466777788999997653
No 49
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.11 E-value=29 Score=25.24 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=32.4
Q ss_pred HHHhHhCC-CcEEEcC-CCCceeEEEEE--------ecCchHHHHHHHhcCCcEEEEccCCchh
Q psy2388 101 HITRKIGK-KPIVIGD-LNKKIYEIGWC--------TGAAQNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 101 ~lk~~l~~-~~i~~~~-~~~~i~rVai~--------~Gsg~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
++.+.|+. +...+.+ .+..|..|=+. .|.|....+.+.++|+|++|++.+....
T Consensus 15 ~vs~hFgrap~F~Ivd~e~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a 78 (121)
T COG1433 15 KVSPHFGRAPYFTIVDVEDGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVDVVIASNIGPNA 78 (121)
T ss_pred cccCCccCCceEEEEEecCCcEEEEEEeecccccccCcchHHHHHHHHHcCCCEEEECccCHHH
Confidence 45556664 3333332 23445554443 3445566777788999999999887654
No 50
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=43.01 E-value=38 Score=27.17 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.8
Q ss_pred eEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
-+|||.+|=..+-++.....|+|+||-|-
T Consensus 165 ~~vAVaGGI~~~~i~~~~~~~~~ivIvGr 193 (217)
T COG0269 165 AKVAVAGGITPEDIPLFKGIGADIVIVGR 193 (217)
T ss_pred ceEEEecCCCHHHHHHHhcCCCCEEEECc
Confidence 47999999999999999999999998874
No 51
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=42.45 E-value=65 Score=24.89 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=35.5
Q ss_pred CccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEec-cCCCCCCCCCHHHHHHHHcCCc
Q psy2388 2 NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYH-LPLDMHPKLGNNAQLAKILNFS 65 (159)
Q Consensus 2 ~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~H-t~lD~~~~~G~n~~La~~Lgl~ 65 (159)
++|+||.-.-. ...++....+.++..+++|-.+.++| +..+.-++ ..++.+++|-.
T Consensus 52 ~~Dvvv~~~~~-----~~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~---~~~~~~l~Gg~ 108 (217)
T PF06283_consen 52 GYDVVVFYNTG-----GDELTDEQRAALRDYVENGGGLVGLHGAATDSFPD---WPEYNELLGGY 108 (217)
T ss_dssp T-SEEEEE-SS-----CCGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT----HHHHHHHS--
T ss_pred CCCEEEEECCC-----CCcCCHHHHHHHHHHHHcCCCEEEEcccccccchh---HHHHHHeeCcc
Confidence 46666644322 11134456799999999999999999 77776543 78888899964
No 52
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=41.51 E-value=43 Score=22.47 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.7
Q ss_pred cCCccCHHHHHHHHHhHhCCCc-EEE
Q psy2388 89 FKKIITIKDLFHHITRKIGKKP-IVI 113 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~-i~~ 113 (159)
++.|+.++|+.+++++.||-+. +.|
T Consensus 16 f~RPvkf~dl~~kv~~afGq~mdl~y 41 (79)
T cd06405 16 FPRPVKFKDLQQKVTTAFGQPMDLHY 41 (79)
T ss_pred cCCCccHHHHHHHHHHHhCCeeeEEE
Confidence 8999999999999999999773 444
No 53
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=39.96 E-value=43 Score=22.77 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=16.5
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
|-+|+|-|........+.|+.+|.+.+
T Consensus 64 vvi~~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 64 ILYCAAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred EEEEhhcChhHHHHHHHcCCEEEEcCC
Confidence 455666666666666666777765544
No 54
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=39.66 E-value=41 Score=29.99 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=40.6
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEEcCC----CCceeEEEEEecCch-----HHHHHHHhcCCcEEEEccC
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVIGDL----NKKIYEIGWCTGAAQ-----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~~~~----~~~i~rVai~~Gsg~-----~~i~~a~~~~~D~~ITGe~ 150 (159)
+..|.+.+.|..-+++.+........+. ......--+++-|-. ..+..++...+.|+||||.
T Consensus 103 l~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GES 173 (464)
T COG2204 103 LEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGES 173 (464)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 5679999999999999998654332111 111122333444443 5677778889999999996
No 55
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=38.82 E-value=51 Score=25.42 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=25.4
Q ss_pred cEEEEcCCCCccCCCC---CccChHHHHHHHHHhc-Ccc-EEEeccCCCCC
Q psy2388 4 DAILVHHGYFWKGENS---NIVGIKKKRLEQLIIN-KIN-LYAYHLPLDMH 49 (159)
Q Consensus 4 dlIItHHp~~f~~~~~---~~~~~~~~~~~~l~~~-~I~-vy~~Ht~lD~~ 49 (159)
-++++|||++..+... .......+..+.+.+. ++. +++=|+..+..
T Consensus 146 ~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~ 196 (240)
T cd07402 146 TLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPID 196 (240)
T ss_pred EEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHH
Confidence 4789999986543211 0011133444555555 665 46888887643
No 56
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.55 E-value=90 Score=25.90 Aligned_cols=26 Identities=15% Similarity=-0.084 Sum_probs=19.4
Q ss_pred cChHHHHHHHHHhcCccEEEeccCCC
Q psy2388 22 VGIKKKRLEQLIINKINLYAYHLPLD 47 (159)
Q Consensus 22 ~~~~~~~~~~l~~~~I~vy~~Ht~lD 47 (159)
.|...+.-..|.++|+++--.....|
T Consensus 20 ~GIVA~Vs~~Lae~g~NI~disq~~d 45 (289)
T PRK13010 20 PGIVAAVSGFLAEKGCYIVELTQFDD 45 (289)
T ss_pred CCcHHHHHHHHHHCCCCEEecccccc
Confidence 45678888999999999976554434
No 57
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=38.10 E-value=2.1e+02 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.6
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISG 148 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITG 148 (159)
|.|=+|-..+-+.++.+.|||+|+.|
T Consensus 172 IeVDGGI~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 172 IEVDGSCNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 55556667788999999999999998
No 58
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=37.18 E-value=2.4e+02 Score=23.27 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=44.9
Q ss_pred cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCC-ccCHHHHHH
Q psy2388 22 VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKK-IITIKDLFH 100 (159)
Q Consensus 22 ~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~-~~~~~~l~~ 100 (159)
.|...+.-..|.++|+++--.....|...+ .|. +=...+ +++ +.++++|.+
T Consensus 11 ~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~-----------------~F~---mr~~v~--------~~~~~~~~~~l~~ 62 (280)
T TIGR00655 11 KGLVAAISTFIAKHGANIISNDQHTDPETG-----------------RFF---MRVEFQ--------LEGFRLEESSLLA 62 (280)
T ss_pred CChHHHHHHHHHHCCCCEEeeeEEEcCCCC-----------------eEE---EEEEEE--------eCCCCCCHHHHHH
Confidence 456778888888888888766655552111 110 101123 554 367777776
Q ss_pred HHHh----HhCCCcEEEcCCCCceeEEEE-EecCch
Q psy2388 101 HITR----KIGKKPIVIGDLNKKIYEIGW-CTGAAQ 131 (159)
Q Consensus 101 ~lk~----~l~~~~i~~~~~~~~i~rVai-~~Gsg~ 131 (159)
.+++ .|++.+ ++.+.++ ..|||| +||+|.
T Consensus 63 ~l~~~~~~~~~l~i-~l~~~~~-~~ki~vl~Sg~g~ 96 (280)
T TIGR00655 63 AFKSALAEKFEMTW-ELILADK-LKRVAILVSKEDH 96 (280)
T ss_pred HHHHHHHHHhCCEE-EEecCCC-CcEEEEEEcCCCh
Confidence 5554 555543 3333333 347777 688886
No 59
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=36.88 E-value=39 Score=22.98 Aligned_cols=26 Identities=8% Similarity=0.275 Sum_probs=22.5
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.+.|.+|...++.+|...|++.++++
T Consensus 17 k~kflv~~~~tv~~~~~~lrk~L~l~ 42 (87)
T cd01612 17 QKVFKISATQSFQAVIDFLRKRLKLK 42 (87)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 45677899999999999999999973
No 60
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=36.27 E-value=71 Score=25.65 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=23.2
Q ss_pred EEEEcCCCCccCCCC---CccChHHHHHHHHHhc-Ccc-EEEeccCCCC
Q psy2388 5 AILVHHGYFWKGENS---NIVGIKKKRLEQLIIN-KIN-LYAYHLPLDM 48 (159)
Q Consensus 5 lIItHHp~~f~~~~~---~~~~~~~~~~~~l~~~-~I~-vy~~Ht~lD~ 48 (159)
+|+.|||++..+... .......+..+.+.++ ++. +++=|+.-+.
T Consensus 160 vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~ 208 (275)
T PRK11148 160 LVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQEL 208 (275)
T ss_pred EEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHH
Confidence 678888777654211 1111223444555564 664 6776776543
No 61
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.14 E-value=79 Score=24.08 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.9
Q ss_pred CceeEEEEEecCch--HHHHHHHhcCCcEEEEc
Q psy2388 118 KKIYEIGWCTGAAQ--NLLTDAINEGVTAYISG 148 (159)
Q Consensus 118 ~~i~rVai~~Gsg~--~~i~~a~~~~~D~~ITG 148 (159)
..+..++++||.|. .++..+.+.|..|++-|
T Consensus 104 ~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 104 PNIDAVALVTRDADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred CCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEe
Confidence 56889999999996 67888888999999998
No 62
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.60 E-value=59 Score=23.72 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=28.0
Q ss_pred EcCCCCccCCCC------CccChHHHHHHHHHhcCccEEEeccCC
Q psy2388 8 VHHGYFWKGENS------NIVGIKKKRLEQLIINKINLYAYHLPL 46 (159)
Q Consensus 8 tHHp~~f~~~~~------~~~~~~~~~~~~l~~~~I~vy~~Ht~l 46 (159)
+||++-|-|.+. +..+..++.++.+.++||.|.++.+.-
T Consensus 23 ~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 23 CHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 567766655322 124467999999999999998887643
No 63
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=34.80 E-value=58 Score=27.42 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=21.9
Q ss_pred EEEecCchHHHHHHH--hcCCcEEEEccCCchhhh
Q psy2388 124 GWCTGAAQNLLTDAI--NEGVTAYISGEISESTKK 156 (159)
Q Consensus 124 ai~~Gsg~~~i~~a~--~~~~D~~ITGe~k~~~~~ 156 (159)
-+..|+.+.+.++.. ...+|+|+++|.++-+.+
T Consensus 63 ~~~~~gSg~L~~QI~e~Gap~DVfisAd~~~~~~l 97 (334)
T PRK04168 63 QREAGGSVKCVRKITELGKKADIMASADYTLIPKM 97 (334)
T ss_pred EEEeCcHHHHHHHHHhcCCCCCEEEECchhHHHHH
Confidence 334454455666653 367899999998876654
No 64
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=34.66 E-value=35 Score=29.65 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEE-Ecc
Q psy2388 93 ITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYI-SGE 149 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~I-TGe 149 (159)
.|-.-|-+-|++.+|.+.+.++| +-.++-++=+.|+..+....+.+.|||.++ +-+
T Consensus 226 ~s~~ll~diLR~~~GF~G~ViSD-~~~m~~~~~~~g~~~d~~~~al~AG~Di~l~~~~ 282 (397)
T COG1472 226 LSRKLLTDILRDEWGFDGVVISD-DLSMKAIAAAHGSAADRAEAALKAGVDIVLVCNE 282 (397)
T ss_pred CCHHHHHHHHHhccCCCeEEEee-cchhHHHHHhccCHHHHHHHHHhcCCCEEecCCc
Confidence 34455666899999999999875 222333333378888888888999999987 443
No 65
>KOG1654|consensus
Probab=34.56 E-value=41 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.5
Q ss_pred cccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 83 NLKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 83 ~~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
|++.|++|..+|+.+|+.-|.+.+.++
T Consensus 45 DK~KyLVP~dltvgqfi~iIRkRiqL~ 71 (116)
T KOG1654|consen 45 DKKKYLVPDDLTVGQFIKIIRKRIQLS 71 (116)
T ss_pred ccceeeccccccHHHHHHHHHHHhccC
Confidence 567899999999999999999999986
No 66
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=34.55 E-value=67 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=23.6
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
|.|=+|-..+-++.+.+.|||+|+.|-.
T Consensus 182 IeVDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 182 ISIDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEEChh
Confidence 6666777788899999999999999953
No 67
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=34.54 E-value=59 Score=26.97 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=34.2
Q ss_pred ccccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHh-cCCcEEEEccCCchhhhc
Q psy2388 86 RYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAIN-EGVTAYISGEISESTKKN 157 (159)
Q Consensus 86 ~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~-~~~D~~ITGe~k~~~~~~ 157 (159)
||..+ ...++++.+..++.+.. +.+.+| +|-+.-|+.+.+.+++.. ..+|+|++++.++-+.+.
T Consensus 17 ~~~~~-~~~~~~i~~~fe~~~~~------~~g~~v-~v~~~~g~Sg~l~~Qi~~Ga~~Dvf~sa~~~~~~~l~ 81 (315)
T TIGR00971 17 SYDPT-RELYEQYNKAFEAHWKQ------DTGDNV-VIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIA 81 (315)
T ss_pred ccccc-HHHHHHHHHHHHHHHHh------cCCCce-EEEEecCCcHHHHHHHHcCCCcCEEecCCHHHHHHHH
Confidence 45454 23566666666553210 112233 222333444455555533 677999999987766543
No 68
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=33.62 E-value=89 Score=20.82 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=24.1
Q ss_pred ceeEEEEEecCch-------HHHHHHHhcCCcEEEEccC
Q psy2388 119 KIYEIGWCTGAAQ-------NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 119 ~i~rVai~~Gsg~-------~~i~~a~~~~~D~~ITGe~ 150 (159)
++.-..|++|.|. .+.++|.+.|||+.|-=.+
T Consensus 13 ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAnAVVGvr~ 51 (74)
T TIGR03884 13 QLYYLGIVSTESDNVDEIVENLREKVKAKGGMGLIAFRI 51 (74)
T ss_pred EEEEEEEEEEecCCHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 4567788888874 5778889999999875433
No 69
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=33.35 E-value=3.7e+02 Score=25.80 Aligned_cols=106 Identities=12% Similarity=0.176 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc---------------CCeeeEEEEcccccccc
Q psy2388 25 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK---------------NNIGWIGKIINLKRYNF 89 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~---------------~~~g~ig~~~~~~~~~l 89 (159)
..+.++.|.+.||.+.-. |- |.. .....+|+.+|+.....+.- ...-.+++ +
T Consensus 520 ~~~aI~~l~~aGI~vvmi-TG-D~~---~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr--------~ 586 (867)
T TIGR01524 520 TKEAIAALFKNGINVKVL-TG-DNE---IVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFAR--------L 586 (867)
T ss_pred HHHHHHHHHHCCCEEEEE-cC-CCH---HHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEE--------C
Confidence 468999999999997644 33 532 57899999999963211100 01122333 3
Q ss_pred CCccCHHHHHHHHHhHhCCCcEEEcCC--CCc---eeEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 90 KKIITIKDLFHHITRKIGKKPIVIGDL--NKK---IYEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 90 ~~~~~~~~l~~~lk~~l~~~~i~~~~~--~~~---i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
. |-.=.++++.+++. |..+..+||+ |.+ ---|+|+-|+|.+..+++ +|+.++-|
T Consensus 587 ~-Pe~K~~iV~~lq~~-G~vVam~GDGvNDapALk~AdVGIAmg~gtdvAk~a----ADiVLldd 645 (867)
T TIGR01524 587 T-PMQKSRIIGLLKKA-GHTVGFLGDGINDAPALRKADVGISVDTAADIAKEA----SDIILLEK 645 (867)
T ss_pred C-HHHHHHHHHHHHhC-CCEEEEECCCcccHHHHHhCCEEEEeCCccHHHHHh----CCEEEecC
Confidence 2 33345566666543 4334444764 322 345999999888876665 89998876
No 70
>PRK15456 universal stress protein UspG; Provisional
Probab=33.29 E-value=48 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=19.0
Q ss_pred EEecCch-HHHHHHHhcCCcEEEEccCC
Q psy2388 125 WCTGAAQ-NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 125 i~~Gsg~-~~i~~a~~~~~D~~ITGe~k 151 (159)
+..|+-. .+++.+.+.++|++|.|--.
T Consensus 88 v~~G~~~~~I~~~a~~~~~DLIVmG~~g 115 (142)
T PRK15456 88 VRFGSVRDEVNELAEELGADVVVIGSRN 115 (142)
T ss_pred EcCCChHHHHHHHHhhcCCCEEEEcCCC
Confidence 3446555 45666777899999998755
No 71
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=33.18 E-value=56 Score=26.79 Aligned_cols=34 Identities=3% Similarity=-0.015 Sum_probs=22.5
Q ss_pred EEEEecCchHHHHHHH--hcCCcEEEEccCCchhhh
Q psy2388 123 IGWCTGAAQNLLTDAI--NEGVTAYISGEISESTKK 156 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~--~~~~D~~ITGe~k~~~~~ 156 (159)
|-+..|+.+.+.++.. ...+|+|++.+.++-+.+
T Consensus 31 v~~~~~gSg~L~~Qi~e~Gap~DVfisAd~~~~~~L 66 (273)
T TIGR03730 31 VQREAAGSVAAVRKITELGKPADILASADYTLIPQM 66 (273)
T ss_pred EEEEeCcHHHHHHHHHHcCCCeeEEEeCCHHHHHHH
Confidence 3344455555666664 467899999998876654
No 72
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=33.14 E-value=1.1e+02 Score=21.65 Aligned_cols=45 Identities=16% Similarity=0.008 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCccCCC-CCccChHHHHHHHHHhcCcc-EEEeccCCC
Q psy2388 3 ADAILVHHGYFWKGEN-SNIVGIKKKRLEQLIINKIN-LYAYHLPLD 47 (159)
Q Consensus 3 adlIItHHp~~f~~~~-~~~~~~~~~~~~~l~~~~I~-vy~~Ht~lD 47 (159)
.+++++|||++-.... ...........+.+.+.+.. +.+=|+...
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~ 103 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHTHLN 103 (129)
T ss_pred cCEEEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCcCCC
Confidence 4689999998532211 11111233444555566655 334355443
No 73
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=32.96 E-value=62 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=15.1
Q ss_pred chHHHHHHHhcCCcEEEEccCCchh
Q psy2388 130 AQNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
|....+.....|||++|+|.+....
T Consensus 50 ~~~~~~~l~~~~v~~vi~~~iG~~a 74 (102)
T cd00562 50 GKLAARLLALEGCDAVLVGGIGGPA 74 (102)
T ss_pred chHHHHHHHHCCCcEEEEcccCccH
Confidence 3344444456777777777766543
No 74
>PRK09453 phosphodiesterase; Provisional
Probab=32.70 E-value=1.5e+02 Score=22.12 Aligned_cols=30 Identities=7% Similarity=-0.103 Sum_probs=19.5
Q ss_pred eEEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
+||.++=|.....-..+...++|++|.|=.
T Consensus 98 ~~i~l~HG~~~~~~~~~~~~~~d~vi~GHt 127 (182)
T PRK09453 98 KRLFLTHGHLYGPENLPALHDGDVLVYGHT 127 (182)
T ss_pred eEEEEECCCCCChhhcccccCCCEEEECCC
Confidence 478888886643211134568999999964
No 75
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=32.38 E-value=79 Score=25.30 Aligned_cols=44 Identities=11% Similarity=-0.155 Sum_probs=24.3
Q ss_pred cEEEEcCCCCccCCCCCccChHHHHHHHHHhcCcc-EEEeccCCCCC
Q psy2388 4 DAILVHHGYFWKGENSNIVGIKKKRLEQLIINKIN-LYAYHLPLDMH 49 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~-vy~~Ht~lD~~ 49 (159)
-+|++|||+..-. ... .....+....+.++++. +++=|+..+..
T Consensus 168 ~IV~~HhP~~~~~-~~~-~~~~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 168 TIWFGHYPTSTII-SPS-AKSSSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred EEEEEcccchhcc-CCC-cchhHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 3788888874211 111 11122355666677774 56777777655
No 76
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.07 E-value=91 Score=18.54 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=30.7
Q ss_pred cCCccCHHHHHHHHHhHhCC-CcEEEc-CCCCceeEEEEEecCchHHHHHH
Q psy2388 89 FKKIITIKDLFHHITRKIGK-KPIVIG-DLNKKIYEIGWCTGAAQNLLTDA 137 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~-~~i~~~-~~~~~i~rVai~~Gsg~~~i~~a 137 (159)
||..++.++|.+.+++ +|. ..+.+. +....-++.|++.=.-.+..+.|
T Consensus 6 lp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a 55 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKA 55 (70)
T ss_dssp ETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHH
Confidence 9999999999998887 553 344442 34556677777654433333344
No 77
>KOG3325|consensus
Probab=32.02 E-value=63 Score=24.81 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=23.6
Q ss_pred EEEEEecCc-------hHHHHHHHhcCCcEEEEccCCchhh
Q psy2388 122 EIGWCTGAA-------QNLLTDAINEGVTAYISGEISESTK 155 (159)
Q Consensus 122 rVai~~Gsg-------~~~i~~a~~~~~D~~ITGe~k~~~~ 155 (159)
||++|.|-- .++.-.|.+.++|.++||-...-++
T Consensus 81 kIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f~A 121 (183)
T KOG3325|consen 81 KIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKFEA 121 (183)
T ss_pred EEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeEEE
Confidence 688898852 2444455678999999997654443
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.81 E-value=2.9e+02 Score=22.76 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=20.6
Q ss_pred cChHHHHHHHHHhcCccEEEeccCCC
Q psy2388 22 VGIKKKRLEQLIINKINLYAYHLPLD 47 (159)
Q Consensus 22 ~~~~~~~~~~l~~~~I~vy~~Ht~lD 47 (159)
.|...+.-..|.++++++....+--+
T Consensus 18 pGIVa~VT~~La~~~vNI~dls~~~~ 43 (286)
T PRK13011 18 AGIVAAVTGFLAEHGCYITELHSFDD 43 (286)
T ss_pred CCHHHHHHHHHHhCCCCEEEeeeeec
Confidence 45678888999999999988777643
No 79
>PF06871 TraH_2: TraH_2; InterPro: IPR010680 This family consists of several TraH proteins, which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to IPR010927 from INTERPRO.
Probab=31.77 E-value=49 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEEc
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVIG 114 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~~ 114 (159)
+|.|.|.+|-+..+++.+|..++|+|
T Consensus 46 VPkp~tpdeAm~liR~~~G~avVRVG 71 (206)
T PF06871_consen 46 VPKPKTPDEAMALIRQYVGQAVVRVG 71 (206)
T ss_pred ecCCCCHHHHHHHHHHhcCceEEEEe
Confidence 89999999999999999999999986
No 80
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=31.67 E-value=66 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.7
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
.|+|.+|=...-+..+.+.|+|.+|.|-
T Consensus 175 ~I~VdGGI~~~ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 175 NIQVDGGINLETIDIAADAGANVIVAGS 202 (228)
T ss_pred eEEECCCCCHHHHHHHHHcCCCEEEEch
Confidence 4777788888889999999999998884
No 81
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.60 E-value=68 Score=27.78 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=26.0
Q ss_pred CccEEEEcCCCCccCCCCCccChH---HHHHHHHHhcCccEEEeccCCCC
Q psy2388 2 NADAILVHHGYFWKGENSNIVGIK---KKRLEQLIINKINLYAYHLPLDM 48 (159)
Q Consensus 2 ~adlIItHHp~~f~~~~~~~~~~~---~~~~~~l~~~~I~vy~~Ht~lD~ 48 (159)
+.++||.|||. +++. .++. +++..+.-=.+-.+|+--+|++.
T Consensus 270 ~t~liikhHpm-drg~----idy~~~i~~~~~q~~v~~RvlYvhd~~lpv 314 (403)
T COG3562 270 GTNLIIKHHPM-DRGF----IDYPRDIKRRFVQYEVKGRVLYVHDVPLPV 314 (403)
T ss_pred ccceEEEeccc-cccc----hhhHHHHHHHHHHhccCceEEEecCCCchH
Confidence 56899999987 4442 2222 23333333337778988888875
No 82
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=31.51 E-value=66 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=17.6
Q ss_pred EEecCchHHHHHHHh-cCCcEEEEccCCc
Q psy2388 125 WCTGAAQNLLTDAIN-EGVTAYISGEISE 152 (159)
Q Consensus 125 i~~Gsg~~~i~~a~~-~~~D~~ITGe~k~ 152 (159)
+..|+.+.++.++.+ ..+|++++++...
T Consensus 25 ~~~~gs~~l~~~l~~~~~aDv~~~~~~~~ 53 (216)
T TIGR01256 25 FSFGSSGTLYTQIENGAPADLFISADNKW 53 (216)
T ss_pred EEeCChHHHHHHHHcCCCCcEEEECCHHH
Confidence 344555556665543 3499999998643
No 83
>PRK05866 short chain dehydrogenase; Provisional
Probab=30.91 E-value=71 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=17.9
Q ss_pred EEEEEecC-ch---HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGA-AQ---NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gs-g~---~~i~~a~~~~~D~~ITG 148 (159)
++++++|+ |+ .+.+...+.|+++++++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 34455444 43 66777778899998876
No 84
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=30.36 E-value=31 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.2
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEE
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVI 113 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~ 113 (159)
++.++|+++|++.+++.+|+.+-.+
T Consensus 39 v~~~~Tl~~li~~~~~~~~lev~ml 63 (125)
T PF09358_consen 39 VNGDMTLQELIDYFKEKYGLEVTML 63 (125)
T ss_dssp EES--BHHHHHHHHHHTTS-EEEEE
T ss_pred EcCCCCHHHHHHHHHHHhCceEEEE
Confidence 5657999999999999999875444
No 85
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=30.16 E-value=69 Score=26.94 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHh------cCCcEEEEccCCchhh
Q psy2388 95 IKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAIN------EGVTAYISGEISESTK 155 (159)
Q Consensus 95 ~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~------~~~D~~ITGe~k~~~~ 155 (159)
+++..+++++.|+.+ + =..|.+.+|||...++.+.. ..++++++|...++-.
T Consensus 39 ~~~~~~~l~~l~~~~-------~--~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~ 96 (349)
T TIGR01364 39 ANEAESDLRELLNIP-------D--NYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAA 96 (349)
T ss_pred HHHHHHHHHHHhCCC-------C--CceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHH
Confidence 355566666666632 1 13677777777655544422 1346677777666543
No 86
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=29.92 E-value=48 Score=26.74 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=36.5
Q ss_pred ccCHHHHHHH---HHhHhCCCcEEE--cCC-CCce-----------eEEEEEecCc---hHHHHHHHhcCCcEEEEccCC
Q psy2388 92 IITIKDLFHH---ITRKIGKKPIVI--GDL-NKKI-----------YEIGWCTGAA---QNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 92 ~~~~~~l~~~---lk~~l~~~~i~~--~~~-~~~i-----------~rVai~~Gsg---~~~i~~a~~~~~D~~ITGe~k 151 (159)
|.+-.+++.. -.+.|+.+.+.+ |.+ ...+ ..+-+.-|+| ....+++.+.|||+.++|..-
T Consensus 135 ~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 135 PLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp --SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 3344454433 347788886655 332 2233 2244455555 356777788999999999987
Q ss_pred chhh
Q psy2388 152 ESTK 155 (159)
Q Consensus 152 ~~~~ 155 (159)
|-+.
T Consensus 215 ee~~ 218 (230)
T PF01884_consen 215 EEDP 218 (230)
T ss_dssp HHHH
T ss_pred EEcc
Confidence 6553
No 87
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=29.45 E-value=54 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.0
Q ss_pred ccccCC-----ccCHHHHHHHHHhHhCCC
Q psy2388 86 RYNFKK-----IITIKDLFHHITRKIGKK 109 (159)
Q Consensus 86 ~~~l~~-----~~~~~~l~~~lk~~l~~~ 109 (159)
+|.+|. .+++++|.++|.+.|+++
T Consensus 13 Rf~l~~~~~~~d~~~~~L~~kI~~~f~l~ 41 (91)
T cd06398 13 RFTFPVAENQLDLNMDGLREKVEELFSLS 41 (91)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHhCCC
Confidence 455764 489999999999999986
No 88
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.33 E-value=73 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=18.0
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
++++++|+++ .+.+...+.|+.+++++-
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 47 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTH 47 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4555555543 556666778998887753
No 89
>KOG1208|consensus
Probab=29.32 E-value=73 Score=26.75 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=25.6
Q ss_pred CceeEEEEEecCch----HHHHHHHhcCCcEEEEccCC
Q psy2388 118 KKIYEIGWCTGAAQ----NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 118 ~~i~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~k 151 (159)
....+++++||+-+ ...++.+..|+.|++++--.
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNE 69 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCH
Confidence 33458999988743 66777788999999997543
No 90
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=29.30 E-value=79 Score=25.34 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=18.1
Q ss_pred ecCchHHHHHHHh-cCCcEEEEccCCchhh
Q psy2388 127 TGAAQNLLTDAIN-EGVTAYISGEISESTK 155 (159)
Q Consensus 127 ~Gsg~~~i~~a~~-~~~D~~ITGe~k~~~~ 155 (159)
+||| .+.+++.+ ..+|+|++++.++-+.
T Consensus 61 ~~Sg-~l~~qi~~g~~~Dv~~~a~~~~~~~ 89 (257)
T PRK10677 61 ASSS-TLARQIEQGAPADLFISADQKWMDY 89 (257)
T ss_pred cccH-HHHHHHHcCCCCCEEEECCHHHHHH
Confidence 3444 56666543 3489999999766543
No 91
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=29.24 E-value=44 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.2
Q ss_pred cccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 83 NLKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 83 ~~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
|.+.|++|..+|+.+|...|++.++++
T Consensus 33 dk~KfLvp~~~tv~qf~~~ir~rl~l~ 59 (104)
T PF02991_consen 33 DKKKFLVPKDLTVGQFVYIIRKRLQLS 59 (104)
T ss_dssp SSSEEEEETTSBHHHHHHHHHHHTT--
T ss_pred CccEEEEcCCCchhhHHHHhhhhhcCC
Confidence 346788999999999999999999874
No 92
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=28.95 E-value=73 Score=27.83 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=23.3
Q ss_pred EEEEcCCCCccCCCCCccC-hHHHHHHHHHhcCccEEE-eccC
Q psy2388 5 AILVHHGYFWKGENSNIVG-IKKKRLEQLIINKINLYA-YHLP 45 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~~~-~~~~~~~~l~~~~I~vy~-~Ht~ 45 (159)
+++-|||+.=.+. ..-+. ...+..-.|.++++.+|- =|+.
T Consensus 217 IVvGHhPIySsG~-hg~~~~L~~~L~PLL~ky~VdlYisGHDH 258 (394)
T PTZ00422 217 IVVGDKPIYSSGS-SKGDSYLSYYLLPLLKDAQVDLYISGYDR 258 (394)
T ss_pred EEEecCceeecCC-CCCCHHHHHHHHHHHHHcCcCEEEEcccc
Confidence 5677999965442 11112 234555566668999874 4554
No 93
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=28.64 E-value=1.8e+02 Score=27.15 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHHHHHHHh
Q psy2388 25 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITR 104 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~ 104 (159)
..+.++.|.+.||.+. +=|- |. + .....+|+.+|+.+ .+.+ .. |-.=.++++.+++
T Consensus 446 a~e~I~~Lr~~GI~vv-MiTG-Dn-~--~TA~aIA~elGI~~----------v~A~--------~~-PedK~~iV~~lQ~ 501 (673)
T PRK14010 446 LVERFRELREMGIETV-MCTG-DN-E--LTAATIAKEAGVDR----------FVAE--------CK-PEDKINVIREEQA 501 (673)
T ss_pred HHHHHHHHHHCCCeEE-EECC-CC-H--HHHHHHHHHcCCce----------EEcC--------CC-HHHHHHHHHHHHh
Confidence 3466666666666653 2221 21 1 35666666666642 1222 21 2233455555554
Q ss_pred HhCCCcEEEcCC--CCc---eeEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 105 KIGKKPIVIGDL--NKK---IYEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 105 ~l~~~~i~~~~~--~~~---i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
. |..+...||+ |.+ ---|+|+-|+|.+.-++| +|..++.|
T Consensus 502 ~-G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeA----ADiVLldd 546 (673)
T PRK14010 502 K-GHIVAMTGDGTNDAPALAEANVGLAMNSGTMSAKEA----ANLIDLDS 546 (673)
T ss_pred C-CCEEEEECCChhhHHHHHhCCEEEEeCCCCHHHHHh----CCEEEcCC
Confidence 3 3334444875 322 245999999998887766 79988865
No 94
>PLN02780 ketoreductase/ oxidoreductase
Probab=28.60 E-value=74 Score=26.27 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=20.8
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.+++++||+++ .+.++..+.|+++++++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~ 84 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVA 84 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46777777653 56777778899999876
No 95
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=28.58 E-value=2.4e+02 Score=24.40 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHhHhCC------CcEEE--cCCCCceeEEEEE----ec-CchHHHHHHHhcCCcEEE-EccC
Q psy2388 93 ITIKDLFHHITRKIGK------KPIVI--GDLNKKIYEIGWC----TG-AAQNLLTDAINEGVTAYI-SGEI 150 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~------~~i~~--~~~~~~i~rVai~----~G-sg~~~i~~a~~~~~D~~I-TGe~ 150 (159)
-+.++++..+.+.|.. +.+.+ |...++|..|=.+ +| -|..+.+.+...|++|.+ +|..
T Consensus 164 ~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 164 AEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred CCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 3578888888877743 11122 2223334333332 23 345777778889999765 5543
No 96
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=28.53 E-value=1.3e+02 Score=23.61 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=19.7
Q ss_pred cEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEE-eccC
Q psy2388 4 DAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYA-YHLP 45 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~-~Ht~ 45 (159)
.++++|||++..... ..+....+.+.++.++. =|+.
T Consensus 167 ~i~~~H~p~~~~~~~------~~~~~~~~~~~~v~~vl~GH~H 203 (232)
T cd07393 167 KIVMLHYPPANENGD------DSPISKLIEEYGVDICVYGHLH 203 (232)
T ss_pred EEEEECCCCcCCCCC------HHHHHHHHHHcCCCEEEECCCC
Confidence 588899987654321 12344555566766433 2554
No 97
>PRK07985 oxidoreductase; Provisional
Probab=27.74 E-value=80 Score=25.47 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=18.7
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
++++++|+++ .+.+...+.|+++++++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEec
Confidence 4566665533 56677788899999875
No 98
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=27.22 E-value=1.6e+02 Score=23.81 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=31.8
Q ss_pred ccCHHHHHHHHHhHh---CCC-cEEEcCCCC-----ce--eEEEEEecCchHHHHHHHhcCCcEE
Q psy2388 92 IITIKDLFHHITRKI---GKK-PIVIGDLNK-----KI--YEIGWCTGAAQNLLTDAINEGVTAY 145 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l---~~~-~i~~~~~~~-----~i--~rVai~~Gsg~~~i~~a~~~~~D~~ 145 (159)
|++..|-++.+-+++ +.. .+.+|.+++ +| .+++++.-+|...+..+.+.|.++=
T Consensus 156 P~~a~e~~~~il~~l~~~g~~Gil~iG~p~~~vlgvpv~~~~~Giv~~GG~Npia~~~E~Gi~i~ 220 (236)
T PF01995_consen 156 PMSAREKAEEILEKLEKAGFSGILEIGEPNEPVLGVPVEPGMVGIVVIGGLNPIAAAVEAGIPIE 220 (236)
T ss_dssp ETTTHHHHHHHHHHH---T-TTEEEE--TT--BTTB---TTEEEEEEE-TTHHHHHHHHTT---E
T ss_pred chhHHHHHHHHHHHhhhcccceeEEeCCCCCcccCCccCCCeEEEEEEecCcHHHHHHHcCCeeE
Confidence 466666666676777 666 455665332 22 5788888888888888888998864
No 99
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=27.13 E-value=1.2e+02 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=25.7
Q ss_pred EEEEcCCCCccCCC---CCccC----hHHHHHHHHHhc-CccE-EEeccCCCC
Q psy2388 5 AILVHHGYFWKGEN---SNIVG----IKKKRLEQLIIN-KINL-YAYHLPLDM 48 (159)
Q Consensus 5 lIItHHp~~f~~~~---~~~~~----~~~~~~~~l~~~-~I~v-y~~Ht~lD~ 48 (159)
+|++|||++..... ....+ ...+.+..|.+. ++.. ++=|+..+.
T Consensus 341 VVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~ 393 (496)
T TIGR03767 341 VLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNK 393 (496)
T ss_pred EEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCc
Confidence 68999998754321 11101 124556666664 6775 666888775
No 100
>KOG2733|consensus
Probab=27.13 E-value=37 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=19.6
Q ss_pred chHHHHHHHhcCCcEE-EEccCCchhhh
Q psy2388 130 AQNLLTDAINEGVTAY-ISGEISESTKK 156 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~-ITGe~k~~~~~ 156 (159)
|...++.|++.|++.+ |+||.-+-+-+
T Consensus 98 GE~VVkacienG~~~vDISGEP~f~E~m 125 (423)
T KOG2733|consen 98 GEPVVKACIENGTHHVDISGEPQFMERM 125 (423)
T ss_pred CcHHHHHHHHcCCceeccCCCHHHHHHH
Confidence 5678888899998765 88886554433
No 101
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=26.78 E-value=84 Score=27.37 Aligned_cols=29 Identities=14% Similarity=0.286 Sum_probs=24.5
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
+|++.+|=+.+-++++.+.|+|.+|-|-.
T Consensus 332 ~I~VdGGI~~eti~~l~~aGADivVVGsa 360 (391)
T PRK13307 332 LVAVAGGVRVENVEEALKAGADILVVGRA 360 (391)
T ss_pred cEEEECCcCHHHHHHHHHcCCCEEEEeHH
Confidence 47888888888899999999999988843
No 102
>PRK15005 universal stress protein F; Provisional
Probab=26.66 E-value=85 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=18.1
Q ss_pred EEecCch-HHHHHHHhcCCcEEEEcc
Q psy2388 125 WCTGAAQ-NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 125 i~~Gsg~-~~i~~a~~~~~D~~ITGe 149 (159)
+..|.-. .+++.+.+.++|+.+.|-
T Consensus 90 v~~G~p~~~I~~~a~~~~~DLIV~Gs 115 (144)
T PRK15005 90 VEEGSPKDRILELAKKIPADMIIIAS 115 (144)
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 4456554 466667788999999984
No 103
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=26.61 E-value=1.8e+02 Score=23.80 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=46.1
Q ss_pred cChHHHHHHHHHhcCccEEEeccCCCCC-CCCCHHHHH--HHHcCCccccccccCCeeeEEEEccccccccCCccCHHHH
Q psy2388 22 VGIKKKRLEQLIINKINLYAYHLPLDMH-PKLGNNAQL--AKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDL 98 (159)
Q Consensus 22 ~~~~~~~~~~l~~~~I~vy~~Ht~lD~~-~~~G~n~~L--a~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l 98 (159)
++...+++....++||-+|.=-|-+-.+ .+.-++.+| |+.||++..+.= - |. + |++.++.
T Consensus 59 kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS----~---G~--------i--~m~~eek 121 (258)
T COG1809 59 KDQVKEKIDMYKENDIYVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEIS----N---GT--------I--PMSTEEK 121 (258)
T ss_pred HHHHHHHHHHHHHcCceecCCceEEEeehhcccHHHHHHHHHHcCccEEEec----C---Ce--------e--ecchHHH
Confidence 3357899999999999999877766543 222455555 456777665541 1 34 4 4788888
Q ss_pred HHHHHhHhC
Q psy2388 99 FHHITRKIG 107 (159)
Q Consensus 99 ~~~lk~~l~ 107 (159)
+..|++.-.
T Consensus 122 ~~lIe~a~d 130 (258)
T COG1809 122 CRLIERAVD 130 (258)
T ss_pred HHHHHHHHh
Confidence 887777654
No 104
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=26.57 E-value=92 Score=26.27 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHh------cCCcEEEEccCCchhh
Q psy2388 95 IKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAIN------EGVTAYISGEISESTK 155 (159)
Q Consensus 95 ~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~------~~~D~~ITGe~k~~~~ 155 (159)
+++..+++++.|+.+ +-..|.+.+|||...++.+.. ..+|++++|...++-.
T Consensus 50 ~~~~~~~l~~l~~~~---------~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~ 107 (360)
T PRK05355 50 AEEAEADLRELLNIP---------DNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAI 107 (360)
T ss_pred HHHHHHHHHHHhCCC---------CCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHH
Confidence 355566666666531 113567777777654443311 2456677776666543
No 105
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=26.52 E-value=88 Score=21.30 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=13.0
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
|.||++-|....+...+.|+.+|.+
T Consensus 68 vvi~~~iG~~a~~~L~~~GI~v~~~ 92 (106)
T cd00852 68 AVLCAKIGDEPKEKLEEAGIEVIEA 92 (106)
T ss_pred EEeehhhCccHHHHHHHCCCEEEEe
Confidence 3444555555555555556666544
No 106
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.29 E-value=52 Score=28.13 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=49.9
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEcCC------C--Cce--eEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhc
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIGDL------N--KKI--YEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKN 157 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~~~------~--~~i--~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~ 157 (159)
.+|+..+++++.+......+.+.|+ + .-| |-|+.=|.|-..-++.|.+++.|+.+-||++.-+.+.
T Consensus 139 STTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~ 214 (353)
T COG2805 139 STTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIR 214 (353)
T ss_pred HHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccHHHHH
Confidence 5788999999988776655555543 1 112 3477778888889999999999999999999876543
No 107
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=26.20 E-value=44 Score=26.21 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=6.6
Q ss_pred HHhcCCcEEEEccC
Q psy2388 137 AINEGVTAYISGEI 150 (159)
Q Consensus 137 a~~~~~D~~ITGe~ 150 (159)
|.+.|++.++|||.
T Consensus 104 a~~~ga~~IvTGEs 117 (197)
T PF02568_consen 104 AEEEGADAIVTGES 117 (197)
T ss_dssp HHHTT--EEE----
T ss_pred HHHCCCCEEEeCch
Confidence 45789999999996
No 108
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=26.13 E-value=59 Score=20.90 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=26.2
Q ss_pred cCCccCHHHHHHHHHhHhCC--CcEEE--cCCCCceeEEEEEec
Q psy2388 89 FKKIITIKDLFHHITRKIGK--KPIVI--GDLNKKIYEIGWCTG 128 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~--~~i~~--~~~~~~i~rVai~~G 128 (159)
++.++++++|.+.|++.|+. ..+.+ -+.+. ..|.|.+-
T Consensus 18 ~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg--D~V~i~sd 59 (84)
T PF00564_consen 18 LPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG--DLVTISSD 59 (84)
T ss_dssp ECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS--SEEEESSH
T ss_pred cCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC--CEEEeCCH
Confidence 67788999999999999998 45444 33222 45555443
No 109
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=26.01 E-value=1.2e+02 Score=21.74 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=22.8
Q ss_pred CceeEEEE-EecCc-hHHHHHHHhcCCc-EEEEccC
Q psy2388 118 KKIYEIGW-CTGAA-QNLLTDAINEGVT-AYISGEI 150 (159)
Q Consensus 118 ~~i~rVai-~~Gsg-~~~i~~a~~~~~D-~~ITGe~ 150 (159)
..++.|-| |+|.= ..++-.|.+.||| +++.|.-
T Consensus 27 ~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 27 PNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred CCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 34666666 66664 4788899999999 5565543
No 110
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=25.99 E-value=44 Score=26.65 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.5
Q ss_pred ccEEEEcCCCCcc
Q psy2388 3 ADAILVHHGYFWK 15 (159)
Q Consensus 3 adlIItHHp~~f~ 15 (159)
-++++||||++=.
T Consensus 149 ~~VLv~H~PP~g~ 161 (224)
T cd07388 149 RKVFLFHTPPYHK 161 (224)
T ss_pred CeEEEECCCCCCC
Confidence 5789999999654
No 111
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=25.94 E-value=99 Score=24.71 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=21.3
Q ss_pred EEEEcCCCCccCCCCCc---cChHHHHH-HHHHhcCccE-EEeccCCC
Q psy2388 5 AILVHHGYFWKGENSNI---VGIKKKRL-EQLIINKINL-YAYHLPLD 47 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~---~~~~~~~~-~~l~~~~I~v-y~~Ht~lD 47 (159)
+++.|||++-....... .....+.+ ..+.++++.+ ++=|+..-
T Consensus 158 iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y 205 (294)
T cd00839 158 IVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAY 205 (294)
T ss_pred EEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceee
Confidence 45667777543321111 11223334 4455778864 66676654
No 112
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=25.74 E-value=2.1e+02 Score=23.07 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEE--cCCCCc-----eeEEEEEecCchHHHHHHHhcCCc
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVI--GDLNKK-----IYEIGWCTGAAQNLLTDAINEGVT 143 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~--~~~~~~-----i~rVai~~Gsg~~~i~~a~~~~~D 143 (159)
+. +-+++.-...+++.=..+.+++ +|+... --.+.+++|.|+.+|.+..++|.|
T Consensus 48 V~-~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG~lI~~ILee~~~ 108 (226)
T COG2384 48 VV-PGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGGTLIREILEEGKE 108 (226)
T ss_pred cc-cCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcHHHHHHHHHHhhh
Confidence 54 4456665666665544454444 554222 235778889999888888777655
No 113
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=25.72 E-value=1.2e+02 Score=24.97 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=39.8
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc--hHHHHHHHhcCCcEEEEccCCchh
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA--QNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg--~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
..-+.+.+..+|++++.+.+-++..+.. +|=| -...++..+.|+|++=+|.-.|..
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~ENaa-------~G~Git~k~y~~l~~~G~dviT~GNH~wd~ 72 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNGENAA-------GGFGITEKIYKELLEAGADVITLGNHTWDQ 72 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcCcccc-------CCcCCCHHHHHHHHHhCCCEEecccccccc
Confidence 3567889999999999887666432221 1223 366778889999999999877654
No 114
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=25.16 E-value=97 Score=24.84 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=18.1
Q ss_pred eEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
.||+|.+ .| +..++|.+.||| |+.||
T Consensus 72 ~kI~Vfa-~~-~~~~~Ak~aGa~-~vg~e 97 (230)
T PRK05424 72 VRVAVFA-KG-EKAEEAKAAGAD-IVGGE 97 (230)
T ss_pred cEEEEEC-Ch-HhHHHHHHcCCC-EeCHH
Confidence 4777766 33 456778889999 56664
No 115
>PF08889 WbqC: WbqC-like protein family; InterPro: IPR014985 This family of proteins are functionally uncharacterised. However, it is found in an O-antigen gene cluster in Escherichia coli [] and other bacteria [] suggesting a role in O-antigen production. It has been suggested that wbnG may code for a glycine transferase [].
Probab=25.04 E-value=2.1e+02 Score=22.59 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=30.7
Q ss_pred HHHHHHHHhHhCCCcEEE-c-CCCCceeEEEEEecCch-HHHHHHHhcCCcEEEEccCC
Q psy2388 96 KDLFHHITRKIGKKPIVI-G-DLNKKIYEIGWCTGAAQ-NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 96 ~~l~~~lk~~l~~~~i~~-~-~~~~~i~rVai~~Gsg~-~~i~~a~~~~~D~~ITGe~k 151 (159)
.+++..+.+.||++.-.. . ..+. -.|.+. .+++.+.+.|||.||+|...
T Consensus 113 ~~~l~~i~~~Lgi~~~i~~sS~l~~-------~~~~~~~~vi~i~~~~ga~~Yi~~~gg 164 (219)
T PF08889_consen 113 EASLEWICDYLGIDTPIVRSSELNL-------PEGKKSERVIDICKALGADTYINGPGG 164 (219)
T ss_pred HHHHHHHHHHhCCCCeEEecccccc-------CCCCchHHHHHHHHHcCCCeeecCccc
Confidence 455667777888764222 1 1111 234444 66777888999999998765
No 116
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=24.91 E-value=1.2e+02 Score=22.78 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=21.0
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
++|.|++|+|. ...+.+.+.|+++.+.+-
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 57888877654 556666778899998763
No 117
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.89 E-value=2e+02 Score=18.59 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=38.5
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhc
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKN 157 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~ 157 (159)
++ ..+..++++.+++.. ..++.|.+.+=.-.....++.+.|++-|++--.+..+...
T Consensus 53 ~~-~~~~~~~~~~i~~~~-----------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~ 109 (112)
T PF00072_consen 53 LP-DGDGLELLEQIRQIN-----------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRA 109 (112)
T ss_dssp SS-SSBHHHHHHHHHHHT-----------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHH
T ss_pred ec-ccccccccccccccc-----------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 44 368889999997764 1233344443333467778889999999998877766544
No 118
>PRK12367 short chain dehydrogenase; Provisional
Probab=24.69 E-value=1.1e+02 Score=24.10 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+...+.|+++++++-
T Consensus 29 ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 29 ALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 566667788999988753
No 119
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=24.51 E-value=55 Score=21.78 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=15.6
Q ss_pred cCCccCHHHHHHHHHhHhCCC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~ 109 (159)
++..-|+.+|.++|.+.++.+
T Consensus 20 ~~~~~t~~~L~~kI~~~l~~~ 40 (80)
T PF11543_consen 20 VSPSSTLSDLKEKISEQLSIP 40 (80)
T ss_dssp E-TTSBHHHHHHHHHHHS---
T ss_pred cCCcccHHHHHHHHHHHcCCC
Confidence 676789999999999999987
No 120
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=24.42 E-value=2.5e+02 Score=21.48 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEcC
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIGD 115 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~~ 115 (159)
.++.++|++.+.+.|+...+.+|.
T Consensus 92 ~lsa~~Fi~~L~~~l~~~~ivvG~ 115 (182)
T smart00764 92 TLDLRIFRKYIAPALGITHRYVGE 115 (182)
T ss_pred cCCHHHHHHHHHHHcCceEEEEcC
Confidence 478899998788889988888863
No 121
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=24.27 E-value=82 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.5
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.+-|++|..+++.+|...|++.++++
T Consensus 42 k~KflVp~~~tv~~f~~~irk~l~l~ 67 (112)
T cd01611 42 KKKYLVPSDLTVGQFVYIIRKRIQLR 67 (112)
T ss_pred CceEEecCCCCHHHHHHHHHHHhCCC
Confidence 45677899999999999999999864
No 122
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=24.11 E-value=1.4e+02 Score=18.21 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=31.6
Q ss_pred cCCccCHHHHHHHHHhHhCCCcE-EEcCCCCceeEEEEEe-cC---chHHHHHHH-hcCCcEEEE
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCT-GA---AQNLLTDAI-NEGVTAYIS 147 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i-~~~~~~~~i~rVai~~-Gs---g~~~i~~a~-~~~~D~~IT 147 (159)
+..+-..+.++++++.. +.+.. .........-||-+.+ .+ .....+.+. ..+.+.+|.
T Consensus 12 ~~~~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~vv 75 (76)
T PF05036_consen 12 FSSEENAERLLAKLKKK-GPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDAFVV 75 (76)
T ss_dssp ES-HHHHHHHHHHHHHH-T-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--EEE
T ss_pred cCCHHHHHHHHHHHHhc-CCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCCEEE
Confidence 55566788999999988 65532 3323355677777733 11 124555555 577777763
No 123
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=23.88 E-value=1.3e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=23.3
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
.|-|=+|-..+-++++.+.|||+|+.|-.
T Consensus 171 ~IeVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 171 LIEVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred EEEEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 35555677778899999999999999964
No 124
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=23.69 E-value=1.7e+02 Score=22.38 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=52.6
Q ss_pred hcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCH---HHHHHHHHhHhCCCc
Q psy2388 34 INKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITI---KDLFHHITRKIGKKP 110 (159)
Q Consensus 34 ~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~---~~l~~~lk~~l~~~~ 110 (159)
..++.+.|.=| |.+- .|.|.=+.|-.- +......+..+|+ |.+|+.. +|-++.+++.+.-+.
T Consensus 24 ~~~iv~lCIGT--DRst----GDsLGPLVGt~L-~~~~~~~~~VyGT--------L~~PVHA~NL~e~l~~I~~~~~~~~ 88 (163)
T PF06866_consen 24 NREIVFLCIGT--DRST----GDSLGPLVGTKL-KEMGFPNFNVYGT--------LDEPVHALNLEETLNEIKKKHPNPF 88 (163)
T ss_pred CCCEEEEEECC--CCCc----cccccchhhHHH-HhcCCCCceEEEC--------CCCCcchhhHHHHHHHHHHHCCCCe
Confidence 67788887765 3332 223332222111 1111123456788 9998765 555555555555453
Q ss_pred -EEEc---CCCCceeEEEEEecC---chHHHHHHHhcCCcEEEEccCCc
Q psy2388 111 -IVIG---DLNKKIYEIGWCTGA---AQNLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 111 -i~~~---~~~~~i~rVai~~Gs---g~~~i~~a~~~~~D~~ITGe~k~ 152 (159)
+.+- ...+.|..|-+.-|. |..+=++...-| |+-|||=+--
T Consensus 89 IIAIDAcLG~~~~vG~I~~~~gpl~PG~gv~K~LP~VG-d~sItGiVn~ 136 (163)
T PF06866_consen 89 IIAIDACLGRPDNVGYITLGNGPLKPGAGVGKKLPPVG-DISITGIVNV 136 (163)
T ss_pred EEEEECCCCCcccceEEEEcCCCCCCchhhCCCCCCCc-CEEEEEEEcC
Confidence 3332 135567777775443 223322333345 8888886543
No 125
>PRK12831 putative oxidoreductase; Provisional
Probab=23.63 E-value=1.7e+02 Score=25.57 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=35.1
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecC--chHHHHHHHhcCCcEEEE
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGA--AQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gs--g~~~i~~a~~~~~D~~IT 147 (159)
+.+|+++.+|-..+.+......... ......-++|+|++|+ |-+....+.+.|.++.|-
T Consensus 108 ~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 108 KGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred CCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 5678888777776665422111122 1123445789998765 335555667788888765
No 126
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.58 E-value=1.2e+02 Score=24.80 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+...+.|++|++++-
T Consensus 29 ~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 29 GLARRLAAAGAEVILPVR 46 (313)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 566666778999998864
No 127
>PRK14057 epimerase; Provisional
Probab=23.46 E-value=1.3e+02 Score=24.56 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.7
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
|.|=+|-..+-++++.+.|||.|+.|-
T Consensus 196 IeVDGGI~~~ti~~l~~aGad~~V~GS 222 (254)
T PRK14057 196 IVIDGSLTQDQLPSLIAQGIDRVVSGS 222 (254)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECh
Confidence 566677777889999999999999994
No 128
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.97 E-value=1.5e+02 Score=18.83 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=13.7
Q ss_pred EEEEEecCc--hHHHHHHHhcCCcEEE
Q psy2388 122 EIGWCTGAA--QNLLTDAINEGVTAYI 146 (159)
Q Consensus 122 rVai~~Gsg--~~~i~~a~~~~~D~~I 146 (159)
||+|++|+- .++...+.+.|.++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtl 27 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTL 27 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEE
Confidence 456665543 2455555666777643
No 129
>PLN02253 xanthoxin dehydrogenase
Probab=22.97 E-value=1.1e+02 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=18.0
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
++++++|+++ .+.+...+.|+.+++++
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~ 49 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVD 49 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 4556665543 55666677899988875
No 130
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.89 E-value=2.5e+02 Score=18.88 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHhHhCCCcEEEcCC-----CCceeEEEEEecCch--HHHHHHHhcCCcEEEE
Q psy2388 99 FHHITRKIGKKPIVIGDL-----NKKIYEIGWCTGAAQ--NLLTDAINEGVTAYIS 147 (159)
Q Consensus 99 ~~~lk~~l~~~~i~~~~~-----~~~i~rVai~~Gsg~--~~i~~a~~~~~D~~IT 147 (159)
++...+.++.+ .|.+. +..+.-|.||+.... ..+..+.+.|.++|+-
T Consensus 39 ~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 39 AEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp HHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEE
Confidence 44557778877 55431 346889999998875 7888999999999875
No 131
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=22.85 E-value=2.3e+02 Score=18.55 Aligned_cols=45 Identities=22% Similarity=0.408 Sum_probs=31.9
Q ss_pred HHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCch---HHHHHHHhcCCcEEEEccCC
Q psy2388 96 KDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQ---NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 96 ~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe~k 151 (159)
.|++..+-+.||...+|-.. .+ |+.. .++ .+.+.|.++-||-|..
T Consensus 22 Ge~ia~~~~~~G~~~iRGSs-~r---------gg~~Alr~~~-~~lk~G~~~~itpDGP 69 (74)
T PF04028_consen 22 GELIARVLERFGFRTIRGSS-SR---------GGARALREML-RALKEGYSIAITPDGP 69 (74)
T ss_pred HHHHHHHHHHcCCCeEEeCC-CC---------cHHHHHHHHH-HHHHCCCeEEEeCCCC
Confidence 79999999999999888641 11 2222 334 3456899999998864
No 132
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=22.72 E-value=1.5e+02 Score=24.65 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=23.9
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccCCchhh
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEISESTK 155 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~ 155 (159)
+.+.+|=-.+-+++.++.|+|+++||-+.|..+
T Consensus 239 leaSGGI~~~ni~~yA~tGvD~Is~gal~~a~~ 271 (284)
T PRK06096 239 LSLAGGINLNTLKNYADCGIRLFITSAPYYAAP 271 (284)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECccccCCC
Confidence 333444445778888999999999999955433
No 133
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=22.72 E-value=98 Score=20.89 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=19.1
Q ss_pred cCCccCHHHHHHHHHhHhCCC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.|..+++.+|.++|+++|+++
T Consensus 17 vp~~~~y~~L~~ki~~kLkl~ 37 (80)
T cd06406 17 VARGLSYATLLQKISSKLELP 37 (80)
T ss_pred cCCCCCHHHHHHHHHHHhCCC
Confidence 677789999999999999994
No 134
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=22.59 E-value=1.1e+02 Score=20.15 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.1
Q ss_pred cCCccCHHHHHHHHHhHhCCC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~ 109 (159)
++..+|+.+|.+++.+.+|++
T Consensus 19 ~~~~~Tv~~lK~kl~~~~G~~ 39 (84)
T cd01789 19 YSRGLTIAELKKKLELVVGTP 39 (84)
T ss_pred cCCCCcHHHHHHHHHHHHCCC
Confidence 677799999999999999986
No 135
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=22.58 E-value=1.9e+02 Score=23.00 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc-hHHHHHHHhcCCcEEEEccCC
Q psy2388 97 DLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA-QNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 97 ~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg-~~~i~~a~~~~~D~~ITGe~k 151 (159)
++++...+.+|+|.+.+.-.... ..- .++.+.+.+.|++.+++||+-
T Consensus 48 ~~~~~qA~algiPl~~~~~~~~~--------e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 48 HLTDLVAEAVGIPLIKLYTSGEE--------EKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred HHHHHHHHHcCCCeEEEEcCCch--------hHHHHHHHHHHHHcCCCEEEECccc
Confidence 77788889999996554211100 001 144555566799999999985
No 136
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.55 E-value=1.1e+02 Score=24.91 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=18.7
Q ss_pred cCchHHHHHHH-hcCCcEEEEccCCchhhh
Q psy2388 128 GAAQNLLTDAI-NEGVTAYISGEISESTKK 156 (159)
Q Consensus 128 Gsg~~~i~~a~-~~~~D~~ITGe~k~~~~~ 156 (159)
|+.+.+.++.. .+.+|+||+++..+-+..
T Consensus 64 ~gS~~l~~qIe~Ga~~D~fiSa~~~~~~~l 93 (258)
T COG0725 64 GGSGALARQIEQGAPADLFISADDAYMDKL 93 (258)
T ss_pred cchHHHHHHHHcCCCcCEEEECCHHHHHHH
Confidence 34444455543 367899999998776544
No 137
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=22.46 E-value=1.6e+02 Score=19.97 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=13.5
Q ss_pred CceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 118 KKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 118 ~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
..+.++.+++-+-.+++....+ | |++||
T Consensus 19 ~~~~~v~v~a~~~~~~~~~~~~-~-~lvIt 46 (105)
T PF07085_consen 19 RRVGKVVVGAMSLSDFLEYLKP-G-DLVIT 46 (105)
T ss_dssp -EESEEEE-SS-HHHHHHCHHT-T-EEEEE
T ss_pred eEEeeEEEEECCHHHHHhhcCC-C-eEEEE
Confidence 3466666655555555544332 3 66666
No 138
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=22.40 E-value=2.2e+02 Score=22.74 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHHHHhHhCCCcEEEc-CCCCceeEEEEEecCc-hHHHHHHHhcCCcEEEEccCC
Q psy2388 97 DLFHHITRKIGKKPIVIG-DLNKKIYEIGWCTGAA-QNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 97 ~l~~~lk~~l~~~~i~~~-~~~~~i~rVai~~Gsg-~~~i~~a~~~~~D~~ITGe~k 151 (159)
++++...+.+|+|.+.+. .... ..- .++.+...+.|+|.+++||+-
T Consensus 48 ~~~~~qA~algipl~~~~~~~~~---------e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 48 HLTDLQAESIGIPLIKLYTEGTE---------EDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred HHHHHHHHHcCCCeEEeecCCCc---------cHHHHHHHHHHHHcCCCEEEECCcc
Confidence 778888899999976542 1110 011 133333345599999999985
No 139
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.37 E-value=51 Score=26.96 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=34.1
Q ss_pred cCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEEc
Q psy2388 35 NKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG 114 (159)
Q Consensus 35 ~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~ 114 (159)
.+..++++|..| .+|++.+||+........+ +. =|.+-.+.++.+.+++. +++++.+.
T Consensus 176 ~~~~~v~~H~af---------~Y~~~~yGl~~~~~~~~~~----~~--------eps~~~l~~l~~~ik~~-~v~~if~e 233 (287)
T cd01137 176 EKRKLVTSEGAF---------SYFAKAYGLKEAYLWPINT----EE--------EGTPKQVATLIEQVKKE-KVPAVFVE 233 (287)
T ss_pred ccCEEEEecccH---------HHHHHHcCCeEeecccCCC----CC--------CCCHHHHHHHHHHHHHh-CCCEEEEe
Confidence 356788888655 4688899998765432110 11 23344556666666643 66666663
No 140
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.15 E-value=2.8e+02 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.2
Q ss_pred hHHHHHHHhcCCcEEEEcc
Q psy2388 131 QNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 131 ~~~i~~a~~~~~D~~ITGe 149 (159)
...++++.+.|||.+|.|-
T Consensus 210 ~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 210 PEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHcCCCEEEECH
Confidence 3677788888999998885
No 141
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=22.15 E-value=1e+02 Score=16.78 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=13.8
Q ss_pred hHHHHHHHhcCCcEEEEcc
Q psy2388 131 QNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 131 ~~~i~~a~~~~~D~~ITGe 149 (159)
.+.++.+.+.|+|-++|=+
T Consensus 10 ~~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHcCCCEeeCCC
Confidence 4567888999999998843
No 142
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=22.06 E-value=79 Score=23.83 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=11.8
Q ss_pred HHHHHHhcCCc-EEEEccCCch
Q psy2388 133 LLTDAINEGVT-AYISGEISES 153 (159)
Q Consensus 133 ~i~~a~~~~~D-~~ITGe~k~~ 153 (159)
+++.+.+.++| +++|||+-++
T Consensus 33 ~~~~~~~~~~d~i~~~GD~~~~ 54 (223)
T cd00840 33 IVELAIEEKVDFVLIAGDLFDS 54 (223)
T ss_pred HHHHHHhcCCCEEEECCcccCC
Confidence 34444555666 5666766543
No 143
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=21.93 E-value=1e+02 Score=20.93 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=20.0
Q ss_pred eEEEEEecCch--HHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAAQ--NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg~--~~i~~a~~~~~D~~ITGe~ 150 (159)
++|.|++|+.. .-++...+.||++.+.+.-
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 57788777653 4466667889998766543
No 144
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=21.88 E-value=4.2e+02 Score=26.50 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCC
Q psy2388 25 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNF 64 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl 64 (159)
...-++.+.+|||.+|+.=+.|---++.-..-..++..|.
T Consensus 627 v~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~ 666 (1143)
T TIGR01235 627 VKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGK 666 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCC
Confidence 5677888899999999997666544443444555555554
No 145
>PRK06484 short chain dehydrogenase; Validated
Probab=21.72 E-value=1.1e+02 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=21.7
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|+++++|+++ .+.+...+.|+.+++++-
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r 301 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDR 301 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 46788887754 566667789999998864
No 146
>PRK06128 oxidoreductase; Provisional
Probab=21.71 E-value=1.3e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=18.2
Q ss_pred EEEEEecC-c---hHHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGA-A---QNLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gs-g---~~~i~~a~~~~~D~~ITG 148 (159)
|.++++|+ | ..+.+...+.|++++++.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNY 86 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 45555554 3 366777778899998874
No 147
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=21.69 E-value=86 Score=20.67 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.4
Q ss_pred cCCccCHHHHHHHHHhHhCCC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~ 109 (159)
++..+|+.+|-++|...+|.+
T Consensus 20 ~~~~~Tv~eLK~kl~~~~Gi~ 40 (87)
T PF14560_consen 20 FPKSITVSELKQKLEKLTGIP 40 (87)
T ss_dssp EETTSBHHHHHHHHHHHHTS-
T ss_pred cCCCCCHHHHHHHHHHHhCCC
Confidence 667799999999999999986
No 148
>PRK06841 short chain dehydrogenase; Provisional
Probab=21.65 E-value=1.4e+02 Score=22.87 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=18.0
Q ss_pred EEEEEecCc---hHHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAA---QNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg---~~~i~~a~~~~~D~~ITGe 149 (159)
+|.|.+|+| ..+.+...+.|+.+++++-
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 444444444 3666677788999888763
No 149
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=21.62 E-value=1.6e+02 Score=24.19 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=32.9
Q ss_pred cCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc--hHHHHHHHhcCCcEEEEccCCch
Q psy2388 93 ITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA--QNLLTDAINEGVTAYISGEISES 153 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg--~~~i~~a~~~~~D~~ITGe~k~~ 153 (159)
..+.+.+..|++.++.+.+..+..+. +.|.| ....++..+.|+|++=+|+-.|.
T Consensus 13 ~~v~~~Lp~L~~~~~~DfVIaNgENa-------a~G~Git~~~~~~L~~~GvDviT~GNH~wd 68 (253)
T PF13277_consen 13 RAVKEHLPELKEEYGIDFVIANGENA-------AGGFGITPKIAEELFKAGVDVITMGNHIWD 68 (253)
T ss_dssp HHHHHHHHHHGG--G-SEEEEE-TTT-------TTTSS--HHHHHHHHHHT-SEEE--TTTTS
T ss_pred HHHHHHHHHHHhhcCCCEEEECCccc-------CCCCCCCHHHHHHHHhcCCCEEecCccccc
Confidence 35678888999999988777742222 23555 36677778889999999986654
No 150
>PRK04148 hypothetical protein; Provisional
Probab=21.55 E-value=3.4e+02 Score=19.95 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=24.9
Q ss_pred HHHHHHHHhHhCCCcEEEcCCCCceeEEEE-EecCchHHHHHHHhcCCcEEEE
Q psy2388 96 KDLFHHITRKIGKKPIVIGDLNKKIYEIGW-CTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 96 ~~l~~~lk~~l~~~~i~~~~~~~~i~rVai-~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
+++++.|.+.+.. .+ -+||.. ..|+|.++-....+.|.|+.-+
T Consensus 2 ~~i~~~l~~~~~~--------~~-~~kileIG~GfG~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 2 DTIAEFIAENYEK--------GK-NKKIVELGIGFYFKVAKKLKESGFDVIVI 45 (134)
T ss_pred hHHHHHHHHhccc--------cc-CCEEEEEEecCCHHHHHHHHHCCCEEEEE
Confidence 4566666665421 11 134444 5678876666667788887644
No 151
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=21.44 E-value=2.2e+02 Score=24.10 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHHHHHHHh
Q psy2388 25 KKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITR 104 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~ 104 (159)
..+.+..+...++-++...++-. -...++.+|......-+.+.=|..|. .+.+.++..|+..+.+
T Consensus 116 ~~~~i~~~~~~g~~v~~~v~~~~-------~A~~~~~~G~d~vI~~g~eAGGH~g~--------~~~~~~t~~Lv~ev~~ 180 (336)
T COG2070 116 PAEFVARLKAAGIKVIHSVITVR-------EALKAERAGADAVIAQGAEAGGHRGG--------VDLEVSTFALVPEVVD 180 (336)
T ss_pred cHHHHHHHHHcCCeEEEEeCCHH-------HHHHHHhCCCCEEEecCCcCCCcCCC--------CCCCccHHHHHHHHHH
Confidence 45666666666666665554432 22344455555433322222344443 2345688999999999
Q ss_pred HhC-CCcEEEc
Q psy2388 105 KIG-KKPIVIG 114 (159)
Q Consensus 105 ~l~-~~~i~~~ 114 (159)
.+. +|++--|
T Consensus 181 ~~~~iPViAAG 191 (336)
T COG2070 181 AVDGIPVIAAG 191 (336)
T ss_pred HhcCCCEEEec
Confidence 998 6776654
No 152
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=21.21 E-value=1.3e+02 Score=24.05 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=17.8
Q ss_pred eEEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
.||+|.+ .| +..++|.+.||| |+.||
T Consensus 71 ~kV~Vfa-~~-~~~~~Ak~aGa~-~vg~~ 96 (227)
T TIGR01169 71 VRVAVFA-KG-EKAEEAKAAGAD-YVGSD 96 (227)
T ss_pred cEEEEEc-Cc-hhHHHHHHcCCC-EeCHH
Confidence 4777765 33 457788889999 55554
No 153
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=21.14 E-value=2.8e+02 Score=18.83 Aligned_cols=43 Identities=7% Similarity=0.214 Sum_probs=24.2
Q ss_pred cCCccCH-------HHHHHHHHhHhCCCcEEEcCCC--C-ceeEEEEEecCch
Q psy2388 89 FKKIITI-------KDLFHHITRKIGKKPIVIGDLN--K-KIYEIGWCTGAAQ 131 (159)
Q Consensus 89 l~~~~~~-------~~l~~~lk~~l~~~~i~~~~~~--~-~i~rVai~~Gsg~ 131 (159)
+|..-|+ .-+.++++++||+.+..++..+ + ..=-||+++++..
T Consensus 11 lp~~~SLKeKR~vvksl~~klr~rfnvSvaEv~~~D~~q~a~lg~a~vs~~~~ 63 (90)
T PF04456_consen 11 LPGAHSLKEKRQVVKSLIDKLRNRFNVSVAEVGHQDSWQRAVLGFAVVSNSRA 63 (90)
T ss_dssp ----SSHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT-SSEEEEEEEEEES-HH
T ss_pred eccccchhHhHHHHHHHHHHHHhhCCeEEEEecCCCcccEEEEEEEEEECCHH
Confidence 5655565 5689999999998888886432 2 2334566666664
No 154
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=21.08 E-value=2.4e+02 Score=19.68 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+-|.+.++|+.|-|-
T Consensus 53 ~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 53 ELADFAKENKIDLVVVGP 70 (100)
T ss_dssp HHHHHHHHTTESEEEESS
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 677778889999988773
No 155
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.04 E-value=4.6e+02 Score=21.29 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCccEEEeccCCCCCC-CCCHHH---HHHHHcCCccccc
Q psy2388 24 IKKKRLEQLIINKINLYAYHLPLDMHP-KLGNNA---QLAKILNFSCTRR 69 (159)
Q Consensus 24 ~~~~~~~~l~~~~I~vy~~Ht~lD~~~-~~G~n~---~La~~Lgl~~~~~ 69 (159)
...+++..+.+|||-+|.=.|-+...- . |.-+ ..|+.||++..+.
T Consensus 42 ~l~eki~la~~~~V~v~~GGtl~E~~~~q-~~~~~Yl~~~k~lGf~~IEi 90 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPGGTLFEIAHSK-GKFDEYLNECDELGFEAVEI 90 (237)
T ss_pred HHHHHHHHHHHcCCeEeCCccHHHHHHHh-hhHHHHHHHHHHcCCCEEEE
Confidence 468999999999999998887777542 2 2222 2566777766543
No 156
>PLN02846 digalactosyldiacylglycerol synthase
Probab=21.01 E-value=1.2e+02 Score=27.01 Aligned_cols=39 Identities=8% Similarity=-0.120 Sum_probs=25.3
Q ss_pred CccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCC
Q psy2388 2 NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDM 48 (159)
Q Consensus 2 ~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~ 48 (159)
+.|+|.+|.|+...- ...-.....+.++.|.++||+++.
T Consensus 116 ~pDVIHv~tP~~LG~--------~~~g~~~~~k~~~vV~tyHT~y~~ 154 (462)
T PLN02846 116 EADIAVLEEPEHLTW--------YHHGKRWKTKFRLVIGIVHTNYLE 154 (462)
T ss_pred CCCEEEEcCchhhhh--------HHHHHHHHhcCCcEEEEECCChHH
Confidence 467888888875532 101223456668888899998864
No 157
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=21.00 E-value=1e+02 Score=22.42 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=22.4
Q ss_pred cccc-ccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRY-NFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~-~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
++.| ++|..+|+.+|..-|++.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~ 67 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTS 67 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCC
Confidence 4457 5899999999999999999875
No 158
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.74 E-value=1.1e+02 Score=25.31 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCccEEEeccC-CCCCCC---CCHH--HHHHHHcCCccccccccCCeeeEEEEccccccccCCccC---H
Q psy2388 25 KKKRLEQLIINKINLYAYHLP-LDMHPK---LGNN--AQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIIT---I 95 (159)
Q Consensus 25 ~~~~~~~l~~~~I~vy~~Ht~-lD~~~~---~G~n--~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~---~ 95 (159)
+++.++.+..-++..-...-. .|.-|. .|+. ..||+++-++..-.+..++. .| ++ |++ +
T Consensus 117 p~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt--sG---------LD-PI~a~~~ 184 (263)
T COG1127 117 PESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT--SG---------LD-PISAGVI 184 (263)
T ss_pred CHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC--CC---------CC-cchHHHH
Confidence 456667777666776666666 555442 2553 56788887776544332221 11 33 444 5
Q ss_pred HHHHHHHHhHhCCCcEEEc-CC---CCceeEEEEEec
Q psy2388 96 KDLFHHITRKIGKKPIVIG-DL---NKKIYEIGWCTG 128 (159)
Q Consensus 96 ~~l~~~lk~~l~~~~i~~~-~~---~~~i~rVai~~G 128 (159)
++|+.++++.+++.++.+. |. .....||++..-
T Consensus 185 ~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~ 221 (263)
T COG1127 185 DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221 (263)
T ss_pred HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC
Confidence 8899999999999988885 32 223478888653
No 159
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=20.74 E-value=4.3e+02 Score=20.83 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
|.+-+|-..+-+.++.+.|||.++.|-
T Consensus 170 I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 170 LEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 445555566788888999999998874
No 160
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=20.66 E-value=1.6e+02 Score=23.11 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=29.7
Q ss_pred HHHHHHHhHhCCCcEEEc-CC--CCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCc
Q psy2388 97 DLFHHITRKIGKKPIVIG-DL--NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 97 ~l~~~lk~~l~~~~i~~~-~~--~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~ 152 (159)
+.++++.+.+|+|...+. +. +..... =...+.++.+.|++.+++|++.-
T Consensus 46 ~~~~~~A~~lgip~~~i~~~~~~~~~~~~-------l~~~l~~~~~~g~~~vv~G~i~s 97 (218)
T TIGR03679 46 ELTRLQAEALGIPLVKIETSGEKEKEVED-------LKGALKELKREGVEGIVTGAIAS 97 (218)
T ss_pred HHHHHHHHHhCCCEEEEECCCCChHHHHH-------HHHHHHHHHHcCCCEEEECCccc
Confidence 667788888999865552 21 111100 11335555556999999999864
No 161
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=20.63 E-value=1.7e+02 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=20.5
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
|++.+|=..+-++++.+.|+|.++-|-
T Consensus 173 i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 173 IEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 455556566778888889999998874
No 162
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.51 E-value=93 Score=19.16 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=11.9
Q ss_pred cccCCccCHHHHHHHH
Q psy2388 87 YNFKKIITIKDLFHHI 102 (159)
Q Consensus 87 ~~l~~~~~~~~l~~~l 102 (159)
|..|..++++||++.+
T Consensus 18 fd~PR~~tl~elA~~l 33 (53)
T PF04967_consen 18 FDVPRRITLEELAEEL 33 (53)
T ss_pred CCCCCcCCHHHHHHHh
Confidence 3378889999988744
No 163
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.34 E-value=1.5e+02 Score=23.01 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCcEEEEc
Q psy2388 132 NLLTDAINEGVTAYISG 148 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITG 148 (159)
.+.+...++|+++++++
T Consensus 33 ~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 33 ATARRALEEGARVVISD 49 (262)
T ss_pred HHHHHHHHcCCEEEEEe
Confidence 56667778899988875
No 164
>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.
Probab=20.25 E-value=1.9e+02 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=17.7
Q ss_pred HHHHHHHcCCccccccccCCeeeEEE
Q psy2388 55 NAQLAKILNFSCTRRFSKNNIGWIGK 80 (159)
Q Consensus 55 n~~La~~Lgl~~~~~~~~~~~g~ig~ 80 (159)
...+|+.||++..+.+. -+.|.||+
T Consensus 84 ~~~~A~~l~i~~~~Vlv-aSTGVIG~ 108 (390)
T cd02152 84 AELVAELLGIPEEEVLV-ASTGVIGE 108 (390)
T ss_pred HHHHHHHhCCCcccEEE-eCchhccC
Confidence 46788999987766543 45677776
No 165
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.19 E-value=1.6e+02 Score=22.35 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=22.5
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
+|++.+|-..+-++++.+.|+|.++.|..
T Consensus 160 ~i~v~GGI~~~n~~~~~~~Ga~~v~vGsa 188 (206)
T TIGR03128 160 RVAVAGGINLDTIPDVIKLGPDIVIVGGA 188 (206)
T ss_pred cEEEECCcCHHHHHHHHHcCCCEEEEeeh
Confidence 46666666667788889999999988754
Done!