Query psy2391
Match_columns 642
No_of_seqs 254 out of 1750
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:48:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0326 HtpG Molecular chapero 100.0 5E-158 1E-162 1294.5 57.7 614 12-640 3-619 (623)
2 PTZ00130 heat shock protein 90 100.0 5E-155 1E-159 1311.2 60.7 616 12-640 64-753 (814)
3 PTZ00272 heat shock protein 83 100.0 1E-152 3E-157 1293.8 59.8 613 14-640 3-665 (701)
4 KOG0019|consensus 100.0 3E-149 6E-154 1199.7 46.1 597 13-641 34-643 (656)
5 KOG0020|consensus 100.0 2E-147 5E-152 1150.6 36.5 616 11-641 70-742 (785)
6 PRK05218 heat shock protein 90 100.0 1E-139 3E-144 1187.9 62.1 607 12-641 2-610 (613)
7 PRK14083 HSP90 family protein; 100.0 1E-125 3E-130 1063.2 54.4 562 15-641 2-591 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 5E-112 1E-116 943.7 40.5 438 195-641 1-493 (531)
9 COG0323 MutL DNA mismatch repa 99.9 2.2E-27 4.9E-32 270.8 16.1 287 22-377 4-333 (638)
10 PRK00095 mutL DNA mismatch rep 99.9 8E-22 1.7E-26 226.0 20.9 254 32-349 18-299 (617)
11 TIGR00585 mutl DNA mismatch re 99.9 2.4E-21 5.1E-26 205.4 20.0 256 31-349 17-305 (312)
12 KOG1979|consensus 99.7 3.2E-17 6.9E-22 177.4 11.9 285 22-370 8-336 (694)
13 PF13589 HATPase_c_3: Histidin 99.7 1.7E-16 3.8E-21 148.4 9.9 103 34-165 1-105 (137)
14 KOG1978|consensus 99.5 9.3E-14 2E-18 154.4 15.6 275 28-371 12-318 (672)
15 PRK14867 DNA topoisomerase VI 99.3 1.2E-11 2.6E-16 140.5 14.0 243 39-341 39-306 (659)
16 PRK14868 DNA topoisomerase VI 99.3 8E-12 1.7E-16 142.2 11.8 150 39-219 49-214 (795)
17 COG1389 DNA topoisomerase VI, 99.3 2.1E-11 4.5E-16 130.1 13.4 152 34-210 30-200 (538)
18 PRK04184 DNA topoisomerase VI 99.2 7.2E-11 1.6E-15 132.0 14.3 160 34-220 30-209 (535)
19 TIGR01052 top6b DNA topoisomer 99.2 8.4E-11 1.8E-15 130.1 13.8 155 39-221 31-201 (488)
20 PRK05559 DNA topoisomerase IV 99.0 6.6E-09 1.4E-13 119.8 16.6 155 37-219 38-206 (631)
21 smart00433 TOP2c Topoisomerase 99.0 5.5E-09 1.2E-13 119.9 14.9 152 40-221 5-172 (594)
22 TIGR01055 parE_Gneg DNA topois 99.0 1E-08 2.2E-13 118.0 16.9 152 36-220 30-200 (625)
23 TIGR01059 gyrB DNA gyrase, B s 98.8 1.5E-07 3.3E-12 109.3 18.1 156 38-221 32-199 (654)
24 PRK05644 gyrB DNA gyrase subun 98.7 4E-07 8.7E-12 105.2 17.8 154 38-220 39-205 (638)
25 PRK14939 gyrB DNA gyrase subun 98.5 3.1E-07 6.7E-12 107.0 8.6 150 38-220 39-205 (756)
26 PF02518 HATPase_c: Histidine 98.4 3.7E-07 8.1E-12 81.4 6.3 81 38-145 7-87 (111)
27 KOG1977|consensus 98.2 2.2E-06 4.7E-11 95.8 8.1 155 36-222 21-192 (1142)
28 cd00075 HATPase_c Histidine ki 97.5 0.00073 1.6E-08 57.1 8.9 86 39-151 3-92 (103)
29 TIGR01058 parE_Gpos DNA topois 97.4 0.00029 6.3E-09 81.6 7.6 154 38-219 36-202 (637)
30 PRK10755 sensor protein BasS/P 97.2 0.00052 1.1E-08 73.7 6.8 75 39-143 250-324 (356)
31 TIGR02938 nifL_nitrog nitrogen 97.2 0.0012 2.5E-08 73.1 8.7 77 39-142 390-468 (494)
32 PRK11100 sensory histidine kin 97.1 0.0017 3.6E-08 71.9 9.4 77 39-142 371-447 (475)
33 PRK10604 sensor protein RstB; 97.1 0.00086 1.9E-08 74.4 6.8 76 39-142 322-397 (433)
34 PRK11006 phoR phosphate regulo 97.1 0.0011 2.5E-08 73.2 7.7 78 39-142 320-397 (430)
35 cd03483 MutL_Trans_MLH1 MutL_T 97.1 0.00058 1.3E-08 63.1 4.5 99 258-368 4-124 (127)
36 TIGR02916 PEP_his_kin putative 97.1 0.00093 2E-08 78.6 7.3 73 39-142 582-654 (679)
37 PRK10549 signal transduction h 97.1 0.0012 2.6E-08 73.2 7.8 79 39-143 355-433 (466)
38 cd03482 MutL_Trans_MutL MutL_T 97.0 0.00047 1E-08 63.4 2.9 97 259-367 4-119 (123)
39 TIGR01386 cztS_silS_copS heavy 97.0 0.0018 3.9E-08 71.3 8.0 78 39-142 356-433 (457)
40 PRK09303 adaptive-response sen 96.9 0.0022 4.8E-08 70.0 8.1 80 33-142 266-351 (380)
41 smart00387 HATPase_c Histidine 96.9 0.0011 2.4E-08 56.9 4.6 80 39-145 8-87 (111)
42 COG0187 GyrB Type IIA topoisom 96.9 0.0011 2.4E-08 74.9 5.1 154 37-219 37-205 (635)
43 PF01119 DNA_mis_repair: DNA m 96.8 0.00094 2E-08 60.9 3.6 88 271-367 9-115 (119)
44 PRK10815 sensor protein PhoQ; 96.8 0.0028 6.2E-08 71.6 7.8 99 39-192 381-479 (485)
45 PLN03237 DNA topoisomerase 2; 96.8 0.0048 1E-07 76.3 9.9 157 38-219 79-254 (1465)
46 PRK11086 sensory histidine kin 96.8 0.0036 7.9E-08 70.7 8.4 52 39-104 436-489 (542)
47 TIGR02956 TMAO_torS TMAO reduc 96.8 0.0046 9.9E-08 75.4 9.6 85 39-152 582-671 (968)
48 PRK15347 two component system 96.7 0.0034 7.3E-08 76.1 8.1 73 39-142 516-588 (921)
49 TIGR02966 phoR_proteo phosphat 96.7 0.0033 7.2E-08 65.6 6.8 75 40-142 233-309 (333)
50 PRK15053 dpiB sensor histidine 96.7 0.0042 9.1E-08 70.7 8.1 77 40-143 436-514 (545)
51 PRK10364 sensor protein ZraS; 96.7 0.0044 9.5E-08 69.1 8.0 51 39-103 351-401 (457)
52 PLN03128 DNA topoisomerase 2; 96.7 0.0045 9.7E-08 75.8 8.5 158 38-219 54-229 (1135)
53 PTZ00108 DNA topoisomerase 2-l 96.6 0.0046 1E-07 76.6 8.2 153 38-210 59-228 (1388)
54 PRK09467 envZ osmolarity senso 96.6 0.0045 9.8E-08 68.1 7.4 73 40-142 335-407 (435)
55 PRK11466 hybrid sensory histid 96.6 0.0055 1.2E-07 74.3 8.8 83 39-152 564-650 (914)
56 cd03485 MutL_Trans_hPMS_1_like 96.6 0.0029 6.2E-08 58.9 4.7 100 258-366 4-127 (132)
57 PRK11091 aerobic respiration c 96.5 0.0086 1.9E-07 71.5 9.6 88 39-152 401-493 (779)
58 PRK10337 sensor protein QseC; 96.4 0.0075 1.6E-07 66.7 7.9 70 40-142 356-425 (449)
59 PRK13837 two-component VirA-li 96.4 0.0071 1.5E-07 72.9 7.9 82 39-152 563-663 (828)
60 PRK11360 sensory histidine kin 96.4 0.007 1.5E-07 68.6 7.4 51 39-103 503-554 (607)
61 PRK09470 cpxA two-component se 96.3 0.012 2.7E-07 64.9 8.9 75 39-141 356-430 (461)
62 PRK10490 sensor protein KdpD; 96.3 0.0081 1.8E-07 73.0 7.7 76 39-142 781-856 (895)
63 cd00782 MutL_Trans MutL_Trans: 96.2 0.0035 7.6E-08 57.2 3.2 97 259-367 4-119 (122)
64 cd03484 MutL_Trans_hPMS_2_like 96.2 0.0048 1E-07 58.2 4.0 61 284-350 43-116 (142)
65 PRK10618 phosphotransfer inter 96.2 0.013 2.9E-07 70.9 8.7 86 39-152 568-660 (894)
66 PHA02569 39 DNA topoisomerase 96.2 0.0036 7.9E-08 72.2 3.7 154 39-219 48-218 (602)
67 cd03486 MutL_Trans_MLH3 MutL_T 96.1 0.0055 1.2E-07 57.7 4.1 95 259-367 5-137 (141)
68 PRK11107 hybrid sensory histid 96.0 0.019 4.1E-07 69.5 8.7 87 39-152 411-506 (919)
69 PRK04069 serine-protein kinase 95.9 0.0074 1.6E-07 58.0 4.0 88 38-150 44-131 (161)
70 PRK10841 hybrid sensory kinase 95.9 0.021 4.5E-07 69.8 8.4 77 39-142 565-641 (924)
71 PTZ00109 DNA gyrase subunit b; 95.8 0.0098 2.1E-07 70.4 5.2 162 38-220 131-353 (903)
72 TIGR01925 spIIAB anti-sigma F 95.6 0.057 1.2E-06 49.8 8.4 47 38-95 41-87 (137)
73 COG4191 Signal transduction hi 95.6 0.018 3.8E-07 65.0 5.6 57 39-109 500-558 (603)
74 TIGR03785 marine_sort_HK prote 95.5 0.028 6.1E-07 66.6 7.3 79 39-143 600-678 (703)
75 COG0642 BaeS Signal transducti 95.4 0.018 4E-07 59.1 5.0 48 39-103 231-280 (336)
76 PRK09959 hybrid sensory histid 95.4 0.036 7.9E-07 69.4 8.3 75 39-142 831-910 (1197)
77 COG3290 CitA Signal transducti 95.4 0.032 7E-07 62.5 6.9 73 39-141 430-504 (537)
78 TIGR01924 rsbW_low_gc serine-p 95.3 0.034 7.4E-07 53.3 5.8 88 38-150 44-131 (159)
79 PRK03660 anti-sigma F factor; 94.8 0.15 3.1E-06 47.6 8.7 48 38-96 41-88 (146)
80 PF13581 HATPase_c_2: Histidin 94.7 0.06 1.3E-06 48.8 5.6 81 38-148 33-113 (125)
81 PRK13557 histidine kinase; Pro 94.7 0.07 1.5E-06 60.0 7.3 53 84-152 326-382 (540)
82 PRK09835 sensor kinase CusS; P 94.6 0.051 1.1E-06 60.5 6.0 52 39-104 378-429 (482)
83 PRK10547 chemotaxis protein Ch 94.6 0.18 4E-06 59.1 10.4 53 41-101 390-448 (670)
84 COG5000 NtrY Signal transducti 93.8 0.16 3.4E-06 57.7 7.4 53 43-104 607-661 (712)
85 PRK11073 glnL nitrogen regulat 93.5 0.12 2.5E-06 55.1 5.7 50 39-103 240-301 (348)
86 KOG0787|consensus 92.7 0.57 1.2E-05 50.4 9.2 124 38-196 262-385 (414)
87 COG2205 KdpD Osmosensitive K+ 92.4 0.55 1.2E-05 55.3 9.2 77 38-142 777-853 (890)
88 COG3920 Signal transduction hi 91.9 0.25 5.4E-06 50.2 5.2 47 39-96 125-173 (221)
89 PRK13560 hypothetical protein; 91.7 0.21 4.6E-06 59.2 5.3 45 40-97 715-762 (807)
90 cd00329 TopoII_MutL_Trans MutL 91.0 0.39 8.5E-06 41.8 5.0 67 274-349 16-100 (107)
91 PRK11644 sensory histidine kin 90.9 0.22 4.7E-06 56.6 4.0 43 40-97 414-456 (495)
92 COG0643 CheA Chemotaxis protei 90.7 0.29 6.2E-06 57.9 4.9 122 41-190 437-572 (716)
93 COG2172 RsbW Anti-sigma regula 90.7 0.9 2E-05 43.1 7.4 85 38-153 42-129 (146)
94 PRK10600 nitrate/nitrite senso 90.5 0.26 5.7E-06 56.7 4.3 44 39-97 472-515 (569)
95 COG3850 NarQ Signal transducti 89.2 0.43 9.4E-06 53.5 4.5 43 40-97 485-527 (574)
96 COG4585 Signal transduction hi 87.8 0.55 1.2E-05 50.9 4.1 44 39-97 282-325 (365)
97 COG4251 Bacteriophytochrome (l 86.5 2.2 4.7E-05 49.1 7.8 67 71-151 656-728 (750)
98 COG4192 Signal transduction hi 84.4 1.5 3.3E-05 48.4 5.3 53 39-106 567-622 (673)
99 COG5002 VicK Signal transducti 83.1 2.3 4.9E-05 45.7 5.8 56 72-139 362-419 (459)
100 COG2972 Predicted signal trans 82.7 3.2 6.8E-05 46.7 7.3 56 34-101 348-405 (456)
101 KOG0355|consensus 81.6 2 4.4E-05 50.6 5.2 126 37-188 54-192 (842)
102 PRK10935 nitrate/nitrite senso 81.0 1.4 3E-05 50.3 3.7 42 40-96 475-517 (565)
103 KOG1845|consensus 80.5 1.6 3.6E-05 51.5 4.0 92 39-152 149-246 (775)
104 PRK13559 hypothetical protein; 79.9 2.4 5.2E-05 45.3 4.9 45 39-96 270-318 (361)
105 COG4564 Signal transduction hi 52.6 29 0.00063 37.3 5.8 55 33-100 352-408 (459)
106 KOG1845|consensus 43.6 15 0.00032 43.7 2.3 51 85-152 2-53 (775)
107 COG3851 UhpB Signal transducti 40.5 31 0.00068 37.5 3.9 26 71-96 428-455 (497)
108 COG2865 Predicted transcriptio 39.0 49 0.0011 37.4 5.3 85 34-142 268-356 (467)
109 COG3275 LytS Putative regulato 31.7 56 0.0012 36.9 4.2 51 37-97 457-507 (557)
110 COG1578 Uncharacterized conser 30.6 2.5E+02 0.0054 29.5 8.4 104 359-475 74-181 (285)
111 KOG0019|consensus 30.0 53 0.0012 37.9 3.8 77 433-509 270-346 (656)
112 PTZ00069 60S ribosomal protein 29.6 76 0.0016 33.5 4.5 37 364-407 199-235 (300)
113 PF06523 DUF1106: Protein of u 25.8 21 0.00045 29.5 -0.2 27 305-331 55-81 (91)
114 COG3852 NtrB Signal transducti 25.2 1.2E+02 0.0026 32.5 5.1 59 39-102 244-306 (363)
115 PF04122 CW_binding_2: Putativ 25.0 1.1E+02 0.0024 26.0 4.2 55 444-501 24-79 (92)
116 PF07492 Trehalase_Ca-bi: Neut 23.4 62 0.0013 22.3 1.7 11 82-92 13-23 (30)
117 PF06112 Herpes_capsid: Gammah 22.7 84 0.0018 29.8 3.1 32 587-618 16-62 (147)
118 PF12641 Flavodoxin_3: Flavodo 22.3 7E+02 0.015 23.9 10.6 132 418-601 2-138 (160)
119 PF14501 HATPase_c_5: GHKL dom 21.6 1.5E+02 0.0032 25.6 4.3 15 40-54 9-23 (100)
120 cd03567 VHS_GGA VHS domain fam 21.1 1.4E+02 0.003 28.1 4.2 39 364-407 101-139 (139)
121 PF12588 PSDC: Phophatidylseri 20.5 1.6E+02 0.0034 27.9 4.5 48 593-640 2-57 (141)
122 PF13603 tRNA-synt_1_2: Leucyl 20.1 70 0.0015 31.6 2.1 28 583-610 35-62 (185)
No 1
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-158 Score=1294.50 Aligned_cols=614 Identities=58% Similarity=0.974 Sum_probs=580.2
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..+++.||+|+++||++|+|||||+++||||||||||+|||+|+|+++++++.......+++|+|.+|+++++|+|.|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 45789999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF 171 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 171 (642)
||||++|+.++|||||+|||++|++++.+++ ++..+||||||||||||||||+|+|+||+++ .+.++.|+|+|+|.|
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~-~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~--~~~~~~W~S~g~g~y 159 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQ-KDSDLIGQFGVGFYSAFMVADKVTVITRSAG--EDEAYHWESDGEGEY 159 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhcccc-ccccccccccchhhheeeeeeeEEEEeccCC--CCcceEEEEcCCCce
Confidence 9999999999999999999999999998765 6899999999999999999999999999998 788889999999999
Q ss_pred EEEecCCCCC-ccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCcccccc
Q psy2391 172 TIETINKTNR-GTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWAR 250 (642)
Q Consensus 172 ~v~~~~~~~~-GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~ 250 (642)
+|++++..++ ||+|+|||+++..+|+++|+|+++|++||.|+++||++..++.. ++ ...+|+.+|..+|+|++
T Consensus 160 tv~~~~~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~-~~-----~~~~~e~iN~~~alW~r 233 (623)
T COG0326 160 TVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK-DE-----EVIEWETINKAKALWTR 233 (623)
T ss_pred EEeeccCCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc-cc-----cchhHHHhccccCcccC
Confidence 9999988785 99999999999999999999999999999999999999653211 11 13578999999999999
Q ss_pred CCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCCCchhhh
Q psy2391 251 GKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDAEQLLPT 330 (642)
Q Consensus 251 ~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~~~llP~ 330 (642)
+++++++++|.+||++++++|++||.|+|+++||.++++++||||+.+||++|++..++|++||||||||+|+|++|||.
T Consensus 234 ~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd~~~llP~ 313 (623)
T COG0326 234 NKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDDAEDLLPN 313 (623)
T ss_pred ChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCChhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcch
Q psy2391 331 YLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNN 410 (642)
Q Consensus 331 ~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~ 410 (642)
||+||+|||||+|||||||||+||+|++++.||++|++|++++|++||++ +|| +|.+||++||.+||+|+++|.+|
T Consensus 314 yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~~-~~e---~y~~f~~~fg~~LKeG~~eD~~n 389 (623)
T COG0326 314 YLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAKD-DPE---KYRKFWKQFGLVLKEGLYEDFEN 389 (623)
T ss_pred HHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc-CHH---HHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999 999 99999999999999999999999
Q ss_pred HHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcc
Q psy2391 411 KERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFI 490 (642)
Q Consensus 411 ~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l 490 (642)
++++++||||.||... ..+++||+||++||+++|+.|||++|++..++.+||++|.|++||||||+|+|+||++++..+
T Consensus 390 ~e~l~~lLrf~St~~~-~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~ 468 (623)
T COG0326 390 KEKLLDLLRFRSTSDS-GEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTML 468 (623)
T ss_pred HHHHHhhhEecccCCC-ccCcccHHHHHHhcccccceeEEeccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhh
Confidence 9999999999996432 237899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHH
Q psy2391 491 PKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMI 570 (642)
Q Consensus 491 ~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~ 570 (642)
.+|+|++|++|++++++++.+.++. +...++.+.++++|++++|+.|+++|.+|++|+||+++|||++++..+++.+|+
T Consensus 469 ~e~egk~~~~i~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~k~~L~~~vk~Vr~s~rl~dspa~l~~~~~~~~~~m~ 547 (623)
T COG0326 469 PEFEGKPFKSITKGDLDLELLEEED-EADSEEEKKEFKPLLERVKEILGDKVKDVRLSHRLTDSPACLTTDGADLSTQME 547 (623)
T ss_pred hhccCCcceeeccccccccccchhh-hhhhHHHHHHHHHHHHHHHHHhcCccceeEeecccCCCcceeecCccchhHHHH
Confidence 9999999999999998877654432 223456677899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCCCceEEEcCCCHHHHHHhh--CcccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhc
Q psy2391 571 RMLKAAGQETPNSKPILEINPNHALIQRIQL--NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640 (642)
Q Consensus 571 r~m~~~~~~~~~~k~~LEINp~HplIkkL~~--~~~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~ 640 (642)
|+|++|++..+..++||||||+||||++|.. |...++++|++|||+|||++|++++||..|++|+|++|.
T Consensus 548 r~l~~~~~~~~~~k~ilEiNp~h~lv~~L~~~~d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~ 619 (623)
T COG0326 548 RLLKAQGQEVPESKKILEINPNHPLVKKLASLEDEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLS 619 (623)
T ss_pred HHHHhccccCCccccceeeCcccHHHHHHHhcccHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 9999999988889999999999999999998 677799999999999999999999999999999999985
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=4.7e-155 Score=1311.23 Aligned_cols=616 Identities=36% Similarity=0.618 Sum_probs=562.0
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..++++||+|+++||+||+++|||+++||||||||||+|||+|+|+.+++++++......+.|+|..|.++++|+|+|||
T Consensus 64 ~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnG 143 (814)
T PTZ00130 64 GIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTG 143 (814)
T ss_pred ccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECC
Confidence 35789999999999999999999999999999999999999999999999988877777899999999888999999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF 171 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 171 (642)
||||++||.++||+||+||++.|++++++. ..+..+|||||||||||||||++|+|+||+++ +.++.|+|+|+|.|
T Consensus 144 IGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~-~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~---~~~~~W~s~g~g~y 219 (814)
T PTZ00130 144 IGMTKEDLINNLGTIAKSGTSNFLEAISKS-GGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN---DEQYIWESTADAKF 219 (814)
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHHhhcc-CCCcccccccccchhheeeecCEEEEEEcCCC---CceEEEEECCCCcE
Confidence 999999999999999999999999988641 24678999999999999999999999999875 66899999999999
Q ss_pred EEEecCC---CCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccc-----c--------cccc------
Q psy2391 172 TIETINK---TNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETW-----D--------EEKK------ 229 (642)
Q Consensus 172 ~v~~~~~---~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~-----~--------~~g~------ 229 (642)
+|+++++ .++||+|+||||++..+|++.++|+++|++||.|++|||++...+. + ++|+
T Consensus 220 ~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 299 (814)
T PTZ00130 220 TIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSVKV 299 (814)
T ss_pred EEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccccccc
Confidence 9999753 4899999999999999999999999999999999999999964210 0 0110
Q ss_pred -----------ccccccCceEEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCC
Q psy2391 230 -----------ETVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRA 298 (642)
Q Consensus 230 -----------~~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~ 298 (642)
+.++...+|+.+|..+|||+++++++++++|.+||+++++++++||.|+|++++|+++|+|+||||+.+
T Consensus 300 ~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~~a 379 (814)
T PTZ00130 300 EETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPSRA 379 (814)
T ss_pred cccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecCCC
Confidence 001112468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccc-cccCCccEEEEcceeeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHh
Q psy2391 299 PYDLWD-RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDL 377 (642)
Q Consensus 299 p~~~~~-~~~~~~~~lyv~~v~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~l 377 (642)
|+++|+ ...+++++||||||||+|+|++|||.||+||+|||||+|||||||||+||+|++|++||+.|++|++++|.++
T Consensus 380 p~~~~~~~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~L~~l 459 (814)
T PTZ00130 380 PSINDHLFTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTFRTL 459 (814)
T ss_pred ccchhhhhhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 998775 3468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-----------------------------cCChHHHHHHHHHHHHHHHHHhhcccCCcchHHHhcccceeeecCCCCC
Q psy2391 378 ST-----------------------------SNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSD 428 (642)
Q Consensus 378 a~-----------------------------~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~ 428 (642)
++ + +|+ +|.+||++||.+||+||++|..|+++|++||||+||.+.
T Consensus 460 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-d~e---~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~~-- 533 (814)
T PTZ00130 460 YKEGKKNKETLRAELAKETDEEKKKEIQKKIN-EPS---TYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLHP-- 533 (814)
T ss_pred Hhhccccchhcccccccccccccccccccccc-cHH---HHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCCC--
Confidence 87 4 688 999999999999999999999999999999999999874
Q ss_pred CCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccccCCcceEEeecCCCCC
Q psy2391 429 IQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDL 508 (642)
Q Consensus 429 ~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l 508 (642)
+++||++|++||+++|+.|||++|++++++++|||+|.|+++|+|||||++||||||+++|.+|+|++|++|+++++++
T Consensus 534 -~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~ 612 (814)
T PTZ00130 534 -KSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITF 612 (814)
T ss_pred -CccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHHHHHccCC-----CCCC
Q psy2391 509 GNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQE-----TPNS 583 (642)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~m~~~~~~-----~~~~ 583 (642)
+..+.+. + ..+..++++++|++|+|++|+++|.+|++|+||++||||||++++|+|++|+|||++|+++ ++..
T Consensus 613 ~~~~~e~-~-~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~~~~~~~~~~ 690 (814)
T PTZ00130 613 ELTEDEK-K-KEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNNSDQIKAMSG 690 (814)
T ss_pred cccccch-h-hhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhccccccccccC
Confidence 5322221 1 2223455699999999999999999999999999999999999999999999999999864 3457
Q ss_pred CceEEEcCCCHHHHHHhh------CcccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhc
Q psy2391 584 KPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640 (642)
Q Consensus 584 k~~LEINp~HplIkkL~~------~~~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~ 640 (642)
++||||||+||||++|+. +++.++++|++|||+|+|++||+++||+.|++|+|+||.
T Consensus 691 k~iLEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~ 753 (814)
T PTZ00130 691 QKILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHIN 753 (814)
T ss_pred CeEEEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999962 344589999999999999999999999999999999996
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.2e-152 Score=1293.76 Aligned_cols=613 Identities=41% Similarity=0.735 Sum_probs=559.3
Q ss_pred cccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCC
Q psy2391 14 QTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIG 93 (642)
Q Consensus 14 ~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiG 93 (642)
+++.||+|+++||+||+++|||++++|||||||||+|||+++|+.+++++++......+.|+|..|.++++|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999998876666778899999888899999999999
Q ss_pred CCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEE
Q psy2391 94 MNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTI 173 (642)
Q Consensus 94 Mt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v 173 (642)
|+++||.++|++||+||++.|++++.. ..+..+|||||||||||||||++|+|+||+++ +.+|.|+|+|+|.|++
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~--~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~---~~~~~W~s~~~g~y~i 157 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEA--GGDMSMIGQFGVGFYSAYLVADRVTVTSKNNS---DESYVWESSAGGTFTI 157 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhc--cCCccccCCCCcceEEEEEeccEEEEEEecCC---CceEEEEECCCCcEEE
Confidence 999999999999999999999988753 24678999999999999999999999999875 4699999999999999
Q ss_pred EecCC--CCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccc-----ccc-----------ccc-----
Q psy2391 174 ETINK--TNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETW-----DEE-----------KKE----- 230 (642)
Q Consensus 174 ~~~~~--~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~-----~~~-----------g~~----- 230 (642)
.+++. .++||+|+|||+++..+|++.++|+++|++||.|++|||++...+. +++ |++
T Consensus 158 ~~~~~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (701)
T PTZ00272 158 TSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEE 237 (701)
T ss_pred EeCCCCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccccccc
Confidence 98763 4899999999999999999999999999999999999999964211 000 100
Q ss_pred --------------cccccCceEEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeC
Q psy2391 231 --------------TVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPS 296 (642)
Q Consensus 231 --------------~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~ 296 (642)
.++...+|+.+|+.+|||+++++++++++|.+||+++++++.+||+|+|++++|+++|+|+||||+
T Consensus 238 ~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~llyiP~ 317 (701)
T PTZ00272 238 VKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPK 317 (701)
T ss_pred ccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEEeCC
Confidence 011234689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccc-cCCccEEEEcceeeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHH
Q psy2391 297 RAPYDLWDRN-KRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILE 375 (642)
Q Consensus 297 ~~p~~~~~~~-~~~~~~lyv~~v~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~ 375 (642)
.+|+++|... .+++++||||||||+|+|++|||.||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.
T Consensus 318 ~~~~~~~~~~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~l~ 397 (701)
T PTZ00272 318 RAPFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFD 397 (701)
T ss_pred CCccchhhhhhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 9999998654 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCC
Q psy2391 376 DLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGEN 455 (642)
Q Consensus 376 ~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~ 455 (642)
++|++ ++ +|.+||++||.+||+|+++|.+|+++|++||||+||.++ ++++||+||++|||++|+.|||++|+|
T Consensus 398 ~la~~--~~---~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~--~~~~sL~eYv~rmk~~Q~~IYY~~~~s 470 (701)
T PTZ00272 398 EVAEN--KE---DYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESG--EEMTTLKDYVTRMKAGQKSIYYITGDS 470 (701)
T ss_pred HHhhC--HH---HHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCC--CceeeHHHHHHhhccCCceEEEEeCCC
Confidence 99887 78 999999999999999999999999999999999999753 378999999999999999999999999
Q ss_pred HhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHH
Q psy2391 456 YKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMK 535 (642)
Q Consensus 456 ~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k 535 (642)
++++++|||+|.|+++|+|||||+|||||||+++|.+|+|++|++|+++++++++.+++ +...+..++++++|++|+|
T Consensus 471 ~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e--~~~~~~~~~~~~~L~~~~k 548 (701)
T PTZ00272 471 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEE--KQQREEEKAACEKLCKTMK 548 (701)
T ss_pred HHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccc--hhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999886532221 1122334567999999999
Q ss_pred HHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHHHHHccC---C---CCCCCceEEEcCCCHHHHHHhh------Cc
Q psy2391 536 KILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQ---E---TPNSKPILEINPNHALIQRIQL------NN 603 (642)
Q Consensus 536 ~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~m~~~~~---~---~~~~k~~LEINp~HplIkkL~~------~~ 603 (642)
++|+++|.+|++|+||++||||||++++|+|++|+|||++|++ . ++..++||||||+||||++|++ ++
T Consensus 549 ~~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~ 628 (701)
T PTZ00272 549 EVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADEND 628 (701)
T ss_pred HHhCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccch
Confidence 9999999999999999999999999999999999999999974 1 2247899999999999999984 34
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhc
Q psy2391 604 DNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640 (642)
Q Consensus 604 ~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~ 640 (642)
+.++++|+||||+|+|++|++++||+.|++|+|+||.
T Consensus 629 ~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~ 665 (701)
T PTZ00272 629 KAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIK 665 (701)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999994
No 4
>KOG0019|consensus
Probab=100.00 E-value=2.7e-149 Score=1199.65 Aligned_cols=597 Identities=40% Similarity=0.709 Sum_probs=563.1
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.++|.||+++++|++++++++||++++||||||+||+||++|+||.++++++.. .+++.|+|.+++++++|+|.|+||
T Consensus 34 ~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~DtGI 111 (656)
T KOG0019|consen 34 QETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDTGI 111 (656)
T ss_pred ccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEecCC
Confidence 379999999999999999999999999999999999999999999999998765 678899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT 172 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 172 (642)
|||++||.++|||||+||++.|++.+++ .+++.+.|||||+||||+|+||++|+|+|++.. +.++.|++.++|+|+
T Consensus 112 GMTk~dLvnnLGTIAkSGtK~Fmealke-a~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~---~e~y~Wes~~~gs~~ 187 (656)
T KOG0019|consen 112 GMTKEDLVNNLGTIAKSGSKAFLEALKE-AEAESNLIGQFGVGFYSAFMVADRVVVTTRHPA---DEGLQWTSNGRGSYE 187 (656)
T ss_pred CcCHHHHHhhhhhhhhcccHHHHHHHHh-cccchhhhhhcccchhhhhhhhheeEEeeccCC---CcceeeecCCCCceE
Confidence 9999999999999999999999999983 246889999999999999999999999999985 559999999999999
Q ss_pred EEecCCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccCC
Q psy2391 173 IETINKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARGK 252 (642)
Q Consensus 173 v~~~~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~ 252 (642)
+...+...+||+|++|||++..+|+++.+|+++|++||.|+.|||+++. +.+|..+|||+++|
T Consensus 188 v~~~~~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~-----------------ek~N~tKpiW~rnp 250 (656)
T KOG0019|consen 188 IAEASGLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG-----------------ERVNNLKAIWTMNP 250 (656)
T ss_pred EeeccCccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh-----------------hhhhccCcccccCc
Confidence 9998888999999999999888999999999999999999999999953 34999999999999
Q ss_pred CCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCcc-ccccCCccEEEEcceeeecCCCchhhhh
Q psy2391 253 SEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLW-DRNKRNGIKLYVKRVFIMDDAEQLLPTY 331 (642)
Q Consensus 253 ~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~-~~~~~~~~~lyv~~v~i~d~~~~llP~~ 331 (642)
.+++.++|.+||+.++++|++|+++.||+++|+++|++++|+|.++||++| ++..++|++||++||||+|+|.+++|+|
T Consensus 251 ~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~lF~~~kk~n~i~Ly~rrv~I~d~~~~lipe~ 330 (656)
T KOG0019|consen 251 KEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDMRKKKNGIKLYARRVLITDDAGDLIPEW 330 (656)
T ss_pred hhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchhhhhhhccCceEEEEEEEecCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5677899999999999999999999999
Q ss_pred hhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcchH
Q psy2391 332 LRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNK 411 (642)
Q Consensus 332 l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~ 411 (642)
++|++|||||+|||||+|||+||+++++++||+.|++++++++.++| + |+| .|++||++||.+||+|+++|.+|+
T Consensus 331 l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a-~-d~e---~Y~kFy~~f~~~lk~gi~e~s~~~ 405 (656)
T KOG0019|consen 331 LRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLA-K-DAE---KYKKFFKNYGLFLKEGIVTASEQQ 405 (656)
T ss_pred hchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-h-hHH---HHHHHHHHHhhhhhhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999 4 599 999999999999999999999999
Q ss_pred HH-hcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcc
Q psy2391 412 ER-ISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFI 490 (642)
Q Consensus 412 ~~-~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l 490 (642)
.+ +++||||+||.+.+ +++||++|+.||+++|+.|||++|+|+.++++|||+|.++++|+|||||.+|+||+++++|
T Consensus 406 ~k~~a~lLry~ss~s~~--~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~L 483 (656)
T KOG0019|consen 406 VKEIAKLLRYESSKSGE--GATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGL 483 (656)
T ss_pred hhHHHHHhhhhcccccc--ccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhh
Confidence 88 99999999999864 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHH
Q psy2391 491 PKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMI 570 (642)
Q Consensus 491 ~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~ 570 (642)
.+|++++|++|+++++++++ +++++...++.+.+|+.||+|+|+.|+++|++|++|+||++||||||++++||+|+|+
T Consensus 484 k~~~~k~lVsvtkEglel~e--~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~vs~RlvssPc~I~t~~~gwsAnme 561 (656)
T KOG0019|consen 484 KEFKGKKLVSVTKEGVELPE--DDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTVNNRLVSHPAMITTLEYGWAARME 561 (656)
T ss_pred hhhcccceeccchhhccCCc--cchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEecCcccCCceEEEecccccchhHH
Confidence 99999999999999998773 2332334456677999999999999999999999999999999999999999999999
Q ss_pred HHHHHccC-C-----CCCCCceEEEcCCCHHHHHHhh----Ccc-cHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh
Q psy2391 571 RMLKAAGQ-E-----TPNSKPILEINPNHALIQRIQL----NND-NIHNWSHILFDQALLAENGVLNDPMNFVKRLNEML 639 (642)
Q Consensus 571 r~m~~~~~-~-----~~~~k~~LEINp~HplIkkL~~----~~~-~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll 639 (642)
++|+||+. + ++.++++|||||+||||+.|.+ |.. .+++++.|||++|||++||+++||+.|+.|+|+||
T Consensus 562 riMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml 641 (656)
T KOG0019|consen 562 RIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKNDTAKDLVEQLYETALISAGFSLDDPQTMVGRINRLL 641 (656)
T ss_pred HHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHH
Confidence 99999986 1 3467999999999999999997 322 89999999999999999999999999999999998
Q ss_pred cc
Q psy2391 640 LI 641 (642)
Q Consensus 640 ~~ 641 (642)
.+
T Consensus 642 ~~ 643 (656)
T KOG0019|consen 642 KS 643 (656)
T ss_pred HH
Confidence 64
No 5
>KOG0020|consensus
Probab=100.00 E-value=2.1e-147 Score=1150.63 Aligned_cols=616 Identities=41% Similarity=0.734 Sum_probs=566.4
Q ss_pred ccccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeC
Q psy2391 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDN 90 (642)
Q Consensus 11 ~~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~Dn 90 (642)
+..+++.||+++++||++++|+||.|++|||||||+||+||++|.|..+|+++..+....++.|.|..|+.++.|.|.|.
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 34589999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccchhhHhhhhcCc---cccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeC
Q psy2391 91 GIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQ---KKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEG 167 (642)
Q Consensus 91 GiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~---~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~ 167 (642)
|+|||++||.++||+||+||+.+|+.+++..+ ..-.++||||||||||+|+|||+|.|+|+++ ++.+|.|+|++
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhN---dD~QyiWESda 226 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHN---DDSQYIWESDA 226 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccC---CccceeeeccC
Confidence 99999999999999999999999999997421 1123899999999999999999999999998 57899999987
Q ss_pred CcceEEEecCC---CCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccc-------c------ccc---
Q psy2391 168 SGNFTIETINK---TNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETW-------D------EEK--- 228 (642)
Q Consensus 168 ~~~~~v~~~~~---~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~-------~------~~g--- 228 (642)
. +|+|...++ .++||+|+|+||++..+|+++.+|+++|++||.|+.|||+++..+. + +++
T Consensus 227 n-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed 305 (785)
T KOG0020|consen 227 N-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTED 305 (785)
T ss_pred c-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccc
Confidence 6 799987753 5899999999999999999999999999999999999999987542 0 011
Q ss_pred ----------cc-----cccccCceEEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEE
Q psy2391 229 ----------KE-----TVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLY 293 (642)
Q Consensus 229 ----------~~-----~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~ 293 (642)
+. ..++..+|+++|+.+|||+|+|.++++++|..||+.++.++.+|+.|+||.++|.+.|+++||
T Consensus 306 ~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLy 385 (785)
T KOG0020|consen 306 KEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILY 385 (785)
T ss_pred hhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEE
Confidence 00 123578999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCccc--c-ccCCccEEEEcceeeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHH
Q psy2391 294 IPSRAPYDLWD--R-NKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRI 370 (642)
Q Consensus 294 iP~~~p~~~~~--~-~~~~~~~lyv~~v~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i 370 (642)
+|+.+|.++|+ . ....+++|||+||||+|++.+++|.||.||+|||||+|||||||||+||++.+|+.|++.|++|+
T Consensus 386 VP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~ 465 (785)
T KOG0020|consen 386 VPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKV 465 (785)
T ss_pred eCCCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999993 2 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChHHHHHHHH-HHHHHHHHHhhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEE
Q psy2391 371 LNILEDLSTSNDKEKIIKYAN-FWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIY 449 (642)
Q Consensus 371 ~~~l~~la~~~~~e~~~~y~~-f~~~~~~~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iy 449 (642)
+++|+++|.. .|.. ||++||.+||.|+++|+.||.+|++||||+||+.. ++.+||++|++|||+.|+.||
T Consensus 466 LDmikKia~e-------~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~--~~~TsLdqYveRMK~kQ~~Iy 536 (785)
T KOG0020|consen 466 LDMIKKIAGE-------KYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHP--TKITSLDQYVERMKEKQDKIY 536 (785)
T ss_pred HHHHHHhhcc-------ccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCC--CCcccHHHHHHHHhhccccEE
Confidence 9999999887 6666 99999999999999999999999999999999864 478999999999999999999
Q ss_pred EEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHH
Q psy2391 450 YITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQN 529 (642)
Q Consensus 450 y~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 529 (642)
|++|.|+.+++.|||+|.+.++||||||+++|+||||+|+|.+|+|++|++|+++++.+++.+.. ++..+..+++|++
T Consensus 537 ymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~--Ke~~e~l~~~Fep 614 (785)
T KOG0020|consen 537 YMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKT--KESHEALEEEFEP 614 (785)
T ss_pred EecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccch--hHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988753322 2233457889999
Q ss_pred HHHHHHH-HhcccceEEEEeecCCCCCeEEEecCCCcchhHHHHHHHccCC---------CCCCCceEEEcCCCHHHHHH
Q psy2391 530 LIEEMKK-ILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQE---------TPNSKPILEINPNHALIQRI 599 (642)
Q Consensus 530 L~~~~k~-~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~m~~~~~~---------~~~~k~~LEINp~HplIkkL 599 (642)
|++|+|. +|.++|.+++||+||++|||++|++.+|||.+|+|+|++|+.. +..+|++|||||.||||+.|
T Consensus 615 L~~W~k~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirel 694 (785)
T KOG0020|consen 615 LTKWLKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIREL 694 (785)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHH
Confidence 9999998 6789999999999999999999999999999999999998752 24689999999999999999
Q ss_pred hh------CcccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhcc
Q psy2391 600 QL------NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLLI 641 (642)
Q Consensus 600 ~~------~~~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~~ 641 (642)
+. +++.++++|.+||.+|.|.+||.+.|+..|++|+..+|..
T Consensus 695 l~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~ 742 (785)
T KOG0020|consen 695 LRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQ 742 (785)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHh
Confidence 97 4668999999999999999999999999999999999863
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=1.3e-139 Score=1187.88 Aligned_cols=607 Identities=61% Similarity=1.002 Sum_probs=564.1
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..|+++||+|+++|+++|+++||++|++|||||||||+|||+++|+.+++++.+..+..+++|+|.++.++++|+|+|||
T Consensus 2 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 81 (613)
T PRK05218 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNG 81 (613)
T ss_pred CcceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECC
Confidence 36889999999999999999999999999999999999999999999999887766677889999999888899999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF 171 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 171 (642)
+|||++|+..+|++||+||+++|.++++++...+..+||+|||||||+||+|++|+|.||+.+ ++..++.|++.|++.|
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~-~~~~~~~w~~~g~~~~ 160 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAG-PAAEAVRWESDGEGEY 160 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCC-CCCceEEEEEeCCcee
Confidence 999999999999999999999999998643234678999999999999999999999999875 1456999999999999
Q ss_pred EEEecCCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccC
Q psy2391 172 TIETINKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARG 251 (642)
Q Consensus 172 ~v~~~~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~ 251 (642)
++++++..++||+|+|+||++..+|++.++|+++|++||.|+++||++. |+ .|+++|+++|+|+++
T Consensus 161 ~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~-------~~-------~~~~in~~~~~w~~~ 226 (613)
T PRK05218 161 TIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLE-------KE-------EEETINSASALWTRS 226 (613)
T ss_pred EEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEe-------cc-------cceeecCCccceecC
Confidence 9999876689999999999999999999999999999999999999993 32 357899999999999
Q ss_pred CCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCCCchhhhh
Q psy2391 252 KSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDAEQLLPTY 331 (642)
Q Consensus 252 ~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~~~llP~~ 331 (642)
++++++++|..||+.+++++.+||+++|+.++|++.++|++|+|+.+|+++|++..+++++||||||||+|++++|||+|
T Consensus 227 ~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~~~lLP~w 306 (613)
T PRK05218 227 KSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDAEELLPEY 306 (613)
T ss_pred CccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCchhhhchHH
Confidence 99999999999999999998999999999999999999999999999999998878999999999999999999999999
Q ss_pred hhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcchH
Q psy2391 332 LRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNK 411 (642)
Q Consensus 332 l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~ 411 (642)
++||+|||||+|||||||||+||+|+++++|++.|++|++++|.++|++ ||+ +|.+||++||.+||+||++|.+++
T Consensus 307 l~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la~~-d~~---~y~~f~~~~~~~lK~g~~~D~~~~ 382 (613)
T PRK05218 307 LRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAKN-DRE---KYEKFWKEFGPVLKEGLYEDFANR 382 (613)
T ss_pred HhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh-CHH---HHHHHHHHHHHHHHhhhhccHHHH
Confidence 9999999999999999999999999999999999999999999999999 899 999999999999999999999999
Q ss_pred HHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhccc
Q psy2391 412 ERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIP 491 (642)
Q Consensus 412 ~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~ 491 (642)
+++++||||+||+. ++++||+||++||+++|+.|||++++|++++.+|||+|.|+++|+|||++++|+|++|+++|.
T Consensus 383 ~~~~~lL~f~ts~~---~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~ 459 (613)
T PRK05218 383 EKLAKLLRFASTHE---GKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLE 459 (613)
T ss_pred HHHHhhceeeecCC---CCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHH
Confidence 99999999999962 257999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHH
Q psy2391 492 KFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIR 571 (642)
Q Consensus 492 ~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r 571 (642)
+|++++|++|+++++++.+..+++ +...+..++++++|++|+++.|+++|++|++|.||+++|||+++++++++++|+|
T Consensus 460 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~L~~~v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer 538 (613)
T PRK05218 460 EFDGKPFKSVARGDLDLGKEDEEE-KEEKEEAEEEFKPLLERLKEALGDKVKDVRLSHRLTDSPACLVADEGDMSTQMEK 538 (613)
T ss_pred HhcCCceEEeeccccccccccchh-hhhhhhhHHHHHHHHHHHHHHhcCcceEEEEeccCCCCCeEEEeCccchHHHHHH
Confidence 999999999999998765411111 1122344568999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCCCceEEEcCCCHHHHHHhh--CcccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhcc
Q psy2391 572 MLKAAGQETPNSKPILEINPNHALIQRIQL--NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLLI 641 (642)
Q Consensus 572 ~m~~~~~~~~~~k~~LEINp~HplIkkL~~--~~~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~~ 641 (642)
+|++|++.++..+++|||||+||||++|++ +++.++.+|++|||+|+|++|++++||..|++|+++||..
T Consensus 539 ~~~~~~~~~~~~~~~LeiNp~hplI~~L~~~~d~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~ 610 (613)
T PRK05218 539 LLKAAGQEVPESKPILEINPNHPLVKKLADEADEAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLK 610 (613)
T ss_pred HHHhhhhcccccceEEEEcCCCHHHHHHHhccChHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 999998776668999999999999999987 5556999999999999999999999999999999999963
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=1.5e-125 Score=1063.16 Aligned_cols=562 Identities=24% Similarity=0.383 Sum_probs=500.9
Q ss_pred ccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE-cCCCCEEEEEeCCCC
Q psy2391 15 TLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF-DKDNRTINISDNGIG 93 (642)
Q Consensus 15 ~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~-d~~~~~i~I~DnGiG 93 (642)
.++||+|+++||++|+++||+++++|||||||||+||+++++... +..+++|+|.+ +.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~--------~~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD--------PTAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC--------CCCCceEEEEEccCCCcEEEEEeCCCC
Confidence 479999999999999999999999999999999999999887642 12356888887 777789999999999
Q ss_pred CCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEE
Q psy2391 94 MNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTI 173 (642)
Q Consensus 94 Mt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v 173 (642)
||.+++.++|++||+||++.+. +. ..+...||+|||||||+||||++|+|.||+.+ ++.++.|++.++|.|++
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~---~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~--~~~~~~W~~~~~g~y~i 146 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG---FARNDFLGQFGIGLLSCFLVADEIVVVSRSAK--DGPAVEWRGKADGTYSV 146 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc---ccccccccccccceEEEEEecCEEEEEeccCC--CCceEEEEECCCCceEE
Confidence 9999999999999999998753 21 13567999999999999999999999999986 67899999999999999
Q ss_pred Eec--CCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccC
Q psy2391 174 ETI--NKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARG 251 (642)
Q Consensus 174 ~~~--~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~ 251 (642)
++. +..++||+|+|+++++..+|+++++|++++++||.|+++||++ +|++ +.+|+.+|+|+++
T Consensus 147 ~~~~~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l-------~~~~--------~~iN~~~~lW~~~ 211 (601)
T PRK14083 147 RKLETERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV-------EGEK--------GGVNETPPPWTRD 211 (601)
T ss_pred EeCCCCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCccc-------CCce--------eeecCCCCCccCC
Confidence 974 4568999999999999999999999999999999999999999 4432 6899999999999
Q ss_pred CCCCC--HHHHHHHHhhhccCCCCCceeeecccccceEEEEEEE-eeCCCCCCccccccCCccEEEEcceeeecCCCchh
Q psy2391 252 KSEIT--DEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLY-IPSRAPYDLWDRNKRNGIKLYVKRVFIMDDAEQLL 328 (642)
Q Consensus 252 ~~~~~--~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~-iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~~~ll 328 (642)
+++++ +++|.+||+.+++ .+||+|+|+++||+.. +|+|| +|..+|++ .+++++||||||||+|+|++||
T Consensus 212 ~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~-----~~~~v~LY~~rVfI~d~~~~lL 283 (601)
T PRK14083 212 YPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA-----ARRKHRVYLKRMLLSEEAENLL 283 (601)
T ss_pred ccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCcc-----ccCceEEEeeeeEeecchhhhh
Confidence 99998 9999999999887 5899999999999764 78887 69998875 3689999999999999999999
Q ss_pred hhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCc
Q psy2391 329 PTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDN 408 (642)
Q Consensus 329 P~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~ 408 (642)
|+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|+++|++ ||+ +|.+||++||.+||+||++|.
T Consensus 284 P~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~~-d~e---~y~~f~~~~g~~lK~g~~~D~ 359 (601)
T PRK14083 284 PDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLATT-DPE---RLRRLLAVHHLGVKALASHDD 359 (601)
T ss_pred HHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhh-CHH---HHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999999999999999999999 999 999999999999999999999
Q ss_pred chHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcC-CHhhHhcCcchHHHHhcCCEEEEeCCCchhHHh
Q psy2391 409 NNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGE-NYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWML 487 (642)
Q Consensus 409 ~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~-~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l 487 (642)
+|+++|++||||+||.+. +||+||++|| +.|||++++ ++++++ +.|+++|+|||+|++|+||+++
T Consensus 360 ~~~~~l~~lL~f~ss~~~-----~sL~eY~~r~----~~IyY~~~~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l 425 (601)
T PRK14083 360 ELLRLILPWLPFETTDGR-----MTLAEIRRRH----GVIRYTSSVDEFRQLA-----PIARAQGMGVINGGYTYDSELL 425 (601)
T ss_pred HHHHHHHHhceeecCCCC-----cCHHHHHHhC----CeEEEEcCHHHHHHHH-----HHHHHCCCeEEEeCCccHHHHH
Confidence 999999999999999864 8999999997 489999985 888876 6999999999999999999999
Q ss_pred hcccc-cCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEE-EEeecCCCCCeEEEecCCCc
Q psy2391 488 SFIPK-FENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDV-RVTYRLTDSPACLVVDENEP 565 (642)
Q Consensus 488 ~~l~~-~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V-~vs~rL~~sPa~~v~~e~~~ 565 (642)
++|.+ |++++|++|++++++ +.+... +...++++++|++|++++|++++++| ++|.||+++|||+++++++
T Consensus 426 ~~l~~~~~~~~~~~v~~~~~~-~~~~~~-----~~~~~~~~~~l~~~~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e~~- 498 (601)
T PRK14083 426 ERLPRLRPGLTVERLDPAELT-DRLEPL-----TPEEELALRPFLAEAREVLAPFGCDVVIRHFEPADLPALYLHDRAA- 498 (601)
T ss_pred HHHHhhCCCCcEEEechhhhh-hhcccc-----chhhHHHHHHHHHHHHHHhCccceEEEEEcCCCCCCCEEEEeCchh-
Confidence 99998 999999999998763 112211 12245679999999999999987777 6666999999999998743
Q ss_pred chhHHHHHHHcc---------------CCCCCCCceEEEcCCCHHHHHHhh--CcccHHHHHHHHHHHHHHcCCCCCC--
Q psy2391 566 SGNMIRMLKAAG---------------QETPNSKPILEINPNHALIQRIQL--NNDNIHNWSHILFDQALLAENGVLN-- 626 (642)
Q Consensus 566 s~~m~r~m~~~~---------------~~~~~~k~~LEINp~HplIkkL~~--~~~~~~~~~~~Lyd~All~~G~~l~-- 626 (642)
+|+++|++++ +..+..+++|||||+||||++|.+ +++.+++++++|||+|+|++|++++
T Consensus 499 --~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~~d~~~~~~~~~~Lyd~AlL~~g~~l~~~ 576 (601)
T PRK14083 499 --QHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATLGDPKLLSRAVEALYVQALLLGHRPLRPA 576 (601)
T ss_pred --HHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhccChHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 5666665432 122356899999999999999987 6777999999999999999999987
Q ss_pred CHHHHHHHHHHHhcc
Q psy2391 627 DPMNFVKRLNEMLLI 641 (642)
Q Consensus 627 d~~~f~~r~~~ll~~ 641 (642)
+|+.|+.++++||.+
T Consensus 577 e~~~~~~~~~~l~~~ 591 (601)
T PRK14083 577 EMALLNRSLLGLLEL 591 (601)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=5.5e-112 Score=943.72 Aligned_cols=438 Identities=48% Similarity=0.801 Sum_probs=377.6
Q ss_pred hccCHHHHHHHHHHhhccCCCCeEeeeccc-----c-----------cc-c---------c---------c-------cc
Q psy2391 195 EYLSSWKLKSIIRKYSDHISFPIKMYKETW-----D-----------EE-K---------K---------E-------TV 232 (642)
Q Consensus 195 e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~-----~-----------~~-g---------~---------~-------~~ 232 (642)
+|+++++|+++|++||.|++|||+++..+. + ++ + + + .+
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999976431 0 00 0 0 0 01
Q ss_pred cccCceEEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCcccc-ccCCcc
Q psy2391 233 ISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDR-NKRNGI 311 (642)
Q Consensus 233 ~~~~~~~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~-~~~~~~ 311 (642)
++..+|+.+|+++|||+|+++++++++|.+||+.+++++++||+|+||++||+++|+|+||||+.+|+++|.. ...++|
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~~~~~~i 160 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFENDKKKNGI 160 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSSTT--SE
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhhhccccc
Confidence 2346799999999999999999999999999999999999999999999999999999999999999999954 457999
Q ss_pred EEEEcceeeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH
Q psy2391 312 KLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYAN 391 (642)
Q Consensus 312 ~lyv~~v~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~ 391 (642)
+||||||||+|+|++|||.||+||+|||||+|||||||||+||+|+++++|++.|++|++++|.+||++ ++ +|.+
T Consensus 161 kLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d--~e---~y~~ 235 (531)
T PF00183_consen 161 KLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKD--RE---KYEK 235 (531)
T ss_dssp EEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTS--HH---HHHH
T ss_pred eeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhh--HH---HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999866 89 9999
Q ss_pred HHHHHHHHHhhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhc
Q psy2391 392 FWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKK 471 (642)
Q Consensus 392 f~~~~~~~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~k 471 (642)
||++||.+||+||++|..||++|++||||+||+++ ++++||++|++||+++|+.|||++|+|++++.+|||+|.|+++
T Consensus 236 f~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~--~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~k 313 (531)
T PF00183_consen 236 FWKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSE--GKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKK 313 (531)
T ss_dssp HHHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTT--TSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHC
T ss_pred HHHHHhHHHHhHHhhhhhhhhhcccceeeeccccc--cccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhh
Confidence 99999999999999999999999999999999874 3799999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCchhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecC
Q psy2391 472 SIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRL 551 (642)
Q Consensus 472 g~eVL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL 551 (642)
|+|||||++|||+||+++|.+|+|++|++|+++++++++.++ ++...+..++++++|++|++++|+++|.+|++|+||
T Consensus 314 G~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~--ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL 391 (531)
T PF00183_consen 314 GYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEE--EKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRL 391 (531)
T ss_dssp T--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHH--HHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSS
T ss_pred CceEEEeCCchHHHHHHHHhhccccccccccccccccccchh--hhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccc
Confidence 999999999999999999999999999999999988765322 222445667889999999999999999999999999
Q ss_pred CCCCeEEEecCCCcchhHHHHHHHccC------CCCCCCceEEEcCCCHHHHHHhh------CcccHHHHHHHHHHHHHH
Q psy2391 552 TDSPACLVVDENEPSGNMIRMLKAAGQ------ETPNSKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALL 619 (642)
Q Consensus 552 ~~sPa~~v~~e~~~s~~m~r~m~~~~~------~~~~~k~~LEINp~HplIkkL~~------~~~~~~~~~~~Lyd~All 619 (642)
++|||||+++++|+|++|+|||++|+. .++..++||||||+||||++|++ +++.++++|+||||+|+|
T Consensus 392 ~~sPa~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL 471 (531)
T PF00183_consen 392 VDSPAVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALL 471 (531)
T ss_dssp SSSSEEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcceeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhh
Confidence 999999999999999999999999863 24467899999999999999997 346789999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcc
Q psy2391 620 AENGVLNDPMNFVKRLNEMLLI 641 (642)
Q Consensus 620 ~~G~~l~d~~~f~~r~~~ll~~ 641 (642)
++|+.++||+.|++|+|+||.+
T Consensus 472 ~~G~~l~dp~~F~~Ri~~lL~~ 493 (531)
T PF00183_consen 472 ASGFELEDPAAFAKRINKLLEK 493 (531)
T ss_dssp HTTSS-SSHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999974
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.2e-27 Score=270.75 Aligned_cols=287 Identities=21% Similarity=0.347 Sum_probs=214.0
Q ss_pred hhHHHHHHHHhcCCC-----chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCC-EEEEEeCCCCCC
Q psy2391 22 VKPVLQLMIHSLYSN-----KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR-TINISDNGIGMN 95 (642)
Q Consensus 22 ~~~ll~ll~~~LYs~-----~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnGiGMt 95 (642)
++.|-+.+++.|.++ |..+|||||+||+||+ +.+|+|.++.+|. .|+|.|||+||+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAG------------------At~I~I~ve~gG~~~I~V~DNG~Gi~ 65 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAG------------------ATRIDIEVEGGGLKLIRVRDNGSGID 65 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccC------------------CCEEEEEEccCCccEEEEEECCCCCC
Confidence 566777788877776 8999999999999998 4689999988875 599999999999
Q ss_pred HHHHHHHHHHHHhccchhhHhhhhcCccccccccccccch--hhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce-E
Q psy2391 96 RNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVG--FYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF-T 172 (642)
Q Consensus 96 ~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiG--f~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~ 172 (642)
++|+..++.+|||| ||.. ..|...|..||+. .+++.+-+.+++|+||+.+ ...|+.|...|++.- +
T Consensus 66 ~~Dl~la~~rHaTS-------KI~~--~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~--~~~~~~~~~~g~~~~~~ 134 (638)
T COG0323 66 KEDLPLALLRHATS-------KIAS--LEDLFRIRTLGFRGEALASIASVSRLTITSRTAE--ASEGTQIYAEGGGMEVT 134 (638)
T ss_pred HHHHHHHHhhhccc-------cCCc--hhHHHHhhccCccHHHHHHHHhhheeEEEeecCC--cCceEEEEecCCccccc
Confidence 99999999999999 5543 2567778888876 6777777799999999765 678888888877543 5
Q ss_pred EEecCCCCCccEEEE------------EecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceE
Q psy2391 173 IETINKTNRGTDITL------------YLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFE 239 (642)
Q Consensus 173 v~~~~~~~~GT~I~l------------~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~ 239 (642)
+.|+ ..+.||+|+| ++|.+.+|| .+|.++|++|+ |..| |.+.
T Consensus 135 ~~p~-a~~~GTtVeV~dLF~NtPaRrKflks~~~E~---~~i~~vv~r~A--Lahp~I~F~------------------- 189 (638)
T COG0323 135 VKPA-AHPVGTTVEVRDLFYNTPARRKFLKSEKTEF---GHITELINRYA--LAHPDISFS------------------- 189 (638)
T ss_pred ccCC-CCCCCCEEEehHhhccChHHHHhhcccHHHH---HHHHHHHHHHH--hcCCCeEEE-------------------
Confidence 5554 3466999999 678888888 79999999999 6665 7663
Q ss_pred EeecCc---cccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEc
Q psy2391 240 VINQAS---ALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVK 316 (642)
Q Consensus 240 ~~n~~~---~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~ 316 (642)
+.++++ .+-..+......+.....|+. .+...+..++...++ +++.|++..|. +.+.++..+++|||
T Consensus 190 l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~---~~~~~~l~i~~~~~~-~~l~G~v~~P~------~~r~~~~~q~~fVN 259 (638)
T COG0323 190 LSHNGKLRIELLKLPGTGDLEERIAAVYGT---EFLKNALPIENEHED-LRLSGYVSLPE------FTRASRDYQYLFVN 259 (638)
T ss_pred EEECCceeeEEEecCCCCcHHHHHHHHhCH---HHHHhhcccccCCCc-eEEEEEecccc------cccCCccceEEEEC
Confidence 344443 333333443334456667765 333445556666665 88999998885 34778999999999
Q ss_pred ceeeecCC---------Cchh-----hhhhhceeeeecCCCCCCccch---h-hhccChhHHHHHHHHHHHHHHHHHHh
Q psy2391 317 RVFIMDDA---------EQLL-----PTYLRFVKGVIDSNNLPLNVSR---E-ILQESRDVKVIREGSTKRILNILEDL 377 (642)
Q Consensus 317 ~v~i~d~~---------~~ll-----P~~l~Fv~Gvvds~dl~lNvSR---E-~lq~~~~l~~i~~~l~~~i~~~l~~l 377 (642)
+|+|.|.. .++| |.|..||. +|+..+|+||.= | .|.+- +.|.+-|.+.|.+.|.+.
T Consensus 260 gR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~--l~p~~vDVNVHP~K~EVrf~~~---~~i~~~I~~~I~~~L~~~ 333 (638)
T COG0323 260 GRPVRDKLLNHALREAYADYLPRGRYPVFVLFLE--LDPELVDVNVHPAKKEVRFSDE---RLVHDLIYEAIKEALAQQ 333 (638)
T ss_pred CCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEe--eChhhcccccCCCcceEEecCH---HHHHHHHHHHHHHHHHhc
Confidence 99999984 4444 78999999 999999999974 3 22222 233444555555555543
No 10
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.88 E-value=8e-22 Score=226.05 Aligned_cols=254 Identities=19% Similarity=0.313 Sum_probs=179.4
Q ss_pred hcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2391 32 SLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAKSG 110 (642)
Q Consensus 32 ~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~Sg 110 (642)
....+|..+|+|||+||+||++ ..|.|.+..++ ..|+|.|||.||+.+++...+.++++|.
T Consensus 18 evI~~~~svvkElveNsiDAga------------------t~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 18 EVVERPASVVKELVENALDAGA------------------TRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CcccCHHHHHHHHHHHHHhCCC------------------CEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 3445689999999999999983 46777775444 4799999999999999999998888873
Q ss_pred chhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEE--
Q psy2391 111 TQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLY-- 188 (642)
Q Consensus 111 ~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~-- 188 (642)
-..+ +.+ ......|..|.|+.|.-.| ++++|.|++.+ +..++.+...++....+.+.. ..+||+|++.
T Consensus 80 i~~~-~dl-----~~~~t~GfrGeAL~sI~~v-s~l~i~s~~~~--~~~~~~~~~~~G~~~~~~~~~-~~~GT~V~v~~L 149 (617)
T PRK00095 80 IASL-DDL-----EAIRTLGFRGEALPSIASV-SRLTLTSRTAD--AAEGWQIVYEGGEIVEVKPAA-HPVGTTIEVRDL 149 (617)
T ss_pred CCCh-hHh-----hccccCCcchhHHHhhhhc-eEEEEEEecCC--CCceEEEEecCCcCcceeccc-CCCCCEEEechh
Confidence 2211 001 1235578889998777766 58999999876 566788776655433344432 3799999993
Q ss_pred ----------ecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEeecCccccccCCCCCCH
Q psy2391 189 ----------LRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVINQASALWARGKSEITD 257 (642)
Q Consensus 189 ----------lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~~~~~~ 257 (642)
++....++ .+|.+++++|+ +.+| |.+ .+.++.+.+|..++..-..
T Consensus 150 F~n~P~Rrkflk~~~~e~---~~i~~~v~~~A--l~~p~i~f-------------------~l~~~~~~~~~~~~~~~~~ 205 (617)
T PRK00095 150 FFNTPARRKFLKSEKTEL---GHIDDVVNRLA--LAHPDVAF-------------------TLTHNGKLVLQTRGAGQLL 205 (617)
T ss_pred hccCcHHHHhccCcHHHH---HHHHHHHHHHh--hcCCCcEE-------------------EEEECCEEEEEeCCCCCHH
Confidence 23333333 68999999999 6666 666 3444555567666554445
Q ss_pred HHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC---------C---
Q psy2391 258 EQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA---------E--- 325 (642)
Q Consensus 258 e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~---------~--- 325 (642)
+.....|+. .....+..+.....+ +.+.|++..|.. .+.++..+.+|||+|+|.++. +
T Consensus 206 ~~i~~i~g~---~~~~~l~~~~~~~~~-~~i~g~is~p~~------~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~ 275 (617)
T PRK00095 206 QRLAAILGR---EFAENALPIDAEHGD-LRLSGYVGLPTL------SRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLL 275 (617)
T ss_pred HHHHHHhCH---HhHhheEEEeccCCC-EEEEEEEeCccc------ccCCCcceEEEECCcEecCHHHHHHHHHHHHHhc
Confidence 666666643 222345666555444 899998888753 355678999999999998863 2
Q ss_pred --chhhhhhhceeeeecCCCCCCccc
Q psy2391 326 --QLLPTYLRFVKGVIDSNNLPLNVS 349 (642)
Q Consensus 326 --~llP~~l~Fv~Gvvds~dl~lNvS 349 (642)
+-.|.|+.||. +|+..+|+||.
T Consensus 276 ~~~~~P~~~l~i~--~~~~~~DvNvh 299 (617)
T PRK00095 276 PRGRYPAFVLFLE--LDPHQVDVNVH 299 (617)
T ss_pred cCCCCcEEEEEEE--eChHhcccccC
Confidence 23478999999 99999999994
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=2.4e-21 Score=205.43 Aligned_cols=256 Identities=18% Similarity=0.250 Sum_probs=169.4
Q ss_pred HhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCC-EEEEEeCCCCCCHHHHHHHHHHHHhc
Q psy2391 31 HSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR-TINISDNGIGMNRNDIITNLGTIAKS 109 (642)
Q Consensus 31 ~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnGiGMt~~el~~~l~~ia~S 109 (642)
.....++..+|+|||+||+||++ ..|.|.+..++. .|+|.|||.||+++++...+...++|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a------------------~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGA------------------TRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 44567889999999999999972 356666554444 59999999999999999877766665
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeec-CCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRH-VNSPITEGVLWESEGSGNFTIETINKTNRGTDITLY 188 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~-~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~ 188 (642)
....+- . .......|.+|.|++|...++ +++|+|+. .+ +..++.|...|+......+. ...+||+|++.
T Consensus 79 k~~~~~-~-----~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~--~~~~~~~~~~g~~~~~~~~~-~~~~GTtV~v~ 148 (312)
T TIGR00585 79 KIQSFE-D-----LERIETLGFRGEALASISSVS-RLTITTKTSAA--DGLAWQALLEGGMIEEIKPA-PRPVGTTVEVR 148 (312)
T ss_pred CCCChh-H-----hhcccccCccchHHHHHHhhC-cEEEEEeecCC--CcceEEEEECCCcCcccccc-cCCCccEEEEc
Confidence 332211 1 123467899999998888887 89999997 54 56788888544311122232 34899999995
Q ss_pred ------------ecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEeecCccccccCC--C
Q psy2391 189 ------------LRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVINQASALWARGK--S 253 (642)
Q Consensus 189 ------------lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~--~ 253 (642)
++....+| ..++.++++|+ +.+| |.+.. .++++..+...+ .
T Consensus 149 ~lf~n~p~r~~~~~~~~~~~---~~i~~~l~~~a--l~~p~i~f~l-------------------~~~~~~~~~~~~~~~ 204 (312)
T TIGR00585 149 DLFYNLPVRRKFLKSPKKEF---RKILDLLNRYA--LIHPDVSFSL-------------------THDGKKVLQLSTKPN 204 (312)
T ss_pred hhhccCchhhhhccCcHHHH---HHHHHHHHHHh--hcCCCeEEEE-------------------EECCEEEEEEcCCCC
Confidence 22222333 68999999999 5665 55532 222222222222 2
Q ss_pred CCCHH-HHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCc-cEEEEcceeeecCC-------
Q psy2391 254 EITDE-QYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNG-IKLYVKRVFIMDDA------- 324 (642)
Q Consensus 254 ~~~~e-~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~-~~lyv~~v~i~d~~------- 324 (642)
.-..+ .....|+. .....|..+.....+.++++|++.-|... +..... +.+|||+|+|....
T Consensus 205 ~~~~~~~i~~v~G~---~~~~~l~~~~~~~~~~~~v~G~is~p~~~------~~~~~~~q~ifvNgR~v~~~~l~k~I~~ 275 (312)
T TIGR00585 205 QSLKERRIRSVFGT---AVLSKLFPLLEWEDGDLQLEGFISEPNVT------RSRRSGWQFLFINGRPVELKLLLKAIRE 275 (312)
T ss_pred CCHHHHHHHHHhCh---HhHhhceeeecccCCCEEEEEEEcCcccc------cCCCCcceEEEECCcEecchHHHHHHHH
Confidence 22234 36666654 33344566653334458999988777643 223344 89999999998752
Q ss_pred --Cch-----hhhhhhceeeeecCCCCCCccc
Q psy2391 325 --EQL-----LPTYLRFVKGVIDSNNLPLNVS 349 (642)
Q Consensus 325 --~~l-----lP~~l~Fv~Gvvds~dl~lNvS 349 (642)
+.+ .|-|+.++. +++..+|+||+
T Consensus 276 ~y~~~~~~~~~P~~vL~i~--~p~~~iDvNv~ 305 (312)
T TIGR00585 276 VYHEYLPKGQYPVFVLNLE--IDPELVDVNVH 305 (312)
T ss_pred HHHHhccCCCCcEEEEEEE--EChHHcccCCC
Confidence 222 477888888 99999999986
No 12
>KOG1979|consensus
Probab=99.71 E-value=3.2e-17 Score=177.41 Aligned_cols=285 Identities=20% Similarity=0.276 Sum_probs=189.0
Q ss_pred hhHHHHHHHHhcCCC-----chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCC
Q psy2391 22 VKPVLQLMIHSLYSN-----KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMN 95 (642)
Q Consensus 22 ~~~ll~ll~~~LYs~-----~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt 95 (642)
+++|-+.++|.+..+ |.-+|+|||.|++||. .+.|.|.+..+| +.|.|+|||.|+-
T Consensus 8 IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~------------------ST~I~V~vk~GGLKLlQisDnG~GI~ 69 (694)
T KOG1979|consen 8 IRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDAN------------------STSIDVLVKDGGLKLLQISDNGSGIR 69 (694)
T ss_pred hhcCcHHHHhHhhccchhhchHHHHHHHHhccccCC------------------CceEEEEEecCCeEEEEEecCCCccc
Confidence 566666677766665 8899999999999997 457888886666 5789999999999
Q ss_pred HHHHHHHHHHHHhccchhhHhhhhcCccccccccccccch--hhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE-
Q psy2391 96 RNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVG--FYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT- 172 (642)
Q Consensus 96 ~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiG--f~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~- 172 (642)
++||.-...+.++| |++. -.|...+..||+. .+|++.-+.+|+|+|+.++ +..||+-.- .+|...
T Consensus 70 reDl~ilCeRftTS-------KL~k--FEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~--~~cayrasY-~DGkm~~ 137 (694)
T KOG1979|consen 70 REDLPILCERFTTS-------KLTK--FEDLFSLSTYGFRGEALASISHVAHVTVTTKTAE--GKCAYRASY-RDGKMIA 137 (694)
T ss_pred hhhhHHHHHHhhhh-------hcch--hHHHHhhhhcCccHHHHhhhhheeEEEEEEeecC--ceeeeEEEe-ecccccc
Confidence 99999999999998 3432 2577788899986 7889998999999999986 555654432 344322
Q ss_pred -EEecCCCCCccEEEE------------EecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCce
Q psy2391 173 -IETINKTNRGTDITL------------YLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEF 238 (642)
Q Consensus 173 -v~~~~~~~~GT~I~l------------~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~ 238 (642)
.+|+ ....||.|++ .|+...+|| .+|-.++.+|+ +..| |.+.+++ .|+.
T Consensus 138 ~pKpc-Agk~GT~I~vedLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryA--IHn~~VsFs~rk---~Gd~-------- 200 (694)
T KOG1979|consen 138 TPKPC-AGKQGTIITVEDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYA--IHNPRVSFSLRK---QGDT-------- 200 (694)
T ss_pred CCCCc-cCCCceEEEehHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHh--eeCCCcceEEee---cccc--------
Confidence 2233 3378999999 466667888 89999999999 6565 7776653 2321
Q ss_pred EEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecc-ccc---ceEEEEEEEeeCCCCCCccccccCCccEEE
Q psy2391 239 EVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNH-VEG---RNEYIQLLYIPSRAPYDLWDRNKRNGIKLY 314 (642)
Q Consensus 239 ~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~-~eg---~~~~~gll~iP~~~p~~~~~~~~~~~~~ly 314 (642)
.+-....++-...+.+...|+. +-...|.. +++ .++ .++..|++..+.. ...+...-||
T Consensus 201 ------~~dl~t~~~~s~~D~ir~i~g~---~Va~~ll~-els~~~~~~l~f~~~g~Isn~n~-------~akk~i~vlF 263 (694)
T KOG1979|consen 201 ------VADLRTSVSCSREDNIRNIYGV---SVAKNLLN-ELSKCDSKLLKFSAEGYISNANY-------SAKKSILVLF 263 (694)
T ss_pred ------ccccccCCccccccchhhhhhh---HHHHHHHH-HhhhccCceeEEeccceEechhh-------hhhhheEEEE
Confidence 1111112221222333334432 11111221 222 221 2334454444432 1234455899
Q ss_pred EcceeeecCC---------Cchhhh---hhhceeeeecCCCCCCccc---hh--hhccChhHHHHHHHHHHHH
Q psy2391 315 VKRVFIMDDA---------EQLLPT---YLRFVKGVIDSNNLPLNVS---RE--ILQESRDVKVIREGSTKRI 370 (642)
Q Consensus 315 v~~v~i~d~~---------~~llP~---~l~Fv~Gvvds~dl~lNvS---RE--~lq~~~~l~~i~~~l~~~i 370 (642)
+|+|+|.... ...||. .+.|+.=.||++.+|+||= || .|.+..++..|++.+..++
T Consensus 264 IN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL~qEeIie~I~~~ie~~L 336 (694)
T KOG1979|consen 264 INGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFLNQEEIIERICQQIEERL 336 (694)
T ss_pred EcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEeecHHHHHHHHHHHHHHHH
Confidence 9999997663 233564 5667777899999999994 55 5566678888887777765
No 13
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.67 E-value=1.7e-16 Score=148.38 Aligned_cols=103 Identities=36% Similarity=0.447 Sum_probs=78.4
Q ss_pred CCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcC-CCCEEEEEeCCCCCCHHHHHHHHHHHHhccch
Q psy2391 34 YSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDK-DNRTINISDNGIGMNRNDIITNLGTIAKSGTQ 112 (642)
Q Consensus 34 Ys~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~-~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~ 112 (642)
|+. +.+|+|||+||+||++.. +.|.|..+. +...|.|.|||.||+.++|.. +++++.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 555 899999999999999642 355555542 346999999999999999998 7788888654
Q ss_pred hhHhhhhcCccccccccccccch-hhhhhcccCEEEEEeecCCCCCCceEEEEE
Q psy2391 113 EFFSKLSGDQKKDASLIGQFGVG-FYSAFIVAKKIIVKSRHVNSPITEGVLWES 165 (642)
Q Consensus 113 ~f~~~~~~~~~~~~~~iG~fGiG-f~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~ 165 (642)
.. ++...+|+||+| ++|+|+++++++|+|+..+ ....+.|..
T Consensus 63 ~~---------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~--~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE---------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNG--ESFTYTIDY 105 (137)
T ss_dssp HH---------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTT--SSSEEEEEE
T ss_pred ch---------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECC--CCcEEEEEE
Confidence 21 245679999999 8899999999999999987 555666554
No 14
>KOG1978|consensus
Probab=99.53 E-value=9.3e-14 Score=154.43 Aligned_cols=275 Identities=18% Similarity=0.278 Sum_probs=176.3
Q ss_pred HHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHH
Q psy2391 28 LMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTI 106 (642)
Q Consensus 28 ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~i 106 (642)
|-+.+...+..++|||||.||+||+ +..|+|.++..| ..|.|.|||.|+++.+..-.-..+
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAG------------------AT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh 73 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAG------------------ATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKH 73 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccC------------------CceeeEecCCCCcceEEEecCCCCCCccchhhhhhhh
Confidence 3344555667899999999999998 457888876655 589999999999999988655556
Q ss_pred HhccchhhHhhhhcCccccccccccccch--hhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE-EEecCCCCCcc
Q psy2391 107 AKSGTQEFFSKLSGDQKKDASLIGQFGVG--FYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT-IETINKTNRGT 183 (642)
Q Consensus 107 a~Sg~~~f~~~~~~~~~~~~~~iG~fGiG--f~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~-v~~~~~~~~GT 183 (642)
-+|.-.+| .|....-.||+. .+|+.+.-..|.|.|++.. ...|..|..+..|... ..++++ ++||
T Consensus 74 ~TSKi~~f---------~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~--~~vgt~l~~Dh~G~I~~k~~~ar-~~GT 141 (672)
T KOG1978|consen 74 TTSKIVSF---------ADLAVLFTLGFRGEALSSLCALGDVMISTRSHS--AKVGTRLVYDHDGHIIQKKPVAR-GRGT 141 (672)
T ss_pred hhhcccch---------hhhhhhhhhhhHHHHHHhhhhccceEEEEeecc--CccceeEEEccCCceeeeccccC-CCCC
Confidence 66643333 345555566655 5688887788889999875 6778899888777543 334434 9999
Q ss_pred EEEEE-----e--------cCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCcccccc
Q psy2391 184 DITLY-----L--------RSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWAR 250 (642)
Q Consensus 184 ~I~l~-----l--------k~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~ 250 (642)
+|.|. | +.-.++| .++..+++.|+. +.--|.+.+.+ ....+....+|..
T Consensus 142 TV~v~~LF~tLPVR~kef~r~~Kref---~k~i~li~~y~l-i~~~ir~~~~n--------------~t~~~~k~iil~t 203 (672)
T KOG1978|consen 142 TVMVRQLFSTLPVRRKEFQRNIKRKF---VKLISLIQAYAL-ISTAIKFLVSN--------------STLAGKKNIILKT 203 (672)
T ss_pred EEEHhhhcccCCCchHHhhcchhhhh---hhHHhhHHHHHh-hcccceeeeee--------------ccccCCceeEEec
Confidence 99992 1 1112445 577888999985 34335554321 1234455677877
Q ss_pred CCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC-----C
Q psy2391 251 GKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA-----E 325 (642)
Q Consensus 251 ~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~-----~ 325 (642)
.......+.....|+......-.|+..+..-..| + .+.....+.+|+|+|.|...- .
T Consensus 204 ~~~~~~k~~i~svfg~~~~~~l~p~~~is~~~~g----------~--------~r~s~drqf~fIn~Rpv~~~~i~~~in 265 (672)
T KOG1978|consen 204 GGYGSDKINISSNFGSVEEENLEPLIFISSCHHG----------C--------GRSSEDRQFIFINRRPVFPSDICRVIN 265 (672)
T ss_pred CCcchHHHHHHhhhhhhhhhcccccccccccccc----------c--------cccCccceeeeecCccCCHHHHHHHHH
Confidence 7665555555555544322222333311111111 1 134567789999999984331 1
Q ss_pred chh-h----hhhhceeeeecCCCCCCccch---h-hhccCh-hHHHHHHHHHHHHH
Q psy2391 326 QLL-P----TYLRFVKGVIDSNNLPLNVSR---E-ILQESR-DVKVIREGSTKRIL 371 (642)
Q Consensus 326 ~ll-P----~~l~Fv~Gvvds~dl~lNvSR---E-~lq~~~-~l~~i~~~l~~~i~ 371 (642)
++. + -| .||. |+...+||||+= . .|++.+ ++..++..++..+-
T Consensus 266 evy~~~~~~q~-l~i~--V~~~~iDvNvtPDK~~vll~~e~~vl~~l~~~l~~~~~ 318 (672)
T KOG1978|consen 266 EVYKLYNERQY-LFLD--VPEGCIDVNVTPDKRQVLLSNERSVLFSLRNSLVDFYN 318 (672)
T ss_pred HHhhhhccccc-eeee--ccccceeeeeCCCcceeeccchHHHHHHHHHHHHHHHh
Confidence 111 1 13 5777 999999999996 3 444444 66777777776655
No 15
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.32 E-value=1.2e-11 Score=140.52 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=133.3
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-C--EEEEEeCCCCCCHHHHHHHHHH-HHhccchhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-R--TINISDNGIGMNRNDIITNLGT-IAKSGTQEF 114 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~--~i~I~DnGiGMt~~el~~~l~~-ia~Sg~~~f 114 (642)
.+++|||.||+||+.... ....|.|.+...+ . .|+|.|||.||+++++...|.+ +++|
T Consensus 39 ~VVkELVeNAIDA~~~~g-------------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atS----- 100 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-------------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGS----- 100 (659)
T ss_pred HHHHHHHHHHHHHhhccC-------------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccC-----
Confidence 678999999999985311 1124555543322 2 5999999999999999998887 3333
Q ss_pred HhhhhcCccccccccccccchhhhhhcccC-----EEEEEeecCCCCCCc-eEEE--EE--eCCcceEEEecCCCCCccE
Q psy2391 115 FSKLSGDQKKDASLIGQFGVGFYSAFIVAK-----KIIVKSRHVNSPITE-GVLW--ES--EGSGNFTIETINKTNRGTD 184 (642)
Q Consensus 115 ~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~-----~v~V~Sr~~~~~~~~-~~~w--~~--~~~~~~~v~~~~~~~~GT~ 184 (642)
++. .-....|+.|+|+.++-+++. .+.|.|+..+ +.. .+.| .. +++.....+.....++||+
T Consensus 101 --K~~----~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~--G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~ 172 (659)
T PRK14867 101 --KMH----RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGD--GKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTR 172 (659)
T ss_pred --ccc----ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCC--CEEEEEEEEEEecccCCeecccccCCCCCCCcE
Confidence 111 112455889999877765543 4688888643 221 1233 22 2222112211123479999
Q ss_pred EEEEecCchhhccC-HHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEeecCccccccCCCCCCHHHHHH
Q psy2391 185 ITLYLRSKEEEYLS-SWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVINQASALWARGKSEITDEQYIE 262 (642)
Q Consensus 185 I~l~lk~~~~e~~~-~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~~~ 262 (642)
|++.+++-. |-. +..+.+++++++ +..| +.+.... +|.+ ++. .+.....|+ ...+..-.
T Consensus 173 Ie~~V~dLF--ynR~E~~i~e~l~r~A--LanP~i~f~l~~---~~~~---------~~~-~r~~~~lp~--~~~e~~ph 233 (659)
T PRK14867 173 VEGEFKEVT--YNRREQGPFEYLRRIS--LSTPHAKITLKD---PEET---------VVF-DRTVDEIPE--KPEEMKPH 233 (659)
T ss_pred EEEEEeece--echhhHHHHHHHHHHH--HhCCCcEEEEEe---CCcc---------ccC-CcceeecCc--CHHHHhhc
Confidence 995544311 111 234899999999 7777 6553321 2111 000 122222222 11232223
Q ss_pred HHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecC----CCch-----hhhhhh
Q psy2391 263 FYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDD----AEQL-----LPTYLR 333 (642)
Q Consensus 263 fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~----~~~l-----lP~~l~ 333 (642)
.|+. + .+.|..+....++ +.++|++ .|... +.++..+. +|...++... .+++ .|.++.
T Consensus 234 ~~G~---~-~~~Li~i~~~~~~-~~v~gfl-~p~~s------R~~~~~~~-~V~~~~l~~ai~~ay~~~l~~~~~P~~~L 300 (659)
T PRK14867 234 PYGL---T-TDELLYIARKTDS-SKVSSML-NSELS------RVTTKRIK-ELEEYVLRDLLLENYRDSVFWDTVVSCYL 300 (659)
T ss_pred cCcc---c-hhhceehhccCCc-eEEEEEe-cchhc------cCCCCcEE-EEccHHHHHHHHHHHhhcccCCCcceEEE
Confidence 3332 3 3557777666554 8999987 77643 54555554 5543333222 2333 366777
Q ss_pred ceeeeecC
Q psy2391 334 FVKGVIDS 341 (642)
Q Consensus 334 Fv~Gvvds 341 (642)
|+. +|+
T Consensus 301 ~l~--i~~ 306 (659)
T PRK14867 301 NFD--FTK 306 (659)
T ss_pred EEE--eCc
Confidence 777 664
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.31 E-value=8e-12 Score=142.18 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=103.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR--TINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~--~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
.+|+|||.||+||+..- ...+.|.|.+...+. .|+|.|||+||+++++...|.+++++++-
T Consensus 49 tVLkNLIeNALDAs~~~-------------gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf---- 111 (795)
T PRK14868 49 TAVKEAVDNALDATEEA-------------GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRF---- 111 (795)
T ss_pred HHHHHHHHHHHHhCccc-------------CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccc----
Confidence 78999999999998421 112356665544443 69999999999999999999998865431
Q ss_pred hhhcCccccccccccccchhhhhhcccC-----EEEEEeecCCCCCCceEEEE--EeCCc---ce---EEEecCCCCCcc
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIVAK-----KIIVKSRHVNSPITEGVLWE--SEGSG---NF---TIETINKTNRGT 183 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v~~-----~v~V~Sr~~~~~~~~~~~w~--~~~~~---~~---~v~~~~~~~~GT 183 (642)
. ......|+.|+|+-++.+++. .+.|.|+..+ ...++.|. .+++. .. ...+. ..++||
T Consensus 112 --~----~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~--~~~g~~~~L~Id~gkNep~I~~~~~~~~-~~~~GT 182 (795)
T PRK14868 112 --H----AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQG--SEEAQYFELIIDTDTNEPEISVEETTTW-DRPHGT 182 (795)
T ss_pred --c----ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCC--CCceeEEEEEEecCCCccceecceeccc-CCCCce
Confidence 1 111345889999888877654 4899999765 45666444 34332 21 12222 347999
Q ss_pred EEEEEecCchhhccCHHHHHHHHHHhhccCCCC-eEe
Q psy2391 184 DITLYLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKM 219 (642)
Q Consensus 184 ~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~ 219 (642)
+|+|.|... |....+|.++|++++ +..| +.+
T Consensus 183 ~IeV~Lf~N---~pAR~kI~eyl~r~A--l~nP~a~f 214 (795)
T PRK14868 183 RIELEMEAN---MRARQQLHDYIKHTA--VVNPHARI 214 (795)
T ss_pred EEEEEEEcc---CchhhhHHHHHHHHH--hhCCCeEE
Confidence 999997643 444578999999999 7777 555
No 17
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.30 E-value=2.1e-11 Score=130.12 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=100.8
Q ss_pred CCCc----hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHh
Q psy2391 34 YSNK----EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAK 108 (642)
Q Consensus 34 Ys~~----~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~ 108 (642)
|++| ...++|||.||+|||+.... .+.+.|+|.--..+ .+++|+|||+|++.+.+.+.||++-.
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaGI-----------LPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAGI-----------LPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcCC-----------CCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 6665 36799999999999986543 22344454432222 37999999999999999999999988
Q ss_pred ccchhhHhhhhcCccccccccccccchh-----hhhhcccCEEEEEeecCCCCCCceEEEEEeCC----cceEEEe--c-
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGF-----YSAFIVAKKIIVKSRHVNSPITEGVLWESEGS----GNFTIET--I- 176 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf-----~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~----~~~~v~~--~- 176 (642)
+++-. .....-||+|||. ||-.-.+..++|.|+..+ ...++.++..-+ ..--++. .
T Consensus 99 gSKfh----------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~--s~~~~~~~l~id~~kNEp~Iv~r~~~~ 166 (538)
T COG1389 99 GSKFH----------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGD--SGTAYEYELKIDVQKNEPEIVERGEVE 166 (538)
T ss_pred cchhh----------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCC--CcceEEEEEEecCCCCcchhhhccccc
Confidence 76542 2344569999995 555557888999999876 556665543211 1112222 1
Q ss_pred -CCCCCccEEEEEecCchhhccCHHH-HHHHHHHhh
Q psy2391 177 -NKTNRGTDITLYLRSKEEEYLSSWK-LKSIIRKYS 210 (642)
Q Consensus 177 -~~~~~GT~I~l~lk~~~~e~~~~~~-i~~~i~~ys 210 (642)
...++||+|+++++..... ...+ +.+.+++-+
T Consensus 167 ~~~~~hGT~Vel~~~~~~~~--~~~qgi~eYlkrta 200 (538)
T COG1389 167 NPGGWHGTRVELELKGVWYR--AKRQGIYEYLKRTA 200 (538)
T ss_pred CCCCCCceEEEEEecccchh--hcccCHHHHHHHHh
Confidence 1337999999999977321 1123 555555554
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.24 E-value=7.2e-11 Score=131.97 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=103.4
Q ss_pred CCCc----hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEc--CCC-CEEEEEeCCCCCCHHHHHHHHHHH
Q psy2391 34 YSNK----EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFD--KDN-RTINISDNGIGMNRNDIITNLGTI 106 (642)
Q Consensus 34 Ys~~----~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d--~~~-~~i~I~DnGiGMt~~el~~~l~~i 106 (642)
|+++ ..+++|||+||+||++.... .+.+.|.+... .++ ..|+|+|||+||+++++...|+++
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 5565 56799999999999953210 11233444332 222 469999999999999999988876
Q ss_pred HhccchhhHhhhhcCccccccccccccchhhhhhcccC-----EEEEEeecCCCCCCceEEEEEe-----CCcce-EEEe
Q psy2391 107 AKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAK-----KIIVKSRHVNSPITEGVLWESE-----GSGNF-TIET 175 (642)
Q Consensus 107 a~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~-----~v~V~Sr~~~~~~~~~~~w~~~-----~~~~~-~v~~ 175 (642)
.++++. . ......|++|+|+.++.+++. .+.|.|+..+ +..++.++.. ..+.. ..+.
T Consensus 99 ~~~SK~------~----~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~--g~~~~~~~l~id~~kn~g~i~~~~~ 166 (535)
T PRK04184 99 LYGSKF------H----NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGG--SKKAYYFELKIDTKKNEPIILEREE 166 (535)
T ss_pred hccccc------c----ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCC--CceEEEEEEEecccccCCeeccccc
Confidence 443221 1 113456899999988877654 5899998765 4435655542 12211 1111
Q ss_pred cC-CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCC-eEee
Q psy2391 176 IN-KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMY 220 (642)
Q Consensus 176 ~~-~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~ 220 (642)
.+ ..++||+|.|.++..... ...+|.+++++++ +..| +.+.
T Consensus 167 ~~~~~~~GT~V~V~l~~~~~~--~~~~I~e~i~r~A--l~nP~~~~~ 209 (535)
T PRK04184 167 VDWDRWHGTRVELEIEGDWYR--AKQRIYEYLKRTA--IVNPHARIT 209 (535)
T ss_pred cCCCCCCCEEEEEEECCcChh--hHHHHHHHHHHHH--HhCCCeEEE
Confidence 11 347899999998866432 2578999999999 5555 4443
No 19
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.22 E-value=8.4e-11 Score=130.12 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=102.3
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCC-C--CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKD-N--RTINISDNGIGMNRNDIITNLGTIAKSGTQEFF 115 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~-~--~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~ 115 (642)
.+++|||.||+||++... ....|.|.+... + ..|+|.|||.||+.+++...|.+..++++.
T Consensus 31 ~VlkELVeNAIDA~~~~g-------------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--- 94 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-------------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--- 94 (488)
T ss_pred HHHHHHHHHHHHHhhccC-------------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc---
Confidence 678999999999985311 122455555332 2 269999999999999999988875443321
Q ss_pred hhhhcCccccccccccccchhhhhhcccC-----EEEEEeecCCCCCCceEEEEEe-----CCcc-eEEEecCCC-CCcc
Q psy2391 116 SKLSGDQKKDASLIGQFGVGFYSAFIVAK-----KIIVKSRHVNSPITEGVLWESE-----GSGN-FTIETINKT-NRGT 183 (642)
Q Consensus 116 ~~~~~~~~~~~~~iG~fGiGf~S~f~v~~-----~v~V~Sr~~~~~~~~~~~w~~~-----~~~~-~~v~~~~~~-~~GT 183 (642)
. ......|.+|+|+.++.+++. .++|.|+..+ ...++.++.. .+|. ....+.... ++||
T Consensus 95 ---~----~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g--~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT 165 (488)
T TIGR01052 95 ---H----RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGG--EIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGT 165 (488)
T ss_pred ---c----cccccCCCccEehhHHHHHHHHcCCceEEEEEecCC--ceEEEEEEEEecccccCCeecceeecCCCCCCce
Confidence 1 123455899999988877765 4999999876 5556666653 1232 222233332 4899
Q ss_pred EEEEEecCchhhccCHHHHHHHHHHhhccCCCC-eEeee
Q psy2391 184 DITLYLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYK 221 (642)
Q Consensus 184 ~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~ 221 (642)
+|++........+ ...+|.+++++++ +..| +.+..
T Consensus 166 ~V~v~f~~~~~r~-~k~~i~e~l~~~A--l~nP~~~i~l 201 (488)
T TIGR01052 166 RIELEFKGVSYRR-SKQGVYEYLRRTA--VANPHAKIVL 201 (488)
T ss_pred EEEEEECCceeec-cHHHHHHHHHHHH--hhCCCeEEEE
Confidence 9999865432211 3479999999999 5555 55543
No 20
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.00 E-value=6.6e-09 Score=119.79 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=102.1
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHHHHHh
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT--------NLGTIAK 108 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~--------~l~~ia~ 108 (642)
+...++|||.||+|+... .....|.|.++.++ .|+|+|||.||+.+.... .|+++-+
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~dg-~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHADG-SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCCCEEEEEEeCCC-cEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 568899999999999731 12457888887654 899999999999988887 6666333
Q ss_pred ccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc-eE---EEecCCCCCccE
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN-FT---IETINKTNRGTD 184 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~-~~---v~~~~~~~~GT~ 184 (642)
+|+ +..+ ......|..|+|..++-+++++++|.|++.+ .. |.++..++.. -. +.+.....+||+
T Consensus 103 gsK------f~~~--~yk~SgGl~GvGls~vNalS~~l~V~s~r~g--~~--~~~~f~~G~~~~~l~~~~~~~~~~~GT~ 170 (631)
T PRK05559 103 GGK------FSNK--AYKFSGGLHGVGVSVVNALSSRLEVEVKRDG--KV--YRQRFEGGDPVGPLEVVGTAGKRKTGTR 170 (631)
T ss_pred cCc------cCCc--cccccCcccccchhhhhhheeeEEEEEEeCC--eE--EEEEEECCcCccCccccccccCCCCCcE
Confidence 332 2111 1224578899999999999999999999764 22 4444333211 11 222222478999
Q ss_pred EEEEecCch--hhccCHHHHHHHHHHhhccCCCCeEe
Q psy2391 185 ITLYLRSKE--EEYLSSWKLKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 185 I~l~lk~~~--~e~~~~~~i~~~i~~ys~~l~~pI~~ 219 (642)
|++...... ..-++...|.+.+++++- +..-+.+
T Consensus 171 V~f~PD~~iF~~~~~~~~~i~~~l~~~A~-lnpgl~i 206 (631)
T PRK05559 171 VRFWPDPKIFDSPKFSPERLKERLRSKAF-LLPGLTI 206 (631)
T ss_pred EEEEECHHHcCCcccCHHHHHHHHHHHHh-hCCCeEE
Confidence 999643211 112356789999999982 3333555
No 21
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.98 E-value=5.5e-09 Score=119.85 Aligned_cols=152 Identities=22% Similarity=0.202 Sum_probs=94.5
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH-------HHHHHHhccch
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT-------NLGTIAKSGTQ 112 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~-------~l~~ia~Sg~~ 112 (642)
.++|||.||+||... .....|.|.++.++ .|+|.|||.||+.+.... .+.++..+|.
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~- 68 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGG- 68 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccC-
Confidence 578999999999731 22568888887765 999999999999533211 1112222211
Q ss_pred hhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc----eEEEecCCCCCccEEEEE
Q psy2391 113 EFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN----FTIETINKTNRGTDITLY 188 (642)
Q Consensus 113 ~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~----~~v~~~~~~~~GT~I~l~ 188 (642)
++.+ .......|..|+|+.|+-+++++++|+|+..+ .. |.++...+|. ..+.+. ....||+|+.
T Consensus 69 ----kfd~--~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g--~~--~~~~~~~~G~~~~~~~~~~~-~~~~GT~V~F- 136 (594)
T smart00433 69 ----KFDD--DAYKVSGGLHGVGASVVNALSTEFEVEVARDG--KE--YKQSFSNNGKPLSEPKIIGD-TKKDGTKVTF- 136 (594)
T ss_pred ----CCCC--CCccccCCcccchHHHHHHhcCceEEEEEeCC--cE--EEEEEeCCCeECccceecCC-CCCCCcEEEE-
Confidence 1111 12234678889999999999999999999865 33 4444422221 122232 2379999995
Q ss_pred ecCchhhcc-----CHHHHHHHHHHhhccCCCCeEeee
Q psy2391 189 LRSKEEEYL-----SSWKLKSIIRKYSDHISFPIKMYK 221 (642)
Q Consensus 189 lk~~~~e~~-----~~~~i~~~i~~ys~~l~~pI~~~~ 221 (642)
.++..-|. +...|.+.++.++- +..-|.+..
T Consensus 137 -~Pd~~~F~~~~~~~~~~i~~rl~~~A~-l~pgl~i~l 172 (594)
T smart00433 137 -KPDLEIFGMTTDDDFELLKRRLRELAF-LNKGVKITL 172 (594)
T ss_pred -EECHHHhCCcccchHHHHHHHHHHHHh-cCCCcEEEE
Confidence 34443332 23778888999882 333366543
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.97 E-value=1e-08 Score=118.00 Aligned_cols=152 Identities=21% Similarity=0.213 Sum_probs=100.9
Q ss_pred CchhHHHHHHhcHHH---HhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHH-
Q psy2391 36 NKEIFLRELISNASD---ALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND--------IITNL- 103 (642)
Q Consensus 36 ~~~i~lRELIqNA~D---A~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e--------l~~~l- 103 (642)
++...|+|||.||+| |+ ...+|.|.++.+ +.|+|.|||.||+.++ +...|
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag-----------------~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t 91 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAG-----------------FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILT 91 (625)
T ss_pred CcceeehhhhhcccchhhcC-----------------CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhh
Confidence 357899999999999 53 134788888765 7899999999999988 77677
Q ss_pred HHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc-eEEE---ecCCC
Q psy2391 104 GTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN-FTIE---TINKT 179 (642)
Q Consensus 104 ~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~-~~v~---~~~~~ 179 (642)
..+|+| ++.++ .-....|.-|+|+.++=+++.+++|.|++.+ .. |.++..++.. -.+. ++...
T Consensus 92 ~lhags-------K~~~~--~~~~SgG~~GvGls~vnalS~~l~v~~~r~g--~~--~~~~~~~G~~~~~~~~i~~~~~~ 158 (625)
T TIGR01055 92 TLHAGG-------KFSNK--NYHFSGGLHGVGISVVNALSKRVKIKVYRQG--KL--YSIAFENGAKVTDLISAGTCGKR 158 (625)
T ss_pred cccccC-------CCCCC--cceecCCCcchhHHHHHHhcCeEEEEEEECC--eE--EEEEEECCeEccccccccccCCC
Confidence 334444 22211 1224678889999999999999999999765 22 5554443321 1111 22223
Q ss_pred CCccEEEEEecCch--hhccCHHHHHHHHHHhhccCCCC-eEee
Q psy2391 180 NRGTDITLYLRSKE--EEYLSSWKLKSIIRKYSDHISFP-IKMY 220 (642)
Q Consensus 180 ~~GT~I~l~lk~~~--~e~~~~~~i~~~i~~ys~~l~~p-I~~~ 220 (642)
..||+|++..-..- ..-.+..+|.+.+++++ +-+| |.+.
T Consensus 159 ~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA--~lnpgi~~~ 200 (625)
T TIGR01055 159 LTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKA--VLCRGVEIE 200 (625)
T ss_pred CCCeEEEEEECHHHCCCCccCHHHHHHHHHHHH--hhCCCcEEE
Confidence 58999998432210 11134578999999988 3344 6553
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.79 E-value=1.5e-07 Score=109.28 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=94.5
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchh---h
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQE---F 114 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~---f 114 (642)
...++|||.||+|-.. ......|.|.++.+ +.|+|+|||.||+.+ .+++|+... .
T Consensus 32 ~~vv~Elv~NaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~-------~h~~~ki~~~e~i 89 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM--------------AGYCDTINVTINDD-GSVTVEDNGRGIPVD-------IHPEEGISAVEVV 89 (654)
T ss_pred HhhhHHhhhccccccc--------------cCCCCEEEEEEeCC-CcEEEEEeCCCcCcc-------ccCcCCCCchHHh
Confidence 5689999999999321 01135788888764 469999999999985 223332111 0
Q ss_pred Hhhhhc----CccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc---eEEEecCCCCCccEEEE
Q psy2391 115 FSKLSG----DQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN---FTIETINKTNRGTDITL 187 (642)
Q Consensus 115 ~~~~~~----~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~---~~v~~~~~~~~GT~I~l 187 (642)
+..+.. +........|.-|+|+.|+-+++..++|.|++.+ .. |.++..++.. ..+.+. ...+||+|+.
T Consensus 90 ~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g--~~--~~~~~~~G~~~~~l~~~~~-~~~~GT~V~F 164 (654)
T TIGR01059 90 LTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDG--KI--YRQEFERGIPLGPLEVVGE-TKKTGTTVRF 164 (654)
T ss_pred eeeecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEEECC--eE--EEEEEeCCCcccCceeccC-CCCCCcEEEE
Confidence 000000 0012234678889999999999999999999765 22 4444443321 112332 3479999996
Q ss_pred EecCch--hhccCHHHHHHHHHHhhccCCCCeEeee
Q psy2391 188 YLRSKE--EEYLSSWKLKSIIRKYSDHISFPIKMYK 221 (642)
Q Consensus 188 ~lk~~~--~e~~~~~~i~~~i~~ys~~l~~pI~~~~ 221 (642)
+.-+.- ..-.+...|.+.++.++ ++...|.+..
T Consensus 165 ~pdp~~F~~~~~e~~~i~~rl~~~A-~l~pgl~i~l 199 (654)
T TIGR01059 165 WPDPEIFETTEFDFDILAKRLRELA-FLNSGVKISL 199 (654)
T ss_pred EEChHHhCCcccCHHHHHHHHHHhh-ccCCCeEEEE
Confidence 432221 11135688999999998 2333366643
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.70 E-value=4e-07 Score=105.24 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=94.4
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchh---h
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQE---F 114 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~---f 114 (642)
...++|||.||+|-.. ......|.|.++.+ +.|+|+|||.||+.+ .+++|+... .
T Consensus 39 ~~~v~ElvdNaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~-------~h~~~ki~~~e~i 96 (638)
T PRK05644 39 HHLVYEIVDNSIDEAL--------------AGYCDHIEVTINED-GSITVTDNGRGIPVD-------IHPKTGKPAVEVV 96 (638)
T ss_pred HhhhHHhhhccccccc--------------CCCCCEEEEEEeCC-CcEEEEEeCccccCC-------ccCCCCCCchHHh
Confidence 3578999999999421 01145788888765 489999999999986 223332111 0
Q ss_pred Hhhhh-c---CccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce-EEEecC-CCCCccEEEEE
Q psy2391 115 FSKLS-G---DQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF-TIETIN-KTNRGTDITLY 188 (642)
Q Consensus 115 ~~~~~-~---~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~v~~~~-~~~~GT~I~l~ 188 (642)
+..+. + +.....-..|..|+|+.|+-+++++++|+|++.+ . +|..+..++..- .+.+.. ....||+|+..
T Consensus 97 ~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g--~--~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~ 172 (638)
T PRK05644 97 LTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDG--K--IYYQEYERGVPVTPLEVIGETDETGTTVTFK 172 (638)
T ss_pred eeeecccCccCCCcccccCCccccchhhhhheeceEEEEEEeCC--c--EEEEEEECCeEccCccccCCcCCCCcEEEEE
Confidence 00110 0 0011223578889999999999999999999765 2 555555443211 122221 24789999963
Q ss_pred ecCchhhc----cCHHHHHHHHHHhhccCCCCeEee
Q psy2391 189 LRSKEEEY----LSSWKLKSIIRKYSDHISFPIKMY 220 (642)
Q Consensus 189 lk~~~~e~----~~~~~i~~~i~~ys~~l~~pI~~~ 220 (642)
++..-| ++...|.+.++.++- +...|.+.
T Consensus 173 --Pd~~~F~~~~~e~~~i~~rl~~~A~-l~pgl~i~ 205 (638)
T PRK05644 173 --PDPEIFETTEFDYDTLATRLRELAF-LNKGLKIT 205 (638)
T ss_pred --ECHHHcCCcccCHHHHHHHHHHHHh-hCCCcEEE
Confidence 332222 356789999999983 33336654
No 25
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.47 E-value=3.1e-07 Score=107.04 Aligned_cols=150 Identities=17% Similarity=0.246 Sum_probs=95.1
Q ss_pred hhHHHHHHhcHHH---HhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH----------HHHHHHH
Q psy2391 38 EIFLRELISNASD---ALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN----------DIITNLG 104 (642)
Q Consensus 38 ~i~lRELIqNA~D---A~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~----------el~~~l~ 104 (642)
...++|||.||+| |+ ....|+|+++.+ +.|+|+|||.||+.+ |+. |.
T Consensus 39 hhlv~EivdNaiDE~~AG-----------------~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAG-----------------HCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhcccccccccC-----------------CCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 4789999999999 54 135788888765 489999999999987 554 22
Q ss_pred HHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE-EEecC-CCCCc
Q psy2391 105 TIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT-IETIN-KTNRG 182 (642)
Q Consensus 105 ~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~-v~~~~-~~~~G 182 (642)
..-.+|+ +.++ ...-.-|.-|+|..++=+++++++|+|++.+ . .|..+...+..-. +.+.. ...+|
T Consensus 99 ~lhAggK------fd~~--~ykvSgGlhGvG~svvNAlS~~l~v~v~r~g--k--~~~q~f~~G~~~~~l~~~g~~~~~G 166 (756)
T PRK14939 99 VLHAGGK------FDQN--SYKVSGGLHGVGVSVVNALSEWLELTIRRDG--K--IHEQEFEHGVPVAPLKVVGETDKTG 166 (756)
T ss_pred eecccCC------CCCC--cccccCCccCccceEeehccCeEEEEEEeCC--e--EEEEEEecCccccCccccCCcCCCC
Confidence 2222222 2211 1122567889999999999999999999765 2 2444443332111 22222 24689
Q ss_pred cEEEEEecCch--hhccCHHHHHHHHHHhhccCCCCeEee
Q psy2391 183 TDITLYLRSKE--EEYLSSWKLKSIIRKYSDHISFPIKMY 220 (642)
Q Consensus 183 T~I~l~lk~~~--~e~~~~~~i~~~i~~ys~~l~~pI~~~ 220 (642)
|+|++.....- ..-++...|.+.++.++ ++..-+.+.
T Consensus 167 T~V~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~ 205 (756)
T PRK14939 167 TEVRFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIR 205 (756)
T ss_pred cEEEEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEE
Confidence 99999532210 11235678888899888 354446553
No 26
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.43 E-value=3.7e-07 Score=81.38 Aligned_cols=81 Identities=30% Similarity=0.456 Sum_probs=56.7
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
..++.||++||+|+.... ..+.|.+..+.+.-.|+|+|||.||+.+++...+....++
T Consensus 7 ~~il~~ll~Na~~~~~~~--------------~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~-------- 64 (111)
T PF02518_consen 7 RQILSELLDNAIKHSPEG--------------GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS-------- 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS--------
T ss_pred HHHHHHHHHHHHHHhcCC--------------CEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc--------
Confidence 357899999999998531 2344555445444589999999999999998755322222
Q ss_pred hhcCccccccccccccchhhhhhcccCE
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVAKK 145 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~~~ 145 (642)
+ .+....+.+|+|++.|-.+++.
T Consensus 65 ---~--~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 65 ---D--KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp ---S--SSSGGSSSSSHHHHHHHHHHHH
T ss_pred ---c--ccccccCCCChHHHHHHHHHHH
Confidence 1 1345567799999998887554
No 27
>KOG1977|consensus
Probab=98.25 E-value=2.2e-06 Score=95.81 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=91.3
Q ss_pred CchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhH
Q psy2391 36 NKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFF 115 (642)
Q Consensus 36 ~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~ 115 (642)
+-..+++||+.|++||.+ ..|.|.++-..-.+.|.|||.||+++||...=.+-++|.-. |.
T Consensus 21 sla~~VeElv~NSiDA~A------------------t~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h-~~ 81 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA------------------TCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCH-SV 81 (1142)
T ss_pred HHHHHHHHHHhhccccCc------------------eEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhhce-ec
Confidence 446789999999999983 46666666667789999999999999999644444555111 11
Q ss_pred hhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEE--EeCCcceEEEec--CCCCCccEEEEE---
Q psy2391 116 SKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWE--SEGSGNFTIETI--NKTNRGTDITLY--- 188 (642)
Q Consensus 116 ~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~--~~~~~~~~v~~~--~~~~~GT~I~l~--- 188 (642)
.-+ ......|--|-.++|. .--+..+|.|++.+ ...++... ..|.. ...-++ ++...||+|+|+
T Consensus 82 ndl-----~~~~tyGfRGeALasI-sd~s~l~v~skkk~--r~~~~~~kk~~~gs~-~~~l~iD~~R~~sGTtVtV~dlf 152 (1142)
T KOG1977|consen 82 NDL-----ENPRTYGFRGEALASI-SDMSSLVVISKKKN--RTMKTFVKKFQSGSA-LKALEIDVTRASSGTTVTVYDLF 152 (1142)
T ss_pred ccc-----ccccccccchhhhhhh-hhhhhhhhhhhhcC--CchhHHHHHHhcccc-ceecccccccccCCcEEEeHHhh
Confidence 111 1233444444445544 43355668888776 44444311 12221 122222 366899999993
Q ss_pred --------ecC--chhhccCHHHHHHHHHHhhccCCCCeEeeec
Q psy2391 189 --------LRS--KEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222 (642)
Q Consensus 189 --------lk~--~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~ 222 (642)
++. ...+| +.|+.-|-+.+- +...|.+.++
T Consensus 153 Y~lPVRRr~k~~~P~k~f---e~Ik~~i~~i~l-mHp~iSfsv~ 192 (1142)
T KOG1977|consen 153 YQLPVRRRLKCMDPRKEF---EKIKQRIEAISL-MHPSISFSVR 192 (1142)
T ss_pred hcchhhhhhhcCCHHHHH---HHHHHHHHHHHh-hccceeEEEE
Confidence 111 11233 667777776662 3334777554
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.46 E-value=0.00073 Score=57.10 Aligned_cols=86 Identities=23% Similarity=0.315 Sum_probs=56.1
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.+++|||.||.++... ....+.|.+..+...-.+.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999742 012344444444333468999999999999988765443111
Q ss_pred hcCccccccccccccchhhhhhcccC----EEEEEee
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAK----KIIVKSR 151 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~----~v~V~Sr 151 (642)
......+..|+|+..+-.+++ .+.+.+.
T Consensus 61 -----~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -----SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -----CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112233578999988877766 6666554
No 29
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.41 E-value=0.00029 Score=81.63 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=90.0
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------H-HHHHHh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT--------N-LGTIAK 108 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~--------~-l~~ia~ 108 (642)
...+.|+|.||+|=... .....|.|.++++ +.|+|.|||-||+.+ +.. . |+++-+
T Consensus 36 ~hlv~EIvdNavDE~~a--------------g~~~~I~V~i~~d-gsitV~DnGrGIPv~-~h~~~~~~~~E~v~t~Lha 99 (637)
T TIGR01058 36 HHLVWEIVDNSVDEVLA--------------GYADNITVTLHKD-NSITVQDDGRGIPTG-IHQDGNISTVETVFTVLHA 99 (637)
T ss_pred heehhhhhcchhhhhhc--------------CCCcEEEEEEcCC-CeEEEEECCCcccCc-ccCcCCCccceeEEEEecc
Confidence 45688999999994310 1245788888754 589999999999863 211 0 111112
Q ss_pred ccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEec-CCCCCccEEEE
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETI-NKTNRGTDITL 187 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~-~~~~~GT~I~l 187 (642)
+|+- .+ ..-.-.-|.-|+|.-.+=+++++++|.+++.| ......|+..+...-.+... ....+||+|+.
T Consensus 100 Ggkf------d~--~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~g--k~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F 169 (637)
T TIGR01058 100 GGKF------DQ--GGYKTAGGLHGVGASVVNALSSWLEVTVKRDG--QIYQQRFENGGKIVQSLKKIGTTKKTGTLVHF 169 (637)
T ss_pred cCcC------CC--CcccccCCcccccccccceeeceEEEEEEECC--EEEEEEEecCCcCcCCcccccCCCCCceEEEE
Confidence 2221 10 11123458889999888899999999998765 22233444221111011111 12368999988
Q ss_pred EecCch---hhccCHHHHHHHHHHhhccCCCCeEe
Q psy2391 188 YLRSKE---EEYLSSWKLKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 188 ~lk~~~---~e~~~~~~i~~~i~~ys~~l~~pI~~ 219 (642)
....+- .. ++...|.+-++..| |+..-+.+
T Consensus 170 ~PD~~iF~~~~-f~~d~l~~RlrelA-~Ln~GL~I 202 (637)
T TIGR01058 170 HPDPTIFKTTQ-FNSNIIKERLKESA-FLLKKLKL 202 (637)
T ss_pred EeCHHHcCCCc-cCHHHHHHHHHHHh-ccCCCcEE
Confidence 654321 22 35677888888777 34434444
No 30
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.25 E-value=0.00052 Score=73.68 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=47.1
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++..||+||+.+.. ....+.|.+..+.+.-.|+|+|||.||+++++...+...-+.
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM--------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC---------
Confidence 468889999887741 122345555444444579999999999999987644221100
Q ss_pred hcCccccccccccccchhhhhhccc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVA 143 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~ 143 (642)
+ ..-+.+|+|++-|-.++
T Consensus 307 ------~-~~~~g~GlGL~i~~~i~ 324 (356)
T PRK10755 307 ------D-SRYGGIGLGLSIVSRIT 324 (356)
T ss_pred ------C-CCCCCcCHHHHHHHHHH
Confidence 0 11256899998776553
No 31
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.16 E-value=0.0012 Score=73.09 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=49.1
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
.++.+|+.||+++.... ......|.|.....+ -.|+|.|||+||+++....-|...-++
T Consensus 390 ~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~------- 450 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTT------- 450 (494)
T ss_pred HHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCccc-------
Confidence 47899999999997431 011234555543333 369999999999998888665433221
Q ss_pred hhhcCccccccccccccchhhhhhcc
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
+.. ..+.-|+|++-|=.+
T Consensus 451 -------~~~-~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 451 -------KGG-SRKHIGMGLSVAQEI 468 (494)
T ss_pred -------CCC-CCCCCcccHHHHHHH
Confidence 111 145578998876554
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.12 E-value=0.0017 Score=71.88 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=46.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
..+.+||.||+.+.. +...+.|.+..+.+.-.|+|+|||.||+++++...+...-+. .
T Consensus 371 ~vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~-~------- 428 (475)
T PRK11100 371 QALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSL-P------- 428 (475)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccC-C-------
Confidence 457888899888741 122334444434433469999999999999988655432211 0
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.....-+..|+|++.|-..
T Consensus 429 -----~~~~~~~~~GlGL~i~~~~ 447 (475)
T PRK11100 429 -----RPANGRKSTGLGLAFVREV 447 (475)
T ss_pred -----CCCCCCCCcchhHHHHHHH
Confidence 0011124569999887655
No 33
>PRK10604 sensor protein RstB; Provisional
Probab=97.10 E-value=0.00086 Score=74.44 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=48.7
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++..||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+++++..-+....+..
T Consensus 322 ~vl~NLl~NAik~~~----------------~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~-------- 377 (433)
T PRK10604 322 RVLDNLLNNALRYAH----------------SRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD-------- 377 (433)
T ss_pred HHHHHHHHHHHHhCC----------------CeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC--------
Confidence 468889999887741 23455555554445799999999999999886554332210
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
......-|.+|+|++-+-.+
T Consensus 378 ----~~~~~~~~g~GLGL~ivk~i 397 (433)
T PRK10604 378 ----PSRDRATGGCGLGLAIVHSI 397 (433)
T ss_pred ----CCCCCCCCCccchHHHHHHH
Confidence 01112236789998765444
No 34
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.10 E-value=0.0011 Score=73.19 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=48.1
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++..||+||+.+.. +...+.|.+..+.+.-.|+|.|||+||+++++...+...-+..+
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~------- 378 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDK------- 378 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccC-------
Confidence 568899999999852 11223344433433347999999999999998875533222100
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
......|..|+|++-|-.+
T Consensus 379 -----~~~~~~~G~GLGL~ivk~i 397 (430)
T PRK11006 379 -----ARSRQTGGSGLGLAIVKHA 397 (430)
T ss_pred -----CCCCCCCCCchHHHHHHHH
Confidence 1112235679999876555
No 35
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=97.09 E-value=0.00058 Score=63.12 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHHHhhhccCCCCCceeeecccc---cceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC---------C
Q psy2391 258 EQYIEFYKHISHDFEKPLIYTHNHVE---GRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA---------E 325 (642)
Q Consensus 258 e~~~~fy~~~~~~~~~~l~~~~~~~e---g~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~---------~ 325 (642)
+....+|+. ++.+.|..+....+ +.+.++|++.-|... ..+..+.+|||+|+|.+.. +
T Consensus 4 ~~i~~v~G~---~~~~~li~i~~~~~~~~~~~~i~G~is~p~~~-------~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~ 73 (127)
T cd03483 4 DNIRSVYGA---AVANELIEVEISDDDDDLGFKVKGLISNANYS-------KKKIIFILFINNRLVECSALRRAIENVYA 73 (127)
T ss_pred HHHHHHhCH---HHHhcceEEecccCCcCCcEEEEEEEcCchhc-------CCCceEEEEEcCCEecCHHHHHHHHHHHH
Confidence 344556654 33345676765542 459999988777642 3477899999999999873 2
Q ss_pred ch-----hhhhhhceeeeecCCCCCCccc---hhhhccC--hhHHHHHHHHHH
Q psy2391 326 QL-----LPTYLRFVKGVIDSNNLPLNVS---REILQES--RDVKVIREGSTK 368 (642)
Q Consensus 326 ~l-----lP~~l~Fv~Gvvds~dl~lNvS---RE~lq~~--~~l~~i~~~l~~ 368 (642)
++ .|.++.|+. ||++.+|+||. ||..-.+ .++..|++.+.+
T Consensus 74 ~~l~~~~~P~~~L~i~--i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~ 124 (127)
T cd03483 74 NYLPKGAHPFVYLSLE--IPPENVDVNVHPTKREVHFLNEEEIIERIQKLVED 124 (127)
T ss_pred HhCcCCCccEEEEEEE--eChHHeeeccCCCccEEEecCHHHHHHHHHHHHHH
Confidence 33 377889999 99999999997 4544333 355555554443
No 36
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.09 E-value=0.00093 Score=78.61 Aligned_cols=73 Identities=25% Similarity=0.303 Sum_probs=45.6
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||+||.++.. +...+.|.+..+.+.-.|+|.|||.||+++.+.+.+-.-..+
T Consensus 582 ~vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~--------- 638 (679)
T TIGR02916 582 RVLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDT--------- 638 (679)
T ss_pred HHHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCC---------
Confidence 468899999999862 122344444443333479999999999998854433110011
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.+. +..|+|++.+-..
T Consensus 639 ----~~~----~G~GLGL~i~~~i 654 (679)
T TIGR02916 639 ----TKG----AGMGIGVYECRQY 654 (679)
T ss_pred ----CCC----CCcchhHHHHHHH
Confidence 011 5679999887655
No 37
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.08 E-value=0.0012 Score=73.24 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=48.1
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++..||.||+.+.. +...+.|.+..+.+.-.|+|.|||.||+++++...+.+.-+..
T Consensus 355 qvl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~-------- 412 (466)
T PRK10549 355 QLFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE-------- 412 (466)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC--------
Confidence 357788888888742 1223344444443334689999999999999886554332210
Q ss_pred hcCccccccccccccchhhhhhccc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVA 143 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~ 143 (642)
.......|..|+|++-+-.++
T Consensus 413 ----~~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 413 ----GSRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred ----CCcCCCCCCCcHHHHHHHHHH
Confidence 011224467899998665553
No 38
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=97.00 E-value=0.00047 Score=63.36 Aligned_cols=97 Identities=15% Similarity=0.300 Sum_probs=64.5
Q ss_pred HHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC---------Cc---
Q psy2391 259 QYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA---------EQ--- 326 (642)
Q Consensus 259 ~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~---------~~--- 326 (642)
.....|+. +..+.|..+....+ .+.++|++.-|... +.++..+.+|||+|+|.+.. ++
T Consensus 4 ri~~v~G~---~~~~~li~i~~~~~-~~~i~G~is~p~~~------r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~ 73 (123)
T cd03482 4 RLADILGE---DFAEQALAIDEEAG-GLRLSGWIALPTFA------RSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLH 73 (123)
T ss_pred HHHHHhCH---HHHhccceEeccCC-CEEEEEEEeCchhc------cCCCCcEEEEEcCcEECChHHHHHHHHHHHHhcc
Confidence 34455543 33345666664433 49999988877643 55688999999999998763 22
Q ss_pred --hhhhhhhceeeeecCCCCCCccc---hhh-hcc-ChhHHHHHHHHH
Q psy2391 327 --LLPTYLRFVKGVIDSNNLPLNVS---REI-LQE-SRDVKVIREGST 367 (642)
Q Consensus 327 --llP~~l~Fv~Gvvds~dl~lNvS---RE~-lq~-~~~l~~i~~~l~ 367 (642)
-.|.++.|+. +|++.+|+||. ||. |++ ..+...|++.+.
T Consensus 74 ~~~~P~~vL~l~--ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~ 119 (123)
T cd03482 74 GGRHPAYVLYLE--LDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVK 119 (123)
T ss_pred CCCCcEEEEEEE--cChHheeeccCCCccEEEECCHHHHHHHHHHHHH
Confidence 2488999999 99999999996 343 222 234455554443
No 39
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.98 E-value=0.0018 Score=71.32 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+++.+...+.+.-++..
T Consensus 356 ~~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~------- 414 (457)
T TIGR01386 356 RAISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP------- 414 (457)
T ss_pred HHHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc-------
Confidence 357888888887741 11223444433333337999999999999988876654333211
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.....-+..|+|++-+--+
T Consensus 415 -----~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 415 -----ARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred -----ccCCCCCCccccHHHHHHH
Confidence 0111235689998876554
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.94 E-value=0.0022 Score=70.03 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=49.3
Q ss_pred cCCCch---hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--cCCC-CEEEEEeCCCCCCHHHHHHHHHHH
Q psy2391 33 LYSNKE---IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--DKDN-RTINISDNGIGMNRNDIITNLGTI 106 (642)
Q Consensus 33 LYs~~~---i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d~~~-~~i~I~DnGiGMt~~el~~~l~~i 106 (642)
+|+++. -++..||.||+.+.. . ...|.|.. ..++ -.|+|.|||.||+++++...|...
T Consensus 266 v~~d~~~l~qvl~NLl~NAik~~~--------------~--~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf 329 (380)
T PRK09303 266 VYADQERIRQVLLNLLDNAIKYTP--------------E--GGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDR 329 (380)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCC--------------C--CceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCc
Confidence 455542 468889999998852 1 22455543 2333 368999999999999887655322
Q ss_pred HhccchhhHhhhhcCccccccccccccchhhhhhcc
Q psy2391 107 AKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 107 a~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
-+. .....-+..|+|++-|..+
T Consensus 330 ~~~--------------~~~~~~~G~GLGL~i~~~i 351 (380)
T PRK09303 330 VRL--------------PRDEGTEGYGIGLSVCRRI 351 (380)
T ss_pred eeC--------------CCCCCCCcccccHHHHHHH
Confidence 111 0111235689999877665
No 41
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.92 E-value=0.0011 Score=56.89 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=51.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.|++.||.++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-------
Confidence 4578899998888631 12345555544444579999999999998888655322111 0
Q ss_pred hcCccccccccccccchhhhhhcccCE
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAKK 145 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~~ 145 (642)
......++.|+|+..+-.++.+
T Consensus 66 -----~~~~~~~~~g~gl~~~~~~~~~ 87 (111)
T smart00387 66 -----GRSRKIGGTGLGLSIVKKLVEL 87 (111)
T ss_pred -----CCCCCCCcccccHHHHHHHHHH
Confidence 1123346789999888766544
No 42
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0011 Score=74.93 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=92.5
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHHHh
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND--------IITNLGTIAK 108 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e--------l~~~l~~ia~ 108 (642)
....+.|.|.||+|=-- ....-.|.|+++ .++.|+|.|||-||+-+- +.-.|..+-.
T Consensus 37 LhHlv~EVvDNsiDEal--------------aG~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEAL--------------AGYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHh--------------hCcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 45778999999999642 123558888887 457999999999998743 1111112222
Q ss_pred ccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc---eE-EEecCCCCCccE
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN---FT-IETINKTNRGTD 184 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~---~~-v~~~~~~~~GT~ 184 (642)
+|+-+ + ..-.-.=|--|||.--|=+++++++|.+++.| .-|+-....+.. .. +..++....||+
T Consensus 102 GGKFd------~--~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g----k~y~q~f~~G~~~~~l~~ig~~~~~~~GT~ 169 (635)
T COG0187 102 GGKFD------N--DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDG----KIYRQRFERGVPVTPLEVIGSTDTKKTGTK 169 (635)
T ss_pred CcccC------C--CccEeecCCCccceEEEecccceEEEEEEECC----EEEEEEEeCCCcCCCceecccCCCCCCccE
Confidence 22211 0 01112346779999888889999999999875 223322222221 11 222233467999
Q ss_pred EEEEecCc---hhhccCHHHHHHHHHHhhccCCCCeEe
Q psy2391 185 ITLYLRSK---EEEYLSSWKLKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 185 I~l~lk~~---~~e~~~~~~i~~~i~~ys~~l~~pI~~ 219 (642)
|+.+..++ ..+| +...|++.++.++ ||.--+.+
T Consensus 170 V~F~PD~~iF~~~~f-~~~~l~~RlrelA-~L~~gl~I 205 (635)
T COG0187 170 VRFKPDPEIFGETEF-DYEILKRRLRELA-FLNKGVKI 205 (635)
T ss_pred EEEEcChHhcCCccc-CHHHHHHHHHHHh-ccCCCCEE
Confidence 98864432 1333 5678888888887 45443444
No 43
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=96.85 E-value=0.00094 Score=60.92 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=57.9
Q ss_pred CCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC--------------Cchhhhhhhcee
Q psy2391 271 FEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA--------------EQLLPTYLRFVK 336 (642)
Q Consensus 271 ~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~--------------~~llP~~l~Fv~ 336 (642)
+...|..+....+ .+.++|++.-|... +.++..+.+|||+|+|.+.. .+-.|-|+.|+.
T Consensus 9 ~~~~l~~i~~~~~-~~~i~G~is~p~~~------~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~ 81 (119)
T PF01119_consen 9 FASNLIEIDSEDE-DFSIEGYISKPDVS------RSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIE 81 (119)
T ss_dssp HHCCEEEEEEEEC-CEEEEEEEE-SSCS------BSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE
T ss_pred HHhccEEEeccCC-CEEEEEEEECchhc------cCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEE
Confidence 3355777775545 49999988888643 55678999999999998873 223478999999
Q ss_pred eeecCCCCCCccc---hhhh--ccChhHHHHHHHHH
Q psy2391 337 GVIDSNNLPLNVS---REIL--QESRDVKVIREGST 367 (642)
Q Consensus 337 Gvvds~dl~lNvS---RE~l--q~~~~l~~i~~~l~ 367 (642)
+|++.+|+||. ||.. .++.++..|++.+.
T Consensus 82 --~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~ 115 (119)
T PF01119_consen 82 --IPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIR 115 (119)
T ss_dssp ---SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHH
T ss_pred --cchHHccccccccceEEEecCHHHHHHHHHHHHH
Confidence 99999999997 4433 23335555554443
No 44
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.80 E-value=0.0028 Score=71.60 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=59.3
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+++++...+...-+.
T Consensus 381 ~vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~--------- 435 (485)
T PRK10815 381 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRA--------- 435 (485)
T ss_pred HHHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccC---------
Confidence 367888888888862 1234555444333469999999999999987654321100
Q ss_pred hcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEecCc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRSK 192 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk~~ 192 (642)
+. .-+..|+|++-|--+++ . . +|.+.+.. ..+.||++++.++..
T Consensus 436 ------~~-~~~G~GLGL~Ivk~iv~------~-~--------------gG~i~v~s--~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 436 ------DT-LRPGQGLGLSVAREITE------Q-Y--------------EGKISAGD--SPLGGARMEVIFGRQ 479 (485)
T ss_pred ------CC-CCCCcchhHHHHHHHHH------H-c--------------CCEEEEEE--CCCCEEEEEEEEcCC
Confidence 00 11357999987655532 1 2 12334433 235788888887643
No 45
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.78 E-value=0.0048 Score=76.26 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=90.8
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH---------HHHHHHh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT---------NLGTIAK 108 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~---------~l~~ia~ 108 (642)
.-.+.|+|-||+|-... ......|.|+++.+++.|+|.|||-||+-+ ++. .|+++-+
T Consensus 79 ~kifdEIldNAvDe~~r-------------~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~LhA 144 (1465)
T PLN03237 79 YKIFDEILVNAADNKQR-------------DPKMDSLRVVIDVEQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHLLT 144 (1465)
T ss_pred hhhHHHHhhhhHhHHhh-------------cCCCCEEEEEEEcCCCEEEEEecCccccCC-CCCCCCCccceEEEEeeec
Confidence 35689999999997421 112457888888777899999999999864 221 1233333
Q ss_pred ccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceE--EEEEeCCc--ceEEEecCCCCCccE
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGV--LWESEGSG--NFTIETINKTNRGTD 184 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~--~w~~~~~~--~~~v~~~~~~~~GT~ 184 (642)
||+- .+ ....-.-|.-|+|.-.+=+++.+++|+++... ...-| .|+.+.+. .-.+........||+
T Consensus 145 GgkF------dd--~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~--~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~ 214 (1465)
T PLN03237 145 SSNY------DD--NEKKTTGGRNGYGAKLTNIFSTEFVIETADGK--RQKKYKQVFSNNMGKKSEPVITKCKKSENWTK 214 (1465)
T ss_pred cccC------CC--CcceeeccccccCccccccccCeeEEEEEECC--CCeEEEEEEeCCCCccCCceeccCCCCCCceE
Confidence 3322 11 12234568899999888889999999998321 22334 45432111 012222222368999
Q ss_pred EEEEecCc---hhhccCHHHHHHHHHHh---hccCCCCeEe
Q psy2391 185 ITLYLRSK---EEEYLSSWKLKSIIRKY---SDHISFPIKM 219 (642)
Q Consensus 185 I~l~lk~~---~~e~~~~~~i~~~i~~y---s~~l~~pI~~ 219 (642)
|+...... ..+ ++.+.|..+.++. |.|+.--+.+
T Consensus 215 VtF~PD~eiF~~~~-fd~D~l~~~~rRlrdLAa~LnkGlkI 254 (1465)
T PLN03237 215 VTFKPDLAKFNMTH-LEDDVVALMKKRVVDIAGCLGKTVKV 254 (1465)
T ss_pred EEEEECHHHhCCce-EcHHHHHHHHHHHHHHHhccCCCcEE
Confidence 98853322 122 3556665554444 3456433433
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.77 E-value=0.0036 Score=70.70 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=36.7
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--DKDNRTINISDNGIGMNRNDIITNLG 104 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d~~~~~i~I~DnGiGMt~~el~~~l~ 104 (642)
.++.+|+.||++|... .....|.|.+ +.+.-.|+|.|||.||+++++...|.
T Consensus 436 ~vl~nLl~NAi~~~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~ 489 (542)
T PRK11086 436 TILGNLIENALEAVGG--------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFD 489 (542)
T ss_pred HHHHHHHHHHHHHhhc--------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999731 1123455544 33334689999999999999887653
No 47
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.75 E-value=0.0046 Score=75.41 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=55.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
-++..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+++++...|....+..
T Consensus 582 ~il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~------- 639 (968)
T TIGR02956 582 QVLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD------- 639 (968)
T ss_pred HHHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-------
Confidence 468899999998852 22345666655555 5799999999999999887665433321
Q ss_pred hhcCccccccccccccchhhhhhcc----cCEEEEEeec
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIV----AKKIIVKSRH 152 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v----~~~v~V~Sr~ 152 (642)
.....|..|+|++-|-.+ +-++.|.|..
T Consensus 640 -------~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 640 -------GRRRSGGTGLGLAISQRLVEAMDGELGVESEL 671 (968)
T ss_pred -------CCCCCCCccHHHHHHHHHHHHcCCEEEEEecC
Confidence 122236679998766433 3456666553
No 48
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.72 E-value=0.0034 Score=76.09 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=45.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
-++..||+||+.+.. ...+.|.+..+.+.-.|+|+|||+||+++++...+...-+.
T Consensus 516 ~il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 571 (921)
T PRK15347 516 QILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQA--------- 571 (921)
T ss_pred HHHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccC---------
Confidence 457789999988752 12344444444333479999999999999987655322111
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
+ ...|..|+|+.-|-.+
T Consensus 572 ------~-~~~~g~GLGL~i~~~~ 588 (921)
T PRK15347 572 ------D-THSQGTGLGLTIASSL 588 (921)
T ss_pred ------C-CCCCCCchHHHHHHHH
Confidence 0 1125679998766444
No 49
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.68 E-value=0.0033 Score=65.59 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=45.8
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--DKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
++.+||.||+.+... ...|.|.+ +.+.-.|+|.|||.||+++.+...+....+...
T Consensus 233 vl~nll~Nai~~~~~----------------~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~------ 290 (333)
T TIGR02966 233 AFSNLVSNAIKYTPE----------------GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDK------ 290 (333)
T ss_pred HHHHHHHHhheeCCC----------------CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCc------
Confidence 688999999887521 12455544 333346999999999999988765432211100
Q ss_pred hhcCccccccccccccchhhhhhcc
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.....-+..|+|++.|-.+
T Consensus 291 ------~~~~~~~g~glGL~~~~~~ 309 (333)
T TIGR02966 291 ------SRSRDTGGTGLGLAIVKHV 309 (333)
T ss_pred ------ccccCCCCCcccHHHHHHH
Confidence 0111224569999877555
No 50
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.68 E-value=0.0042 Score=70.69 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=48.5
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
.+.+||+||++|+.+. ......|.|.....+ -.|.|.|||.||++++....|.. +.+.
T Consensus 436 vl~nLl~NAi~~~~~~------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~t------- 495 (545)
T PRK15053 436 IVGNLLDNAFEASLRS------------DEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVST------- 495 (545)
T ss_pred HHHHHHHHHHHHHhhC------------CCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCC-------
Confidence 5889999999997421 111234555543333 36899999999999988765532 1111
Q ss_pred hhcCccccccccccccchhhhhhccc
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVA 143 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~ 143 (642)
+.. --|..|+|++-+-.++
T Consensus 496 ------k~~-~~~g~GlGL~ivk~iv 514 (545)
T PRK15053 496 ------RAD-EPGEHGIGLYLIASYV 514 (545)
T ss_pred ------CCC-CCCCceeCHHHHHHHH
Confidence 111 1245699998876653
No 51
>PRK10364 sensor protein ZraS; Provisional
Probab=96.67 E-value=0.0044 Score=69.05 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l 103 (642)
..+..||.||++|... ...+.|.+..+.+.-.|+|.|||.||+++.+...+
T Consensus 351 ~il~NLl~NA~k~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 351 QVLLNLYLNAIQAIGQ--------------HGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHHhcCC--------------CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 4477889999999631 22334444444444479999999999999887655
No 52
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.66 E-value=0.0045 Score=75.79 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=88.9
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHHHHHhc
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDII--------TNLGTIAKS 109 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~--------~~l~~ia~S 109 (642)
.-.+.|+|-||+|-... ......|.|+++.+++.|+|.|||-||+-+--. -.|+++-+|
T Consensus 54 ~ki~dEIldNAvDe~~~-------------~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG 120 (1135)
T PLN03128 54 YKIFDEILVNAADNKQR-------------DPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS 120 (1135)
T ss_pred HHHHHHHHHHHHHHhhh-------------cCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc
Confidence 35689999999996411 012357888888867899999999999864111 012223333
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceE--EEEEeC-C-cceEEEecCCCCCccEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGV--LWESEG-S-GNFTIETINKTNRGTDI 185 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~--~w~~~~-~-~~~~v~~~~~~~~GT~I 185 (642)
|+- .+ ....-.-|.-|+|.-.+=+++.+++|++.... +..-| .|+..- . ..-.+.......+||+|
T Consensus 121 gkF------dd--~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r--~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~I 190 (1135)
T PLN03128 121 SNF------DD--NEKKTTGGRNGYGAKLANIFSTEFTVETADGN--RGKKYKQVFTNNMSVKSEPKITSCKASENWTKI 190 (1135)
T ss_pred ccc------CC--ccceeeccccCCCCeEEEeecCeEEEEEEECC--CCeEEEEEeCCCcccCCCceeccCCCCCCceEE
Confidence 332 11 12234568899999888889999999998321 22233 343210 0 01122222223589999
Q ss_pred EEEecCc---hhhccCHHHHHHH---HHHhhccCCCCeEe
Q psy2391 186 TLYLRSK---EEEYLSSWKLKSI---IRKYSDHISFPIKM 219 (642)
Q Consensus 186 ~l~lk~~---~~e~~~~~~i~~~---i~~ys~~l~~pI~~ 219 (642)
+...... ..+ ++.+.+..+ ++..+.|+.--+.+
T Consensus 191 tF~PD~~iF~~~~-fd~d~~~~l~kRl~elAa~Ln~GlkI 229 (1135)
T PLN03128 191 TFKPDLAKFNMTR-LDEDVVALMSKRVYDIAGCLGKKLKV 229 (1135)
T ss_pred EEEECHHHcCCCc-cChHHHHHHHHHHHHHHHhCCCCcEE
Confidence 8864322 122 344443333 33345566433444
No 53
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.62 E-value=0.0046 Score=76.59 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=89.2
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHHHHHhc
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDII--------TNLGTIAKS 109 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~--------~~l~~ia~S 109 (642)
.-.+.|+|-||+|-... ++ .......|.|.++.+.+.|+|.|||-||+-+--. ..|+++-+|
T Consensus 59 ~ki~dEIldNAvDe~~r-------~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKAR-------DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhcc-------cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 46789999999996521 00 0122458888888876799999999999864211 112333334
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecC--CCCCCceEEEEEeCCc--ceEEEecCCCCCccEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHV--NSPITEGVLWESEGSG--NFTIETINKTNRGTDI 185 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~--~~~~~~~~~w~~~~~~--~~~v~~~~~~~~GT~I 185 (642)
|+- .+ ....-.-|.-|+|.-.+=+++.+++|++... | ....-.|+..... .-.+........||+|
T Consensus 129 gkf------dd--~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~g--k~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~V 198 (1388)
T PTZ00108 129 SNY------DD--TEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSG--KKFKMTWTDNMSKKSEPRITSYDGKKDYTKV 198 (1388)
T ss_pred ccC------CC--CceeeecccccCCccccccccceEEEEEEECCCC--CEEEEEecCCCcCCCCCccCCCCCCCCceEE
Confidence 332 11 1233467889999988888999999999986 3 2223345432101 1123222111689999
Q ss_pred EEEecCch--hhccCHHH---HHHHHHHhh
Q psy2391 186 TLYLRSKE--EEYLSSWK---LKSIIRKYS 210 (642)
Q Consensus 186 ~l~lk~~~--~e~~~~~~---i~~~i~~ys 210 (642)
+......- ..-++.+. |.+-++..|
T Consensus 199 tF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA 228 (1388)
T PTZ00108 199 TFYPDYAKFGMTEFDDDMLRLLKKRVYDLA 228 (1388)
T ss_pred EEEeCHHHcCCCccChHHHHHHHHHHHHHh
Confidence 88643221 11134455 555555555
No 54
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.60 E-value=0.0045 Score=68.11 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=43.2
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhh
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLS 119 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~ 119 (642)
++..||.||+.++ ...+.|.+..+.+.-.|+|.|||.||+++++...+....+.
T Consensus 335 il~NLl~NA~k~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~---------- 388 (435)
T PRK09467 335 ALANLVVNAARYG----------------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRG---------- 388 (435)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccC----------
Confidence 5677777776553 11234444444333469999999999999987655322111
Q ss_pred cCccccccccccccchhhhhhcc
Q psy2391 120 GDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 120 ~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
+ .... -+.+|+|+.-|-.+
T Consensus 389 -~--~~~~-~~g~GlGL~iv~~i 407 (435)
T PRK09467 389 -D--SARG-SSGTGLGLAIVKRI 407 (435)
T ss_pred -C--CCCC-CCCeehhHHHHHHH
Confidence 1 1111 25689998766444
No 55
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.59 E-value=0.0055 Score=74.34 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=52.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
-++..||+||+.+.. .+.+.|.+..+.+.-.|.|.|||+||+++++...|...-+.
T Consensus 564 qil~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 619 (914)
T PRK11466 564 QVITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV--------- 619 (914)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC---------
Confidence 367889999988852 12334444444333469999999999999988765433211
Q ss_pred hcCccccccccccccchhhhhhcc----cCEEEEEeec
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV----AKKIIVKSRH 152 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v----~~~v~V~Sr~ 152 (642)
....|..|+|+.-|-.+ +-++.|.|..
T Consensus 620 -------~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 620 -------SGKRGGTGLGLTISSRLAQAMGGELSATSTP 650 (914)
T ss_pred -------CCCCCCCcccHHHHHHHHHHcCCEEEEEecC
Confidence 01125789998766443 4457777654
No 56
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=96.56 E-value=0.0029 Score=58.87 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHhhhccCCCCCceeeecccc-cceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeec-CC---------Cc
Q psy2391 258 EQYIEFYKHISHDFEKPLIYTHNHVE-GRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMD-DA---------EQ 326 (642)
Q Consensus 258 e~~~~fy~~~~~~~~~~l~~~~~~~e-g~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d-~~---------~~ 326 (642)
+.....|+. .....|..+....+ +.+.++|++.-|... ..+..+.++.+|||+|+|.+ .. +.
T Consensus 4 ~~i~~v~G~---~~~~~li~i~~~~~~~~~~i~G~is~p~~~----~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~ 76 (132)
T cd03485 4 EALARVLGT---AVAANMVPVQSTDEDPQISLEGFLPKPGSD----VSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSS 76 (132)
T ss_pred HHHHHHhCH---HHHhccEEEeccCCCCcEEEEEEECCCCcC----CCcccCCcEEEEECCeecccchHHHHHHHHHHHH
Confidence 344455544 33345777776652 359999988777332 12446889999999999998 52 22
Q ss_pred --------hhhhhhhceeeeecCCCCCCccc---hhhhc--cChhHHHHHHHH
Q psy2391 327 --------LLPTYLRFVKGVIDSNNLPLNVS---REILQ--ESRDVKVIREGS 366 (642)
Q Consensus 327 --------llP~~l~Fv~Gvvds~dl~lNvS---RE~lq--~~~~l~~i~~~l 366 (642)
-.|.|+.|+. +|+..+|+||+ ||.+- ++.++..|++.+
T Consensus 77 ~~~~~~~~~~P~~~L~i~--~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v 127 (132)
T cd03485 77 AYRKSSLRRYPVFFLNIL--CPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLL 127 (132)
T ss_pred HhccccccCCCEEEEEEE--cCCCceeeccCCccCEEEEcChHHHHHHHHHHH
Confidence 2477888888 99999999997 44333 333555555444
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.52 E-value=0.0086 Score=71.49 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=56.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
-++..||.||+++.. ...+.|.+..+.++ -.|+|.|||+||+++++..-|...-+...
T Consensus 401 qvl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~------ 459 (779)
T PRK11091 401 QILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKD------ 459 (779)
T ss_pred HHHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccC------
Confidence 467899999998852 22345555554333 36899999999999998876655433200
Q ss_pred hhcCccccccccccccchhhhhhcc----cCEEEEEeec
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIV----AKKIIVKSRH 152 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v----~~~v~V~Sr~ 152 (642)
.......|.-|+|+.-|-.+ +-++.|.|..
T Consensus 460 -----~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 460 -----SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred -----CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 01222346678998766443 4567777664
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=96.44 E-value=0.0075 Score=66.73 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhh
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLS 119 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~ 119 (642)
+++.||.||+.+.. ....|.|.... ..|+|.|||.||+++++...+.+.-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 67888899888852 12245555433 379999999999999988755432221
Q ss_pred cCccccccccccccchhhhhhcc
Q psy2391 120 GDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 120 ~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
+....+..|+|+.-|-.+
T Consensus 408 -----~~~~~~g~GlGL~iv~~i 425 (449)
T PRK10337 408 -----PGQEATGSGLGLSIVRRI 425 (449)
T ss_pred -----CCCCCCccchHHHHHHHH
Confidence 011224589998766544
No 59
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.38 E-value=0.0071 Score=72.87 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=51.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEc-------------CCC--CEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFD-------------KDN--RTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d-------------~~~--~~i~I~DnGiGMt~~el~~~l 103 (642)
-++..||.||+.+... ...+.|.+... ..+ -.|.|.|||+||+++++...|
T Consensus 563 qvl~NLl~NAik~~~~--------------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF 628 (828)
T PRK13837 563 QVLMNLCSNAAQAMDG--------------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF 628 (828)
T ss_pred HHHHHHHHHHHHHccc--------------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh
Confidence 4588999999998631 22344444443 112 268999999999999887644
Q ss_pred HHHHhccchhhHhhhhcCccccccccccccchhhhhhcc----cCEEEEEeec
Q psy2391 104 GTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIV----AKKIIVKSRH 152 (642)
Q Consensus 104 ~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v----~~~v~V~Sr~ 152 (642)
...-++ . . +..|+|++-|-.+ +-++.|.|..
T Consensus 629 e~F~~~--------------~-~---~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 629 EPFFTT--------------R-A---GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred CCcccC--------------C-C---CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 221110 1 1 6789998766443 4557777653
No 60
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.38 E-value=0.007 Score=68.61 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=34.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l 103 (642)
-++.+||.||+.+... ...+.|.+..+.++ -.|.|+|||+||+.+++...+
T Consensus 503 ~~~~nli~na~~~~~~--------------~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 503 QVLLNILINAVQAISA--------------RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHHhcC--------------CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 3577888888887521 12234444444444 579999999999999887544
No 61
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.34 E-value=0.012 Score=64.91 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=47.3
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||+||+.+.. ..+.|.+..+.+.-.|+|.|||+||+++++...+...-+.
T Consensus 356 ~~l~nli~NA~~~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~--------- 410 (461)
T PRK09470 356 SALENIVRNALRYSH----------------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRV--------- 410 (461)
T ss_pred HHHHHHHHHHHHhCC----------------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccC---------
Confidence 358889999887641 1345666555544579999999999999887655322111
Q ss_pred hcCccccccccccccchhhhhhc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFI 141 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~ 141 (642)
+ ......-+.+|+|++-+=.
T Consensus 411 --~-~~~~~~~~g~GlGL~iv~~ 430 (461)
T PRK09470 411 --D-EARDRESGGTGLGLAIVEN 430 (461)
T ss_pred --C-cccCCCCCCcchhHHHHHH
Confidence 0 0112233678999876533
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=96.30 E-value=0.0081 Score=72.97 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=46.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
-++..||+||+.+.. ....+.|.+..+.+.-.|+|.|||.||+++++...|...-+.
T Consensus 781 qVL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~--------- 837 (895)
T PRK10490 781 RVLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARG--------- 837 (895)
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccC---------
Confidence 468899999988852 112234444433333468999999999999887655332111
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
......+..|+|++-|-.+
T Consensus 838 -----~~~~~~~G~GLGL~Ivk~i 856 (895)
T PRK10490 838 -----NKESAIPGVGLGLAICRAI 856 (895)
T ss_pred -----CCCCCCCCccHHHHHHHHH
Confidence 0111224578998776544
No 63
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=96.24 E-value=0.0035 Score=57.15 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=64.1
Q ss_pred HHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC--------------
Q psy2391 259 QYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA-------------- 324 (642)
Q Consensus 259 ~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~-------------- 324 (642)
.....|+... ...|..++.... .+.++|++.-|... +..+..+.+|||+|+|.+..
T Consensus 4 ~i~~v~G~~~---~~~l~~i~~~~~-~~~i~G~is~~~~~------~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~ 73 (122)
T cd00782 4 RIAQVYGKEV---AKNLIEVELESG-DFRISGYISKPDFG------RSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLP 73 (122)
T ss_pred HHHHHcCHHH---HhcceEEeccCC-CEEEEEEEECchhh------cCCCccEEEEECCeEecCHHHHHHHHHHHHHhCc
Confidence 3445554422 234666665544 49999988777642 55788999999999998652
Q ss_pred CchhhhhhhceeeeecCCCCCCccch---hhh-c-cChhHHHHHHHHH
Q psy2391 325 EQLLPTYLRFVKGVIDSNNLPLNVSR---EIL-Q-ESRDVKVIREGST 367 (642)
Q Consensus 325 ~~llP~~l~Fv~Gvvds~dl~lNvSR---E~l-q-~~~~l~~i~~~l~ 367 (642)
..-.|.|+.||+ ++++.+|+||.= |.. + ++.++..|++.+.
T Consensus 74 ~~~~P~~~L~i~--~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~ 119 (122)
T cd00782 74 KGRYPVFVLNLE--LPPELVDVNVHPTKREVRFSDEEEVLELIREALR 119 (122)
T ss_pred CCCCcEEEEEEE--eChhheeeeeCCCCCEEEecCHHHHHHHHHHHHH
Confidence 134588999999 999999999964 322 2 3335555554443
No 64
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=96.20 E-value=0.0048 Score=58.21 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=45.9
Q ss_pred cceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC-------------CchhhhhhhceeeeecCCCCCCccch
Q psy2391 284 GRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA-------------EQLLPTYLRFVKGVIDSNNLPLNVSR 350 (642)
Q Consensus 284 g~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~-------------~~llP~~l~Fv~Gvvds~dl~lNvSR 350 (642)
+.+.++|++.-|... ..+.++..+.+|||+|+|.++. .+-.|.++.+|. ||++.+|+||.=
T Consensus 43 ~~~~i~G~is~p~~~----~~r~~~~~q~~fVN~R~V~~~~l~~aI~~~y~~~~~~~~P~~vL~i~--vp~~~vDvNVhP 116 (142)
T cd03484 43 SEVKITGYISKPSHG----CGRSSSDRQFFYINGRPVDLKKVAKLINEVYKSFNSRQYPFFILNIS--LPTSLYDVNVTP 116 (142)
T ss_pred CcEEEEEEECCCccc----CCCCCCCcEEEEECCeecCCHHHHHHHHHHHHHhcCcCCcEEEEEEE--eCCcceeeeeCC
Confidence 458999988767221 1245678899999999998763 223488888888 999999999963
No 65
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.20 E-value=0.013 Score=70.94 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=51.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCC--C-CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKD--N-RTINISDNGIGMNRNDIITNLGTIAKSGTQEFF 115 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~--~-~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~ 115 (642)
-++.-||+||+.+.. .+.+.|.+..... + -.|+|.|||+||+++++..-+...-+. +
T Consensus 568 QVL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~-~---- 627 (894)
T PRK10618 568 KILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQ-T---- 627 (894)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccC-C----
Confidence 457889999998852 1233444443322 2 268999999999999988755433221 0
Q ss_pred hhhhcCccccccccccccchhhhhhcc----cCEEEEEeec
Q psy2391 116 SKLSGDQKKDASLIGQFGVGFYSAFIV----AKKIIVKSRH 152 (642)
Q Consensus 116 ~~~~~~~~~~~~~iG~fGiGf~S~f~v----~~~v~V~Sr~ 152 (642)
.....-+..|+|+.-|--+ +-++.|.|..
T Consensus 628 --------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~ 660 (894)
T PRK10618 628 --------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSRE 660 (894)
T ss_pred --------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECC
Confidence 0111224568888665433 4456666654
No 66
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.18 E-value=0.0036 Score=72.21 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=83.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--H---------HHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT--N---------LGTIA 107 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~--~---------l~~ia 107 (642)
-.+.|+|-||+|-... ++ ......|.|+++ ++.|+|+|||-||+-+--.. . |+++-
T Consensus 48 hi~~EIldNavDe~~~-------~~----~g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TN----FKFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhhc-------cC----CCCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 4578999999996321 00 012457888887 56899999999998642211 0 12222
Q ss_pred hccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEE
Q psy2391 108 KSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITL 187 (642)
Q Consensus 108 ~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l 187 (642)
++|+ | . + .-.-.-|.-|+|.-.+=+++++++|+++..+ ......|.. |-....+...+...+||+|+.
T Consensus 115 aGgk--F----d-~--~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~--~~~~q~f~~-G~~~~~~~~~~~~~~GT~V~F 182 (602)
T PHA02569 115 AGSN--F----D-D--TNRVTGGMNGVGSSLTNFFSVLFIGETCDGK--NEVTVNCSN-GAENISWSTKPGKGKGTSVTF 182 (602)
T ss_pred cccc--c----C-C--cceeeCCcCCccceeeeccchhhheEEEcCC--EEEEEEecC-CcccCCcccCCCCCCccEEEE
Confidence 2222 1 0 1 1223468899999888888899999886532 111223321 111111111123368999988
Q ss_pred EecCch---hhccC---HHHHHHHHHHhhccCCCCeEe
Q psy2391 188 YLRSKE---EEYLS---SWKLKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 188 ~lk~~~---~e~~~---~~~i~~~i~~ys~~l~~pI~~ 219 (642)
....+- ..| + ...|.+-++..| |+.--+.+
T Consensus 183 ~PD~~iF~~~~~-~~~~~~~l~~Rl~elA-~Ln~Gl~I 218 (602)
T PHA02569 183 IPDFSHFEVNGL-DQQYLDIILDRLQTLA-VVFPDIKF 218 (602)
T ss_pred EECHHHhCCCcc-CccHHHHHHHHHHHHh-cCCCCCEE
Confidence 654321 112 2 244555555554 44433444
No 67
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=96.15 E-value=0.0055 Score=57.69 Aligned_cols=95 Identities=9% Similarity=0.112 Sum_probs=63.8
Q ss_pred HHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC---------C----
Q psy2391 259 QYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA---------E---- 325 (642)
Q Consensus 259 ~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~---------~---- 325 (642)
....+|+. .....|..+....++ +.++|++..|.+ .++..+.+|||+|+|.+.. +
T Consensus 5 ~i~~i~G~---~~~~~l~~v~~~~~~-~~v~G~is~p~~--------~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~ 72 (141)
T cd03486 5 VFKQIYGL---VLAQKLKEVSAKFQE-YEVSGYISSEGH--------YSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSA 72 (141)
T ss_pred HHHHHhCh---hhhccEEEeecccCc-EEEEEEEcCCCC--------CCCceEEEEECCEEechHHHHHHHHHHHhhccc
Confidence 34455544 333457777766554 999998877763 2678899999999997652 2
Q ss_pred --------------------chhhhhhhceeeeecCCCCCCccch---h-hhcc-ChhHHHHHHHHH
Q psy2391 326 --------------------QLLPTYLRFVKGVIDSNNLPLNVSR---E-ILQE-SRDVKVIREGST 367 (642)
Q Consensus 326 --------------------~llP~~l~Fv~Gvvds~dl~lNvSR---E-~lq~-~~~l~~i~~~l~ 367 (642)
+-.|.++.||. +|++.+|+||.= | .|++ +.++..|++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~P~~vL~i~--~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~ 137 (141)
T cd03486 73 VAKNKSSPQSKSSRRGKRSQESYPVFVLNIT--CPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVK 137 (141)
T ss_pred cccccccccccccccccCCccCCCEEEEEEe--cCchHheeeeCCceeEEEecChHHHHHHHHHHHH
Confidence 23588999999 999999999963 3 2333 234455554443
No 68
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.97 E-value=0.019 Score=69.52 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=52.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEc--CCC---CEEEEEeCCCCCCHHHHHHHHHHHHhccchh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFD--KDN---RTINISDNGIGMNRNDIITNLGTIAKSGTQE 113 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d--~~~---~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~ 113 (642)
-++..||+||+.+.. ...+.|.+... .++ -.|+|.|||+||+++++...+...-+...
T Consensus 411 ~vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-- 473 (919)
T PRK11107 411 QIITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA-- 473 (919)
T ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCC--
Confidence 467899999998852 12344555432 222 25899999999999998876644322110
Q ss_pred hHhhhhcCccccccccccccchhhhhhcc----cCEEEEEeec
Q psy2391 114 FFSKLSGDQKKDASLIGQFGVGFYSAFIV----AKKIIVKSRH 152 (642)
Q Consensus 114 f~~~~~~~~~~~~~~iG~fGiGf~S~f~v----~~~v~V~Sr~ 152 (642)
......|..|+|++-|-.+ +-++.|.|..
T Consensus 474 ----------~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 474 ----------SISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred ----------CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 1122346789998766443 3446666553
No 69
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.95 E-value=0.0074 Score=57.99 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=51.7
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
..++.|++.||+..+.+. .....+.|.+....+.-.|.|+|+|.||+.+.+...+.. .... .
T Consensus 44 ~lav~Ea~~Nai~Hg~~~-----------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~~----~ 105 (161)
T PRK04069 44 KIAVSEACTNAVQHAYKE-----------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDIS----K 105 (161)
T ss_pred HHHHHHHHHHHHHhccCC-----------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCCC----C
Confidence 468999999999997321 011234555555544457999999999997766533210 0000 0
Q ss_pred hhcCccccccccccccchhhhhhcccCEEEEEe
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKS 150 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~S 150 (642)
..+... .-|.|++-+=.++|++.+.+
T Consensus 106 -----~~~~~~--~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 106 -----PIEDLR--EGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred -----cccccC--CCceeHHHHHHHHHhEEEEc
Confidence 001111 23777766666778887764
No 70
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.88 E-value=0.021 Score=69.77 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=47.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
-++.-||+||+.+.. ...+.|.+..+.+.-.|+|.|||+||+++++...+...-+.+.
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------- 622 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-------
Confidence 468889999998852 1234455544433346899999999999998876543322110
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
......+..|+|+.-|-.+
T Consensus 623 -----~~~~~~~GtGLGL~I~k~l 641 (924)
T PRK10841 623 -----GVQRNFQGTGLGLAICEKL 641 (924)
T ss_pred -----CCCCCCCCeehhHHHHHHH
Confidence 1111234678998766544
No 71
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.84 E-value=0.0098 Score=70.40 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=90.4
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH-------HHHHHHhcc
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT-------NLGTIAKSG 110 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~-------~l~~ia~Sg 110 (642)
...+.|+|.||+|=... ...-.|.|.++.+ +.|+|+|||-||+-+--.. .+.++..+|
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~~~~I~V~i~~D-gsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GECNKITVVLHKD-GSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CCCcEEEEEEcCC-CeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 34688999999994311 1244788888764 6899999999998743221 111222232
Q ss_pred chhhHhh---hh-c----------------------------Cc--cccccccccccchhhhhhcccCEEEEEeecCCCC
Q psy2391 111 TQEFFSK---LS-G----------------------------DQ--KKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSP 156 (642)
Q Consensus 111 ~~~f~~~---~~-~----------------------------~~--~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~ 156 (642)
.+ |-.. +. + +. ..=.-.-|.-|||.-.+=++++.++|.+++.|
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG-- 272 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG-- 272 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC--
Confidence 21 1000 00 0 00 00023567889999888889999999999865
Q ss_pred CCceEEEEEeCCc---ceEEEecCCCCCccEEEEEec-Cc-hhh-c--------------cCHHHHHHHHHHhhccCCCC
Q psy2391 157 ITEGVLWESEGSG---NFTIETINKTNRGTDITLYLR-SK-EEE-Y--------------LSSWKLKSIIRKYSDHISFP 216 (642)
Q Consensus 157 ~~~~~~w~~~~~~---~~~v~~~~~~~~GT~I~l~lk-~~-~~e-~--------------~~~~~i~~~i~~ys~~l~~p 216 (642)
. -|.-+...+. ...+.......+||+|+.... +. ... . ++...|++-++.+| ||..-
T Consensus 273 K--~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA-fLNpG 349 (903)
T PTZ00109 273 K--IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELS-YLNPG 349 (903)
T ss_pred E--EEEEEeCCCcccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHh-ccCCC
Confidence 2 2332222221 112212221368999988655 32 111 0 24567888788777 45544
Q ss_pred eEee
Q psy2391 217 IKMY 220 (642)
Q Consensus 217 I~~~ 220 (642)
+.+.
T Consensus 350 L~I~ 353 (903)
T PTZ00109 350 LTFY 353 (903)
T ss_pred cEEE
Confidence 5553
No 72
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.60 E-value=0.057 Score=49.83 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=29.1
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCC
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMN 95 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt 95 (642)
..++.||++||+.+. +. . .....+.|.+....+.-.|.|.|+|.||+
T Consensus 41 ~~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 41 KTAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 467999999998653 10 0 01122344444433334689999999997
No 73
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.55 E-value=0.018 Score=65.00 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=40.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHHHHHhc
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--DKDNRTINISDNGIGMNRNDIITNLGTIAKS 109 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d~~~~~i~I~DnGiGMt~~el~~~l~~ia~S 109 (642)
-+|-=||+||.||++- ..+.+|.|.. +.+.-.|+|.|||.|+.++-+...|...-++
T Consensus 500 QVLvNLl~NALDA~~~--------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 500 QVLVNLLQNALDAMAG--------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 3455699999999842 2344555554 4344479999999999999888776555444
No 74
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.49 E-value=0.028 Score=66.59 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=47.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++..||.||..+.. +...+.|.+..+.+.-.|+|.|||.||+++++...+...-+. +.
T Consensus 600 ~il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~-~~------ 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSV-RD------ 658 (703)
T ss_pred HHHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeec-CC------
Confidence 457889999998862 122234444444333469999999999999988655432221 00
Q ss_pred hcCccccccccccccchhhhhhccc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVA 143 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~ 143 (642)
.....-+..|+|++-|-.++
T Consensus 659 -----~~~~~~~g~GLGL~Ivr~Iv 678 (703)
T TIGR03785 659 -----QGAQDQPHLGLGLYIVRLIA 678 (703)
T ss_pred -----CCCCCCCCccHHHHHHHHHH
Confidence 11111235899998775553
No 75
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.44 E-value=0.018 Score=59.06 Aligned_cols=48 Identities=29% Similarity=0.393 Sum_probs=35.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~~~l 103 (642)
.++..||.||.+|+. ...|.|.....+ -.|+|.|||.||+++.+...+
T Consensus 231 ~vl~nLi~NAi~~~~-----------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if 280 (336)
T COG0642 231 QVLVNLLSNAIKYTP-----------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERIF 280 (336)
T ss_pred HHHHHHHHHHhccCC-----------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhc
Confidence 478999999999972 234555543332 479999999999999966543
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=95.40 E-value=0.036 Score=69.40 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=45.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE---cCCCC--EEEEEeCCCCCCHHHHHHHHHHHHhccchh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF---DKDNR--TINISDNGIGMNRNDIITNLGTIAKSGTQE 113 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~---d~~~~--~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~ 113 (642)
-++..||.||+++.. ...+.|.+.. +.+.. .|+|.|||+||+++++...+...-+.
T Consensus 831 qvl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~---- 891 (1197)
T PRK09959 831 QVLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQT---- 891 (1197)
T ss_pred HHHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccc----
Confidence 468899999999963 1123444432 22222 47999999999999988655332221
Q ss_pred hHhhhhcCccccccccccccchhhhhhcc
Q psy2391 114 FFSKLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 114 f~~~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.....-+..|+|++-|-.+
T Consensus 892 ----------~~~~~~~G~GLGL~i~~~i 910 (1197)
T PRK09959 892 ----------SAGRQQTGSGLGLMICKEL 910 (1197)
T ss_pred ----------ccCCCCCCcCchHHHHHHH
Confidence 0111224689998766444
No 77
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=95.39 E-value=0.032 Score=62.50 Aligned_cols=73 Identities=25% Similarity=0.314 Sum_probs=49.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR--TINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~--~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
+.|.=||.||.||..+ ..+.-+|.+.+...+. .|.|.|||+||+++.... +-..|.|.+.
T Consensus 430 tIlGNLidNA~eA~~~-------------~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk~---- 491 (537)
T COG3290 430 TILGNLIDNALEALLA-------------PEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTKN---- 491 (537)
T ss_pred HHHHHHHHHHHHHhhc-------------cCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCccccC----
Confidence 5567799999999852 1223467766644443 589999999999988774 4344555221
Q ss_pred hhhcCccccccccccccchhhhhhc
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFI 141 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~ 141 (642)
-|.-|+|+|=+=.
T Consensus 492 ------------~~~rGiGL~Lvkq 504 (537)
T COG3290 492 ------------TGGRGIGLYLVKQ 504 (537)
T ss_pred ------------CCCCchhHHHHHH
Confidence 4678999876533
No 78
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.26 E-value=0.034 Score=53.32 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=52.8
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
..++.|++.||+...-. . .....+.|.+..+.+.-.|.|+|+|.|++.+.+...+. ....
T Consensus 44 ~lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~------ 103 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG------ 103 (159)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC------
Confidence 46899999999988621 0 11223445555544444689999999999776553221 1000
Q ss_pred hhcCccccccccccccchhhhhhcccCEEEEEe
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKS 150 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~S 150 (642)
.........-|.|++-+=.++|++.+.+
T Consensus 104 -----~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 -----SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred -----CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111234888887878889988875
No 79
>PRK03660 anti-sigma F factor; Provisional
Probab=94.84 E-value=0.15 Score=47.61 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=30.1
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCH
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNR 96 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~ 96 (642)
..++.|++.||+...-. . .....+.|.+....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~~~----~-------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHGYE----N-------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHhcC----C-------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 46789999999865310 0 001234455444433346899999999975
No 80
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.70 E-value=0.06 Score=48.79 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=52.6
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
..++.|++.||+.....- .....+.|.+..+..+-.|+|.|+|.|++...+.... .
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~-------~------ 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPD-------P------ 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcc-------c------
Confidence 468999999999997421 0112344555556555579999999999886554211 0
Q ss_pred hhcCccccccccccccchhhhhhcccCEEEE
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVAKKIIV 148 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V 148 (642)
........-|.|++-+-.++|++.+
T Consensus 89 ------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0112334556777667778899988
No 81
>PRK13557 histidine kinase; Provisional
Probab=94.69 E-value=0.07 Score=60.01 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhc----ccCEEEEEeec
Q psy2391 84 TINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFI----VAKKIIVKSRH 152 (642)
Q Consensus 84 ~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~----v~~~v~V~Sr~ 152 (642)
.|+|.|||.||+++.....|...-+. ....+..|+|++-+-. .+-++.|.|..
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if~~~~~~----------------~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVMDPFFTT----------------KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred EEEEEcCCCCCCHHHHHhccCCCccc----------------CCCCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 69999999999998877544221110 1112467888865532 44567776654
No 82
>PRK09835 sensor kinase CusS; Provisional
Probab=94.64 E-value=0.051 Score=60.48 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=34.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLG 104 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~ 104 (642)
.++.+||.||+.+.. +...+.|.+..+.+.-.|+|.|||.||+++++...+.
T Consensus 378 ~vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~ 429 (482)
T PRK09835 378 RAISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFD 429 (482)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC
Confidence 557788888777752 1122444444444444799999999999999886553
No 83
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.57 E-value=0.18 Score=59.11 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=33.9
Q ss_pred HHHHHhcHHHHhHh----hhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHH
Q psy2391 41 LRELISNASDALDK----LRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDIIT 101 (642)
Q Consensus 41 lRELIqNA~DA~~~----~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~~ 101 (642)
|..||.||+|++-. |+... ......|.|.....+ -.|+|.|||.||+++.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~g--------kp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAG--------KNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcC--------CCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 56899999999732 11110 011234655543333 3689999999999988764
No 84
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=93.81 E-value=0.16 Score=57.71 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=39.2
Q ss_pred HHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHH
Q psy2391 43 ELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR--TINISDNGIGMNRNDIITNLG 104 (642)
Q Consensus 43 ELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~--~i~I~DnGiGMt~~el~~~l~ 104 (642)
-||+||.+|++.+.... .+...|+++.+..+. .+.|.|||.|.+.+++.+.+.
T Consensus 607 NliKNA~EAi~~~~~~e---------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 607 NLLKNAAEAIEAVEAEE---------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHhHHHHhhhccccc---------CCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 48999999998754321 112267888766554 689999999999999987663
No 85
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=93.47 E-value=0.12 Score=55.09 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=32.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcC-------CC-----CEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDK-------DN-----RTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~-------~~-----~~i~I~DnGiGMt~~el~~~l 103 (642)
-++..||+||+.|... ....|.|.... ++ -.|.|.|||.||+++.....|
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF 301 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLF 301 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhcc
Confidence 5688999999999721 12234443311 11 258999999999998776543
No 86
>KOG0787|consensus
Probab=92.74 E-value=0.57 Score=50.43 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=71.5
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
.-.+-||..||..|.-+.... .. .+-+++.|.|....++-+|.|+|-|-|++.+++...| .-..|.... .
T Consensus 262 ~ymlfElfKNamrATve~h~~-----~~-~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf-~Y~ySTa~~---~ 331 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGD-----DG-DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLF-SYMYSTAPA---P 331 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----CC-CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHH-hhhcccCCC---C
Confidence 356899999999997432111 00 1123445555545555689999999999999988644 344442211 0
Q ss_pred hhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEecCchhhc
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRSKEEEY 196 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk~~~~e~ 196 (642)
..+ ......+..||.|+--+=.. .+.. +|...+.. -++.||-+.++||..+.+.
T Consensus 332 -~~d-~~~~~plaGfG~GLPisrlY-------a~yf--------------~Gdl~L~S--leG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 332 -SSD-NNRTAPLAGFGFGLPISRLY-------ARYF--------------GGDLKLQS--LEGIGTDVYIYLKALSMEA 385 (414)
T ss_pred -CCC-CCCcCcccccccCCcHHHHH-------HHHh--------------CCCeeEEe--eeccccceEEEeccCCccc
Confidence 001 11245667788886433222 1111 12222322 3488999999999776554
No 87
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=92.37 E-value=0.55 Score=55.28 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=51.9
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
+-+|-=||.||.-.. .+...++|.+..+.+.-.+.|.|||-|++.+++.+-|-+..+-++.
T Consensus 777 eQVLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~----- 837 (890)
T COG2205 777 EQVLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKE----- 837 (890)
T ss_pred HHHHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC-----
Confidence 345667899988664 2233456666666655689999999999999999988777664321
Q ss_pred hhcCccccccccccccchhhhhhcc
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
++ ...-|.|++-|-.+
T Consensus 838 ------~~---~~G~GLGLsIc~~i 853 (890)
T COG2205 838 ------SA---TRGVGLGLAICRGI 853 (890)
T ss_pred ------CC---CCCccccHHHHHHH
Confidence 11 34557777666443
No 88
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.87 E-value=0.25 Score=50.15 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=31.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNR 96 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~ 96 (642)
.++-||++||.-... ++ .+...++|.+..+.++ ..++|+|||.|++.
T Consensus 125 liv~EL~tNa~Khaf------~~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 125 LIVHELVTNALKHAF------LS-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHHhcC------CC-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 468899999998863 11 1233344555555554 47999999999885
No 89
>PRK13560 hypothetical protein; Provisional
Probab=91.71 E-value=0.21 Score=59.19 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=30.8
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCC--C-CEEEEEeCCCCCCHH
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKD--N-RTINISDNGIGMNRN 97 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~--~-~~i~I~DnGiGMt~~ 97 (642)
++.+|++||+.+... ......|.|..... + -.|+|.|||+||+++
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999998521 11234566554333 2 268999999999974
No 90
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=90.99 E-value=0.39 Score=41.81 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=45.2
Q ss_pred CceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeee-cCC---------Cch--------hhhhhhce
Q psy2391 274 PLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIM-DDA---------EQL--------LPTYLRFV 335 (642)
Q Consensus 274 ~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~-d~~---------~~l--------lP~~l~Fv 335 (642)
.+..+....+ .+.++|++..|... +..+..+.+|||++++. +.. ... .|.++.++
T Consensus 16 ~~~~~~~~~~-~~~v~g~l~~~~~~------~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~~~~~~~p~~vl~i 88 (107)
T cd00329 16 KLIYVEGESD-GFRVEGAISYPDSG------RSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNGDDVRRYPVAVLSL 88 (107)
T ss_pred hcEEEeccCC-CEEEEEEEeCCccC------cccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 3555655544 48999988777643 34578899999999998 432 222 24455555
Q ss_pred eeeecCCCCCCccc
Q psy2391 336 KGVIDSNNLPLNVS 349 (642)
Q Consensus 336 ~Gvvds~dl~lNvS 349 (642)
+ ++++.+++||+
T Consensus 89 ~--~~~~~~d~nv~ 100 (107)
T cd00329 89 K--IPPSLVDVNVH 100 (107)
T ss_pred E--eChHHeeeCCC
Confidence 5 88877888875
No 91
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.86 E-value=0.22 Score=56.61 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN 97 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~ 97 (642)
++.|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+++
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 46788888887642 12234444433333469999999999853
No 92
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.75 E-value=0.29 Score=57.87 Aligned_cols=122 Identities=22% Similarity=0.330 Sum_probs=72.3
Q ss_pred HHHHHhcHHHHhH----hhhhhhhcccccCCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHHHHHhccchhh
Q psy2391 41 LRELISNASDALD----KLRFELINNKFISTDNSDLEIIITFDKDNR--TINISDNGIGMNRNDIITNLGTIAKSGTQEF 114 (642)
Q Consensus 41 lRELIqNA~DA~~----~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~--~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f 114 (642)
|.=||=||+|.+- .|+.. +..+...|.+.....++ .|.|+|+|-||+++-+...- -..|--
T Consensus 437 L~HLvRNAvDHGIE~pE~R~a~--------GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KA---iErGli-- 503 (716)
T COG0643 437 LTHLVRNAVDHGIETPEERRAA--------GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKA---IERGLI-- 503 (716)
T ss_pred HHHHHhcchhccCCCHHHHHHc--------CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHH---HHcCCC--
Confidence 6678999999983 22221 23445688888655443 58999999999999887522 111210
Q ss_pred HhhhhcCcccccccccc---ccchhhhhhcccCEEEEEeecCCCCCCceEE-----EEEeCCcceEEEecCCCCCccEEE
Q psy2391 115 FSKLSGDQKKDASLIGQ---FGVGFYSAFIVAKKIIVKSRHVNSPITEGVL-----WESEGSGNFTIETINKTNRGTDIT 186 (642)
Q Consensus 115 ~~~~~~~~~~~~~~iG~---fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~-----w~~~~~~~~~v~~~~~~~~GT~I~ 186 (642)
.. .....+.. +.+=|.+.|.-+++|+=.|.+. .|.. .+. -+|..+|.. ..+.||+++
T Consensus 504 ----~~---~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGRG-----VGMDVVk~~I~~-LgG~I~V~S--~~G~GT~Ft 568 (716)
T COG0643 504 ----TE---EEAETLSDEEILNLIFAPGFSTAEQVTDVSGRG-----VGMDVVKTNIEQ-LGGSISVSS--EPGKGTTFT 568 (716)
T ss_pred ----Ch---HHhccCCHHHHHHHHhcCCCCcchhhhcccCCc-----cCHHHHHHHHHH-cCCEEEEEe--cCCCCeEEE
Confidence 00 00001122 2233888899999997777652 2211 111 145555543 569999999
Q ss_pred EEec
Q psy2391 187 LYLR 190 (642)
Q Consensus 187 l~lk 190 (642)
|.|=
T Consensus 569 i~LP 572 (716)
T COG0643 569 IRLP 572 (716)
T ss_pred EecC
Confidence 9864
No 93
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=90.70 E-value=0.9 Score=43.06 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=53.2
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
.+++-|++.||+.+.-+. . .+...+.|.+..+.+.-.++|+|.|.|+. ++...++.-
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~----~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~----------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------D----PSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG----------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------C----CCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC-----------
Confidence 588999999999997431 0 11134555555666656899999997655 444433211
Q ss_pred hhcCccccccccccc---cchhhhhhcccCEEEEEeecC
Q psy2391 118 LSGDQKKDASLIGQF---GVGFYSAFIVAKKIIVKSRHV 153 (642)
Q Consensus 118 ~~~~~~~~~~~iG~f---GiGf~S~f~v~~~v~V~Sr~~ 153 (642)
....+.- |.|++-+=.+.|+|.+.....
T Consensus 99 --------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~~ 129 (146)
T COG2172 99 --------DTTAEGLQEGGLGLFLAKRLMDEFSYERSED 129 (146)
T ss_pred --------CCCCcccccccccHHHHhhhheeEEEEeccC
Confidence 1122233 777766666789998885543
No 94
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.46 E-value=0.26 Score=56.72 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=28.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN 97 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~ 97 (642)
-.++|+|.||..+.. ...+.|.+..+.+.-.|+|.|||+||+++
T Consensus 472 ~il~ell~NA~kha~---------------a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 472 QIAREALSNALKHAQ---------------ASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 348888888776641 12234444444333469999999999974
No 95
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=89.21 E-value=0.43 Score=53.54 Aligned_cols=43 Identities=26% Similarity=0.559 Sum_probs=30.0
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN 97 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~ 97 (642)
.+||-++||.-.-. +..+.|.+....+..+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~---------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ---------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc---------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 48999999986631 22344455445544589999999999863
No 96
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.77 E-value=0.55 Score=50.95 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=32.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN 97 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~ 97 (642)
-+++|.|.||.-... +....|.+..+.+.-.|+|.|||.|.+.+
T Consensus 282 rivQEaltN~~rHa~---------------A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~ 325 (365)
T COG4585 282 RIVQEALTNAIRHAQ---------------ATEVRVTLERTDDELRLEVIDNGVGFDPD 325 (365)
T ss_pred HHHHHHHHHHHhccC---------------CceEEEEEEEcCCEEEEEEEECCcCCCcc
Confidence 579999999987752 23455666655555589999999998753
No 97
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=86.46 E-value=2.2 Score=49.06 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=41.9
Q ss_pred CceEEEEEcC--CCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhccc----C
Q psy2391 71 DLEIIITFDK--DNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVA----K 144 (642)
Q Consensus 71 ~~~I~I~~d~--~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~----~ 144 (642)
...|.|..+. +..++.|.|||+|+++.-+.+-|.-.-+-+ ......| -|+|+.-|-.++ -
T Consensus 656 ~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~-------------s~~~y~g-tG~GL~I~kkI~e~H~G 721 (750)
T COG4251 656 NPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH-------------SRDEYLG-TGLGLAICKKIAERHQG 721 (750)
T ss_pred CCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC-------------chhhhcC-CCccHHHHHHHHHHhCc
Confidence 3567776543 345899999999999988776554322211 2233445 899987764432 3
Q ss_pred EEEEEee
Q psy2391 145 KIIVKSR 151 (642)
Q Consensus 145 ~v~V~Sr 151 (642)
++.|.|+
T Consensus 722 ~i~vEs~ 728 (750)
T COG4251 722 RIWVEST 728 (750)
T ss_pred eEEEeec
Confidence 4556665
No 98
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=84.38 E-value=1.5 Score=48.40 Aligned_cols=53 Identities=28% Similarity=0.159 Sum_probs=38.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC---CEEEEEeCCCCCCHHHHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN---RTINISDNGIGMNRNDIITNLGTI 106 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~---~~i~I~DnGiGMt~~el~~~l~~i 106 (642)
-++--|+-||+|||.. .++.|.+..+... -.|-|.|||-|-+-+-+.+.|...
T Consensus 567 QVlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PF 622 (673)
T COG4192 567 QVLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPF 622 (673)
T ss_pred HHHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCc
Confidence 4566799999999952 2468888876532 379999999999987666655433
No 99
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=83.14 E-value=2.3 Score=45.71 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=38.7
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhh
Q psy2391 72 LEIIITFDKDN--RTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSA 139 (642)
Q Consensus 72 ~~I~I~~d~~~--~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~ 139 (642)
.+|.+.+..-+ -.|+|.|+|.|++++++.+-|.++-+-.+ +.....|.-|.|++-+
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk------------ARsR~~gGTGLGLaIa 419 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK------------ARSRKMGGTGLGLAIA 419 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh------------hhhhcCCCCchhHHHH
Confidence 36666654433 36899999999999999998876644311 1234567788998644
No 100
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=82.74 E-value=3.2 Score=46.70 Aligned_cols=56 Identities=25% Similarity=0.340 Sum_probs=40.0
Q ss_pred CCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHH
Q psy2391 34 YSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDIIT 101 (642)
Q Consensus 34 Ys~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~~ 101 (642)
+-+|...+-=||.||+-|+-+. ..+...|.|.....+ -.++|.|||.||++.-...
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 5578888999999999998432 122346666653333 3689999999999976653
No 101
>KOG0355|consensus
Probab=81.62 E-value=2 Score=50.56 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=71.6
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHHHHHh
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDII--------TNLGTIAK 108 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~--------~~l~~ia~ 108 (642)
-.-..-|.+-||.| .. | +..--.|.+.++++...|.|.+||-|+.-+... ..++..-+
T Consensus 54 l~ki~dEilvNaad-k~--r-----------d~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llt 119 (842)
T KOG0355|consen 54 LYKIFDEILVNAAD-KQ--R-----------DPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLT 119 (842)
T ss_pred HHHHHHHHhhcccc-cc--c-----------CCCcceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhh
Confidence 34567899999999 32 1 122347888889999999999999999865432 23566666
Q ss_pred ccchhhHhhhhcCccccccccccccchh--hhhhcccCEEEEEeecCCCCCCceEEEEEeC---CcceEEEecCCCCCcc
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGF--YSAFIVAKKIIVKSRHVNSPITEGVLWESEG---SGNFTIETINKTNRGT 183 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf--~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~---~~~~~v~~~~~~~~GT 183 (642)
|+.- ..+ ...-.-|+-|.|. .-.|..---+++..+..+ -.....|...- .+.+ +.+. ..+.+|
T Consensus 120 ssny------~d~--ekK~tggrngygakLcniFs~~f~~Et~d~~~~--~~~kQ~w~~nm~~~~~~~-i~~~-~~~~yT 187 (842)
T KOG0355|consen 120 SSNY------DDD--EKKVTGGRNGYGAKLCNIFSTEFTVETADREYK--MAFKQTWINNMTRDEEPK-IVPS-TDEDYT 187 (842)
T ss_pred cccc------CCC--ccccccCCCccceeeeeeccccceeeeeehHhH--HHHHHhhhcCCcccCCce-eecC-CCCCcc
Confidence 6532 111 1222335555554 444544444444444443 23344576543 2222 2222 234499
Q ss_pred EEEEE
Q psy2391 184 DITLY 188 (642)
Q Consensus 184 ~I~l~ 188 (642)
+|+..
T Consensus 188 kitF~ 192 (842)
T KOG0355|consen 188 KITFS 192 (842)
T ss_pred eEEeC
Confidence 99985
No 102
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=81.04 E-value=1.4 Score=50.31 Aligned_cols=42 Identities=29% Similarity=0.506 Sum_probs=26.8
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCH
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNR 96 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~ 96 (642)
++.||+.||..+.. ...+.|.+..+.++ -.|.|.|||+||++
T Consensus 475 v~~nll~NA~k~~~---------------~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHAN---------------ASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcCC---------------CCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 57888888877531 11234444433233 36899999999985
No 103
>KOG1845|consensus
Probab=80.49 E-value=1.6 Score=51.45 Aligned_cols=92 Identities=28% Similarity=0.292 Sum_probs=56.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEE-----EEeCCCCCCHHHHHHHHHHHHhccchh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTIN-----ISDNGIGMNRNDIITNLGTIAKSGTQE 113 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~-----I~DnGiGMt~~el~~~l~~ia~Sg~~~ 113 (642)
-++-||+.||+|=+..+..- +. -..|....|-.-+-+. |.|||.||..+-+..++.. +.|.+.
T Consensus 149 ~a~aeLldnalDEi~~~~tf-~~---------vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l-~~~~k~- 216 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF-VR---------VDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSL-GYSSKK- 216 (775)
T ss_pred Chhhhhccccccccccccce-EE---------eeeecccccccceeEEeeccceeccccccCHHHHHHHHHh-hhhhhh-
Confidence 46899999999998643211 00 0011111111001122 6788999999888876644 343332
Q ss_pred hHhhhhcCccccccccccccchhhhhhc-ccCEEEEEeec
Q psy2391 114 FFSKLSGDQKKDASLIGQFGVGFYSAFI-VAKKIIVKSRH 152 (642)
Q Consensus 114 f~~~~~~~~~~~~~~iG~fGiGf~S~f~-v~~~v~V~Sr~ 152 (642)
+....+||+|.||..+.| ++..+.|.+|.
T Consensus 217 ----------e~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 217 ----------EANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ----------hhhhhhhhhccccccchhhhccceeEeehh
Confidence 124578999999987755 78888888884
No 104
>PRK13559 hypothetical protein; Provisional
Probab=79.88 E-value=2.4 Score=45.32 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=29.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--cCCC--CEEEEEeCCCCCCH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--DKDN--RTINISDNGIGMNR 96 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d~~~--~~i~I~DnGiGMt~ 96 (642)
-++.||+.||+.+... .....+|.|.+ ...+ -.|.|.|||.|++.
T Consensus 270 ~vl~nLi~NA~k~~~~-------------~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 270 LVLHELAVNAIKHGAL-------------SADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHhHHHhccc-------------cCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 3788999999888521 01134566655 3333 36889999999654
No 105
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=52.60 E-value=29 Score=37.25 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=38.7
Q ss_pred cCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHH
Q psy2391 33 LYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDII 100 (642)
Q Consensus 33 LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~ 100 (642)
|-+...+++.-.+|-|.--+++- ..+.+|.|.+...+ -+++|+|||.|++-.++.
T Consensus 352 l~~e~~talyRv~QEaltNIErH-------------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIERH-------------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhh-------------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 44456677788888888777642 34667887765443 379999999999875543
No 106
>KOG1845|consensus
Probab=43.64 E-value=15 Score=43.74 Aligned_cols=51 Identities=24% Similarity=0.444 Sum_probs=30.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhh-hcccCEEEEEeec
Q psy2391 85 INISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSA-FIVAKKIIVKSRH 152 (642)
Q Consensus 85 i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~-f~v~~~v~V~Sr~ 152 (642)
+...|+|+||+.+++...... + .....||++|=|+.|. +-.+..+.+.|+.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f-~----------------~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~ 53 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINF-A----------------VGLYGIGDYGNGLKSGSMRIGKDFILFTKK 53 (775)
T ss_pred cccccCCCCcCchhhhhhhhh-c----------------ccccccccccCcccccccccCcccceeecc
Confidence 567899999999999875531 0 2344556666665544 3344444444443
No 107
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=40.51 E-value=31 Score=37.48 Aligned_cols=26 Identities=19% Similarity=0.449 Sum_probs=17.3
Q ss_pred CceEEEEE--cCCCCEEEEEeCCCCCCH
Q psy2391 71 DLEIIITF--DKDNRTINISDNGIGMNR 96 (642)
Q Consensus 71 ~~~I~I~~--d~~~~~i~I~DnGiGMt~ 96 (642)
+.+|+|.. +.+.-.+.|+|||+|++.
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 34555554 433346899999999874
No 108
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=39.04 E-value=49 Score=37.39 Aligned_cols=85 Identities=25% Similarity=0.374 Sum_probs=52.2
Q ss_pred CCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC---CCCCHHHHHHHHHHHHhcc
Q psy2391 34 YSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG---IGMNRNDIITNLGTIAKSG 110 (642)
Q Consensus 34 Ys~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG---iGMt~~el~~~l~~ia~Sg 110 (642)
+.-|..+|||+|.||+=.-+ | +. ... .|+|.+.+ ..|.|.-.| .||+.+++.+. .|-
T Consensus 268 ~dyP~~alREai~NAv~HRD---Y---s~-----~~~--~v~I~iyd--DRieI~NPGgl~~gi~~~~l~~~-----~s~ 327 (467)
T COG2865 268 WDYPLEALREAIINAVIHRD---Y---SI-----RGR--NVHIEIYD--DRIEITNPGGLPPGITPEDLLKG-----RSK 327 (467)
T ss_pred ccCCHHHHHHHHHHHHHhhc---c---cc-----CCC--ceEEEEEC--CeEEEECCCCCCCCCChhHcccC-----CCc
Confidence 33488999999999985532 2 11 111 45555443 368899877 58999888763 342
Q ss_pred ch-hhHhhhhcCccccccccccccchhhhhhcc
Q psy2391 111 TQ-EFFSKLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 111 ~~-~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.+ ..+.++ -.+.++|-+.|.|+-=+|-.
T Consensus 328 ~RNp~LA~~----l~~~~liE~~GSGi~rm~~~ 356 (467)
T COG2865 328 SRNPVLAKV----LRDMGLIEERGSGIRRMFDL 356 (467)
T ss_pred ccCHHHHHH----HHHhhhHHHhCccHHHHHHH
Confidence 22 122221 13578999999997555444
No 109
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=31.73 E-value=56 Score=36.87 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=34.7
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN 97 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~ 97 (642)
|.-.+-=||+||+-.+-..+ .+...+.|.+..+..+-.|.|+|||-|..++
T Consensus 457 P~filQPLVENAIKHG~~~~----------~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQL----------KDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccch----------hcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 45567789999998873211 1233455555555444579999999999986
No 110
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=30.56 E-value=2.5e+02 Score=29.49 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHH--HHHHHHHHHhhccc--CCcchHHHhcccceeeecCCCCCCCcccH
Q psy2391 359 VKVIREGSTKRILNILEDLSTSNDKEKIIKYAN--FWKEFGQVIKEGIG--EDNNNKERISKLLRFASTNNDSDIQNVSL 434 (642)
Q Consensus 359 l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~--f~~~~~~~lK~g~~--~D~~~~~~~~~ll~f~ts~~~~~~~~~sL 434 (642)
+++-.+.+..+++..+.+-..+ +|+ .+.+ ....-|.+|=.|+. ..+++.+.+.+++.=+=.-.+ .
T Consensus 74 ~K~r~NeiA~~vl~~vr~~~~~-~~~---dl~~Avk~ai~GN~iDfgv~G~~~~~lee~~~~~~~~~l~i~d-------~ 142 (285)
T COG1578 74 YKRRANEIALKVLPKVRENIED-TPE---DLKTAVKLAIVGNVIDFGVLGFSPFDLEEEVEKLLDAELYIDD-------S 142 (285)
T ss_pred HHHHHHHHHHHHHHHHHhcccC-ChH---HHHHHHHHHHHhcceeeccccCCHhHHHHHHHHhhcCcccccc-------h
Confidence 3444445555555555543334 454 3333 23334444444444 244455555555432111111 2
Q ss_pred HHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEE
Q psy2391 435 MDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEV 475 (642)
Q Consensus 435 ~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eV 475 (642)
.+..++.+.- .|+|++..-.+-.-.-+.+|..+..|.+|
T Consensus 143 ~k~~~~l~~a--~VlYl~DNaGEi~FD~vlie~ik~~~~~v 181 (285)
T COG1578 143 PKLLELLKNA--SVLYLTDNAGEIVFDKVLIEVIKELGKKV 181 (285)
T ss_pred HHHHHHhccC--cEEEEecCCccHHHHHHHHHHHHhcCCce
Confidence 3334444322 66666544334333334444444444444
No 111
>KOG0019|consensus
Probab=29.99 E-value=53 Score=37.93 Aligned_cols=77 Identities=13% Similarity=-0.044 Sum_probs=64.2
Q ss_pred cHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccccCCcceEEeecCCCCCC
Q psy2391 433 SLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLG 509 (642)
Q Consensus 433 sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l~ 509 (642)
+...|+.+++.++.-+|+...-.++.+-.+-|-..-++.|+.+-...-+||+.|...+.+|-+.-..-|+++++.++
T Consensus 270 ~d~lav~hf~~eg~lefrail~vP~rap~~lF~~~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLN 346 (656)
T KOG0019|consen 270 DDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDMRKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLN 346 (656)
T ss_pred cchhhHhhhccccceEEEEEEeccccCcchhhhhhhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccc
Confidence 45678999998888888887666666666667777778899999999999999999999999888888899887654
No 112
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=29.60 E-value=76 Score=33.48 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCC
Q psy2391 364 EGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGED 407 (642)
Q Consensus 364 ~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D 407 (642)
..++.-|.++.+.|.++ |+| .| .++|+..||.|+--|
T Consensus 199 rI~G~HVa~Ym~~Lkee-dee---~y---k~qFS~yik~gl~~d 235 (300)
T PTZ00069 199 RIFGKHVAEYMKQLKEE-DPD---KY---KKQFSKYIKAGVGPD 235 (300)
T ss_pred hhcchhHHHHHHHhhhh-ChH---HH---HHHHHHHHHcCCChh
Confidence 35677888899999888 888 55 678899999999655
No 113
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=25.83 E-value=21 Score=29.50 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.6
Q ss_pred cccCCccEEEEcceeeecCCCchhhhh
Q psy2391 305 RNKRNGIKLYVKRVFIMDDAEQLLPTY 331 (642)
Q Consensus 305 ~~~~~~~~lyv~~v~i~d~~~~llP~~ 331 (642)
+.+++.+.||-++-+|.|++++++|+-
T Consensus 55 pnn~~hi~ly~kk~yi~dklkeifpde 81 (91)
T PF06523_consen 55 PNNSNHIFLYHKKNYIFDKLKEIFPDE 81 (91)
T ss_pred CCCcceEEEEecchhHHHHHHHhCCCC
Confidence 456789999999999999999999963
No 114
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=25.19 E-value=1.2e+02 Score=32.55 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=31.0
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC----CEEEEEeCCCCCCHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN----RTINISDNGIGMNRNDIITN 102 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~----~~i~I~DnGiGMt~~el~~~ 102 (642)
-++--||.||..|+.-+- .. ...+.. ...+.+.+++-... -.|.|.|||-|++.+ |...
T Consensus 244 Qv~LNlVrNAaqA~~~~~-~~--~g~I~L-rTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~-L~~~ 306 (363)
T COG3852 244 QVFLNLVRNAAQALGGRA-DE--GGEIIL-RTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPD-LQDH 306 (363)
T ss_pred HHHHHHHHHHHHHhcCCC-CC--CceEEE-EeccceEEEccCceeEeeeeeEEecCCCCCChH-Hhhh
Confidence 356779999999985310 00 000000 00122333332221 258899999999874 4443
No 115
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=24.95 E-value=1.1e+02 Score=25.95 Aligned_cols=55 Identities=22% Similarity=0.474 Sum_probs=41.1
Q ss_pred CCCeEEEEEcCCHhhH-hcCcchHHHHhcCCEEEEeCCCchhHHhhcccccCCcceEEe
Q psy2391 444 GQNKIYYITGENYKSV-KNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSI 501 (642)
Q Consensus 444 ~q~~Iyy~~~~~~~~~-~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~~~~~~f~~v 501 (642)
+.+.+|.++|+++..+ ..+| .+.+.|..||+..+.+++.+...+......+..-|
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~---~a~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASP---LAAKNNAPILLVNNSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHH---HHHhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 5678888888776643 3322 34457899999999999999999988866666665
No 116
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.42 E-value=62 Score=22.26 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=9.0
Q ss_pred CCEEEEEeCCC
Q psy2391 82 NRTINISDNGI 92 (642)
Q Consensus 82 ~~~i~I~DnGi 92 (642)
+.+|+|.|+|.
T Consensus 13 n~qITIeD~GP 23 (30)
T PF07492_consen 13 NFQITIEDTGP 23 (30)
T ss_pred CcEEEEecCCC
Confidence 46899999985
No 117
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=22.74 E-value=84 Score=29.77 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=22.4
Q ss_pred EEEcCCCHHHHHHhh---Cc---c---------cHHHHHHHHHHHHH
Q psy2391 587 LEINPNHALIQRIQL---NN---D---------NIHNWSHILFDQAL 618 (642)
Q Consensus 587 LEINp~HplIkkL~~---~~---~---------~~~~~~~~Lyd~Al 618 (642)
=+.+|+||||.+|.. ++ + ++=.+|++.||.=+
T Consensus 16 E~d~p~~plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~yv 62 (147)
T PF06112_consen 16 EADYPNHPLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQYV 62 (147)
T ss_pred cccCCCCHHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHHHH
Confidence 468999999999997 22 1 23356777887644
No 118
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=22.33 E-value=7e+02 Score=23.89 Aligned_cols=132 Identities=13% Similarity=0.217 Sum_probs=79.2
Q ss_pred ceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCc-----hhHHhhcccc
Q psy2391 418 LRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRV-----DEWMLSFIPK 492 (642)
Q Consensus 418 l~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~i-----De~~l~~l~~ 492 (642)
++|.|-.|+ .--+++.+...=+. ..+.++.-.... -..+++|+++-.+ |+-+...|.+
T Consensus 2 IvYsS~TGN----TkkvA~aI~~~l~~-~~~~~~~~~~~~------------~~~yD~i~lG~w~d~G~~d~~~~~fl~~ 64 (160)
T PF12641_consen 2 IVYSSRTGN----TKKVAEAIAEALGA-KDIVSVEEPPED------------LEDYDLIFLGFWIDKGTPDKDMKEFLKK 64 (160)
T ss_pred EEEECCCCh----HHHHHHHHHHHCCC-ceeEeccccccC------------CCCCCEEEEEcCccCCCCCHHHHHHHHH
Confidence 445444444 25677777665444 566666421110 2567999998855 5677777788
Q ss_pred cCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHH
Q psy2391 493 FENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRM 572 (642)
Q Consensus 493 ~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~ 572 (642)
.+++++--....+...+ .+-+..+++.++..+... ++... ..+.. +.++..|...
T Consensus 65 l~~KkV~lF~T~G~~~~--------------s~~~~~~~~~~~~~~~~~-------~~~lg--~f~Cq--Gk~~~~~~e~ 119 (160)
T PF12641_consen 65 LKGKKVALFGTAGAGPD--------------SEYAKKILKNVEALLPKG-------NEILG--TFMCQ--GKMDPKVIEK 119 (160)
T ss_pred ccCCeEEEEEecCCCCc--------------hHHHHHHHHHHHHhhccC-------Ceecc--eEEeC--CcCCHHHHHH
Confidence 88888877777665321 123445566666666543 12221 23332 4567788888
Q ss_pred HHHccCCCCCCCceEEEcCCCHHHHHHhh
Q psy2391 573 LKAAGQETPNSKPILEINPNHALIQRIQL 601 (642)
Q Consensus 573 m~~~~~~~~~~k~~LEINp~HplIkkL~~ 601 (642)
|+.| +.-||.|+.+..+..
T Consensus 120 ~~~~----------~~~~~~~~~~~~~~~ 138 (160)
T PF12641_consen 120 YKKM----------LPKNPPHAMTPERLA 138 (160)
T ss_pred HHhc----------cCCCCCCcccHHHHH
Confidence 8876 345688888887775
No 119
>PF14501 HATPase_c_5: GHKL domain
Probab=21.62 E-value=1.5e+02 Score=25.56 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=11.5
Q ss_pred HHHHHHhcHHHHhHh
Q psy2391 40 FLRELISNASDALDK 54 (642)
Q Consensus 40 ~lRELIqNA~DA~~~ 54 (642)
.+-=|+.||++|+.+
T Consensus 9 il~nlldNAiea~~~ 23 (100)
T PF14501_consen 9 ILGNLLDNAIEACKK 23 (100)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344589999999864
No 120
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=21.06 E-value=1.4e+02 Score=28.11 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCC
Q psy2391 364 EGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGED 407 (642)
Q Consensus 364 ~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D 407 (642)
..+..|+++.|..++.. -. ..-++...|..--+.|+++|
T Consensus 101 ~~Vk~kil~li~~W~~~--f~---~~p~~~~~Y~~Lk~~G~i~~ 139 (139)
T cd03567 101 EKVKTKIIELLYSWTLE--LP---HEPKIKEAYDMLKKQGIIKD 139 (139)
T ss_pred HHHHHHHHHHHHHHHHH--hc---ccchHHHHHHHHHHCCCcCC
Confidence 46778888888888764 22 22336677888888898875
No 121
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=20.55 E-value=1.6e+02 Score=27.87 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=36.6
Q ss_pred CHHHHHHhh---CcccHHHHHHHHHHH----HHHcCCC-CCCCHHHHHHHHHHHhc
Q psy2391 593 HALIQRIQL---NNDNIHNWSHILFDQ----ALLAENG-VLNDPMNFVKRLNEMLL 640 (642)
Q Consensus 593 HplIkkL~~---~~~~~~~~~~~Lyd~----All~~G~-~l~d~~~f~~r~~~ll~ 640 (642)
||.|+.+.+ +++.+..++.++|++ +-=.+.. .+.|-..|..-+|.+|.
T Consensus 2 ~p~vqefk~lIe~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t 57 (141)
T PF12588_consen 2 HPVVQEFKDLIESDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMT 57 (141)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHh
Confidence 899999998 788899999999999 2222222 25777888888888875
No 122
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=20.05 E-value=70 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.557 Sum_probs=18.7
Q ss_pred CCceEEEcCCCHHHHHHhhCcccHHHHH
Q psy2391 583 SKPILEINPNHALIQRIQLNNDNIHNWS 610 (642)
Q Consensus 583 ~k~~LEINp~HplIkkL~~~~~~~~~~~ 610 (642)
+---+.|.|+|||+++|.+.++.+.+.+
T Consensus 35 Gvtfials~~H~lv~~l~~~~~~l~~fi 62 (185)
T PF13603_consen 35 GVTFIALSPEHPLVKKLAENNPELQEFI 62 (185)
T ss_dssp G--EEEEETTSCHHHHCTTTHHHHHHHH
T ss_pred CceEEEECCCCHHHHhhhhhhhhHHHHH
Confidence 3456899999999999966444444333
Done!