Query psy2391
Match_columns 642
No_of_seqs 254 out of 1750
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:48:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 5E-153 2E-157 1294.7 49.4 614 13-641 3-674 (677)
2 2ioq_A Chaperone protein HTPG; 100.0 2E-148 8E-153 1254.0 51.6 618 13-640 4-623 (624)
3 2o1u_A Endoplasmin; GRP94, HSP 100.0 3E-147 1E-151 1247.9 53.9 610 13-641 22-657 (666)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-133 6E-138 1120.4 38.3 556 13-578 4-559 (559)
5 3hjc_A Heat shock protein 83-1 100.0 2E-109 7E-114 896.8 37.1 397 236-641 11-420 (444)
6 3q6m_A Heat shock protein HSP 100.0 6E-109 2E-113 888.6 37.3 390 243-641 2-404 (448)
7 2cge_A ATP-dependent molecular 100.0 5E-106 2E-110 867.7 37.6 388 244-641 1-402 (405)
8 2gq0_A Chaperone protein HTPG; 100.0 3.9E-83 1.3E-87 657.5 23.9 292 244-561 2-295 (303)
9 1hk7_A Heat shock protein HSP8 100.0 3.3E-82 1.1E-86 646.3 23.2 287 244-540 1-288 (288)
10 3pry_A Heat shock protein HSP 100.0 4.7E-79 1.6E-83 618.2 22.8 262 242-510 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 8.1E-79 2.8E-83 614.8 21.7 256 242-504 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 4.3E-77 1.5E-81 606.2 20.3 258 242-505 1-263 (263)
13 3ied_A Heat shock protein; HSP 100.0 5E-54 1.7E-58 430.0 17.6 204 11-220 22-270 (272)
14 3nmq_A Heat shock protein HSP 100.0 4E-52 1.4E-56 417.8 22.8 205 13-222 16-222 (239)
15 3peh_A Endoplasmin homolog; st 100.0 4.4E-52 1.5E-56 425.3 23.2 213 7-223 17-232 (281)
16 3o0i_A HSP90AA1 protein; HSP90 100.0 1E-47 3.5E-52 389.5 22.8 206 12-222 36-243 (256)
17 1qy5_A Endoplasmin; GRP94, NEC 100.0 9.7E-48 3.3E-52 394.5 18.6 208 12-223 4-217 (269)
18 3t0h_A Heat shock protein HSP 100.0 5.7E-47 1.9E-51 380.2 20.5 208 10-222 6-215 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 1.6E-46 5.6E-51 380.1 20.7 208 11-222 7-220 (236)
20 2wer_A ATP-dependent molecular 100.0 1.9E-43 6.4E-48 354.6 20.0 205 13-222 3-210 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 6.1E-43 2.1E-47 358.5 20.9 205 12-221 44-250 (264)
22 2ior_A Chaperone protein HTPG; 100.0 6.1E-42 2.1E-46 346.7 18.2 207 12-220 23-231 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 3.7E-34 1.3E-38 260.4 12.8 112 529-640 12-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.9 8.8E-27 3E-31 247.3 17.2 274 31-368 19-330 (333)
25 3na3_A DNA mismatch repair pro 99.9 2E-25 7E-30 236.6 14.9 281 25-369 16-334 (348)
26 1h7s_A PMS1 protein homolog 2; 99.9 2.6E-25 8.9E-30 238.3 15.0 291 22-367 15-360 (365)
27 3h4l_A DNA mismatch repair pro 99.9 7.1E-25 2.4E-29 234.3 17.4 280 33-369 22-357 (367)
28 1s16_A Topoisomerase IV subuni 99.5 1.9E-12 6.4E-17 139.7 19.7 228 31-323 23-276 (390)
29 3cwv_A DNA gyrase, B subunit, 99.4 6.1E-12 2.1E-16 134.7 19.4 216 37-322 31-264 (369)
30 1kij_A DNA gyrase subunit B; t 99.4 2.4E-12 8.3E-17 139.0 16.0 224 38-323 34-276 (390)
31 1ei1_A DNA gyrase B, GYRB; ATP 99.4 2.4E-11 8.3E-16 131.0 20.2 226 36-323 34-277 (391)
32 3fv5_A DNA topoisomerase 4 sub 99.3 3.8E-12 1.3E-16 125.3 11.2 155 37-221 18-188 (201)
33 1mu5_A Type II DNA topoisomera 99.1 8.1E-11 2.8E-15 129.9 10.1 145 38-210 34-196 (471)
34 2zbk_B Type 2 DNA topoisomeras 99.1 2.4E-10 8.1E-15 127.7 10.1 148 38-211 33-196 (530)
35 1zxm_A TOPO IIA ATPase, DNA to 98.9 4E-09 1.4E-13 113.8 11.9 157 38-219 54-227 (400)
36 2q2e_B Type 2 DNA topoisomeras 98.9 7.9E-10 2.7E-14 125.3 6.5 146 38-211 39-201 (621)
37 4duh_A DNA gyrase subunit B; s 98.9 3.6E-09 1.2E-13 105.3 9.0 155 37-220 36-204 (220)
38 4emv_A DNA topoisomerase IV, B 98.9 1.4E-08 4.8E-13 101.4 12.8 153 38-219 42-209 (226)
39 3lnu_A Topoisomerase IV subuni 98.6 1.9E-07 6.4E-12 100.7 11.6 161 31-219 42-219 (408)
40 3ttz_A DNA gyrase subunit B; p 98.5 2.1E-07 7.4E-12 91.1 7.9 138 37-220 32-177 (198)
41 1pvg_A DNA topoisomerase II; G 98.3 3.9E-06 1.3E-10 90.9 13.0 155 39-219 67-240 (418)
42 3jz3_A Sensor protein QSEC; he 97.6 3.1E-05 1.1E-09 74.9 4.4 71 39-142 120-190 (222)
43 4gfh_A DNA topoisomerase 2; to 97.5 0.00069 2.4E-08 81.9 15.0 147 39-210 62-224 (1177)
44 1ysr_A Sensor-type histidine k 97.5 7.6E-05 2.6E-09 68.1 4.9 74 39-142 49-122 (150)
45 1id0_A PHOQ histidine kinase; 97.4 8.7E-05 3E-09 67.6 3.6 54 33-102 38-94 (152)
46 1th8_A Anti-sigma F factor; SP 97.4 0.00025 8.7E-09 64.5 6.7 86 38-152 41-126 (145)
47 4ew8_A Sensor protein DIVL; si 97.3 0.00014 4.9E-09 72.7 4.9 50 39-102 158-207 (268)
48 3sl2_A Sensor histidine kinase 97.3 8.5E-05 2.9E-09 69.9 3.0 78 39-142 46-125 (177)
49 3ehg_A Sensor kinase (YOCF pro 97.3 0.00016 5.6E-09 64.5 4.5 46 39-99 43-88 (128)
50 3ehh_A Sensor kinase (YOCF pro 97.3 0.00024 8.4E-09 68.7 6.1 45 40-99 134-178 (218)
51 2btz_A Pyruvate dehydrogenase 97.3 0.00023 7.7E-09 76.4 6.4 116 39-191 234-349 (394)
52 3d36_A Sporulation kinase B; G 97.3 0.00015 5E-09 71.2 4.4 73 39-142 126-198 (244)
53 2c2a_A Sensor histidine kinase 97.2 0.00013 4.4E-09 72.9 2.9 79 39-142 141-221 (258)
54 2e0a_A Pyruvate dehydrogenase 97.2 0.0003 1E-08 75.5 5.9 117 39-191 233-349 (394)
55 2q8g_A [pyruvate dehydrogenase 97.2 0.00023 8E-09 76.7 5.1 117 39-191 246-362 (407)
56 1i58_A Chemotaxis protein CHEA 97.2 0.00012 4.1E-09 69.6 2.5 57 41-101 52-110 (189)
57 1y8o_A [pyruvate dehydrogenase 97.1 0.00025 8.7E-09 76.8 4.1 118 39-191 256-373 (419)
58 1bxd_A ENVZ(290-450), protein 97.1 9.1E-05 3.1E-09 68.5 0.4 47 39-101 50-96 (161)
59 1gkz_A [3-methyl-2-oxobutanoat 97.1 0.0002 6.8E-09 76.7 3.0 59 39-103 241-299 (388)
60 3a0y_A Sensor protein; ATP-LID 96.9 0.00042 1.4E-08 62.8 2.9 50 39-102 50-99 (152)
61 1b3q_A Protein (chemotaxis pro 96.7 0.0021 7.1E-08 68.7 7.0 52 41-100 111-168 (379)
62 1r62_A Nitrogen regulation pro 96.6 0.00083 2.8E-08 61.3 2.9 73 39-142 51-133 (160)
63 3zxq_A Hypoxia sensor histidin 95.8 0.0048 1.7E-07 54.0 3.1 44 39-98 42-85 (124)
64 3zxo_A Redox sensor histidine 95.4 0.0045 1.5E-07 54.5 1.5 44 39-98 46-89 (129)
65 3a0r_A Sensor protein; four he 94.8 0.015 5.3E-07 59.8 3.9 49 39-101 247-295 (349)
66 4fpp_A Phosphotransferase; fou 94.5 0.045 1.5E-06 54.4 6.2 46 40-99 150-197 (247)
67 3ke6_A Protein RV1364C/MT1410; 88.0 0.98 3.4E-05 48.2 7.9 74 38-151 299-373 (399)
68 1ixm_A SPO0B, protein (sporula 73.8 2.6 8.8E-05 40.4 4.2 55 39-103 108-166 (192)
69 2do3_A Transcription elongatio 22.3 1E+02 0.0035 24.4 4.3 46 139-190 17-62 (69)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-153 Score=1294.72 Aligned_cols=614 Identities=40% Similarity=0.723 Sum_probs=554.1
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.+++.||+|+++||++|+++||||+++|||||||||+||++++|+.++++++......++.|+|.++.++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999988777778899999998889999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT 172 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 172 (642)
|||++||.++|++||+||++.|+++++. ..+...||||||||||+||||++|+|+||+.+ +.++.|+++|++.|+
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~--~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~---~~~~~W~s~g~~~~t 157 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA--GADVSMIGQFGVGFYSLFLVADRVQVISKSND---DEQYIWESNAGGSFT 157 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCS--SCCCCCCCCTTCTTGGGGGTEEEEEEEEECTT---SCEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhc--ccchhhcCCCCchhHHHhhcCcEEEEEEccCC---CceEEEEEcCCceEE
Confidence 9999999999999999999999988874 25778999999999999999999999999986 469999999999999
Q ss_pred EEec---CCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccc---c--cc-----------------
Q psy2391 173 IETI---NKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETW---D--EE----------------- 227 (642)
Q Consensus 173 v~~~---~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~---~--~~----------------- 227 (642)
++++ ...++||+|+|+|+++..+|++.++|+++|++||+|++|||+++..+. + ++
T Consensus 158 i~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~ 237 (677)
T 2cg9_A 158 VTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDE 237 (677)
T ss_dssp EEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC---------------------
T ss_pred EeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhccccccccccccc
Confidence 9985 356899999999999999999999999999999999999999963211 0 00
Q ss_pred ----------cc---c------cccccCceEEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEE
Q psy2391 228 ----------KK---E------TVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEY 288 (642)
Q Consensus 228 ----------g~---~------~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~ 288 (642)
|+ + .++...+|+.+|+++|||+++++++++++|.+||++++++|++||+|+|+++||+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 238 DDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCE
T ss_pred cccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceE
Confidence 00 0 0112467899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCccc-cccCCccEEEEcceeeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHH
Q psy2391 289 IQLLYIPSRAPYDLWD-RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGST 367 (642)
Q Consensus 289 ~gll~iP~~~p~~~~~-~~~~~~~~lyv~~v~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~ 367 (642)
+|+||||+++||++|. +..++||+||||||||+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|+
T Consensus 318 ~~lLyiP~~ap~d~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~ 397 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIV 397 (677)
T ss_dssp EEEEEECSSCCC---------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhhhhhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHHH
Confidence 9999999999999996 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCe
Q psy2391 368 KRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNK 447 (642)
Q Consensus 368 ~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~ 447 (642)
+|++++|.++|++ ++ .|.+||++||.+||+|+++|+.||++|++||||+||.++ ++++||+||++|||++|+.
T Consensus 398 kkvl~~l~~la~~--~e---~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~--~~~~sL~eYv~rmke~Q~~ 470 (677)
T 2cg9_A 398 KKLIEAFNEIAED--SE---QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSV--DELTSLTDYVTRMPEHQKN 470 (677)
T ss_dssp HHHHHHHHHHHSC--SH---HHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCT--TSCBCSTTHHHHSCTTCCE
T ss_pred HHHHHHHHHHHhC--HH---HHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCC--CceeeHHHHHHhccccCce
Confidence 9999999999987 78 999999999999999999999999999999999999864 2689999999999999999
Q ss_pred EEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHH
Q psy2391 448 IYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKF 527 (642)
Q Consensus 448 Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~ 527 (642)
|||++|+|++++++|||+|.|+++|+|||||++||||||+++|.+|+|++|++|+++ +++++.+++ ++..++.++++
T Consensus 471 IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~--~~~~~~~~~~~ 547 (677)
T 2cg9_A 471 IYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEE--KAEREKEIKEY 547 (677)
T ss_dssp EEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTS--STTHHHHHGGG
T ss_pred EEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhh--hhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 887653221 22334557789
Q ss_pred HHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHHHHHccCC------CCCCCceEEEcCCCHHHHHHhh
Q psy2391 528 QNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQE------TPNSKPILEINPNHALIQRIQL 601 (642)
Q Consensus 528 ~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~m~~~~~~------~~~~k~~LEINp~HplIkkL~~ 601 (642)
++|++|+|++|+++|.+|++|+||++||||+|++++|||++|+|||++|++. ++..+++|||||+||||++|..
T Consensus 548 ~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~ 627 (677)
T 2cg9_A 548 EPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKK 627 (677)
T ss_dssp HHHHHHHHHTTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999853 3467899999999999999975
Q ss_pred -------CcccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhcc
Q psy2391 602 -------NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLLI 641 (642)
Q Consensus 602 -------~~~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~~ 641 (642)
+++.++++|++|||+|+|++|+.++||+.|++|+|+||.+
T Consensus 628 ~~~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~ 674 (677)
T 2cg9_A 628 RVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISL 674 (677)
T ss_dssp HHHTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSS
T ss_pred hhhccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 2346899999999999999999999999999999999864
No 2
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=2.4e-148 Score=1253.99 Aligned_cols=618 Identities=54% Similarity=0.943 Sum_probs=531.0
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.+++.||+++++|+++|+++||+++++|||||||||+||++++|+.++++++...+...+.|+|.++.++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999988777777899999998889999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT 172 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 172 (642)
|||++||.++|++||+||++.|++++++....+...||+||+||||+||||++|+|.||+.+.++..++.|++.|++.|+
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~ 163 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 163 (624)
T ss_dssp CCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCE
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEE
Confidence 99999999999999999999998888643234678999999999999999999999999986223679999999999999
Q ss_pred EEecCCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccCC
Q psy2391 173 IETINKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARGK 252 (642)
Q Consensus 173 v~~~~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~ 252 (642)
+++++..++||+|+|+|+++..||++.++|+++|++||.|+++||++...+ +++|+ ...+|+++|+++|+|++++
T Consensus 164 i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~e-~~~~~----~~~~~~~in~~~~lw~~~~ 238 (624)
T 2ioq_A 164 VADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE-EKDGE----TVISWEKINKAQALWTRNK 238 (624)
T ss_dssp EEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEEE-ECSSC----EEEEEEECCCCSCTTTSCT
T ss_pred EEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc-ccccc----cccceEEEeCCccceEecC
Confidence 998766789999999999999999999999999999999999999995421 11232 1357899999999999999
Q ss_pred CCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCCCchhhhhh
Q psy2391 253 SEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDAEQLLPTYL 332 (642)
Q Consensus 253 ~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~~~llP~~l 332 (642)
+++++++|.+||+.++++|.+||.|+|++++|+++++|+||+|+.+|+++|++..+++++||||||||+|+|+++||.|+
T Consensus 239 ~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~~~llP~~l 318 (624)
T 2ioq_A 239 SEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYL 318 (624)
T ss_dssp TTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEEECSSSCTTS
T ss_pred ccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEeecchhccchhhh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred hceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcchHH
Q psy2391 333 RFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKE 412 (642)
Q Consensus 333 ~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~~ 412 (642)
+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++|++ ||+ +|++||++||.+||+|+++|+.|++
T Consensus 319 ~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~~-d~e---~y~~f~~~f~~~lK~G~~~D~~~~~ 394 (624)
T 2ioq_A 319 RFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD-DAE---KYQTFWQQFGLVLKEGPAEDFANQE 394 (624)
T ss_dssp TTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH-CHH---HHHHHHHHHHHHHTTHHHHCCTTHH
T ss_pred hhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-CHH---HHHHHHHHHhHHhhhhhccCHHHHH
Confidence 999999999999999999999999999999999999999999999999 899 9999999999999999999999999
Q ss_pred HhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccc
Q psy2391 413 RISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPK 492 (642)
Q Consensus 413 ~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~ 492 (642)
+|++||||+||.++++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|+|||+|++||||||+++|.+
T Consensus 395 ~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~ 474 (624)
T 2ioq_A 395 AIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTE 474 (624)
T ss_dssp HHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCE
T ss_pred HHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecCchHHHHHHHHHh
Confidence 99999999999865224789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHH
Q psy2391 493 FENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRM 572 (642)
Q Consensus 493 ~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~ 572 (642)
|+|++|++|+++++++.+.++++ ++..++.++++++|++|+|++|+++|++|++|+||++||||+|++++|||++|+||
T Consensus 475 ~~~k~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~ 553 (624)
T 2ioq_A 475 FDGKPFQSVSKVDESLEKLADEV-DESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKL 553 (624)
T ss_dssp ETTEEEEETTSCSTTTTTCC--------HHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSSCCEEEECCC----------
T ss_pred cCCceEEEeecccccccccchhh-hhhhhHhHHHHHHHHHHHHHhhcCCceEEEEeecCCCCcEEEEecCcCcCHHHHHH
Confidence 99999999999999876542222 21334567789999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCCCCceEEEcCCCHHHHHHhh--CcccHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhc
Q psy2391 573 LKAAGQETPNSKPILEINPNHALIQRIQL--NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640 (642)
Q Consensus 573 m~~~~~~~~~~k~~LEINp~HplIkkL~~--~~~~~~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~ 640 (642)
|++|++.++..+++|||||+||||++|.. +++.++++|++|||+|+|++|++++||+.|++|+|+||.
T Consensus 554 m~~~~~~~~~~~~~LeiN~~hpli~~L~~~~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 554 FAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp -----------CCEEEECTTCHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHhhhcccccCceEEECCCCHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 99999877778999999999999999986 667799999999999999999999999999999999985
No 3
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=2.9e-147 Score=1247.86 Aligned_cols=610 Identities=40% Similarity=0.714 Sum_probs=520.8
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.+++.||+|+++|+++|+++|||++++|||||||||+||++++|+.++++++.......+.|+|.++.++++|+|+|||+
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 101 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 101 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999988777777899999998889999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCc---cccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQ---KKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG 169 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~---~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~ 169 (642)
|||++||.++|++||+||++.|+++++... ..+...||||||||||+||||++|+|+||+.+ +.++.|+++| |
T Consensus 102 GMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~---~~~~~W~s~g-g 177 (666)
T 2o1u_A 102 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN---DTQHIWESDS-N 177 (666)
T ss_dssp CCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTT---SCCEEEEESS-S
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCC---CceEEEEEeC-C
Confidence 999999999999999999999998887421 04678999999999999999999999999986 3689999998 8
Q ss_pred ceEEEecC---CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCcc
Q psy2391 170 NFTIETIN---KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASA 246 (642)
Q Consensus 170 ~~~v~~~~---~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~ 246 (642)
.|++++.. ..++||+|+|+|+++..||++.++|+++|++||+|+++||++..++.. +|+ +...+|+++|+++|
T Consensus 178 ~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~-~~~---~~~~~~~~iN~~~~ 253 (666)
T 2o1u_A 178 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTG-GGG---KTVWDWELMNDIKP 253 (666)
T ss_dssp CCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC-----------CCEEEECSCCSC
T ss_pred eEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEeccccc-ccc---ccccceEEEecCcc
Confidence 89999875 358999999999999999999999999999999999999999543211 121 23467899999999
Q ss_pred ccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCcccc---ccCCccEEEEcceeeecC
Q psy2391 247 LWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDR---NKRNGIKLYVKRVFIMDD 323 (642)
Q Consensus 247 iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~---~~~~~~~lyv~~v~i~d~ 323 (642)
+|+++++++++++|.+||++++++|.+||.|+|+++||+++|+|+||+|+.+|+++|.+ ..+++++||||||||+|+
T Consensus 254 lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~ 333 (666)
T 2o1u_A 254 IWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDD 333 (666)
T ss_dssp TTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC------------CEEEEETTEEEESC
T ss_pred ccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCc
Confidence 99999999999999999999999999999999999999999999999999999999976 468999999999999999
Q ss_pred CCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHH-HHHHHHHHHHhh
Q psy2391 324 AEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYA-NFWKEFGQVIKE 402 (642)
Q Consensus 324 ~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~-~f~~~~~~~lK~ 402 (642)
|+++||.|++||+|||||+|||||||||+||+|+++++||+.|++|++++|.++|++ +|+ +||++||.+||+
T Consensus 334 ~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~e-------~y~~~f~~~f~~~lK~ 406 (666)
T 2o1u_A 334 FHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADE-------KYNDTFWKEFGTNIKL 406 (666)
T ss_dssp CCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSCHH-------HHHHTHHHHHHHHHHH
T ss_pred hhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999874 999 999999999999
Q ss_pred cccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCc
Q psy2391 403 GIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRV 482 (642)
Q Consensus 403 g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~i 482 (642)
|+++|+.||++|++||||+||.++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|++||+|||||++||
T Consensus 407 G~~~D~~~~~~l~~ll~f~ss~~~--~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~l~~~i 484 (666)
T 2o1u_A 407 GVIEDHSNRTRLAKLLRFQSSHHP--SDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPV 484 (666)
T ss_dssp HHHHCGGGHHHHHTTCCEEETTSS--SCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHHTTCCCEEECSTH
T ss_pred hhccCHHHHHHHHhheEeeecCCC--CceeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHHHHHHhCCceEEEeCCch
Confidence 999999999999999999999874 378999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHH-hcccceEEEEeecCCCCCeEEEec
Q psy2391 483 DEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKI-LSEKAKDVRVTYRLTDSPACLVVD 561 (642)
Q Consensus 483 De~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~-L~~~v~~V~vs~rL~~sPa~~v~~ 561 (642)
||||+++|.+|+|++|++|+++++++++. +++++..++.++++++|++|+|++ |+++|.+|++|+||++||||+|++
T Consensus 485 De~~~~~l~e~~gk~~~~v~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v~~V~~s~rl~~sP~~lv~~ 562 (666)
T 2o1u_A 485 DEYCIQALPEFDGKRFQNVAKEGVKFDES--EKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVAS 562 (666)
T ss_dssp HHHHHHTCCCBTTBEEEETTBSCCCCCCC--HHHHHHHHHHHHHSHHHHHHHHHTTTTTTEEEEEECSSCSSCSEEEEBC
T ss_pred HHHHHHHHHhcCCCceEEecccccccccc--hhhhhhhhhhHHhHHHHHHHHHhccCCCceeEEEEeecCCCCCeEEEec
Confidence 99999999999999999999999987642 222223345677899999999999 999999999999999999999999
Q ss_pred CCCcchhHHHHHHHccC----C-----CCCCCceEEEcCCCHHHHHHhh------CcccHHHHHHHHHHHHHHcCCCCCC
Q psy2391 562 ENEPSGNMIRMLKAAGQ----E-----TPNSKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAENGVLN 626 (642)
Q Consensus 562 e~~~s~~m~r~m~~~~~----~-----~~~~k~~LEINp~HplIkkL~~------~~~~~~~~~~~Lyd~All~~G~~l~ 626 (642)
++|||++|+|||++|++ + ++..+++|||||+||||++|.. +++.++++|++|||+|+|++|+.++
T Consensus 563 ~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~~~~~l~d~All~~G~~~~ 642 (666)
T 2o1u_A 563 QYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLP 642 (666)
T ss_dssp TTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred CcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999977 3 3567899999999999999975 4467999999999999999999999
Q ss_pred CHHHHHHHHHHHhcc
Q psy2391 627 DPMNFVKRLNEMLLI 641 (642)
Q Consensus 627 d~~~f~~r~~~ll~~ 641 (642)
||+.|++|+|+||.+
T Consensus 643 dp~~f~~r~~~ll~~ 657 (666)
T 2o1u_A 643 DTKAYGDRIERMLRL 657 (666)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999999864
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=1.8e-133 Score=1120.37 Aligned_cols=556 Identities=56% Similarity=0.956 Sum_probs=446.0
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.+++.||+++++|+++|+++||++|++|||||||||+||++++|+.++++++...+..++.|+|.++.++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999988777778899999998889999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT 172 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 172 (642)
|||++||.++|++||+||++.|++++++....+...||+||+||||+||||++|+|.||+.+.+...++.|++.|++.|+
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~ 163 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 163 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeE
Confidence 99999999999999999999998887642234678999999999999999999999999986223679999999999999
Q ss_pred EEecCCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccCC
Q psy2391 173 IETINKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARGK 252 (642)
Q Consensus 173 v~~~~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~ 252 (642)
+++++..++||+|+|+|+++..+|++.++|+++|++||.|+++||++...+ +++|+ ...+|+++|+++|+|++++
T Consensus 164 i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~e-~~~~~----~~~~~~~in~~~~lw~~~~ 238 (559)
T 1y4s_A 164 VADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE-EKDGE----TVISWEKINKAQALWTRNK 238 (559)
T ss_dssp EEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEEE-CSTTS----CEEEEEECCCCCCGGGSCG
T ss_pred EeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc-ccccc----cccceEEEeCCccceecCc
Confidence 998866799999999999999999999999999999999999999995421 11232 1357899999999999999
Q ss_pred CCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCCCchhhhhh
Q psy2391 253 SEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDAEQLLPTYL 332 (642)
Q Consensus 253 ~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~~~llP~~l 332 (642)
+++++++|.+||++++++|.+||.++|++++|+++++|+||+|+.+|+++|++..+++++||||||||+|+|+++||.|+
T Consensus 239 ~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~~~llP~~l 318 (559)
T 1y4s_A 239 SEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYL 318 (559)
T ss_dssp GGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEEEEGGGSCGGG
T ss_pred ccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeecchhhhChHhH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred hceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcccCCcchHH
Q psy2391 333 RFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKE 412 (642)
Q Consensus 333 ~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g~~~D~~~~~ 412 (642)
+||+|||||+|||||||||+||+|+++++||++|++|++++|.++|++ ||+ +|++||++||.+||+|+++|+.|++
T Consensus 319 ~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~~~-d~e---~y~~f~~~f~~~lK~G~~~D~~~~~ 394 (559)
T 1y4s_A 319 RFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD-DAE---KYQTFWQQFGLVLKEGPAEDFANQE 394 (559)
T ss_dssp TTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-CHH---HHHHHHHHHHHHHTTSTTTCGGGHH
T ss_pred hheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-CHH---HHHHHHHHHhHHhhhhhccCHHHHH
Confidence 999999999999999999999999999999999999999999999999 899 9999999999999999999999999
Q ss_pred HhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCchhHHhhcccc
Q psy2391 413 RISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPK 492 (642)
Q Consensus 413 ~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iDe~~l~~l~~ 492 (642)
+|++||||+||.++++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|+|||+|++||||||+++|.+
T Consensus 395 ~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~ 474 (559)
T 1y4s_A 395 AIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTE 474 (559)
T ss_dssp HHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCC
T ss_pred HHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecChHHHHHHHHHHH
Confidence 99999999999865224789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHH
Q psy2391 493 FENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRM 572 (642)
Q Consensus 493 ~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~ 572 (642)
|+|++|++|+++++++++..+++ ++..++.++++++|++|+|++|+++|++|++|+||++||||+|++++|||++|+||
T Consensus 475 ~~~k~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~k~~L~~~v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~ 553 (559)
T 1y4s_A 475 FDGKPFQSVSKVDESLEKLADEV-DESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKL 553 (559)
T ss_dssp CSSSCCBCC-----------------------------------------------------------------------
T ss_pred hCCceEEecccccccccccchhh-hhhhhHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCEEEEeCCCCcCHHHHHH
Confidence 99999999999999876542222 22334457789999999999999999999999999999999999999999999999
Q ss_pred HHHccC
Q psy2391 573 LKAAGQ 578 (642)
Q Consensus 573 m~~~~~ 578 (642)
|++|+|
T Consensus 554 ~~~~~~ 559 (559)
T 1y4s_A 554 FAAAGQ 559 (559)
T ss_dssp ------
T ss_pred HHhcCC
Confidence 999975
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=2e-109 Score=896.83 Aligned_cols=397 Identities=38% Similarity=0.705 Sum_probs=356.7
Q ss_pred CceEEeecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccc-cccCCccEEE
Q psy2391 236 NEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD-RNKRNGIKLY 314 (642)
Q Consensus 236 ~~~~~~n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~-~~~~~~~~ly 314 (642)
.+|+.+|+++|||+++++++++++|.+||++++++|++||+|+|+++||+++|+|+||||+.+||++|. +..++||+||
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLY 90 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLY 90 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----CCCCCCSEEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhhhhhcCCeeEE
Confidence 357899999999999999999999999999999999999999999999999999999999999999996 4678999999
Q ss_pred EcceeeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHH
Q psy2391 315 VKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWK 394 (642)
Q Consensus 315 v~~v~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~ 394 (642)
||||||+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++|+ ||+ +|++||+
T Consensus 91 v~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~--d~e---~Y~kFw~ 165 (444)
T 3hjc_A 91 VRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAE--NKE---DYKQFYE 165 (444)
T ss_dssp ETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SHH---HHHHHHH
T ss_pred EeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHh--CHH---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995 499 9999999
Q ss_pred HHHHHHhhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCE
Q psy2391 395 EFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIE 474 (642)
Q Consensus 395 ~~~~~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~e 474 (642)
+||.+||+|+++|+.|+++|++||||+||.++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|++||+|
T Consensus 166 ~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~--~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~E 243 (444)
T 3hjc_A 166 QFGKNIKLGIHEDTANRKKLMELLRFYSTESG--EEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLE 243 (444)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHCCBCBTTTT--TSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCC
T ss_pred HHhHHHhccccccHHHHHHHHHheEeeeecCC--CCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcE
Confidence 99999999999999999999999999999874 3789999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCC
Q psy2391 475 VLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDS 554 (642)
Q Consensus 475 VL~l~d~iDe~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~s 554 (642)
||||++||||||+++|.+|+|++|++|+++++++++.++ +++..++.++++++|++|+|++|+++|++|++|+||++|
T Consensus 244 VL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~ee--ek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~s 321 (444)
T 3hjc_A 244 VLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEE--EKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTS 321 (444)
T ss_dssp EEEECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHH--HHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSS
T ss_pred EEEeCCchHHHHHHHHHHhCCceEEEeccccccchhhhh--hhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCC
Confidence 999999999999999999999999999999998764322 222334567789999999999999999999999999999
Q ss_pred CeEEEecCCCcchhHHHHHHHccCC------CCCCCceEEEcCCCHHHHHHhh------CcccHHHHHHHHHHHHHHcCC
Q psy2391 555 PACLVVDENEPSGNMIRMLKAAGQE------TPNSKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAEN 622 (642)
Q Consensus 555 Pa~~v~~e~~~s~~m~r~m~~~~~~------~~~~k~~LEINp~HplIkkL~~------~~~~~~~~~~~Lyd~All~~G 622 (642)
|||||++++|||++|+|||++|++. ++..+++|||||+||||++|.+ +++.++++|++|||+|+|++|
T Consensus 322 P~~lv~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G 401 (444)
T 3hjc_A 322 PCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSG 401 (444)
T ss_dssp SEEEEBCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEcCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999873 3467899999999999999986 356799999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcc
Q psy2391 623 GVLNDPMNFVKRLNEMLLI 641 (642)
Q Consensus 623 ~~l~d~~~f~~r~~~ll~~ 641 (642)
+.++||+.|++|+|+||.+
T Consensus 402 ~~ledp~~f~~ri~~ll~~ 420 (444)
T 3hjc_A 402 FQLEDPTGYAERINRMIKL 420 (444)
T ss_dssp CCCSCHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=6e-109 Score=888.62 Aligned_cols=390 Identities=42% Similarity=0.749 Sum_probs=345.8
Q ss_pred cCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccc-cccCCccEEEEcceeee
Q psy2391 243 QASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD-RNKRNGIKLYVKRVFIM 321 (642)
Q Consensus 243 ~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~-~~~~~~~~lyv~~v~i~ 321 (642)
.++|||+|+++++++++|.+||++++++|++||+|+|+++||+++|+|+||||+.+||++|. +..++||+||||||||+
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~ 81 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIM 81 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCEEEEETTEEEE
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhhhhhccceeEEeeeeEEe
Confidence 36799999999999999999999999999999999999999999999999999999999996 45789999999999999
Q ss_pred cCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q psy2391 322 DDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIK 401 (642)
Q Consensus 322 d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK 401 (642)
|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++| + ||+ .|++||++||.+||
T Consensus 82 d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la-~-d~e---~Y~~f~~~fg~~lK 156 (448)
T 3q6m_A 82 DNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA-E-DKE---NYKKFYEQFSKNIK 156 (448)
T ss_dssp SCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT-S-SHH---HHHHHHHHHHHHHH
T ss_pred cchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH-h-CHH---HHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 7 799 99999999999999
Q ss_pred hcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCC
Q psy2391 402 EGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDR 481 (642)
Q Consensus 402 ~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~ 481 (642)
+|+++|..|+++|++||||+||.+++ +++||+||++||+++|+.|||++|+|++++++|||+|.|++||+|||||++|
T Consensus 157 ~Gi~eD~~n~~~l~~LLrF~Ss~~~~--~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~ 234 (448)
T 3q6m_A 157 LGIHEDSQNRKKLSELLRYYTSASGD--EMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEP 234 (448)
T ss_dssp HHHHHCGGGHHHHHTTCEEEETTTTT--SCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECST
T ss_pred hhhcccHHHHHHHHHhhEeeeccCCC--ceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCc
Confidence 99999999999999999999998643 6899999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEec
Q psy2391 482 VDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVD 561 (642)
Q Consensus 482 iDe~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~ 561 (642)
|||||+++|.+|+|++|++|+++++++++.++ +++..++.++++++|++|+|++|+++|++|++|+||++||||+|++
T Consensus 235 iDe~~i~~L~ef~gk~~~sV~k~~l~l~~~ee--ek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~ 312 (448)
T 3q6m_A 235 IDEYCVQQLKEFEGKTLVSVTKEGLELPEDEE--EKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTS 312 (448)
T ss_dssp HHHHHTTTCCEETTEEEEETTBSCCCCCCCHH--HHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEEC
T ss_pred hHHHHHHHHHhhCCceEEEecccccCcccchh--hhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeC
Confidence 99999999999999999999999998764322 2223345567899999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHccC------CCCCCCceEEEcCCCHHHHHHhh------CcccHHHHHHHHHHHHHHcCCCCCCCHH
Q psy2391 562 ENEPSGNMIRMLKAAGQ------ETPNSKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAENGVLNDPM 629 (642)
Q Consensus 562 e~~~s~~m~r~m~~~~~------~~~~~k~~LEINp~HplIkkL~~------~~~~~~~~~~~Lyd~All~~G~~l~d~~ 629 (642)
++|||++|+|||++|+. .++..+|||||||+||||++|.+ +++.++++|++|||+|+|++|+.++||+
T Consensus 313 e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~ 392 (448)
T 3q6m_A 313 TYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQ 392 (448)
T ss_dssp SSSCCHHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHH
T ss_pred CcchhHHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHH
Confidence 99999999999999874 13568999999999999999986 3568999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy2391 630 NFVKRLNEMLLI 641 (642)
Q Consensus 630 ~f~~r~~~ll~~ 641 (642)
.|++|+|+||.+
T Consensus 393 ~f~~ri~~ll~~ 404 (448)
T 3q6m_A 393 THANRIYRMIKL 404 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-106 Score=867.66 Aligned_cols=388 Identities=39% Similarity=0.730 Sum_probs=363.3
Q ss_pred CccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCcccc-ccCCccEEEEcceeeec
Q psy2391 244 ASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDR-NKRNGIKLYVKRVFIMD 322 (642)
Q Consensus 244 ~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~-~~~~~~~lyv~~v~i~d 322 (642)
++|||+++++++++|+|.+||++++++|++||+|+|+++||+++++|+||||+.+|+++|++ ..++||+||||||||+|
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~d 80 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSCCCCCCCEEEETTEEEES
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhhhhccCCeEEEEeeeEecC
Confidence 36999999999999999999999999999999999999999999999999999999999964 45899999999999999
Q ss_pred CCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhh
Q psy2391 323 DAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKE 402 (642)
Q Consensus 323 ~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~ 402 (642)
+|++|||+||+||+|||||+|||||||||+||+|+++++||++|++|++++|.++|++ |+ +|++||++||.+||+
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~--~e---~y~kf~~~fg~~lK~ 155 (405)
T 2cge_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED--SE---QFEKFYSAFSKNIKL 155 (405)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTS--HH---HHHHHHHHHHHHHHH
T ss_pred chhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhC--HH---HHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999987 89 999999999999999
Q ss_pred cccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCc
Q psy2391 403 GIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRV 482 (642)
Q Consensus 403 g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~i 482 (642)
|+++|+.|+++|++||||+||.++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|+|||+|++||
T Consensus 156 G~~eD~~~~~~l~~lLrF~ss~~~--~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~i 233 (405)
T 2cge_A 156 GVHEDTQNRAALAKLLRYNSTKSV--DELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPI 233 (405)
T ss_dssp HHHHCTTTHHHHHTTCEECBSSCS--SSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHH
T ss_pred hhccCHHHHHHHHHhheeeecCCC--CceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCch
Confidence 999999999999999999999874 378999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccceEEEEeecCCCCCeEEEecC
Q psy2391 483 DEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDE 562 (642)
Q Consensus 483 De~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e 562 (642)
||+|+++|.+|+|++|++|+++ +++++.+ ++++..++.++++++|++|+|++|+++|.+|++|+||++||||+|+++
T Consensus 234 De~~i~~L~e~~gk~~~sV~~~-l~l~~~e--~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~ 310 (405)
T 2cge_A 234 DEYAFTQLKEFEGKTLVDITKD-FELEETD--EEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQ 310 (405)
T ss_dssp HHHHHHHHCBSSSBEEESSBCC-CCSSSST--HHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECS
T ss_pred HHHHHHHHHHhCCceeEEcccc-ccccccc--hhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEecc
Confidence 9999999999999999999999 8876422 122233456778999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHccCC------CCCCCceEEEcCCCHHHHHHhh----C---cccHHHHHHHHHHHHHHcCCCCCCCHH
Q psy2391 563 NEPSGNMIRMLKAAGQE------TPNSKPILEINPNHALIQRIQL----N---NDNIHNWSHILFDQALLAENGVLNDPM 629 (642)
Q Consensus 563 ~~~s~~m~r~m~~~~~~------~~~~k~~LEINp~HplIkkL~~----~---~~~~~~~~~~Lyd~All~~G~~l~d~~ 629 (642)
+|||++|+|||++|++. ++..+++|||||+||||++|.. + ++.++++|++|||+|+|++|+.++||+
T Consensus 311 ~~~s~~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~ 390 (405)
T 2cge_A 311 FGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPT 390 (405)
T ss_dssp SSCCHHHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHH
T ss_pred ccccHHHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHH
Confidence 99999999999999742 3467899999999999999985 2 346899999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy2391 630 NFVKRLNEMLLI 641 (642)
Q Consensus 630 ~f~~r~~~ll~~ 641 (642)
.|++|+|+||.+
T Consensus 391 ~f~~r~~~ll~~ 402 (405)
T 2cge_A 391 SFASRINRLISL 402 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 8
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=3.9e-83 Score=657.47 Aligned_cols=292 Identities=55% Similarity=0.958 Sum_probs=249.5
Q ss_pred CccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecC
Q psy2391 244 ASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDD 323 (642)
Q Consensus 244 ~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~ 323 (642)
++|||+++++++++|+|.+||++++++|++||+|+|+++||+++++|+||||+.+|+++|++..++||+||||||||+|+
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~~~~~~ikLYvrrVfI~D~ 81 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDD 81 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTSTTCCCSEEEEETTEEEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhhhhccCCeEEEEeceEeecc
Confidence 47999999999999999999999999999999999999999999999999999999999987778999999999999999
Q ss_pred CCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhhc
Q psy2391 324 AEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEG 403 (642)
Q Consensus 324 ~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~g 403 (642)
|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++|++ ||+ +|++||++||.+||+|
T Consensus 82 ~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~-d~e---~Y~kF~~~fg~~lK~G 157 (303)
T 2gq0_A 82 AEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD-DAE---KYQTFWQQFGLVLKEG 157 (303)
T ss_dssp EGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-CHH---HHHHHHHHHHHHHTTH
T ss_pred hhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhc-CHH---HHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999 999 9999999999999999
Q ss_pred ccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCch
Q psy2391 404 IGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVD 483 (642)
Q Consensus 404 ~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~iD 483 (642)
+++|+.|+++|++||||+||.++.+++++||+||++|||++|+.|||++|+|++++++|||+|.|++||+|||+|++|||
T Consensus 158 i~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iD 237 (303)
T 2gq0_A 158 PAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237 (303)
T ss_dssp HHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTH
T ss_pred hhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhH
Confidence 99999999999999999999865224789999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcccce--EEEEeecCCCCCeEEEec
Q psy2391 484 EWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAK--DVRVTYRLTDSPACLVVD 561 (642)
Q Consensus 484 e~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~~v~--~V~vs~rL~~sPa~~v~~ 561 (642)
|+|+++|.+|+|++|++|+++++++++++ ++.|+++|. +|.+|+||++||||+++.
T Consensus 238 e~~i~~L~e~~gk~f~sV~k~~l~l~~~~----------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLA----------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp HHHTTTCCEETTEEEEETTC------------------------------------------------------------
T ss_pred HHHHHHHHhcCCcceEEeeccccCccccc----------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999998876322 244577777 899999999999999654
No 9
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=3.3e-82 Score=646.33 Aligned_cols=287 Identities=44% Similarity=0.808 Sum_probs=239.8
Q ss_pred CccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccccc-cCCccEEEEcceeeec
Q psy2391 244 ASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRN-KRNGIKLYVKRVFIMD 322 (642)
Q Consensus 244 ~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~-~~~~~~lyv~~v~i~d 322 (642)
++|||+++++++++++|.+||++++++|++||+|+|+++||+++++|+||||+++|+++|.+. .++||+||||||||+|
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLYvrrVfI~d 80 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSSCCCCCCCEEEETTEEEES
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhhhhccCCeEEEEeeeEeec
Confidence 369999999999999999999999999999999999999999999999999999999999654 4899999999999999
Q ss_pred CCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHhh
Q psy2391 323 DAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKE 402 (642)
Q Consensus 323 ~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~lK~ 402 (642)
+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++|++ |+ .|++||++||.+||+
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d--~e---~Y~kf~~~fg~~lK~ 155 (288)
T 1hk7_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED--SE---QFEKFYSAFSKNIKL 155 (288)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTTS--HH---HHHHHHHHHHHHHHH
T ss_pred chhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhC--HH---HHHHHHHHHhHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999865 99 999999999999999
Q ss_pred cccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCCCc
Q psy2391 403 GIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRV 482 (642)
Q Consensus 403 g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d~i 482 (642)
|+++|..||++|++||||+||.+++ +++||+||++||+++|+.|||++|+|++++++|||+|.|+++|+|||+|++||
T Consensus 156 Gi~eD~~nr~~l~~LLrf~ss~~~~--~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~i 233 (288)
T 1hk7_A 156 GVHEDTQNRAALAKLLRYNSTKSVD--ELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPI 233 (288)
T ss_dssp HHHHCTTTHHHHHTTCCBEESSCSS--SCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHH
T ss_pred hhcccHHHHHHHHHHhccccccCCC--CcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCch
Confidence 9999999999999999999998652 78999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccccCCcceEEeecCCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHhcc
Q psy2391 483 DEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSE 540 (642)
Q Consensus 483 De~~l~~l~~~~~~~f~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~k~~L~~ 540 (642)
||+|+++|.+|+|++|++|+++ +++++.+++ ++..++.++++++|++|||++|++
T Consensus 234 De~~i~~L~e~~gk~~~sv~k~-~~l~~~~ee--k~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 234 DEYAFTQLKEFEGKTLVDITKD-FELEETDEE--KAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HHHHHHHHCEETTEEEEETTTC------------------------------------
T ss_pred HHHHHhhhhhcCCceeeecccc-ccccchhhh--hhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998 777643222 223334567899999999999974
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=4.7e-79 Score=618.20 Aligned_cols=262 Identities=44% Similarity=0.829 Sum_probs=247.9
Q ss_pred ecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccc-cccCCccEEEEcceee
Q psy2391 242 NQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD-RNKRNGIKLYVKRVFI 320 (642)
Q Consensus 242 n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~-~~~~~~~~lyv~~v~i 320 (642)
++++|||+++++++++|+|.+||++++++|++||+|+|+++||+++++|+||||+.+||++|. +..++|++||||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYv~rVfI 80 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFI 80 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC--------CCCEEEEETTEEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhhhhhcCCeeEEEEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999996 4578999999999999
Q ss_pred ecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHH
Q psy2391 321 MDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVI 400 (642)
Q Consensus 321 ~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~l 400 (642)
+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++| + ||+ .|++||++||.+|
T Consensus 81 ~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la-~-d~e---~Y~~f~~~fg~~l 155 (268)
T 3pry_A 81 MDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA-E-DKE---NYKKFYEAFSKNL 155 (268)
T ss_dssp ESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-T-SHH---HHHHHHHHHHHHH
T ss_pred ecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-h-CHH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 7 799 9999999999999
Q ss_pred hhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCC
Q psy2391 401 KEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTD 480 (642)
Q Consensus 401 K~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d 480 (642)
|+|+++|..|++++++||||+||.+++ +++||+||++||+++|+.|||++|+|++++++|||+|.|+++|+|||+|++
T Consensus 156 K~G~~eD~~~~~~l~~LLrf~ss~~~~--~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d 233 (268)
T 3pry_A 156 KLGIHEDSTNRRRLSELLRYHTSQSGD--EMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 233 (268)
T ss_dssp HHHHHHCGGGHHHHHHTCEEEETTTTT--SCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCS
T ss_pred HhHhhCCHHHHHHHHHHheeeeccCCC--ccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCC
Confidence 999999999999999999999998643 689999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhcccccCCcceEEeecCCCCCCC
Q psy2391 481 RVDEWMLSFIPKFENKELVSIAKGNLDLGN 510 (642)
Q Consensus 481 ~iDe~~l~~l~~~~~~~f~~v~~~~~~l~~ 510 (642)
||||+|+++|.+|+|++|++|+++++++++
T Consensus 234 ~iDe~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 234 PIDEYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp TTHHHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred chHHHHHHHHHhcCCceeeecccccCCCcc
Confidence 999999999999999999999999998763
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=8.1e-79 Score=614.82 Aligned_cols=256 Identities=47% Similarity=0.836 Sum_probs=240.4
Q ss_pred ecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCcccc-ccCCccEEEEcceee
Q psy2391 242 NQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDR-NKRNGIKLYVKRVFI 320 (642)
Q Consensus 242 n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~-~~~~~~~lyv~~v~i 320 (642)
|+++|||+++++++++|+|.+||++++++|++||+|+|+++||+++++|+||||+.+|+++|.+ ..++||+||||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI 80 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFI 80 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC----CCEEEEETTEEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhhhhccCCeEEEEeeeEe
Confidence 7889999999999999999999999999999999999999999999999999999999999964 458999999999999
Q ss_pred ecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHH
Q psy2391 321 MDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVI 400 (642)
Q Consensus 321 ~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~~l 400 (642)
+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|.++|++ || .|++||++||.+|
T Consensus 81 ~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d--~e---~y~~f~~~fg~~l 155 (260)
T 1usu_A 81 TDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED--SE---QFEKFYSAFSKNI 155 (260)
T ss_dssp ESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTC--HH---HHHHHHHHHHHHH
T ss_pred ccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC--HH---HHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999987 89 9999999999999
Q ss_pred hhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEeCC
Q psy2391 401 KEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTD 480 (642)
Q Consensus 401 K~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l~d 480 (642)
|+|+++|+.|+++|++||||+||.++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|+|||+|+|
T Consensus 156 K~G~~eD~~n~~~l~~lLrf~ss~~~--~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d 233 (260)
T 1usu_A 156 KLGVHEDTQNRAALAKLLRYNSTKSV--DELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTD 233 (260)
T ss_dssp HHHHHHCTTTHHHHHTTCEEEETTEE--EEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECS
T ss_pred cchhccCHHHHHHHHHhhEeeecCCC--CceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCC
Confidence 99999999999999999999999864 3689999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhcccccCCcceEEeecC
Q psy2391 481 RVDEWMLSFIPKFENKELVSIAKG 504 (642)
Q Consensus 481 ~iDe~~l~~l~~~~~~~f~~v~~~ 504 (642)
||||+|+++|.+|+|++|++|+++
T Consensus 234 ~iDe~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 234 PIDEYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHHHHHHHHCEETTEEEEETTCC
T ss_pred chHHHHHHHHHhhCCceEEecccc
Confidence 999999999999999999999886
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=4.3e-77 Score=606.21 Aligned_cols=258 Identities=36% Similarity=0.704 Sum_probs=231.2
Q ss_pred ecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCccc---cccCCccEEEEcce
Q psy2391 242 NQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD---RNKRNGIKLYVKRV 318 (642)
Q Consensus 242 n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~---~~~~~~~~lyv~~v 318 (642)
|+++|||+++++++++|+|.+||++++++|++||+|+|+++||+++++|+||||+.+|+++|. +..+++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 678999999999999999999999999999999999999999999999999999999999863 45689999999999
Q ss_pred eeecCCCchhhhhhhceeeeecCCCCCCccchhhhccChhHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHH
Q psy2391 319 FIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQ 398 (642)
Q Consensus 319 ~i~d~~~~llP~~l~Fv~Gvvds~dl~lNvSRE~lq~~~~l~~i~~~l~~~i~~~l~~la~~~~~e~~~~y~~f~~~~~~ 398 (642)
||+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++|++++|+++|++ ||| +|++||++||.
T Consensus 81 fI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~-d~e---~y~kf~~~fg~ 156 (263)
T 1y6z_A 81 FINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKET-GGD---KWTKFLNTFGK 156 (263)
T ss_dssp EEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHH-CSH---HHHHHHHHHHH
T ss_pred EeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhh-hHH---HHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999 999 99999999999
Q ss_pred HHhhcccCCcchHHHhcccceeeecCCCCCCCcccHHHHHHhhhcCCCeEEEEEcCCHhhHhcCcchHHHHhcCCEEEEe
Q psy2391 399 VIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLL 478 (642)
Q Consensus 399 ~lK~g~~~D~~~~~~~~~ll~f~ts~~~~~~~~~sL~eY~~rm~~~q~~Iyy~~~~~~~~~~~sp~lE~~~~kg~eVL~l 478 (642)
+||+|+++|+.|+++|++||||+||.+++ +++||+||++|||++|+.|||++|++++++++|||+|.|+++|+|||+|
T Consensus 157 ~lK~G~~eD~~~~~~l~~lLrf~ss~~~~--~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l 234 (263)
T 1y6z_A 157 YLKIGVVEDKENQEEIASLVEFYSINSGD--KKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFS 234 (263)
T ss_dssp HHHHHHHHCGGGHHHHHTTCEECBTTTTT--SCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEE
T ss_pred HHccccccCHHHHHHHHHhheeeeccCCC--ceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEe
Confidence 99999999999999999999999998642 6899999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhhcc--cccCCcceEEeecCC
Q psy2391 479 TDRVDEWMLSFI--PKFENKELVSIAKGN 505 (642)
Q Consensus 479 ~d~iDe~~l~~l--~~~~~~~f~~v~~~~ 505 (642)
++||||+|+++| .+|+|++|++|++++
T Consensus 235 ~~~iDe~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 235 LEPIDEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp CSHHHHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred CCcHHHHHHHHhhhhccCCceEEecCCCC
Confidence 999999999999 599999999998864
No 13
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=5e-54 Score=430.01 Aligned_cols=204 Identities=44% Similarity=0.781 Sum_probs=185.5
Q ss_pred ccccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccC------------------------
Q psy2391 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFIS------------------------ 66 (642)
Q Consensus 11 ~~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~------------------------ 66 (642)
...+++.||+|+++||+||+++|||+++||||||||||+|||+|+| .++++++..
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 3468999999999999999999999999999999999999999999 777755432
Q ss_pred -------------CCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhhhcCcccccccccccc
Q psy2391 67 -------------TDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFG 133 (642)
Q Consensus 67 -------------~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fG 133 (642)
....++.|+|.+|+++++|+|.|||+|||++||.++|++||+||++.|+++++.+ ..+...|||||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~-~~d~~~IGqFG 179 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEG-KADSNLIGQFG 179 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTT-SSCTTCGGGSC
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcc-cccccccCccc
Confidence 1234578999999999999999999999999999999999999999999988753 25788999999
Q ss_pred chhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecC--------CCCCccEEEEEecCchhhccCHHHHHHH
Q psy2391 134 VGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETIN--------KTNRGTDITLYLRSKEEEYLSSWKLKSI 205 (642)
Q Consensus 134 iGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~--------~~~~GT~I~l~lk~~~~e~~~~~~i~~~ 205 (642)
|||||+||||++|+|+|| . ++.+|.|+|+|++.|+|++++ ..++||+|+||||+++.+|+++++|+++
T Consensus 180 VGFySaFmVAdkV~V~Sk-~---dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~l 255 (272)
T 3ied_A 180 VGFYSSFLVSNRVEVYTK-K---EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKEL 255 (272)
T ss_dssp CGGGGGGGTEEEEEEEEE-S---SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHH
T ss_pred ceeheeeccCCEEEEEEc-C---CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHH
Confidence 999999999999999999 3 578999999999999999875 4689999999999999999999999999
Q ss_pred HHHhhccCCCCeEee
Q psy2391 206 IRKYSDHISFPIKMY 220 (642)
Q Consensus 206 i~~ys~~l~~pI~~~ 220 (642)
|++||.|++|||+++
T Consensus 256 ikkys~fi~~PI~l~ 270 (272)
T 3ied_A 256 IKKYSEFIKFPIEIW 270 (272)
T ss_dssp HHHHCTTCCSCEEEC
T ss_pred HHHHHhCCCCCeEEE
Confidence 999999999999985
No 14
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=4e-52 Score=417.84 Aligned_cols=205 Identities=46% Similarity=0.788 Sum_probs=191.7
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.+++.||+|+++|+++|+++|||++++|||||||||+||++++|+.++++++.......+.|+|.+|.++++|+|.|||+
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 95 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGI 95 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCC
Confidence 58999999999999999999999999999999999999999999999999887777778899999998889999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT 172 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 172 (642)
|||++||.++|++||+||++.|+++++++ .+...||||||||||+||||++|+|.||+. ++.++.|+|++++.|+
T Consensus 96 GMt~edL~~~LgtIA~Sgtk~f~e~~~~~--~d~~~IGqFGvGfySaf~vadkv~V~Sk~~---~~~~~~W~s~~~g~ft 170 (239)
T 3nmq_A 96 GMTKADLINNLGTIAKSGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVVVITKHN---DDEQYAWESSAGGSFT 170 (239)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECT---TSCCEEEEECSTTEEE
T ss_pred CCCHHHHHHHHHHHhcccchhhhhhhccc--CCcccccccCcccccccccCCEEEEEEeeC---CCceeEEEECCCCcEE
Confidence 99999999999999999999999988752 578899999999999999999999999986 4679999999999999
Q ss_pred EEecC--CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeec
Q psy2391 173 IETIN--KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222 (642)
Q Consensus 173 v~~~~--~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~ 222 (642)
|++++ ..++||+|+||||+++.+|+++++|+++|++||+|++|||++..+
T Consensus 171 i~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~ 222 (239)
T 3nmq_A 171 VRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLE 222 (239)
T ss_dssp EEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCC
T ss_pred EEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeee
Confidence 99874 458999999999999999999999999999999999999999654
No 15
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=4.4e-52 Score=425.31 Aligned_cols=213 Identities=44% Similarity=0.727 Sum_probs=195.3
Q ss_pred ccccccccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEE
Q psy2391 7 ESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTIN 86 (642)
Q Consensus 7 ~~~~~~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~ 86 (642)
+.+....+++.||+|+++||++|+++|||++++|||||||||+||++++|+.++++++.....+.+.|+|.++.++++|+
T Consensus 17 ~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLt 96 (281)
T 3peh_A 17 QGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILS 96 (281)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEE
T ss_pred HHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEE
Confidence 44566778999999999999999999999999999999999999999999999999988777888999999999889999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEe
Q psy2391 87 ISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESE 166 (642)
Q Consensus 87 I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~ 166 (642)
|.|||+|||+++|.++|++||+||++.|+++++.+ ..+...||||||||||+||||++|+|.||+.+ +.++.|++.
T Consensus 97 I~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~-~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~---~~~~~Wes~ 172 (281)
T 3peh_A 97 ITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKS-GGDMSLIGQFGVGFYSAFLVADKVIVYTKNND---DEQYIWEST 172 (281)
T ss_dssp EEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHT-TCCSTTTTTTTCGGGGGGGTEEEEEEEEECTT---SCCEEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhcc-ccccccccccCccchhhccccCEEEEEEecCC---CCEEEEEEC
Confidence 99999999999999999999999999999988742 24678999999999999999999999999985 579999999
Q ss_pred CCcceEEEecC---CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeecc
Q psy2391 167 GSGNFTIETIN---KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKET 223 (642)
Q Consensus 167 ~~~~~~v~~~~---~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~ 223 (642)
+++.|+|++.+ ..++||+|+|+|+++..+|+++++|+++|++||+|++|||+++.++
T Consensus 173 g~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k 232 (281)
T 3peh_A 173 ADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHEN 232 (281)
T ss_dssp TTSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred CCccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeee
Confidence 99999999874 4689999999999999999999999999999999999999997653
No 16
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=1e-47 Score=389.47 Aligned_cols=206 Identities=47% Similarity=0.798 Sum_probs=190.8
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..+++.||+|+++|+++|+++||+++++|||||||||+||++++|+.++++++.....+.+.|+|.++.+.++|+|.|||
T Consensus 36 ~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG 115 (256)
T 3o0i_A 36 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 115 (256)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCC
Confidence 45899999999999999999999999999999999999999999999999988777777889999999888899999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF 171 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 171 (642)
+||+++||..+|++||+||++.|.+.++.+ .+...||+||+||||+|+||++|+|.||+.+ +.++.|++.+++.|
T Consensus 116 ~GMt~edl~~~l~~ia~S~~~~f~~~L~~~--~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~---~~g~~w~s~gg~~~ 190 (256)
T 3o0i_A 116 IGMTKADLINNLGTIAKSGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHND---DEQYAWESSAGGSF 190 (256)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTT---SCEEEEEECSTTEE
T ss_pred CCcCHHHHHHHHHhhccccccchhhhhccc--CCccccCCCcchHHHhhccCCeEEEEEcCCC---CceEEEEEeccceE
Confidence 999999999999999999999998877532 4678999999999999999999999999874 67999999999999
Q ss_pred EEEecC--CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeec
Q psy2391 172 TIETIN--KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222 (642)
Q Consensus 172 ~v~~~~--~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~ 222 (642)
++++++ ..++||+|+|+||.+..+|++.++|+++|++||+|+++||+++..
T Consensus 191 ~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~ 243 (256)
T 3o0i_A 191 TVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVE 243 (256)
T ss_dssp EEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC
T ss_pred EEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeee
Confidence 999863 458999999999999999999999999999999999999999654
No 17
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=9.7e-48 Score=394.51 Aligned_cols=208 Identities=47% Similarity=0.802 Sum_probs=190.6
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..+++.||+++++|+++|+++||+++++|||||||||+||++++|+.++++++.......+.|+|.++.+..+|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 45889999999999999999999999999999999999999999999999998877777889999998888899999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCc---cccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCC
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQ---KKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGS 168 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~---~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~ 168 (642)
+||++++|..+|++||+||++.|+++++... ..+...||||||||||+||||++|+|.||+.+ +.++.|++++
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~---~~~~~w~s~g- 159 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN---DTQHIWESDS- 159 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTT---SCCEEEEECS-
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecC---CcEEEEEEeC-
Confidence 9999999999999999999999998886320 14678999999999999999999999999985 4689999998
Q ss_pred cceEEEecC---CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeecc
Q psy2391 169 GNFTIETIN---KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKET 223 (642)
Q Consensus 169 ~~~~v~~~~---~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~~ 223 (642)
|.|++.+.. ..++||+|+|+|+++..+|++.++|+++|++||+|++|||+++..+
T Consensus 160 g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k 217 (269)
T 1qy5_A 160 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 217 (269)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEEC
T ss_pred CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeee
Confidence 899998764 3589999999999999999999999999999999999999997643
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=5.7e-47 Score=380.24 Aligned_cols=208 Identities=46% Similarity=0.788 Sum_probs=189.3
Q ss_pred cccccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEe
Q psy2391 10 IKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISD 89 (642)
Q Consensus 10 ~~~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~D 89 (642)
.+..+++.||+|+++|+++|+++||+++++|||||||||+||++++|+.++++++.....+.+.|+|.++.+..+|+|.|
T Consensus 6 ~~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~D 85 (228)
T 3t0h_A 6 EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVD 85 (228)
T ss_dssp --CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEe
Confidence 34568999999999999999999999999999999999999999999999998877666677899999988888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc
Q psy2391 90 NGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG 169 (642)
Q Consensus 90 nGiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~ 169 (642)
||+||+++||..+|++||+|+++.|.+.++++ .+...+|+||+||+|+|+||++|+|.||+.+ +.++.|++.+++
T Consensus 86 nG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~--~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~---~~~~~w~~~g~~ 160 (228)
T 3t0h_A 86 TGIGMTKADLINNLGTIAKSGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHND---DEQYAWESSAGG 160 (228)
T ss_dssp CSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTT---SCEEEEEECSTT
T ss_pred CCCCCCHHHHHHHHHhhccccchhhhhhhccc--CCcccCCCCChhHHHHhccCCEEEEEEecCC---CCcEEEEEcCCc
Confidence 99999999999999999999999988777532 4678999999999999999999999999874 569999999999
Q ss_pred ceEEEecC--CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeec
Q psy2391 170 NFTIETIN--KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222 (642)
Q Consensus 170 ~~~v~~~~--~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~ 222 (642)
.|++++++ ..++||+|+|+||++..||++.++|+++|++||+|+++||++...
T Consensus 161 ~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~ 215 (228)
T 3t0h_A 161 SFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVE 215 (228)
T ss_dssp EEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC
T ss_pred eEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeec
Confidence 99999864 458999999999999999999999999999999999999999654
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1.6e-46 Score=380.08 Aligned_cols=208 Identities=47% Similarity=0.804 Sum_probs=175.9
Q ss_pred ccccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeC
Q psy2391 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDN 90 (642)
Q Consensus 11 ~~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~Dn 90 (642)
...+++.||+++++|+++|+++||++|++|||||||||+||++++|+..++++++......+.|+|.++.++.+|+|.||
T Consensus 7 ~~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~Dn 86 (236)
T 2gqp_A 7 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDT 86 (236)
T ss_dssp HTTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEEC
Confidence 35688999999999999999999999999999999999999999999999998877677778999999888889999999
Q ss_pred CCCCCHHHHHHHHHHHHhccchhhHhhhhcCc---cccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeC
Q psy2391 91 GIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQ---KKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEG 167 (642)
Q Consensus 91 GiGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~---~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~ 167 (642)
|+||+++||.++|++||+||++.|+++++... ..+...||+|||||||+||+|++|+|.||+.+ +.++.|++++
T Consensus 87 G~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~---~~~~~w~~~g 163 (236)
T 2gqp_A 87 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN---DTQHIWESDS 163 (236)
T ss_dssp SCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTT---SCCEEEEESS
T ss_pred CcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCC---CceEEEEEeC
Confidence 99999999999999999999999988876321 14678999999999999999999999999986 3689999998
Q ss_pred CcceEEEecC---CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeec
Q psy2391 168 SGNFTIETIN---KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222 (642)
Q Consensus 168 ~~~~~v~~~~---~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~ 222 (642)
+.|++++.. ..++||+|+|+|+++..+|++.++|++++++||+|+++||++..+
T Consensus 164 -g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~ 220 (236)
T 2gqp_A 164 -NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSS 220 (236)
T ss_dssp -SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred -CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeee
Confidence 889998874 357999999999999999999999999999999999999999654
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=1.9e-43 Score=354.63 Aligned_cols=205 Identities=43% Similarity=0.764 Sum_probs=186.4
Q ss_pred ccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCC
Q psy2391 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGI 92 (642)
Q Consensus 13 ~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGi 92 (642)
.+++.||+++++|+++|+++||+++++|||||||||+||++++|+..+++++.......+.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 47899999999999999999999999999999999999999999998888776655667788888887778999999999
Q ss_pred CCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceE
Q psy2391 93 GMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFT 172 (642)
Q Consensus 93 GMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 172 (642)
||+++||..+|++||+||++.|.++++. ..+...||+||+||||+|++|++|+|.|++.+ ..++.|++++++.|+
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~--~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~---~~~~~~~~~~~~~~~ 157 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA--GADVSMIGQFGVGFYSLFLVADRVQVISKSND---DEQYIWESNAGGSFT 157 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTT--TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT---SCCEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhc--cCCcccCCccchhHHHhhhcCCeeEEEEecCC---CceeEEEeCCCCceE
Confidence 9999999999999999999999888864 25778999999999999999999999999875 458999999989999
Q ss_pred EEecC---CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeeec
Q psy2391 173 IETIN---KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222 (642)
Q Consensus 173 v~~~~---~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~~ 222 (642)
+++.. ..++||+|+|+|+++..+|++.++|++++++||+|+++||+++.+
T Consensus 158 i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~ 210 (220)
T 2wer_A 158 VTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVT 210 (220)
T ss_dssp EEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCC
T ss_pred eecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 98864 458999999999999899999999999999999999999999543
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=6.1e-43 Score=358.52 Aligned_cols=205 Identities=46% Similarity=0.795 Sum_probs=186.7
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..+++.||+++++|+++|+++||++|++|||||||||+||++++|+..+.+++.......+.|.|..+.+..+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 45889999999999999999999999999999999999999999999888887665566788888888777899999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF 171 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~ 171 (642)
+||+++||..+|++||+||++.|+++++. ..+...||+||+||||+|++|++|+|.|++.+ ..++.|++.+++.|
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~--~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~---~~~~~w~~~~~~~~ 198 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQA--GADISMIGQFGVGFYSAYLVAEKVTVITKHND---DEQYAWESSAGGSF 198 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHT--TCCGGGGGGGTCGGGGHHHHEEEEEEEEECTT---SCCEEEEECSTTEE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhcc--ccchhhcCCCCCCccccccCCCEEEEEEecCC---CceEEEEEcCCceE
Confidence 99999999999999999999999888764 24678999999999999999999999999975 46899999998899
Q ss_pred EEEecC--CCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEeee
Q psy2391 172 TIETIN--KTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYK 221 (642)
Q Consensus 172 ~v~~~~--~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~~ 221 (642)
++++.+ ..++||+|+|+|+++..+|++.++|++++++||+|+++||+++.
T Consensus 199 ~i~~~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~ 250 (264)
T 1yc1_A 199 TVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFV 250 (264)
T ss_dssp EEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECC
T ss_pred EEeecCCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEee
Confidence 998863 45899999999999999999999999999999999999999954
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=6.1e-42 Score=346.66 Aligned_cols=207 Identities=58% Similarity=0.979 Sum_probs=187.1
Q ss_pred cccccceeeehhHHHHHHHHhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCC
Q psy2391 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNG 91 (642)
Q Consensus 12 ~~~~~~F~~e~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 91 (642)
..+++.|++++++|+++|+++||++|.+|||||||||+||++++|+..+.++++......+.|.|.++.++..|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 34789999999999999999999999999999999999999999999888877766666788999988888899999999
Q ss_pred CCCCHHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCC--CceEEEEEeCCc
Q psy2391 92 IGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPI--TEGVLWESEGSG 169 (642)
Q Consensus 92 iGMt~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~--~~~~~w~~~~~~ 169 (642)
+||+++||..+|++||+||++.|.++++++...+...+|+||+||+|+|++|++|+|.|++.+ . ..++.|.+++++
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~--~~~~~~~~w~~~~~~ 180 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAG--EKPENGVFWESAGEG 180 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTT--SCGGGEEEEEECSSS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCC--CCCceeEEEEecCCC
Confidence 999999999999999999999888766522123568999999999999999999999999986 5 679999999988
Q ss_pred ceEEEecCCCCCccEEEEEecCchhhccCHHHHHHHHHHhhccCCCCeEee
Q psy2391 170 NFTIETINKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMY 220 (642)
Q Consensus 170 ~~~v~~~~~~~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~~l~~pI~~~ 220 (642)
.|++.+.+..++||+|+|+|+++..+|++.++|++++++||+|+++||+++
T Consensus 181 ~~~i~~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~ 231 (235)
T 2ior_A 181 EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIE 231 (235)
T ss_dssp EEEEEEECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC
T ss_pred cEEEeeCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEec
Confidence 999988666689999999999988999999999999999999999999984
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=100.00 E-value=3.7e-34 Score=260.43 Aligned_cols=112 Identities=44% Similarity=0.779 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcccceEEEEeecCCCCCeEEEecCCCcchhHHHHHHHccCCCCCCCceEEEcCCCHHHHHHhh--CcccH
Q psy2391 529 NLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQETPNSKPILEINPNHALIQRIQL--NNDNI 606 (642)
Q Consensus 529 ~L~~~~k~~L~~~v~~V~vs~rL~~sPa~~v~~e~~~s~~m~r~m~~~~~~~~~~k~~LEINp~HplIkkL~~--~~~~~ 606 (642)
.+++|+|++|+++|.+|++|+||++||||||++++|||++|||||++|+++++..+|||||||+||||++|.+ +++.+
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~~~~~k~~LEINp~HplIk~L~~~~~~~~~ 91 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKF 91 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSCCCCCCCEEEECTTSHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccccccCCeeeeECCCCHHHHHHHHhcChHHH
Confidence 5899999999999999999999999999999999999999999999999987889999999999999999986 66779
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhc
Q psy2391 607 HNWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640 (642)
Q Consensus 607 ~~~~~~Lyd~All~~G~~l~d~~~f~~r~~~ll~ 640 (642)
+++|++|||+|+|++|+.++||+.|++|+|+||.
T Consensus 92 k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 92 SEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.94 E-value=8.8e-27 Score=247.33 Aligned_cols=274 Identities=18% Similarity=0.248 Sum_probs=192.2
Q ss_pred HhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhc
Q psy2391 31 HSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAKS 109 (642)
Q Consensus 31 ~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~S 109 (642)
-....++..+|+|||+||+||++ ..|.|.++.++ ..|+|.|||+||+++++...+.++++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA------------------TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCC------------------CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 44567899999999999999973 36777766554 589999999999999999999999887
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc-ceEEEecCCCCCccEEEEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG-NFTIETINKTNRGTDITLY 188 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~-~~~v~~~~~~~~GT~I~l~ 188 (642)
....+ +.+ .....+|.+|+|++|+++++ +++|.|++.+ +..+|.|..+|+. ...+.+. ..++||+|++.
T Consensus 81 K~~~~-~d~-----~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~--~~~~~~~~~~g~~~~~~~~~~-~~~~GT~V~v~ 150 (333)
T 1b63_A 81 KIASL-DDL-----EAIISLGFRGEALASISSVS-RLTLTSRTAE--QQEAWQAYAEGRDMNVTVKPA-AHPVGTTLEVL 150 (333)
T ss_dssp SCCSH-HHH-----HTCCSSCCSSCHHHHHHTTS-EEEEEEECTT--CSSEEEEEEETTTTEEEEEEE-CCCSEEEEEEE
T ss_pred Ccccc-chh-----hhccccCccccchhhhhcCC-cEEEEEecCC--CceEEEEEEcCCcceEeeecc-cCCCCCEEEEe
Confidence 32111 011 12357899999999999998 8999999986 5668888777765 4556664 34899999997
Q ss_pred ------------ecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEeecCccccccCCC--
Q psy2391 189 ------------LRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVINQASALWARGKS-- 253 (642)
Q Consensus 189 ------------lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~~-- 253 (642)
++....+| .+|.+++++|+- ..| +.+ .+.++++++|..++.
T Consensus 151 ~Lf~n~P~r~kflk~~~~e~---~~i~~~~~~~al--~~p~v~~-------------------~l~~ng~~~~~~~~~~~ 206 (333)
T 1b63_A 151 DLFYNTPARRKFLRTEKTEF---NHIDEIIRRIAL--ARFDVTI-------------------NLSHNGKIVRQYRAVPE 206 (333)
T ss_dssp STTTTCHHHHHTCCCHHHHH---HHHHHHHHHHHH--HCTTCEE-------------------EEEETTEEEEEECCCCT
T ss_pred cccccchhhhhhhccHHHHH---HHHHHHHHHHhc--cCCCcEE-------------------EEEECCEEEEecCCCCC
Confidence 34444455 789999999994 333 544 334455556655542
Q ss_pred -CCCHHHHHHHHhhhccCCCCCceeeecccccceEEEEEEEeeCCCCCCcccccc-CCccEEEEcceeeecCC-------
Q psy2391 254 -EITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNK-RNGIKLYVKRVFIMDDA------- 324 (642)
Q Consensus 254 -~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~-~~~~~lyv~~v~i~d~~------- 324 (642)
....+.....|+. .+...+.+++...++ +.+.|++..|... +.. +..+.+|||+|+|.+..
T Consensus 207 ~~~~~~~i~~i~G~---~~~~~li~i~~~~~~-~~v~G~i~~p~~~------~~~~~~~~~~fvNgR~V~~~~l~~ai~~ 276 (333)
T 1b63_A 207 GGQKERRLGAICGT---AFLEQALAIEWQHGD-LTLRGWVADPNHT------TPALAEIQYCYVNGRMMRDRLINHAIRQ 276 (333)
T ss_dssp TCCTHHHHHHHHCH---HHHHHEEEEEEEETT-EEEEEEEECGGGC------CTTGGGCEEEEETTEECCCHHHHHHHHH
T ss_pred CchHHHHHHHHhCh---hhHhheEEEEecCCC-EEEEEEEEcCccc------cCCCCCcEEEEECCEEecCHHHHHHHHH
Confidence 2234555555643 222346777776665 8999998888743 344 67899999999998863
Q ss_pred --Cc-----hhhhhhhceeeeecCCCCCCccc---hhhhccC--hhHHHHHHHHHH
Q psy2391 325 --EQ-----LLPTYLRFVKGVIDSNNLPLNVS---REILQES--RDVKVIREGSTK 368 (642)
Q Consensus 325 --~~-----llP~~l~Fv~Gvvds~dl~lNvS---RE~lq~~--~~l~~i~~~l~~ 368 (642)
.. -.|.++.|+. +|++.+|+||. ||..-.+ .++..|++.+.+
T Consensus 277 ~y~~~l~~~~~P~~~l~l~--~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~~ 330 (333)
T 1b63_A 277 ACEDKLGADQQPAFVLYLE--IDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLS 330 (333)
T ss_dssp HHHHHSSSCCCCCEEEEEE--CCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCcEEEEEEE--eCchhccceECCCcCEEEeCCHHHHHHHHHHHHHH
Confidence 22 2366777888 99999999994 3433222 244555544433
No 25
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=236.58 Aligned_cols=281 Identities=18% Similarity=0.223 Sum_probs=180.7
Q ss_pred HHHHHH-HhcCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q psy2391 25 VLQLMI-HSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITN 102 (642)
Q Consensus 25 ll~ll~-~~LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~ 102 (642)
+...+. ......+..+|+|||+||+||. +..|.|.++.++ ..|+|.|||+||+++++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~------------------a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAK------------------STSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcC------------------CCEEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 334443 3345678999999999999996 235666665544 46999999999999999877
Q ss_pred HHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcce-EEEecCCCCC
Q psy2391 103 LGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF-TIETINKTNR 181 (642)
Q Consensus 103 l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~v~~~~~~~~ 181 (642)
+..+++|....+ + + .......|.+|+|+.|+.+++ +++|+||+.+ +..++.|...++... .++++ ..++
T Consensus 78 ~~~~~tsK~~~~-~----d-l~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~--~~~~~~~~~~~G~~~~~~~~~-~~~~ 147 (348)
T 3na3_A 78 CERFTTSKLQSF-E----D-LASISTYGFRGEALASISHVA-HVTITTKTAD--GKCAYRASYSDGKLKAPPKPC-AGNQ 147 (348)
T ss_dssp TSTTCCSSCCCC---------------CCTTCHHHHHHHSS-EEEEEEECTT--CSSEEEEEEETTEESSCCEEE-CCCS
T ss_pred hccccccccCcc-h----h-hhccccCCcCChHHHHhhccc-EEEEEEEECC--CCceEEEEEeCCEEeeeeeEe-cCCC
Confidence 766666622111 0 0 112346799999999999997 8999999987 678999998765422 24554 3489
Q ss_pred ccEEEE------------EecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEeecCccc-
Q psy2391 182 GTDITL------------YLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVINQASAL- 247 (642)
Q Consensus 182 GT~I~l------------~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~n~~~~i- 247 (642)
||+|++ +|+....|| .+|.+++++|+ +..| |.+ .+.++++..
T Consensus 148 GTtV~v~~LF~n~P~R~k~lk~~~~e~---~~i~~~l~~~A--l~~p~v~f-------------------~l~~~g~~~~ 203 (348)
T 3na3_A 148 GTQITVEDLFYNIATRRKALKNPSEEY---GKILEVVGRYS--VHNAGISF-------------------SVKKQGETVA 203 (348)
T ss_dssp EEEEEEESTTTTCHHHHHTSCCHHHHH---HHHHHHHHHHH--HHCTTCEE-------------------EEEETTCSSC
T ss_pred CcEEEECcccccCchhhhhccccHHHH---HHHHHHHHHHH--hhCCCeEE-------------------EEEECCEEEE
Confidence 999999 356666666 79999999999 4444 655 334444443
Q ss_pred -cccCCCCCCHHHHHHHHhhhccCCCCCceeeeccccc-ceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecCC-
Q psy2391 248 -WARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEG-RNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDDA- 324 (642)
Q Consensus 248 -w~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~~eg-~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~~- 324 (642)
|..++..-..+.....|+. .+...|..+....++ .+.++|++..|... ..+..+.+|||+|+|.+..
T Consensus 204 ~~~~~~~~~~~~~i~~i~G~---~~~~~l~~v~~~~~~~~~~i~G~is~p~~~-------~~~~~q~~fVNgR~v~~~~l 273 (348)
T 3na3_A 204 DVRTLPNASTVDNIRSIFGN---AVSRELIEIGCEDKTLAFKMNGYISNANYS-------VKKCIFLLFINHRLVESTSL 273 (348)
T ss_dssp SEECCTTCCHHHHHHHHHCH---HHHTTEEEEEEEEGGGTEEEEEEEECSSCC-------BSSCEEEEEETTEECCCTTH
T ss_pred EeecCCCCCHHHHHHHHhCh---HhHhhcEEEEeecCCccEEEEEEEeCCccC-------CCcccEEEEECCeEecCHHH
Confidence 3333433445667777765 333457777766543 48999988888642 2345789999999999884
Q ss_pred --------Cch-----hhhhhhceeeeecCCCCCCccc---hhhh--ccChhHHHHHHHHHHH
Q psy2391 325 --------EQL-----LPTYLRFVKGVIDSNNLPLNVS---REIL--QESRDVKVIREGSTKR 369 (642)
Q Consensus 325 --------~~l-----lP~~l~Fv~Gvvds~dl~lNvS---RE~l--q~~~~l~~i~~~l~~~ 369 (642)
+++ .|.++.|+. +|++.+|+||. ||.. .++.++..|++.+.+.
T Consensus 274 ~~ai~~~y~~~l~~~~~P~~~L~l~--~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~~ 334 (348)
T 3na3_A 274 RKAIETVYAAYLPKNTHPFLYLSLE--ISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESK 334 (348)
T ss_dssp HHHHHHHHHTTSCTTCBCEEEEEEE--CC----------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCceEEEEEEE--eChhheeeeeCCCcCEEEEcCHHHHHHHHHHHHHHH
Confidence 233 477888898 99999999998 6643 4445667666665554
No 26
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.92 E-value=2.6e-25 Score=238.33 Aligned_cols=291 Identities=19% Similarity=0.229 Sum_probs=175.9
Q ss_pred hhHHHHHHHHhcCCC-----chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCC-CCEEEEEeCCCCCC
Q psy2391 22 VKPVLQLMIHSLYSN-----KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKD-NRTINISDNGIGMN 95 (642)
Q Consensus 22 ~~~ll~ll~~~LYs~-----~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~-~~~i~I~DnGiGMt 95 (642)
++.|.+.+++.++++ +..+|+|||+||+||++ ..|.|.+..+ ...|+|.|||+||+
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a------------------~~I~I~i~~~~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA------------------TNIDLKLKDYGVDLIEVSDNGCGVE 76 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCcEEEEEEECCCCcC
Confidence 677888888888886 58999999999999972 3567766543 35899999999999
Q ss_pred HHHHHHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEe
Q psy2391 96 RNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIET 175 (642)
Q Consensus 96 ~~el~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~ 175 (642)
++++...+.++++|....+ ++ .......|.+|+|++|+++++ +++|+|++.+ ...++.|..+++|.+....
T Consensus 77 ~~~l~~~f~~~~tsK~~~~-----~d-l~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~--~~~~~~~~~~~~G~~~~~~ 147 (365)
T 1h7s_A 77 EENFEGLTLKHHTSKIQEF-----AD-LTQVETFGFRGEALSSLCALS-DVTISTCHAS--AKVGTRLMFDHNGKIIQKT 147 (365)
T ss_dssp GGGSGGGGC---------------CC-TTCSEEESSSSSHHHHHHHHS-EEEEEEECTT--CSSCEEEEECTTSCEEEEE
T ss_pred HHHHHHHhhhccccccccc-----cc-hhcccccCCCCchhhhhhhhc-cEEEEEccCC--CcceEEEEEcCCCceEeec
Confidence 9999999999988732210 00 012345799999999999998 9999999987 6678999987556544322
Q ss_pred cCCCCCccEEEEE-e------------cCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEe
Q psy2391 176 INKTNRGTDITLY-L------------RSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVI 241 (642)
Q Consensus 176 ~~~~~~GT~I~l~-l------------k~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~ 241 (642)
....++||+|++. | +....+| .+|.+++++|+- ..| |.+.... ++..
T Consensus 148 ~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~---~~i~~~v~~~al--~~p~v~f~l~~---~~~~----------- 208 (365)
T 1h7s_A 148 PYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEY---AKMVQVLHAYCI--ISAGIRVSCTN---QLGQ----------- 208 (365)
T ss_dssp ECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHH---HHHHHHHHHHHH--HCTTCEEEEEE---ECTT-----------
T ss_pred ccCCCCCcEEEEeecccccchhhhhhccchHHHH---HHHHHhhhhhhh--cCCceEEEEEe---cCCC-----------
Confidence 2345899999997 3 2222333 789999999994 344 5553321 1100
Q ss_pred ecCccccccCCCCCCHHHHHHHHhhhccCCCCCceeeecc----------------c-ccceEEEEEEEeeCCCCCCccc
Q psy2391 242 NQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNH----------------V-EGRNEYIQLLYIPSRAPYDLWD 304 (642)
Q Consensus 242 n~~~~iw~~~~~~~~~e~~~~fy~~~~~~~~~~l~~~~~~----------------~-eg~~~~~gll~iP~~~p~~~~~ 304 (642)
+..+.+|..++..-..+.....|+.-. ...|..+... . .+.+.++|++..|.... .
T Consensus 209 ~~~~~~~~~~~~~~~~~~i~~i~G~~~---~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~----~ 281 (365)
T 1h7s_A 209 GKRQPVVCTGGSPSIKENIGSVFGQKQ---LQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGV----G 281 (365)
T ss_dssp SCEEEEEECCCCSSHHHHHHHHHCHHH---HHTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTT----S
T ss_pred CcEEEEEEcCCCchHHHHHHHhcChHh---HhceEEEeccCCcccccccccccccccccccEEEEEEEeCccccc----c
Confidence 011455655554444556666665421 1223333211 1 13489999888887420 1
Q ss_pred cccCCccEEEEcceeeecCC---------Cch----hhhhhhceeeeecCCCCCCccc---hhhhccC--hhHHHHHHHH
Q psy2391 305 RNKRNGIKLYVKRVFIMDDA---------EQL----LPTYLRFVKGVIDSNNLPLNVS---REILQES--RDVKVIREGS 366 (642)
Q Consensus 305 ~~~~~~~~lyv~~v~i~d~~---------~~l----lP~~l~Fv~Gvvds~dl~lNvS---RE~lq~~--~~l~~i~~~l 366 (642)
+.++..+.+|||+|+|.+.. ..+ .|.++.|+. +|+..+|+||. ||..-.+ .++..|++.+
T Consensus 282 r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~--~~p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~ 359 (365)
T 1h7s_A 282 RSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRHQYPFVVLNIS--VDSECVDINVTPDKRQILLQEEKLLLAVLKTSL 359 (365)
T ss_dssp BSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTTCBCCEEEEEE--CCGGGEEEC------CEEETTHHHHHHHHHHHH
T ss_pred cCCCcceEEEECCeEecCHHHHHHHHHHHHhhCccCCcEEEEEEE--eChHHcceEECCCcCEEEEcCHHHHHHHHHHHH
Confidence 44678899999999998863 222 377888888 99999999994 5544333 2445554444
Q ss_pred H
Q psy2391 367 T 367 (642)
Q Consensus 367 ~ 367 (642)
.
T Consensus 360 ~ 360 (365)
T 1h7s_A 360 I 360 (365)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.1e-25 Score=234.34 Aligned_cols=280 Identities=17% Similarity=0.191 Sum_probs=190.6
Q ss_pred cCCCchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhccc
Q psy2391 33 LYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAKSGT 111 (642)
Q Consensus 33 LYs~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~Sg~ 111 (642)
...++..+|+|||+||+||++ ..|.|.+..++ ..|+|.|||+||+++++...+..+++|..
T Consensus 22 vi~~~~~vv~eLv~NaiDA~a------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~ 83 (367)
T 3h4l_A 22 VITDLTTAVKELVDNSIDANA------------------NQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKI 83 (367)
T ss_dssp HCCSHHHHHHHHHHHHHHTTC------------------SEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---
T ss_pred cccCHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCcC
Confidence 445688999999999999972 35777664443 58999999999999999977666666632
Q ss_pred hhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEE-EecCCCCCccEEEE---
Q psy2391 112 QEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTI-ETINKTNRGTDITL--- 187 (642)
Q Consensus 112 ~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v-~~~~~~~~GT~I~l--- 187 (642)
..+ . + .......|.+|+|++|+++++ +++|+||+.+ ..++.|..+++|.+.. .++ ..++||+|++
T Consensus 84 ~~~----~-D-l~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~---~~~~~~~~~~~G~~~~~~~~-~~~~GTtV~v~~L 152 (367)
T 3h4l_A 84 AKF----Q-D-VAKVQTLGFRGEALSSLCGIA-KLSVITTTSP---PKADKLEYDMVGHITSKTTT-SRNKGTTVLVSQL 152 (367)
T ss_dssp ------------CCCCEEEETTHHHHHHHHSS-EEEEEEESST---TCEEEEEECTTCCEEEEEEE-CCSSEEEEEEEST
T ss_pred Cch----h-h-hhhhhccCccchHHHHhhccC-EEEEEEEECC---CCEEEEEEcCCCcEEeeccc-cCCCCeEEEEchh
Confidence 211 0 0 112345677899999999998 7999999864 5789999975555433 343 4589999999
Q ss_pred ----------EecCchhhccCHHHHHHHHHHhhccCCCC-eEeeeccccccccccccccCceEEeecCccccccCCCCCC
Q psy2391 188 ----------YLRSKEEEYLSSWKLKSIIRKYSDHISFP-IKMYKETWDEEKKETVISNNEFEVINQASALWARGKSEIT 256 (642)
Q Consensus 188 ----------~lk~~~~e~~~~~~i~~~i~~ys~~l~~p-I~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~~~~~ 256 (642)
+++....|| .+|.+++++|+ +..| |.+.......+| +.+.+|..++..-.
T Consensus 153 F~n~P~R~k~flk~~~~e~---~~i~~~l~~~A--l~~p~v~~~l~~~~~~~--------------~~~~~~~t~~~~~~ 213 (367)
T 3h4l_A 153 FHNLPVRQKEFSKTFKRQF---TKCLTVIQGYA--IINAAIKFSVWNITPKG--------------KKNLILSTMRNSSM 213 (367)
T ss_dssp TTTCHHHHHHHHTTHHHHH---HHHHHHHHHHH--HHCTTCEEEEEEECTTS--------------CEEEEEECCSSCCH
T ss_pred hccCchhhhhhccchHHHH---HHHHHHHHHHH--hhCCCeEEEEEEcCCCC--------------cceEEEECCCCCCH
Confidence 567666676 79999999999 4455 666432100001 12344554444444
Q ss_pred HHHHHHHHhhhccCCCCCceeeecc----------------------cccceEEEEEEEeeCCCCCCccccccCCccEEE
Q psy2391 257 DEQYIEFYKHISHDFEKPLIYTHNH----------------------VEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLY 314 (642)
Q Consensus 257 ~e~~~~fy~~~~~~~~~~l~~~~~~----------------------~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~ly 314 (642)
.+.....|+. .+...|..+... ..+.+.++|++..|... ..+.++..+.+|
T Consensus 214 ~~~i~~i~G~---~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~----~~r~~~~~q~~f 286 (367)
T 3h4l_A 214 RKNISSVFGA---GGMRGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFG----CGRNSKDRQFIY 286 (367)
T ss_dssp HHHHHHHHCT---TTTTTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTT----CSBSSSSSEEEE
T ss_pred HHHHHHHhCH---HHHhccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCccc----ccCCCCCcEEEE
Confidence 5667777765 444556666551 22358999988877632 135567899999
Q ss_pred EcceeeecCC-------------CchhhhhhhceeeeecCCCCCCccc---hhhhccC--hhHHHHHHHHHHH
Q psy2391 315 VKRVFIMDDA-------------EQLLPTYLRFVKGVIDSNNLPLNVS---REILQES--RDVKVIREGSTKR 369 (642)
Q Consensus 315 v~~v~i~d~~-------------~~llP~~l~Fv~Gvvds~dl~lNvS---RE~lq~~--~~l~~i~~~l~~~ 369 (642)
||+|+|.+.. .+-.|.++.||. +|++.+|+||. ||..-.+ .++..|++.+.+.
T Consensus 287 VNgR~v~~~~l~~ai~~~y~~~~~~~~P~~~L~l~--~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~ 357 (367)
T 3h4l_A 287 VNKRPVEYSTLLKCCNEVYKTFNNVQFPAVFLNLE--LPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDY 357 (367)
T ss_dssp ETTEEECCHHHHHHHHHHHHTTCSSCBCCEEEEEE--CCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHH
T ss_pred ECCCEecCHHHHHHHHHHHHhcCCCCCcEEEEEEE--cChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHH
Confidence 9999998763 122488999999 99999999999 7765444 3556655554443
No 28
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.46 E-value=1.9e-12 Score=139.70 Aligned_cols=228 Identities=14% Similarity=0.178 Sum_probs=141.5
Q ss_pred HhcCC---CchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------H
Q psy2391 31 HSLYS---NKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND--------I 99 (642)
Q Consensus 31 ~~LYs---~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e--------l 99 (642)
-.+|- ++...|+|||.||+||... .....|.|.++.++ .|+|+|||.||+.++ +
T Consensus 23 PgmYiGs~~~~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~ 87 (390)
T 1s16_A 23 PGMYTDTTRPNHLGQEVIDNSVDEALA--------------GHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAV 87 (390)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CceeecCCcHHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecCC-EEEEEECCCCcCcccccccCcchh
Confidence 45663 2378999999999999631 12458888887654 899999999999988 6
Q ss_pred HHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc-eEEEecC-
Q psy2391 100 ITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN-FTIETIN- 177 (642)
Q Consensus 100 ~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~-~~v~~~~- 177 (642)
...|.++-++|+ +.++ .-.-..|..|+|+.++-+++++++|+|++.+ .+|..+..++.. -.+++..
T Consensus 88 e~v~~~lhagsK------f~~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g----~~~~~~~~~G~~~~~~~~~g~ 155 (390)
T 1s16_A 88 ELILCRLHAGGK------FSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDG----QVYNIAFENGEKVQDLQVVGT 155 (390)
T ss_dssp HHHHHCTTEESC------SSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETT----EEEEEEEETTEEEEEEEEEEE
T ss_pred hheeeeecccCC------cCCC--cccccCCccccchHHHHHhhcccEEEEEECC----cEEEEEEeCCcccccceeccc
Confidence 666766333332 2111 1123568889999999999999999999753 456555544322 1133222
Q ss_pred CC--CCccEEEEEecCchhhc----cCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecC---cccc
Q psy2391 178 KT--NRGTDITLYLRSKEEEY----LSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQA---SALW 248 (642)
Q Consensus 178 ~~--~~GT~I~l~lk~~~~e~----~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~---~~iw 248 (642)
.. .+||+|++.. +..-| .+..+|.+.++.++- +..-|.+.. .++. +..|
T Consensus 156 ~~~~~~GT~V~f~P--d~~~F~~~~~e~~~l~~rl~~lA~-lnpgv~i~l-------------------~d~~~~~~~~f 213 (390)
T 1s16_A 156 CGKRNTGTSVHFWP--DETFFDSPRFSVSRLTHVLKAKAV-LCPGVEITF-------------------KDEINNTEQRW 213 (390)
T ss_dssp CCTTCCEEEEEEEE--CGGGSSCCSCCHHHHHHHHHHHHH-HSTTCEEEE-------------------EETTTTEEEEE
T ss_pred ccCCCCceEEEEEE--CccccCcccccHHHHHHHHHHHHh-cCCCcEEEE-------------------EeCCCceeEEE
Confidence 22 6899999872 22222 456899999999983 322355532 1111 2456
Q ss_pred ccCCCCCCHHHHHHHHhhhccCCCCC----ceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecC
Q psy2391 249 ARGKSEITDEQYIEFYKHISHDFEKP----LIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDD 323 (642)
Q Consensus 249 ~~~~~~~~~e~~~~fy~~~~~~~~~~----l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~ 323 (642)
..+.. -.+|..++ .... ++ .++++...++ +.+.+.+--|.. .....+..|||++++.+.
T Consensus 214 ~~~gG---l~~~v~~l---~~~~-~~~~~~~i~~~~~~~~-~~ve~a~~~~~~--------~~~~~~~sFvN~i~t~~G 276 (390)
T 1s16_A 214 CYQDG---LNDYLAEA---VNGL-PTLPEKPFIGNFAGDT-EAVDWALLWLPE--------GGELLTESYVNLIPTMQG 276 (390)
T ss_dssp CCSSC---HHHHHHHH---HTTS-CCEEEEEEEEEEECSS-EEEEEEEEECTT--------CCCCCEEEEETTEECTTC
T ss_pred EcCCc---HHHHHHHH---hCCC-cccCCCcEEEEEeeCC-EEEEEEEEeccC--------CCCceEEEEECCEecCCC
Confidence 66553 23444433 2221 22 2333344344 777776666532 235678999999998775
No 29
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.41 E-value=6.1e-12 Score=134.66 Aligned_cols=216 Identities=8% Similarity=0.074 Sum_probs=130.2
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
+...++|||.||+||... ....+|.|.++.++ .|+|+|||.||+. |+.- ..+|.|
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~--~lhags------- 85 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV--RVATGA------- 85 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH--HHHTTT-------
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee--eeecCC-------
Confidence 467899999999999631 22468899887665 8999999999999 5553 455555
Q ss_pred hhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc----eEEEe---cC-CCCCccEEEEE
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN----FTIET---IN-KTNRGTDITLY 188 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~----~~v~~---~~-~~~~GT~I~l~ 188 (642)
|+.+. ...+..+.-| |+-|+-+++++++|+|++.+ .+|..+..++.. -.+.+ .. ..++||+|++.
T Consensus 86 Kf~~~--~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g----~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~ 158 (369)
T 3cwv_A 86 GFLGR--PPGDGWGWDS-MLVVSLALSSRYQVDIWADG----RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV 158 (369)
T ss_dssp TGGGS--SCCCSTTTTS-SHHHHHHTEEEEEEEEEETT----EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE
T ss_pred CcCCC--cccccccccC-HHHHHHHhhceEEEEEEECC----CEEEEEEeCCcccccccccCCceEecccCCCCCEEEEE
Confidence 22210 0001222225 87777888899999999754 356655554311 00222 21 23689999987
Q ss_pred ecCchhhc----cCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecC---ccccccCCCCCCHHHHH
Q psy2391 189 LRSKEEEY----LSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQA---SALWARGKSEITDEQYI 261 (642)
Q Consensus 189 lk~~~~e~----~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~---~~iw~~~~~~~~~e~~~ 261 (642)
. +...| .+..+|.+.++++|- +..-|.+.. .++. +..|..+.. -.+|.
T Consensus 159 P--d~~~F~~~~~e~~~l~~rl~~lA~-lnpgv~i~l-------------------~d~~~~~~~~f~~~gG---l~~~v 213 (369)
T 3cwv_A 159 P--DATIFEVLAFDRARLSRRCNELAA-LAPGLRVSF-------------------ADLQRGERTLWHLPGG---VAQWA 213 (369)
T ss_dssp E--CTTTCSCCCCCHHHHHHHHHHHHH-HSTTCEEEE-------------------EETTTTEEEEEECTTH---HHHHH
T ss_pred E--CHHHhCCccccHHHHHHHHHHHcC-cCCCcEEEE-------------------EeCCCCeeEEEEeCch---HHHHH
Confidence 2 22222 456899999999992 333365532 2222 345665552 23344
Q ss_pred HHHhhhccC---CCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeec
Q psy2391 262 EFYKHISHD---FEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMD 322 (642)
Q Consensus 262 ~fy~~~~~~---~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d 322 (642)
.+ +... ...+++++....++ +.+.+.+-.|.. .+..+..|||++++.+
T Consensus 214 ~~---l~~~~~~~~~~~i~~~~~~~~-i~ve~a~~~~~~---------~~~~~~sFVN~i~t~~ 264 (369)
T 3cwv_A 214 HV---LTEARPQLHPEPVVFDFTWDG-LRVQCALQWCED---------EDSTLLSFANAVRTVR 264 (369)
T ss_dssp HH---HHTTSCBSSSSCEEEEEEETT-EEEEEEEEEBSS---------SCCEEEEEETTEECTT
T ss_pred HH---HhcCCcccCCCcEEEEEecCC-EEEEEEEEecCC---------CCeeEEEEECCEEeCC
Confidence 43 3222 11233444444444 777776655531 3567899999999987
No 30
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.40 E-value=2.4e-12 Score=138.97 Aligned_cols=224 Identities=14% Similarity=0.180 Sum_probs=134.1
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHHHHHhc
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT--------NLGTIAKS 109 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~--------~l~~ia~S 109 (642)
...|+|||.||+|+..+ .....|.|.++.+ ..|+|.|||.||+.+++.. .|.+. ..
T Consensus 34 ~~~v~Elv~N~iD~a~~--------------~~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~-~~ 97 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--------------GYATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTL-HS 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSS-CE
T ss_pred HHHHHHHHHHHHHHhhh--------------CCCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeee-ee
Confidence 56899999999999732 1245788888765 4899999999999998753 33322 22
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc-eEEEecC-C--CCCccEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN-FTIETIN-K--TNRGTDI 185 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~-~~v~~~~-~--~~~GT~I 185 (642)
|.+ | ..+ ......|..|+|+.++.+++++++|+|++.+ .++.+....+.. ..+.+.. . ..+||+|
T Consensus 98 ~~k-f----~~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g----~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V 166 (390)
T 1kij_A 98 GGK-F----EQG--AYKVSGGLHGVGASVVNALSEWTVVEVFREG----KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRV 166 (390)
T ss_dssp ESG-G----GGS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETT----EEEEEEEETTEEEEEEEEEEECGGGCCEEEE
T ss_pred ccc-c----cCc--cccccCCCCCcceeeecccccceEEEEecCC----cEEEEEEcCCcccccceeeccccCCCCCcEE
Confidence 222 2 111 1122458899999999999999999999753 455555444322 2343332 1 4799999
Q ss_pred EEEecCchhhc----cCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccCCCCCCHHHHH
Q psy2391 186 TLYLRSKEEEY----LSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARGKSEITDEQYI 261 (642)
Q Consensus 186 ~l~lk~~~~e~----~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~~ 261 (642)
++. ++...| .+..+|.+.++.++ ++..-+.+... ++.. ..+..|..+.. -.+|.
T Consensus 167 ~f~--Pd~~~F~~~~~~~~~l~~rl~~~A-~lnpgv~i~l~-----d~~~-----------~~~~~f~~~~G---l~~~v 224 (390)
T 1kij_A 167 TFK--PDPEIFGNLRFDPSKIRARLREVA-YLVAGLKLVFQ-----DRQH-----------GKEEVFLDKGG---VASFA 224 (390)
T ss_dssp EEE--ECHHHHTTCCCCHHHHHHHHHHHH-HHTTTCEEEEE-----EGGG-----------TEEEEECCTTH---HHHHH
T ss_pred EEE--EChHHhCCccccHHHHHHHHHHhc-CcCCCcEEEEE-----eCCC-----------cceEEEEcCCc---HHHHH
Confidence 996 222222 35688999999998 23333555321 1100 01234655552 23344
Q ss_pred HHHhhhccC---CCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecC
Q psy2391 262 EFYKHISHD---FEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDD 323 (642)
Q Consensus 262 ~fy~~~~~~---~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~ 323 (642)
.+ +... ...+..++....+| +.+.+++-.. ......+..|||++++.+.
T Consensus 225 ~~---l~~~~~~~~~~~i~~~~~~~~-i~ve~a~~~~---------~~~~~~~~sFvN~i~t~~G 276 (390)
T 1kij_A 225 KA---LAEGEDLLYEKPFLIRGTHGE-VEVEVGFLHT---------QGYNAEILTYANMIPTRDG 276 (390)
T ss_dssp HH---HTTTSCBSCSSCEEEEEEETT-EEEEEEEEEB---------SSSCCEEEEEETTEECTTC
T ss_pred HH---HhCCCCcCCCCcEEEEeecCC-eEEEEEEEec---------CCCCceEEEEEcCeeeCCC
Confidence 43 3322 11223333333344 6666655432 2235678999999999875
No 31
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.36 E-value=2.4e-11 Score=130.98 Aligned_cols=226 Identities=14% Similarity=0.157 Sum_probs=135.6
Q ss_pred CchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHHH
Q psy2391 36 NKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND--------IITNLGTIA 107 (642)
Q Consensus 36 ~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e--------l~~~l~~ia 107 (642)
++...++|||.||+||... .....|.|.++.++ .|+|+|||.||+.++ +...|.+.-
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTTS-CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCCC-EEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4578899999999999631 12458888887764 899999999999988 444565333
Q ss_pred hccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc---ceEE-EecCCCCCcc
Q psy2391 108 KSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG---NFTI-ETINKTNRGT 183 (642)
Q Consensus 108 ~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~---~~~v-~~~~~~~~GT 183 (642)
++|+ +.++ .-.-.-|..|+|+-++-+++.+++|+|++.+ .+|..+..++. ...+ .+ ...+||
T Consensus 99 agsK------f~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g----~~~~~~~~~G~~~~~l~~~~~--~~~~GT 164 (391)
T 1ei1_A 99 AGGK------FDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREG----KIHRQIYEHGVPQAPLAVTGE--TEKTGT 164 (391)
T ss_dssp EESC------SSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETT----EEEEEEEETTEESSCCEEEEE--CSCCEE
T ss_pred ccCC------cCCC--cccccCCccccchHHHHHhcCeEEEEEEeCC----cEEEEEEcCCcccccceeccC--cCCCcc
Confidence 3333 2111 1123567889999999999999999998753 45555544331 1222 22 247999
Q ss_pred EEEEEecCch--h-hccCHHHHHHHHHHhhccCCCCeEeeeccccccccccccccCceEEeecCccccccCCCCCCHHHH
Q psy2391 184 DITLYLRSKE--E-EYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARGKSEITDEQY 260 (642)
Q Consensus 184 ~I~l~lk~~~--~-e~~~~~~i~~~i~~ys~~l~~pI~~~~~~~~~~g~~~~~~~~~~~~~n~~~~iw~~~~~~~~~e~~ 260 (642)
+|++...... . .-++..+|.+.++.++- +..-|.+... ++. ...+..|..+.. -.+|
T Consensus 165 ~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~-lnpgv~i~l~-----d~~-----------~~~~~~f~~~gG---l~~~ 224 (391)
T 1ei1_A 165 MVRFWPSLETFTNVTEFEYEILAKRLRELSF-LDSGVSIRLR-----DKR-----------DGKEDHFHYEGG---IKAF 224 (391)
T ss_dssp EEEEEECTTTCCSCCSCCHHHHHHHHHHHHH-HSTTCEEEEE-----ETT-----------TCCEEEECCCSH---HHHH
T ss_pred EEEEEEChhhhCCccccCHHHHHHHHHHhcc-cCCCcEEEEE-----cCC-----------CcceEEEEcCch---HHHH
Confidence 9999622110 1 12356889999999983 3323555321 100 001234655552 1334
Q ss_pred HHHHhhhccC---CCCCceeeecccccceEEEEEEEeeCCCCCCccccccCCccEEEEcceeeecC
Q psy2391 261 IEFYKHISHD---FEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYVKRVFIMDD 323 (642)
Q Consensus 261 ~~fy~~~~~~---~~~~l~~~~~~~eg~~~~~gll~iP~~~p~~~~~~~~~~~~~lyv~~v~i~d~ 323 (642)
.. .+... ...+..++....++ +.+.+.+-.|.. ....+..|||++.+.+.
T Consensus 225 v~---~l~~~~~~~~~~~i~~~~~~~~-i~veva~~~~~~---------~~e~~~sFvN~i~t~~G 277 (391)
T 1ei1_A 225 VE---YLNKNKTPIHPNIFYFSTEKDG-IGVEVALQWNDG---------FQENIYCFTNNIPQRDG 277 (391)
T ss_dssp HH---HHHHTSCBSSSCCEEEEEEETT-EEEEEEEEEBSS---------CCEEEEEEETTEECTTC
T ss_pred HH---HHcCCCcccccccEEEEEecCC-EEEEEEEEccCC---------CCeeEEEEEcceecCCC
Confidence 44 33222 11223344334344 677766655532 34678999999998765
No 32
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.33 E-value=3.8e-12 Score=125.29 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=91.3
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HH-HHHHHH
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI--------IT-NLGTIA 107 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el--------~~-~l~~ia 107 (642)
+..+++|||.||+||... .....|.|.++.+ ..|+|.|||.||+.+++ .. +...+|
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ha 82 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 82 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeecc
Confidence 478999999999999631 1245788888754 48999999999999883 33 233445
Q ss_pred hccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc-eEEEecC-C--CCCcc
Q psy2391 108 KSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN-FTIETIN-K--TNRGT 183 (642)
Q Consensus 108 ~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~-~~v~~~~-~--~~~GT 183 (642)
+| |+.++ ...-..|..|+|+.|+-+++++++|+|++.+ ..+.....++.. ..+.++. . ...||
T Consensus 83 ts-------K~~~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g----~~~~~~~~~G~~~~~~~~~g~~~~~~~GT 149 (201)
T 3fv5_A 83 GG-------KFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDG----QVYNIAFENGEKVQDLQVVGTCGKRNTGT 149 (201)
T ss_dssp ----------------------------CHHHHHTEEEEEEEEEETT----EEEEEEEETTEEEEEEEEEEECCTTCCEE
T ss_pred cc-------CcCCC--cccccCcccceecchhhcccceEEEEEEecC----ceEEEEEeCCEEcccceecccCCCCCCCe
Confidence 44 22211 1123578889999999999999999999754 345544444321 1232221 2 47999
Q ss_pred EEEEEecCch--hhccCHHHHHHHHHHhhccCCCC-eEeee
Q psy2391 184 DITLYLRSKE--EEYLSSWKLKSIIRKYSDHISFP-IKMYK 221 (642)
Q Consensus 184 ~I~l~lk~~~--~e~~~~~~i~~~i~~ys~~l~~p-I~~~~ 221 (642)
+|++...... ..-.+..+|.+.+++|+ +..| |.+..
T Consensus 150 ~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA--~l~pgv~~~l 188 (201)
T 3fv5_A 150 SVHFWPDETFFDSPRFSVSRLTHVLKAKA--VLCPGVEITF 188 (201)
T ss_dssp EEEEEECGGGSSCCCCCHHHHHHHHHHHH--HHSTTCEEEE
T ss_pred EEEEEECHHHcCCCccCHHHHHHHHHHHH--HhCCCCEEEE
Confidence 9999632110 11245689999999999 3344 65543
No 33
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.14 E-value=8.1e-11 Score=129.95 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=98.6
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcC-----CCCEEEEEeCCCCCCHHHHHHHHHHHHhccch
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDK-----DNRTINISDNGIGMNRNDIITNLGTIAKSGTQ 112 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~-----~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~ 112 (642)
..+|+|||+||+||+..- ...+.|.|.+.. +...|+|+|||+||+.+++...+..+.++++.
T Consensus 34 ~qvl~nLv~NAida~~~g-------------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~ 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVH-------------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGG-------------TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC
T ss_pred HHHHHHHHHHHHHHhhcC-------------CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc
Confidence 467999999999998421 111245555433 22379999999999999999877655332211
Q ss_pred hhHhhhhcCccccccccccccchhhhhhcccCE-----EEEEeecCCCCCCceEEEEEe------CCcceEEEecC--CC
Q psy2391 113 EFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKK-----IIVKSRHVNSPITEGVLWESE------GSGNFTIETIN--KT 179 (642)
Q Consensus 113 ~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~-----v~V~Sr~~~~~~~~~~~w~~~------~~~~~~v~~~~--~~ 179 (642)
......|.+|+|++++..+++. +.|.|+..+ +..++.|... ++..+...+.+ ..
T Consensus 101 -----------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~--g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~ 167 (471)
T 1mu5_A 101 -----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN--SKRIYTFKLKIDINKNEPIIVERGSVENTRG 167 (471)
T ss_dssp -----------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTT--CSEEEEEEEEECTTTCCEEEEEEEEEECCTT
T ss_pred -----------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCC--CceEEEEEEeccccccCCcccccccccCCCC
Confidence 1224558899999999998886 999998764 3336665521 22234444442 34
Q ss_pred CCccEEEEEecCchhhccCHHHHHHHHHHhh
Q psy2391 180 NRGTDITLYLRSKEEEYLSSWKLKSIIRKYS 210 (642)
Q Consensus 180 ~~GT~I~l~lk~~~~e~~~~~~i~~~i~~ys 210 (642)
.+||+|++.++.+..++. .+|.+++++++
T Consensus 168 ~~GT~V~v~l~~~~~e~~--~~I~~~l~~~a 196 (471)
T 1mu5_A 168 FHGTSVAISIPGDWPKAK--SRIYEYIKRTY 196 (471)
T ss_dssp CCEEEEEEEEECCHHHHH--HHHHHHHHHHH
T ss_pred CCCEEEEEEEcCCcchHH--HHHHHHHHHHH
Confidence 799999999887654432 68999999998
No 34
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.07 E-value=2.4e-10 Score=127.75 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=98.2
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDK---DNRTINISDNGIGMNRNDIITNLGTIAKSGTQEF 114 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~---~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f 114 (642)
..+|+|||+||+||+..- ...+.+.|.+..+. +...|+|.|||+||+.+++...|..+.++++.
T Consensus 33 ~qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC--
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc--
Confidence 467999999999998421 00113455554432 22379999999999999998777554222111
Q ss_pred HhhhhcCccccccccccccchhhhhhcccC-----EEEEEeecCCCCCCceEEEEE--e----CCcceEEEecC--CCCC
Q psy2391 115 FSKLSGDQKKDASLIGQFGVGFYSAFIVAK-----KIIVKSRHVNSPITEGVLWES--E----GSGNFTIETIN--KTNR 181 (642)
Q Consensus 115 ~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~-----~v~V~Sr~~~~~~~~~~~w~~--~----~~~~~~v~~~~--~~~~ 181 (642)
......|..|+|++++..+++ .+.|.|+..+ +..++.+.. . ++......+.. ...+
T Consensus 100 ---------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~--g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~ 168 (530)
T 2zbk_B 100 ---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN--SKRIYTFKLKIDINKNEPIIVERGSVENTRGFH 168 (530)
T ss_dssp ---------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTT--CSEEEEEEEEEETTTTEEEEEEEEEEECCSSCC
T ss_pred ---------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCC--CeEEEEEEEEecccccCCccccccccCCCCCCC
Confidence 122456899999999988887 6999998764 333555542 1 12223344432 2478
Q ss_pred ccEEEEEecCchhhccCHHHHHHHHHHhhc
Q psy2391 182 GTDITLYLRSKEEEYLSSWKLKSIIRKYSD 211 (642)
Q Consensus 182 GT~I~l~lk~~~~e~~~~~~i~~~i~~ys~ 211 (642)
||+|++.++.+..++ ..++.+++++|+-
T Consensus 169 GT~V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 169 GTSVAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred CcEEEEEeccchhhH--HHHHHHHHHHHHH
Confidence 999999998765544 2689999999983
No 35
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.92 E-value=4e-09 Score=113.84 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=100.1
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHHHhc
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND--------IITNLGTIAKS 109 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e--------l~~~l~~ia~S 109 (642)
...++|||.||+||.... .....|.|.++.++..|+|.|||.||+.++ +...|.+.-.+
T Consensus 54 ~~lv~EivdNsiDe~~~~-------------g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQRD-------------PKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhhc-------------CCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 468999999999997321 124578888887667999999999999987 55556533333
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc-eEEEecC--CCCCccEEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN-FTIETIN--KTNRGTDIT 186 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~-~~v~~~~--~~~~GT~I~ 186 (642)
|+ +.++ .-.-..|..|+|.-++=+++++++|+|+... +..+|.....++.. ....++. ...+||+|+
T Consensus 121 sK------f~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~--~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~ 190 (400)
T 1zxm_A 121 SN------YDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASRE--YKKMFKQTWMDNMGRAGEMELKPFNGEDYTCIT 190 (400)
T ss_dssp SC------CCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETT--TTEEEEEEEETTTTEECCCEEEECCSCCEEEEE
T ss_pred CC------CCCC--cccccCCccccceeeeEEeccceEEEEecCC--CCcEEEEEEccCccccCcceeccCCCCCccEEE
Confidence 33 1111 1122568889999999999999999998753 34556555544322 1111111 235899999
Q ss_pred EEecCc---hhhccCHHH---HHHHHHHhhccCCCCeEe
Q psy2391 187 LYLRSK---EEEYLSSWK---LKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 187 l~lk~~---~~e~~~~~~---i~~~i~~ys~~l~~pI~~ 219 (642)
+..... ..+| +... |.+.++.+| |+..-+.+
T Consensus 191 F~Pd~~iF~~~ef-~~~~~~~l~~rlrelA-~lnpgv~i 227 (400)
T 1zxm_A 191 FQPDLSKFKMQSL-DKDIVALMVRRAYDIA-GSTKDVKV 227 (400)
T ss_dssp EEECGGGGTCSSC-CHHHHHHHHHHHHHHH-HHSSSCEE
T ss_pred EEEChHHhCceee-cHHHHHHHHHHHHHHH-hhCCCcEE
Confidence 873322 1223 4455 668888877 23333555
No 36
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.91 E-value=7.9e-10 Score=125.30 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=95.4
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC---CEEEEEeCCCCCCHHHHHHHHHHHHhccchhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN---RTINISDNGIGMNRNDIITNLGTIAKSGTQEF 114 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~---~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f 114 (642)
..+|+|||+||+||.... .....|.|.+..++ ..|+|+|||.||+.+++...+..+.++++ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~~-------------g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atsk--f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEEA-------------GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSR--F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTTT-------------SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----C
T ss_pred HHHHHHHHHHHHHHHhhc-------------CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCc--c
Confidence 568999999999998421 11235666554433 37999999999999999886644422221 1
Q ss_pred HhhhhcCccccccccccccchhhhhhcccCE-----EEEEeecCCCCCCceEEEEE-----eCCcceE-EEecC-CCCCc
Q psy2391 115 FSKLSGDQKKDASLIGQFGVGFYSAFIVAKK-----IIVKSRHVNSPITEGVLWES-----EGSGNFT-IETIN-KTNRG 182 (642)
Q Consensus 115 ~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~-----v~V~Sr~~~~~~~~~~~w~~-----~~~~~~~-v~~~~-~~~~G 182 (642)
. ......|..|+|+.++..+++. ++|.|+..+ +..++.+.. .+.+... ..+.+ ...+|
T Consensus 104 ----~----~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~g--g~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~G 173 (621)
T 2q2e_B 104 ----H----ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSP--TAPAHYYELMINTSTNEPDILVDEVRDWFRPHG 173 (621)
T ss_dssp ----C----CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSS--SSCEEEEECCCCSSSCSCCCCCEEECCCSCSSC
T ss_pred ----c----cccccCCCceechhhhhHHHHHhCCCceeEEeeccC--CccceEEEEecchhcccccccccccccCCCCCC
Confidence 0 0112348899999999888777 599998765 446777765 2333221 12221 24799
Q ss_pred cEEEEEecCchhhccC--HHHHHHHHHHhhc
Q psy2391 183 TDITLYLRSKEEEYLS--SWKLKSIIRKYSD 211 (642)
Q Consensus 183 T~I~l~lk~~~~e~~~--~~~i~~~i~~ys~ 211 (642)
|+|++.++.+ |.. ..+|.+.+++++-
T Consensus 174 T~V~~~f~~~---~~~~~~~~I~~~L~~lAl 201 (621)
T 2q2e_B 174 TQIELEMRAA---YVKGRRQSIYEYLKATAI 201 (621)
T ss_dssp CCEEEECSCC---CCCCSSSSSHHHHHHHHH
T ss_pred CEEEEEecCc---cchHHHHHHHHHHHHHHh
Confidence 9999998744 333 2578889999883
No 37
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.88 E-value=3.6e-09 Score=105.31 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=94.9
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHHHHHh
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI--------ITNLGTIAK 108 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el--------~~~l~~ia~ 108 (642)
+...++|||.||+||... .....|.|.++.+ ..|+|+|||.||+.+.. ...|...-.
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lha 100 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeeccc
Confidence 368899999999999632 1245788888765 48999999999999863 223433323
Q ss_pred ccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc---ceEEEecCCCCCccEE
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG---NFTIETINKTNRGTDI 185 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~---~~~v~~~~~~~~GT~I 185 (642)
+|+ +.++ .-...-|..|+|.-++=+++++++|++++.+ ..|..+...+. ...+.+. ...+||+|
T Consensus 101 g~K------fd~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g----~~~~~~f~~G~~~~~l~~~g~-~~~~GT~V 167 (220)
T 4duh_A 101 GGK------FDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREG----KIHRQIYEHGVPQAPLAVTGE-TEKTGTMV 167 (220)
T ss_dssp SSC------CCTT--C--------CCCHHHHHHTEEEEEEEEEETT----EEEEEEEETTEESSSCEEEEE-CSCCEEEE
T ss_pred CCC------cCCC--ccccccCccceecchhcccccceEEEEEECC----EEEEEEecCCcCcCCceeccc-cCCCCcEE
Confidence 332 2111 1234668889999999999999999998764 34444433321 1122122 34799999
Q ss_pred EEEecCch---hhccCHHHHHHHHHHhhccCCCCeEee
Q psy2391 186 TLYLRSKE---EEYLSSWKLKSIIRKYSDHISFPIKMY 220 (642)
Q Consensus 186 ~l~lk~~~---~e~~~~~~i~~~i~~ys~~l~~pI~~~ 220 (642)
+......- ..-++...|.+.++.+| |+..-|.+.
T Consensus 168 ~F~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~ 204 (220)
T 4duh_A 168 RFWPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIR 204 (220)
T ss_dssp EEEECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEE
T ss_pred EEEECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEE
Confidence 98632221 11135688999999998 454445553
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.87 E-value=1.4e-08 Score=101.37 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=96.3
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH-------HHHHHHHHHhcc
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND-------IITNLGTIAKSG 110 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e-------l~~~l~~ia~Sg 110 (642)
...++|+|.||+|+... .....|.|.++.+ ..|+|.|||.||+.++ +...|...-++|
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 46789999999999631 1245788888765 4899999999999987 554454333333
Q ss_pred chhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCC-c---ce-EEEecCCCCCccEE
Q psy2391 111 TQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGS-G---NF-TIETINKTNRGTDI 185 (642)
Q Consensus 111 ~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~-~---~~-~v~~~~~~~~GT~I 185 (642)
+ | .. ..-...-|..|+|.-++=+++++++|++++.+ ..|..+...+ . .. .+.+......||+|
T Consensus 107 K--f----d~--~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g----~~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V 174 (226)
T 4emv_A 107 K--F----GQ--GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG----AVYKQRFENGGKPVTTLKKIGTALKSKTGTKV 174 (226)
T ss_dssp -------------------CGGGCCHHHHHHTEEEEEEEEEETT----EEEEEEEETTTEESSCSEEEEECCTTCCEEEE
T ss_pred c--c----Cc--cceEeccccccccchhhhhcccceEEEEEeCC----cEEEEEECCCCEEcCCceEecccCCCCCCeEE
Confidence 3 2 11 11234568889999999999999999999864 3444444433 1 11 23333225799999
Q ss_pred EEEecCc---hhhccCHHHHHHHHHHhhccCCCCeEe
Q psy2391 186 TLYLRSK---EEEYLSSWKLKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 186 ~l~lk~~---~~e~~~~~~i~~~i~~ys~~l~~pI~~ 219 (642)
+...... ..+ ++...|.+.++.+| |+..-+.+
T Consensus 175 ~F~PD~~iF~~~~-~~~~~l~~rlrelA-~ln~gv~i 209 (226)
T 4emv_A 175 TFMPDATIFSTTD-FKYNTISERLNESA-FLLKNVTL 209 (226)
T ss_dssp EEEECTTTCSCCC-CCHHHHHHHHHHHH-HHHCSCEE
T ss_pred EEEECHHHcCCCC-cCHHHHHHHHHHHh-hcCCCCEE
Confidence 9863322 122 46688999999988 44443544
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.58 E-value=1.9e-07 Score=100.70 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=93.4
Q ss_pred HhcCC---CchhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------
Q psy2391 31 HSLYS---NKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI-------- 99 (642)
Q Consensus 31 ~~LYs---~~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el-------- 99 (642)
-.+|- ++...++|+|.||+|+... .....|.|.++.+ +.|+|+|||.||+.+..
T Consensus 42 PgMYiGst~~~hlv~EivdNsiDea~a--------------g~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~ 106 (408)
T 3lnu_A 42 PGMYTDTARPNHLAQEVIDNSVDEALA--------------GHAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGV 106 (408)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CccEECCCCcchhhHHHHHHHHHHhhc--------------CCCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcch
Confidence 44665 3578999999999999531 1245788888765 48999999999998763
Q ss_pred HHHHHHHHhccchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc---ceE-EEe
Q psy2391 100 ITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG---NFT-IET 175 (642)
Q Consensus 100 ~~~l~~ia~Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~---~~~-v~~ 175 (642)
...|..+-.+|+ | .++ .-...-|..|+|.-++=+++++++|++++.| ..|..+...+. ... +.+
T Consensus 107 e~i~t~lhaggK--f----d~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdG----k~~~q~f~~G~~~~~l~~ig~ 174 (408)
T 3lnu_A 107 ELILTRLHAGGK--F----NNR--NYTFSGGLHGVGVSVVNALSTKVELFIKREG----SEHRMEFRDGNAASKLEVVGT 174 (408)
T ss_dssp HHHHHCC----------------------------CHHHHHHTEEEEEEEEEETT----EEEEEEEETTEECSCCEEEEE
T ss_pred heEEEecccCCC--c----CCC--ceeecCCccccccceehhccCeEEEEEEECC----EEEEEEECCCEECCCceEecc
Confidence 233433333333 2 111 1224557889999999999999999999764 34444433321 112 333
Q ss_pred cCCCCCccEEEEEecCch--hhccCHHHHHHHHHHhhccCCCCeEe
Q psy2391 176 INKTNRGTDITLYLRSKE--EEYLSSWKLKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 176 ~~~~~~GT~I~l~lk~~~--~e~~~~~~i~~~i~~ys~~l~~pI~~ 219 (642)
.+....||+|+......- ..-++...|.+.++.++ |+..-+.+
T Consensus 175 ~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA-~Ln~Gv~I 219 (408)
T 3lnu_A 175 VGKKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKA-VLCPGLTV 219 (408)
T ss_dssp CCTTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHH-HHSTTCEE
T ss_pred CcCCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHH-hhcCCCEE
Confidence 322479999998633221 11146688898999887 34333444
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.48 E-value=2.1e-07 Score=91.05 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=86.8
Q ss_pred chhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 37 KEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 37 ~~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
+...++|||.||+|+... .....|.|.++.+ ..|+|.|||.||+.+ .+++|+...
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~--- 86 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPA--- 86 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBH---
T ss_pred hHHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCcc---
Confidence 468899999999998521 1145788888765 499999999999986 345554321
Q ss_pred hhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCc---ceEEEecCCCCCccEEEEEecCch
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSG---NFTIETINKTNRGTDITLYLRSKE 193 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~---~~~v~~~~~~~~GT~I~l~lk~~~ 193 (642)
...+ |+ .-++=+++++++|+|++.| ..|..+...+. ...+.+. ....||+|++.. +.
T Consensus 87 ---------~e~i--~t--~SvVNALS~~l~v~v~r~g----~~~~~~f~~G~~~~~l~~i~~-~~~~GT~V~F~P--d~ 146 (198)
T 3ttz_A 87 ---------VEVI--LT--SSVVNALSQDLEVYVHRNE----TIYHQAYKKGVPQFDLKEVGT-TDKTGTVIRFKA--DG 146 (198)
T ss_dssp ---------HHHH--HH--TCHHHHTEEEEEEEEEETT----EEEEEEEETTEESSCCEEEEE-CSCCEEEEEEEE--CT
T ss_pred ---------cccc--ce--eEehhhhcCeEEEEEEECC----cEEEEEEeCCEECCCceeccC-CCCCCcEEEEEE--CH
Confidence 1111 22 3333456789999998864 34544444321 1111121 347999999862 22
Q ss_pred hhc-----cCHHHHHHHHHHhhccCCCCeEee
Q psy2391 194 EEY-----LSSWKLKSIIRKYSDHISFPIKMY 220 (642)
Q Consensus 194 ~e~-----~~~~~i~~~i~~ys~~l~~pI~~~ 220 (642)
.-| ++..+|.+.++.+| |+..-+.+.
T Consensus 147 ~iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~ 177 (198)
T 3ttz_A 147 EIFTETTVYNYETLQQRIRELA-FLNKGIQIT 177 (198)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHH-HHSTTCEEE
T ss_pred HHhccCCccCHHHHHHHHHHHh-hcCCCCEEE
Confidence 223 46688999999998 454446553
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.29 E-value=3.9e-06 Score=90.94 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=93.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHHHHHhcc
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDII--------TNLGTIAKSG 110 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~--------~~l~~ia~Sg 110 (642)
..+.|+|.||+|+.... .....|.|.++.++..|+|+|||.||+.+... -.|+++-++|
T Consensus 67 ~lv~EivdNaiDe~~~~-------------g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRD-------------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHhc-------------CCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 37999999999997321 12458888888776799999999999876522 2344443444
Q ss_pred chhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCC-----cceEEEecCCCCCccEE
Q psy2391 111 TQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGS-----GNFTIETINKTNRGTDI 185 (642)
Q Consensus 111 ~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~-----~~~~v~~~~~~~~GT~I 185 (642)
+-+ + ..-.-.-|..|+|.-.+=+++++++|+++... +...|..+...+ .. .+.+......||+|
T Consensus 134 Kfd------~--~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~r--dGk~y~q~f~~G~~~~~~p-~i~~~~~~~tGT~V 202 (418)
T 1pvg_A 134 NYD------D--DEKKVTGGRNGYGAKLCNIFSTEFILETADLN--VGQKYVQKWENNMSICHPP-KITSYKKGPSYTKV 202 (418)
T ss_dssp CCC------T--TSCCCCSCCSSCHHHHHHHTEEEEEEEEEETT--TTEEEEEEEETTTTEECCC-EEEECCSSCCEEEE
T ss_pred ccC------C--CceeccCCccceeeeeeeeccceEEEEEEECC--CCcEEEEEEEcCCCccCCC-eecccCCCCCceEE
Confidence 321 1 11223458889999888999999999998522 233343333222 11 24443224689999
Q ss_pred EEEecCch---hhccCHHH---HHHHHHHhhccCCCCeEe
Q psy2391 186 TLYLRSKE---EEYLSSWK---LKSIIRKYSDHISFPIKM 219 (642)
Q Consensus 186 ~l~lk~~~---~e~~~~~~---i~~~i~~ys~~l~~pI~~ 219 (642)
+.....+- .+ ++... |.+.++..| ||..-+.+
T Consensus 203 ~F~PD~~iF~~~~-f~~d~l~~l~~RlrelA-~Ln~Gl~I 240 (418)
T 1pvg_A 203 TFKPDLTRFGMKE-LDNDILGVMRRRVYDIN-GSVRDINV 240 (418)
T ss_dssp EEEECGGGGTCSS-CCHHHHHHHHHHHHHHH-HHSTTCEE
T ss_pred EEEEChHHcCCcc-cCHHHHHHHHHHHHHHH-hcCCCCEE
Confidence 98654321 22 24455 345555554 34333443
No 42
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.62 E-value=3.1e-05 Score=74.92 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=32.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.+.. ....|.|.....+ |+|.|||.||+.+++...+....++ +
T Consensus 120 ~il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~~~-~------- 173 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFYRP-P------- 173 (222)
T ss_dssp HHHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhccC-C-------
Confidence 467899999998852 1235777665443 9999999999999888655433221 0
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
...-+..|+|++-|-.+
T Consensus 174 -------~~~~~g~GlGL~i~~~i 190 (222)
T 3jz3_A 174 -------GQTATGSGLGLSIVQRI 190 (222)
T ss_dssp ---------------CTHHHHHHH
T ss_pred -------CCCCCcccccHHHHHHH
Confidence 11124679998876554
No 43
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00069 Score=81.93 Aligned_cols=147 Identities=19% Similarity=0.218 Sum_probs=85.6
Q ss_pred hHHHHHHhcHHH-HhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHHHHHhc
Q psy2391 39 IFLRELISNASD-ALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND--------IITNLGTIAKS 109 (642)
Q Consensus 39 i~lRELIqNA~D-A~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e--------l~~~l~~ia~S 109 (642)
..+.|.|.||+| |++ +..--.|.|+++.+++.|+|+|||-||+-+- +.-.|+++-++
T Consensus 62 hl~~EildNsiDea~a--------------g~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------------DPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------------CTTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhh--------------CCCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 457999999999 442 1112378888887778999999999998531 22223333344
Q ss_pred cchhhHhhhhcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcc----eEEEecCCCCCccEE
Q psy2391 110 GTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGN----FTIETINKTNRGTDI 185 (642)
Q Consensus 110 g~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~----~~v~~~~~~~~GT~I 185 (642)
|+-+ + ..-.-.-|.-|||.--+=+++.++.|++.... +...|..+...+.. -.+........||+|
T Consensus 128 gKFd------~--~~ykvSGGLHGVG~svVNALS~~~~vev~~~r--~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V 197 (1177)
T 4gfh_A 128 SNYD------D--DEKKVTGGRNGYGAKLCNIFSTEFILETADLN--VGQKYVQKWENNMSICHPPKITSYKKGPSYTKV 197 (1177)
T ss_dssp SCCC------C--SSCCCCSCCSSCHHHHHHHTEEEEEEEEEETT--TTEEEEEEEETTTTEECCCEEEECCSSCCCEEE
T ss_pred cCcC------C--CCCeEeccCCChhhhHHhhcCCceEEEEEEEc--CCEEEEEEEECCcccCCCCeeecCCCCCCceEE
Confidence 4321 1 11223458889998777777888877775332 23334333322221 233343344689999
Q ss_pred EEEecCc---hhhccCHHHHHHHHHHhh
Q psy2391 186 TLYLRSK---EEEYLSSWKLKSIIRKYS 210 (642)
Q Consensus 186 ~l~lk~~---~~e~~~~~~i~~~i~~ys 210 (642)
+...... ..+ ++...+....++.+
T Consensus 198 ~F~PD~~iF~~~~-~~~d~l~~~~r~~~ 224 (1177)
T 4gfh_A 198 TFKPDLTRFGMKE-LDNDILGVMRRRVY 224 (1177)
T ss_dssp EEEECHHHHTCSS-CCHHHHHHHHHHHH
T ss_pred EEEeCHHhcCCcE-eCHHHHHHHHHHHH
Confidence 8764322 122 35556666566554
No 44
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.50 E-value=7.6e-05 Score=68.08 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=43.3
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.+.. ...+.|.+..+.+.-.|+|.|||.||+.+++...+....++.
T Consensus 49 ~il~nLl~NA~~~~~---------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~-------- 105 (150)
T 1ysr_A 49 LAVDNAIANAVKHGG---------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGS-------- 105 (150)
T ss_dssp HHHHHHHHHHHHTTC---------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC-----------
T ss_pred HHHHHHHHHHHhcCC---------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCC--------
Confidence 568899999998852 113344444444445799999999999999886553221110
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
...-+..|+|++.+-.+
T Consensus 106 -------~~~~~g~GlGL~i~~~~ 122 (150)
T 1ysr_A 106 -------TASHSGSGLGLALVAQQ 122 (150)
T ss_dssp ---------------CCCHHHHHH
T ss_pred -------CCCCCCCCcCHHHHHHH
Confidence 11124679998877555
No 45
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.38 E-value=8.7e-05 Score=67.65 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=37.2
Q ss_pred cCCCc---hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHH
Q psy2391 33 LYSNK---EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITN 102 (642)
Q Consensus 33 LYs~~---~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~ 102 (642)
++.++ ..++.+||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...
T Consensus 38 ~~~d~~~l~~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~ 94 (152)
T 1id0_A 38 FVGEQNDFVEVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVI 94 (152)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGG
T ss_pred EeeCHHHHHHHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHH
Confidence 44454 3568899999999962 123444444444447999999999999887643
No 46
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.37 E-value=0.00025 Score=64.49 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=51.2
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~ 117 (642)
..++.|||.||+.+.... .....+.|.+..+.+.-.|+|.|||.||+ ++...+ .....
T Consensus 41 ~~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~----~~~~~----- 98 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEAR----QPLFT----- 98 (145)
T ss_dssp HHHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHT----CCC-------
T ss_pred HHHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhh----ccccc-----
Confidence 467999999999886310 00123344444444444799999999999 544332 11100
Q ss_pred hhcCccccccccccccchhhhhhcccCEEEEEeec
Q psy2391 118 LSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRH 152 (642)
Q Consensus 118 ~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~ 152 (642)
. .. ..+..|+|++-+-.+++++.+.+..
T Consensus 99 --~---~~--~~~~~GlGL~iv~~~~~~i~~~~~~ 126 (145)
T 1th8_A 99 --T---KP--ELERSGMGFTIMENFMDEVIVESEV 126 (145)
T ss_dssp ------------CCCSCHHHHHHHHSSEEEEEEET
T ss_pred --C---CC--CCCCCcchHHHHHHHHheEEEEeCC
Confidence 0 01 2245799998887777777666653
No 47
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.33 E-value=0.00014 Score=72.67 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=34.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITN 102 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~ 102 (642)
.++.+||.||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...
T Consensus 158 ~il~nLl~NA~~~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 207 (268)
T 4ew8_A 158 QTLDHLVENALRQTPP--------------GGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHI 207 (268)
T ss_dssp HHHHHHHHHHHHHSCT--------------TCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCC--------------CCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHH
Confidence 4689999999998621 1233444444433347999999999999887643
No 48
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.32 E-value=8.5e-05 Score=69.94 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=47.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR--TINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~--~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
.++.+||.||+.+.. ....+.|.+.....+. .|+|.|||.||+.+++...+....++ .
T Consensus 46 ~il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~-~----- 105 (177)
T 3sl2_A 46 QVLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRV-D----- 105 (177)
T ss_dssp HHHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCC-C-----
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccC-C-----
Confidence 468899999999862 1234466665444433 68999999999998876543221111 0
Q ss_pred hhhcCccccccccccccchhhhhhcc
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
.......+..|+|++.+-.+
T Consensus 106 ------~~~~~~~~g~GlGL~iv~~~ 125 (177)
T 3sl2_A 106 ------KARTRKLGGTGLGLAIAKEM 125 (177)
T ss_dssp ------------CCCCCCHHHHHHHH
T ss_pred ------CCCCCCCCCCCcCHHHHHHH
Confidence 01122335789998877554
No 49
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.31 E-value=0.00016 Score=64.48 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=31.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el 99 (642)
-+++||++||..+.. ...+.|.+..+.+.-.|+|.|||.||+++++
T Consensus 43 ~il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 43 MCLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHhcCC---------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 368999999988751 1234444444444447999999999987543
No 50
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.30 E-value=0.00024 Score=68.72 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el 99 (642)
+++||+.||+.+.. ...+.|.+..+.+.-.|+|.|||+||+++.+
T Consensus 134 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 68999999998852 1233444444444447999999999998765
No 51
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.30 E-value=0.00023 Score=76.43 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=60.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|||.||+++++...|...-+..... ..
T Consensus 234 ~il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~---~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHESS-------LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP---QP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC-------SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-------
T ss_pred HHHHHHHHHHHHHhhhccccC-------CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCC---Cc
Confidence 468899999999985321000 01123444444333334799999999999999886553222211000 00
Q ss_pred hcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEecC
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRS 191 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk~ 191 (642)
.......+.+|+|++-|-.+++ ..| |...+.. ..+.||+++|.|..
T Consensus 304 ----~~~~~~~~G~GLGL~i~~~i~~-------~~g--------------G~i~v~s--~~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 ----GTGGTPLAGFGYGLPISRLYAK-------YFQ--------------GDLQLFS--MEGFGTDAVIYLKA 349 (394)
T ss_dssp --------------CCHHHHHHHHHH-------HTT--------------CEEEEEE--ETTTEEEEEEEEES
T ss_pred ----ccCCCCCCCccCCHHHHHHHHH-------HhC--------------CEEEEEe--cCCCceEEEEEecC
Confidence 0012345678999987755532 222 2333433 23679999998754
No 52
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.29 E-value=0.00015 Score=71.18 Aligned_cols=73 Identities=19% Similarity=0.377 Sum_probs=46.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+...- +
T Consensus 126 ~il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~-~--------- 181 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYF-T--------- 181 (244)
T ss_dssp HHHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTC-C---------
T ss_pred HHHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccc-c---------
Confidence 457899999998862 1223445555554445799999999999988775432110 0
Q ss_pred hcCccccccccccccchhhhhhcc
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
....+..|+|++.|-.+
T Consensus 182 -------~~~~~g~GlGL~i~~~i 198 (244)
T 3d36_A 182 -------TKGVKGTGLGMMVVYRI 198 (244)
T ss_dssp -------SSGGGCCSCHHHHHHHH
T ss_pred -------CCCCCCcchhHHHHHHH
Confidence 00124579999877655
No 53
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.20 E-value=0.00013 Score=72.87 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=44.9
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEc--CCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFD--KDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d--~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
.++..||+||+.+... ......|.|... .+.-.|+|.|||+||+++++...|...-+...
T Consensus 141 ~il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----- 202 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDS----- 202 (258)
T ss_dssp HHHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC------
T ss_pred HHHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCC-----
Confidence 4678899999988631 111234555543 33346999999999999887754432211100
Q ss_pred hhhcCccccccccccccchhhhhhcc
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
......+..|+|++-|-.+
T Consensus 203 -------~~~~~~~G~GLGL~i~~~i 221 (258)
T 2c2a_A 203 -------SLTYEVPGTGLGLAITKEI 221 (258)
T ss_dssp ---------------CCCTHHHHHHH
T ss_pred -------CCCCCCCCcchHHHHHHHH
Confidence 1111224579998877555
No 54
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.19 E-value=0.0003 Score=75.52 Aligned_cols=117 Identities=24% Similarity=0.326 Sum_probs=65.2
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|+|.||+++++...|...-+..... ..
T Consensus 233 ~il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~---~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTP---VM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC-----
T ss_pred HHHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCC---Cc
Confidence 468899999999985421000 01123444444333334799999999999999887553222111000 00
Q ss_pred hcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEecC
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRS 191 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk~ 191 (642)
. .......+.+|+|++-|-.+++ ..| |...+.. ..+.||+++|.|..
T Consensus 303 ~---~~~~~~~~G~GLGL~i~~~i~~-------~~g--------------G~i~v~s--~~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 D---NSRNAPLAGFGYGLPISRLYAK-------YFQ--------------GDLNLYS--LSGYGTDAIIYLKA 349 (394)
T ss_dssp -------CCCSSCSSCHHHHHHHHHH-------HTT--------------CEEEEEE--ETTTEEEEEEEEES
T ss_pred C---cCCCCCCCCcccCHHHHHHHHH-------HhC--------------CEEEEEe--cCCccEEEEEEeCC
Confidence 0 0022345678999987755532 221 2333433 23679999998754
No 55
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.19 E-value=0.00023 Score=76.71 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=64.8
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|||.||+++++...|...-+..... ..
T Consensus 246 ~il~NLl~NAik~t~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~---~~ 315 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHANR-------GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRP---RV 315 (407)
T ss_dssp HHHHHHHHHHHHHHHHHSTTT-------CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCC---CS
T ss_pred HHHHHHHHHHHHHHhhccccC-------CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCC---Cc
Confidence 468899999999985321000 01123344444333334799999999999999876543221110000 00
Q ss_pred hcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEecC
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRS 191 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk~ 191 (642)
+ .......+.+|+|+.-|-.+++ ..| |.+.+.. ..+.||+++|.|..
T Consensus 316 --~-~~~~~~~~G~GLGL~Ivr~i~~-------~~g--------------G~i~v~s--~~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 316 --E-TSRAVPLAGFGYGLPISRLYAQ-------YFQ--------------GDLKLYS--LEGYGTDAVIYIKA 362 (407)
T ss_dssp --S-CCSCCCSSCTTCHHHHHHHHHH-------HTT--------------CEEEEEE--ETTTEEEEEEEEES
T ss_pred --c-ccCCCCCCCcCCCHHHHHHHHH-------HhC--------------CEEEEEE--cCCCceEEEEEECC
Confidence 0 0012345778999877655532 222 2333433 23679999998754
No 56
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.19 E-value=0.00012 Score=69.65 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=34.4
Q ss_pred HHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHH
Q psy2391 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--DKDNRTINISDNGIGMNRNDIIT 101 (642)
Q Consensus 41 lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d~~~~~i~I~DnGiGMt~~el~~ 101 (642)
+.+||.||+.+........... .......|.|.+ +.+.-.|+|.|||.||+.+++..
T Consensus 52 l~nLl~NAik~~~~~~~~~~~~----~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 110 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIAK----GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 110 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHH----TSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccc----cCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhh
Confidence 8999999999962110000000 001234555554 33334799999999999998743
No 57
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.09 E-value=0.00025 Score=76.82 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=62.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHhhh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKL 118 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~~~ 118 (642)
.++.+||.||+.|........ . ...+.+.|.+..+.+.-.|+|.|||.||+++++...|...-+.... ..+
T Consensus 256 ~vl~NLl~NAik~~~~~~~~~---~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~---~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYEDR---K---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPR---PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---S---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC----------
T ss_pred HHHHHHHHHHHHHHHhhcccc---C---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCC---CCc
Confidence 568899999999985421100 0 0012344444444333479999999999999988655322111000 000
Q ss_pred hcCccccccccccccchhhhhhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEecC
Q psy2391 119 SGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRS 191 (642)
Q Consensus 119 ~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk~ 191 (642)
. .......+.+|+|+.-|-.+++ ..| |...+.. ..+.||+++|.|..
T Consensus 327 ~---~~~~~~~~G~GLGL~I~k~iv~-------~~g--------------G~I~v~s--~~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 E---PTRAAPLAGFGYGLPISRLYAR-------YFQ--------------GDLKLYS--MEGVGTDAVIYLKA 373 (419)
T ss_dssp ---------CC--CTTHHHHHHHHHH-------HTT--------------CEEEEEE--ETTTEEEEEEEEES
T ss_pred c---ccCCCCcCCeecCHHHHHHHHH-------HhC--------------CEEEEEe--cCCCCEEEEEEecC
Confidence 0 0012335678999877655532 221 2333433 23679999998754
No 58
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.08 E-value=9.1e-05 Score=68.51 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=33.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT 101 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~ 101 (642)
.++.+||.||+.+. ...+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 50 ~il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 96 (161)
T 1bxd_A 50 RAVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH 96 (161)
T ss_dssp HHHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC
T ss_pred HHHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 46788999998764 123455555444444799999999999988764
No 59
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.07 E-value=0.0002 Score=76.68 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=37.5
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~l 103 (642)
.++.+||.||+.|....... .....+.+.|.+..+.+.-.|+|.|||.||+++++...|
T Consensus 241 ~il~NLl~NAik~~~~~~~~------~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF 299 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHLD------TPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVM 299 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTT------CTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTT
T ss_pred HHHHHHHHHHHHHhhccccC------CCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhc
Confidence 57899999999998532100 000112344444433333479999999999999887544
No 60
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.87 E-value=0.00042 Score=62.79 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=34.0
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITN 102 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~~ 102 (642)
.++.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...
T Consensus 50 ~il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~ 99 (152)
T 3a0y_A 50 QVLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKI 99 (152)
T ss_dssp HHHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGG
T ss_pred HHHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhH
Confidence 468899999999862 12223344433333347999999999999887643
No 61
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.68 E-value=0.0021 Score=68.71 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=34.8
Q ss_pred HHHHHhcHHHHhH----hhhhhhhcccccCCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHH
Q psy2391 41 LRELISNASDALD----KLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDII 100 (642)
Q Consensus 41 lRELIqNA~DA~~----~~~~~~~~~~~~~~~~~~~~I~I~~d~~~--~~i~I~DnGiGMt~~el~ 100 (642)
+.+||.||+|++- .|... .......|.|.....+ -.|+|.|||.||+++.+.
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~--------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAK--------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHT--------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhc--------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 8999999999972 11110 0122345666553333 369999999999999874
No 62
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.62 E-value=0.00083 Score=61.27 Aligned_cols=73 Identities=21% Similarity=0.222 Sum_probs=35.7
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCC----------CCEEEEEeCCCCCCHHHHHHHHHHHHh
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKD----------NRTINISDNGIGMNRNDIITNLGTIAK 108 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~i~I~DnGiGMt~~el~~~l~~ia~ 108 (642)
.++.+||.||+.+.... ...+.|.+..+.+ .-.|+|.|||.||+.+++...+....+
T Consensus 51 ~il~nLl~NAik~~~~~-------------~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~ 117 (160)
T 1r62_A 51 QVLLNIVRNALQALGPE-------------GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVS 117 (160)
T ss_dssp HHHHHHHHHHHHHHGGG-------------CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------
T ss_pred HHHHHHHHHHHHHhhcc-------------CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCcccc
Confidence 56889999999987320 1123344433322 236899999999999988765532221
Q ss_pred ccchhhHhhhhcCccccccccccccchhhhhhcc
Q psy2391 109 SGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIV 142 (642)
Q Consensus 109 Sg~~~f~~~~~~~~~~~~~~iG~fGiGf~S~f~v 142 (642)
+ . -+..|+|++.+-.+
T Consensus 118 ~--------------~----~~g~GlGL~i~~~~ 133 (160)
T 1r62_A 118 G--------------R----EGGTGLGLSIARNL 133 (160)
T ss_dssp ------------------------CHHHHHHHHH
T ss_pred C--------------C----CCCCccCHHHHHHH
Confidence 1 1 14579998777554
No 63
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.75 E-value=0.0048 Score=53.99 Aligned_cols=44 Identities=27% Similarity=0.518 Sum_probs=31.4
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND 98 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e 98 (642)
.++.||+.||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 42 ~il~nll~Na~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 42 AVLREAVSNAVRHAN---------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHTCTT---------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHhCC---------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 468899999987752 1234555555555 6799999999998754
No 64
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=95.39 E-value=0.0045 Score=54.53 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=31.0
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRND 98 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~e 98 (642)
.++.|||.||..+.. ...+.|.+..+.+ -.|+|.|||.||+.++
T Consensus 46 ~il~nll~NA~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 46 AVVREAVSNAVRHAA---------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHCCCCSS---------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHhCC---------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 458899999988751 2234555555555 6799999999998643
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=94.84 E-value=0.015 Score=59.76 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=34.6
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIIT 101 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiGMt~~el~~ 101 (642)
.++.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||+||+++++..
T Consensus 247 ~vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 247 QVLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 368899999999862 1223455554444444799999999999987664
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=94.52 E-value=0.045 Score=54.41 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=28.2
Q ss_pred HHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCCCEEEEEeCCCC--CCHHHH
Q psy2391 40 FLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIG--MNRNDI 99 (642)
Q Consensus 40 ~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnGiG--Mt~~el 99 (642)
++.=||.||.+|.. ....+.|.+..+.+.-.|+|.|+|.| ++++.+
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~ 197 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVL 197 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHH
Confidence 45568888888862 12234445444444457999999977 555433
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.02 E-value=0.98 Score=48.17 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=42.6
Q ss_pred hhHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhccchhhHh
Q psy2391 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN-RTINISDNGIGMNRNDIITNLGTIAKSGTQEFFS 116 (642)
Q Consensus 38 ~i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~-~~i~I~DnGiGMt~~el~~~l~~ia~Sg~~~f~~ 116 (642)
..++.||+.||+...-. ......+.|.+..+.++ -.|+|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~~-----------~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYA-----------TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHBCC-----------SCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhccc-----------CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 46899999999998621 01123455555555333 379999999999864 10
Q ss_pred hhhcCccccccccccccchhhhhhcccCEEEEEee
Q psy2391 117 KLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSR 151 (642)
Q Consensus 117 ~~~~~~~~~~~~iG~fGiGf~S~f~v~~~v~V~Sr 151 (642)
. +.-|.|++-+=.+|+++.+.+.
T Consensus 351 -------~-----~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 351 -------A-----RGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp ------------------CHHHHHTTSSEEEEEEE
T ss_pred -------C-----CCCCcHHHHHHHHHHheeeEEC
Confidence 0 2347777777777888876544
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=73.81 E-value=2.6 Score=40.41 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=34.3
Q ss_pred hHHHHHHhcHHHHhHhhhhhhhcccccCCCCCCceEEEEE--c--CCCCEEEEEeCCCCCCHHHHHHHH
Q psy2391 39 IFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITF--D--KDNRTINISDNGIGMNRNDIITNL 103 (642)
Q Consensus 39 i~lRELIqNA~DA~~~~~~~~~~~~~~~~~~~~~~I~I~~--d--~~~~~i~I~DnGiGMt~~el~~~l 103 (642)
.-+-.|+.||.+|+.... . +...-.|.|.+ + .+.-.|.|.|+|.|++.+.+...|
T Consensus 108 ~~lgnLi~na~~Ai~~~~-----~-----~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 108 QKLAKLMRKLFHLFDQAV-----S-----RESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHHHHB-----C-----TTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHHHHhhh-----c-----cCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 345679999999986420 0 11233455544 3 233479999999999998776544
No 69
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=22.31 E-value=1e+02 Score=24.36 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=32.6
Q ss_pred hhcccCEEEEEeecCCCCCCceEEEEEeCCcceEEEecCCCCCccEEEEEec
Q psy2391 139 AFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLR 190 (642)
Q Consensus 139 ~f~v~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~v~~~~~~~~GT~I~l~lk 190 (642)
.|-++|+|.|++.... +..|+.+..+++.-.-+.+ ...++|+++-+
T Consensus 17 ~F~~GDHVkVi~G~~~--getGlVV~v~~d~v~v~SD----~t~~Ei~V~~~ 62 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFE--GDTGLIVRVEENFVILFSD----LTMHELKVLPR 62 (69)
T ss_dssp SCCTTCEEEESSSTTT--TCEEEEEEECSSCEEEEES----SSCSEEEECTT
T ss_pred eccCCCeEEEeccEEc--CceEEEEEEeCCEEEEEeC----CCCCEEEEEhH
Confidence 4788999999998775 7889999887664333333 34667777643
Done!