RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2391
(642 letters)
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 955 bits (2472), Expect = 0.0
Identities = 371/631 (58%), Positives = 479/631 (75%), Gaps = 25/631 (3%)
Query: 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSD 71
+T FQAEVK +L LMIHSLYSNKEIFLRELISNASDA+DKLRFE + + + + D
Sbjct: 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGD 61
Query: 72 LEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQ 131
L+I I+FDK+ RT+ ISDNGIGM R ++I NLGTIAKSGT+EF KL GDQKKD+ LIGQ
Sbjct: 62 LKIRISFDKEARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQ 121
Query: 132 FGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRS 191
FGVGFYSAF+VA K+ V +R E V WES+G G +TIE I K RGT+ITL+L+
Sbjct: 122 FGVGFYSAFMVADKVTVITRSAGPA-AEAVRWESDGEGEYTIEEIEKEERGTEITLHLKE 180
Query: 192 KEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARG 251
E+E+L W+++SII+KYSD I PIK+ KE E IN ASALW R
Sbjct: 181 DEDEFLDEWRIRSIIKKYSDFIPVPIKLEKEEE--------------ETINSASALWTRS 226
Query: 252 KSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGI 311
KSEITDE+Y EFYKH++HDF+ PL + HN+VEG EY LLYIP +AP+DL++R+++ G+
Sbjct: 227 KSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFNRDRKGGL 286
Query: 312 KLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRIL 371
KLYVKRVFIMDDAE+LLP YLRFVKGVIDS +LPLNVSREILQE R VK IR+ TK++L
Sbjct: 287 KLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVL 346
Query: 372 NILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQN 431
+ LE L+ ND+E KY FWKEFG V+KEG+ ED N+E+++KLLRFAST+ +
Sbjct: 347 DELEKLAK-NDRE---KYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTHEG---KY 399
Query: 432 VSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIP 491
VSL +Y++RMKEGQ KIYYITG++ ++ KNSPHLE+F+KK IEVLLLTD +DE+ +S++
Sbjct: 400 VSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLE 459
Query: 492 KFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRL 551
+F+ K S+A+G+LDLG E+E +K++++E E +F+ L+E +K+ L +K KDVR+++RL
Sbjct: 460 EFDGKPFKSVARGDLDLGK-EDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVRLSHRL 518
Query: 552 TDSPACLVVDENEPSGNMIRMLKAAGQETPNSKPILEINPNHALIQRI--QLNNDNIHNW 609
TDSPACLV DE + S M ++LKAAGQE P SKPILEINPNH L++++ + + +
Sbjct: 519 TDSPACLVADEGDMSTQMEKLLKAAGQEVPESKPILEINPNHPLVKKLADEADEAKFKDL 578
Query: 610 SHILFDQALLAENGVLNDPMNFVKRLNEMLL 640
+ +L+DQALLAE G L DP FVKRLNE+LL
Sbjct: 579 AELLYDQALLAEGGSLEDPAAFVKRLNELLL 609
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 815 bits (2107), Expect = 0.0
Identities = 358/632 (56%), Positives = 478/632 (75%), Gaps = 18/632 (2%)
Query: 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNS 70
+++T GFQAEVK +L LMIHSLYSNKEIFLRELISNASDA+DKLRFE +++ + +S
Sbjct: 2 MEQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDS 61
Query: 71 DLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIG 130
DL I I+FDKDN+T+ ISDNGIGM ++++I NLGTIAKSGT+EF LS DQK D+ LIG
Sbjct: 62 DLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQK-DSDLIG 120
Query: 131 QFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINK-TNRGTDITLYL 189
QFGVGFYSAF+VA K+ V +R E WES+G G +T+E I+K RGT+ITL+L
Sbjct: 121 QFGVGFYSAFMVADKVTVITRSAGED--EAYHWESDGEGEYTVEDIDKEPRRGTEITLHL 178
Query: 190 RSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWA 249
+ +E+E+L W+L+ I++KYSDHI++PI + E +E+ E+E IN+A ALW
Sbjct: 179 KEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDEEVI------EWETINKAKALWT 232
Query: 250 RGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRN 309
R KSEITDE+Y EFYKH++HDF+ PL++ HN VEGR EY LL+IPS+AP+DL+ R+++
Sbjct: 233 RNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRRDRKR 292
Query: 310 GIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKR 369
G+KLYV RVFIMDDAE LLP YLRFV+GVIDS +LPLNVSREILQ++R + IR+ TK+
Sbjct: 293 GLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKK 352
Query: 370 ILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDI 429
+L++LE L+ +D E KY FWK+FG V+KEG+ ED NKE++ LLRF ST++ +
Sbjct: 353 VLSMLEKLA-KDDPE---KYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGE- 407
Query: 430 QNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSF 489
+ VSL +Y+ RMKEGQ +IYYITGE+Y++ K SPHLE+F+ K IEVLLLTDR+DE+ML+
Sbjct: 408 KTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTM 467
Query: 490 IPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTY 549
+P+FE K SI KG+LDL LE E D+ +E + +F+ L+E +K+IL +K KDVR+++
Sbjct: 468 LPEFEGKPFKSITKGDLDLELLEEE-DEADSEEEKKEFKPLLERVKEILGDKVKDVRLSH 526
Query: 550 RLTDSPACLVVDENEPSGNMIRMLKAAGQETPNSKPILEINPNHALIQRIQ--LNNDNIH 607
RLTDSPACL D + S M R+LKA GQE P SK ILEINPNH L++++ + ++
Sbjct: 527 RLTDSPACLTTDGADLSTQMERLLKAQGQEVPESKKILEINPNHPLVKKLASLEDEASVA 586
Query: 608 NWSHILFDQALLAENGVLNDPMNFVKRLNEML 639
+ +L+DQALLAE G L DP F++RLN++L
Sbjct: 587 DLVELLYDQALLAEGGPLEDPAAFIERLNDLL 618
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 452 bits (1163), Expect = e-151
Identities = 253/676 (37%), Positives = 414/676 (61%), Gaps = 64/676 (9%)
Query: 14 QTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLE 73
+T FQAE+ ++ L+I++ YSNKEIFLRELISNASDA DK+R++ + + + ++ L
Sbjct: 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLC 62
Query: 74 IIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFG 133
I + DK+N+T+ + DNGIGM + D++ NLGTIA+SGT+ F L + D S+IGQFG
Sbjct: 63 IRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEAL--EAGGDMSMIGQFG 120
Query: 134 VGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTN--RGTDITLYLRS 191
VGFYSA++VA ++ V S++ + E +WES G FTI + +++ RGT ITL+L+
Sbjct: 121 VGFYSAYLVADRVTVTSKNNSD---ESYVWESSAGGTFTITSTPESDMKRGTRITLHLKE 177
Query: 192 KEEEYLSSWKLKSIIRKYSDHISFPIKMY------KETWDEEKKETVISNN--------- 236
+ EYL +LK +I+K+S+ I + I++ KE DE++++T ++
Sbjct: 178 DQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEE 237
Query: 237 --------------------EFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLI 276
E+EV N+ LW R ++T E+Y FYK IS+D+E P
Sbjct: 238 VKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAA 297
Query: 277 YTHNHVEGRNEYIQLLYIPSRAPYDLWDRNK-RNGIKLYVKRVFIMDDAEQLLPTYLRFV 335
H VEG+ E+ ++++P RAP+D+++ NK RN IKLYV+RVFIMD+ E L P +L FV
Sbjct: 298 TKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFV 357
Query: 336 KGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKE 395
KGV+DS +LPLN+SRE LQ+++ +KVIR+ K+ L + ++++ + + Y F+++
Sbjct: 358 KGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKE-----DYKQFYEQ 412
Query: 396 FGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGEN 455
FG+ IK GI ED N++++ +LLRF ST + ++ +L DY+ RMK GQ IYYITG++
Sbjct: 413 FGKNIKLGIHEDTANRKKLMELLRFYSTESGEEM--TTLKDYVTRMKAGQKSIYYITGDS 470
Query: 456 YKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENES 515
K ++ SP +E +++ +EVL +T+ +DE+++ + FE+K+ + K + E+E
Sbjct: 471 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFE--ESEE 528
Query: 516 DKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKA 575
+K+Q++E + + L + MK++L +K + V V+ RL+ SP LV E S +M ++++
Sbjct: 529 EKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRN 588
Query: 576 AGQETPN------SKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAENG 623
+ SK +E+NP H +I+ ++ N+ + + +LFD +LL
Sbjct: 589 QALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGF 648
Query: 624 VLNDPMNFVKRLNEML 639
L DP + +R+N M+
Sbjct: 649 QLEDPTGYAERINRMI 664
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 369 bits (948), Expect = e-121
Identities = 192/498 (38%), Positives = 295/498 (59%), Gaps = 62/498 (12%)
Query: 195 EYLSSWKLKSIIRKYSDHISFPIKMY------KETWDEE--------------------- 227
EYL ++K +++K+S+ I++PI ++ KE DEE
Sbjct: 1 EYLEERRIKELVKKHSEFINYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEE 60
Query: 228 ------------KKETVISN-NEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKP 274
K + V E+E++N+ +W R ++T E+Y FYK +++D+E P
Sbjct: 61 VDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVTKEEYAAFYKSLTNDWEDP 120
Query: 275 LIYTHNHVEGRNEYIQLLYIPSRAPYDLWD-RNKRNGIKLYVKRVFIMDDAEQLLPTYLR 333
L H VEG+ E+ +L++P RAP+DL++ K+N IKLYV+RVFIMDD E L+P YL
Sbjct: 121 LAVKHFSVEGQLEFRAILFVPKRAPFDLFESYKKKNNIKLYVRRVFIMDDCEDLIPEYLS 180
Query: 334 FVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFW 393
FVKGV+DS +LPLN+SRE+LQ+++ +KVIR+ K+ L + +++ DKE+ Y F+
Sbjct: 181 FVKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLEMFNEIA--EDKEQ---YKKFY 235
Query: 394 KEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITG 453
+EF + IK GI ED N+ +++KLLRF ST + ++ SL DY+ RMKEGQ IYYITG
Sbjct: 236 EEFSKNIKLGIHEDAANRAKLAKLLRFESTKSGDEL--TSLDDYVTRMKEGQKDIYYITG 293
Query: 454 ENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLEN 513
E+ K V+ SP LE +KK EVL +TD +DE+ + + +FE K+LV++ K L L E+
Sbjct: 294 ESKKQVEKSPFLERLKKKGYEVLYMTDPIDEYAMQQLKEFEGKKLVNVTKEGLKLE--ES 351
Query: 514 ESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRML 573
E +KK+++E + +F+ L + MK IL +K + V V+ RL DSP LV + S NM R++
Sbjct: 352 EEEKKKREELKKEFEELCKWMKDILGDKVEKVVVSNRLVDSPCALVTSQYGWSANMERIM 411
Query: 574 KA------AGQETPNSKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAE 621
KA + +SK LEINP H +I+ ++ N+ + + + +L++ ALL
Sbjct: 412 KAQALRDSSMSAYMSSKKTLEINPRHPIIKELRKRVEADKNDKTVKDLARLLYETALLTS 471
Query: 622 NGVLNDPMNFVKRLNEML 639
L DP F R+ M+
Sbjct: 472 GFSLEDPKAFASRIYRMI 489
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 338 bits (867), Expect = e-105
Identities = 231/660 (35%), Positives = 369/660 (55%), Gaps = 78/660 (11%)
Query: 2 KNSEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELIN 61
+P S I++ Q +Q EV ++ ++++SLY+ KE+FLRELISNA+DAL+K+RF ++
Sbjct: 57 DGEKPTSGIEQHQ---YQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLS 113
Query: 62 NKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGD 121
++ + + LEI I+ +K+ ++I+D GIGM + D+I NLGTIAKSGT F +S
Sbjct: 114 DESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAIS-K 172
Query: 122 QKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINK--- 178
D SLIGQFGVGFYSAF+VA K+IV +++ N E +WES FTI +
Sbjct: 173 SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNND---EQYIWESTADAKFTIYKDPRGST 229
Query: 179 TNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMY------------------ 220
RGT I+L+L+ ++ KL +I KYS I +PI +
Sbjct: 230 LKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEME 289
Query: 221 ----------KETWDEEKKETVISNN--EFEVINQASALWARGKSEITDEQYIEFYKHIS 268
+ET D KK + +++++N+ +W R E+TDE Y +F+ +S
Sbjct: 290 NDPNYDSVKVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLS 349
Query: 269 HDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDR--NKRNGIKLYVKRVFIMDDAEQ 326
++PL + H EG E+ L+YIPSRAP + D K+N IKLYV+RV + D+ +
Sbjct: 350 GFNDEPLYHIHFFAEGEIEFKCLIYIPSRAP-SINDHLFTKQNSIKLYVRRVLVADEFVE 408
Query: 327 LLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEK- 385
LP Y+ FVKGV+DS++LPLNVSRE LQ+++ +K + + ++IL+ L K K
Sbjct: 409 FLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTFRTLYKEGKKNKE 468
Query: 386 -----------------IIK-------YANFWKEFGQVIKEGIGEDNNNKERISKLLRFA 421
I K Y +KE+ + +K G ED+ N+ +I KLL F
Sbjct: 469 TLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFK 528
Query: 422 STNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDR 481
+ + +++SL YI+ MK Q IYY +G++Y+ + P L+IF+KK+I+V+ LT+
Sbjct: 529 TMLHP---KSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTES 585
Query: 482 VDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEK 541
VDE + + +++ K+ SI KG + E+E KK++++ + ++ LI+ + L +
Sbjct: 586 VDESCVQRVQEYDGKKFKSIQKGEITFELTEDE--KKKEEKVKKMYKALIDVISDTLRNQ 643
Query: 542 AKDVRVTYRLTDSPACLVVDENEPSGNMIRMLK-----AAGQETPNSKPILEINPNHALI 596
V ++ RL D+P +V E SG M +++K + + + + ILEINP+H ++
Sbjct: 644 IFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNNSDQIKAMSGQKILEINPDHPIM 703
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional.
Length = 601
Score = 136 bits (346), Expect = 5e-34
Identities = 86/351 (24%), Positives = 149/351 (42%), Gaps = 58/351 (16%)
Query: 18 FQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIIT 77
FQ +++ V+ L+ LYS+ +++REL+ NA DA+ R + I
Sbjct: 5 FQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARR-------ALDPTAPGRIRIEL 57
Query: 78 FDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFY 137
D T+ + DNGIG+ ++ L TI +S ++ + G + D +GQFG+G
Sbjct: 58 TDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRD---ENLGFARND--FLGQFGIGLL 112
Query: 138 SAFIVAKKIIVKSRH-VNSPITEGVLWESEGSGNFTIETINKTNR--GTDITLYLRSKEE 194
S F+VA +I+V SR + P E W + G +++ + GT + L R E
Sbjct: 113 SCFLVADEIVVVSRSAKDGPAVE---WRGKADGTYSVRKLETERAEPGTTVYLRPRPDAE 169
Query: 195 EYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWARGKS- 253
E+L ++ + +KY + PI E +N+ W R
Sbjct: 170 EWLERETVEELAKKYGSLLPVPI---------------RVEGEKGGVNETPPPWTRDYPD 214
Query: 254 -EITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNE--------YIQLLYIPSRAPYDLWD 304
E E + + + + F PL + + Y+ +P
Sbjct: 215 PETRREALLAYGEEL-LGFT-PL----DVIPLDVPSGGLEGVAYV----LPYAVSP---- 260
Query: 305 RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQE 355
R ++Y+KR+ + ++AE LLP + FV+ V++++ L SRE L E
Sbjct: 261 -AARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYE 310
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine
kinase-, DNA gyrase B-, phytochrome-like ATPases.
Length = 111
Score = 50.7 bits (122), Expect = 6e-08
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 23/121 (19%)
Query: 36 NKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMN 95
LR+++SN D K E + + + D D+ I + DNG G+
Sbjct: 1 GDPDRLRQVLSNLLDNAIKYTPE----------GGRITVTLERDGDHVEITVEDNGPGIP 50
Query: 96 RNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNS 155
D+ + FF K + IG G+G + + + +
Sbjct: 51 PEDLEKIF--------EPFFR-----TDKRSRKIGGTGLGLSIVKKLVELHGGEISVESE 97
Query: 156 P 156
P
Sbjct: 98 P 98
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents the
structurally related ATPase domains of histidine kinase,
DNA gyrase B and HSP90.
Length = 111
Score = 49.2 bits (118), Expect = 2e-07
Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 46/155 (29%)
Query: 36 NKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMN 95
E LR+++SN D K + ++E+ + D I + DNGIG+
Sbjct: 1 GDEDRLRQVLSNLLDNAIK----------HAPAGGEIEVTLERDGGRLRITVEDNGIGIP 50
Query: 96 RNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNS 155
D+ + FF + +G G+G + +
Sbjct: 51 PEDLPKIF--------EPFFR-----TDSSSRKVGGTGLGLSIVRKLVELH--------- 88
Query: 156 PITEGVLWESEGSGNFTIETINKTNRGTDITLYLR 190
TI ++ GT T L
Sbjct: 89 --------------GGTITVESEPGGGTTFTFTLP 109
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family
includes several ATP-binding proteins for example:
histidine kinase, DNA gyrase B, topoisomerases, heat
shock protein HSP90, phytochrome-like ATPases and DNA
mismatch repair proteins.
Length = 103
Score = 48.4 bits (116), Expect = 4e-07
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 50/152 (32%)
Query: 38 EIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRN 97
+ L L+SNA + + I + D D+ I + DNG G+
Sbjct: 2 QQVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEE 48
Query: 98 DIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPI 157
D+ + + G G+G + +
Sbjct: 49 DLERIFERFSDGSR--------------SRKGGGTGLGLSIVKKLVELH----------- 83
Query: 158 TEGVLWESEGSGNFTIETINKTNRGTDITLYL 189
IE ++ GT T+ L
Sbjct: 84 ------------GGRIEVESEPGGGTTFTITL 103
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents,
additionally, the structurally related ATPase domains of
histidine kinase, DNA gyrase B and HSP90.
Length = 134
Score = 44.2 bits (105), Expect = 2e-05
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 32/128 (25%)
Query: 34 YSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIG 93
Y+ E + ELI N+ DA D ++++I I D+ I+I DNG G
Sbjct: 1 YTL-EDAIAELIDNSIDA----------------DATNVKISIDPDRGEDGISIEDNGGG 43
Query: 94 MNRNDIITNL--GTIAKSGTQEFFSKLSGDQKKDASLIGQFGVG-FYSAFIVAKKIIVKS 150
M+ ++ L G +K G ++ + +G+ G+G ++ + +K+ V S
Sbjct: 44 MSYEELRNALKLGRSSKEGERDSTT------------LGRKGIGMKLASLSLGRKLTVTS 91
Query: 151 RHVNSPIT 158
+ T
Sbjct: 92 KKEGESST 99
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional.
Length = 247
Score = 31.8 bits (72), Expect = 0.89
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 44 LISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDN--RTINISDNGIGMNRNDIIT 101
L ++ + R E I N+ +S + +E+ I N R + GI D I
Sbjct: 16 LADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIG 75
Query: 102 NLGTIAKS 109
LGTI S
Sbjct: 76 TLGTIINS 83
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 31.8 bits (72), Expect = 1.1
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 304 DRNKRNGIKLYVKRVFIMD----DAEQLLPTYLRFVKGVIDSN-NLPLNVSREILQ-ESR 357
D K+ L K + MD + EQL Y+ F+KGV+ + N P R+ L+ +
Sbjct: 178 DEAKKFTFNLMAKHIMSMDPGEEETEQLKKEYVTFMKGVVSAPLNFPGTAYRKALKSRAT 237
Query: 358 DVKVIREGSTKRILNILEDLSTSNDKEK---IIKYANFWKE 395
+K I +RI + E+ + + + ++K++N E
Sbjct: 238 ILKFIERKMEERIEKLKEEDESVEEDDLLGWVLKHSNLSTE 278
>gnl|CDD|151407 pfam10960, DUF2762, Protein of unknown function (DUF2762). Members
in this family of proteins are annotated as holin-like
protein BhlA however this cannot be confirmed.
Length = 64
Score = 28.5 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 518 KQQKETETKFQNLIEEMKK---ILSEKAKDVR 546
K+ KE E+K+QN+IEE+ I +K KDV
Sbjct: 28 KENKERESKYQNIIEEITDKLEIFEDKYKDVS 59
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 336
Score = 30.9 bits (69), Expect = 1.9
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 29 MIHSLYSNKEIFLRELISNAS------DALDKLRFELINNKFISTDNSDLEIIITFDKDN 82
++ L K I L + + L ++ L++N T ++ I + D +
Sbjct: 200 LLAPLAQEKGIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDEQ 259
Query: 83 RTINISDNGIGMNRNDI 99
TI++ D G G+ ++
Sbjct: 260 VTISVEDTGPGIPEEEL 276
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 31.0 bits (70), Expect = 2.1
Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 35/204 (17%)
Query: 362 IREGSTKRILNI----LEDLSTSNDKEKIIKYA---NFWKEFGQVIKEGIGEDNNNKERI 414
IREG+ + + I L + + +I A G ED+ K+
Sbjct: 328 IREGAIETLTEIWKKSLPHMKGYITCDGVINLARLEVILAILGSF------EDDIFKKDH 381
Query: 415 SKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIE 474
+ R +++ K KEG + + E K + + + Q + +
Sbjct: 382 IQEERKN--------ESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKK 433
Query: 475 VLLLTDRVDEWMLSFIPKFENK---ELVSIAKGNLDLG-----------NLENESDKKQQ 520
L D L+ + K + +L L +LE +
Sbjct: 434 SPDLPDEEFIDTLALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSP 493
Query: 521 KETETKFQNLIEEMKKILSEKAKD 544
E E +F++ ++ ++KI +
Sbjct: 494 DEDEEEFESEVDSIRKIPDKYVNI 517
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band
7 domain of flotillin (reggie) like proteins. This
subgroup contains proteins similar to stomatin,
prohibitin, flotillin, HlfK/C and podicin. These two
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and, interact with a variety
of proteins. Flotillins may play a role in the
progression of prion disease, in the pathogenesis of
neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis.
Length = 128
Score = 28.7 bits (65), Expect = 4.2
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 27 QLMIHSLYSNKEIFLRELISNASDALDKLRFELIN 61
+ + +Y +++ F ++ + L+K+ EL +
Sbjct: 74 TMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDS 108
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 29.3 bits (66), Expect = 4.9
Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 36/179 (20%)
Query: 405 GEDNNNKE---RISKLLRFASTNNDSDIQNVSLMDYIKRMK-----------EGQNKIYY 450
GE NN + RI + + + N + D+ K++ E ++ +
Sbjct: 2 GEMNNLQIAIARIQRGINWVKRN---------IRDFFKKLLKKKPKEIDEQTEAEDNLLD 52
Query: 451 ITGENYKSVKNSP----HLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNL 506
++ S + +E + D + +SFI V IA G
Sbjct: 53 KAVDDILSNHYLKEGNGTTSVAIGDGMEKTIHGDVKESDPMSFITNPSLTVSVPIASGES 112
Query: 507 DLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEP 565
DL NL +E + EE KK +E K + S VD P
Sbjct: 113 DLENLNDED------TSSESSYGFKEESKKGSAETLKLEEKD---SSSSEGSTVDLEPP 162
>gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional.
Length = 506
Score = 29.9 bits (67), Expect = 5.1
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 1 MKNSEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKE-----IFLREL--ISNASDALD 53
+K+ E + +KK+Q FQ VK ++ + + IF E+ I A+
Sbjct: 286 LKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMK 345
Query: 54 KLRFELINNKFISTDN-SDLEIIIT--------FDKDNRTINISDNGIGMNRNDIITNLG 104
+ EL N +S + + ++++T F K N N+ + + M + DI +
Sbjct: 346 NVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFAENLYNQSVQMFKEDIGQHKF 405
Query: 105 TIAKSG 110
I K+G
Sbjct: 406 AIFKAG 411
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 29.5 bits (67), Expect = 5.8
Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 33/236 (13%)
Query: 201 KLKSIIRKYSDHISFPIKMYKETWDE-----EKKETVISNNEFEVINQASALWARGKSEI 255
KL+S + K + K+ ++ +E E++ I E+ + S L K
Sbjct: 61 KLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELE 120
Query: 256 TDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRNGIKLYV 315
+ + +E + + D +Y+ P D + K V
Sbjct: 121 QEIERLEPWGNFDLDLSL---------LLGFKYVS--VFVGTVPEDKLEELKLESDVENV 169
Query: 316 KRVFIMDDAEQLLPTYLRFVKGVIDSNN---LPLNVSREILQESRDVKVIREGSTKRILN 372
+ + + + +K + D L R L+E + + +
Sbjct: 170 ---EYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE 226
Query: 373 I---LEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNN 425
I E L E++ + A + E + E ER L +F T+
Sbjct: 227 IEKERESL-----LEELKELAKKYLEELLALYE---YLEIELERAEALSKFLKTDK 274
>gnl|CDD|226369 COG3851, UhpB, Signal transduction histidine kinase,
glucose-6-phosphate specific [Signal transduction
mechanisms].
Length = 497
Score = 29.4 bits (66), Expect = 6.6
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 58 ELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSK 117
EL+NN D S + I + + + I D+G G+ + G +G +E S
Sbjct: 417 ELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPGSGVQGFGL---TGMRERVSA 473
Query: 118 LSGD 121
L G
Sbjct: 474 LGGT 477
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA
replication, recombination, and repair].
Length = 638
Score = 29.6 bits (67), Expect = 6.6
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 56/196 (28%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRT-INISDNGIGMNRNDI 99
++EL+ N+ DA + I I + I + DNG G+++ D
Sbjct: 28 VKELVENSLDA-----------------GAT-RIDIEVEGGGLKLIRVRDNGSGIDKED- 68
Query: 100 ITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGF-----YSAFIVAKKIIVKSRHVN 154
+ + + SK++ L +GF S V+ ++ + SR
Sbjct: 69 ------LPLALLRHATSKIA----SLEDLFRIRTLGFRGEALASIASVS-RLTITSR--T 115
Query: 155 SPITEGVLWESEGSGNFTIETINKTNRGTDITL------------YLRSKEEEYLSSWKL 202
+ +EG +EG G GT + + +L+S++ E+ +
Sbjct: 116 AEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLKSEKTEFG---HI 172
Query: 203 KSIIRKYS---DHISF 215
+I +Y+ ISF
Sbjct: 173 TELINRYALAHPDISF 188
>gnl|CDD|151494 pfam11047, SopD, Salmonella outer protein D. SopD is a type III
virulence effector protein whose structure consists of
38% alpha-helix and 26% beta-strand.
Length = 319
Score = 28.8 bits (64), Expect = 8.5
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 358 DVKVIREGSTKRILNILEDL---STSNDKE------------KIIKYANFWKEFGQVIKE 402
D KVI + + ILNI +D S D+E KI ++ +EF +K+
Sbjct: 115 DDKVIDKCNIHDILNISDDAIFESMEEDEEELFLKICEKIGAKISRHPELLEEFANKLKD 174
Query: 403 GIGEDNNNKERISKLLR 419
+ ED + K + +L+R
Sbjct: 175 AVNEDADIKAAVYELMR 191
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 29.0 bits (66), Expect = 9.4
Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 40/218 (18%)
Query: 340 DSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQV 399
D N+P ++ E L+ + KV+ + +K+ I+ +F K F +
Sbjct: 12 DQINIPDDLQSEALESAEIEKVVVDKKSKK-------WEFHLKFPNILPIEDF-KLFKEK 63
Query: 400 IKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKR-MKEGQNKIYYITGENYKS 458
+K+ + K + F+ + L+DY +++ + K
Sbjct: 64 LKQSFSHIADIK------VTFSIEVENITFTEELLLDYWNEIIEKAKKNSPLFKSLLKKQ 117
Query: 459 ------------VKNSPHLEIFQKKSIEVLLLTDRVDEWMLSF-IPKFENKELVSIAKGN 505
V N + +KK + L+ + F + + +K
Sbjct: 118 KVEVEGNKLIIKVNNEIERDHLKKKHLPKLI------KQYEKFGFGILKIDFEIDDSKEE 171
Query: 506 LDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAK 543
L + + ++++E E + +E MKK+ +EK K
Sbjct: 172 L------EKFEAQKEEEDEKLAKEALEAMKKLEAEKKK 203
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.373
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,637,635
Number of extensions: 3291006
Number of successful extensions: 2825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2771
Number of HSP's successfully gapped: 101
Length of query: 642
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 539
Effective length of database: 6,369,140
Effective search space: 3432966460
Effective search space used: 3432966460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.6 bits)