RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2389
         (172 letters)



>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III
           {Escherichia coli [TaxId: 562]}
          Length = 185

 Score =  101 bits (253), Expect = 3e-28
 Identities = 86/169 (50%), Positives = 115/169 (68%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 16  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 75

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 76  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 135

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
           +IW+  L++QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G
Sbjct: 136 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMG 184


>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit
           III {Cow (Bos taurus) [TaxId: 9913]}
          Length = 259

 Score = 82.8 bits (204), Expect = 2e-20
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 4   CLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVN 63
               SSL     + G     G   +   ++P   LNT +LL S +S  +A     +    
Sbjct: 98  AFYHSSLAPTPELGGCWPPTGIHPLNPLEVP--LLNTSVLLASGVSITWAHHSLMEGDRK 155

Query: 64  GVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIW 123
            ++  L IT  LG +F +L+ +E+ E     F      + S+FFV  G HGLH+I G  +
Sbjct: 156 HMLQALFITITLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTF 212

Query: 124 LITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
           LI    +  K++    +       + +WHF+D++W+ ++  IY  G+
Sbjct: 213 LIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 259


>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase
           subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 265

 Score = 73.6 bits (180), Expect = 5e-17
 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 13/180 (7%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTA-----------IQIFKLPSVALNTIILLLSSLS 49
           MS+ + FS+ F  +           +            I         +NT+ILL S  +
Sbjct: 87  MSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCA 146

Query: 50  CGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVL 109
             +A      +     + W     +       +   +  E  +  FG   + + ++FF+ 
Sbjct: 147 ATWAHHALVHENNRRDVAWGLALAIALGALFTV--FQAYEYSHAAFGFAGNIYGANFFMA 204

Query: 110 VGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
            G HG H+I G I+L+  ++++++ +   E          +WHF+D++W+ +F  IY+ G
Sbjct: 205 TGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWG 264


>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 500

 Score = 25.7 bits (56), Expect = 4.0
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 115 LHIIFGIIWLITLILQIKKYNL 136
            H++ G+I  +  I  +   NL
Sbjct: 102 PHLVLGLISQLIKIQLLADLNL 123


>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase
           {Cow (Bos taurus), alpha2 [TaxId: 9913]}
          Length = 212

 Score = 25.3 bits (54), Expect = 4.5
 Identities = 12/107 (11%), Positives = 36/107 (33%)

Query: 56  QAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGL 115
             + K  + +    S+  L+  + +  EL   +  +N   G   +  +        +  +
Sbjct: 29  DCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELENI 88

Query: 116 HIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIF 162
                ++W+ T   +     +    +  +  ++       II +G+ 
Sbjct: 89  KPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLL 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.149    0.476 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 663,861
Number of extensions: 28681
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 23
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.3 bits)