RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2388
         (159 letters)



>gnl|CDD|182741 PRK10799, PRK10799, metal-binding protein; Provisional.
          Length = 247

 Score =  142 bits (360), Expect = 4e-43
 Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 13/154 (8%)

Query: 3   ADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKIL 62
           ADA++VHHGYFWKGE+  I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA +L
Sbjct: 57  ADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALL 116

Query: 63  NFSCTRRFSKNNIGWIGKIINLKRYN-FKKIITIKDLFHHITRKIGKKPIVIGDLN-KKI 120
                       I  +G+I  L  +      +   +L   I  ++G+KP+  GD   + +
Sbjct: 117 -----------GITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVV 165

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
             + WCTG  Q+ +  A   GV A+I+GE+SE T
Sbjct: 166 QRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199


>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function
           unknown].
          Length = 250

 Score =  122 bits (307), Expect = 5e-35
 Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)

Query: 1   MNADAILVHHG-YFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
           + AD ++VHH   FW  ++  I G K KR++ LI N INLYA H  LD HP+ GN+A  A
Sbjct: 56  LGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGGNDALAA 115

Query: 60  KILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNK 118
            +L       F    +G +G          K+  T+++L   I  K+G+ P+ V+ D ++
Sbjct: 116 ALLGAEELPPF-GEGLGRVG--------ELKEPTTLEELAERIKAKLGRPPLRVVKDGSE 166

Query: 119 KIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           +I  +  C+G+ Q  L++A  EGV AYI+G++S  T
Sbjct: 167 EIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHT 202


>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3).  This family
           contains several NIF3 (NGG1p interacting factor 3)
           protein homologues. NIF3 interacts with the yeast
           transcriptional coactivator NGG1p which is part of the
           ADA complex, the exact function of this interaction is
           unknown.
          Length = 237

 Score =  116 bits (294), Expect = 4e-33
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 1   MNADAILVHHGYFWKGENSNI-VGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
             AD I+ HH   +K          K +R+ +LI N I+LY+ H  LD  P  G N  LA
Sbjct: 52  NGADLIITHHPLIFKPLKRITGDDPKGRRILKLIKNNISLYSAHTNLDAAPG-GVNDWLA 110

Query: 60  KILNFSCTRRFSKN-----NIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VI 113
           ++L          +      +G IG++         + I++++L   +  ++G + + V+
Sbjct: 111 ELLGLESIEPLEPSVSEGEGLGRIGEL--------PEPISLEELAKRVKERLGLEGVRVV 162

Query: 114 GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
           GDL+K I ++  C G+  +L+ +A  +G    I+GE+    
Sbjct: 163 GDLDKPIKKVAICGGSGGSLIEEAKAKGADLLITGELKHHD 203


>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388
           family.  The characterization of this family of
           uncharacterized proteins as orthologous is tentative.
           Members are found in all three domains of life. Several
           members (from Bacillus subtilis, Listeria monocytogenes,
           and Mycobacterium tuberculosis - all classified as
           Firmicutes within the Eubacteria) share a long insert
           relative to other members [Unknown function, General].
          Length = 249

 Score =  114 bits (288), Expect = 3e-32
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 2   NADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKI 61
            AD I+ HH   WK     I GIK  RL+ L+ N I+LY+ H  LD H   GNN  LA+ 
Sbjct: 57  GADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSAHTNLDAHD-GGNNDALARA 115

Query: 62  LNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNK-KI 120
           L     + F    +G +G+        FK  I   +    I + +  KP+++       +
Sbjct: 116 LGLENPKEFEDYGLGRVGE--------FKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYV 167

Query: 121 YEIGWCTGAAQNLLTDAINEGVTAYISGEISESTK 155
            ++   +G+  + +  A+ EGV AYI+G++S  T 
Sbjct: 168 KKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTA 202


>gnl|CDD|218473 pfam05159, Capsule_synth, Capsule polysaccharide biosynthesis
           protein.  This family includes export proteins involved
           in capsule polysaccharide biosynthesis, such as KpsS and
           LipB.
          Length = 268

 Score = 33.1 bits (76), Expect = 0.044
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 6   ILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAY-HLPLDM-----HPKLGNNAQLA 59
           I +  G+      S  +G        L+++KI +Y    LP D+        + + A LA
Sbjct: 28  IRLEDGFL----RSLGLGSNGYPPYSLVLDKIGIYYDSSLPSDLEQLLSEKSVLDQAGLA 83

Query: 60  ---KILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITI 95
               ++N   T + SK N+        L     KKI+ +
Sbjct: 84  RAEYLMNRIVTHKLSKYNLRRAAPAFRLLLAKDKKIVLV 122


>gnl|CDD|237738 PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.
          Length = 497

 Score = 27.1 bits (61), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 96  KDLFHHITRKIGKKPIVIGDL 116
           KDLF  +  ++G  PI+  DL
Sbjct: 326 KDLFEAVKEELGDLPIIAEDL 346


>gnl|CDD|217463 pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal
           region.  Within the NapC/NirT family of cytochrome c
           proteins, some members, such as NapC and NirT, bind four
           haem groups, while others, such as TorC, bind five
           haems. This family aligns the common N-terminal region
           that contains four haem-binding C-X(2)-CH motifs.
          Length = 174

 Score = 26.5 bits (59), Expect = 5.8
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 7/31 (22%)

Query: 77  WIGKIINLKRYNFKKIITIKDLFHHITRKIG 107
           WI K+I       +K    K+++  +T  I 
Sbjct: 77  WIDKLI-------RKAQASKEVYAELTGTID 100


>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function
           prediction only].
          Length = 423

 Score = 26.2 bits (58), Expect = 9.4
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 82  INLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCTGAAQNL 133
             L R +    +T  DLF +  ++ G    +    N+ + EI  C       
Sbjct: 117 GELVRRHAGPYLTYVDLFSYHAQENGN---LTETPNENVIEIAQCRKIKPVP 165


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,208,647
Number of extensions: 767596
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 28
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)