BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2389
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9I425|CYOC_PSEAE Cytochrome o ubiquinol oxidase subunit 3 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=cyoC PE=3 SV=1
Length = 209
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 121/171 (70%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
M+DC++F+S+FA YAVL H+ A GP+ IF+LP V + T ILL+SS + G A++ A K
Sbjct: 39 MTDCVLFASVFATYAVLVHHTAGGPSGKDIFELPYVLVETAILLVSSCTYGLAMLSAHKG 98
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
I WL +T LLG F+ +E+NEF LI FGP RSAFLSSFF LVGMHGLH+ G
Sbjct: 99 AKGQAIAWLGVTFLLGAAFIGMEINEFHHLIAEGFGPSRSAFLSSFFTLVGMHGLHVSAG 158
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
++W++ L+ QI L +N R++CLS+FWHFLDI+WI +FT +YL+G L
Sbjct: 159 LLWMLVLMAQIWTRGLTAQNNTRMMCLSLFWHFLDIVWICVFTVVYLMGAL 209
>sp|Q9WWR3|CYOC_PSEPU Cytochrome o ubiquinol oxidase subunit 3 OS=Pseudomonas putida
GN=cyoC PE=3 SV=1
Length = 207
Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 119/171 (69%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
M+DC++F+SLFA YAVL ++A GP+ IF+L VA+ T+ LLLSS++ GFA+++
Sbjct: 37 MTDCILFASLFATYAVLSGSFAGGPSGHDIFQLDFVAVETLFLLLSSITFGFAMLKMFDG 96
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
GV+ WL++T L G F+ +E+ EF LI FGP RS FLS FF LVG HGLH+ G
Sbjct: 97 KKAGVLGWLAVTFLFGAGFIAMEIYEFHHLIAEGFGPQRSGFLSGFFALVGTHGLHVTAG 156
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+IW+ ++ QI K+ + + R+ CLS+FWHFLD++WI +FT +YL+G L
Sbjct: 157 LIWMAIMMYQINKHGITPTAKTRMSCLSLFWHFLDVVWICVFTVVYLLGVL 207
>sp|P0ABJ5|CYOC_SHIFL Cytochrome o ubiquinol oxidase subunit 3 OS=Shigella flexneri
GN=cyoC PE=3 SV=1
Length = 204
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 116/171 (67%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++FS LFA YAVL + A GPT IF+LP V + T +LL SS++ G A I K
Sbjct: 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ VI WL++T L G F+ +E+ EF LI GP RS FLS+FF LVG HGLH+ G
Sbjct: 94 NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+IW+ L++QI + L N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204
>sp|P0ABJ3|CYOC_ECOLI Cytochrome o ubiquinol oxidase subunit 3 OS=Escherichia coli
(strain K12) GN=cyoC PE=1 SV=1
Length = 204
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 116/171 (67%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++FS LFA YAVL + A GPT IF+LP V + T +LL SS++ G A I K
Sbjct: 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ VI WL++T L G F+ +E+ EF LI GP RS FLS+FF LVG HGLH+ G
Sbjct: 94 NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+IW+ L++QI + L N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204
>sp|P0ABJ4|CYOC_ECOL6 Cytochrome o ubiquinol oxidase subunit 3 OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=cyoC PE=3 SV=1
Length = 204
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 116/171 (67%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++FS LFA YAVL + A GPT IF+LP V + T +LL SS++ G A I K
Sbjct: 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ VI WL++T L G F+ +E+ EF LI GP RS FLS+FF LVG HGLH+ G
Sbjct: 94 NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+IW+ L++QI + L N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204
>sp|P57542|CYOC_BUCAI Cytochrome o ubiquinol oxidase subunit 3 OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=cyoC PE=3
SV=1
Length = 205
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 121/171 (70%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++F+ LFA+YA++ N + + +IF L S+ L T +LLLSSLSCGF +I +K
Sbjct: 35 MSDCIMFAVLFAVYAIVSSNISINLISNKIFNLSSILLETFLLLLSSLSCGFVVIAMNQK 94
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ + +L+IT + G F+++E++EF ELI NFGP ++AF S FF LV HG+HI FG
Sbjct: 95 RIKMIYSFLTITFIFGLIFLLMEVHEFYELIIENFGPDKNAFFSIFFTLVATHGVHIFFG 154
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+I +++++ QIKK L + RI+C S+FWHFLDIIWI +FTF+YL G +
Sbjct: 155 LILILSILYQIKKLGLTNSIRTRILCFSVFWHFLDIIWICVFTFVYLNGAI 205
>sp|Q89AA5|CYOC_BUCBP Cytochrome o ubiquinol oxidase subunit 3 OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=cyoC PE=3 SV=1
Length = 194
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 114/169 (67%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC+IF +LF++Y +L N A+GP+ IF+ + + T +LL SS SC + + + K
Sbjct: 24 MSDCIIFCTLFSVYFILVDNVAQGPSGHNIFQNNLIIIETFLLLFSSFSCNLVLFEMKNK 83
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ V WL IT LLG FV LEL EF LIN FGP RS FLSSFFVL+ HG+H+I G
Sbjct: 84 NLYMVFLWLGITFLLGLLFVFLELFEFFHLINLGFGPTRSGFLSSFFVLIATHGIHVISG 143
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
+IW+I +I + +N+ R++CL++FWHFLDI+W+ IF+F+YL G
Sbjct: 144 LIWIIVMIKYVYTFNITNLIYYRMLCLNLFWHFLDIVWVFIFSFVYLFG 192
>sp|Q8K995|CYOC_BUCAP Cytochrome o ubiquinol oxidase subunit 3 OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=cyoC PE=3 SV=1
Length = 189
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 116/171 (67%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC+IF+ LFA+YA++ N++ +IF L V L T+ILLLSSLS G IQ K
Sbjct: 19 MSDCIIFAVLFAVYAIISSNFSTNLINHKIFNLSYVFLETLILLLSSLSSGMLTIQKNKN 78
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ + F+L +T LG F+++E+NEF +LI N P + AF S FF +VG+HG+H+ FG
Sbjct: 79 NIKIIYFYLLLTFFLGLSFLLMEVNEFYKLILENCSPSQHAFFSIFFTIVGVHGIHVFFG 138
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+I++++++ Q+ + + RI+C S+FWHFLDIIWI +FTF+YL G +
Sbjct: 139 LIFILSILYQLFYLGITNTIRIRILCFSLFWHFLDIIWICVFTFVYLNGVI 189
>sp|E0TW65|QOX3_BACPZ Quinol oxidase subunit 3 OS=Bacillus subtilis subsp. spizizenii
(strain ATCC 23059 / NRRL B-14472 / W23) GN=qoxC PE=1
SV=1
Length = 204
Score = 132 bits (333), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 108/168 (64%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
++ ++FS+LFA + VL + A G ++F++ V + T +LL+SS +CG A+ + ++
Sbjct: 33 AEIVLFSTLFATFFVLQNRTAGGVLPDELFEVNLVMIMTFLLLISSFTCGIAVHEMRRGS 92
Query: 62 VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGI 121
+ GV+ W IT LLG FV E+NEF+ ++ SAF S FFVL+G HG H+ GI
Sbjct: 93 LKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGASLGTSAFWSGFFVLLGTHGTHVTIGI 152
Query: 122 IWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
W+I +++Q+KK L + +I S++WHFLD++WI IFT +YL+G
Sbjct: 153 FWIIGILIQLKKRGLTPQTSSKIFISSLYWHFLDVVWIFIFTGVYLMG 200
>sp|P34958|QOX3_BACSU Quinol oxidase subunit 3 OS=Bacillus subtilis (strain 168) GN=qoxC
PE=3 SV=1
Length = 204
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 107/168 (63%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
++ ++FS+LFA + VL + A G ++F++ V + T +LL+SS +CG A+ + ++
Sbjct: 33 AEIVLFSTLFATFFVLKNRTAGGVLPDELFEVNLVMIMTFLLLISSFTCGIAVHEMRRGS 92
Query: 62 VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGI 121
+ GV+ W IT LLG FV E+NEF+ ++ SAF S FFVL+G HG H+ GI
Sbjct: 93 LKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGAALSTSAFWSGFFVLLGTHGTHVTIGI 152
Query: 122 IWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
W+ +++Q+KK L + +I S++WHFLD++WI IFT +YL+G
Sbjct: 153 FWITGILIQLKKRGLTPQTSSKIFISSLYWHFLDVVWIFIFTGVYLMG 200
>sp|Q03439|COX3_BACP3 Cytochrome c oxidase subunit 3 OS=Bacillus PS3 GN=ctaE PE=1 SV=1
Length = 207
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 104/168 (61%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
+ ++F+SLFA Y L GP+A ++F++P V + T++LL SSL+ +AI +
Sbjct: 37 GETVLFASLFATYLALKDKTNGGPSAEELFQMPVVFMATMLLLTSSLTSVYAIYHMKNFD 96
Query: 62 VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGI 121
+ W IT LLG F+ LE+ EF E ++ SAF S+F+ LVG HG H+ FG+
Sbjct: 97 FKKMQLWFGITVLLGAGFLGLEIYEFNEYVHEGHKFTTSAFASAFYTLVGTHGSHVAFGL 156
Query: 122 IWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
+W++TL+++ K L L N + S++WHF+D++W+ IFT +YL+G
Sbjct: 157 LWILTLMIRNAKRGLNLYNAPKFYVASLYWHFIDVVWVFIFTVVYLMG 204
>sp|Q7A183|QOX3_STAAW Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
MW2) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q6GAF4|QOX3_STAAS Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
MSSA476) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q6GI25|QOX3_STAAR Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
MRSA252) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q7A6A0|QOX3_STAAN Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
N315) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q99V38|QOX3_STAAM Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q5HH25|QOX3_STAAC Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
COL) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q2YX16|QOX3_STAAB Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q2FZK1|QOX3_STAA8 Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
NCTC 8325) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q2FI19|QOX3_STAA3 Probable quinol oxidase subunit 3 OS=Staphylococcus aureus (strain
USA300) GN=qoxC PE=3 SV=1
Length = 201
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
++ +F +LFA L H +YA G ++F+LP V + T LL SS +CG AI ++
Sbjct: 28 AEFALFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQ 86
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
+ ++FW+ IT LLG FV E+ EF + P ++ SSFF+L+G HG H+
Sbjct: 87 EKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSL 146
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
GI+W I L++QI++ L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 147 GIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q4L563|QOX3_STAHJ Probable quinol oxidase subunit 3 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=qoxC PE=3 SV=1
Length = 201
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 6 IFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVN 63
+F +LFA L H +YA G ++F+LP V + T LL+SS +CG +I +K+ N
Sbjct: 32 LFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLISSYTCGISIYYMRKEKQN 90
Query: 64 GVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIW 123
++FW+ +T LLG FV E+ EF ++ P ++ SSFF+L+G HG H+ GI W
Sbjct: 91 LMMFWMILTVLLGLVFVGFEIYEFAHYVSEGVTPQIGSYWSSFFILLGTHGAHVSLGIGW 150
Query: 124 LITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
+I L++Q+ L N ++ +S++WHFLD++WI IFT +Y+IG
Sbjct: 151 IICLLIQVATRGLNKYNAPKLFIVSLYWHFLDVVWIFIFTAVYMIG 196
>sp|Q49WI2|QOX3_STAS1 Probable quinol oxidase subunit 3 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=qoxC PE=3 SV=1
Length = 201
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Query: 6 IFSSLFAIYAVLGH--NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVN 63
+F +LFA L H +YA G ++F+LP V + T LL+SS +CG AI +K+
Sbjct: 32 LFGTLFATLLTLQHGGDYA-GKMTTELFELPLVLIMTFALLISSYTCGIAIYYMRKEKEK 90
Query: 64 GVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIW 123
++ W+ IT LLG FV E+ EF ++ ++ SSFF+L+G HG H+ GI+W
Sbjct: 91 LMLIWMIITVLLGMVFVGFEIYEFAHYVHEGVNLTIGSYWSSFFILLGTHGAHVSLGIVW 150
Query: 124 LITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
+I L++Q+ L +N ++ +S++WHFLD++WI IFT +Y+IG
Sbjct: 151 IICLLIQVAMRGLNKDNAPKLFIVSLYWHFLDVVWIFIFTAVYMIG 196
>sp|Q8CPP8|QOX3_STAES Probable quinol oxidase subunit 3 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=qoxC PE=3 SV=1
Length = 201
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPT-AIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
++ +F +LFA L H G +F+L + + T LL+SS +CG AI +++
Sbjct: 28 AEFALFGTLFATLLTLQHGGGYGGKLTTDLFELHLILIMTFALLISSYTCGIAIYYMRQE 87
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
N ++FW+ IT +LG FV E+ EF + P +F SSFF+L+G HG H+ G
Sbjct: 88 KQNLMMFWMIITVILGLVFVGFEIYEFAHYASEGVNPTIGSFWSSFFILLGTHGAHVSLG 147
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
I+W+I L++QI L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 148 IVWVICLLIQIGTRGLDSYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q5HQB1|QOX3_STAEQ Probable quinol oxidase subunit 3 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=qoxC PE=3 SV=1
Length = 201
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPT-AIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
++ +F +LFA L H G +F+L + + T LL+SS +CG AI +++
Sbjct: 28 AEFALFGTLFATLLTLQHGGGYGGKLTTDLFELHLILIMTFALLISSYTCGIAIYYMRQE 87
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
N ++FW+ IT +LG FV E+ EF + P +F SSFF+L+G HG H+ G
Sbjct: 88 KQNLMMFWMIITVILGLVFVGFEIYEFAHYASEGVNPTIGSFWSSFFILLGTHGAHVSLG 147
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
I+W+I L++QI L N ++ +S++WHFLD++W+ IFT +Y+IG
Sbjct: 148 IVWVICLLIQIGTRGLDSYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIG 196
>sp|Q04442|COX3_BACPE Cytochrome c oxidase subunit 3 OS=Bacillus pseudofirmus (strain
OF4) GN=ctaE PE=3 SV=1
Length = 206
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
+ ++F++ F + L A+GPT+ + L V + T++LL SSL+ A+ +K
Sbjct: 35 GETILFATFFGTFLGLRGGTADGPTSADLVALDLVFIMTMLLLTSSLTSVLAMFAMKKNN 94
Query: 62 VNGVIFWLSITTLLGFFFVILELNEFIE-LINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
++ W+ IT +LG F+ E+ EF +++ FG SAF S+F+ LVG+HG H+ FG
Sbjct: 95 FKAMMIWMWITVVLGLAFLGFEIYEFHHYVVDYQFGFSTSAFASAFYSLVGLHGAHVAFG 154
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
+ W+I L+++ +K + L N + ++WHF+D++W+ IFT +YL+G
Sbjct: 155 LSWIIVLLIRYRKSGITLTNAPKFYVAGLYWHFIDVVWVFIFTVVYLMG 203
>sp|P24012|COX3_BACSU Cytochrome c oxidase subunit 3 OS=Bacillus subtilis (strain 168)
GN=ctaE PE=3 SV=2
Length = 207
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 1/169 (0%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
+ ++F+SLFA + L ++ A P ++F + V + T++LL SSL+ +A+ +
Sbjct: 36 GETVLFASLFATFLALRNSNAGDPPTTEMFDVTLVFIATMLLLTSSLTSVYAMYHMKNFS 95
Query: 62 VNGVIFWLSITTLLGFFFVILELNEFIELINR-NFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ WL IT LLG F+ LE+ EF + F SA S+F+ LVG HG H+ FG
Sbjct: 96 FGKMQLWLGITILLGAGFLGLEIYEFKHYTHEFGFTITSSALGSAFYTLVGTHGAHVAFG 155
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
++W+ TL+++ K L L + S++WHF+D++W+ IFT +YL+G
Sbjct: 156 LMWISTLMIRNAKRGLNLYTAPKFYVASLYWHFIDVVWVFIFTVVYLMG 204
>sp|Q9AEL8|COX3_CORGL Cytochrome c oxidase subunit 3 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=ctaE PE=1 SV=1
Length = 205
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGHN-YAEGPTAIQIFKL--PSVALNTIILLLSSLSCGFAIIQAQ 58
+ + F+ LFA+Y V N A G Q L P L T+IL+ SS++C F + A+
Sbjct: 35 QELMFFAGLFAMYFVSRANGLANGSWGEQTDHLNVPYALLITVILVSSSVTCQFGVFAAE 94
Query: 59 KKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHII 118
+ V G+ W +T +LG FVI + E+I L+ S + S+FF+ G H LH+I
Sbjct: 95 RGDVYGLRKWFLVTIILGSIFVIGQGYEYITLVGHGLTIQSSVYGSAFFITTGFHALHVI 154
Query: 119 FGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
G++ + ++++I K + +S +WHF+D++WIG+F IY I
Sbjct: 155 AGVMAFVVVLMRIHKSKFTPAQATAAMVVSYYWHFVDVVWIGLFITIYFI 204
>sp|P63856|COX3_MYCTU Probable cytochrome c oxidase subunit 3 OS=Mycobacterium
tuberculosis GN=ctaE PE=3 SV=1
Length = 203
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 2 SDCLIFSSLFAIY----AVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQA 57
S+ + F+ LFA Y A G N+ PT + +++ V T++L+ SS +C + A
Sbjct: 35 SELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPV---TLVLIASSFTCQMGVFAA 91
Query: 58 QKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHI 117
++ + G+ W IT L+G FFV+ + E+ L++ SA+ S F++ G HGLH+
Sbjct: 92 ERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLATGFHGLHV 151
Query: 118 IFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
G+I I L+++ I +S +WHF+DI+WI +FT IY I
Sbjct: 152 TGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFI 202
>sp|P63857|COX3_MYCBO Probable cytochrome c oxidase subunit 3 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ctaE PE=3 SV=1
Length = 203
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 2 SDCLIFSSLFAIY----AVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQA 57
S+ + F+ LFA Y A G N+ PT + +++ V T++L+ SS +C + A
Sbjct: 35 SELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPV---TLVLIASSFTCQMGVFAA 91
Query: 58 QKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHI 117
++ + G+ W IT L+G FFV+ + E+ L++ SA+ S F++ G HGLH+
Sbjct: 92 ERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLATGFHGLHV 151
Query: 118 IFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
G+I I L+++ I +S +WHF+DI+WI +FT IY I
Sbjct: 152 TGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFI 202
>sp|Q8FNQ9|COX3_COREF Cytochrome c oxidase subunit 3 OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=ctaE PE=3 SV=2
Length = 205
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
Query: 2 SDCLIFSSLFAIYAVLGHN-YAEGPTAIQI--FKLPSVALNTIILLLSSLSCGFAIIQAQ 58
+ + F+ LFA+Y V N A G A Q +P T+IL+ SS++C F + A+
Sbjct: 35 QELMFFAGLFAMYFVSRANGLANGSWAEQTDYLNVPYALAITVILVSSSVTCQFGVFAAE 94
Query: 59 KKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHII 118
+ V G+ W IT +LG FVI + E+ L+ S + S+F++ G H H+I
Sbjct: 95 RGDVYGLRKWFLITIILGSIFVIGQAYEYFTLVGHGLSIQSSVYGSAFYITTGFHAAHVI 154
Query: 119 FGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
G+I + ++++I+K + +S +WHF+D++WIG+F IY I
Sbjct: 155 AGVIAFVVVLMRIQKAKFTPAQATAAMVVSYYWHFVDVVWIGLFITIYFI 204
>sp|Q5YZ19|COX3_NOCFA Probable cytochrome c oxidase subunit 3 OS=Nocardia farcinica
(strain IFM 10152) GN=ctaE PE=3 SV=1
Length = 203
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 9/172 (5%)
Query: 2 SDCLIFSSLFAIY----AVLGHNYAEGPTAIQI-FKLPSVALNTIILLLSSLSCGFAIIQ 56
S+ + F+ LFA+Y A N+ PT + + +P A +L+ SS +C +
Sbjct: 35 SELMFFAGLFAMYFVARAQANGNWPPEPTELNLKLAVPVTA----VLVASSFTCQMGVFA 90
Query: 57 AQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLH 116
A+K V G+ W IT L+G FFV + E+ L++ SA+ S F++ G HGLH
Sbjct: 91 AEKGDVFGLRRWYFITLLMGAFFVAGQGYEYYHLVHEGTSISSSAYGSVFYITTGFHGLH 150
Query: 117 IIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
+I G+I + L+++ K I +S +WHF+DI+WIG+F IY +
Sbjct: 151 VIGGLIAFVFLLIRTKVSKFTPAQATAAIVVSYYWHFVDIVWIGLFATIYFV 202
>sp|Q9X809|COX3_STRCO Probable cytochrome c oxidase subunit 3 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=ctaE PE=3 SV=1
Length = 206
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 10/174 (5%)
Query: 2 SDCLIFSSLFAIY----AVLGHNY-AEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQ 56
S+ + F++LFA+Y +V G ++ +E A+ I P A NT IL+LSSL+C +
Sbjct: 35 SELMFFAALFAMYFTLRSVTGPDFWSEKADALNI---PFSATNTTILVLSSLTCQLGVFA 91
Query: 57 AQKKYVNGVIFWLSITTLLGFFFVILELNEFIELI-NRNFGPWRSAFLSSFFVLVGMHGL 115
A++ V + W +T ++G F+ ++ E+ EL+ + + S+F++ G HGL
Sbjct: 92 AERGDVKKLRMWFIVTFVMGAIFIGGQVFEYTELVKHEGISLSSDPYGSAFYLTTGFHGL 151
Query: 116 HIIFGII-WLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
H+ G+I +L+ L E I +S +WHF+D++WIG+F IYLI
Sbjct: 152 HVTGGLIAFLLVLGRTYAARRFTHEQATAAIVVSYYWHFVDVVWIGLFATIYLI 205
>sp|Q73YM3|COX3_MYCPA Probable cytochrome c oxidase subunit 3 OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=ctaE
PE=3 SV=1
Length = 203
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 7/171 (4%)
Query: 2 SDCLIFSSLFAIY----AVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQA 57
S+ + F+ LFA+Y A G + PT + +++ V T++L+ SS +C + A
Sbjct: 35 SELMFFAGLFAMYFTARAQSGGKWPPPPTELNLYQAVPV---TLVLIASSFTCQMGVFAA 91
Query: 58 QKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHI 117
++ V G+ W IT L+G FFV+ + E+ L+ SA+ S F++ G H LH+
Sbjct: 92 ERGDVFGLRRWYVITFLMGLFFVLGQGYEYYHLMGHGTTIPGSAYGSVFYLATGFHDLHV 151
Query: 118 IFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
G++ I L+ + I +S +WHF+DI+WI +FT IY I
Sbjct: 152 TGGLVAFIFLLARTAMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFI 202
>sp|Q6NGA0|COX3_CORDI Cytochrome c oxidase subunit 3 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=ctaE PE=3 SV=1
Length = 205
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 9/172 (5%)
Query: 3 DCLIFSSLFAIY------AVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQ 56
+ + F+ LFA+Y + ++ EG + + P + TIIL+ SS++ F +
Sbjct: 36 ELMFFAGLFAMYFTSRANGIGNGSWKEGAHHLNV---PYALVITIILISSSVTAQFGVFA 92
Query: 57 AQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLH 116
A++ V GV W S+T LLG F++ + E+ L+ S + SSFF+ G H H
Sbjct: 93 AERGDVFGVRRWFSLTILLGAIFLVGQAYEYFHLVEHGMTIQSSVYGSSFFITTGFHAAH 152
Query: 117 IIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
++ G + + ++L++ K + +S +WHF+D++WIG+F IY I
Sbjct: 153 VLAGALAFVVVLLRLSKSKFTPAQATAAMVVSYYWHFVDVVWIGLFITIYFI 204
>sp|O69582|COX3_MYCLE Probable cytochrome c oxidase subunit 3 OS=Mycobacterium leprae
(strain TN) GN=ctaE PE=3 SV=1
Length = 202
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 2/168 (1%)
Query: 2 SDCLIFSSLFAIY-AVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
S+ + F+ LFA+Y + P + ++ +V + T++L+ SS +C + A++
Sbjct: 35 SELMFFAGLFAMYFTARAQAGGKWPPSTELNLYQAVPV-TLVLIASSFTCQMGVFSAERG 93
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
V G+ W IT L+G FFV+ + E+ LI SA+ S F++ G HGLH+ G
Sbjct: 94 DVFGLRRWYVITLLMGLFFVLGQGYEYYHLITHGTTIPSSAYGSVFYLATGFHGLHVTGG 153
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
+I I L+ + I +S +WHF+DI+WI +FT IY I
Sbjct: 154 LIAFIFLLARTTMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFI 201
>sp|Q82AK5|COX3_STRAW Probable cytochrome c oxidase subunit 3 OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=ctaE PE=3 SV=1
Length = 206
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEGPTA----IQIFKLPSVALNTIILLLSSLSCGFAIIQA 57
S+ + F++LFA+Y L GP P A NT IL+LSSL+C + A
Sbjct: 35 SELMFFAALFAMYFTL--RSVTGPEHWKEMASHLNFPFSATNTTILVLSSLTCQLGVFAA 92
Query: 58 QKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN-FGPWRSAFLSSFFVLVGMHGLH 116
++ V + W +T ++G F+ ++ E+ EL+ ++ + S F++ G HGLH
Sbjct: 93 ERGDVKKLRMWFIVTFIMGAIFIGGQVFEYTELVKKDGLSLSSDPYGSVFYLTTGFHGLH 152
Query: 117 IIFGII-WLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
+ G+I +L+ L E I +S +WHF+D++WIG+F IY+I
Sbjct: 153 VTGGLIAFLLVLGRTYAARRFTHEQATAAIVVSYYWHFVDVVWIGLFATIYMI 205
>sp|P50677|COX3_THEVL Cytochrome c oxidase subunit 3 OS=Thermosynechococcus vulcanus
GN=ctaE PE=3 SV=1
Length = 201
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 99/174 (56%), Gaps = 14/174 (8%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGP---TAIQIFKLPSVALNTIILLLSSLSCGFAIIQA 57
+S+ L+F LFA Y +L + + P T +++F +P++ NT+IL+ SS + +
Sbjct: 33 ISESLMFGGLFAAYLLLRGMHEQWPPEGTEVELF-VPTI--NTLILISSSFVIHYGDVAI 89
Query: 58 QKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHI 117
+K V G+ W IT +G F+ ++ E++ L +G + F + F+V+ G HGLH+
Sbjct: 90 KKDDVRGMRKWYWITAAMGAVFLGGQVYEYLTL---GYGLRTNVFANCFYVMTGFHGLHV 146
Query: 118 IFGIIWLITLILQIKK---YNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
GI+ ++ +I + ++ YN + + ++WHF+D+IWI +FT +Y++
Sbjct: 147 FIGILLILGVIWRSRRPGHYN--AQKHTGVAMAEIYWHFVDVIWIILFTLLYIL 198
>sp|Q92J29|COX3_RICCN Probable cytochrome c oxidase subunit 3 OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=ctaE PE=3 SV=2
Length = 283
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 25 PTAIQIFKLPSVA-LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
P I+ F+ + +NT+ILLLS + +A ++K + L++T LLG FF ++
Sbjct: 138 PPTIKTFEPFDIPFINTLILLLSGTTVTWAHYALEEKNQKDCVTALALTILLGIFFTTMQ 197
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
E+ + F + S+F++ G HG H+I G I+LI + K+ + E
Sbjct: 198 AYEYY---HAAFKFTDGIYASNFYLATGFHGAHVIIGTIFLIICYFRAKRGDFTTEGNGH 254
Query: 144 I--ICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ C + +WHF+D++W+ +FTF+Y+ G+
Sbjct: 255 LGFECAAWYWHFVDVVWLFLFTFVYIFGS 283
>sp|O03170|COX3_LATCH Cytochrome c oxidase subunit 3 OS=Latimeria chalumnae GN=MT-CO3
PE=3 SV=1
Length = 261
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A +++ Q+K +F IT LLG +F
Sbjct: 120 GITPLDPFEVP--LLNTAVLLASGITVTWAHHSLMEGQRKEAIQSLF---ITVLLGLYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F A+ S+FFV G HGLH+I G +LI +++ +Y+ +
Sbjct: 175 ALQATEYYE---SPFTIADGAYGSTFFVATGFHGLHVIIGSTFLIVCLVRQTQYHFTSNH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|Q4UKK0|COX3_RICFE Probable cytochrome c oxidase subunit 3 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ctaE PE=3 SV=1
Length = 278
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 25 PTAIQIFKLPSVA-LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
P I+ F + +NT+ILLLS + +A ++K + L++T LLG FF ++
Sbjct: 133 PPTIKTFDPFDIPFINTLILLLSGTTVTWAHYALEEKNQKDCVTALALTILLGIFFTTMQ 192
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
E+ + F + S+F++ G HG H+I G I+LI + K+ + E
Sbjct: 193 AYEYY---HAAFKFTDGIYASNFYLATGFHGAHVIIGTIFLIVCYFRAKRGDFTTEGNGH 249
Query: 144 I--ICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ + +WHF+D++W+ +FTF+Y+ G+
Sbjct: 250 LGFEFAAWYWHFVDVVWLFLFTFVYIFGS 278
>sp|Q96133|COX3_CARAU Cytochrome c oxidase subunit 3 OS=Carassius auratus GN=mt-co3 PE=2
SV=2
Length = 261
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I++ ++K I L++T LLGF+F
Sbjct: 120 GITPLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQA---IQSLALTILLGFYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F + S+FFV G HGLH+I G +L +L+ +Y+ E+
Sbjct: 175 ALQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|Q35539|COX3_PETMA Cytochrome c oxidase subunit 3 OS=Petromyzon marinus GN=MT-CO3 PE=3
SV=1
Length = 261
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 25 PTAIQI---FKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVI 81
PT I F++P LNT +LL S +S +A +K L++T LLG +F
Sbjct: 118 PTGINPLNPFEVP--LLNTAVLLASGVSVTWAHHSITEKNRTETTQALTLTVLLGLYFTA 175
Query: 82 LELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQ 141
L++ E+ E F + S+FFV G HGLH+I G ++L+T +L+ +Y+ ++
Sbjct: 176 LQIMEYYE---TPFTMADGVYGSTFFVATGFHGLHVIIGSLFLLTCLLRHLQYHFTSKHH 232
Query: 142 RRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 233 FGFEAAAWYWHFVDVVWLFLYISIYWWGS 261
>sp|P48172|COX3_ONCMY Cytochrome c oxidase subunit 3 OS=Oncorhynchus mykiss GN=mt-co3
PE=3 SV=1
Length = 261
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I++ ++K I L++T LLGF+F
Sbjct: 120 GITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQT---IQALTLTILLGFYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F + S+FFV G HGLH+I G +L +L+ +Y+ E+
Sbjct: 175 FLQGMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|P69218|COX3_ONCNE Cytochrome c oxidase subunit 3 OS=Oncorhynchus nerka GN=mt-co3 PE=3
SV=1
Length = 261
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I++ ++K I L++T LLGF+F
Sbjct: 120 GITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQT---IQALTLTILLGFYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F + S+FFV G HGLH+I G +L +L+ +Y+ E+
Sbjct: 175 FLQGMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|P69217|COX3_ONCMA Cytochrome c oxidase subunit 3 OS=Oncorhynchus masou GN=mt-co3 PE=3
SV=1
Length = 261
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I++ ++K I L++T LLGF+F
Sbjct: 120 GITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQT---IQALTLTILLGFYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F + S+FFV G HGLH+I G +L +L+ +Y+ E+
Sbjct: 175 FLQGMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|P20684|COX3_ONCCL Cytochrome c oxidase subunit 3 OS=Oncorhynchus clarkii GN=mt-co3
PE=3 SV=1
Length = 261
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I++ ++K I L++T LLGF+F
Sbjct: 120 GITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQT---IQALTLTILLGFYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F + S+FFV G HGLH+I G +L +L+ +Y+ E+
Sbjct: 175 FLQGMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQVQYHFTSEH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|Q9ZDX3|COX3_RICPR Probable cytochrome c oxidase subunit 3 OS=Rickettsia prowazekii
(strain Madrid E) GN=ctaE PE=3 SV=1
Length = 278
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 25 PTAIQIFKLPSVA-LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
P I+ F + +NT+ILLLS + A ++K + L+ T +LG FF +++
Sbjct: 133 PPTIKTFDPFDIPFINTLILLLSGTTITGAHYALEEKNQKDCVTALAFTIVLGIFFTLMQ 192
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
+ E+ + F + S+F++ G HG H++ G I+LI + K+ + E
Sbjct: 193 VYEYY---HAEFKFTDGIYASNFYLATGFHGAHVVIGTIFLIVCYFRAKRGDFTTEGNGH 249
Query: 144 I--ICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ + +WHF+D++W+ +FTF+Y++G+
Sbjct: 250 LGFEFAAWYWHFVDVVWLFLFTFVYILGS 278
>sp|P05505|COX3_RAT Cytochrome c oxidase subunit 3 OS=Rattus norvegicus GN=Mtco3 PE=1
SV=5
Length = 261
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 11/166 (6%)
Query: 8 SSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNG 64
SSL + + G G T + ++P LNT +LL S +S +A +++ + ++N
Sbjct: 104 SSLVPTHDLGGCWPPTGITPLNPLEVP--LLNTSVLLASGVSITWAHHSLMEGNRNHMNQ 161
Query: 65 VIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWL 124
+ IT LLG +F IL+ +E+ E +F + S+FF+ G HGLH+I G +L
Sbjct: 162 ALL---ITILLGLYFTILQASEYFE---TSFSISDGIYGSTFFMATGFHGLHVIIGSTFL 215
Query: 125 ITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
I +L+ K++ ++ + +WHF+D++W+ ++ IY G+
Sbjct: 216 IVCLLRQLKFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>sp|Q1RHH9|COX3_RICBR Probable cytochrome c oxidase subunit 3 OS=Rickettsia bellii
(strain RML369-C) GN=ctaE PE=3 SV=1
Length = 277
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 25 PTAIQIFKLPSVA-LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
P I++F + +NT+ILLLS + +A +++ + L +T +LG FF ++
Sbjct: 132 PPNIKVFDPFDIPFINTLILLLSGTTVTWAHYALEERNQKDCVTALGLTIILGIFFTCMQ 191
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
E+ + F + S+F++ G HG H+I G I+LI + ++ + ++N
Sbjct: 192 AYEYY---HAAFKFTDGIYPSNFYLATGFHGAHVIIGTIFLIVCCFRARRGDFAIKNNGH 248
Query: 144 I--ICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ + +WHF+D++W+ +FTF+Y+ G+
Sbjct: 249 LGFEFAAWYWHFVDVVWLFLFTFVYIFGS 277
>sp|P18945|COX3_CHICK Cytochrome c oxidase subunit 3 OS=Gallus gallus GN=MT-CO3 PE=2 SV=1
Length = 261
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 25 PTAIQIFKLPSVAL-NTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
PT ++ V L NT ILL S ++ +A + I L++T LLGF+F L+
Sbjct: 118 PTGVKPLNPLEVPLLNTAILLASGVTVTWAHHSITEGNRKQAIHALTLTILLGFYFTALQ 177
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
E+ E +F S + S+FFV G HGLH+I G +L +L++ K++ +
Sbjct: 178 AMEYHE---ASFSIADSVYGSTFFVATGFHGLHVIIGSSFLTVCLLRLIKFHFTPNHHFG 234
Query: 144 IICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+DIIW+ ++ +Y G+
Sbjct: 235 FEAAAWYWHFVDIIWLFLYMSMYWWGS 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.149 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,213,093
Number of Sequences: 539616
Number of extensions: 2093441
Number of successful extensions: 8127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7777
Number of HSP's gapped (non-prelim): 230
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.6 bits)