RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2388
(159 letters)
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 100 bits (249), Expect = 3e-27
Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 11/155 (7%)
Query: 1 MNADAILVHHGYFWKGENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
+ ADA++VHHGYFWKGE+ I G+K+ RL+ L+ N INLY +HLPLD HP+LGNNAQLA
Sbjct: 55 LGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAA 114
Query: 61 ILNFSCTRRFSKNNIGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVIG-DLNKK 119
+L + + +L I ++G+KP+ G +
Sbjct: 115 LLGITVMGEIEPLVPWG----------ELTMPVPGLELASWIEARLGRKPLWCGDTGPEV 164
Query: 120 IYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
+ + WCTG Q+ + A GV A+I+GE+SE T
Sbjct: 165 VQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQT 199
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 265
Score = 85.5 bits (211), Expect = 2e-21
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 20/163 (12%)
Query: 2 NADAILVHHGYFWKGENSNIVGIKKKRLE-QLIINKINLYAYHLPLDMHPKLGNNAQLAK 60
D I+V H ++ + + ++ LI + I +Y H +D+ G N +
Sbjct: 57 GVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVEN-GLNDWFCQ 115
Query: 61 ILNFSCTRRFSKNN----IGWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPIVI--- 113
+L T + IG IG I T +L + + + +
Sbjct: 116 MLGIEETTYLQETGPERGIGRIGNIQP---------QTFWELAQQVKQVFDLDSLRMVHY 166
Query: 114 --GDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISGEISEST 154
DL K I + C G+ Q+ DA+ +G YI+G+I T
Sbjct: 167 QEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYYHT 209
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 69.3 bits (169), Expect = 4e-15
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 1 MNADAILVHHGYFWKGENS-NIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLA 59
+ A+ I+ HH + + + K +E+ I N I +YA H +D+ G N LA
Sbjct: 57 LGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKG-GVNDLLA 115
Query: 60 KILNFSCTRRFS 71
+ L T +
Sbjct: 116 EALGLQNTEVLA 127
Score = 52.8 bits (126), Expect = 2e-09
Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 14/140 (10%)
Query: 16 GENSNIVGIKKKRLEQLIINKINLYAYHLPLDMHPKLGNNAQLAKILNFSCTRRFSKNNI 75
GE + +++ R+E +I + + HP + + N + +
Sbjct: 188 GETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDN-----KGETLGL 242
Query: 76 GWIGKIINLKRYNFKKIITIKDLFHHITRKIGKKPI-VIGDLNKKIYEIGWCTGAAQNLL 134
G IG ++ +T+ H+ + + K V+G L+ K+ ++ G +
Sbjct: 243 GKIGY--------LQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYI 294
Query: 135 TDAINEGVTAYISGEISEST 154
A +G Y++G++
Sbjct: 295 NQAKFKGADVYVTGDMYYHV 314
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
subtilis [TaxId: 1423]}
Length = 177
Score = 25.5 bits (56), Expect = 2.8
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 107 GKKPIVIGDLNKKIYEIGWCTGAAQNLLTDAINEGVTAYISG 148
G KP +G + + + A +N L ++EG+ +
Sbjct: 8 GYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILIS 49
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes
lepiniana) [TaxId: 282652]}
Length = 206
Score = 25.5 bits (55), Expect = 2.9
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 65 SCTRRFSKNNIGWIGKIINL-KRYNFKKI-------------ITIKDLFHHITRKIGKKP 110
+C K + K + L +YN K +KD+ + +G +P
Sbjct: 104 TCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARP 163
Query: 111 IVIGDLNKKIYEIGWC 126
+ D + ++ C
Sbjct: 164 KLRCDEEGLVQKLSLC 179
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 96
Score = 24.6 bits (54), Expect = 3.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1 MNADAILVHHGYFW 14
+N D I+V HG F
Sbjct: 55 LNDDGIVVPHGSFV 68
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 25.1 bits (53), Expect = 4.3
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 94 TIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWCT 127
T L ++ +G+ V+G + + T
Sbjct: 18 TTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPT 51
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 24.7 bits (52), Expect = 6.4
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 94 TIKDLFHHITRKIGKKPIVIGDLNKKIYEIGWC 126
++K++ I + G G+LN I
Sbjct: 15 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTL 47
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 215
Score = 24.2 bits (52), Expect = 7.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 116 LNKKIYEIGW--CTGAAQNLLTDAINEGVTAYISGEI 150
L K++ +I G L T+ + + V YI+ I
Sbjct: 107 LEKQLLDIIKNNTGGELSKLSTNLVMQEVMPYIASCI 143
>d1fyhb2 b.1.2.1 (B:110-223) Interferon-gamma receptor alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 23.3 bits (50), Expect = 10.0
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 82 INLKRYNFKKIITIKDLFHHITRKIGKKPIVIGDLNKKIYE 122
+++++ + +I I FH G + V D Y
Sbjct: 6 LDIRKEEKQIMIDI---FHPSVFVNGDEQEVDYDPETTCYI 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,070
Number of extensions: 30381
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 25
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.4 bits)