RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2389
(172 letters)
>gnl|CDD|131889 TIGR02842, CyoC, cytochrome o ubiquinol oxidase, subunit III.
Cytochrome o terminal oxidase complex is the component
of the aerobic respiratory chain which reacts with
oxygen, reducing it to water with the concomitant
transport of 4 protons across the membrane. Also known
as the cytochrome bo complex, cytochrome o ubiquinol
oxidase contains four subunits, two heme b cofactors and
a copper atom which is believed to be the oxygen active
site. This complex is structurally related to the
cytochrome caa3 oxidases which utilize cytochrome c as
the reductant and contain heme a cofactors, as well as
the intermediate form aa3 oxidases which also react
directly with quinones as the reductant [Energy
metabolism, Electron transport].
Length = 180
Score = 210 bits (538), Expect = 1e-70
Identities = 95/171 (55%), Positives = 126/171 (73%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++F++LFA YAVL +N A GP+ +IF LP V + T +LLLSS++ GFA++ KK
Sbjct: 10 MSDCILFATLFATYAVLSNNTAGGPSGKEIFDLPFVLVETFLLLLSSITFGFAMLAMNKK 69
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
VI WL+IT LLG F+ +E+ EF LI GP RSAFLS+FF LVG HGLH+ G
Sbjct: 70 NKKMVILWLAITFLLGLGFIGMEIYEFYHLIAEGNGPDRSAFLSAFFTLVGTHGLHVTSG 129
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+IW+I +I+Q+ KY L N+RR+ CLS+FWHFLDI+WI +FTF+YL+G L
Sbjct: 130 LIWIIVMIIQVYKYGLTKINRRRLACLSLFWHFLDIVWICVFTFVYLLGVL 180
>gnl|CDD|239214 cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III
subfamily. Ubiquinol oxidase, the terminal oxidase in
the respiratory chains of aerobic bacteria, is a
multi-chain transmembrane protein located in the cell
membrane. It catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane.
Ubiquinol oxidases feature four subunits in contrast to
the 13 subunit bovine cytochrome c oxidase (CcO).
Subunits I, II, and III of bovine CcO are encoded within
the mitochondrial genome and the remaining 10 subunits
are encoded within the nuclear genome. Subunits I, II
and III of ubiquinol oxidase are homologous to the
corresponding subunits in bovine CcO. Although not
required for catalytic activity, subunit III appears to
be involved in assembly of the multimer complex.
Length = 186
Score = 203 bits (519), Expect = 1e-67
Identities = 92/169 (54%), Positives = 120/169 (71%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++F++LFA YAVL N A GP ++F+LP V + T +LLLSS +CG A+I K
Sbjct: 18 MSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCGLAMIAMNKN 77
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
VI WL IT LLG FV +E+ EF LI GP RSAFLS+FF LVG HGLH+ FG
Sbjct: 78 NKKKVILWLIITFLLGLGFVGMEIYEFHHLIAEGAGPDRSAFLSAFFTLVGTHGLHVTFG 137
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
+IW++ +I+Q+KK L + RR+ CLS+FWHFLDI+WI +FT +YL+G
Sbjct: 138 LIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFTVVYLLG 186
>gnl|CDD|182628 PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III;
Provisional.
Length = 204
Score = 177 bits (450), Expect = 5e-57
Identities = 85/171 (49%), Positives = 116/171 (67%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
MSDC++FS LFA YAVL + A GPT IF+LP V + T +LL SS++ G A I K
Sbjct: 34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ VI WL++T L G F+ +E+ EF LI GP RS FLS+FF LVG HGLH+ G
Sbjct: 94 NKSQVISWLALTFLFGAGFIGMEIYEFHHLIVEGMGPDRSGFLSAFFALVGTHGLHVTSG 153
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
+IW+ L++Q+ + L N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204
>gnl|CDD|224758 COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit
3 [Energy production and conversion].
Length = 209
Score = 168 bits (427), Expect = 2e-53
Identities = 75/172 (43%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTA-IQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
MS+ +F+SLFA Y V + A P A ++F LP V +NT ILL SS +CG A+ ++
Sbjct: 40 MSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSSSFTCGLAVHALRR 99
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
G WL +T LLG FV +L E+ LI FG SAF S+FF+L G HGLH+ F
Sbjct: 100 GNRKGARAWLLLTLLLGAAFVGGQLYEYYHLIA--FGLTASAFGSAFFLLTGFHGLHVTF 157
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
G+IWL+ L+ +I + L N + S++WHF+D++WI +FT +YL G L
Sbjct: 158 GLIWLLVLLWRIARRGLTTRNHTGVEAASLYWHFVDVVWIFLFTLVYLWGAL 209
>gnl|CDD|131943 TIGR02897, QoxC, cytochrome aa3 quinol oxidase, subunit III. This
family (QoxC) encodes subunit III of the aa3-type
quinone oxidase, one of several bacterial terminal
oxidases. This complex couples oxidation of reduced
quinones with the reduction of molecular oxygen to water
and the pumping of protons to form a proton gradient
utilized for ATP production. aa3-type oxidases contain
two heme a cofactors as well as copper atoms in the
active site [Energy metabolism, Electron transport].
Length = 190
Score = 128 bits (322), Expect = 7e-38
Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Query: 6 IFSSLFAIYAVLGH-NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNG 64
+F++LFA Y VL H G ++F+LP V + T +LL SS +CG AI + +K+
Sbjct: 24 LFATLFATYLVLQHGGDYAGKMPAELFELPLVLIMTFLLLFSSFTCGIAIYEMRKENQKL 83
Query: 65 VIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWL 124
++FW+ IT LLG FV E+ EF + P ++ SSFFVL+G HG H+ GI+W
Sbjct: 84 MMFWMIITLLLGAGFVGFEIYEFAHYASEGVTPQIGSYWSSFFVLLGTHGCHVTLGIVWA 143
Query: 125 ITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
I L++QI++ L ++ +S++WHFLD++W+ IFT +YLIG
Sbjct: 144 ICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYLIG 188
>gnl|CDD|238227 cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxidase subunit III.
Heme-copper oxidases are transmembrane protein
complexes in the respiratory chains of prokaryotes and
mitochondria which couple the reduction of molecular
oxygen to water to, proton pumping across the membrane.
The heme-copper oxidase superfamily is diverse in terms
of electron donors, subunit composition, and heme types.
This superfamily includes cytochrome c and ubiquinol
oxidases. Bacterial oxidases typically contain 3 or 4
subunits in contrast to the 13 subunit bovine cytochrome
c oxidase (CcO). Subunits I, II, and III of mammalian
CcO are encoded within the mitochondrial genome and the
remaining 10 subunits are encoded within the nuclear
genome. Subunits I, II and III of ubiquinol oxidase are
homologous to the corresponding subunits in CcO. This
group additionally contains proteins which are fusions
between subunits I and III, such as Sulfolobus
acidocaldarius SoxM, a subunit of the SoxM terminal
oxidase complex. It also includes NorE which has been
speculated to be a subunit of nitric oxide reductase.
Some archaebacterial cytochrome oxidases lack subunit
III. Although not required for catalytic activity,
subunit III is believed to play a role in assembly of
the multimer complex. Rhodobacter CcO subunit III
stabilizes the integrity of the binuclear center in
subunit I. It has been proposed that archaea acquired
heme-copper oxidases through gene transfer from
gram-positive bacteria.
Length = 183
Score = 125 bits (316), Expect = 6e-37
Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGP-TAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
+S+ ++F S F Y + + LP + NT++L SS++ A + A++
Sbjct: 18 LSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARR 77
Query: 60 KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
WL +T LLG F+ L+ E+ LI F S F S+FF+L G HGLH+I
Sbjct: 78 GNRKKARLWLLLTILLGLAFLGLQAYEYSHLI---FTISDSVFGSTFFLLTGFHGLHVII 134
Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
G+I+L+ +++++++ + + + +++WHF+D++W+ +F +YL
Sbjct: 135 GLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWLFLFPLVYLW 183
>gnl|CDD|239213 cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase
subunit III. Heme-copper oxidases include cytochrome c
and ubiquinol oxidases. Alcaligenes faecalis norE is
found in a gene cluster containing norCB. norCB encodes
the cytochrome c and cytochrome b subunits of nitric
oxide reductase (NOR). Based on this and on its
similarity to subunit III of cytochrome c oxidase (CcO)
and ubiquinol oxidase, NorE has been speculated to be a
subunit of NOR.
Length = 186
Score = 87.7 bits (218), Expect = 3e-22
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 1/168 (0%)
Query: 2 SDCLIFSSLFAIYAVLGHNYAEG-PTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
S+ L F +LF YAV Y E L ALNT++LL SS + A+ A+
Sbjct: 19 SELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVRAARAG 78
Query: 61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
WL+ LLG F++++ E+ I P F + +F+L G H LH++ G
Sbjct: 79 RRRRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFLLTGFHLLHVLIG 138
Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
+ L+ + + ++ + + +++WH +D++WI +F +YL+
Sbjct: 139 LGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWIVLFPLLYLV 186
>gnl|CDD|238834 cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III.
Cytochrome c oxidase (CcO), the terminal oxidase in the
respiratory chains of eukaryotes and most bacteria, is a
multi-chain transmembrane protein located in the inner
membrane of mitochondria and the cell membrane of
prokaryotes. CcO catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane. The
number of subunits varies from three to five in bacteria
and up to 13 in mammalian mitochondria. Only subunits I
and II are essential for function, but subunit III,
which is also conserved, is believed to play a role in
assembly of the multimer complex. Rhodobacter CcO
subunit III stabilizes the integrity of the binuclear
center in subunit I. Subunits I, II, and III of
mammalian CcO are encoded within the mitochondrial
genome and the remaining 10 subunits are encoded within
the nuclear genome. Subunit III contains bound
phospholipids in several crystal structures and is
proposed to contain a "lipid pool." These phospholipids
are believed to intrinsic constituents similar to
cofactors of the enzyme.
Length = 243
Score = 76.4 bits (189), Expect = 2e-17
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
G + F +P LNTIILL S + +A I L +T LLG +F L+
Sbjct: 104 GIEPLNPFGIP--LLNTIILLSSGATVTWAHHALLLGNRKKAILGLILTILLGVYFTGLQ 161
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
E+ E +F S + S+FF+L G HGLH+I G I+L ++++ K + +
Sbjct: 162 AYEYYEA---SFTISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLG 218
Query: 144 IICLSMFWHFLDIIWIGIFTFIY 166
+WHF+D++W+ +F F+Y
Sbjct: 219 FEAAIWYWHFVDVVWLFLFVFVY 241
>gnl|CDD|177199 MTH00141, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 259
Score = 69.9 bits (172), Expect = 6e-15
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNT +LL S ++ +A + + L +T +LG +F L+ E+ E +F
Sbjct: 130 LNTAVLLASGVTVTWAHHSLMEGDYKSALQGLGLTIILGVYFTFLQAGEYYEA---SFSI 186
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
+ S+FFVL G HGLH+I G +L+ ++++ + + + +WHF+D++
Sbjct: 187 ADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHFVDVV 246
Query: 158 WIGIFTFIYLIG 169
W+ ++ IY G
Sbjct: 247 WLFLYLSIYWWG 258
>gnl|CDD|239215 cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III
subfamily. Heme-copper oxidases are transmembrane
protein complexes in the respiratory chains of
prokaryotes and mitochondria which couple the reduction
of molecular oxygen to water to, proton pumping across
the membrane. The heme-copper oxidase superfamily is
diverse in terms of electron donors, subunit
composition, and heme types. This superfamily includes
cytochrome c and ubiquinol oxidases. Bacterial oxidases
typically contain 3 or 4 subunits in contrast to the 13
subunit bovine cytochrome c oxidase (CcO). Subunits I,
II, and III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunits I, II and
III of ubiquinol oxidase are homologous to the
corresponding subunits in CcO. Although not required
for catalytic activity, subunit III is believed to play
a role in assembly of the multimer complex. Rhodobacter
CcO subunit III stabilizes the integrity of the
binuclear center in subunit I. It has been proposed
that Archaea acquired heme-copper oxidases through gene
transfer from Gram-positive bacteria.
Length = 202
Score = 67.9 bits (166), Expect = 1e-14
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFK----------LPSVALNTIILLLSSLSC 50
+SD IFSS Y + E L +A+ T IL+ SS +
Sbjct: 18 LSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFILITSSGTM 77
Query: 51 GFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELI-NRNFGPWRSA-----FLS 104
A+ + + T LLG FV ++ E+ +LI PW + F +
Sbjct: 78 AMAVNFGYRGNRKAAARLMLATALLGATFVGMQAFEWTKLIVEEGVRPWGNPWGAAQFGA 137
Query: 105 SFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRII-CLSMFWHFLDIIWIGIFT 163
SFF++ G HG H+ G+I+LI + ++ + + I+ ++WHF+D++W+ IF
Sbjct: 138 SFFMITGFHGTHVTIGVIYLIIIARKVWRGKYQRIGRYEIVEIAGLYWHFVDLVWVFIFA 197
Query: 164 FIYL 167
F YL
Sbjct: 198 FFYL 201
>gnl|CDD|215961 pfam00510, COX3, Cytochrome c oxidase subunit III.
Length = 258
Score = 68.1 bits (167), Expect = 2e-14
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNTIILL S ++ +A G + L +T LL +F L+ E F
Sbjct: 129 LNTIILLSSGVTVTWAHHSLISGNRKGALQGLFLTILLAVYFTGLQA---YEYYEAPFTI 185
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
+ S+FF+ G HGLH+I G I+L+ +L++ Y+ + +WHF+D++
Sbjct: 186 SDGVYGSTFFMATGFHGLHVIIGTIFLLVCLLRLLNYHFTSNHHFGFEAAIWYWHFVDVV 245
Query: 158 WIGIFTFIYLIG 169
W+ ++ IY G
Sbjct: 246 WLFLYVSIYWWG 257
>gnl|CDD|239216 cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III
subfamily. Heme-copper oxidases are transmembrane
protein complexes in the respiratory chains of
prokaryotes and mitochondria which couple the reduction
of molecular oxygen to water to, proton pumping across
the membrane. The heme-copper oxidase superfamily is
diverse in terms of electron donors, subunit
composition, and heme types. This superfamily includes
cytochrome c and ubiquinol oxidases. Bacterial oxidases
typically contain 3 or 4 subunits in contrast to the 13
subunit bovine cytochrome c oxidase (CcO). Subunits I,
II, and III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunits I, II and
III of ubiquinol oxidase are homologous to the
corresponding subunits in CcO. Although not required
for catalytic activity, subunit III is believed to play
a role in assembly of the multimer complex. Rhodobacter
CcO subunit III stabilizes the integrity of the
binuclear center in subunit I. It has been proposed
that Archaea acquired heme-copper oxidases through gene
transfer from Gram-positive bacteria.
Length = 184
Score = 64.7 bits (158), Expect = 2e-13
Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
Query: 7 FSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVI 66
F+ L + Y + + P A + ++LNT +L SS++ +A A++
Sbjct: 24 FALLISAYFMRMTSGDWQPGA-PLPLPNLLSLNTAVLAASSVAMQWARRAARRNRRVLAR 82
Query: 67 FWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLIT 126
L++ L F+ +L + L + +GP + S F++L G+HGLH+I G++ L
Sbjct: 83 LGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAI 142
Query: 127 LILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIY 166
++ + + + + + +++WHFL ++W+ + +Y
Sbjct: 143 VLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLVLLALLY 182
>gnl|CDD|177179 MTH00118, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 261
Score = 65.0 bits (159), Expect = 3e-13
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 38 LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
LNT +LL S ++ +A I++ +K I L++T LLG +F L+ E+ E
Sbjct: 132 LNTAVLLASGVTVTWAHHSIMEGNRK---QAIQALTLTILLGLYFTALQAMEYYE---AP 185
Query: 95 FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
F S + S+FFV G HGLH+I G +LI +L++ K++ + + +WHF+
Sbjct: 186 FTISDSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHFTTNHHFGFEAAAWYWHFV 245
Query: 155 DIIWIGIFTFIYLIGT 170
D++W+ ++ IY G+
Sbjct: 246 DVVWLFLYISIYWWGS 261
>gnl|CDD|177238 MTH00189, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 260
Score = 64.6 bits (158), Expect = 4e-13
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNT +LL S ++ +A + I L++T +LG +F +L+ E+ E F
Sbjct: 131 LNTAVLLSSGVTVTWAHHSLMEGNRKEAIQALTLTVILGVYFTLLQAMEYYE---APFTI 187
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
S + S+FFV G HGLH+I G +L+ +L+ + + + + +WHF+D++
Sbjct: 188 ADSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHFVDVV 247
Query: 158 WIGIFTFIY 166
W+ ++ IY
Sbjct: 248 WLFLYVSIY 256
>gnl|CDD|177188 MTH00130, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 261
Score = 63.6 bits (155), Expect = 1e-12
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I++ ++K I L++T LLGF+F
Sbjct: 120 GITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQA---IQSLTLTILLGFYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+ E F + S+FFV G HGLH+I G +L +L+ +Y+ E+
Sbjct: 175 FLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYISIYWWGS 261
>gnl|CDD|214403 MTH00024, COX3, cytochrome c oxidase subunit III; Validated.
Length = 261
Score = 61.7 bits (150), Expect = 6e-12
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 38 LNTIILLLSSLS---CGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
LNT +LL S + AII ++K I L +T LG F L+ E+ E
Sbjct: 132 LNTAVLLSSGATVTWAHHAIISGKRKEA---ILGLFLTVFLGVLFTGLQAIEYYE---AP 185
Query: 95 FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
F S + S+FFV G HGLH+I G +L +L++ S +WHF+
Sbjct: 186 FAISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHFV 245
Query: 155 DIIWIGIFTFIYLIGT 170
D++W+ ++ IY G+
Sbjct: 246 DVVWLFLYLCIYWWGS 261
>gnl|CDD|177146 MTH00075, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 261
Score = 61.7 bits (150), Expect = 6e-12
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 11/150 (7%)
Query: 24 GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
G T + F++P LNT +LL S ++ +A I+Q +K I L++T +LG +F
Sbjct: 120 GITPLDPFEVP--LLNTAVLLASGVTVTWAHHSIMQGNRK---EAIQSLALTIILGLYFT 174
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
+L+ E+ E F + S+FFV G HGLH+I G ++L+ +L+ ++ ++
Sbjct: 175 LLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFHFTSQH 231
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++W+ ++ IY G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
>gnl|CDD|177114 MTH00039, COX3, cytochrome c oxidase subunit III; Validated.
Length = 260
Score = 61.3 bits (149), Expect = 7e-12
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNT +LL S ++ ++ + I L +T LLG +F L+ E+ + F
Sbjct: 131 LNTAVLLSSGVTITWSHHSILEGNRTEAIQALFLTVLLGLYFTALQAWEYYD---APFTI 187
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
S + S+FFV G HGLH+I G +L + ++ ++ + + +WHF+D++
Sbjct: 188 ADSVYGSTFFVATGFHGLHVIIGTTFLAVCLFRLINHHFSNNHHFGFEAAAWYWHFVDVV 247
Query: 158 WIGIFTFIYLIG 169
W+ ++ IY G
Sbjct: 248 WLFLYVCIYWWG 259
>gnl|CDD|214439 MTH00155, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 255
Score = 61.0 bits (149), Expect = 1e-11
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNTIILL S ++ +A + L T +LG +F +L+ E+ E F
Sbjct: 130 LNTIILLSSGVTVTWAHHSLMENNYKQATQSLFFTIILGIYFTMLQAYEYYEA---PFTI 186
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
S + S+FF+ G HGLH+I G +L+ +++ + + + +WHF+D++
Sbjct: 187 ADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFGFEAAAWYWHFVDVV 246
Query: 158 WIGIFTFIY 166
W+ ++ IY
Sbjct: 247 WLFLYISIY 255
>gnl|CDD|177161 MTH00099, COX3, cytochrome c oxidase subunit III; Validated.
Length = 261
Score = 60.1 bits (146), Expect = 2e-11
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNT +LL S +S +A + ++ L IT LLG +F +L+ +E+ E F
Sbjct: 132 LNTSVLLASGVSITWAHHSLMEGNRKHMLQALFITILLGLYFTLLQASEYYE---APFTI 188
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
+ S+FF+ G HGLH+I G +LI L+ K++ + + +WHF+D++
Sbjct: 189 SDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHFVDVV 248
Query: 158 WIGIFTFIYLIGT 170
W+ ++ IY G+
Sbjct: 249 WLFLYVSIYWWGS 261
>gnl|CDD|214464 MTH00219, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 262
Score = 58.3 bits (141), Expect = 9e-11
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
LNT +LL S ++ +A + L T LLG +F +L+ E++E +F
Sbjct: 133 LNTAVLLASGVTVTWAHHSLMESNHKEAQQGLLFTILLGLYFTMLQGMEYLE---ASFSI 189
Query: 98 WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
S + ++FFV G HGLH+I G I+L ++ + + + +WHF+D++
Sbjct: 190 SDSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHFVDVV 249
Query: 158 WIGIFTFIYLIGT 170
W+ ++ IY G+
Sbjct: 250 WLFLYVSIYWWGS 262
>gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated.
Length = 259
Score = 57.5 bits (139), Expect = 2e-10
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 25 PTAIQIFKLPSVAL-NTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
PT I+ SV L NT +LL S ++ +A +I+ + L +T LLG +F
Sbjct: 116 PTGIEPLNPFSVPLLNTAVLLASGVTVTWAHHSLIEGDRP---EATQALILTVLLGAYFT 172
Query: 81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
L+ E+IE F S + S+FFV G HGLH++ G +L +L+ ++ +
Sbjct: 173 FLQAGEYIE---APFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGH 229
Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+ +WHF+D++WI ++ IY G+
Sbjct: 230 HFGFEAAAWYWHFVDVVWIFLYLCIYWWGS 259
>gnl|CDD|164623 MTH00052, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 262
Score = 57.1 bits (138), Expect = 2e-10
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 38 LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
LNT +LL S + +A II ++K I L++T LG F L+ E+ E
Sbjct: 133 LNTAVLLSSGATVTWAHHGIISGKRKEA---IIGLALTVALGLLFTGLQAMEYYE---AP 186
Query: 95 FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
F S + S+FFV G HG H++ G +L+ + ++ + + + +WHF+
Sbjct: 187 FTISDSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRHHHFGFEAAAWYWHFV 246
Query: 155 DIIWIGIFTFIYLIGT 170
D++W+ +F F+Y G+
Sbjct: 247 DVVWLFLFIFMYWWGS 262
>gnl|CDD|214406 MTH00028, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 297
Score = 53.1 bits (127), Expect = 7e-09
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 69 LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLI 128
L +T LLG F L+ E+ E +F S + S+FF+L G HGLH++ G +LI
Sbjct: 199 LLMTILLGIIFTGLQAFEYKE---ASFAISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCF 255
Query: 129 LQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
+++ + + +WHF+D++W+ ++ F+Y G+
Sbjct: 256 IRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWWGS 297
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 51.1 bits (123), Expect = 3e-08
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 38 LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
LNTIILL S +S ++ + + K N ++ T LG +F +L E+ E +
Sbjct: 128 LNTIILLSSGVSVTWSHHSLCLSNKSCTNSLLL----TCFLGLYFTSFQLMEYKEA---S 180
Query: 95 FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
F S + S F++ G HG+H++ G ++L+ +L++ K + + + ++WHF+
Sbjct: 181 FSISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHFV 240
Query: 155 DIIWIGIFTFIY 166
D++W+ +F F+Y
Sbjct: 241 DVVWLFLFVFVY 252
>gnl|CDD|177845 PLN02194, PLN02194, cytochrome-c oxidase.
Length = 265
Score = 47.0 bits (111), Expect = 1e-06
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 38 LNTIILLLSSLSCGFAIIQAQKKYVNG----VIFWLSITTLLGFFFVILELNEFIELINR 93
LNT IL S G A+ A + G ++ L T LL F + E+ +
Sbjct: 135 LNTPILP----SSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQ---A 187
Query: 94 NFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKY--NLILENQRRIICLSMFW 151
F S + S+FF+ G HG H+I G ++LI I I++Y +L E+ + +W
Sbjct: 188 PFTISDSIYGSTFFLATGFHGFHVIIGTLFLI--ICGIRQYLGHLTKEHHVGFEAAAWYW 245
Query: 152 HFLDIIWIGIFTFIYLIG 169
HF+D++W+ +F IY G
Sbjct: 246 HFVDVVWLFLFVSIYWWG 263
>gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated.
Length = 215
Score = 45.3 bits (108), Expect = 2e-06
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 67 FWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLIT 126
+L +T LLG FV+L++ EF E S++ +S F VG+H H++ G++ L T
Sbjct: 121 LFLYLTILLGLLFVVLQVFEFEES---GVNSLDSSYYASCFCTVGLHFSHVVLGVVGLST 177
Query: 127 LILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYL 167
L+L R L+ +WHF+D IW+ ++ +Y+
Sbjct: 178 LLL----VGSSSFGVYRSTVLTWYWHFVDYIWLLVYLIVYV 214
>gnl|CDD|226457 COG3948, COG3948, Phage-related baseplate assembly protein [General
function prediction only].
Length = 306
Score = 29.8 bits (67), Expect = 0.59
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 99 RSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
+ F+ L + IT +LQ Y ++ QR
Sbjct: 32 LADFVDLLPEDERDARLPTLALESDPITKLLQEAAYRELVLRQRI 76
>gnl|CDD|225146 COG2237, COG2237, Predicted membrane protein [Function unknown].
Length = 364
Score = 29.2 bits (66), Expect = 0.97
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 25/143 (17%)
Query: 5 LIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNG 64
SSL + A AI F L S T+ +L + + F +I K +
Sbjct: 239 GGASSLTIALSS----SAGALLAISTFILYSTWWFTLAILTTMVGIFFDLIIGGKVRIEY 294
Query: 65 V---IFWLSIT-TLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
+ F+L I + G F ILEL L S S L + G
Sbjct: 295 LKISFFYLIIAFLVYGAFGYILELLTIYSL---------SPEQPSALFL--------VAG 337
Query: 121 IIWLITLILQIKKYNLILENQRR 143
+I + +IL I ++L E+ +
Sbjct: 338 VIISVIIILAIIYFSLKSEDLVK 360
>gnl|CDD|151690 pfam11248, DUF3046, Protein of unknown function (DUF3046). This
family of proteins with unknown function appears to be
restricted to Actinobacteria.
Length = 63
Score = 26.9 bits (60), Expect = 1.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 84 LNEFIELINRNFGPWRSAFLSSFFVLVGMHG 114
L EF +L+ FG A L+ VL + G
Sbjct: 3 LTEFWQLMEDEFGAAYGASLARDHVLSELGG 33
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 28.4 bits (64), Expect = 2.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 36 VALNTIILLLSSLSCGFA-IIQAQKKYVNGVIFWLSITTLLGFFFVIL 82
V + + LL+S+S II+ +++V+ +F T+L F + L
Sbjct: 18 VGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPDTSLAWAFVLAL 65
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 28.3 bits (63), Expect = 2.7
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 59 KKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP-----WRSAFLSSFFVLVGMH 113
K V ++ + I L F + E IE IN+ F +F
Sbjct: 10 KFIVIAIVIVVLILIFLCFDLQ--NIQEIIEQINQLTNNSGMRKKIIFFTFNFLGK---- 63
Query: 114 GLHIIFGIIWLITLILQIKKYNLILENQRRI 144
I I +I+ +L IKK I Q ++
Sbjct: 64 ----IILAILIISFLLNIKKNAQIKRLQNKL 90
>gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated.
Length = 205
Score = 27.1 bits (60), Expect = 4.8
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 30 IFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIF---WLSITTLLGFFFVIL 82
+FKL ++ + +I+ L +SC + + + K + +F W+ I L+ F ++L
Sbjct: 8 VFKLLLLSFSFLIISLFLVSCTENVEELKSKSIINELFPNFWVFIAHLIAFSILLL 63
>gnl|CDD|220531 pfam10032, Pho88, Phosphate transport (Pho88). Members of this
family of proteins are involved in regulating inorganic
phosphate transport, as well as telomere length
regulation and maintenance.
Length = 192
Score = 26.9 bits (60), Expect = 4.8
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 95 FGPWRSAFLSSFFVLVGMHGLHIIFGII 122
R F S + M +H+
Sbjct: 90 LQQLRKLFKSILMGVAMMGFMHLYMKYT 117
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 26.7 bits (60), Expect = 5.8
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 107 FVLVGMH-GLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFI 165
G GL + L+ L + + LI ++ R C F FL+ W+G+ F
Sbjct: 221 LAWAGWLLGLGWAYYWGLLVAAALFVYQQKLI-RDREREAC---FKAFLNNNWVGLVLFA 276
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 27.0 bits (60), Expect = 5.9
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 75 LGFFFVILELNEFIELINR---NFGPWRSAFLSSFFVLVGM 112
LG FF + LNE EL +R + P R AF FFV VGM
Sbjct: 252 LGAFFAGMVLNE-SELSHRAAHDTLPLRDAFAVLFFVSVGM 291
>gnl|CDD|224588 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 26.7 bits (59), Expect = 7.8
Identities = 17/152 (11%), Positives = 35/152 (23%), Gaps = 16/152 (10%)
Query: 31 FKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIEL 90
+ L + + I V I + ++ + I L
Sbjct: 25 YLRYLDVLRDEVTASAEAQRASLNIHHPDPAVLKSIVGI-LSQRIWERKFNDPDFLLIRL 83
Query: 91 INRNFGPWRSAF---------LSSFFVLVGMHGLH-IIFGIIWLITLILQIKK-----YN 135
G ++F VL + I + + +
Sbjct: 84 GVGIRGNPATSFELNAKSYEFPRLEPVLHEALRKFLREYRSIEDAPKGVDLLEVPGIAVL 143
Query: 136 LILENQRRIICLSMFWHFLDIIWIGIFTFIYL 167
+L R +I +H D + + T
Sbjct: 144 GVLGLLRAMIGQLALFHSPDDLGQALITRESE 175
>gnl|CDD|222686 pfam14331, ImcF-related_N, ImcF-related N-terminal domain. This
domain is found in bacterial ImcF (intracellular
multiplication and human macrophage-killing) proteins.
It is found to the N-terminus of the ImcF-related
domain, pfam06761.
Length = 264
Score = 26.4 bits (59), Expect = 8.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 62 VNGVIFWLSITTLLG 76
+NGVI +S+ LL
Sbjct: 26 LNGVILTVSLEDLLT 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.336 0.149 0.476
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,157,581
Number of extensions: 894138
Number of successful extensions: 2446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2335
Number of HSP's successfully gapped: 354
Length of query: 172
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 82
Effective length of database: 6,945,742
Effective search space: 569550844
Effective search space used: 569550844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (24.9 bits)