Query psy2389
Match_columns 172
No_of_seqs 105 out of 1038
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:44:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1845 CyoC Heme/copper-type 100.0 6E-49 1.3E-53 304.2 21.8 168 1-170 40-208 (209)
2 TIGR02842 CyoC cytochrome o ub 100.0 4.1E-48 9E-53 295.9 22.7 171 1-171 10-180 (180)
3 cd02863 Ubiquinol_oxidase_III 100.0 1.8E-47 3.9E-52 293.7 22.2 169 1-169 18-186 (186)
4 PRK10663 cytochrome o ubiquino 100.0 7.2E-47 1.6E-51 293.9 22.6 171 1-171 34-204 (204)
5 TIGR02897 QoxC cytochrome aa3 100.0 1.5E-46 3.1E-51 289.5 22.5 171 1-171 19-190 (190)
6 cd02862 NorE_like NorE_like su 100.0 4.7E-46 1E-50 286.0 22.4 168 1-168 18-186 (186)
7 cd02865 Heme_Cu_Oxidase_III_2 100.0 1.4E-45 3E-50 283.0 22.2 167 1-168 18-184 (184)
8 PLN02194 cytochrome-c oxidase 100.0 2.9E-44 6.2E-49 288.3 21.9 168 1-171 91-265 (265)
9 cd01665 Cyt_c_Oxidase_III Cyto 100.0 5.3E-44 1.2E-48 284.4 21.2 165 1-168 72-243 (243)
10 MTH00189 COX3 cytochrome c oxi 100.0 7.1E-44 1.5E-48 285.8 21.7 167 1-170 87-260 (260)
11 MTH00219 COX3 cytochrome c oxi 100.0 1.1E-43 2.4E-48 284.8 22.2 167 1-170 89-262 (262)
12 MTH00024 COX3 cytochrome c oxi 100.0 1.4E-43 2.9E-48 284.3 22.0 167 1-170 88-261 (261)
13 MTH00009 COX3 cytochrome c oxi 100.0 1.7E-43 3.8E-48 283.4 21.7 167 1-170 86-259 (259)
14 MTH00052 COX3 cytochrome c oxi 100.0 2.1E-43 4.5E-48 283.6 22.1 167 1-170 89-262 (262)
15 MTH00039 COX3 cytochrome c oxi 100.0 2E-43 4.4E-48 283.0 21.9 167 1-170 87-260 (260)
16 MTH00130 COX3 cytochrome c oxi 100.0 2.2E-43 4.8E-48 282.9 21.8 167 1-170 88-261 (261)
17 PF00510 COX3: Cytochrome c ox 100.0 3E-43 6.5E-48 282.8 21.8 167 1-170 85-258 (258)
18 MTH00075 COX3 cytochrome c oxi 100.0 4.7E-43 1E-47 281.2 21.8 166 1-169 88-260 (261)
19 MTH00141 COX3 cytochrome c oxi 100.0 5.1E-43 1.1E-47 281.3 21.6 167 1-170 86-259 (259)
20 MTH00099 COX3 cytochrome c oxi 100.0 6.5E-43 1.4E-47 280.5 22.0 167 1-170 88-261 (261)
21 MTH00083 COX3 cytochrome c oxi 100.0 7.5E-43 1.6E-47 279.3 21.7 166 1-170 84-256 (256)
22 MTH00118 COX3 cytochrome c oxi 100.0 8.2E-43 1.8E-47 279.8 21.9 167 1-170 88-261 (261)
23 cd00386 Heme_Cu_Oxidase_III_li 100.0 1.4E-42 3E-47 266.0 21.5 165 1-168 18-183 (183)
24 MTH00155 COX3 cytochrome c oxi 100.0 1.3E-42 2.9E-47 278.0 21.0 163 1-166 86-255 (255)
25 cd02864 Heme_Cu_Oxidase_III_1 100.0 4.2E-42 9.2E-47 267.1 22.0 168 1-168 18-202 (202)
26 MTH00028 COX3 cytochrome c oxi 100.0 1.2E-41 2.5E-46 275.4 21.7 167 1-170 88-297 (297)
27 MTH00049 COX3 cytochrome c oxi 100.0 1.3E-37 2.9E-42 243.5 19.3 153 1-167 62-214 (215)
28 KOG4664|consensus 100.0 2E-36 4.3E-41 232.8 3.4 167 1-170 88-261 (261)
29 PF04238 DUF420: Protein of un 98.5 1.5E-05 3.3E-10 58.0 16.0 128 35-166 4-133 (133)
30 COG2322 Predicted membrane pro 98.5 3.1E-05 6.7E-10 57.8 16.0 129 35-167 45-175 (177)
31 PF11694 DUF3290: Protein of u 69.6 33 0.00071 25.4 7.1 41 50-90 31-71 (149)
32 PRK13707 conjugal transfer pil 47.5 78 0.0017 21.8 5.5 51 101-153 29-79 (101)
33 COG3302 DmsC DMSO reductase an 38.2 1E+02 0.0022 25.3 5.6 48 62-112 107-154 (281)
34 PF07086 DUF1352: Protein of u 32.2 2.4E+02 0.0051 21.7 6.9 41 46-86 81-121 (186)
35 smart00786 SHR3_chaperone ER m 31.5 96 0.0021 24.1 4.3 55 71-128 16-78 (196)
36 PF10067 DUF2306: Predicted me 31.5 1.7E+02 0.0037 19.9 7.2 38 48-85 54-91 (103)
37 PF15048 OSTbeta: Organic solu 30.8 96 0.0021 22.3 3.9 37 107-143 37-73 (125)
38 KOG4332|consensus 29.6 3.5E+02 0.0076 22.9 9.1 29 103-131 342-370 (454)
39 COG1271 CydA Cytochrome bd-typ 28.9 3E+02 0.0064 24.4 7.3 33 53-85 206-238 (457)
40 PF07178 TraL: TraL protein; 25.7 2.1E+02 0.0046 19.1 5.6 52 100-153 22-73 (95)
41 COG1969 HyaC Ni,Fe-hydrogenase 25.0 1.7E+02 0.0037 23.0 4.6 37 96-132 45-81 (227)
42 PF03609 EII-Sor: PTS system s 24.3 3.6E+02 0.0079 21.4 7.1 35 38-72 109-143 (238)
43 PRK11380 hypothetical protein; 22.8 4.8E+02 0.01 22.2 9.6 57 64-133 39-95 (353)
44 COG3715 ManY Phosphotransferas 21.7 4.5E+02 0.0098 21.5 6.9 40 38-77 109-148 (265)
45 PF08229 SHR3_chaperone: ER me 21.2 4E+02 0.0086 20.7 6.0 59 70-132 15-81 (196)
46 PF14325 DUF4383: Domain of un 20.6 1.1E+02 0.0024 21.8 2.7 51 71-125 4-63 (125)
No 1
>COG1845 CyoC Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]
Probab=100.00 E-value=6e-49 Score=304.23 Aligned_cols=168 Identities=44% Similarity=0.798 Sum_probs=159.7
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTA-IQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF 79 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~-~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F 79 (172)
+||+++|++++.+|+++|.++++||++ .+..+++.+.+||.+|++||.++..|+.+.||||+|+.+.++.+|+++|++|
T Consensus 40 ~SE~~~Fa~lfaay~~~~~~~~~wp~~~~~~~~~~l~~inT~iLl~SS~t~~~A~~a~~~~~~~~~~~wL~~T~lLG~~F 119 (209)
T COG1845 40 MSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSSSFTCGLAVHALRRGNRKGARAWLLLTLLLGAAF 119 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998889877 4677888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389 80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI 159 (172)
Q Consensus 80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl 159 (172)
+++|++||.++.+ .+|++|+|+|.||++||+|++||..|++++.++.+|..+++.+++++.++|++++||||||+||+
T Consensus 120 v~~q~yE~~hl~~--~~~~~~~f~S~Ff~ltG~HGlHV~~Gli~l~~~~~r~~~~g~~~~~~~~v~~~s~YWHFvDvVWi 197 (209)
T COG1845 120 VGGQLYEYYHLIA--FGLTASAFGSAFFLLTGFHGLHVTFGLIWLLVLLWRIARRGLTTRNHTGVEAASLYWHFVDVVWI 197 (209)
T ss_pred HHHHHHHHHHHHh--cCcCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence 9999999999876 89999999999999999999999999999999999988877788899999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy2389 160 GIFTFIYLIGT 170 (172)
Q Consensus 160 ~~~~~~yl~~~ 170 (172)
++|.++|++|.
T Consensus 198 ~lF~~vYl~g~ 208 (209)
T COG1845 198 FLFTLVYLWGA 208 (209)
T ss_pred HHHHHHHHHhc
Confidence 99999999984
No 2
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=100.00 E-value=4.1e-48 Score=295.94 Aligned_cols=171 Identities=56% Similarity=1.026 Sum_probs=162.5
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
+||+++|++++++|+++|.+.|++|++.++++++.+.+||++|++||.+++.|+++.|++++++.+.++..|+++|.+|+
T Consensus 10 ~se~~~F~~l~~ay~~~~~~~~~~~~~~~~~~l~~~~~nT~vLl~Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~lG~~Fl 89 (180)
T TIGR02842 10 MSDCILFATLFATYAVLSNNTAGGPSGKEIFDLPFVLVETFLLLLSSITFGFAMLAMNKKNKKMVILWLAITFLLGLGFI 89 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988777766666778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
+.|..||.++.++|+++++|+|+|.||++||+|++||++|++++.++..|.++++.+++++.++|++++||||||++|++
T Consensus 90 ~~Q~~E~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHVi~Gli~l~~~~~~~~~~~~~~~~~~~~e~~~~YWHFvD~vWl~ 169 (180)
T TIGR02842 90 GMEIYEFYHLIAEGNGPDRSAFLSAFFTLVGTHGLHVTSGLIWIIVMIIQVYKYGLTKINRRRLACLSLFWHFLDIVWIC 169 (180)
T ss_pred HHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q psy2389 161 IFTFIYLIGTL 171 (172)
Q Consensus 161 ~~~~~yl~~~~ 171 (172)
+|+++|++|++
T Consensus 170 lf~~lYl~~~~ 180 (180)
T TIGR02842 170 VFTFVYLLGVL 180 (180)
T ss_pred HHHHHHHHhcC
Confidence 99999999853
No 3
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=100.00 E-value=1.8e-47 Score=293.73 Aligned_cols=169 Identities=54% Similarity=1.023 Sum_probs=161.4
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
+||+++|++++++|+++|.++|++|++.++++++.+.+||++|++||.+++.|+++.|++++++.+.++..|+++|.+|+
T Consensus 18 ~sE~~~F~~l~~ay~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~~~~a~~a~~~~~~~~~~~~L~~t~~lG~~Fl 97 (186)
T cd02863 18 MSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCGLAMIAMNKNNKKKVILWLIITFLLGLGFV 97 (186)
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999987777777766778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
+.|..||.++.++|+++++|+|+|.||++||+|++||++|++++.+++.|.++++.+++++.++|++++||||||++|++
T Consensus 98 ~~q~~E~~~l~~~g~~~~~~~~~s~fy~ltg~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvD~vWl~ 177 (186)
T cd02863 98 GMEIYEFHHLIAEGAGPDRSAFLSAFFTLVGTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIF 177 (186)
T ss_pred HHHHHHHHHHHhCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy2389 161 IFTFIYLIG 169 (172)
Q Consensus 161 ~~~~~yl~~ 169 (172)
+|+++|+++
T Consensus 178 lf~~lYl~~ 186 (186)
T cd02863 178 VFTVVYLLG 186 (186)
T ss_pred HHHHHHhcC
Confidence 999999875
No 4
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=100.00 E-value=7.2e-47 Score=293.93 Aligned_cols=171 Identities=50% Similarity=0.922 Sum_probs=162.0
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
+||+++|++++++|.++|..++++|++.+.++++.+.+||++|++||+++++|+++.|++++++.+.+|..|+++|.+|+
T Consensus 34 ~sE~~~F~~lf~ay~~~~~~~~~~p~~~~~~~lp~~~~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl 113 (204)
T PRK10663 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTFLFGAGFI 113 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999886676777766677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
++|..||.++.++|+++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||||++|++
T Consensus 114 ~~Q~~Ey~~l~~~g~~~~~~~~~S~fy~lTGlHglHVi~Gli~L~~~~~~~~~~~~~~~~~~~~~~~a~YWHFVD~vWl~ 193 (204)
T PRK10663 114 GMEIYEFHHLIVEGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVVWIC 193 (204)
T ss_pred HHHHHHHHHHHhcCcCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q psy2389 161 IFTFIYLIGTL 171 (172)
Q Consensus 161 ~~~~~yl~~~~ 171 (172)
+|+++|++|.+
T Consensus 194 lf~~lYl~~~~ 204 (204)
T PRK10663 194 VFTVVYLMGAM 204 (204)
T ss_pred HHHHHHHHhcC
Confidence 99999998853
No 5
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=100.00 E-value=1.5e-46 Score=289.55 Aligned_cols=171 Identities=40% Similarity=0.779 Sum_probs=159.7
Q ss_pred ChHHHHHHHHHHHHHHHhccCC-CCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYA-EGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF 79 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~-~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F 79 (172)
+||+++|++++++|+++|...+ +++++.++++++.+.+||.+|++||.+++.|+++.|++++++.+.++..|+++|.+|
T Consensus 19 ~sE~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~l~~~~lnT~vLl~SS~~~~~A~~a~~~~~~~~~~~~L~~tl~lG~~F 98 (190)
T TIGR02897 19 GAEIALFATLFATYLVLQHGGDYAGKMPAELFELPLVLIMTFLLLFSSFTCGIAIYEMRKENQKLMMFWMIITLLLGAGF 98 (190)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998643 344444567778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389 80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI 159 (172)
Q Consensus 80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl 159 (172)
+..|..||.++.++|+++++|+|+|+||++||+|++||++|++++.++..|.++++.+++++.++|.+++||||||++|+
T Consensus 99 l~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTG~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~e~~~~YWHFvDivWi 178 (190)
T TIGR02897 99 VGFEIYEFAHYASEGVTPQIGSYWSSFFVLLGTHGCHVTLGIVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWV 178 (190)
T ss_pred HHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q psy2389 160 GIFTFIYLIGTL 171 (172)
Q Consensus 160 ~~~~~~yl~~~~ 171 (172)
++|+++|++|.+
T Consensus 179 ~lf~~lYl~~~~ 190 (190)
T TIGR02897 179 FIFTAVYLIGMV 190 (190)
T ss_pred HHHHHHHHHhcC
Confidence 999999999853
No 6
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=100.00 E-value=4.7e-46 Score=286.00 Aligned_cols=168 Identities=28% Similarity=0.550 Sum_probs=159.8
Q ss_pred ChHHHHHHHHHHHHHHHhccCCC-CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAE-GPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF 79 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~-~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F 79 (172)
+||+++|++++++|+++|..+|+ ||++.++++++.+.+||.+|++||.++..|+++.|++++++.+.++..|+++|.+|
T Consensus 18 ~se~~~F~~l~~~y~~~~~~~~~~~p~~~~~~~~~~~~lnT~iLl~Ss~~~~~a~~a~~~~~~~~~~~~L~~t~~lg~~F 97 (186)
T cd02862 18 LSELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVRAARAGRRRRARRWLAAAVLLGLVF 97 (186)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCCCccCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988776 56666667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389 80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI 159 (172)
Q Consensus 80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl 159 (172)
+++|.+||.++.++|++|++|+|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||||++|+
T Consensus 98 l~~q~~E~~~l~~~g~~~~~~~~~s~f~~ltglH~~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvd~vWl 177 (186)
T cd02862 98 LVIKYFEYAHKIAAGIDPDAGLFFTLYFLLTGFHLLHVLIGLGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWI 177 (186)
T ss_pred HHHHHHHHHHHHhCCCCcCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2389 160 GIFTFIYLI 168 (172)
Q Consensus 160 ~~~~~~yl~ 168 (172)
++|.++|+.
T Consensus 178 ~lf~~lYl~ 186 (186)
T cd02862 178 VLFPLLYLV 186 (186)
T ss_pred HHHHHHHHC
Confidence 999999974
No 7
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00 E-value=1.4e-45 Score=282.99 Aligned_cols=167 Identities=22% Similarity=0.350 Sum_probs=158.5
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
+||+++|++++++|+++|.++|++| +.+.++++.+.+||++|++||.++..|+++.|++++++.+.++..|+++|++|+
T Consensus 18 ~se~~~F~~l~~~y~~~~~~~~~~p-~~~~~~~~~~~~nT~lLl~Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~Lg~~F~ 96 (184)
T cd02865 18 AVEGTLFALLISAYFMRMTSGDWQP-GAPLPLPNLLSLNTAVLAASSVAMQWARRAARRNRRVLARLGLALAGALALAFL 96 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC-CccccCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998777666 555667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
+.|..||.++..+|.+|++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|++++||||||++|++
T Consensus 97 ~~q~~E~~~~~~~g~~~~~~~~~s~f~~ltg~H~lHV~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~yWHFvd~vWl~ 176 (184)
T cd02865 97 AGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLV 176 (184)
T ss_pred HHHHHHHHHHHhcCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy2389 161 IFTFIYLI 168 (172)
Q Consensus 161 ~~~~~yl~ 168 (172)
+|+++|++
T Consensus 177 lf~~vYl~ 184 (184)
T cd02865 177 LLALLYGT 184 (184)
T ss_pred HHHHHHHC
Confidence 99999974
No 8
>PLN02194 cytochrome-c oxidase
Probab=100.00 E-value=2.9e-44 Score=288.26 Aligned_cols=168 Identities=25% Similarity=0.384 Sum_probs=154.8
Q ss_pred ChHHHHHHHHHHHHHHHhcc---CC--CCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN---YA--EGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~---~~--~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+.. ++ .||| +.+++|++ .+.+||++|++||.++++|++++|++++++.+.++..|+
T Consensus 91 ~SE~~~F~~~F~ay~~~~~~~~~~~g~~Wpp~g~~~~~~~~~~llNT~iLlsSs~tv~~A~~a~~~~~~~~~~~~L~~Ti 170 (265)
T PLN02194 91 VSEVMFFFAFFWASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATV 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCcCccccccccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48999999999999997742 22 3654 55667764 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|++|+.+|..||.+ .|+++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus 171 ~LG~~Fl~lQ~~Ey~~---~~f~~~~~~fgS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHF 247 (265)
T PLN02194 171 LLALVFTGFQGMEYYQ---APFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHF 247 (265)
T ss_pred HHHHHHHHHHHHHHHH---cCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Confidence 9999999999999998 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy2389 154 LDIIWIGIFTFIYLIGTL 171 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~~ 171 (172)
||++|+++|+++|++|.+
T Consensus 248 VDvVWl~Lf~~vY~~~~~ 265 (265)
T PLN02194 248 VDVVWLFLFVSIYWWGGI 265 (265)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999863
No 9
>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."
Probab=100.00 E-value=5.3e-44 Score=284.38 Aligned_cols=165 Identities=30% Similarity=0.500 Sum_probs=153.4
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
.||+++|++++++|++.+... .+||| +.+++|+ ..|.+||++|++||.++++|++++|++++++.+.++..|+
T Consensus 72 ~SE~~~F~~~f~ayf~~~~~p~~~~g~~Wpp~gi~~~~~~~lp~lnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti 151 (243)
T cd01665 72 LSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTIILLSSGATVTWAHHALLLGNRKKAILGLILTI 151 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCCcCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999988642 24665 4455665 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|..||.+ .+++++||+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 152 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF 228 (243)
T cd01665 152 LLGVYFTGLQAYEYYE---ASFTISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHF 228 (243)
T ss_pred HHHHHHHHHHHHHHHH---CCcCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2389 154 LDIIWIGIFTFIYLI 168 (172)
Q Consensus 154 vd~vWl~~~~~~yl~ 168 (172)
||++|+++|.++|++
T Consensus 229 VDvVWl~lf~~vY~~ 243 (243)
T cd01665 229 VDVVWLFLFVFVYWW 243 (243)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999985
No 10
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=7.1e-44 Score=285.77 Aligned_cols=167 Identities=26% Similarity=0.465 Sum_probs=154.3
Q ss_pred ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+... + .||| +.+++|+ ..+.+||++|++||.++++|++++|++++++.+.++..|+
T Consensus 87 ~SE~~fF~s~f~ayf~~~~~~~~~~g~~Wpp~g~~~~~~~~~pllnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~ti 166 (260)
T MTH00189 87 TSEVFFFLGFFWAFFHSSLAPTVELGMCWPPTGIEPLNPFEVPLLNTAVLLSSGVTVTWAHHSLMEGNRKEAIQALTLTV 166 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCccCCcCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999987532 3 4764 5456665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|.+||.+ .|+++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus 167 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTG~HglHVi~G~i~L~i~~~r~~~~~~~~~~~~~~e~~a~YWHF 243 (260)
T MTH00189 167 ILGVYFTLLQAMEYYE---APFTIADSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHF 243 (260)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 244 VDvVWl~lf~~vY~~~~ 260 (260)
T MTH00189 244 VDVVWLFLYVSIYWWGS 260 (260)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 11
>MTH00219 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=1.1e-43 Score=284.75 Aligned_cols=167 Identities=26% Similarity=0.461 Sum_probs=154.4
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+... .+||| +.+.+|+ ..+.+||++|++||.++.+|+++++++++++.+.++..|+
T Consensus 89 ~SEv~~F~s~f~ayf~~~~~p~~~~g~~Wpp~gi~~~~~~~ipllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti 168 (262)
T MTH00219 89 VSEILFFFAFFWAFFHSSLAPTIELGSCWPPTGINPLNPFQVPLLNTAVLLASGVTVTWAHHSLMESNHKEAQQGLLFTI 168 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999988532 24654 4455666 4688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|+.|+.+|.+||.+ +|++++||.|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 169 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~Ff~lTGfHglHViiG~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF 245 (262)
T MTH00219 169 LLGLYFTMLQGMEYLE---ASFSISDSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHF 245 (262)
T ss_pred HHHHHHHHHHHHHHHH---CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 246 VDvVWl~lf~~iY~~~~ 262 (262)
T MTH00219 246 VDVVWLFLYVSIYWWGS 262 (262)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999874
No 12
>MTH00024 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=1.4e-43 Score=284.31 Aligned_cols=167 Identities=28% Similarity=0.463 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+... ..||| +.+++|+ ..|.+||++|++||.++++|++++++|++++.+.++..|+
T Consensus 88 ~SE~~~F~s~f~ayf~~~~~p~~~~g~~wpp~gi~~~~~~~~pllnT~iLL~Ss~~v~~a~~a~~~~~~~~~~~~L~~Ti 167 (261)
T MTH00024 88 LSEVLFFFSFFWAFFHSSLAPAVELGVVWPPQGINPLNPFSVPLLNTAVLLSSGATVTWAHHAIISGKRKEAILGLFLTV 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcccCCCcCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999977532 14654 4455665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|..||.+ .|++++||.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus 168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Ff~lTGfHglHVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~a~YWHF 244 (261)
T MTH00024 168 FLGVLFTGLQAIEYYE---APFAISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHF 244 (261)
T ss_pred HHHHHHHHHHHHHHHH---cCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 245 VDvVWl~lf~~iY~~~~ 261 (261)
T MTH00024 245 VDVVWLFLYLCIYWWGS 261 (261)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 13
>MTH00009 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=1.7e-43 Score=283.39 Aligned_cols=167 Identities=27% Similarity=0.457 Sum_probs=153.7
Q ss_pred ChHHHHHHHHHHHHHHHhcc-CC----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN-YA----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~-~~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+.. +| +||| +.+++++ ..|.+||++|++||.++++|++++|+|++++.+.++..|+
T Consensus 86 ~SE~~~F~~~f~ay~~~~~~~~~~~g~~Wpp~g~~~~~~~~~p~lnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~Ti 165 (259)
T MTH00009 86 ASEVMFFFAFFWAFFHSSLAPTPELGCSWPPTGIEPLNPFSVPLLNTAVLLASGVTVTWAHHSLIEGDRPEATQALILTV 165 (259)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCCCCCCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48999999999999998653 23 3654 4455665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|++|+..|..||.+ +|++++||.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus 166 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTG~HglHVivG~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF 242 (259)
T MTH00009 166 LLGAYFTFLQAGEYIE---APFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGHHFGFEAAAWYWHF 242 (259)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 243 VDvVWl~lf~~iY~~~~ 259 (259)
T MTH00009 243 VDVVWIFLYLCIYWWGS 259 (259)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 14
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=2.1e-43 Score=283.62 Aligned_cols=167 Identities=26% Similarity=0.441 Sum_probs=153.8
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+... ..||| +.+++|+ ..+.+||++|++||.++.+|++++++|++++.+.+|..|+
T Consensus 89 ~SE~~~F~s~f~ay~~~~~~p~~~~g~~wpp~g~~~~~~~~~pllnT~iLl~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti 168 (262)
T MTH00052 89 VSEVCLFFSFFWAFFHSSLAPTIEIGAVWPPRGVDPLNPFSVPLLNTAVLLSSGATVTWAHHGIISGKRKEAIIGLALTV 168 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999987532 23654 4455665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|+.|+..|..||.+ .|+++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 169 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~HglHVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~a~YWHF 245 (262)
T MTH00052 169 ALGLLFTGLQAMEYYE---APFTISDSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRHHHFGFEAAAWYWHF 245 (262)
T ss_pred HHHHHHHHHHHHHHHH---cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 246 VDvVWl~lf~~iY~~g~ 262 (262)
T MTH00052 246 VDVVWLFLFIFMYWWGS 262 (262)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 15
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=2e-43 Score=282.98 Aligned_cols=167 Identities=25% Similarity=0.438 Sum_probs=154.1
Q ss_pred ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+... + .||| +.+.+|+. .+.+||++|++||.++++|++++|++++++.+.+|..|+
T Consensus 87 ~SE~~~F~s~F~a~~~~~~~~~~~~g~~wpp~gi~~~~~~~~pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti 166 (260)
T MTH00039 87 TSEVCFFFAFFWAFFHSSLAPTVEIGVSWPPTGINPINPFLVPLLNTAVLLSSGVTITWSHHSILEGNRTEAIQALFLTV 166 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCccCCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999987642 2 3654 44556664 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|.+||.+ .|++++||+|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus 167 ~LG~~Fl~~Q~~Ey~~---~~f~~~d~~ygS~Ff~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHF 243 (260)
T MTH00039 167 LLGLYFTALQAWEYYD---APFTIADSVYGSTFFVATGFHGLHVIIGTTFLAVCLFRLINHHFSNNHHFGFEAAAWYWHF 243 (260)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 244 VDvVWlflf~~iY~~~~ 260 (260)
T MTH00039 244 VDVVWLFLYVCIYWWGS 260 (260)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999874
No 16
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=2.2e-43 Score=282.93 Aligned_cols=167 Identities=29% Similarity=0.511 Sum_probs=153.7
Q ss_pred ChHHHHHHHHHHHHHHHhcc-CCC----CCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN-YAE----GPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~-~~~----~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+.. +|+ ||| +.+++|+ ..+.+||++|++||.++++|++++|++++++.+.+|..|+
T Consensus 88 ~SE~~~F~s~F~ay~~~~~~~~~~~g~~wpp~g~~~~~~~~~pllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~L~~Ti 167 (261)
T MTH00130 88 TSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLTLTI 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48999999999999998743 333 654 4455665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|..||.+ .++++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus 168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~~gS~fy~lTG~Hg~HVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF 244 (261)
T MTH00130 168 LLGFYFTFLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHF 244 (261)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|+++|++|.
T Consensus 245 VDvVWlflf~~~Y~~g~ 261 (261)
T MTH00130 245 VDVVWLFLYISIYWWGS 261 (261)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 17
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=100.00 E-value=3e-43 Score=282.76 Aligned_cols=167 Identities=30% Similarity=0.599 Sum_probs=148.1
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+... .+||| +.+++++ ..+.+||++|++||.++.+|+++.|+||+++.+.++..|+
T Consensus 85 ~SE~~~F~s~f~a~f~~~~~~~~~~g~~wpP~gi~~~~~~~lp~lnT~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 164 (258)
T PF00510_consen 85 LSEVMFFASFFWAYFHSSLSPSIELGMQWPPVGIEPLNPLGLPLLNTILLLSSSVTVTWAHHALKRGNRKAARLWLLLTI 164 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTTTTSSSS-TT---TTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhcccccccchhccchHHHHhHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 489999999999999876432 34765 4445554 4688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|.+||.+ ++++++||.|+|+||++||+|++||++|++++.++..|..+++.+++++.++|.+++||||
T Consensus 165 ~LG~~Fl~~Q~~Ey~~---~~~~~~~~~~gS~fy~lTG~Hg~HV~~G~~~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF 241 (258)
T PF00510_consen 165 LLGLLFLVLQVYEYSH---AGFTISDSVYGSFFYLLTGFHGLHVIIGLIFLIIVLFRMLRGHFSPERHLGFEAAAWYWHF 241 (258)
T ss_dssp HHHHHHHHHHHHHHHH---CSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BTTB-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hhhccccccccchhhhhhHHHHHHhhcchHHHHHHHHHHhhccCCchhhhhHHHHHHHHHH
Confidence 9999999999999987 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 242 VDvvWl~lf~~~Y~~gs 258 (258)
T PF00510_consen 242 VDVVWLFLFPLLYLWGS 258 (258)
T ss_dssp HHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHheecC
Confidence 99999999999999984
No 18
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=4.7e-43 Score=281.17 Aligned_cols=166 Identities=26% Similarity=0.490 Sum_probs=152.9
Q ss_pred ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+..+ + +||| +.+.+|+ ..|.+||++|++||+++++|++++|+|++++.+.++..|+
T Consensus 88 ~SE~~~F~s~F~af~~~~~~~~~~~g~~Wpp~g~~~~~~~~~pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti 167 (261)
T MTH00075 88 TSEVFFFLGFFWAFYNSSLAPTPELGECWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSIMQGNRKEAIQSLALTI 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999887432 2 4654 4455665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|..|+.+|..||.+ .++++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~HglHViiG~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF 244 (261)
T MTH00075 168 ILGLYFTLLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFHFTSQHHFGFEAAAWYWHF 244 (261)
T ss_pred HHHHHHHHHHHHHHHH---CCCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy2389 154 LDIIWIGIFTFIYLIG 169 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~ 169 (172)
||++|+++|.++|++|
T Consensus 245 VDvVWl~lf~~vY~~~ 260 (261)
T MTH00075 245 VDVVWLFLYVSIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999987
No 19
>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=5.1e-43 Score=281.28 Aligned_cols=167 Identities=26% Similarity=0.479 Sum_probs=153.7
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|+++|... ..||| +.+.+++ ..+.+||++|++||.++.+|++++|++++++.+..+..|+
T Consensus 86 ~SE~~~F~slf~ayf~~~~~p~~~~~~~wpp~g~~~~~~~~~pllnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~ti 165 (259)
T MTH00141 86 VSEVCFFFAFFWAYFHSSLAPSVEIGCCWPPVGIEPLNPFQVPLLNTAVLLASGVTVTWAHHSLMEGDYKSALQGLGLTI 165 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccCCCCCCccccccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999999998632 23654 3445665 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|++.|..||.+ .|+++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 166 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~HglHVi~G~i~l~~~~~r~~~~~~~~~~~~~~e~~a~YWHF 242 (259)
T MTH00141 166 ILGVYFTFLQAGEYYE---ASFSIADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHF 242 (259)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 243 VDvvWl~lf~~~Y~~~~ 259 (259)
T MTH00141 243 VDVVWLFLYLSIYWWGS 259 (259)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 20
>MTH00099 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=6.5e-43 Score=280.49 Aligned_cols=167 Identities=28% Similarity=0.494 Sum_probs=152.9
Q ss_pred ChHHHHHHHHHHHHHHHhcc-CC----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN-YA----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~-~~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+.. +| .||| +.+.+|+ ..+.+||++|++||.++.+|+++.|++++++.+.++..|+
T Consensus 88 ~SE~~~F~s~f~af~~~~~~~~~~~g~~wpp~g~~~~~~~~~pllnT~lLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~Ti 167 (261)
T MTH00099 88 ISEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHMLQALFITI 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhccCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48999999999999887633 23 4664 4445565 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|++|+..|..||.+ .++++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~Hg~HVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF 244 (261)
T MTH00099 168 LLGLYFTLLQASEYYE---APFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHF 244 (261)
T ss_pred HHHHHHHHhHHHHHHH---CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 245 VDvVWlflf~~vY~~g~ 261 (261)
T MTH00099 245 VDVVWLFLYVSIYWWGS 261 (261)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 21
>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=7.5e-43 Score=279.30 Aligned_cols=166 Identities=25% Similarity=0.453 Sum_probs=150.8
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
.||+++|++++++|++.+... .+||| +.+.+|+. .+.+||++|++||.++++|++++|+++ ++.+.++..|+
T Consensus 84 ~SE~~~F~~~f~ayf~~~~~~~~~~g~~wpp~gi~~~~~~~~pllnT~iLL~Ss~tvt~a~~a~~~~~-~~~~~~L~~Ti 162 (256)
T MTH00083 84 FSEFMFFFSIFWTFFDAALVPVHELGGVWSPIGIHLVNYLGVPLLNTIILLSSGVSVTWSHHSLCLSN-KSCTNSLLLTC 162 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhcccCcccCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 489999999999999986542 34754 44556654 688999999999999999999997754 67889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|..||.+ .++++++|+|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 163 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHF 239 (256)
T MTH00083 163 FLGLYFTSFQLMEYKE---ASFSISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHF 239 (256)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|+
T Consensus 240 VDvVWlflf~~vY~~g~ 256 (256)
T MTH00083 240 VDVVWLFLFVFVYWWSY 256 (256)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999874
No 22
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=8.2e-43 Score=279.78 Aligned_cols=167 Identities=28% Similarity=0.510 Sum_probs=152.5
Q ss_pred ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+..+ + +||| +.+++|+ ..+.+||++|++||.++++|+++.|+|++++.+.+|..|+
T Consensus 88 ~SE~~~F~s~F~aff~~~~~~~~~~g~~wpp~g~~~~~~~~lpllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti 167 (261)
T MTH00118 88 TSEVFFFLGFFWAFYHSSLAPTPELGGQWPPTGIKPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGNRKQAIQALTLTI 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhcCCCCCCCcccccCccccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 489999999999997755432 2 4764 4445565 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+.+|..||.+ .|+++++|+|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 168 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~fy~lTG~HglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF 244 (261)
T MTH00118 168 LLGLYFTALQAMEYYE---APFTISDSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHFTTNHHFGFEAAAWYWHF 244 (261)
T ss_pred HHHHHHHHHHHHHHHH---cCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 245 VDvVWlflf~~vY~~~~ 261 (261)
T MTH00118 245 VDVVWLFLYISIYWWGS 261 (261)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999999873
No 23
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=100.00 E-value=1.4e-42 Score=265.96 Aligned_cols=165 Identities=28% Similarity=0.580 Sum_probs=154.4
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCC-cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGP-TAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF 79 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~-~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F 79 (172)
++|+++|++++++|+++|..+|++| ++.++++++.+.+||+++++||++++.+.++.|++++++.+.++..|+++|++|
T Consensus 18 ~se~~~F~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~tlll~~ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F 97 (183)
T cd00386 18 LSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARRGNRKKARLWLLLTILLGLAF 97 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999887754 444556778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389 80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI 159 (172)
Q Consensus 80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl 159 (172)
++.|..||.+ .+.+|++|+|+|.||++||+|++||++|++++.++..|.++++.+++++.++|++++||||||++|+
T Consensus 98 l~~q~~E~~~---~~~~~~~~~~~s~f~~ltglH~~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvd~vWl 174 (183)
T cd00386 98 LGLQAYEYSH---LIFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWL 174 (183)
T ss_pred HHHHHHHHHH---CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 4669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2389 160 GIFTFIYLI 168 (172)
Q Consensus 160 ~~~~~~yl~ 168 (172)
++|+++|++
T Consensus 175 ~lf~~lYl~ 183 (183)
T cd00386 175 FLFPLVYLW 183 (183)
T ss_pred HHHHHHHhC
Confidence 999999974
No 24
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=1.3e-42 Score=277.98 Aligned_cols=163 Identities=27% Similarity=0.472 Sum_probs=149.7
Q ss_pred ChHHHHHHHHHHHHHHHhccCC-----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYA-----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~-----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++.+.... .||| +.+.+|+ ..|.+||.+|++||.++++|+++.++|++++.+.++..|+
T Consensus 86 ~SE~~~F~~~f~ayf~~~~~p~~~~g~~wpp~g~~~~~~~~~p~lnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~t~ 165 (255)
T MTH00155 86 VSEVFFFISFFWAFFHSSLSPNIELGMIWPPKGIIPFNPFQIPLLNTIILLSSGVTVTWAHHSLMENNYKQATQSLFFTI 165 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCCCccccCCccchhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4899999999999999875321 3654 4455554 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|.+|+..|..||.+ .|+++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus 166 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~~gS~Fy~lTG~Hg~HVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF 242 (255)
T MTH00155 166 ILGIYFTMLQAYEYYE---APFTIADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFGFEAAAWYWHF 242 (255)
T ss_pred HHHHHHHHHHHHHHHH---CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2389 154 LDIIWIGIFTFIY 166 (172)
Q Consensus 154 vd~vWl~~~~~~y 166 (172)
||++|+++|.++|
T Consensus 243 VDvVWl~lf~~vY 255 (255)
T MTH00155 243 VDVVWLFLYISIY 255 (255)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999987
No 25
>cd02864 Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00 E-value=4.2e-42 Score=267.14 Aligned_cols=168 Identities=30% Similarity=0.521 Sum_probs=148.9
Q ss_pred ChHHHHHHHHHHHHHHHhccCCC-CCcccc-------cCCchH--HHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAE-GPTAIQ-------IFKLPS--VALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLS 70 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~-~~~~~~-------~~~~~~--~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~ 70 (172)
.||+++|++++++|+++|.++|+ ||++.+ ..+++. +.+||++|++||.+++.|.++.|++|+++.+.++.
T Consensus 18 ~sE~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~ 97 (202)
T cd02864 18 LSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFILITSSGTMAMAVNFGYRGNRKAAARLML 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCCCccccccccCCcccchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 48999999999999999987765 565422 223333 34899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCcCc-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhh
Q psy2389 71 ITTLLGFFFVILELNEFIELIN-RNFGP-----WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLIL-ENQRR 143 (172)
Q Consensus 71 ~t~~lg~~Fl~~q~~e~~~l~~-~g~~~-----~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~-~~~~~ 143 (172)
.|+++|.+|++.|..||.++.. .|.+| ++|.|+|+||++||+|++||++|++++.++..|..+|++++ +++.+
T Consensus 98 ~t~~LG~~Fl~~q~~E~~~~~~~~~~~~~~~~~~~~~f~s~f~~ltg~HglHV~~G~i~l~~~~~~~~~g~~~~~~~~~~ 177 (202)
T cd02864 98 ATALLGATFVGMQAFEWTKLIVEEGVRPWGNPWGAAQFGASFFMITGFHGTHVTIGVIYLIIIARKVWRGKYQRIGRYEI 177 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence 9999999999999999999875 45555 46999999999999999999999999999999999999985 56789
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh
Q psy2389 144 IICLSMFWHFLDIIWIGIFTFIYLI 168 (172)
Q Consensus 144 ~~~~~~yWhfvd~vWl~~~~~~yl~ 168 (172)
+|++++||||||++|+++|+++|++
T Consensus 178 ~~~~~~YWHfvd~vWl~lf~~lYl~ 202 (202)
T cd02864 178 VEIAGLYWHFVDLVWVFIFAFFYLW 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999984
No 26
>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=1.2e-41 Score=275.39 Aligned_cols=167 Identities=27% Similarity=0.497 Sum_probs=150.8
Q ss_pred ChHHHHHHHHHHHHHHHhccC-----CCCC-cccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHH---------h-----
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-----AEGP-TAIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQ---------K----- 59 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-----~~~~-~~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~---------~----- 59 (172)
+||+++|++++++|++.+... ..|| .+.+.+|+ ..+.+||++|++||+++.+|+++++ +
T Consensus 88 ~SEv~fF~~~F~af~~~~~~p~~~~g~~wpp~gi~~~~~~~~pllnT~iLl~Ss~tvt~a~~a~~~~~~~~~~~~~~~~~ 167 (297)
T MTH00028 88 LSEVCLFFAFFWAFFHSSLAPSVELGSVWPPKGIEALDPFAVPLLNTTILLSSGATVTWAHHAIIGTGNPASLEKGTQGI 167 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCCcCccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhccccc
Confidence 489999999999999988732 1365 45567777 4688999999999999999999874 3
Q ss_pred ----------------------cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHH
Q psy2389 60 ----------------------KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHI 117 (172)
Q Consensus 60 ----------------------~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv 117 (172)
|++++.+.+|..|+++|++|+++|..||.+ .++++++|.|+|+||++||+|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ti~LG~~Fl~lQ~~EY~~---~~ft~~dsvygS~Fy~lTGfHglHV 244 (297)
T MTH00028 168 EGPNPSNGAPPDPQKGPTFLLSDFRTNAVIGLLMTILLGIIFTGLQAFEYKE---ASFAISDSVYGSTFFMLTGTHGLHV 244 (297)
T ss_pred ccccccccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCCCcchHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999998 5899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q psy2389 118 IFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 118 ~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~~~~~~yl~~~ 170 (172)
++|++++.++..|..+++++++++.++|++++||||||++|+++|.++|++|.
T Consensus 245 iiG~i~L~v~l~r~~~g~~s~~~~~~~e~~a~YWHFVDvVWLfLf~~iY~~~~ 297 (297)
T MTH00028 245 LVGTTFLIVCFIRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWWGS 297 (297)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999873
No 27
>MTH00049 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=1.3e-37 Score=243.46 Aligned_cols=153 Identities=27% Similarity=0.435 Sum_probs=132.1
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
.||+++|++++++|++.|..+|+.|+ .+...+.+||.+|++||.+++.|+++.|+ ++.+.++..|+++|..|+
T Consensus 62 ~SE~~~F~~lf~ay~~~~~~~~~~~~----~~~~lp~lnT~iLl~SS~tv~~a~~~~~~---~~~~~~L~~T~~LG~~Fl 134 (215)
T MTH00049 62 LSEVIIFGSLLVCCLWFDDWSYISLS----SSLEIPFVGCFLLLGSSITVTAYHHLLGW---KYCDLFLYLTILLGLLFV 134 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccc----chhhhHHHHHHHHHHHHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHH
Confidence 48999999999999999876554221 12345779999999999999999988753 456778999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
+.|..||.+ .+.++++|+|+|.||++||+|++||++|++++..+..|..+ ++++.+.|.+++||||||++|++
T Consensus 135 ~lQ~~Ey~~---~~~~~~~~~f~S~ff~lTGlHglHVi~G~i~L~~~~~~~~~----~~~~~~~e~~~~YWHFVD~VWl~ 207 (215)
T MTH00049 135 VLQVFEFEE---SGVNSLDSSYYASCFCTVGLHFSHVVLGVVGLSTLLLVGSS----SFGVYRSTVLTWYWHFVDYIWLL 207 (215)
T ss_pred HHHHHHHHH---CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHHHHHH
Confidence 999999998 58999999999999999999999999999999999887432 33456679999999999999999
Q ss_pred HHHHHHH
Q psy2389 161 IFTFIYL 167 (172)
Q Consensus 161 ~~~~~yl 167 (172)
+|+++|+
T Consensus 208 lf~~vYl 214 (215)
T MTH00049 208 VYLIVYV 214 (215)
T ss_pred HHHHHHh
Confidence 9999997
No 28
>KOG4664|consensus
Probab=100.00 E-value=2e-36 Score=232.81 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
.+|.++|.+++++++...... + .||| +.+.+++ ..|++||.+|+.|+.++.+|++++-++++++....+..++
T Consensus 88 ~se~~~f~~~f~~ff~s~l~pt~elg~~wpp~gi~~~~p~evPlLnt~ILLsSgvtvtwahhsli~~~~~~~~~~ll~t~ 167 (261)
T KOG4664|consen 88 LSEVLFFFGIFWAFFHSSLAPTVELGGCWPPTGIEPVNPLEVPLLNTSILLSSGVTVTWAHHSLIEGNRKKATSSLLITV 167 (261)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccccCcCCCccccCCCCcCCcchhhHHHHhccchHHHHHHHHHhcchhhhhhhhHHHH
Confidence 479999999999999865432 2 2654 5566666 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++++.|...|..||.+ ++++++|+.|||.||+-||+|++||++|..++.++.+|.++++++++++.+.|.+++||||
T Consensus 168 ll~vyFt~~Q~~EY~e---apFTIsDgIyGStFfvaTGFHg~Hviig~~fL~ic~iRql~~Hft~~HH~GfEaAa~Ywhf 244 (261)
T KOG4664|consen 168 LLAVYFTGFQLIEYAE---APFTISDGIYGSTFFVATGFHGFHVIIGTLFLPICFIRQLNNHFTKNHHVGFEAAAWYWHF 244 (261)
T ss_pred HHHHHHHHHHHHHHhc---CceEeecccceeeeeeehhhhhHHHHHHHHHHHHHHHHHHhhhcccccccchhhhheeeee
Confidence 9999999999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
+|++|+++++.+|++|.
T Consensus 245 vdvvwlfl~v~~ywwg~ 261 (261)
T KOG4664|consen 245 VDVVWLFLYVSIYWWGG 261 (261)
T ss_pred cceeeEEeEEEEEeccC
Confidence 99999999999999873
No 29
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=98.55 E-value=1.5e-05 Score=58.04 Aligned_cols=128 Identities=8% Similarity=0.096 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC--cCccHHHHHHHHHHHH
Q psy2389 35 SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFG--PWRSAFLSSFFVLVGM 112 (172)
Q Consensus 35 ~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~--~~~~~~~s~~~~ltG~ 112 (172)
.|.+|+.+-..|......+...+||||.+.-++.+..+..+..+|+..=.. .+.. .|.+ ...+..-..|+.+...
T Consensus 4 lp~l~a~~~~~s~~ll~~g~~~Ir~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~--~~~~-~g~~~f~g~~~ir~~Y~~iL~~ 80 (133)
T PF04238_consen 4 LPDLNAVLNAISAVLLLIGWYFIRRGRIKLHRKLMLTAFVLSALFLVSYLY--YHFL-GGSTPFGGPGWIRPVYLFILIS 80 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-cCCcccCCCccHHHHHHHHHHH
Confidence 356777777788888888999999999999999999999999999886443 3322 2332 1223334488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHHHHHHHH
Q psy2389 113 HGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIY 166 (172)
Q Consensus 113 H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~~~~~~y 166 (172)
|.+-..+.+.+..+.+.+..+++.++.|+.. +...--|=++.+..+++|..+|
T Consensus 81 Hi~LA~~~~pL~l~tl~~a~~~~~~~Hrki~-r~t~piWlyvsvTGvvVYlmLy 133 (133)
T PF04238_consen 81 HIILAIVALPLVLYTLYRALRGRFTRHRKIG-RWTFPIWLYVSVTGVVVYLMLY 133 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 9999988999999999999998755444333 6678889999999999998775
No 30
>COG2322 Predicted membrane protein [Function unknown]
Probab=98.47 E-value=3.1e-05 Score=57.80 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC--cCccHHHHHHHHHHHH
Q psy2389 35 SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFG--PWRSAFLSSFFVLVGM 112 (172)
Q Consensus 35 ~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~--~~~~~~~s~~~~ltG~ 112 (172)
.+.+|++.-..|..+...+.+.+||||.++-++.+..+..+...|++.-..- +.. .+-+ ...+.|-..||.+.-.
T Consensus 45 ~p~lnai~~~~s~~~llag~~~Ikrg~i~~Hk~aMltA~~l~l~FlvlYltr--~~l-~~~t~f~~~G~~k~~Y~~iL~~ 121 (177)
T COG2322 45 LPMLNAIFNSLSFIFLLAGWRLIKRGNIEKHKRAMLTAFTLALVFLVLYLTR--HGL-GGETAFGGTGIYKGIYFFILIT 121 (177)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-cccccCCCCeeeehHHHHHHHH
Confidence 3668888777888888889999999999999999999999999999865442 211 1222 4457888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2389 113 HGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYL 167 (172)
Q Consensus 113 H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~~~~~~yl 167 (172)
|-.-..+++....+.+++..++..+..|+. .+-.+--|-++.+..+.+|..+|-
T Consensus 122 Hi~LA~i~vPLal~al~~a~~~~~~rHrki-~r~ta~~Wlyva~tGv~VYLmL~~ 175 (177)
T COG2322 122 HIILAAINVPLALYALILAWKGLYERHRKI-GRWTAPLWLYVALTGVVVYLMLYV 175 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHhcchhhhhhee-eehhhHHHHHHHHHHHHHhheeec
Confidence 999999999999999998888774433332 266778899999999998887763
No 31
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=69.57 E-value=33 Score=25.40 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2389 50 CGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIEL 90 (172)
Q Consensus 50 ~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l 90 (172)
+..+.+..|.+...+.|-.....+++.+.+++.|+-+|.+.
T Consensus 31 ~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~~~y~~~ 71 (149)
T PF11694_consen 31 IFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQYSDYQQN 71 (149)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777888888888899999999999999874
No 32
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=47.48 E-value=78 Score=21.77 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 101 AFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 101 ~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
.-....-...|+-.-|.++|++.........++ ..+.+....-.-..|||.
T Consensus 29 ~~~~~~~~~~Gi~~~~~l~g~i~g~~~~~~~r~--lK~g~g~~~l~h~~YW~l 79 (101)
T PRK13707 29 LIPAAICIGWGITTSKYLFGIIAAVLVWFGIRK--LKKGRGSSWLRDLIYWYL 79 (101)
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH--HHcCCChhHHHHHHHHhc
Confidence 334445566677777888888766555433333 123345555667889983
No 33
>COG3302 DmsC DMSO reductase anchor subunit [General function prediction only]
Probab=38.21 E-value=1e+02 Score=25.34 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHH
Q psy2389 62 VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGM 112 (172)
Q Consensus 62 ~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~ 112 (172)
....+.++.++.++|++|+..+..-|.. ..+--.+|.|-...|.+|-.
T Consensus 107 ~~~~~~~l~laav~Gvvfv~~m~~VY~~---~tV~tW~~~~T~~~f~lT~~ 154 (281)
T COG3302 107 TALGNLWLLLAAVLGVVFVWMMAQVYSI---TTVPTWHSGYTLLAFFLTVL 154 (281)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcc---CccchHhhcchHHHHHHHHH
Confidence 3455557889999999999998777733 22333467777666666544
No 34
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=32.17 E-value=2.4e+02 Score=21.74 Aligned_cols=41 Identities=10% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2389 46 SSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNE 86 (172)
Q Consensus 46 Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~e 86 (172)
|-++...+..+.+|+|.+..+.....+.++|++-+..-..|
T Consensus 81 S~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~ 121 (186)
T PF07086_consen 81 SLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMY 121 (186)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667778888888888887777777777655554443
No 35
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=31.51 E-value=96 Score=24.11 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy2389 71 ITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVG--------MHGLHIIFGIIWLITLI 128 (172)
Q Consensus 71 ~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG--------~H~~Hv~iG~i~l~~~~ 128 (172)
.+.++|+.|. .+.++|.-|.+.+.+ ++.|....=-.+- .+.+|.++|+.+++..+
T Consensus 16 tsF~lGvlf~-~~pyD~~~Lw~~~~t--~~~~d~~~~hy~~l~~sP~~v~~~Lh~V~~LGliG~~i 78 (196)
T smart00786 16 TSFFLGILFA-NFPYDYPLLWSPDPT--PSAFDAALRHYQFLHASPLLVLYILHIVIGLGLIGFFI 78 (196)
T ss_pred HHHHHHHHHh-cCccccchhcCCCCC--HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 4566676664 466777777654444 3333332222233 34688888887777543
No 36
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.46 E-value=1.7e+02 Score=19.85 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Q psy2389 48 LSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELN 85 (172)
Q Consensus 48 ~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~ 85 (172)
.+...|.+++|++|...-+.++.-+..++......+..
T Consensus 54 ~~~~~a~~~ar~~~i~~Hr~wM~rsy~~~~~~~~~r~~ 91 (103)
T PF10067_consen 54 ITTFLAVRAARRGRIAAHRRWMIRSYALALGAVTLRLL 91 (103)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999899988888887777766654
No 37
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=30.77 E-value=96 Score=22.29 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy2389 107 FVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143 (172)
Q Consensus 107 ~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~ 143 (172)
|.+.++-++-+++|++.++..+-.-++++..+.....
T Consensus 37 ysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~~~k~~ 73 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLLGRSIQANRNRKMQPQEKQT 73 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhccccccccccccC
Confidence 7788888899999999998877655555554443333
No 38
>KOG4332|consensus
Probab=29.55 E-value=3.5e+02 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2389 103 LSSFFVLVGMHGLHIIFGIIWLITLILQI 131 (172)
Q Consensus 103 ~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~ 131 (172)
.+....+.|+-.+-..+|+.+.-++-.|.
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSimkmRs 370 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSIMKMRS 370 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 44445588999999999999888665543
No 39
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=28.91 E-value=3e+02 Score=24.36 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Q psy2389 53 AIIQAQKKYVNGVIFWLSITTLLGFFFVILELN 85 (172)
Q Consensus 53 a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~ 85 (172)
|.+-+|+++.+..++.+..+..+|.++...|..
T Consensus 206 Ay~llk~r~~~~~k~~l~ia~~~~~~~~~~~~~ 238 (457)
T COG1271 206 AYYLLKGRDKEFAKKSLKIALVFGLIFAILQIV 238 (457)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667778999999999999999999853
No 40
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=25.67 E-value=2.1e+02 Score=19.11 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 100 SAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 100 ~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
..--+..-+..|+-.-|.++|++.........++- .+.+..+.-.-..||+.
T Consensus 22 e~~~~~~~~~~gi~~~~~~~g~i~g~~~~~~~~k~--K~~~~~g~l~h~lYW~~ 73 (95)
T PF07178_consen 22 EFIPALILFVIGILSGHFLIGLILGIVLWWGYRKF--KKGRGRGFLLHLLYWYG 73 (95)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HccCCccHHHHHHHHHc
Confidence 33345555666676777778877655444433332 23344555666889985
No 41
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=25.00 E-value=1.7e+02 Score=22.98 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=29.5
Q ss_pred CcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2389 96 GPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIK 132 (172)
Q Consensus 96 ~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~ 132 (172)
.|+.|...+..+...-.-.+|+..|.+++...+.|..
T Consensus 45 ~Pss~geat~~f~mg~iRliHf~~g~vl~~~llfRiY 81 (227)
T COG1969 45 LPSSSGEATVNFYMGYIRLIHFSAGFVLTVALLFRIY 81 (227)
T ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777789999999999988888874
No 42
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=24.33 E-value=3.6e+02 Score=21.36 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q psy2389 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSIT 72 (172)
Q Consensus 38 ~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t 72 (172)
+++..-...+...+.+.+..|+||.|+..+.-...
T Consensus 109 l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~ 143 (238)
T PF03609_consen 109 LDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIG 143 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45555566677889999999999988777664433
No 43
>PRK11380 hypothetical protein; Provisional
Probab=22.78 E-value=4.8e+02 Score=22.21 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2389 64 GVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKK 133 (172)
Q Consensus 64 ~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~ 133 (172)
.+......++++|++|+..-+.. .|+ ++-. |.+.---+.-++.++++++.++.+..+
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~------~~~--~~~~-----~~~l~~~~~~~~~~~~~l~~~~~~~~~ 95 (353)
T PRK11380 39 LCKWGFYLTCVVAVMFVFAAITS------NGL--NERG-----YLLLITAGCSFLYLLIMLGLIVRAGFK 95 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCC--Cccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444555667777777654442 232 2222 333333444555566666666665553
No 44
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=21.67 E-value=4.5e+02 Score=21.46 Aligned_cols=40 Identities=18% Similarity=-0.019 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q psy2389 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGF 77 (172)
Q Consensus 38 ~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~ 77 (172)
+-++.-......++.|-++.|++|.++..+.-..+.++..
T Consensus 109 l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~ 148 (265)
T COG3715 109 LTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQA 148 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHH
Confidence 4444455566777889999999999888777666654443
No 45
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.18 E-value=4e+02 Score=20.70 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q psy2389 70 SITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMH--------GLHIIFGIIWLITLILQIK 132 (172)
Q Consensus 70 ~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H--------~~Hv~iG~i~l~~~~~~~~ 132 (172)
..+.++|+.|.- +.++|.-|...+.+ ++.+....--.+-+| .+|.++++.+++.++ +..
T Consensus 15 stsF~LG~lf~~-~~yD~~~Lw~~~~t--~~~~d~a~~hY~~l~~sP~~v~~~Lh~v~~lglig~~i-Kl~ 81 (196)
T PF08229_consen 15 STSFLLGVLFSN-WPYDYPTLWSSPPT--DEAFDNAETHYQTLHNSPPIVKYILHIVIGLGLIGLLI-KLY 81 (196)
T ss_pred hhHHHHHHHHHc-ccchhHHhcCCCCC--HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-HHc
Confidence 345666766654 56677777654433 344332222222233 677777777776543 443
No 46
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=20.59 E-value=1.1e+02 Score=21.82 Aligned_cols=51 Identities=25% Similarity=0.454 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcCc------CccHHHHHH--HHHHHHH-HHHHHHHHHHHH
Q psy2389 71 ITTLLGFFFVILELNEFIELINRNFGP------WRSAFLSSF--FVLVGMH-GLHIIFGIIWLI 125 (172)
Q Consensus 71 ~t~~lg~~Fl~~q~~e~~~l~~~g~~~------~~~~~~s~~--~~ltG~H-~~Hv~iG~i~l~ 125 (172)
.+...|++|+..-..++.- ++++ .++..+..+ |....+| .+|+++|+..+.
T Consensus 4 ~al~~G~~fl~~GilGFiP----g~t~~~~~~~~~~~~~~lfGlF~vn~lhn~vHl~~Gv~gl~ 63 (125)
T PF14325_consen 4 AALVIGVVFLLLGILGFIP----GFTTNYDEFAGHHSGGYLFGLFAVNPLHNIVHLLFGVAGLA 63 (125)
T ss_pred HHHHHHHHHHHHHHHhCcC----CCCCcccccccCCCCCeEEEeeeccHHHHHHHHHHHHHHHH
Confidence 4668889999888877652 3332 112223333 4566666 679999988777
Done!