Query psy2388
Match_columns 159
No_of_seqs 138 out of 1027
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:42:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyw_A Conserved hypothetical 100.0 1.7E-47 5.8E-52 310.8 11.0 149 1-159 58-216 (267)
2 1nmo_A Hypothetical protein YB 100.0 5.4E-47 1.9E-51 304.9 11.9 148 1-159 55-204 (247)
3 2nyd_A UPF0135 protein SA1388; 100.0 1.2E-46 4.1E-51 317.8 11.2 148 1-158 60-318 (370)
4 2gx8_A NIF3-related protein; s 100.0 1.9E-46 6.5E-51 318.8 11.2 149 1-158 84-345 (397)
5 2yyb_A Hypothetical protein TT 100.0 9.2E-47 3.1E-51 302.8 5.8 143 1-159 56-199 (242)
6 3rxy_A NIF3 protein; structura 99.6 4.1E-16 1.4E-20 125.5 1.5 99 36-158 129-238 (278)
7 2fyw_A Conserved hypothetical 96.2 0.012 4E-07 47.0 7.0 55 93-147 3-65 (267)
8 1nmo_A Hypothetical protein YB 95.4 0.054 1.8E-06 42.6 7.7 54 93-147 1-62 (247)
9 2nyd_A UPF0135 protein SA1388; 95.2 0.037 1.3E-06 46.3 6.4 56 92-147 4-67 (370)
10 2gx8_A NIF3-related protein; s 94.9 0.055 1.9E-06 45.7 6.7 56 92-147 28-91 (397)
11 2yyb_A Hypothetical protein TT 93.6 0.091 3.1E-06 41.2 5.0 52 94-147 2-63 (242)
12 3rxy_A NIF3 protein; structura 91.7 0.68 2.3E-05 37.2 7.7 54 92-147 6-65 (278)
13 4fgs_A Probable dehydrogenase 78.3 1.7 5.9E-05 34.4 3.6 29 121-149 29-61 (273)
14 1vp8_A Hypothetical protein AF 63.3 20 0.00068 27.3 6.2 53 3-63 67-120 (201)
15 2cu1_A Mitogen-activated prote 63.2 12 0.00042 25.4 4.5 27 89-115 24-51 (103)
16 2bkf_A Zinc-finger protein NBR 56.0 19 0.00064 23.8 4.4 23 91-113 26-48 (87)
17 2jrh_A Mitogen-activated prote 53.9 15 0.00051 24.5 3.6 26 89-114 20-46 (94)
18 3p19_A BFPVVD8, putative blue 53.7 12 0.00039 28.7 3.6 29 121-149 16-48 (266)
19 3sju_A Keto reductase; short-c 53.1 12 0.00039 28.9 3.6 29 121-149 24-56 (279)
20 4dyv_A Short-chain dehydrogena 52.8 10 0.00035 29.2 3.2 29 121-149 28-60 (272)
21 4da9_A Short-chain dehydrogena 52.3 12 0.00041 28.8 3.5 28 121-148 29-60 (280)
22 3v8b_A Putative dehydrogenase, 51.3 13 0.00043 28.8 3.6 29 121-149 28-60 (283)
23 3v2h_A D-beta-hydroxybutyrate 51.0 14 0.00047 28.5 3.7 28 122-149 26-57 (281)
24 4dry_A 3-oxoacyl-[acyl-carrier 50.7 11 0.00039 29.0 3.2 29 121-149 33-65 (281)
25 3uf0_A Short-chain dehydrogena 50.3 13 0.00046 28.5 3.5 29 121-149 31-63 (273)
26 4fc7_A Peroxisomal 2,4-dienoyl 50.0 13 0.00045 28.4 3.4 29 121-149 27-59 (277)
27 2c60_A Human mitogen-activated 49.9 18 0.00062 24.7 3.6 26 89-114 47-73 (111)
28 3ppi_A 3-hydroxyacyl-COA dehyd 49.5 17 0.00057 27.7 4.0 29 121-149 30-62 (281)
29 3ftp_A 3-oxoacyl-[acyl-carrier 48.1 12 0.00042 28.6 3.0 29 121-149 28-60 (270)
30 3pgx_A Carveol dehydrogenase; 47.8 16 0.00054 27.9 3.6 27 122-148 16-46 (280)
31 3r1i_A Short-chain type dehydr 47.7 16 0.00054 28.1 3.6 28 122-149 33-64 (276)
32 3t7c_A Carveol dehydrogenase; 47.0 16 0.00055 28.3 3.6 29 121-149 28-60 (299)
33 4ibo_A Gluconate dehydrogenase 46.9 13 0.00044 28.5 2.9 28 122-149 27-58 (271)
34 4dqx_A Probable oxidoreductase 46.7 15 0.00052 28.2 3.3 29 121-149 27-59 (277)
35 3uxy_A Short-chain dehydrogena 46.5 14 0.00048 28.2 3.1 28 122-149 29-60 (266)
36 3orf_A Dihydropteridine reduct 46.3 17 0.00059 27.3 3.5 30 121-150 22-55 (251)
37 4imr_A 3-oxoacyl-(acyl-carrier 46.3 15 0.00051 28.2 3.2 28 122-149 34-65 (275)
38 3un1_A Probable oxidoreductase 46.2 16 0.00054 27.8 3.3 28 122-149 29-60 (260)
39 4egf_A L-xylulose reductase; s 46.1 15 0.00052 27.9 3.2 28 122-149 21-52 (266)
40 3rd5_A Mypaa.01249.C; ssgcid, 45.9 17 0.00059 27.9 3.6 28 122-149 17-48 (291)
41 1vl8_A Gluconate 5-dehydrogena 45.9 17 0.0006 27.6 3.5 29 121-149 21-53 (267)
42 2npt_B Mitogen-activated prote 45.9 24 0.00081 23.8 3.6 25 89-113 36-61 (100)
43 3rih_A Short chain dehydrogena 45.6 15 0.00052 28.6 3.2 29 121-149 41-73 (293)
44 3gem_A Short chain dehydrogena 45.5 14 0.00046 28.2 2.9 30 122-151 28-61 (260)
45 3rkr_A Short chain oxidoreduct 45.4 17 0.00057 27.5 3.3 28 122-149 30-61 (262)
46 3gk3_A Acetoacetyl-COA reducta 45.2 15 0.00052 27.8 3.1 28 121-148 25-56 (269)
47 3gvc_A Oxidoreductase, probabl 44.9 16 0.00055 28.1 3.2 29 121-149 29-61 (277)
48 2re2_A Uncharacterized protein 44.6 13 0.00046 25.9 2.5 22 125-147 84-105 (136)
49 3kts_A Glycerol uptake operon 44.6 37 0.0013 25.5 5.0 32 125-156 153-187 (192)
50 1rdu_A Conserved hypothetical 44.4 11 0.00037 25.3 1.9 26 128-153 49-74 (116)
51 3ijr_A Oxidoreductase, short c 44.3 19 0.00064 27.8 3.5 30 121-150 47-80 (291)
52 4dmm_A 3-oxoacyl-[acyl-carrier 43.8 17 0.00059 27.7 3.2 29 121-149 28-60 (269)
53 1tqx_A D-ribulose-5-phosphate 43.5 24 0.00081 27.0 3.9 29 122-150 175-203 (227)
54 4iin_A 3-ketoacyl-acyl carrier 43.5 17 0.0006 27.5 3.2 29 122-150 30-62 (271)
55 3v2g_A 3-oxoacyl-[acyl-carrier 43.3 20 0.00069 27.4 3.5 28 122-149 32-63 (271)
56 3qlj_A Short chain dehydrogena 43.3 18 0.00063 28.3 3.4 28 121-148 27-58 (322)
57 2nwq_A Probable short-chain de 43.3 20 0.00067 27.5 3.5 28 122-149 22-53 (272)
58 3grp_A 3-oxoacyl-(acyl carrier 42.8 19 0.00066 27.4 3.3 29 121-149 27-59 (266)
59 2x9g_A PTR1, pteridine reducta 42.7 16 0.00054 28.1 2.8 29 122-150 24-56 (288)
60 1t57_A Conserved protein MTH16 42.6 54 0.0018 25.0 5.6 52 4-63 75-127 (206)
61 3r3s_A Oxidoreductase; structu 42.4 22 0.00077 27.4 3.7 29 121-149 49-81 (294)
62 2b4q_A Rhamnolipids biosynthes 42.4 23 0.00078 27.1 3.7 28 122-149 30-61 (276)
63 2rhc_B Actinorhodin polyketide 42.2 21 0.00071 27.3 3.4 27 122-148 23-53 (277)
64 3is3_A 17BETA-hydroxysteroid d 41.9 20 0.00069 27.2 3.3 29 121-149 18-50 (270)
65 3tjr_A Short chain dehydrogena 41.8 22 0.00074 27.6 3.5 28 122-149 32-63 (301)
66 3u5t_A 3-oxoacyl-[acyl-carrier 41.5 20 0.00069 27.3 3.3 28 121-148 27-58 (267)
67 1ae1_A Tropinone reductase-I; 41.4 23 0.00078 26.9 3.6 28 122-149 22-53 (273)
68 2nxf_A Putative dimetal phosph 40.0 47 0.0016 25.0 5.2 44 5-48 224-270 (322)
69 2qhx_A Pteridine reductase 1; 39.6 21 0.00072 28.2 3.2 27 122-148 47-77 (328)
70 2nm0_A Probable 3-oxacyl-(acyl 39.5 25 0.00086 26.5 3.5 28 122-149 22-53 (253)
71 3oec_A Carveol dehydrogenase ( 39.5 23 0.00077 27.8 3.3 28 121-148 46-77 (317)
72 3grk_A Enoyl-(acyl-carrier-pro 39.4 21 0.00071 27.7 3.1 29 121-149 31-65 (293)
73 1eo1_A Hypothetical protein MT 39.4 22 0.00077 24.0 2.9 21 132-152 56-76 (124)
74 3to5_A CHEY homolog; alpha(5)b 39.3 90 0.0031 21.3 6.8 53 88-151 66-119 (134)
75 3ovp_A Ribulose-phosphate 3-ep 39.1 21 0.00071 27.2 3.0 28 122-149 171-198 (228)
76 3inp_A D-ribulose-phosphate 3- 39.1 23 0.00078 27.5 3.2 28 122-149 197-224 (246)
77 3o38_A Short chain dehydrogena 38.9 24 0.00083 26.4 3.3 29 121-149 22-55 (266)
78 1g0o_A Trihydroxynaphthalene r 38.9 23 0.00077 27.0 3.2 29 122-150 30-62 (283)
79 3kvo_A Hydroxysteroid dehydrog 38.5 24 0.00083 28.3 3.4 30 121-150 45-78 (346)
80 1xhl_A Short-chain dehydrogena 38.3 23 0.00079 27.4 3.2 28 122-149 27-58 (297)
81 3cxt_A Dehydrogenase with diff 38.2 27 0.00091 27.0 3.5 28 122-149 35-66 (291)
82 3tgh_A Glideosome-associated p 38.1 29 0.00099 28.1 3.8 43 5-47 194-237 (342)
83 2p10_A MLL9387 protein; putati 37.9 67 0.0023 25.7 5.8 45 92-147 10-54 (286)
84 3s8m_A Enoyl-ACP reductase; ro 37.0 23 0.00077 29.9 3.1 28 121-148 61-93 (422)
85 3k31_A Enoyl-(acyl-carrier-pro 36.8 29 0.00099 26.8 3.6 30 121-150 30-65 (296)
86 1uzm_A 3-oxoacyl-[acyl-carrier 36.5 26 0.0009 26.1 3.2 28 122-149 16-47 (247)
87 1wj6_A KIAA0049 protein, RSGI 36.3 21 0.00072 24.2 2.3 24 90-113 33-56 (101)
88 1o5i_A 3-oxoacyl-(acyl carrier 35.9 38 0.0013 25.3 4.0 27 122-148 20-50 (249)
89 4e5v_A Putative THUA-like prot 35.9 60 0.0021 25.4 5.3 39 22-63 72-110 (281)
90 2p91_A Enoyl-[acyl-carrier-pro 35.6 31 0.0011 26.3 3.5 28 122-149 22-55 (285)
91 1ute_A Protein (II purple acid 34.9 38 0.0013 25.5 3.9 43 4-46 181-224 (313)
92 3k6v_A Solute-binding protein 34.9 46 0.0016 27.0 4.6 30 127-156 77-108 (354)
93 2et6_A (3R)-hydroxyacyl-COA de 34.3 30 0.001 30.1 3.5 28 121-148 322-353 (604)
94 3nek_A Nitrogen repressor-like 34.2 94 0.0032 24.1 6.0 54 92-145 158-219 (238)
95 4e3z_A Putative oxidoreductase 34.1 30 0.001 26.1 3.2 28 121-148 26-57 (272)
96 3zu3_A Putative reductase YPO4 33.8 27 0.00094 29.2 3.1 28 121-148 47-79 (405)
97 2ioj_A Hypothetical protein AF 33.2 88 0.003 21.3 5.3 56 92-151 7-63 (139)
98 2jz7_A Selenium binding protei 32.7 86 0.0029 20.3 4.7 37 117-153 17-60 (81)
99 3e8x_A Putative NAD-dependent 32.6 44 0.0015 24.3 3.9 29 121-149 22-53 (236)
100 1xg5_A ARPG836; short chain de 32.6 45 0.0015 25.1 4.0 28 122-149 33-64 (279)
101 3kn3_A Putative periplasmic pr 32.3 31 0.0011 26.7 3.0 32 123-154 36-67 (242)
102 3muq_A Uncharacterized conserv 31.8 32 0.0011 26.4 3.0 33 123-155 36-68 (237)
103 3ctm_A Carbonyl reductase; alc 31.6 28 0.00096 26.2 2.6 28 122-149 35-66 (279)
104 3i1j_A Oxidoreductase, short c 31.2 40 0.0014 24.8 3.4 18 132-149 29-46 (247)
105 3f9i_A 3-oxoacyl-[acyl-carrier 31.0 36 0.0012 25.1 3.1 29 121-149 15-46 (249)
106 2bgk_A Rhizome secoisolaricire 30.8 51 0.0017 24.6 4.0 28 122-149 17-48 (278)
107 2qyx_A Uncharacterized protein 30.8 1.1E+02 0.0039 23.6 6.0 54 92-145 158-219 (238)
108 3gdg_A Probable NADP-dependent 30.7 34 0.0011 25.6 2.9 29 122-150 21-55 (267)
109 3ka5_A Ribosome-associated pro 30.6 97 0.0033 19.1 5.1 40 84-125 5-45 (65)
110 1yb1_A 17-beta-hydroxysteroid 30.4 49 0.0017 24.9 3.9 27 122-148 32-62 (272)
111 1j27_A Hypothetical protein TT 29.5 1.2E+02 0.0041 20.2 5.2 42 89-131 14-65 (102)
112 3ctl_A D-allulose-6-phosphate 29.3 37 0.0013 25.9 3.0 26 123-148 170-195 (231)
113 1h5q_A NADP-dependent mannitol 29.3 47 0.0016 24.5 3.5 28 122-149 16-46 (265)
114 4gdk_A Ubiquitin-like protein 29.1 30 0.001 22.7 2.1 26 84-109 21-46 (91)
115 3w1s_C Ubiquitin-like protein 29.0 32 0.0011 22.7 2.2 30 84-113 24-53 (91)
116 1eo1_A Hypothetical protein MT 28.8 47 0.0016 22.3 3.1 29 123-151 68-96 (124)
117 1w6u_A 2,4-dienoyl-COA reducta 28.8 54 0.0018 24.9 3.9 28 122-149 27-58 (302)
118 3nrc_A Enoyl-[acyl-carrier-pro 28.5 48 0.0016 25.1 3.5 29 122-150 27-61 (280)
119 4hdr_B ARSB; transferase; HET: 28.5 28 0.00097 28.6 2.2 22 130-151 152-173 (350)
120 3vtz_A Glucose 1-dehydrogenase 28.2 47 0.0016 25.2 3.4 18 132-149 29-46 (269)
121 3cfz_A UPF0100 protein MJ1186; 28.1 75 0.0025 24.1 4.6 30 125-154 37-68 (292)
122 2zat_A Dehydrogenase/reductase 27.7 50 0.0017 24.6 3.4 18 132-149 29-46 (260)
123 1dd4_C 50S ribosomal protein L 27.6 47 0.0016 18.5 2.4 16 95-110 18-33 (40)
124 3lr1_A Tungstate ABC transport 27.5 43 0.0015 25.7 3.1 32 123-154 36-67 (236)
125 4iiu_A 3-oxoacyl-[acyl-carrier 27.4 48 0.0016 24.9 3.3 27 122-148 27-57 (267)
126 1lu9_A Methylene tetrahydromet 26.9 61 0.0021 24.9 3.9 28 122-149 120-151 (287)
127 1yxm_A Pecra, peroxisomal tran 26.9 61 0.0021 24.6 3.9 28 122-149 19-50 (303)
128 1xu9_A Corticosteroid 11-beta- 26.8 52 0.0018 24.9 3.4 28 122-149 29-60 (286)
129 1wz3_A Autophagy 12B, ATG12B, 26.6 28 0.00095 23.2 1.6 31 83-113 28-58 (96)
130 1uf3_A Hypothetical protein TT 26.5 81 0.0028 22.4 4.3 40 3-45 150-190 (228)
131 3oml_A GH14720P, peroxisomal m 26.3 39 0.0013 29.4 2.9 28 121-148 19-50 (613)
132 3rjz_A N-type ATP pyrophosphat 26.0 51 0.0017 25.4 3.2 106 27-149 19-147 (237)
133 1tvm_A PTS system, galactitol- 25.7 1.1E+02 0.0039 20.2 4.7 14 118-131 19-32 (113)
134 3cfx_A UPF0100 protein MA_0280 25.7 95 0.0033 23.6 4.8 29 126-154 38-68 (296)
135 1pqw_A Polyketide synthase; ro 25.6 46 0.0016 23.7 2.8 29 121-149 40-71 (198)
136 3lyv_A Ribosome-associated fac 25.3 1.3E+02 0.0043 18.6 4.4 41 83-125 5-46 (66)
137 1ja9_A 4HNR, 1,3,6,8-tetrahydr 25.1 53 0.0018 24.4 3.1 28 122-149 22-53 (274)
138 2re2_A Uncharacterized protein 24.7 57 0.0019 22.6 3.0 21 132-152 70-90 (136)
139 3gl9_A Response regulator; bet 24.4 1.4E+02 0.0047 18.8 6.5 55 89-154 56-111 (122)
140 1xzw_A Purple acid phosphatase 24.3 1.1E+02 0.0039 24.7 5.2 44 4-47 280-326 (426)
141 3ek2_A Enoyl-(acyl-carrier-pro 24.2 62 0.0021 24.0 3.4 29 121-149 15-48 (271)
142 4dup_A Quinone oxidoreductase; 24.2 59 0.002 25.7 3.4 28 121-148 169-199 (353)
143 1xq1_A Putative tropinone redu 24.2 56 0.0019 24.2 3.1 18 132-149 29-46 (266)
144 2pjh_A Protein NPL4, nuclear p 24.1 74 0.0025 19.9 3.2 22 88-109 19-40 (80)
145 2yx6_A Hypothetical protein PH 24.0 43 0.0015 22.4 2.2 13 138-150 60-72 (121)
146 4hdr_A ARSA; transferase; HET: 23.5 32 0.0011 28.3 1.6 22 130-151 159-180 (348)
147 3fdx_A Putative filament prote 23.5 39 0.0013 22.3 1.9 26 125-150 89-115 (143)
148 3fbg_A Putative arginate lyase 23.4 84 0.0029 24.6 4.2 29 121-149 152-183 (346)
149 2bka_A CC3, TAT-interacting pr 23.2 77 0.0026 22.9 3.7 27 122-148 20-51 (242)
150 3ib7_A ICC protein; metallopho 23.2 88 0.003 23.8 4.2 45 4-48 176-224 (330)
151 3d03_A Phosphohydrolase; glyce 23.2 1.1E+02 0.0036 22.5 4.5 46 3-48 150-200 (274)
152 3m95_A Autophagy related prote 23.0 46 0.0016 23.3 2.2 25 85-109 55-79 (125)
153 2wfb_A Putative uncharacterize 22.9 60 0.002 21.6 2.8 12 139-150 65-76 (120)
154 1o13_A Probable NIFB protein; 22.9 50 0.0017 22.9 2.4 21 126-146 82-102 (136)
155 3rui_B Autophagy-related prote 22.7 47 0.0016 22.9 2.2 26 84-109 48-73 (118)
156 3rku_A Oxidoreductase YMR226C; 22.6 47 0.0016 25.5 2.5 27 122-148 34-67 (287)
157 1rpn_A GDP-mannose 4,6-dehydra 22.5 82 0.0028 24.0 3.9 33 117-149 11-46 (335)
158 1h1y_A D-ribulose-5-phosphate 22.5 60 0.0021 24.2 3.0 27 123-149 176-202 (228)
159 4eue_A Putative reductase CA_C 22.2 52 0.0018 27.4 2.8 29 121-149 60-94 (418)
160 2c07_A 3-oxoacyl-(acyl-carrier 21.7 76 0.0026 24.0 3.5 27 122-148 45-75 (285)
161 1v3u_A Leukotriene B4 12- hydr 21.7 91 0.0031 24.2 4.0 28 121-148 147-177 (333)
162 2xmo_A LMO2642 protein; phosph 21.4 1.3E+02 0.0044 24.3 5.0 44 5-48 239-286 (443)
163 3tnj_A Universal stress protei 21.2 1.8E+02 0.0062 19.0 5.3 28 125-152 92-120 (150)
164 2bru_C NAD(P) transhydrogenase 21.2 1.7E+02 0.0058 21.8 5.0 37 24-61 49-86 (186)
165 4id9_A Short-chain dehydrogena 20.9 80 0.0027 24.2 3.5 31 118-148 17-50 (347)
166 1pqs_A Cell division control p 20.9 55 0.0019 20.8 2.1 21 89-109 8-28 (77)
167 3o4f_A Spermidine synthase; am 20.9 77 0.0026 25.2 3.4 22 119-140 83-104 (294)
168 2r25_B Osmosensing histidine p 20.8 1.1E+02 0.0037 19.7 3.7 54 89-154 62-116 (133)
169 1eix_A Orotidine 5'-monophosph 20.8 59 0.002 24.7 2.7 28 122-149 184-222 (245)
170 3cu2_A Ribulose-5-phosphate 3- 20.7 93 0.0032 23.8 3.8 29 122-150 189-219 (237)
171 1vd2_A Protein kinase C, IOTA 20.7 74 0.0025 20.8 2.7 45 89-139 22-72 (89)
172 3h9d_A ATG8, microtubule-assoc 20.6 56 0.0019 22.6 2.2 26 84-109 49-74 (119)
173 1p90_A NAFY protein, hypotheti 20.6 96 0.0033 21.7 3.6 25 123-147 70-94 (145)
174 3r26_A Molybdate-binding perip 20.5 65 0.0022 23.8 2.8 29 126-154 39-68 (237)
175 2zjd_A Microtubule-associated 20.3 54 0.0018 23.0 2.1 26 84-109 54-79 (130)
176 3lte_A Response regulator; str 20.2 1E+02 0.0034 19.5 3.4 53 93-155 63-115 (132)
No 1
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=100.00 E-value=1.7e-47 Score=310.80 Aligned_cols=149 Identities=23% Similarity=0.403 Sum_probs=136.7
Q ss_pred CCccEEEEcCCCCccCCCCC-ccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc----CCe
Q psy2388 1 MNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK----NNI 75 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~-~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~----~~~ 75 (159)
++|||||||||+||++.++. ..+++++++.+|++|||+|||+|||||++++ |+|++||+.|||++.+++.+ .++
T Consensus 58 ~gadlIitHHP~~f~~~~~~~~~~~~~~~i~~li~~~I~lya~Ht~lD~~~~-G~n~~La~~Lgl~~~~~l~~~~~~~g~ 136 (267)
T 2fyw_A 58 KGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFCQMLGIEETTYLQETGPERGI 136 (267)
T ss_dssp TTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEEEECSHHHHHSTT-SHHHHHHHHHTCEEEEEEEEEETTEEE
T ss_pred CCCCEEEECCccccCCccccccCchHHHHHHHHHHCCCeEEEeeccccccCC-CHHHHHHHHcCCCcccccccCCCCCCe
Confidence 48999999999999998776 4678999999999999999999999999998 99999999999999998764 468
Q ss_pred eeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-----cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 76 GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-----GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 76 g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-----~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
|++|+ + +|+|++||++++|+.|+++.+|+ ++.+++|+|||||+|||++++++|.++|||+|||||+
T Consensus 137 G~ig~--------l-~~~t~~el~~~vk~~l~~~~vr~~~~~~g~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~~ITGd~ 207 (267)
T 2fyw_A 137 GRIGN--------I-QPQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDI 207 (267)
T ss_dssp EEEEE--------E-EEEEHHHHHHHHHHHTTCSCCEEECSCTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSEEEESCC
T ss_pred EEEEE--------e-ccCCHHHHHHHHHHHcCCCeEEEEeccCCCCCCceeEEEEEcCCCHHHHHHHHHcCCCEEEEccC
Confidence 88888 8 79999999999999999887887 4556789999999999999999999999999999999
Q ss_pred CchhhhccC
Q psy2388 151 SESTKKNLK 159 (159)
Q Consensus 151 k~~~~~~a~ 159 (159)
+||++++|+
T Consensus 208 ~~h~~~~A~ 216 (267)
T 2fyw_A 208 YYHTAQDML 216 (267)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998873
No 2
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=100.00 E-value=5.4e-47 Score=304.86 Aligned_cols=148 Identities=41% Similarity=0.753 Sum_probs=134.4
Q ss_pred CCccEEEEcCCCCc-cCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEE
Q psy2388 1 MNADAILVHHGYFW-KGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIG 79 (159)
Q Consensus 1 ~~adlIItHHp~~f-~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig 79 (159)
++|||||||||+|| ++.+ .+++.+++++.+|++|||+|||+|||||+++++|+|++||+.|||++..++. ++|++|
T Consensus 55 ~~adlIitHHP~~f~~~~~-~i~~~~~~~i~~li~~~I~ly~~HtnlD~~~~~G~n~~La~~Lgl~~~~~~~--g~G~ig 131 (247)
T 1nmo_A 55 LGADAVIVHHGYFWKGESP-VIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIE--PLVPWG 131 (247)
T ss_dssp TTCSEEEEEECSCCTTSCC-CCCTHHHHHHHHHHHTTCEEEECCHHHHHCTTTSHHHHHHHHHTEEEEEEEE--TTEEEE
T ss_pred CCCCEEEECCchhccCCCc-cccchHHHHHHHHHHCCCEEEEeeechhhCCCCCHHHHHHHHcCCCCccccC--CeEEEE
Confidence 48999999999999 5543 4667789999999999999999999999999889999999999999988764 689999
Q ss_pred EEccccccccCCccCHHHHHHHHHhHhCCCcEEEcCC-CCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388 80 KIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDL-NKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNL 158 (159)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~~-~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a 158 (159)
+ +++|+|+++|++++|+.|+.+.+++++. +++|+|||||+|||++++++|.++|||+|||||++||++++|
T Consensus 132 ~--------l~~~~t~~~l~~~vk~~l~~~~~~~g~~~~~~i~~VAv~~GsG~~~~~~a~~~gaD~~iTGd~~~h~~~~a 203 (247)
T 1nmo_A 132 E--------LTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSA 203 (247)
T ss_dssp E--------EEEEECHHHHHHHHHHHHTSCCEEECTTSCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHHHHH
T ss_pred E--------eCCCCcHHHHHHHHHHHcCCCeEEECCCCcCccCEEEEECCCcHHHHHHHHHcCCCEEEEcCccHHHHHHH
Confidence 9 9889999999999999999876666765 578999999999999999999999999999999999999887
Q ss_pred C
Q psy2388 159 K 159 (159)
Q Consensus 159 ~ 159 (159)
+
T Consensus 204 ~ 204 (247)
T 1nmo_A 204 R 204 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=100.00 E-value=1.2e-46 Score=317.81 Aligned_cols=148 Identities=25% Similarity=0.417 Sum_probs=136.0
Q ss_pred CCccEEEEcCCCCccCCCCC-ccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388 1 MNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK------- 72 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~-~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~------- 72 (159)
++|||||||||+||++.++. .+++ ++++.+|++|||+|||+|||||++++ |+|+|||+.|||++.+++.+
T Consensus 60 ~~adlIItHHPlif~~~k~i~~~~~-~r~i~~li~~~Ialya~HTnlD~~~~-GvNd~LA~~Lgl~~~~~l~~~~~~~~k 137 (370)
T 2nyd_A 60 KGYNTIISHHPLIFKGVTSLKANGY-GLIIRKLIQHDINLIAMHTNLDVNPY-GVNMMLAKVMGLKNISIINNQQDVYYK 137 (370)
T ss_dssp HTCCEEEESSCSSCSCCSCCCSSTH-HHHHHHHHHTTCEEEECCHHHHTSTT-SHHHHHHHHTTCEEEEECSEEEEEEEE
T ss_pred CCCCEEEECCCcccCCccccCcCCH-HHHHHHHHHCCCeEEEeechhhccCC-cHHHHHHHHcCCCcccccCccccccce
Confidence 37999999999999998776 4668 99999999999999999999999998 99999999999998876642
Q ss_pred --------------------------------------------------------------------------------
Q psy2388 73 -------------------------------------------------------------------------------- 72 (159)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (159)
T Consensus 138 l~v~vP~~~~~~v~~al~~aGag~ig~Y~~csf~~~G~G~F~p~~~a~P~ig~~g~~~~v~e~rie~i~~~~~~~~v~~a 217 (370)
T 2nyd_A 138 VQTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQL 217 (370)
T ss_dssp EC---------------------------------------------------------------CEEECSTHHHHHHHH
T ss_pred eEEecchhhHHHHHHHHHhcccccccccccceecccccceeccccccCCccccccccccccceEEEEEechhhHHHHHHH
Confidence
Q ss_pred ----------------------CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecC
Q psy2388 73 ----------------------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGA 129 (159)
Q Consensus 73 ----------------------~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gs 129 (159)
.|+|++|+ |++|+|+++|++++|+.|+++.+|+ ++.+++|+|||||+||
T Consensus 218 l~~~hpyee~ayd~~~l~~~~~~GlGriG~--------L~~p~tl~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~Gs 289 (370)
T 2nyd_A 218 IKQYHPYETPVFDFIEIKQTSLYGLGVMAE--------VDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGS 289 (370)
T ss_dssp HCC-----CCCCCEEEEEEEEEEESCEEEE--------EEEEEEHHHHHHHHHHHTTCSCCEEESCTTCEEEEEEECCSC
T ss_pred HHhhCCccccccccccccccCCCCeEEEEE--------cCCCCCHHHHHHHHHHHcCCCceEEecCCCCcccEEEEEcCC
Confidence 25778888 9999999999999999999998888 7777889999999999
Q ss_pred chHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388 130 AQNLLTDAINEGVTAYISGEISESTKKNL 158 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~ITGe~k~~~~~~a 158 (159)
|++++++|.+.|||+|||||++||++++|
T Consensus 290 G~~~i~~a~~~gaDvyITGD~~~H~~~~A 318 (370)
T 2nyd_A 290 GIGYEYQAVQQGADVFVTGDIKHHDALDA 318 (370)
T ss_dssp CTTSHHHHHHTTCSEEEESCCCHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeCCccHHHHHHH
Confidence 99999999999999999999999999887
No 4
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=100.00 E-value=1.9e-46 Score=318.83 Aligned_cols=149 Identities=22% Similarity=0.375 Sum_probs=135.8
Q ss_pred CCccEEEEcCCCCccCCCCC-ccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCcccccccc-------
Q psy2388 1 MNADAILVHHGYFWKGENSN-IVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSK------- 72 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~-~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~------- 72 (159)
++|||||||||+||+|.++. .++++++++.+|++|||+|||+|||||++++ |+|+|||+.|||++.+++.+
T Consensus 84 ~gadlIItHHPlif~~lk~i~~~~~~~r~i~~li~~~Iavya~HTnlD~~~~-GvNd~LA~~LGl~~~~~L~~~~~~~~~ 162 (397)
T 2gx8_A 84 LGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLAEALGLQNTEVLAPTYAEEMK 162 (397)
T ss_dssp HTCCEEEESSCSCCSCCSCCCTTSHHHHHHHHHHHTTCEEEECCHHHHHSTT-SHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred CCCCEEEECCccccCCccccCcCcHHHHHHHHHHHCCCeEEEeechhhcCCC-CHHHHHHHHcCCCcccccCcccccccc
Confidence 37999999999999998776 4678999999999999999999999999998 99999999999997765431
Q ss_pred --------------------------------------------------------------------------------
Q psy2388 73 -------------------------------------------------------------------------------- 72 (159)
Q Consensus 73 -------------------------------------------------------------------------------- 72 (159)
T Consensus 163 Kl~v~vp~~~~~~v~~al~~aGag~ig~y~~csf~~~G~G~F~p~~~a~P~iG~~g~~~~v~e~rie~i~p~~~~~~v~~ 242 (397)
T 2gx8_A 163 KVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIK 242 (397)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHH
T ss_pred eeeEeccchhhHHHHHHhhhccccccccccccccccccceeeccccCCCCccCCcCcccccceeEEEEEecHHHHHHHHH
Confidence
Q ss_pred ------------------------CCeeeEEEEccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEe
Q psy2388 73 ------------------------NNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCT 127 (159)
Q Consensus 73 ------------------------~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~ 127 (159)
.|+||+|+ |++|+|+++|++++|+.|+++.+|+ ++.+++|+|||||+
T Consensus 243 al~~~HPyee~ayd~~~l~~~~~~~GlGriG~--------L~~p~tl~~f~~~vk~~L~~~~vr~~g~~~~~I~rVAvc~ 314 (397)
T 2gx8_A 243 AMVTAHPYEEVAYDVYPLDNKGETLGLGKIGY--------LQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLG 314 (397)
T ss_dssp HHHHHSSSSSCCEEEEEEEEEEEEEEEEEEEE--------EEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEE
T ss_pred HHHHhCCcccccccccccccccccCCeEEEEE--------cCCCCCHHHHHHHHHHHcCCCceEEECCCCCceeEEEEEc
Confidence 25677777 9999999999999999999998888 67778899999999
Q ss_pred cCchHHHHHHHhcCCcEEEEccCCchhhhcc
Q psy2388 128 GAAQNLLTDAINEGVTAYISGEISESTKKNL 158 (159)
Q Consensus 128 Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a 158 (159)
|||++++++|.+.|||+|||||++||++++|
T Consensus 315 GSG~~~i~~A~~~gaDvyITGD~~~H~a~dA 345 (397)
T 2gx8_A 315 GDGNKYINQAKFKGADVYVTGDMYYHVAHDA 345 (397)
T ss_dssp EECGGGHHHHHHTTCSEEEEECCCHHHHHHH
T ss_pred CCcHHHHHHHHHCCCCEEEecCCcHHHHHHH
Confidence 9999999999999999999999999999887
No 5
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=9.2e-47 Score=302.78 Aligned_cols=143 Identities=30% Similarity=0.496 Sum_probs=131.7
Q ss_pred CCccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEE
Q psy2388 1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGK 80 (159)
Q Consensus 1 ~~adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~ 80 (159)
++|||||||||+|| +.++..++++++++.+|++|||+|||+|||||+++++|+|++||+.|||++.+++. +|++|+
T Consensus 56 ~~adlIitHHp~~f-~~~~~~~~~~~~~i~~li~~~I~ly~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~l~---~G~ig~ 131 (242)
T 2yyb_A 56 EEVDFLIVHHGLFW-GKPFPIVGHHKRRLETLFQGGINLYAAHLPLDAHEEVGNNFVLARELGLVDLTPWD---VGVKGR 131 (242)
T ss_dssp TTCSEEEEEECSCS-SCCCCSCHHHHHHHHHHHHTTCEEEECSHHHHHCTTTCHHHHHHHTTTCCSCCCCS---TTCCCC
T ss_pred CCCCEEEECCCcCc-CcccccccHHHHHHHHHHHCCCeEEEeccHHhcCCCcCHHHHHHHHcCCCCCccce---eEEEEE
Confidence 58999999999999 87777667899999999999999999999999999889999999999999998864 888888
Q ss_pred EccccccccCCccCHHHHHHHHHhHhCCCcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhhhccC
Q psy2388 81 IINLKRYNFKKIITIKDLFHHITRKIGKKPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTKKNLK 159 (159)
Q Consensus 81 ~~~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~~~a~ 159 (159)
+++|+|+++|++++|++|+ +.+|+ ++.+++|+|||||+|||++++++| |||+|||||++||++++|+
T Consensus 132 --------l~~~~t~~~l~~~vk~~l~-~~vr~~g~~~~~i~~VAv~~GsG~~~~~~a---gaD~~iTGd~~~h~~~~A~ 199 (242)
T 2yyb_A 132 --------FPQPTPLLQVADRLGQLTG-MQPLVHQGGLDHVETVILVSGSGTGLLPKV---DADLFVTGEPKHSVFHETF 199 (242)
T ss_dssp --------CCCCSCBSTHHHHHHHTTS-SCCEEEESSCSBCCCEEEECSSCGGGGGGC---CSSEEEESCCCGGGHHHHH
T ss_pred --------eCCCcCHHHHHHHHHHHcc-cCeEEecCCCCceeEEEEEcCCCHHHHHHc---CCCEEEEecCCHHHHHHHH
Confidence 9889999999999999999 77887 777778999999999999998776 9999999999999998873
No 6
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=99.56 E-value=4.1e-16 Score=125.52 Aligned_cols=99 Identities=13% Similarity=0.217 Sum_probs=68.4
Q ss_pred CccEEEeccCCCCCCCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHHHHHHHhHh------CCC
Q psy2388 36 KINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKI------GKK 109 (159)
Q Consensus 36 ~I~vy~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l~~~lk~~l------~~~ 109 (159)
+|...++|||.|.. +...|-+.+.- ++ +. ....-|+.++++.+++.= .-+
T Consensus 129 ~~p~m~~H~paD~~----~~~~l~~~~~~---------~~---~~--------~~p~~t~~dvi~~L~~ipEy~~a~~~p 184 (278)
T 3rxy_A 129 EMPFLNIHLPLDEV----GRRIMVKTIQE---------AV---EP--------LGDEARVQDAIDALMTLPEFAGAATRI 184 (278)
T ss_dssp TCCEEECCHHHHHH----HHHHHHHHHHH---------HH---GG--------GGGGCBHHHHHHHHTTSHHHHSCSSCC
T ss_pred CCcceecCcchHHH----HHHHHHHHHhh---------hh---hc--------cCccchHHHHHHHHHhCchhhhcCCCC
Confidence 68888888888854 44555554420 00 00 111145666665554432 235
Q ss_pred cEEEcCCCCceeEEEEEec----CchHHHHHHHhcCCcEEEEccCCchhh-hcc
Q psy2388 110 PIVIGDLNKKIYEIGWCTG----AAQNLLTDAINEGVTAYISGEISESTK-KNL 158 (159)
Q Consensus 110 ~i~~~~~~~~i~rVai~~G----sg~~~i~~a~~~~~D~~ITGe~k~~~~-~~a 158 (159)
.+++++++++++||||++| +|.+.++++.++|+|+|||||++|+.+ ..|
T Consensus 185 ~I~~g~~~~~vgkIaV~~GgGtsG~~~~i~~a~~~GvDt~ITGe~~~~~~~~~A 238 (278)
T 3rxy_A 185 MVPVGAVDQPLGKIAVVHGAGTNGGYAVARAYFDHGVRTVLYIHIAPEEAERLR 238 (278)
T ss_dssp EEEESCTTSBCCSEEECCSSSSCCHHHHHHHHHHTTCCEEEESCCCHHHHHHHH
T ss_pred EEEeCCCCCcCCEEEEEcCCCCCCcHHHHHHHHHcCCCEEEEecCchHHHHHHH
Confidence 6778888999999999999 445789999999999999999999998 544
No 7
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=96.22 E-value=0.012 Score=46.98 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 93 ITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
|+..|+.+.+.+.+.. ..+.+|+.+++|+||++|-=...+.+++|.++|||++||
T Consensus 3 M~~~ei~~~le~~~p~~~a~~~D~~GL~vG~~~~~V~~I~~alD~t~~vi~eAi~~gadlIit 65 (267)
T 2fyw_A 3 MLASEVIQAYEAFCPQEFSMEGDSRGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLIIV 65 (267)
T ss_dssp CBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCSEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHhCCHhHcCCCCCCeeEeCCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 5678899998887643 256667778899999999999999999999999999997
No 8
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=95.40 E-value=0.054 Score=42.63 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 93 ITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
|+..|+.+.+.+.+.. ..+.+ +++++|+||++|-=.....+++|.++|||++||
T Consensus 1 M~~~ei~~~le~~~p~~~~~~~d~~GL~v-~~~~~V~~I~~~lD~t~~vi~eAi~~~adlIit 62 (247)
T 1nmo_A 1 MKNTELEQLINEKLNSAAISDYAPNGLQV-EGKETVQKIVTGVTASQALLDEAVRLGADAVIV 62 (247)
T ss_dssp CBHHHHHHHHHHHTTCTTSCCSSCCEEEE-CCCSBCCEEEEEEECCHHHHHHHHHTTCSEEEE
T ss_pred CcHHHHHHHHHHhCChhhhCCcCCCeeEE-CCCCccCEEEEEEcCCHHHHHHHHhCCCCEEEE
Confidence 3567888888888742 23445 567899999999999999999999999999997
No 9
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=95.19 E-value=0.037 Score=46.30 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 92 IITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
+|++.|+++.+.+.+.. ..+.+|+.+++|+||++|-=.-...+++|.++|||++||
T Consensus 4 ~m~~~eii~~le~~~P~~~ae~wDn~GL~vG~~~~~V~~Vl~alD~t~~Vv~eAi~~~adlIIt 67 (370)
T 2nyd_A 4 PMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIIS 67 (370)
T ss_dssp CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCTTSBCCCEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred CcCHHHHHHHHHHhCCHhHcCCCCcCeEEeCCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 57788999999887643 256677778899999999999999999999999999997
No 10
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=94.90 E-value=0.055 Score=45.71 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=47.8
Q ss_pred ccCHHHHHHHHHhHhCC--------CcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 92 IITIKDLFHHITRKIGK--------KPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~--------~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
.+++.|+++.+.+.+.. ..+.+|+.+++|+||++|-=.-...+++|.++|||++||
T Consensus 28 ~m~~~eii~~le~~aP~~lae~wDnvGL~vG~~~~~V~~Vl~alD~t~~Vv~eAi~~gadlIIt 91 (397)
T 2gx8_A 28 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIA 91 (397)
T ss_dssp CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred cccHHHHHHHHHHhCCHhHcCCCCCCeeEeCCCccccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 36688999999987643 256677778899999999999999999999999999997
No 11
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=93.57 E-value=0.091 Score=41.23 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhHhCC---------CcEEE-cCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 94 TIKDLFHHITRKIGK---------KPIVI-GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 94 ~~~~l~~~lk~~l~~---------~~i~~-~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
+..|+.+.+.+.+.. ..+.+ |+ ++|+||++|-=...+.+++|.++|||++||
T Consensus 2 ~~~ei~~~le~~~p~~~~~~~~d~~GL~veG~--~~V~~I~~alD~t~~vi~eAi~~~adlIit 63 (242)
T 2yyb_A 2 DRDELVRYLDAYLRIQDFPQDPSLNGLQVEGK--RTVRKVGAAVDAGEAIFRKALEEEVDFLIV 63 (242)
T ss_dssp BHHHHHHHHHHHTTGGGCTTCSSCCEEEECCC--SBCCCEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHhCCHhhhccCCCCCeEEEcCC--cccCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 466777777776543 23555 43 889999999999999999999999999997
No 12
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=91.68 E-value=0.68 Score=37.16 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHHhHhCCC------cEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 92 IITIKDLFHHITRKIGKK------PIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~------~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
-++.+++.+.+.+.-++. .+.+ .+++|+||.++-=...+.+.+|.+.|||++||
T Consensus 6 ~m~~~~I~~~~~e~aplae~~dd~Gllv--~~~eV~kIlvaLD~t~~vv~eA~~~g~dlIIt 65 (278)
T 3rxy_A 6 GLSTAELVDIALEMAEMRTLPADSAVYV--ESTDLKRVMMGIDIGPAELLLARQLGCDGVIA 65 (278)
T ss_dssp CBCHHHHHHHHHHHTTCSSCCTTCEEEE--CCSCBSEEEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred cCcHHHHHHHHHHhcCcccCCCCceeee--ccccccEEEEEECCCHHHHHHHHHcCCCEEEE
Confidence 467888888888877642 3334 68899999999999999999999999999998
No 13
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=78.31 E-value=1.7 Score=34.40 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.1
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|||++||+++ ..-+...++|++|++++-
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r 61 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGR 61 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 48999999875 456666889999999974
No 14
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=63.29 E-value=20 Score=27.31 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=37.3
Q ss_pred ccEE-EEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcC
Q psy2388 3 ADAI-LVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILN 63 (159)
Q Consensus 3 adlI-ItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lg 63 (159)
.++| ||||.=|-+|. ......+..++|.+.|+.|+...-.|. |+...+.+.+|
T Consensus 67 i~lVvVTh~~GF~~pg---~~e~~~e~~~~L~~~G~~V~t~tH~ls-----gveR~is~kfG 120 (201)
T 1vp8_A 67 LEVVVVTYHTGFVREG---ENTMPPEVEEELRKRGAKIVRQSHILS-----GLERSISRKLG 120 (201)
T ss_dssp CEEEEEECCTTSSSTT---CCSSCHHHHHHHHHTTCEEEECCCTTT-----TTHHHHHHHTC
T ss_pred CeEEEEeCcCCCCCCC---CCcCCHHHHHHHHhCCCEEEEEecccc-----chhHHHHHhcC
Confidence 4555 56665544432 233457889999999999999988876 67777777654
No 15
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=63.21 E-value=12 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.1
Q ss_pred cCCccCHHHHHHHHHhHhCCC-cEEEcC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK-PIVIGD 115 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~-~i~~~~ 115 (159)
++.|++++||.+++++.||-+ .++|-+
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~n 51 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYTN 51 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEECS
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEec
Confidence 888999999999999999987 466643
No 16
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=56.00 E-value=19 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.2
Q ss_pred CccCHHHHHHHHHhHhCCCcEEE
Q psy2388 91 KIITIKDLFHHITRKIGKKPIVI 113 (159)
Q Consensus 91 ~~~~~~~l~~~lk~~l~~~~i~~ 113 (159)
+..|++++...++..|+++.+++
T Consensus 26 ~~~tweel~~mvk~~f~L~~~~i 48 (87)
T 2bkf_A 26 ENTTWADIEAMVKVSFDLNTIQI 48 (87)
T ss_dssp GGCCHHHHHHHHHHHHTCSSEEE
T ss_pred CCCCHHHHHHHHHHHcCCCceEE
Confidence 36899999999999999987665
No 17
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=53.92 E-value=15 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.4
Q ss_pred cCCccCHHHHHHHHHhHhCCC-cEEEc
Q psy2388 89 FKKIITIKDLFHHITRKIGKK-PIVIG 114 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~-~i~~~ 114 (159)
++.|+.++|+.+++++.||.+ .+.|.
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~ 46 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYM 46 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe
Confidence 889999999999999999977 35553
No 18
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=53.72 E-value=12 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=21.2
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r 48 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLAR 48 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 35677777653 566677889999998864
No 19
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=53.06 E-value=12 Score=28.85 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=21.0
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 56 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCAR 56 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 46777777654 566677788999998874
No 20
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=52.84 E-value=10 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=21.8
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 60 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGR 60 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 46788877753 566777889999998864
No 21
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=52.26 E-value=12 Score=28.83 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=21.3
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.|++++||+++ .+.+...+.|+++++++
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 60 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGFDIAITG 60 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 46778777654 56667788999999987
No 22
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=51.26 E-value=13 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=21.2
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 60 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGVTVGALGR 60 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777654 566667788999998864
No 23
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=51.01 E-value=14 Score=28.47 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=21.0
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777653 566777889999999875
No 24
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=50.65 E-value=11 Score=29.00 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r 65 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGYSVVITGR 65 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 46788887754 566677788999999864
No 25
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=50.32 E-value=13 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=21.5
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r 63 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGR 63 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 36777777654 566677889999999883
No 26
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=50.04 E-value=13 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=21.5
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r 59 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASR 59 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46778777754 556667788999998864
No 27
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=49.85 E-value=18 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.4
Q ss_pred cCCccCHHHHHHHHHhHhCCC-cEEEc
Q psy2388 89 FKKIITIKDLFHHITRKIGKK-PIVIG 114 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~-~i~~~ 114 (159)
++.|+.++||.++++..||.+ .+.|-
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~ 73 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYM 73 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEe
Confidence 899999999999999999987 35553
No 28
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=49.48 E-value=17 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=21.3
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+.+++++-
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r 62 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADL 62 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777653 567777889999998863
No 29
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=48.10 E-value=12 Score=28.62 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=21.6
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 60 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTAT 60 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 36788887754 566667888999998864
No 30
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=47.78 E-value=16 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
|++++||+++ .+.+...+.|+++++++
T Consensus 16 k~~lVTGas~gIG~a~a~~la~~G~~V~~~~ 46 (280)
T 3pgx_A 16 RVAFITGAARGQGRSHAVRLAAEGADIIACD 46 (280)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 5677777653 56667788999999986
No 31
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=47.73 E-value=16 Score=28.11 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=20.7
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 64 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYAEAGAQVAVAAR 64 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777653 566777888999999875
No 32
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=47.00 E-value=16 Score=28.30 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=21.2
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~ 60 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDV 60 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence 36777777754 566667889999998753
No 33
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=46.95 E-value=13 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=21.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r 58 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLAVAGARILINGT 58 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 6778777754 566677889999999864
No 34
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=46.74 E-value=15 Score=28.21 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=21.0
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r 59 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADV 59 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777654 566677888999998863
No 35
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=46.51 E-value=14 Score=28.21 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 29 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r 60 (266)
T 3uxy_A 29 KVALVTGAAGGIGGAVVTALRAAGARVAVADR 60 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEECSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777654 566677889999998864
No 36
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=46.34 E-value=17 Score=27.27 Aligned_cols=30 Identities=3% Similarity=-0.181 Sum_probs=21.1
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~ 150 (159)
.|++++||+++ .+.+...+.|+++++++--
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~ 55 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFR 55 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45667666653 5666778889999988743
No 37
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=46.25 E-value=15 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=20.7
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+.+++++-
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 65 (275)
T 4imr_A 34 RTALVTGSSRGIGAAIAEGLAGAGAHVILHGV 65 (275)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 5777777653 566667788999998864
No 38
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=46.16 E-value=16 Score=27.76 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=20.5
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 29 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r 60 (260)
T 3un1_A 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSR 60 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777653 566777889999998864
No 39
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=46.11 E-value=15 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r 52 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGARLVLSGR 52 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777653 566677888999998864
No 40
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=45.94 E-value=17 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=20.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 17 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 48 (291)
T 3rd5_A 17 RTVVITGANSGLGAVTARELARRGATVIMAVR 48 (291)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 4566666643 567777889999998863
No 41
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=45.87 E-value=17 Score=27.60 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r 53 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR 53 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 35677777653 566677788999998753
No 42
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=45.85 E-value=24 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.9
Q ss_pred cCCccCHHHHHHHHHhHhCCC-cEEE
Q psy2388 89 FKKIITIKDLFHHITRKIGKK-PIVI 113 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~-~i~~ 113 (159)
++.|+.++||.++++..||.+ .+.|
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y 61 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHY 61 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEE
Confidence 899999999999999999977 3555
No 43
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=45.57 E-value=15 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=21.5
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r 73 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAAR 73 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 36777777754 566677889999999864
No 44
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=45.53 E-value=14 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=21.5
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEccCC
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~k 151 (159)
|++++||+++ .+.+...+.|+++++++--.
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~ 61 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTE 61 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5677777653 56666778899999987543
No 45
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=45.41 E-value=17 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
+++++||+++ .+.+...+.|+++++++-
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r 61 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTAR 61 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 5666666543 667777888999998864
No 46
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=45.17 E-value=15 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=21.4
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
+|++++||+++ .+.+...+.|+++++++
T Consensus 25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~ 56 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSH 56 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 46778877654 56777788999999887
No 47
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=44.88 E-value=16 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=21.1
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r 61 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADI 61 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777653 566667888999998863
No 48
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=44.63 E-value=13 Score=25.94 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=10.1
Q ss_pred EEecCchHHHHHHHhcCCcEEEE
Q psy2388 125 WCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 125 i~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
||+|-|...++...+ |+++|.+
T Consensus 84 I~g~iG~~a~~~L~~-GI~v~~~ 105 (136)
T 2re2_A 84 VLSEIGSPGFNFIKN-KMDVYIV 105 (136)
T ss_dssp EESCCBHHHHHHHTT-TSEEEEC
T ss_pred EECCCCHhHHHHHHC-CCEEEEc
Confidence 344444444444444 5555443
No 49
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=44.56 E-value=37 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=24.8
Q ss_pred EEecCc---hHHHHHHHhcCCcEEEEccCCchhhh
Q psy2388 125 WCTGAA---QNLLTDAINEGVTAYISGEISESTKK 156 (159)
Q Consensus 125 i~~Gsg---~~~i~~a~~~~~D~~ITGe~k~~~~~ 156 (159)
+.+|++ .+.+++|.++|||+..||+..-|.-+
T Consensus 153 iIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~~ 187 (192)
T 3kts_A 153 VIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEGH 187 (192)
T ss_dssp EEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTTC
T ss_pred EEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCcc
Confidence 445555 36788999999999999998877643
No 50
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=44.38 E-value=11 Score=25.29 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=15.7
Q ss_pred cCchHHHHHHHhcCCcEEEEccCCch
Q psy2388 128 GAAQNLLTDAINEGVTAYISGEISES 153 (159)
Q Consensus 128 Gsg~~~i~~a~~~~~D~~ITGe~k~~ 153 (159)
|.|....+.....|||++|+|.+...
T Consensus 49 g~g~~~~~~l~~~gv~~vi~~~iG~~ 74 (116)
T 1rdu_A 49 GTGPKVVQSLVSKGVEYLIASNVGRN 74 (116)
T ss_dssp CSSCSHHHHHHTTTCCEEECSSCCSS
T ss_pred CccHHHHHHHHHcCCCEEEECCCCHh
Confidence 44444555555677888887776543
No 51
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=44.33 E-value=19 Score=27.85 Aligned_cols=30 Identities=17% Similarity=-0.027 Sum_probs=21.5
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~ 150 (159)
.|++++||+++ .+.+...++|+++++++--
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~ 80 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLD 80 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36777777653 5666778899999988643
No 52
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=43.78 E-value=17 Score=27.72 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~ 60 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYA 60 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777654 566667888999988754
No 53
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=43.52 E-value=24 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=24.4
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe~ 150 (159)
.|.+-+|=+.+-++++.+.|||+++.|-.
T Consensus 175 ~I~VdGGI~~~ti~~~~~aGAd~~V~Gsa 203 (227)
T 1tqx_A 175 NIQVDGGLNIETTEISASHGANIIVAGTS 203 (227)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCEEEESHH
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 47777888888899999999999999853
No 54
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=43.50 E-value=17 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~ 150 (159)
|++++||+++ .+.+...+.|+++++++.-
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~ 62 (271)
T 4iin_A 30 KNVLITGASKGIGAEIAKTLASMGLKVWINYRS 62 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5666666643 5677778899999998763
No 55
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=43.32 E-value=20 Score=27.40 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...++|+.+++++.
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~ 63 (271)
T 3v2g_A 32 KTAFVTGGSRGIGAAIAKRLALEGAAVALTYV 63 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777654 566677889999998853
No 56
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=43.31 E-value=18 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=21.1
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.|++++||+++ .+.+...+.|+++++++
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~ 58 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVND 58 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 36778777654 56667788999999985
No 57
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=43.28 E-value=20 Score=27.54 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r 53 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGR 53 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 5667776643 667777888999998763
No 58
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=42.78 E-value=19 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=21.0
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r 59 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGT 59 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777654 556666788999998864
No 59
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=42.67 E-value=16 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=21.0
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~ 150 (159)
|++++||+++ .+.+...+.|+++++++--
T Consensus 24 k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~ 56 (288)
T 2x9g_A 24 PAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHN 56 (288)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5778777654 5566667789999988643
No 60
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=42.63 E-value=54 Score=24.99 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=37.6
Q ss_pred cEE-EEcCCCCccCCCCCccChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcC
Q psy2388 4 DAI-LVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILN 63 (159)
Q Consensus 4 dlI-ItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lg 63 (159)
++| ||||.=|-+|. ......+..++|.+.|+.||.-.-.|- |+...+.+++|
T Consensus 75 ~lVvVTh~~GF~~pg---~~e~~~e~~~~L~~~G~~V~t~tH~ls-----G~eR~is~kfG 127 (206)
T 1t57_A 75 NIVSVTHHAGFREKG---QLELEDEARDALLERGVNVYAGSHALS-----GVGRGISNRFG 127 (206)
T ss_dssp EEEEECCCTTSSSTT---CCSSCHHHHHHHHHHTCEEECCSCTTT-----THHHHHHHHHC
T ss_pred CEEEEeCcCCCCCCC---CCcCCHHHHHHHHhCCCEEEEeecccc-----chhHHHHHhcC
Confidence 455 46665544432 233457889999999999999888873 78888888775
No 61
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=42.40 E-value=22 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=21.3
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~ 81 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYL 81 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36777777653 566677889999999764
No 62
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=42.35 E-value=23 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r 61 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICAR 61 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 5667776643 566677788999998863
No 63
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=42.15 E-value=21 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
|++++||+++ .+.+...+.|+++++++
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~ 53 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCA 53 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5666666643 56666778899998875
No 64
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=41.89 E-value=20 Score=27.18 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=21.1
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|++++++..
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~ 50 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA 50 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 36777777754 556667889999998653
No 65
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=41.77 E-value=22 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+.+++++-
T Consensus 32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r 63 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFARRGARLVLSDV 63 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 5666666543 667777888999998863
No 66
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=41.55 E-value=20 Score=27.34 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.5
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.|++++||+++ .+.+...+.|++++++.
T Consensus 27 ~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~ 58 (267)
T 3u5t_A 27 NKVAIVTGASRGIGAAIAARLASDGFTVVINY 58 (267)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 36777777654 55666678899999874
No 67
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=41.40 E-value=23 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
+++++||+++ .+.+...+.|+++++++-
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r 53 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSR 53 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 5667776643 566667788999998763
No 68
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=40.04 E-value=47 Score=24.98 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=23.3
Q ss_pred EEEEcCCCCccCCCCCccC-hHHHHHHHHHhc-Cc-cEEEeccCCCC
Q psy2388 5 AILVHHGYFWKGENSNIVG-IKKKRLEQLIIN-KI-NLYAYHLPLDM 48 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~~~-~~~~~~~~l~~~-~I-~vy~~Ht~lD~ 48 (159)
+|++|||+.-......... ...+....+.++ ++ .+++=|+....
T Consensus 224 iv~~H~p~~~~~~~~~~~~~~~~~~~~ll~~~~~v~~~~~GH~H~~~ 270 (322)
T 2nxf_A 224 LIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGG 270 (322)
T ss_dssp EEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTTEEEEEECSCTTCE
T ss_pred EEEEccCCCCCCCCccccccCHHHHHHHHhcCCCeEEEEcCCcCCCC
Confidence 6899999865432111111 123444444455 55 36677877654
No 69
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=39.59 E-value=21 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
+++++||+++ .+.+...+.|+++++++
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~~Vv~~~ 77 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHY 77 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 5777777654 56666678899999887
No 70
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=39.53 E-value=25 Score=26.53 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=20.0
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r 53 (253)
T 2nm0_A 22 RSVLVTGGNRGIGLAIARAFADAGDKVAITYR 53 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5666666643 567777889999988753
No 71
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=39.51 E-value=23 Score=27.79 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.|++++||+++ .+.+...+.|+++++++
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~ 77 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAID 77 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 36788877754 56666788999999874
No 72
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=39.44 E-value=21 Score=27.66 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=20.3
Q ss_pred eEEEEEecCch------HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ------NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~------~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+++ .+.+...+.|+++++++-
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r 65 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQ 65 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 35777777532 466667888999998863
No 73
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=39.41 E-value=22 Score=23.98 Aligned_cols=21 Identities=24% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCcEEEEccCCc
Q psy2388 132 NLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe~k~ 152 (159)
...+...+.|||++|+|.+..
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~ 76 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGP 76 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSH
T ss_pred HHHHHHHHCCCCEEEECCcCH
Confidence 344444455666666665543
No 74
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=39.30 E-value=90 Score=21.31 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=34.6
Q ss_pred ccCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc-hHHHHHHHhcCCcEEEEccCC
Q psy2388 88 NFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA-QNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 88 ~l~~~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg-~~~i~~a~~~~~D~~ITGe~k 151 (159)
++| .++=-|+++++++.-. ...+. |-++|+.+ .+...++.+.|+|-||+=-++
T Consensus 66 ~MP-~mdG~el~~~ir~~~~---------~~~ip-vI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~ 119 (134)
T 3to5_A 66 NMP-GMQGIDLLKNIRADEE---------LKHLP-VLMITAEAKREQIIEAAQAGVNGYIVKPFT 119 (134)
T ss_dssp CCS-SSCHHHHHHHHHHSTT---------TTTCC-EEEEESSCCHHHHHHHHHTTCCEEEESSCC
T ss_pred CCC-CCCHHHHHHHHHhCCC---------CCCCe-EEEEECCCCHHHHHHHHHCCCCEEEECCCC
Confidence 355 4788899999985321 12233 44555655 466778889999999985443
No 75
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=39.14 E-value=21 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=22.9
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
.|.+.+|=..+-++++.+.|||++|.|-
T Consensus 171 ~I~VdGGI~~~t~~~~~~aGAd~~VvGs 198 (228)
T 3ovp_A 171 DIEVDGGVGPDTVHKCAEAGANMIVSGS 198 (228)
T ss_dssp EEEEESSCSTTTHHHHHHHTCCEEEESH
T ss_pred CEEEeCCcCHHHHHHHHHcCCCEEEEeH
Confidence 4677777777778889999999999993
No 76
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=39.06 E-value=23 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.3
Q ss_pred EEEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
.|.|-+|=..+-++++.+.|||+++.|-
T Consensus 197 ~I~VDGGI~~~ti~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 197 LLEIDGGVNPYNIAEIAVCGVNAFVAGS 224 (246)
T ss_dssp EEEEESSCCTTTHHHHHTTTCCEEEESH
T ss_pred eEEEECCcCHHHHHHHHHcCCCEEEEeh
Confidence 3566666667778899999999999983
No 77
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=38.93 E-value=24 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=20.4
Q ss_pred eEEEEEecC-ch----HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGA-AQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gs-g~----~~i~~a~~~~~D~~ITGe 149 (159)
.|++++||+ |. .+.+...+.|+++++++-
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r 55 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDY 55 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 356666665 42 567777889999998863
No 78
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=38.86 E-value=23 Score=27.05 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=20.9
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~ 150 (159)
|++++||+++ .+.+...+.|+++++++--
T Consensus 30 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~ 62 (283)
T 1g0o_A 30 KVALVTGAGRGIGREMAMELGRRGCKVIVNYAN 62 (283)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5677777653 5666777889999987643
No 79
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=38.45 E-value=24 Score=28.26 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=21.9
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITGe~ 150 (159)
.|++++||+++ .+.+...+.|+++++++--
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~ 78 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKT 78 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECC
Confidence 46777777653 5667778899999998744
No 80
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=38.27 E-value=23 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r 58 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGR 58 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777653 566677788999998853
No 81
>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* 3o03_A*
Probab=38.16 E-value=27 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 35 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r 66 (291)
T 3cxt_A 35 KIALVTGASYGIGFAIASAYAKAGATIVFNDI 66 (291)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5667766643 566667788999988753
No 82
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=38.11 E-value=29 Score=28.08 Aligned_cols=43 Identities=12% Similarity=-0.014 Sum_probs=25.1
Q ss_pred EEEEcCCCCccCCCCCccChHHHHHHHHHhcCccE-EEeccCCC
Q psy2388 5 AILVHHGYFWKGENSNIVGIKKKRLEQLIINKINL-YAYHLPLD 47 (159)
Q Consensus 5 lIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~v-y~~Ht~lD 47 (159)
+++.|||++-.+..........+....+.++++.+ ++=|+..-
T Consensus 194 IV~~HhP~~~~~~~~~~~~l~~~l~~ll~~~~VdlvlsGH~H~~ 237 (342)
T 3tgh_A 194 IVVGDQPIYSSGYSRGSSYLAYYLLPLLKDAEVDLYISGHDNNM 237 (342)
T ss_dssp EEECSSCSSCSSTTCCCHHHHHHTHHHHHHTTCCEEEECSSSSE
T ss_pred EEEECCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCcce
Confidence 57889998654321001112345666777888865 66677644
No 83
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=37.94 E-value=67 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=33.0
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
.++.+|+++++++.... .++ -|+..+|+|-+. +.+.+.|+|++|+
T Consensus 10 ~~~r~~il~~l~~~i~~--------~~~--iig~gaGtGlsA-k~~e~gGaDlii~ 54 (286)
T 2p10_A 10 RPTRSELVDRFQKKIRA--------GEP--IIGGGAGTGLSA-KSEEAGDIDLIVI 54 (286)
T ss_dssp CCCHHHHHHHHHHHHHT--------TCC--EEEEEESSHHHH-HHHHHTTCSEEEE
T ss_pred ccCHHHHHHHHHHHHhc--------CCc--eEEEecccchhh-HHHHhCCCCEEEE
Confidence 47899999999987641 222 477778888663 4557789999986
No 84
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Probab=37.02 E-value=23 Score=29.89 Aligned_cols=28 Identities=14% Similarity=-0.143 Sum_probs=20.1
Q ss_pred eEEEEEecCch----HHHHHHHh-cCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAIN-EGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~-~~~D~~ITG 148 (159)
.|++++||+++ ..-+..++ .|+++++++
T Consensus 61 gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~ 93 (422)
T 3s8m_A 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVF 93 (422)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCCCEEEEEe
Confidence 67889888764 33344456 899999875
No 85
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=36.80 E-value=29 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=20.8
Q ss_pred eEEEEEecCc---h---HHHHHHHhcCCcEEEEccC
Q psy2388 121 YEIGWCTGAA---Q---NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 121 ~rVai~~Gsg---~---~~i~~a~~~~~D~~ITGe~ 150 (159)
.|++++||++ + .+.+...+.|++|++++--
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~ 65 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS 65 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567777653 2 5666778899999988643
No 86
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=36.54 E-value=26 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=19.7
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|++++||+++ .+.+...+.|+++++++-
T Consensus 16 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r 47 (247)
T 1uzm_A 16 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHR 47 (247)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566666643 566677788999998753
No 87
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.30 E-value=21 Score=24.21 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=19.7
Q ss_pred CCccCHHHHHHHHHhHhCCCcEEE
Q psy2388 90 KKIITIKDLFHHITRKIGKKPIVI 113 (159)
Q Consensus 90 ~~~~~~~~l~~~lk~~l~~~~i~~ 113 (159)
++..+++|+...++..|+++.+++
T Consensus 33 ~~~~tweel~~mvk~~f~L~~~~I 56 (101)
T 1wj6_A 33 PENTTWADIEAMVKVSFDLNTIQI 56 (101)
T ss_dssp TTTSCHHHHHHHHHHHHCCSSBCC
T ss_pred CCCCCHHHHHHHHHHHcCCCceEE
Confidence 346899999999999999985443
No 88
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=35.95 E-value=38 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=18.9
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
|++++||+++ .+.+...+.|+++++++
T Consensus 20 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~ 50 (249)
T 1o5i_A 20 KGVLVLAASRGIGRAVADVLSQEGAEVTICA 50 (249)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 4556665543 56677788899999875
No 89
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=35.87 E-value=60 Score=25.44 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=32.5
Q ss_pred cChHHHHHHHHHhcCccEEEeccCCCCCCCCCHHHHHHHHcC
Q psy2388 22 VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILN 63 (159)
Q Consensus 22 ~~~~~~~~~~l~~~~I~vy~~Ht~lD~~~~~G~n~~La~~Lg 63 (159)
.....+.++..+++|..+..+|...|+-++ +.+..+++|
T Consensus 72 ~~~~~~~l~~yV~~Ggglv~~H~a~~~~~~---w~~y~~liG 110 (281)
T 4e5v_A 72 PEETNRRFLEYVQNGGGVVIYHAADNAFSK---WPEFNRICA 110 (281)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEGGGGGSCTT---CHHHHHHHS
T ss_pred CHHHHHHHHHHHHcCCCEEEEecccccCCC---CHHHHHhee
Confidence 445678899999999999999998887654 577889999
No 90
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=35.59 E-value=31 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=19.9
Q ss_pred EEEEEecCc------hHHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAA------QNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg------~~~i~~a~~~~~D~~ITGe 149 (159)
|++++||++ ..+.+...+.|+++++++-
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r 55 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFHREGAQLAFTYA 55 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 566777653 2566677788999998863
No 91
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=34.91 E-value=38 Score=25.46 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=23.9
Q ss_pred cEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccE-EEeccCC
Q psy2388 4 DAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINL-YAYHLPL 46 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~v-y~~Ht~l 46 (159)
.++++|||++-............+....+.++++.+ ++=|+..
T Consensus 181 ~iv~~H~p~~~~~~~~~~~~~~~~l~~~l~~~~v~~~l~GH~H~ 224 (313)
T 1ute_A 181 VLVAGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHN 224 (313)
T ss_dssp EEEECSSCSSCCSSSCCCHHHHHHTHHHHHHTTCSEEEECSSSS
T ss_pred EEEEECCCCccCCCCCCcHHHHHHHHHHHHHcCCcEEEECChhh
Confidence 578999998654321111111234444556667754 7778874
No 92
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=34.88 E-value=46 Score=27.00 Aligned_cols=30 Identities=3% Similarity=0.019 Sum_probs=20.1
Q ss_pred ecCchHHHHHHHh--cCCcEEEEccCCchhhh
Q psy2388 127 TGAAQNLLTDAIN--EGVTAYISGEISESTKK 156 (159)
Q Consensus 127 ~Gsg~~~i~~a~~--~~~D~~ITGe~k~~~~~ 156 (159)
.|+.+.++++..+ ..+|+|++++.++-+.+
T Consensus 77 ~ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l 108 (354)
T 3k6v_A 77 AAGSAQSVRKITELGKKADVLASADYALIPSL 108 (354)
T ss_dssp EECHHHHHHHHHTSCCCCSEEEESSTTHHHHH
T ss_pred eCCHHHHHHHHHhcCCCccEEEECCHHHHHHH
Confidence 3444466666644 45899999998765543
No 93
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Probab=34.29 E-value=30 Score=30.14 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.4
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.|++++||+++ .+.+...+.|+.|++++
T Consensus 322 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~ 353 (604)
T 2et6_A 322 DKVVLITGAGAGLGKEYAKWFAKYGAKVVVND 353 (604)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCeEEEECcchHHHHHHHHHHHHCCCEEEEEe
Confidence 47999999875 55666678999999986
No 94
>3nek_A Nitrogen repressor-like protein MJ0159; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Methanocaldococcus jannaschii}
Probab=34.24 E-value=94 Score=24.13 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHhHhCCCcEE-EcCCCCc-----e--eEEEEEecCchHHHHHHHhcCCcEE
Q psy2388 92 IITIKDLFHHITRKIGKKPIV-IGDLNKK-----I--YEIGWCTGAAQNLLTDAINEGVTAY 145 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~-~~~~~~~-----i--~rVai~~Gsg~~~i~~a~~~~~D~~ 145 (159)
|++..|-++.+-++++...+. +|.++++ | .++++++-+|...+..+.+.|.++=
T Consensus 158 P~~a~e~~~~il~~l~~~Gil~iG~p~~~vlgvpv~~~~~Giv~~GG~Npiaa~~E~Gi~i~ 219 (238)
T 3nek_A 158 HRVAREKLEEVLKKLNWNGIKAIGEPNNELYGIGVNKDMCGVVTMGGINPLVLLKENEIPIE 219 (238)
T ss_dssp ETTTHHHHHHHHHHHCCTTEEEECCTTCCBTTBCCCTTEEEEEEECTTHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHHHHHhcccCCEEEECCCCCcccCCcCCCCeEEEEEEeCccHhHhhhhcCCeeE
Confidence 466777777777888887654 4654332 3 5799999899888888888998864
No 95
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=34.10 E-value=30 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=20.4
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.+++++||+++ .+.+...+.|+.++++.
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~ 57 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNY 57 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 35777777653 66777788999998873
No 96
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Probab=33.80 E-value=27 Score=29.25 Aligned_cols=28 Identities=14% Similarity=-0.128 Sum_probs=19.6
Q ss_pred eEEEEEecCch----HHHHHHHh-cCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAIN-EGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~-~~~D~~ITG 148 (159)
.|++++||+++ ..-+..++ .|+++++++
T Consensus 47 gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~ 79 (405)
T 3zu3_A 47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVF 79 (405)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEe
Confidence 47888888764 33444466 799999875
No 97
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=33.23 E-value=88 Score=21.32 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=31.6
Q ss_pred ccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEE-ccCC
Q psy2388 92 IITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYIS-GEIS 151 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~IT-Ge~k 151 (159)
.+++.++++ .|+...+.-++.++.|++|.+++=.-.++++......-.+.|| |+-.
T Consensus 7 ~~tv~~i~~----~l~~~vl~g~~~~~~i~~i~~~a~~~~~~~~~~~~~~~~l~I~~G~r~ 63 (139)
T 2ioj_A 7 GLSVEEIRE----AVSGEYLIEPREEKMVEQVVIGAMSPQSALRYLREARNAALVTGGDRS 63 (139)
T ss_dssp CEEHHHHHH----HTTCEEEECCSSCCEECEEEECSSCHHHHHHHHHTCSSEEEEEETTCH
T ss_pred CCCHHHHHH----HcCCEEEEcCCCCeEEeeEEEEeCCHHHHHHHHhcCCCEEEEEcCCHH
Confidence 367778775 4565544322236678866655444446665554321248899 7654
No 98
>2jz7_A Selenium binding protein; NMR {Methanococcus vannielii}
Probab=32.70 E-value=86 Score=20.27 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=29.5
Q ss_pred CCceeEEEEEecCc-------hHHHHHHHhcCCcEEEEccCCch
Q psy2388 117 NKKIYEIGWCTGAA-------QNLLTDAINEGVTAYISGEISES 153 (159)
Q Consensus 117 ~~~i~rVai~~Gsg-------~~~i~~a~~~~~D~~ITGe~k~~ 153 (159)
..+|+..+++.|.. ..+.++|.+.|||+.|-=++.+.
T Consensus 17 G~~I~~lGiV~G~~vaR~~A~~rm~e~A~~lGAnAVVgvr~d~~ 60 (81)
T 2jz7_A 17 GLQLYSLGIASTISDNVDEIVENLRKQVKAKGGMGLIAFRITCA 60 (81)
T ss_dssp TSCCEEEEEECCCCSSHHHHHHHHHHHHHHTTCCEEECCCCCCC
T ss_pred CcEEEEEEEEEEEEehHHHHHHHHHHHHHHcCCCEEEEEEEEcc
Confidence 55678899999986 27888999999999987665543
No 99
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=32.58 E-value=44 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=20.3
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
++|.|.+|+|. .+.+...+.|.++.++.-
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R 53 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVR 53 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence 35666666663 677777888999887753
No 100
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=32.56 E-value=45 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=18.9
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
|+++++|+++ .+.+...+.|+++++++-
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r 64 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCAR 64 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 4555555542 667777788999988753
No 101
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=32.32 E-value=31 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=21.1
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccCCchh
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
|-+..|+.+.+++++.+-.+|+|++.+.+..+
T Consensus 36 V~~~~~gSg~ll~qi~~G~aDVfisa~~~~~~ 67 (242)
T 3kn3_A 36 LKWVAVGTGNALKLGENCDVDVVFVHAPKVEL 67 (242)
T ss_dssp EEEEEECHHHHHHHHHTTCCSEEEECCHHHHH
T ss_pred EEEEEcCcHHHHHHHhcCCCCEEEecChHhHH
Confidence 44444444466667665569999999876554
No 102
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=31.76 E-value=32 Score=26.37 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=21.3
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccCCchhh
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEISESTK 155 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~ 155 (159)
|-+..|+.+.+++++.+-.+|+|++++.+....
T Consensus 36 V~~~~~gSg~ll~qi~~G~aDv~isa~~~~~~~ 68 (237)
T 3muq_A 36 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGT 68 (237)
T ss_dssp EEEEEECHHHHHHHHHTTSSSEEEECCHHHHHH
T ss_pred EEEEEcChHHHHHHHhcCCCCEEEecCchhHHH
Confidence 333334444556776666699999999776554
No 103
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=31.61 E-value=28 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=19.2
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
++++++|+++ .+.+...+.|+++++++-
T Consensus 35 k~vlITGasggIG~~la~~L~~~G~~V~~~~r 66 (279)
T 3ctm_A 35 KVASVTGSSGGIGWAVAEAYAQAGADVAIWYN 66 (279)
T ss_dssp CEEEETTTTSSHHHHHHHHHHHHTCEEEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566666542 667777778999998763
No 104
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=31.19 E-value=40 Score=24.77 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+...+.|+++++++-
T Consensus 29 ~ia~~l~~~G~~V~~~~r 46 (247)
T 3i1j_A 29 AAARAYAAHGASVVLLGR 46 (247)
T ss_dssp HHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHCCCEEEEEec
Confidence 566777889999998864
No 105
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=30.99 E-value=36 Score=25.11 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=19.6
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
++|-|.+|+|+ .+.+...+.|+++++++-
T Consensus 15 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r 46 (249)
T 3f9i_A 15 KTSLITGASSGIGSAIARLLHKLGSKVIISGS 46 (249)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcC
Confidence 34555444443 666777889999999875
No 106
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=30.83 E-value=51 Score=24.57 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=18.6
Q ss_pred EEEEEecCc-h---HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAA-Q---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg-~---~~i~~a~~~~~D~~ITGe 149 (159)
+++++||++ + .+.+...+.|+++++++-
T Consensus 17 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r 48 (278)
T 2bgk_A 17 KVAIITGGAGGIGETTAKLFVRYGAKVVIADI 48 (278)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 345555543 2 567777888999988753
No 107
>2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Methanocaldococcus jannaschii DSM2661} PDB: 3nek_A
Probab=30.81 E-value=1.1e+02 Score=23.61 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHhHhCCC-cEEEcCCCCce-------eEEEEEecCchHHHHHHHhcCCcEE
Q psy2388 92 IITIKDLFHHITRKIGKK-PIVIGDLNKKI-------YEIGWCTGAAQNLLTDAINEGVTAY 145 (159)
Q Consensus 92 ~~~~~~l~~~lk~~l~~~-~i~~~~~~~~i-------~rVai~~Gsg~~~i~~a~~~~~D~~ 145 (159)
|++..|-++.+-+.++.. .+.+|.+.+++ .++++++-+|...+..+.+.|.++=
T Consensus 158 P~~a~e~~~~il~~l~~~Gil~iG~p~~~vlgvpv~~~~~Giv~~GG~Npia~~~E~Gi~i~ 219 (238)
T 2qyx_A 158 HRVAREKLEEVLKKLNWNGIKAIGEPNNELYGIGVNKDMCGVVTMGGINPLVLLKENEIPIE 219 (238)
T ss_dssp ETTTHHHHHHHHHHHTCTTEEEECCTTCCBTTBCCCTTEEEEEEECTTHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHHHHHHHHhCCeEEeCCCCCcccCCcCCCCcEEEEEEecccHHHHHHHcCCeeE
Confidence 466666666666677665 45556544333 6899988888888888888998764
No 108
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=30.74 E-value=34 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=20.3
Q ss_pred EEEEEecCc--h----HHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAA--Q----NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg--~----~~i~~a~~~~~D~~ITGe~ 150 (159)
|++++||++ + .+.+...+.|+++++++--
T Consensus 21 k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~ 55 (267)
T 3gdg_A 21 KVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS 55 (267)
T ss_dssp CEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCC
Confidence 466666644 2 5677778899999988644
No 109
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=30.55 E-value=97 Score=19.10 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=27.5
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCCcEEEcC-CCCceeEEEE
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKKPIVIGD-LNKKIYEIGW 125 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~-~~~~i~rVai 125 (159)
.|+|.++ |+|.+|-+..+. .++.+...+-+ ....++-|.=
T Consensus 5 ~K~~~~k-pMsveEAv~qme-l~gh~F~vF~n~etg~~nVVYR 45 (65)
T 3ka5_A 5 TKRFAIK-PMSEEEAVLEME-LLGHNFFVFQNGDSNEVNVVYK 45 (65)
T ss_dssp EECSCCS-CBCHHHHHHHHH-HHTCSEEEEEETTTTEEEEEEE
T ss_pred EEeecCC-CCCHHHHHHHHH-hCCCcEEEEEeCCCCCEEEEEE
Confidence 5778886 999999888876 55888877743 3344544433
No 110
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=30.44 E-value=49 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.017 Sum_probs=18.3
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
+++++||+++ .+.+...+.|+++++++
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~ 62 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWD 62 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 4555555532 66777778899988875
No 111
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=29.51 E-value=1.2e+02 Score=20.22 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=27.5
Q ss_pred cCCccCH-------HHHHHHHHhHhCCCcEEEcCCCC-ceeE--EEEEecCch
Q psy2388 89 FKKIITI-------KDLFHHITRKIGKKPIVIGDLNK-KIYE--IGWCTGAAQ 131 (159)
Q Consensus 89 l~~~~~~-------~~l~~~lk~~l~~~~i~~~~~~~-~i~r--Vai~~Gsg~ 131 (159)
+| .-|+ .-+.++++++||+.+..++..+. .-.. ||+++++..
T Consensus 14 l~-~~SLKeKR~vvksl~~rlr~rFnVSvAEv~~qD~~q~a~igva~Vs~~~~ 65 (102)
T 1j27_A 14 TP-ARSLKEKRALIKPALERLKARFPVSAARLYGLDAWGYEVVGFTLLGNDPA 65 (102)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHSSCEEEEEECTTCSSEEEEEEEEEESCHH
T ss_pred Ee-CCChHHhHHHHHHHHHHHhhcCCeEEEEecCccccceEEEEEEEEECCHH
Confidence 55 5565 55899999999999888864332 2233 444566654
No 112
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=29.33 E-value=37 Score=25.88 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISG 148 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITG 148 (159)
|.+-+|=..+-+.++.+.|||++|.|
T Consensus 170 I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 170 IEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp EEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 56666666667888888999999999
No 113
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=29.28 E-value=47 Score=24.51 Aligned_cols=28 Identities=11% Similarity=0.022 Sum_probs=17.9
Q ss_pred EEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
+|.|.+|+|+ .+.+...+.|+++++++-
T Consensus 16 ~vlITGasggiG~~~a~~l~~~G~~V~~~~r 46 (265)
T 1h5q_A 16 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYR 46 (265)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEES
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 4444444433 566677788999988864
No 114
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=29.07 E-value=30 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.5
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.+-|.+|...++.+|...|++.++++
T Consensus 21 k~KflVp~~~tv~~~~~~lRkrL~l~ 46 (91)
T 4gdk_A 21 TKKWAVERTRTIQGLIDFIKKFLKLV 46 (91)
T ss_dssp CCEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 44577888999999999999999974
No 115
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=29.01 E-value=32 Score=22.68 Aligned_cols=30 Identities=3% Similarity=0.035 Sum_probs=23.9
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCCcEEE
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKKPIVI 113 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~ 113 (159)
.+-|.+|...++.+++..|++.++++.+.+
T Consensus 24 k~KflV~~~~t~~~~v~~lRkrL~l~alFl 53 (91)
T 3w1s_C 24 PSVCKISMSQSFAMVILFLKRRLKMDHVYC 53 (91)
T ss_dssp --EEEEETTSBHHHHHHHHHHHHTCSCCEE
T ss_pred ccEEEcCCCCCHHHHHHHHHHhhCCceEEE
Confidence 445778888999999999999999875443
No 116
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=28.77 E-value=47 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=19.7
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccCC
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~k 151 (159)
+.||++-|........+.|+.+|.+.+..
T Consensus 68 ~vi~~~iG~~a~~~L~~~GI~v~~~~~~~ 96 (124)
T 1eo1_A 68 AVIASSPGPNAFEVLNELGIKIYRATGTS 96 (124)
T ss_dssp EEEECCSSHHHHHHHHHHTCEEEECCSCC
T ss_pred EEEECCcCHHHHHHHHHCCCEEEEcCCCC
Confidence 45566777777777777788888764433
No 117
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=28.75 E-value=54 Score=24.87 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
+++++||+++ .+.+...+.|+++++++-
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r 58 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASR 58 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4556665543 567777888999988753
No 118
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=28.46 E-value=48 Score=25.13 Aligned_cols=29 Identities=14% Similarity=-0.044 Sum_probs=20.6
Q ss_pred EEEEEecCc------hHHHHHHHhcCCcEEEEccC
Q psy2388 122 EIGWCTGAA------QNLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg------~~~i~~a~~~~~D~~ITGe~ 150 (159)
|++++||++ ..+.+...+.|+++++++--
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~ 61 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG 61 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCc
Confidence 567777732 25677778899999988643
No 119
>4hdr_B ARSB; transferase; HET: DMD; 1.45A {Sporomusa ovata} PDB: 4hdm_B 4hdn_B 4hdk_B* 4hds_B
Probab=28.46 E-value=28 Score=28.64 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.2
Q ss_pred chHHHHHHHhcCCcEEEEccCC
Q psy2388 130 AQNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~ITGe~k 151 (159)
|..+.+++.+.|+|++++||+-
T Consensus 152 G~~~a~~~~~~G~~ll~~GEMG 173 (350)
T 4hdr_B 152 GVRIAQAEIARGCQVIGLGEMG 173 (350)
T ss_dssp HHHHHHHHHHTTCSEEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEecccC
Confidence 3355666778999999999974
No 120
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=28.23 E-value=47 Score=25.17 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+...+.|+++++++-
T Consensus 29 aia~~l~~~G~~V~~~~r 46 (269)
T 3vtz_A 29 AVVDALVRYGAKVVSVSL 46 (269)
T ss_dssp HHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 566777889999998763
No 121
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=28.08 E-value=75 Score=24.14 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=20.2
Q ss_pred EEecCchHHHHHHHh--cCCcEEEEccCCchh
Q psy2388 125 WCTGAAQNLLTDAIN--EGVTAYISGEISEST 154 (159)
Q Consensus 125 i~~Gsg~~~i~~a~~--~~~D~~ITGe~k~~~ 154 (159)
+..|+.+.++++..+ ..+|+|++++..+-+
T Consensus 37 ~~~~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~ 68 (292)
T 3cfz_A 37 REPAGSVACVRKIIDLGKKADILASADYSLIP 68 (292)
T ss_dssp EEEECHHHHHHHHHTSCCCCSEEEESSTTHHH
T ss_pred EEeCCHHHHHHHHHhcCCCCcEEEECChHHHH
Confidence 444555567766655 248999999877543
No 122
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=27.68 E-value=50 Score=24.58 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+...+.|+++++++-
T Consensus 29 ~ia~~l~~~G~~V~~~~r 46 (260)
T 2zat_A 29 AIARRLAQDGAHVVVSSR 46 (260)
T ss_dssp HHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 566667788999988753
No 123
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=27.61 E-value=47 Score=18.53 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHhCCCc
Q psy2388 95 IKDLFHHITRKIGKKP 110 (159)
Q Consensus 95 ~~~l~~~lk~~l~~~~ 110 (159)
+.||.+.++++||++.
T Consensus 18 ~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHCCCc
Confidence 4789999999999864
No 124
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=27.55 E-value=43 Score=25.65 Aligned_cols=32 Identities=6% Similarity=-0.107 Sum_probs=21.0
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEccCCchh
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
|-+..|+.+.+++++.+-.+|++++++.+..+
T Consensus 36 V~~~~~gSg~ll~qi~~G~aDV~isa~~~~~~ 67 (236)
T 3lr1_A 36 VDVIAVGTGQALKLGEAGDVDVVFVHARKLED 67 (236)
T ss_dssp EEEEEECHHHHHHHHHTTSCSEEEECCHHHHH
T ss_pred EEEEEcChHHHHHHHhcCCCCEEeecCchhHH
Confidence 33433444456777666669999999876554
No 125
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=27.35 E-value=48 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=19.2
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
|++++||+++ .+.+...+.|+.+++..
T Consensus 27 k~vlVTGas~gIG~~la~~l~~~G~~v~i~~ 57 (267)
T 4iiu_A 27 RSVLVTGASKGIGRAIARQLAADGFNIGVHY 57 (267)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5667776643 66777788999997754
No 126
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=26.94 E-value=61 Score=24.85 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=19.2
Q ss_pred EEEEEec-Cch---HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTG-AAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~G-sg~---~~i~~a~~~~~D~~ITGe 149 (159)
+.++++| +|+ .+.....+.|+++++++-
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R 151 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR 151 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 4455555 664 566677788999888753
No 127
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=26.89 E-value=61 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
+++++||+++ .+.+...+.|+++++++-
T Consensus 19 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r 50 (303)
T 1yxm_A 19 QVAIVTGGATGIGKAIVKELLELGSNVVIASR 50 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4556655543 566777788999988753
No 128
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=26.84 E-value=52 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITGe 149 (159)
+++++||+++ .+.+...+.|+.+++++-
T Consensus 29 k~vlITGasggIG~~la~~l~~~G~~V~~~~r 60 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLAKMGAHVVVTAR 60 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4566666543 566777788999988763
No 129
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=26.55 E-value=28 Score=23.18 Aligned_cols=31 Identities=3% Similarity=0.266 Sum_probs=25.1
Q ss_pred cccccccCCccCHHHHHHHHHhHhCCCcEEE
Q psy2388 83 NLKRYNFKKIITIKDLFHHITRKIGKKPIVI 113 (159)
Q Consensus 83 ~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~ 113 (159)
+.+.|.++..+++.+|...|++.++++.+.+
T Consensus 28 ~k~KflV~~~~t~~~~~~~lRkrL~l~alFl 58 (96)
T 1wz3_A 28 KQSKFKVSGSDKFANVIDFLRRQLHSDSLFV 58 (96)
T ss_dssp SCCEEEEETTSBTHHHHHHHHHHHTCSSCEE
T ss_pred cccEEEeCCCCcHHHHHHHHHHhcCCceEEE
Confidence 3456778888999999999999999885443
No 130
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=26.46 E-value=81 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCccCCCCCccChHHHHHHHHHhcCccE-EEeccC
Q psy2388 3 ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINL-YAYHLP 45 (159)
Q Consensus 3 adlIItHHp~~f~~~~~~~~~~~~~~~~~l~~~~I~v-y~~Ht~ 45 (159)
.+++++|||+.... ....+. ......+.+.++.+ ++=||.
T Consensus 150 ~~il~~H~p~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~GH~H 190 (228)
T 1uf3_A 150 PKIFLFHTMPYHKG--LNEQGS-HEVAHLIKTHNPLLVLVAGKG 190 (228)
T ss_dssp CEEEEESSCBCBTT--TBTTSB-HHHHHHHHHHCCSEEEECCSS
T ss_pred CeEEEEccCcccCC--ccccCH-HHHHHHHHHhCCCEEEEcccc
Confidence 46889999986531 111121 22223334455543 445776
No 131
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}
Probab=26.26 E-value=39 Score=29.36 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=21.0
Q ss_pred eEEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
.|++++||+++ .+.+...+.|+.+++++
T Consensus 19 gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~ 50 (613)
T 3oml_A 19 GRVAVVTGAGAGLGREYALLFAERGAKVVVND 50 (613)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEC-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 47888888764 55666678899999974
No 132
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=25.99 E-value=51 Score=25.41 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=56.7
Q ss_pred HHHHHHHhcCccEEEeccCCCCC--------CCCCHHHHHHHHcCCccccccccCCeeeEEEEccccccccCCccCHHHH
Q psy2388 27 KRLEQLIINKINLYAYHLPLDMH--------PKLGNNAQLAKILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDL 98 (159)
Q Consensus 27 ~~~~~l~~~~I~vy~~Ht~lD~~--------~~~G~n~~La~~Lgl~~~~~~~~~~~g~ig~~~~~~~~~l~~~~~~~~l 98 (159)
-.+..|++.|..|.+.++.+... .+.-.....|+.||+.-...- + -|. +..-+++|
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~----~--~g~----------~~~e~e~l 82 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGF----T--QGE----------KEKEVEDL 82 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEE----C------------------CHHHH
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEE----C--CCC----------chHHHHHH
Confidence 34456788888888887665432 122356677888887433210 0 011 11235666
Q ss_pred HHHHHhHhCCCcEEEcCCC---CceeEEEEEecCc------------hHHHHHHHhcCCcEEEEcc
Q psy2388 99 FHHITRKIGKKPIVIGDLN---KKIYEIGWCTGAA------------QNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 99 ~~~lk~~l~~~~i~~~~~~---~~i~rVai~~Gsg------------~~~i~~a~~~~~D~~ITGe 149 (159)
.+.+++. +...+.+|+-. ++-++=-+|...| ..++++..+.|.++.|+.=
T Consensus 83 ~~~l~~~-~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v 147 (237)
T 3rjz_A 83 KRVLSGL-KIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGV 147 (237)
T ss_dssp HHHHTTS-CCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhc-CCcEEEECCcchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 6666544 67777776531 1111111122221 3778888888999888763
No 133
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=25.72 E-value=1.1e+02 Score=20.22 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=9.3
Q ss_pred CceeEEEEEecCch
Q psy2388 118 KKIYEIGWCTGAAQ 131 (159)
Q Consensus 118 ~~i~rVai~~Gsg~ 131 (159)
.+.+||.+++|+|.
T Consensus 19 ~~~kkIlvvC~sG~ 32 (113)
T 1tvm_A 19 GSKRKIIVACGGAV 32 (113)
T ss_dssp CSSEEEEEESCSCS
T ss_pred ccccEEEEECCCCH
Confidence 34567888777763
No 134
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=25.70 E-value=95 Score=23.57 Aligned_cols=29 Identities=3% Similarity=0.008 Sum_probs=19.1
Q ss_pred EecCchHHHHHHHh--cCCcEEEEccCCchh
Q psy2388 126 CTGAAQNLLTDAIN--EGVTAYISGEISEST 154 (159)
Q Consensus 126 ~~Gsg~~~i~~a~~--~~~D~~ITGe~k~~~ 154 (159)
..|+.+.++++..+ ..+|+|++++..+-+
T Consensus 38 ~~~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~ 68 (296)
T 3cfx_A 38 EAAGSAQSVRKITELGKKADVLASADYALIP 68 (296)
T ss_dssp EECCHHHHHHHHHTSCCCCSEEEESSTTHHH
T ss_pred EeCchHHHHHHHHhCCCCCcEEEECChhhHH
Confidence 34555566666655 248999999877443
No 135
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=25.57 E-value=46 Score=23.65 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=19.0
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
++|.|.+|+|+ ...+.+...|++++.+.-
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~ 71 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAG 71 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC
Confidence 35655554553 567777778999887753
No 136
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=25.28 E-value=1.3e+02 Score=18.62 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=27.4
Q ss_pred cccccccCCccCHHHHHHHHHhHhCCCcEEEcC-CCCceeEEEE
Q psy2388 83 NLKRYNFKKIITIKDLFHHITRKIGKKPIVIGD-LNKKIYEIGW 125 (159)
Q Consensus 83 ~~~~~~l~~~~~~~~l~~~lk~~l~~~~i~~~~-~~~~i~rVai 125 (159)
+.|+|.++ |+|.+|-+..+. .++.+...+-+ ....++-|.=
T Consensus 5 r~K~~~~k-pMsveEAv~qMe-l~gh~F~vF~n~etg~~nVVYR 46 (66)
T 3lyv_A 5 RTKNVTLK-PMDVEEARLQME-LLGHDFFIYTDSEDGATNILYR 46 (66)
T ss_dssp CCCCCCCC-EECHHHHHHHHH-TTTCSEEEEEETTTCSEEEEEE
T ss_pred EEEEccCC-CCCHHHHHHHHH-cCCCcEEEEEeCCCCCEEEEEE
Confidence 35678886 999999888775 45888777733 3344554443
No 137
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=25.10 E-value=53 Score=24.36 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEEEecCc-h---HHHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAA-Q---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg-~---~~i~~a~~~~~D~~ITGe 149 (159)
++++++|++ + .+.+...+.|+++++++-
T Consensus 22 k~vlItGasggiG~~la~~l~~~G~~v~~~~r 53 (274)
T 1ja9_A 22 KVALTTGAGRGIGRGIAIELGRRGASVVVNYG 53 (274)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 345555553 2 667777888999988764
No 138
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=24.74 E-value=57 Score=22.59 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCcEEEEccCCc
Q psy2388 132 NLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe~k~ 152 (159)
...+...+.|||++|+|.+-.
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~ 90 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGS 90 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBH
T ss_pred HHHHHHHHcCCCEEEECCCCH
Confidence 455555566777777776644
No 139
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.37 E-value=1.4e+02 Score=18.81 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=34.3
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCc-hHHHHHHHhcCCcEEEEccCCchh
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAA-QNLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg-~~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
+| .++--++++++++.-. ...+. |-++|+.+ ......+.+.|+|-|++=-....+
T Consensus 56 ~p-~~~g~~~~~~l~~~~~---------~~~~p-ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~ 111 (122)
T 3gl9_A 56 MP-VMDGFTVLKKLQEKEE---------WKRIP-VIVLTAKGGEEDESLALSLGARKVMRKPFSPSQ 111 (122)
T ss_dssp CS-SSCHHHHHHHHHTSTT---------TTTSC-EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred CC-CCcHHHHHHHHHhccc---------ccCCC-EEEEecCCchHHHHHHHhcChhhhccCCCCHHH
Confidence 44 3567788888875321 12233 34445544 466778889999999987655444
No 140
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=24.31 E-value=1.1e+02 Score=24.70 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=24.5
Q ss_pred cEEEEcCCCCccCCCCCccC--hHHHHHHHHHhcCcc-EEEeccCCC
Q psy2388 4 DAILVHHGYFWKGENSNIVG--IKKKRLEQLIINKIN-LYAYHLPLD 47 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~~~~--~~~~~~~~l~~~~I~-vy~~Ht~lD 47 (159)
.++++|||++-........+ ...+....+.++++. +++=|+..-
T Consensus 280 ~Iv~~H~P~~~~~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~~ 326 (426)
T 1xzw_A 280 LIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSY 326 (426)
T ss_dssp EEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTTCSEEEECSSSSE
T ss_pred EEEEeccCceeCCCcccCCCHHHHHHHHHHHHHhCCCEEEEcChhhh
Confidence 36778998865332111122 223444556677876 477787654
No 141
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=24.25 E-value=62 Score=23.97 Aligned_cols=29 Identities=10% Similarity=-0.094 Sum_probs=19.1
Q ss_pred eEEEEEecC--c---hHHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGA--A---QNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gs--g---~~~i~~a~~~~~D~~ITGe 149 (159)
++|.|.+|+ + ..+.+...+.|+++++++-
T Consensus 15 k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r 48 (271)
T 3ek2_A 15 KRILLTGLLSNRSIAYGIAKACKREGAELAFTYV 48 (271)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEec
Confidence 355554444 3 2667777889999998853
No 142
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=24.24 E-value=59 Score=25.69 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.3
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITG 148 (159)
++|.|.+|+|+ ..++.|...|+.+++|.
T Consensus 169 ~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~ 199 (353)
T 4dup_A 169 ESVLIHGGTSGIGTTAIQLARAFGAEVYATA 199 (353)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe
Confidence 57888877664 56777778899988875
No 143
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=24.20 E-value=56 Score=24.24 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCcEEEEcc
Q psy2388 132 NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 132 ~~i~~a~~~~~D~~ITGe 149 (159)
.+.+...+.|+++++++-
T Consensus 29 ~la~~l~~~G~~V~~~~r 46 (266)
T 1xq1_A 29 AIVEEFAGFGAVIHTCAR 46 (266)
T ss_dssp HHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 566677788999888764
No 144
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=24.08 E-value=74 Score=19.94 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=18.7
Q ss_pred ccCCccCHHHHHHHHHhHhCCC
Q psy2388 88 NFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 88 ~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.++...++.+|.++|.+.++.+
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~ 40 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQ 40 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCC
Confidence 3666689999999999999875
No 145
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=24.01 E-value=43 Score=22.36 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=6.2
Q ss_pred HhcCCcEEEEccC
Q psy2388 138 INEGVTAYISGEI 150 (159)
Q Consensus 138 ~~~~~D~~ITGe~ 150 (159)
.++|||++|+|.+
T Consensus 60 ~~~gv~~vi~~~i 72 (121)
T 2yx6_A 60 KDHGAKIVLTYGI 72 (121)
T ss_dssp HHTTCCEEECSBC
T ss_pred HHcCCCEEEECCC
Confidence 3345555555544
No 146
>4hdr_A ARSA; transferase; HET: DMD; 1.45A {Sporomusa ovata} PDB: 4hdm_A 4hdn_A 4hdk_A* 4hds_A
Probab=23.50 E-value=32 Score=28.34 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=17.6
Q ss_pred chHHHHHHHhcCCcEEEEccCC
Q psy2388 130 AQNLLTDAINEGVTAYISGEIS 151 (159)
Q Consensus 130 g~~~i~~a~~~~~D~~ITGe~k 151 (159)
|....+++.+.|+|++++||+-
T Consensus 159 G~~~a~~~~~~G~~ll~~GEMG 180 (348)
T 4hdr_A 159 GIDIVNDRVKHGNRCFCLGEMG 180 (348)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEecccC
Confidence 3466777778899999999974
No 147
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=23.48 E-value=39 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=18.6
Q ss_pred EEecCch-HHHHHHHhcCCcEEEEccC
Q psy2388 125 WCTGAAQ-NLLTDAINEGVTAYISGEI 150 (159)
Q Consensus 125 i~~Gsg~-~~i~~a~~~~~D~~ITGe~ 150 (159)
+..|.-. .+++.+.+.++|+++-|--
T Consensus 89 ~~~g~~~~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 89 VAEGSPKDKILALAKSLPADLVIIASH 115 (143)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEESS
T ss_pred EEecChHHHHHHHHHHhCCCEEEEeCC
Confidence 4455544 5666667789999999965
No 148
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=23.40 E-value=84 Score=24.64 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=21.9
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
++|.|.+|+|+ ..++.|...|+.++.|.-
T Consensus 152 ~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~ 183 (346)
T 3fbg_A 152 KTLLIINGAGGVGSIATQIAKAYGLRVITTAS 183 (346)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 57888877775 556777778998888754
No 149
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=23.19 E-value=77 Score=22.92 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=18.4
Q ss_pred EEEEEecCch---HHHHHHHhcCC--cEEEEc
Q psy2388 122 EIGWCTGAAQ---NLLTDAINEGV--TAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~---~~i~~a~~~~~--D~~ITG 148 (159)
+|.|.+|+|. .+.+...+.|+ ++++++
T Consensus 20 ~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~ 51 (242)
T 2bka_A 20 SVFILGASGETGRVLLKEILEQGLFSKVTLIG 51 (242)
T ss_dssp EEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHcCCCCCEEEEEE
Confidence 4555555553 66777788898 888764
No 150
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=23.18 E-value=88 Score=23.76 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=27.4
Q ss_pred cEEEEcCCCCccCCCCC---ccChHHHHHHHHHhcCcc-EEEeccCCCC
Q psy2388 4 DAILVHHGYFWKGENSN---IVGIKKKRLEQLIINKIN-LYAYHLPLDM 48 (159)
Q Consensus 4 dlIItHHp~~f~~~~~~---~~~~~~~~~~~l~~~~I~-vy~~Ht~lD~ 48 (159)
.+|++|||++....... ......+....+.+.++. +++=||....
T Consensus 176 ~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~~~l~~~~v~~v~~GH~H~~~ 224 (330)
T 3ib7_A 176 TILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYST 224 (330)
T ss_dssp EEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEEEEECSSSSCE
T ss_pred eEEEEECCCCCCCccccccccccCHHHHHHHHhccCceEEEECCCCCcc
Confidence 47999999987543211 111234555666667775 5677887664
No 151
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=23.16 E-value=1.1e+02 Score=22.50 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=23.3
Q ss_pred ccEEEEcCCCCccCCCCC---ccChHHHHHHHHHhc-Cc-cEEEeccCCCC
Q psy2388 3 ADAILVHHGYFWKGENSN---IVGIKKKRLEQLIIN-KI-NLYAYHLPLDM 48 (159)
Q Consensus 3 adlIItHHp~~f~~~~~~---~~~~~~~~~~~l~~~-~I-~vy~~Ht~lD~ 48 (159)
-.++++|||++....... ......+....+.+. ++ .+++=|+....
T Consensus 150 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~ 200 (274)
T 3d03_A 150 PATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLT 200 (274)
T ss_dssp CEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEECSSSSCE
T ss_pred CEEEEECCCCcccCCcccCcccCcCHHHHHHHHHhCCCceEEEeCCCCCch
Confidence 357899999875432110 001122333444454 65 44566776653
No 152
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=23.02 E-value=46 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.4
Q ss_pred cccccCCccCHHHHHHHHHhHhCCC
Q psy2388 85 KRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 85 ~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
+-|++|..+|+.+|...|++.++++
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~ 79 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLR 79 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCC
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCC
Confidence 4466888899999999999999874
No 153
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=22.91 E-value=60 Score=21.60 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=5.5
Q ss_pred hcCCcEEEEccC
Q psy2388 139 NEGVTAYISGEI 150 (159)
Q Consensus 139 ~~~~D~~ITGe~ 150 (159)
+.|||++|+|.+
T Consensus 65 ~~gv~~vi~~~i 76 (120)
T 2wfb_A 65 KSGAGVLLTGYV 76 (120)
T ss_dssp HHTEEEEECSCC
T ss_pred HCCCCEEEECCC
Confidence 344444444443
No 154
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=22.86 E-value=50 Score=22.85 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=9.2
Q ss_pred EecCchHHHHHHHhcCCcEEE
Q psy2388 126 CTGAAQNLLTDAINEGVTAYI 146 (159)
Q Consensus 126 ~~Gsg~~~i~~a~~~~~D~~I 146 (159)
|++-|....+...+.|+.+|.
T Consensus 82 ~g~IG~~a~~~L~~~GI~v~~ 102 (136)
T 1o13_A 82 VRGIGRRAIAAFEAMGVKVIK 102 (136)
T ss_dssp CSCCCHHHHHHHHHTTCEEEC
T ss_pred ECCCCHHHHHHHHHCCCEEEe
Confidence 334444444444444555443
No 155
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=22.67 E-value=47 Score=22.89 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.3
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.+.|++|..+|+.+|...|++.++++
T Consensus 48 k~KflVp~~~tv~qf~~~iRkrl~l~ 73 (118)
T 3rui_B 48 KRKYLVPADLTVGQFVYVIRKRIMLP 73 (118)
T ss_dssp CCEEEEETTSBHHHHHHHHHHHTTCC
T ss_pred cceEEcCCCCCHHHHHHHHHHHhCcC
Confidence 44577888999999999999999874
No 156
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=22.57 E-value=47 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=16.1
Q ss_pred EEEEEecCch----HHHHHHHhcCC---cEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGV---TAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~---D~~ITG 148 (159)
|++++||+++ .+.+...+.|+ .+++++
T Consensus 34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~ 67 (287)
T 3rku_A 34 KTVLITGASAGIGKATALEYLEASNGDMKLILAA 67 (287)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEE
Confidence 5666666653 44445555666 777765
No 157
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=22.50 E-value=82 Score=24.01 Aligned_cols=33 Identities=9% Similarity=-0.186 Sum_probs=21.8
Q ss_pred CCceeEEEEEecCch---HHHHHHHhcCCcEEEEcc
Q psy2388 117 NKKIYEIGWCTGAAQ---NLLTDAINEGVTAYISGE 149 (159)
Q Consensus 117 ~~~i~rVai~~Gsg~---~~i~~a~~~~~D~~ITGe 149 (159)
..+-.+|.|.+|+|. .+.+...+.|.+++++.-
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 46 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVA 46 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeC
Confidence 345678888877774 667777788988887653
No 158
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=22.49 E-value=60 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEEcc
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYISGE 149 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~ITGe 149 (159)
|.+.+|=..+-+.++.+.|+|+++.|-
T Consensus 176 i~v~GGI~~~ni~~~~~aGaD~vvvGs 202 (228)
T 1h1y_A 176 IEVDGGLGPSTIDVAASAGANCIVAGS 202 (228)
T ss_dssp EEEESSCSTTTHHHHHHHTCCEEEESH
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEECH
Confidence 555666666667777778999999884
No 159
>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*
Probab=22.16 E-value=52 Score=27.41 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=18.2
Q ss_pred eEEEEEecCchHH-----HHHH-HhcCCcEEEEcc
Q psy2388 121 YEIGWCTGAAQNL-----LTDA-INEGVTAYISGE 149 (159)
Q Consensus 121 ~rVai~~Gsg~~~-----i~~a-~~~~~D~~ITGe 149 (159)
.|++++||+++.+ +..+ .+.|+++++++-
T Consensus 60 gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r 94 (418)
T 4eue_A 60 PKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSY 94 (418)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4678888876422 3233 345999988753
No 160
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=21.74 E-value=76 Score=24.01 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=18.1
Q ss_pred EEEEEecCch----HHHHHHHhcCCcEEEEc
Q psy2388 122 EIGWCTGAAQ----NLLTDAINEGVTAYISG 148 (159)
Q Consensus 122 rVai~~Gsg~----~~i~~a~~~~~D~~ITG 148 (159)
+++++||+++ .+.+...+.|+++++++
T Consensus 45 k~vlITGasggIG~~la~~L~~~G~~V~~~~ 75 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKSVSHVICIS 75 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEc
Confidence 4555555543 56667777899998865
No 161
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=21.67 E-value=91 Score=24.15 Aligned_cols=28 Identities=11% Similarity=-0.117 Sum_probs=19.5
Q ss_pred eEEEEEecCch---HHHHHHHhcCCcEEEEc
Q psy2388 121 YEIGWCTGAAQ---NLLTDAINEGVTAYISG 148 (159)
Q Consensus 121 ~rVai~~Gsg~---~~i~~a~~~~~D~~ITG 148 (159)
++|.|.+++|+ ..++.+...|++++++.
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~ 177 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA 177 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 45666655454 56777778899988875
No 162
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=21.42 E-value=1.3e+02 Score=24.28 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=25.2
Q ss_pred EEEEcCCCCccCCC---CCccChHHHHHHHHHhcCcc-EEEeccCCCC
Q psy2388 5 AILVHHGYFWKGEN---SNIVGIKKKRLEQLIINKIN-LYAYHLPLDM 48 (159)
Q Consensus 5 lIItHHp~~f~~~~---~~~~~~~~~~~~~l~~~~I~-vy~~Ht~lD~ 48 (159)
++++|||+.-.... ........+..+.+.+.++. +++=|+....
T Consensus 239 Iv~~H~p~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~lvl~GH~H~~~ 286 (443)
T 2xmo_A 239 IPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQN 286 (443)
T ss_dssp EEECSSBSSCSSCC--CCSBCTTHHHHHHHHHHTTCCEEEECSSCSCE
T ss_pred EEEECCCCcccccccccccccccHHHHHHHHHHcCCeEEEECCcccCc
Confidence 78999998653211 01111234555666667774 4666777654
No 163
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=21.23 E-value=1.8e+02 Score=19.01 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=18.2
Q ss_pred EEecCch-HHHHHHHhcCCcEEEEccCCc
Q psy2388 125 WCTGAAQ-NLLTDAINEGVTAYISGEISE 152 (159)
Q Consensus 125 i~~Gsg~-~~i~~a~~~~~D~~ITGe~k~ 152 (159)
+..|.-. .+++.|.+.++|++|-|--..
T Consensus 92 ~~~g~~~~~I~~~a~~~~~dliV~G~~~~ 120 (150)
T 3tnj_A 92 LVWGEPREEIIRIAEQENVDLIVVGSHGR 120 (150)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEEEC--
T ss_pred EecCCHHHHHHHHHHHcCCCEEEEecCCC
Confidence 4455554 566666777999999886543
No 164
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=21.18 E-value=1.7e+02 Score=21.79 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcCccE-EEeccCCCCCCCCCHHHHHHHH
Q psy2388 24 IKKKRLEQLIINKINL-YAYHLPLDMHPKLGNNAQLAKI 61 (159)
Q Consensus 24 ~~~~~~~~l~~~~I~v-y~~Ht~lD~~~~~G~n~~La~~ 61 (159)
...++.+.|.++|+.| |+.|----.-|+ -+|-.||++
T Consensus 49 ~v~el~~~L~~~G~~V~faIHPVAGRMPG-hMNVLLAEA 86 (186)
T 2bru_C 49 PVAEITEKLRARGINVRFGIHPVAGRLPG-HMNVLLAEA 86 (186)
T ss_dssp HHHHHHHHHHHHCCEEEEEECSSSSSSSS-THHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeccccccCCC-cceEEEEec
Confidence 3578999999999999 999987777777 899999985
No 165
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=20.94 E-value=80 Score=24.25 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=20.0
Q ss_pred CceeEEEEEecCch---HHHHHHHhcCCcEEEEc
Q psy2388 118 KKIYEIGWCTGAAQ---NLLTDAINEGVTAYISG 148 (159)
Q Consensus 118 ~~i~rVai~~Gsg~---~~i~~a~~~~~D~~ITG 148 (159)
.+-++|.|.+|+|. .+.+...+.|.+|+++.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~ 50 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFD 50 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEe
Confidence 34456777666663 67777788899998764
No 166
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.93 E-value=55 Score=20.82 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.6
Q ss_pred cCCccCHHHHHHHHHhHhCCC
Q psy2388 89 FKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~ 109 (159)
+|..+++.+|.++++++|+..
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT
T ss_pred eCCCCCHHHHHHHHHHHHccc
Confidence 677899999999999999953
No 167
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=20.86 E-value=77 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.9
Q ss_pred ceeEEEEEecCchHHHHHHHhc
Q psy2388 119 KIYEIGWCTGAAQNLLTDAINE 140 (159)
Q Consensus 119 ~i~rVai~~Gsg~~~i~~a~~~ 140 (159)
..+||.|++|+++...+++.+.
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~ 104 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRH 104 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTC
T ss_pred CCCeEEEECCCchHHHHHHHHc
Confidence 4679999999999999988775
No 168
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=20.82 E-value=1.1e+02 Score=19.73 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=34.6
Q ss_pred cCCccCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCch-HHHHHHHhcCCcEEEEccCCchh
Q psy2388 89 FKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQ-NLLTDAINEGVTAYISGEISEST 154 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~-~~i~~a~~~~~D~~ITGe~k~~~ 154 (159)
+| .++--++++.+++.... .+ .|-++|+... ....++.+.|++-|++=-+...+
T Consensus 62 mp-~~~G~~~~~~lr~~~~~----------~~-~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 116 (133)
T 2r25_B 62 MP-KVDGLLSTKMIRRDLGY----------TS-PIVALTAFADDSNIKECLESGMNGFLSKPIKRPK 116 (133)
T ss_dssp CS-SSCHHHHHHHHHHHSCC----------CS-CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred CC-CCChHHHHHHHHhhcCC----------CC-CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 44 35667888888764321 12 3555666554 56778889999999986555443
No 169
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=20.82 E-value=59 Score=24.71 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=22.2
Q ss_pred EEEEEecCchH-----------HHHHHHhcCCcEEEEcc
Q psy2388 122 EIGWCTGAAQN-----------LLTDAINEGVTAYISGE 149 (159)
Q Consensus 122 rVai~~Gsg~~-----------~i~~a~~~~~D~~ITGe 149 (159)
.|.|.+|-+.. -.+++.+.|+|+++.|-
T Consensus 184 ~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr 222 (245)
T 1eix_A 184 FKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGR 222 (245)
T ss_dssp SEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECH
T ss_pred CEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECH
Confidence 36777776654 68888999999999884
No 170
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=20.70 E-value=93 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=23.8
Q ss_pred EEEEEecCchHHHHHHHh--cCCcEEEEccC
Q psy2388 122 EIGWCTGAAQNLLTDAIN--EGVTAYISGEI 150 (159)
Q Consensus 122 rVai~~Gsg~~~i~~a~~--~~~D~~ITGe~ 150 (159)
.|.+-+|=..+-+..+.+ .|||.++.|-.
T Consensus 189 ~I~vdGGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 189 LINIDGSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp EEEEESSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred eEEEECCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 366777777788889999 99999999954
No 171
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=20.67 E-value=74 Score=20.82 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=29.6
Q ss_pred cCCccCHHHHHHHHHhHhCCC---c--EEEcCC-CCceeEEEEEecCchHHHHHHHh
Q psy2388 89 FKKIITIKDLFHHITRKIGKK---P--IVIGDL-NKKIYEIGWCTGAAQNLLTDAIN 139 (159)
Q Consensus 89 l~~~~~~~~l~~~lk~~l~~~---~--i~~~~~-~~~i~rVai~~Gsg~~~i~~a~~ 139 (159)
+|.++++++|.+++++.++.. . +.|-|. ..+ |+=|....+++|.+
T Consensus 22 v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~------itisSd~EL~eAl~ 72 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDP------CTVSSQLELEEAFR 72 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCC------EECCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCc------ccccCHHHHHHHHH
Confidence 788899999999999999963 2 344332 222 23345555666655
No 172
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=20.64 E-value=56 Score=22.57 Aligned_cols=26 Identities=4% Similarity=0.167 Sum_probs=22.4
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.+-|++|..+|+.+|...|++.++++
T Consensus 49 k~KflVp~~~tv~qf~~~iRkrl~l~ 74 (119)
T 3h9d_A 49 RCKFLVPSDLTVGQFVSVLRKRVQLE 74 (119)
T ss_dssp SCEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred cceEEcCCCCCHHHHHHHHHHHhCCC
Confidence 44567888999999999999999875
No 173
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=20.60 E-value=96 Score=21.71 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=13.5
Q ss_pred EEEEecCchHHHHHHHhcCCcEEEE
Q psy2388 123 IGWCTGAAQNLLTDAINEGVTAYIS 147 (159)
Q Consensus 123 Vai~~Gsg~~~i~~a~~~~~D~~IT 147 (159)
+-+|+|-|........+.|+++|.+
T Consensus 70 vvi~~~iG~~a~~~L~~~GI~v~~~ 94 (145)
T 1p90_A 70 VLYVVSIGGPAAAKVVRAGIHPLKK 94 (145)
T ss_dssp EEEESBCCHHHHHHHHHTTCEEEEC
T ss_pred EEEECCCCHHHHHHHHHcCCEEEEe
Confidence 3445555555555555556666554
No 174
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=20.47 E-value=65 Score=23.79 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=18.0
Q ss_pred EecCchHHHHHHHh-cCCcEEEEccCCchh
Q psy2388 126 CTGAAQNLLTDAIN-EGVTAYISGEISEST 154 (159)
Q Consensus 126 ~~Gsg~~~i~~a~~-~~~D~~ITGe~k~~~ 154 (159)
..|+.+.++++..+ ..+|+|++++..+-+
T Consensus 39 ~~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~ 68 (237)
T 3r26_A 39 SFASSSTLARQIEAGAPADLFISADQKWMD 68 (237)
T ss_dssp EEECHHHHHHHHHHTCCCSEEECSSHHHHH
T ss_pred EECCHHHHHHHHHcCCCceEEEECCHHHHH
Confidence 33555556666544 348999999865433
No 175
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=20.31 E-value=54 Score=23.01 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=22.5
Q ss_pred ccccccCCccCHHHHHHHHHhHhCCC
Q psy2388 84 LKRYNFKKIITIKDLFHHITRKIGKK 109 (159)
Q Consensus 84 ~~~~~l~~~~~~~~l~~~lk~~l~~~ 109 (159)
.+-|++|..+|+.+|...|++.++++
T Consensus 54 k~KflVp~~~tv~qf~~~iRkrL~l~ 79 (130)
T 2zjd_A 54 KTKFLVPDHVNMSELIKIIRRRLQLN 79 (130)
T ss_dssp CCEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred ccEEEcCCCCcHHHHHHHHHHHhCCC
Confidence 44567888899999999999999886
No 176
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.22 E-value=1e+02 Score=19.52 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHhHhCCCcEEEcCCCCceeEEEEEecCchHHHHHHHhcCCcEEEEccCCchhh
Q psy2388 93 ITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISESTK 155 (159)
Q Consensus 93 ~~~~~l~~~lk~~l~~~~i~~~~~~~~i~rVai~~Gsg~~~i~~a~~~~~D~~ITGe~k~~~~ 155 (159)
.+-.++++.+++... .....|.+.++.....+.++.+.|++-|++--....+.
T Consensus 63 ~~g~~~~~~l~~~~~----------~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l 115 (132)
T 3lte_A 63 LDGLDVIRSLRQNKV----------ANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDAL 115 (132)
T ss_dssp BCHHHHHHHHHTTTC----------SSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHH
T ss_pred CCHHHHHHHHHhcCc----------cCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHH
Confidence 567788888875421 12235666666666677788899999999866554443
Done!