Query psy2389
Match_columns 172
No_of_seqs 105 out of 1038
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:44:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m56_C Cytochrome C oxidase; m 100.0 6.7E-46 2.3E-50 297.6 22.2 167 1-170 88-266 (266)
2 1fft_C Ubiquinol oxidase; elec 100.0 2.4E-48 8.3E-53 301.4 5.8 171 1-171 34-204 (204)
3 1v54_C Cytochrome C oxidase po 100.0 2.4E-45 8.1E-50 293.8 22.0 167 1-170 88-261 (261)
4 1qle_C Cytochrome C oxidase po 100.0 9.6E-46 3.3E-50 297.6 18.0 167 1-170 95-273 (273)
5 2yev_A Cytochrome C oxidase po 100.0 1.7E-40 5.7E-45 298.9 0.0 166 1-168 626-791 (791)
6 2ei4_A AR 2, archaerhodopsin-2 23.3 1.5E+02 0.0052 22.5 5.5 20 149-169 178-197 (253)
7 1m0k_A BR, bacteriorhodopsin; 21.8 2.7E+02 0.0093 21.3 8.0 21 148-169 185-205 (262)
8 3arc_I Photosystem II reaction 19.9 73 0.0025 17.1 2.0 19 154-172 7-25 (38)
9 1xio_A Anabaena sensory rhodop 13.7 2E+02 0.007 22.0 4.2 20 149-169 167-186 (261)
10 2jaf_A Halorhodopsin, HR; chro 10.0 6E+02 0.02 19.5 6.0 21 148-169 197-217 (274)
No 1
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=100.00 E-value=6.7e-46 Score=297.60 Aligned_cols=167 Identities=26% Similarity=0.484 Sum_probs=155.9
Q ss_pred ChHHHHHHHHHHHHHHHhcc---------CCCCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-cChhhHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN---------YAEGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQK-KYVNGVIFW 68 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~---------~~~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~-~~~~~~~~~ 68 (172)
+||+++|++++++|+++|.. .++||| +.+.+|+. .+.+||++|++||+++.+|++++++ ||+++.+.+
T Consensus 88 ~SE~~~F~s~f~ayf~~~~~~~~~~~~~~g~~Wpp~g~~~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~ 167 (266)
T 1m56_C 88 MSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWG 167 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcchhhhcccCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48999999999999999874 345765 45566664 7899999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH
Q psy2389 69 LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLS 148 (172)
Q Consensus 69 L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 148 (172)
|..|+++|+.|+.+|.+||.+ +|+++++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|+++
T Consensus 168 L~~Ti~LG~~F~~lQ~~Ey~~---~~f~~~~~~ygS~ff~lTGfHglHViiG~i~l~v~~~r~~~~~~t~~~~~~~e~~a 244 (266)
T 1m56_C 168 LALAIALGALFTVFQAYEYSH---AAFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAI 244 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CSSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHH
Confidence 999999999999999999997 79999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcc
Q psy2389 149 MFWHFLDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 149 ~yWhfvd~vWl~~~~~~yl~~~ 170 (172)
+||||||++|+++|.++|++|.
T Consensus 245 ~YWHFVDvVWl~lf~~iY~~g~ 266 (266)
T 1m56_C 245 WYWHFVDVVWLFLFASIYIWGQ 266 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999873
No 2
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=100.00 E-value=2.4e-48 Score=301.39 Aligned_cols=171 Identities=50% Similarity=0.921 Sum_probs=162.5
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
+||+++|++++++|+++|...|++|++.+.++++.+.+||++|++||+++.+|++++++|++++.+.++..|+++|++|+
T Consensus 34 ~sE~~~F~~lf~ay~~~~~~~~~~p~~~~~~~~~~~~lnT~iLl~Ss~t~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl 113 (204)
T 1fft_C 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI 113 (204)
T ss_dssp HHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCchhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999988788887777788778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
++|.+||.++.++|++|++|+|+|.||++||+|++||++|++++.+++.|..+++++++++.++|++++||||||++|++
T Consensus 114 ~~q~~Ey~~~~~~g~~~~~~~ygS~ff~ltG~HglHV~~G~i~l~~~~~r~~~~~~~~~~~~~~e~~a~YWHFVDvvWl~ 193 (204)
T 1fft_C 114 GMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWIC 193 (204)
T ss_dssp HHHHHHHHHHHHSSCSCCCCSTTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q psy2389 161 IFTFIYLIGTL 171 (172)
Q Consensus 161 ~~~~~yl~~~~ 171 (172)
+|+++|++|.+
T Consensus 194 lf~~vYl~g~~ 204 (204)
T 1fft_C 194 VFTVVYLMGAM 204 (204)
T ss_dssp HCCCCCCCCC-
T ss_pred HHHHHHHHHhC
Confidence 99999998853
No 3
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=100.00 E-value=2.4e-45 Score=293.83 Aligned_cols=167 Identities=28% Similarity=0.481 Sum_probs=155.3
Q ss_pred ChHHHHHHHHHHHHHHHhcc-----CCCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN-----YAEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT 73 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~-----~~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~ 73 (172)
+||+++|++++++|++++.. .++||| +.+.+|+ ..+.+||++|++||.++.+|++++++||+++.+.+|..|+
T Consensus 88 ~SE~~~F~~~f~ayf~~~~~p~~~~g~~Wpp~g~~~~~~~~~pllnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~ 167 (261)
T 1v54_C 88 ISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITI 167 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhccCcCCCcccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48999999999999998864 246775 4445665 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389 74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF 153 (172)
Q Consensus 74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf 153 (172)
++|+.|+.+|.+||.+ +|++|++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|++++||||
T Consensus 168 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTGfHglHV~iG~i~l~~~~~r~~~~~~~~~~~~~~e~~a~YWHF 244 (261)
T 1v54_C 168 TLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHF 244 (261)
T ss_dssp HHHHHHHHHHHHHHHH---CSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---cCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHH
Confidence 9999999999999987 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2389 154 LDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~ 170 (172)
||++|+++|.++|++|.
T Consensus 245 VDvVWl~lf~~vY~~g~ 261 (261)
T 1v54_C 245 VDVVWLFLYVSIYWWGS 261 (261)
T ss_dssp HHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999873
No 4
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=100.00 E-value=9.6e-46 Score=297.56 Aligned_cols=167 Identities=26% Similarity=0.476 Sum_probs=155.8
Q ss_pred ChHHHHHHHHHHHHHHHhcc---------CCCCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHH-HhcChhhHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHN---------YAEGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQA-QKKYVNGVIFW 68 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~---------~~~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~-~~~~~~~~~~~ 68 (172)
+||+++|++++++|+++|.. .++||| +.+.+|+. .+.+||++|++||+++.+|++++ ++|++++.+.+
T Consensus 95 ~SEv~~F~s~f~ayf~~~~~~~~~~~~~~g~~WpP~g~~~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~ 174 (273)
T 1qle_C 95 MSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHHAFVLEGDRKTTING 174 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCTTTTTSCCCSSCTTCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48999999999999999874 345765 55667764 78999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH
Q psy2389 69 LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLS 148 (172)
Q Consensus 69 L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 148 (172)
|.+|+++|+.|+.+|.+||.+ +|+++++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|+++
T Consensus 175 L~~Ti~LG~~F~~lQ~~Ey~~---~~f~~~~~~ygS~ff~lTGfHglHViiG~i~l~v~l~r~~~~~~t~~~~~~~e~~a 251 (273)
T 1qle_C 175 LIVAVILGVCFTGLQAYEYSH---AAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAA 251 (273)
T ss_dssp THHHHTHHHHHHHHHHHHGGG---CSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHH
Confidence 999999999999999999987 79999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhcc
Q psy2389 149 MFWHFLDIIWIGIFTFIYLIGT 170 (172)
Q Consensus 149 ~yWhfvd~vWl~~~~~~yl~~~ 170 (172)
+||||||++|+++|.++|++|.
T Consensus 252 ~YWHFVDvVWl~lf~~vY~~g~ 273 (273)
T 1qle_C 252 WYWHFVDVVWLFLFVVIYIWGR 273 (273)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999873
No 5
>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-40 Score=298.90 Aligned_cols=166 Identities=30% Similarity=0.480 Sum_probs=155.8
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV 80 (172)
Q Consensus 1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl 80 (172)
+||+++|++++++|+++|...++||++.. +++..+.+||++|++||+++.+|++++++||+++.+.+|.+|+++|++|+
T Consensus 626 ~SE~~~F~~~f~ay~~~~~~~~~wpp~~i-~~~~~~llnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~ 704 (791)
T 2yev_A 626 VSEVGLFAILIAGYLYLRLSGAATPPEER-PALWLALLNTFLLVSSSFTVHFAHHDLRRGRFNPFRFGLLVTIILGVLFF 704 (791)
Confidence 48999999999999999988888986443 34467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG 160 (172)
Q Consensus 81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~ 160 (172)
++|.+||.++. +|+++++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|++++||||||++|++
T Consensus 705 ~lQ~~Ey~~~~-~~~~~~~~~ygS~ff~lTGfHglHViiG~i~l~v~~~r~~~~~~t~~~~~~~e~~a~YWHFVDvVWl~ 783 (791)
T 2yev_A 705 LVQSWEFYQFY-HHSSWQENLWTAAFFTIVGLHGLHVVIGGFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDAVWLV 783 (791)
Confidence 99999999965 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy2389 161 IFTFIYLI 168 (172)
Q Consensus 161 ~~~~~yl~ 168 (172)
+|.++|++
T Consensus 784 lf~~vYl~ 791 (791)
T 2yev_A 784 IVTIFYVW 791 (791)
Confidence 99999985
No 6
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=23.25 E-value=1.5e+02 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.770 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhc
Q psy2389 149 MFWHFLDIIWIGIFTFIYLIG 169 (172)
Q Consensus 149 ~yWhfvd~vWl~~~~~~yl~~ 169 (172)
...-++-+.|.+ |++.|.++
T Consensus 178 ~l~~~v~v~W~i-YPi~w~l~ 197 (253)
T 2ei4_A 178 TLTALVAVLWTA-YPILWIVG 197 (253)
T ss_dssp HHHHHHHHHHHH-HHHHHHHS
T ss_pred HHHHHHHHHHHH-HHHHHHhc
Confidence 334568889988 99999886
No 7
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=21.78 E-value=2.7e+02 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.716 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHhc
Q psy2389 148 SMFWHFLDIIWIGIFTFIYLIG 169 (172)
Q Consensus 148 ~~yWhfvd~vWl~~~~~~yl~~ 169 (172)
....-++-+.|.+ |++.|.++
T Consensus 185 ~~l~~~v~v~W~i-YPi~w~l~ 205 (262)
T 1m0k_A 185 KVLRNVTVVLWSA-YPVVWLIG 205 (262)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHS
T ss_pred HHHHHHHHHHHHH-HHHHHHhh
Confidence 3444568888988 99999887
No 8
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=19.93 E-value=73 Score=17.09 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhccCC
Q psy2389 154 LDIIWIGIFTFIYLIGTLS 172 (172)
Q Consensus 154 vd~vWl~~~~~~yl~~~~~ 172 (172)
+...++..|..++++|.+|
T Consensus 7 ~Vy~vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eehhHHHHHHHHHHccccC
Confidence 4556777777788887654
No 9
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=13.70 E-value=2e+02 Score=21.98 Aligned_cols=20 Identities=25% Similarity=1.037 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhc
Q psy2389 149 MFWHFLDIIWIGIFTFIYLIG 169 (172)
Q Consensus 149 ~yWhfvd~vWl~~~~~~yl~~ 169 (172)
...-++-+.|.. |++.|.++
T Consensus 167 ~l~~~v~v~W~i-YPI~w~l~ 186 (261)
T 1xio_A 167 KLVTYFTVLWIG-YPIVWIIG 186 (261)
T ss_dssp HHHHHHHHHHHH-HHHHHHHS
T ss_pred HHHHHHHHHHHH-HHHHHHhh
Confidence 334568889988 99999887
No 10
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=9.97 E-value=6e+02 Score=19.46 Aligned_cols=21 Identities=14% Similarity=0.803 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhc
Q psy2389 148 SMFWHFLDIIWIGIFTFIYLIG 169 (172)
Q Consensus 148 ~~yWhfvd~vWl~~~~~~yl~~ 169 (172)
....-++-+.|.+ |++.|.+|
T Consensus 197 ~~l~~~v~v~W~i-YPI~w~lg 217 (274)
T 2jaf_A 197 DTLRVLVVVLWLG-YPIVWAVG 217 (274)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHS
T ss_pred HHHHHHHHHHHHH-HHHHHHhc
Confidence 3344568899986 99999986
Done!