RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2391
(642 letters)
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 953 bits (2466), Expect = 0.0
Identities = 338/633 (53%), Positives = 455/633 (71%), Gaps = 12/633 (1%)
Query: 10 IKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDN 69
+K ++T GFQ+EVK +L LMIHSLYSNKEIFLRELISNASDA DKLRF ++N + +
Sbjct: 1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGD 60
Query: 70 SDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLI 129
+L + ++FDKD RT+ ISDNG+GM R+++I +LGTIAKSGT+ F L DQ KD+ LI
Sbjct: 61 GELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLI 120
Query: 130 GQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYL 189
GQFGVGFYSAFIVA K+ V++R GV WES G G +T+ I K +RGT+ITL+L
Sbjct: 121 GQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHL 180
Query: 190 RSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWA 249
R E+E+L W+++SII KYSDHI+ P+++ K + + +E IN+A ALW
Sbjct: 181 REGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVI-----SWEKINKAQALWT 235
Query: 250 RGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRN 309
R KSEITDE+Y EFYKHI+HDF PL ++HN VEG+ EY LLYIPS+AP+D+W+R+ ++
Sbjct: 236 RNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKH 295
Query: 310 GIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKR 369
G+KLYV+RVFIMDDAEQ +P YLRFV+G+IDS++LPLNVSREILQ+S + +R TKR
Sbjct: 296 GLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKR 355
Query: 370 ILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDI 429
+L +LE L+ +D E KY FW++FG V+KEG ED N+E I+KLLRFAST+ DS
Sbjct: 356 VLQMLEKLAK-DDAE---KYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSA 411
Query: 430 QNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSF 489
Q VSL DY+ RMKEGQ KIYYIT ++Y + K+SPHLE+ +KK IEVLLL+DR+DEWM+++
Sbjct: 412 QTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNY 471
Query: 490 IPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTY 549
+ +F+ K S++K + L L +E + KE E I+ +K +L E+ KDVR+T+
Sbjct: 472 LTEFDGKPFQSVSKVDESLEKLADE-VDESAKEAEKALTPFIDRVKALLGERVKDVRLTH 530
Query: 550 RLTDSPACLVVDENEPSGNMIRMLKAAGQETPNSKPILEINPNHALIQRIQLNNDN--IH 607
RLTD+PA + D +E S M ++ AAGQ+ P K I E+NP+H L++R D
Sbjct: 531 RLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADTEDEAKFS 590
Query: 608 NWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640
W +L DQALLAE G L DP F++R+N++L+
Sbjct: 591 EWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 892 bits (2308), Expect = 0.0
Identities = 251/652 (38%), Positives = 388/652 (59%), Gaps = 41/652 (6%)
Query: 12 KKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSD 71
+ FQAEV +++L+I+SLY NKEIFLRELISNASDALDK+R + ++ N +
Sbjct: 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEE 80
Query: 72 LEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLS---GDQKKDASL 128
L + I DK+ ++++D G+GM R +++ NLGTIAKSGT EF +K++ D + + L
Sbjct: 81 LTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSEL 140
Query: 129 IGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINK--TNRGTDIT 186
IGQFGVGFYSAF+VA K+IV S+H N +WES+ + I RGT IT
Sbjct: 141 IGQFGVGFYSAFLVADKVIVTSKHNND---TQHIWESDSNEFSVIADPRGNTLGRGTTIT 197
Query: 187 LYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASA 246
L L+ + +YL +K++++KYS I+FPI ++ K ++E++N
Sbjct: 198 LVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVW----DWELMNDIKP 253
Query: 247 LWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD-- 304
+W R E+ D++Y FYK S + + P+ Y H EG + +L++P+ AP L+D
Sbjct: 254 IWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEY 313
Query: 305 -RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIR 363
K + IKLYV+RVFI DD ++P YL FVKGV+DS++LPLNVSRE LQ+ + +KVIR
Sbjct: 314 GSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIR 373
Query: 364 EGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFAST 423
+ ++ L++++ ++ D++ FWKEFG IK G+ ED++N+ R++KLLRF S+
Sbjct: 374 KKLVRKTLDMIKKIA---DEK---YNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSS 427
Query: 424 NNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVD 483
++ S SL Y++RMKE Q+KIY++ G + K ++SP +E KK EV+ LT+ VD
Sbjct: 428 HHPS--DITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVD 485
Query: 484 EWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMK-KILSEKA 542
E+ + +P+F+ K ++AK + E+E K+ ++ E +F+ L+ MK K L +K
Sbjct: 486 EYCIQALPEFDGKRFQNVAKEGVKFD--ESEKTKESREAIEKEFEPLLNWMKDKALKDKI 543
Query: 543 KDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQET---------PNSKPILEINPNH 593
+ V+ RLT+SP LV + SGNM R++KA +T + K EINP H
Sbjct: 544 EKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRH 603
Query: 594 ALIQRIQL------NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEML 639
LI+ + ++ + + + +LF+ A L +L D + R+ ML
Sbjct: 604 PLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERML 655
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 880 bits (2275), Expect = 0.0
Identities = 311/569 (54%), Positives = 416/569 (73%), Gaps = 10/569 (1%)
Query: 10 IKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDN 69
+K ++T GFQ+EVK +L LMIHSLYSNKEIFLRELISNASDA DKLRF ++N + +
Sbjct: 1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGD 60
Query: 70 SDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLI 129
+L + ++FDKD RT+ ISDNG+GM R+++I +LGTIAKSGT+ F L DQ KD+ LI
Sbjct: 61 GELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLI 120
Query: 130 GQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYL 189
GQFGVGFYSAFIVA K+ V++R GV WES G G +T+ I K +RGT+ITL+L
Sbjct: 121 GQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHL 180
Query: 190 RSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASALWA 249
R E+E+L W+++SII KYSDHI+ P+++ K + + +E IN+A ALW
Sbjct: 181 REGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVI-----SWEKINKAQALWT 235
Query: 250 RGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDRNKRN 309
R KSEITDE+Y EFYKHI+HDF PL ++HN VEG+ EY LLYIPS+AP+D+W+R+ ++
Sbjct: 236 RNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKH 295
Query: 310 GIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKR 369
G+KLYV+RVFIMDDAEQ +P YLRFV+G+IDS++LPLNVSREILQ+S + +R TKR
Sbjct: 296 GLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKR 355
Query: 370 ILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDI 429
+L +LE L+ +D E KY FW++FG V+KEG ED N+E I+KLLRFAST+ DS
Sbjct: 356 VLQMLEKLAK-DDAE---KYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSA 411
Query: 430 QNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSF 489
Q VSL DY+ RMKEGQ KIYYIT ++Y + K+SPHLE+ +KK IEVLLL+DR+DEWM+++
Sbjct: 412 QTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNY 471
Query: 490 IPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTY 549
+ +F+ K S++K + L L +E + KE E I+ +K +L E+ KDVR+T+
Sbjct: 472 LTEFDGKPFQSVSKVDESLEKLADE-VDESAKEAEKALTPFIDRVKALLGERVKDVRLTH 530
Query: 550 RLTDSPACLVVDENEPSGNMIRMLKAAGQ 578
RLTD+PA + D +E S M ++ AAGQ
Sbjct: 531 RLTDTPAIVSTDADEMSTQMAKLFAAAGQ 559
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 799 bits (2065), Expect = 0.0
Identities = 250/685 (36%), Positives = 400/685 (58%), Gaps = 73/685 (10%)
Query: 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDL 72
+T FQAE+ ++ L+I+++YSNKEIFLRELISNASDALDK+R++ +++ DL
Sbjct: 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDL 62
Query: 73 EIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQF 132
I IT + + + I D+GIGM + ++I NLGTIAKSGT+ F LS D S+IGQF
Sbjct: 63 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALS--AGADVSMIGQF 120
Query: 133 GVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTI---ETINKTNRGTDITLYL 189
GVGFYS F+VA ++ V S+ + E +WES G+FT+ E + RGT + L+L
Sbjct: 121 GVGFYSLFLVADRVQVISKSNDD---EQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL 177
Query: 190 RSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDE----------------------- 226
+ + EYL ++K +I+++S+ +++PI++ E
Sbjct: 178 KDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDE 237
Query: 227 ------------------EKKETVISNNEFEVINQASALWARGKSEITDEQYIEFYKHIS 268
+ K+ E E +N+ LW R S+IT E+Y FYK IS
Sbjct: 238 DDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSIS 297
Query: 269 HDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD-RNKRNGIKLYVKRVFIMDDAEQL 327
+D+E PL H VEG+ E+ +L+IP RAP+DL++ + K+N IKLYV+RVFI D+AE L
Sbjct: 298 NDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDL 357
Query: 328 LPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKII 387
+P +L FVKGV+DS +LPLN+SRE+LQ+++ +KVIR+ K+++ +++ +++
Sbjct: 358 IPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQ---- 413
Query: 388 KYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNK 447
+ F+ F + IK G+ ED N+ ++KLLR+ ST + + SL DY+ RM E Q
Sbjct: 414 -FEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVD--ELTSLTDYVTRMPEHQKN 470
Query: 448 IYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLD 507
IYYITGE+ K+V+ SP L+ + K+ EVL LTD +DE+ + + +FE K LV I K D
Sbjct: 471 IYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITK---D 527
Query: 508 LGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSG 567
E + +K ++++ +++ L + +K+IL ++ + V V+Y+L D+PA + + S
Sbjct: 528 FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 587
Query: 568 NMIRMLKAAG------QETPNSKPILEINPNHALIQRIQ-------LNNDNIHNWSHILF 614
NM R++KA +SK EI+P +I+ ++ + + + + +L+
Sbjct: 588 NMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLY 647
Query: 615 DQALLAENGVLNDPMNFVKRLNEML 639
+ ALL L++P +F R+N ++
Sbjct: 648 ETALLTSGFSLDEPTSFASRINRLI 672
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 580 bits (1497), Expect = 0.0
Identities = 154/426 (36%), Positives = 256/426 (60%), Gaps = 22/426 (5%)
Query: 227 EKKETVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRN 286
S E LW R ++T E+Y FYK IS+D+E P H VEG+
Sbjct: 2 HHHHHHSSGRENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQL 61
Query: 287 EYIQLLYIPSRAPYDLWDRN-KRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLP 345
E+ ++++P RAP+D+++ N KRN IKLYV+RVFIMD+ E L P +L FVKGV+DS +LP
Sbjct: 62 EFRSIMFVPKRAPFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLP 121
Query: 346 LNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIG 405
LN+SRE LQ+++ +KVIR+ K+ L + ++++ +KE Y F+++FG+ IK GI
Sbjct: 122 LNISRENLQQNKILKVIRKNIVKKCLEMFDEVA--ENKED---YKQFYEQFGKNIKLGIH 176
Query: 406 EDNNNKERISKLLRFASTNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHL 465
ED N++++ +LLRF ST + + +L DY+ RMK GQ IYYITG++ K ++ SP +
Sbjct: 177 EDTANRKKLMELLRFYSTESGE--EMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFI 234
Query: 466 EIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETET 525
E +++ +EVL +T+ +DE+++ + FE+K+ + K + E+E +K+Q++E +
Sbjct: 235 EQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFE--ESEEEKQQREEEKA 292
Query: 526 KFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKA------AGQE 579
+ L + MK++L +K + V V+ RL+ SP LV E S +M ++++ + +
Sbjct: 293 ACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQ 352
Query: 580 TPNSKPILEINPNHALIQRIQL------NNDNIHNWSHILFDQALLAENGVLNDPMNFVK 633
SK +E+NP H +I+ ++ N+ + + +LFD +LL L DP + +
Sbjct: 353 YMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAE 412
Query: 634 RLNEML 639
R+N M+
Sbjct: 413 RINRMI 418
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 570 bits (1471), Expect = 0.0
Identities = 156/408 (38%), Positives = 251/408 (61%), Gaps = 24/408 (5%)
Query: 246 ALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD- 304
LW R S+IT E+Y FYK IS+D+E PL H VEG+ E+ +L+IP RAP+DL++
Sbjct: 3 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES 62
Query: 305 RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIRE 364
+ K+N IKLYV+RVFI D+AE L+P +L FVKGV+DS +LPLN+SRE+LQ+++ +KVIR+
Sbjct: 63 KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRK 122
Query: 365 GSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTN 424
K+++ ++ + D E ++ F+ F + IK G+ ED N+ ++KLLR+ ST
Sbjct: 123 NIVKKLIEAFNEI--AEDSE---QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTK 177
Query: 425 NDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDE 484
S + SL DY+ RM E Q IYYITGE+ K+V+ SP L+ + K+ EVL LTD +DE
Sbjct: 178 --SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDE 235
Query: 485 WMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKD 544
+ + + +FE K LV I K D E + +K ++++ +++ L + +K+IL ++ +
Sbjct: 236 YAFTQLKEFEGKTLVDITK---DFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEK 292
Query: 545 VRVTYRLTDSPACLVVDENEPSGNMIRMLKAAG------QETPNSKPILEINPNHALIQR 598
V V+Y+L D+PA + + S NM R++KA +SK EI+P +I+
Sbjct: 293 VVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKE 352
Query: 599 IQ-------LNNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEML 639
++ + + + + +L++ ALL L++P +F R+N ++
Sbjct: 353 LKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLI 400
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 568 bits (1466), Expect = 0.0
Identities = 167/409 (40%), Positives = 259/409 (63%), Gaps = 22/409 (5%)
Query: 244 ASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLW 303
+W R +IT+E+Y EFYK +++D+E L H VEG+ E+ LL++P RAP+DL+
Sbjct: 3 TKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLF 62
Query: 304 D-RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVI 362
+ R K+N IKLYV+RVFIMD+ E+L+P YL F++GV+DS +LPLN+SRE+LQ+S+ +KVI
Sbjct: 63 ENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVI 122
Query: 363 REGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFAS 422
R+ K+ L + +L+ DKE Y F+++F + IK GI ED+ N++++S+LLR+ +
Sbjct: 123 RKNLVKKCLELFTELA--EDKEN---YKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYT 177
Query: 423 TNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRV 482
+ S + VSL DY RMKE Q IYYITGE V NS +E +K +EV+ + + +
Sbjct: 178 SA--SGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPI 235
Query: 483 DEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKA 542
DE+ + + +FE K LVS+ K L+L E+E +KK+Q+E +TKF+NL + MK IL +K
Sbjct: 236 DEYCVQQLKEFEGKTLVSVTKEGLELP--EDEEEKKKQEEKKTKFENLCKIMKDILEKKV 293
Query: 543 KDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQET------PNSKPILEINPNHALI 596
+ V V+ RL SP C+V + NM R++KA +K LEINP+H++I
Sbjct: 294 EKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSII 353
Query: 597 QRIQL------NNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLNEML 639
+ ++ N+ ++ + +L++ ALL+ L DP R+ M+
Sbjct: 354 ETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMI 402
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 463 bits (1194), Expect = e-161
Identities = 160/308 (51%), Positives = 217/308 (70%), Gaps = 7/308 (2%)
Query: 244 ASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLW 303
A ALW R KSEITDE+Y EFYKHI+HDF PL ++HN VEG+ EY LLYIPS+AP+D+W
Sbjct: 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMW 61
Query: 304 DRNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIR 363
+R+ ++G+KLYV+RVFIMDDAEQ +P YLRFV+G+IDS++LPLNVSREILQ+S + +R
Sbjct: 62 NRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLR 121
Query: 364 EGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFAST 423
TKR+L +LE L+ +D E KY FW++FG V+KEG ED N+E I+KLLRFAST
Sbjct: 122 NALTKRVLQMLEKLAK-DDAE---KYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFAST 177
Query: 424 NNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVD 483
+ DS Q VSL DY+ RMKEGQ KIYYIT ++Y + K+SPHLE+ +KK IEVLLL+DR+D
Sbjct: 178 HTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237
Query: 484 EWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAK 543
EWM++++ +F+ K S++K + L L + + + + + A
Sbjct: 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLADGDLGTLVPRGSMA---ISDPNSSSVDKLAA 294
Query: 544 DVRVTYRL 551
+ +
Sbjct: 295 ALEHHHHH 302
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 443 bits (1143), Expect = e-154
Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 11/296 (3%)
Query: 246 ALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD- 304
LW R S+IT E+Y FYK IS+D+E PL H VEG+ E+ +L+IP RAP+DL++
Sbjct: 3 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES 62
Query: 305 RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIRE 364
+ K+N IKLYV+RVFI D+AE L+P +L FVKGV+DS +LPLN+SRE+LQ+++ +KVIR+
Sbjct: 63 KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRK 122
Query: 365 GSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTN 424
K+++ ++ + D E ++ F+ F + IK G+ ED N+ ++KLLR+ ST
Sbjct: 123 NIVKKLIEAFNEI--AEDSE---QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTK 177
Query: 425 NDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDE 484
S + SL DY+ RM E Q IYYITGE+ K+V+ SP L+ + K+ EVL LTD +DE
Sbjct: 178 --SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDE 235
Query: 485 WMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSE 540
+ + + +FE K LV I K D E + +K ++++ +++ L + +K+IL +
Sbjct: 236 YAFTQLKEFEGKTLVDITK---DFELEETDEEKAEREKEIKEYEPLTKALKEILGD 288
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 432 bits (1113), Expect = e-149
Identities = 117/268 (43%), Positives = 181/268 (67%), Gaps = 8/268 (2%)
Query: 243 QASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDL 302
+ +W R +IT E+Y EFYK +++D+E L H VEG+ E+ LL+IP RAP+DL
Sbjct: 2 KTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDL 61
Query: 303 WD-RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKV 361
++ + K+N IKLYV+RVFIMD ++L+P YL F++GV+DS +LPLN+SRE+LQ+S+ +KV
Sbjct: 62 FENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKV 121
Query: 362 IREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFA 421
IR+ K+ L + +L + DKE Y F++ F + +K GI ED+ N+ R+S+LLR+
Sbjct: 122 IRKNIVKKCLELFSEL--AEDKE---NYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYH 176
Query: 422 STNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDR 481
++ S + SL +Y+ RMKE Q IYYITGE+ + V NS +E +K+ EV+ +T+
Sbjct: 177 TSQ--SGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEP 234
Query: 482 VDEWMLSFIPKFENKELVSIAKGNLDLG 509
+DE+ + + +F+ K LVS+ K L+L
Sbjct: 235 IDEYCVQQLKEFDGKSLVSVTKEGLELA 262
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 421 bits (1085), Expect = e-145
Identities = 123/264 (46%), Positives = 177/264 (67%), Gaps = 9/264 (3%)
Query: 246 ALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD- 304
LW R S+IT E+Y FYK IS+D+E PL H VEG+ E+ +L+IP RAP+DL++
Sbjct: 5 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES 64
Query: 305 RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIRE 364
+ K+N IKLYV+RVFI D+AE L+P +L FVKGV+DS +LPLN+SRE+LQ+++ +KVIR+
Sbjct: 65 KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRK 124
Query: 365 GSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTN 424
K+++ ++ + D E ++ F+ F + IK G+ ED N+ ++KLLR+ ST
Sbjct: 125 NIVKKLIEAFNEI--AEDSE---QFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTK 179
Query: 425 NDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDE 484
S + SL DY+ RM E Q IYYITGE+ KSV+ SP L+ + K+ EVL LTD +DE
Sbjct: 180 --SVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDE 237
Query: 485 WMLSFIPKFENKELVSIAKGNLDL 508
+ + + +FE K LV I K +L
Sbjct: 238 YAFTQLKEFEGKTLVDITKD-FEL 260
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 413 bits (1065), Expect = e-142
Identities = 95/265 (35%), Positives = 155/265 (58%), Gaps = 11/265 (4%)
Query: 246 ALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWDR 305
+W + + +T+ Y FYK+ ++ PL Y H +VEG+ + +LYIP P++L
Sbjct: 5 PIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKN 64
Query: 306 N---KRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVI 362
+ GI+LYVKRVFI D + +P +L F++G++DS NLPLNV REILQ+S+ + +I
Sbjct: 65 MFDEESRGIRLYVKRVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSII 124
Query: 363 REGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFAS 422
+ + +++++ L + K+ F FG+ +K G+ ED N+E I+ L+ F S
Sbjct: 125 NKRIVLKSISMMKGLK-ETGGD---KWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYS 180
Query: 423 TNNDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRV 482
N S + L YI+ MKE Q IYYI+GEN K+ +NSP LE + + +VL + +
Sbjct: 181 IN--SGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPI 238
Query: 483 DEWMLSFIP--KFENKELVSIAKGN 505
DE+ LS + K++ E++ + K +
Sbjct: 239 DEFCLSSLTVNKYKGYEVLDVNKAD 263
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 386 bits (994), Expect = e-131
Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 24/285 (8%)
Query: 2 KNSEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELIN 61
+N + + ++ +Q EV ++ ++++SLY+ KE+FLRELISNA+DAL+K+RF ++
Sbjct: 12 ENLYFQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLS 71
Query: 62 NKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGD 121
++ + + LEI I+ +K+ ++I+D GIGM + D+I NLGTIAKSGT F +S
Sbjct: 72 DESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAIS-K 130
Query: 122 QKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTN- 180
D SLIGQFGVGFYSAF+VA K+IV +++ + E +WES FTI +
Sbjct: 131 SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD---EQYIWESTADAKFTIYKDPRGAT 187
Query: 181 --RGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEF 238
RGT I+L+L+ L+ KL +I KYS I FPI + E
Sbjct: 188 LKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHEN--------------- 232
Query: 239 EVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVE 283
+ L K + D Y + D K V+
Sbjct: 233 --VYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVK 275
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 367 bits (944), Expect = e-124
Identities = 123/216 (56%), Positives = 161/216 (74%)
Query: 7 ESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFIS 66
S +K ++T GFQ+EVK +L LMIHSLYSNKEIFLRELISNASDA DKLRF ++N +
Sbjct: 18 GSHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY 77
Query: 67 TDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDA 126
+ +L + ++FDKD RT+ ISDNG+GM R+++I +LGTIAKSGT+ F L DQ KD+
Sbjct: 78 EGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDS 137
Query: 127 SLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDIT 186
LIGQFGVGFYSAFIVA K+ V++R GV WES G G +T+ I K +RGT+IT
Sbjct: 138 QLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEIT 197
Query: 187 LYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKE 222
L+LR E+E+L W+++SII KYSDHI+ P+++ K
Sbjct: 198 LHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR 233
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 366 bits (943), Expect = e-124
Identities = 103/268 (38%), Positives = 155/268 (57%), Gaps = 10/268 (3%)
Query: 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNS 70
+K + FQAEV +++L+I+SLY NKEIFLRELISNASDALDK+R + ++ N
Sbjct: 3 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 62
Query: 71 DLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLS---GDQKKDAS 127
+L + I DK+ ++++D G+GM R +++ NLGTIAKSGT EF +K++ D + +
Sbjct: 63 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 122
Query: 128 LIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINK--TNRGTDI 185
LIGQFGVGFYSAF+VA K+IV S+H N +WES+ + I RGT I
Sbjct: 123 LIGQFGVGFYSAFLVADKVIVTSKHNND---TQHIWESDSNEFSVIADPRGNTLGRGTTI 179
Query: 186 TLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETW-DEEKKETVISNNEFEVINQA 244
TL L+ + +YL +K++++KYS I+FPI ++ E+ + E +
Sbjct: 180 TLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSD 239
Query: 245 SALWARGKSEITDEQYIEFYKHISHDFE 272
+ E + + K + D+E
Sbjct: 240 DEAAVEEEEEEKKPKTKKVEKTV-WDWE 266
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 351 bits (902), Expect = e-118
Identities = 100/237 (42%), Positives = 148/237 (62%), Gaps = 12/237 (5%)
Query: 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNS 70
+K + FQAEV +++L+I+SLY NKEIFLRELISNASDALDK+R + ++ N
Sbjct: 7 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 66
Query: 71 DLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLS---GDQKKDAS 127
+L + I DK+ ++++D G+GM R +++ NLGTIAKSGT EF +K++ D + +
Sbjct: 67 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 126
Query: 128 LIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINK--TNRGTDI 185
LIGQFGVGFYSAF+VA K+IV S+H N +WES+ + I RGT I
Sbjct: 127 LIGQFGVGFYSAFLVADKVIVTSKHNND---TQHIWESDSNEFSVIADPRGNTLGRGTTI 183
Query: 186 TLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVIN 242
TL L+ + +YL +K++++KYS I+FPI ++ K ++E++N
Sbjct: 184 TLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTV----WDWELMN 236
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 340 bits (875), Expect = e-114
Identities = 97/230 (42%), Positives = 143/230 (62%), Gaps = 7/230 (3%)
Query: 4 SEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNK 63
E ++ +T FQAE+ ++ L+I++ YSNKEIFLRELISNASDALDK+R+E + +
Sbjct: 7 EEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDP 66
Query: 64 FISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQK 123
+L+I I + RT+ + D GIGM + D+I NLGTIAKSGT+ F L
Sbjct: 67 SKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQA--G 124
Query: 124 KDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETI--NKTNR 181
D S+IGQFGVGFYSA++VA+K++V ++H + E WES G+FT+ R
Sbjct: 125 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDD---EQYAWESSAGGSFTVRADHGEPIGR 181
Query: 182 GTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKET 231
GT + L+L+ + EYL ++K +++K+S I +PI +Y E E+ +
Sbjct: 182 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKGEFN 231
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 338 bits (869), Expect = e-113
Identities = 91/222 (40%), Positives = 143/222 (64%), Gaps = 8/222 (3%)
Query: 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDL 72
+T FQAE+ ++ L+I+++YSNKEIFLRE++SNASDALDK+R++ +++ DL
Sbjct: 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDL 62
Query: 73 EIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQF 132
I IT + + + I D+GIGM + ++I NLGTIAKSGT+ F LS D S+IGQF
Sbjct: 63 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAG--ADVSMIGQF 120
Query: 133 GVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTI---ETINKTNRGTDITLYL 189
GVGFYS F+VA ++ V S+ + E +WES G+FT+ E + RGT + L+L
Sbjct: 121 GVGFYSLFLVADRVQVISKSNDD---EQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL 177
Query: 190 RSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKET 231
+ + EYL ++K +I+++S+ +++PI++ E++
Sbjct: 178 KDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPI 219
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 337 bits (866), Expect = e-112
Identities = 99/231 (42%), Positives = 149/231 (64%), Gaps = 11/231 (4%)
Query: 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNS 70
++ +T FQAE+ ++ L+I++ YSNKEIFLRELISN+SDALDK+R+E + +
Sbjct: 43 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGK 102
Query: 71 DLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIG 130
+L I + +K +RT+ I D GIGM + D+I NLGTIAKSGT+ F L D S+IG
Sbjct: 103 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQA--GADISMIG 160
Query: 131 QFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETI--NKTNRGTDITLY 188
QFGVGFYSA++VA+K+ V ++H + E WES G+FT+ T RGT + L+
Sbjct: 161 QFGVGFYSAYLVAEKVTVITKHNDD---EQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 217
Query: 189 LRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFE 239
L+ + EYL ++K I++K+S I +PI ++ E +++ +S++E E
Sbjct: 218 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE----VSDDEAE 264
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 335 bits (861), Expect = e-112
Identities = 99/231 (42%), Positives = 149/231 (64%), Gaps = 11/231 (4%)
Query: 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNS 70
++ +T FQAE+ ++ L+I++ YSNKEIFLRELISN+SDALDK+R+E + +
Sbjct: 7 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 66
Query: 71 DLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIG 130
+L I + +K +RT+ I D GIGM + D+I NLGTIAKSGT+ F L D S+IG
Sbjct: 67 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQA--GADISMIG 124
Query: 131 QFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETI--NKTNRGTDITLY 188
QFGVGFYSA++VA+K+ V ++H + E WES G+FT+ T RGT + L+
Sbjct: 125 QFGVGFYSAYLVAEKVTVITKHNDD---EQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 181
Query: 189 LRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFE 239
L+ + EYL ++K I++K+S I +PI ++ E +++ +S++E E
Sbjct: 182 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE----VSDDEAE 228
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 336 bits (863), Expect = e-112
Identities = 99/241 (41%), Positives = 151/241 (62%), Gaps = 11/241 (4%)
Query: 1 MKNSEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELI 60
+ + ++ +T FQAE+ ++ L+I++ YSNKEIFLRELISN+SDALDK+R+E +
Sbjct: 25 TQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 84
Query: 61 NNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSG 120
+ +L I + +K +RT+ I D GIGM + D+I NLGTIAKSGT+ F L
Sbjct: 85 TDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQA 144
Query: 121 DQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETI--NK 178
D S+IGQFGVGFYSA++VA+K+ V ++H + E WES G+FT+ T
Sbjct: 145 --GADISMIGQFGVGFYSAYLVAEKVTVITKHNDD---EQYAWESSAGGSFTVRTDTGEP 199
Query: 179 TNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEF 238
RGT + L+L+ + EYL ++K I++K+S I +PI ++ E +++ +S++E
Sbjct: 200 MGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE----VSDDEA 255
Query: 239 E 239
E
Sbjct: 256 E 256
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 285 bits (730), Expect = 4e-92
Identities = 95/256 (37%), Positives = 147/256 (57%), Gaps = 49/256 (19%)
Query: 11 KKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNK------- 63
+ F+AEV V+ ++++SLY++K++FLRELISNASDA DK R L NNK
Sbjct: 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEV 81
Query: 64 -----------------------------FISTDNSDLEIIITFDKDNRTINISDNGIGM 94
D L I I DK+ +T+ I+DNGIGM
Sbjct: 82 VTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGM 141
Query: 95 NRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVN 154
+++++I NLGTIA+SGT +F ++ + K D++LIGQFGVGFYS+F+V+ ++ V ++ +
Sbjct: 142 DKSELINNLGTIAQSGTAKFLKQIE-EGKADSNLIGQFGVGFYSSFLVSNRVEVYTKKED 200
Query: 155 SPITEGVLWESEGSGNFTIETINKTN--------RGTDITLYLRSKEEEYLSSWKLKSII 206
+ W S+ G+F++ I K + GT I L+L+ + +EYL +KLK +I
Sbjct: 201 ----QIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELI 256
Query: 207 RKYSDHISFPIKMYKE 222
+KYS+ I FPI+++ E
Sbjct: 257 KKYSEFIKFPIEIWSE 272
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 172 bits (439), Expect = 2e-51
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 519 QQKETETKFQNLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQ 578
+ + I+ +K +L E+ KDVR+T+RLTD+PA + D +E S M ++ AAGQ
Sbjct: 2 RGSHHHHHHGSFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ 61
Query: 579 ETPNSKPILEINPNHALIQRIQ--LNNDNIHNWSHILFDQALLAENGVLNDPMNFVKRLN 636
+ P K I E+NP+H L++R + W +L DQALLAE G L DP F++R+N
Sbjct: 62 KVPEVKYIFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMN 121
Query: 637 EMLL 640
++L+
Sbjct: 122 QLLV 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 2e-14
Identities = 77/498 (15%), Positives = 150/498 (30%), Gaps = 143/498 (28%)
Query: 4 SEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNK 63
+ PE++++ Q L +Q + HS + +LR L +
Sbjct: 193 NSPETVLEMLQKLLYQID-PNWTSRSDHS---------SNIKLRIHSIQAELRRLLKSKP 242
Query: 64 FIST----DN-SDLEIIITFDKDNRTI------NISDNGIGMNRNDIITN--LGTIAKSG 110
+ + N + + F+ + + ++D I + T+
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 111 TQEFFSKLSGDQKKD----ASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESE 166
+ K + +D + + I + W+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRL----SIIAESIRDGLAT-----------WD-- 345
Query: 167 GSGNFTIETINKTNRGTDITL-YLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWD 225
N+ +K + +L L + EY + S+ S HI P + W
Sbjct: 346 ---NWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPP-SAHI--PTILLSLIWF 397
Query: 226 EEKKETVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGR 285
+ K V+ V+N+ K + ++Q E I IY V+
Sbjct: 398 DVIKSDVM-----VVVNKLH------KYSLVEKQPKESTISI-PS-----IYLELKVKLE 440
Query: 286 NEY---IQLL--YIPSRAPYDLWDRNKRNGIKLYVKRVFI---MDDAEQ-----LLPT-Y 331
NEY ++ Y + +D D + Y I + + E L +
Sbjct: 441 NEYALHRSIVDHYNIPKT-FDSDDLIP-PYLDQYFYS-HIGHHLKNIEHPERMTLFRMVF 497
Query: 332 L--RFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKY 389
L RF++ I ++ N S GS ILN L+ L Y
Sbjct: 498 LDFRFLEQKIRHDSTAWNAS---------------GS---ILNTLQQL---------KFY 530
Query: 390 ANFWKEFGQVIKEGIGEDNNNKERISKLLRF---ASTN----NDSDIQNVSLMDYIKRMK 442
+ I + D + ++ +L F N +D+ ++LM
Sbjct: 531 KPY-------ICD---NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA------ 574
Query: 443 EGQNKIYYITGENYKSVK 460
+++ + E +K V+
Sbjct: 575 --EDEAIFE--EAHKQVQ 588
Score = 72.2 bits (176), Expect = 3e-13
Identities = 72/455 (15%), Positives = 146/455 (32%), Gaps = 112/455 (24%)
Query: 254 EITDEQYIEFYKHISHDFEKPLI--YTHNHVE-------GRNEYIQLLYIPSRAP----- 299
E + QY YK I FE + + V+ + E ++
Sbjct: 10 ETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 300 YDLWDRNKRNGIKLYVKRV------FIMD--DAEQLLPT-----YLRFVKGVIDSNNL-- 344
+ + ++ +V+ V F+M EQ P+ Y+ + + N +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 345 PLNVSR--------EILQESRDVKVIR----EGSTKRILNILEDLSTSNDKEKIIKYAN- 391
NVSR + L E R K + GS K + L + K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA----LDVCLSYKVQCKMDFK 183
Query: 392 -FWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYIK-RMKEGQNKI- 448
FW + + N+ + + L + + + IK R+ Q ++
Sbjct: 184 IFW------LN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 449 YYITGENYKS-------VKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSI 501
+ + Y++ V+N+ F ++LL T R + + F+ +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTT-R-FKQVTDFLSAATTTHISLD 292
Query: 502 AKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKI-------LSEKAKDVRVT---YRL 551
+ + +E K + + Q+L E+ ++E +D T ++
Sbjct: 293 ---HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 552 TDSPACLVVDENEPSGNMIRM-LKAAGQETPNSKPI---LEINPNHALIQRIQLNNDNIH 607
+ + +I L E + + L + P A I I L
Sbjct: 350 VN---------CDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAHIPTILL------ 392
Query: 608 NWSHILFDQALLAENGVLNDPMNFVKRLNEMLLIK 642
+L+ + + +D M V +L++ L++
Sbjct: 393 ---------SLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 59.5 bits (143), Expect = 3e-09
Identities = 91/674 (13%), Positives = 209/674 (31%), Gaps = 194/674 (28%)
Query: 34 YSNKEI---FLRELISN--ASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINIS 88
Y K+I F + N D D + +S + D II++ D + T+ +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPK------SILSKEEID-HIIMSKDAVSGTLRL- 67
Query: 89 DNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIV 148
L + + Q+F ++ + + Y F+++ +
Sbjct: 68 -----------FWTLLSKQEEMVQKFVEEV---LRIN-----------YK-FLMSP---I 98
Query: 149 KSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDI-TLYLRSKEEEYLSSWKLKSIIR 207
K+ P ++ IE ++ + Y S+ + Y KL+ +
Sbjct: 99 KTEQ-RQPSMMTRMY---------IEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALL 145
Query: 208 KYSDHISFPIKMY------KETW---DEEKKETVISNNEFEVINQASALWARGKSEITDE 258
+ + + + K TW D V +F++ W K+ + E
Sbjct: 146 ELRPAKN--VLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKI------FWLNLKNCNSPE 196
Query: 259 QYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDL-WDRNKRNGI---KLY 314
+E + + + + + S + + + + K Y
Sbjct: 197 TVLEMLQKLLYQIDPN-------------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 315 VKRVFIMDDAEQLLPTYLRFVKGVIDSNNL-PLNVSREILQESRDVKVIREGSTKRILNI 373
+ ++ + V ++ N+S +IL +R +V S +I
Sbjct: 244 ENCLLVLLN--------------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 374 -LEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNV 432
L+ S + +++ + + + + +
Sbjct: 290 SLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRR-------------L 330
Query: 433 SLMDYI-KRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTD-RVDEWMLSFI 490
S+ I + +++G +N+K V I + S+ VL + R LS
Sbjct: 331 SI---IAESIRDGLATW-----DNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVF 381
Query: 491 PKFEN--KELVSIAKGNLD-------LGNLENESD-KKQQKETETKFQNLIEEMKKILSE 540
P + L+S+ ++ + L S +KQ KE+ ++ E+K L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 541 KA---KDVRVTYRLT-----DSPACLVVD--------------ENEPSGNMIRM------ 572
+ + + Y + D +D E+ + RM
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 573 -----LKAAGQETPNSKPILEINPNHALIQRIQLNNDNIHNWSHILFDQALLAENGVLND 627
++ S IL +Q+++ I + + +++ ++N
Sbjct: 502 FLEQKIRHDSTAWNASGSILN------TLQQLKFYKPYICD-NDPKYER-------LVNA 547
Query: 628 PMNFVKRLNEMLLI 641
++F+ ++ E L+
Sbjct: 548 ILDFLPKIEENLIC 561
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 6e-09
Identities = 84/478 (17%), Positives = 144/478 (30%), Gaps = 183/478 (38%)
Query: 26 LQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNR-- 83
L+ LY + + +LI +++ L +L ++ + + T ++ + + N
Sbjct: 173 LR----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPD 227
Query: 84 -----TINISDNGIGMNRNDIITNLG----TIAKSG--TQEFFSKLSGDQKKDASLIGQF 132
+I IS IG + L T G E S L G A+ Q
Sbjct: 228 KDYLLSIPISCPLIG------VIQLAHYVVTAKLLGFTPGELRSYLKG-----ATGHSQ- 275
Query: 133 GVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLY---- 188
G +A +A+ S WES F ++ K IT+
Sbjct: 276 --GLVTAVAIAE---TDS------------WES-----F-FVSVRKA-----ITVLFFIG 307
Query: 189 LRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVINQASA-L 247
+R E Y + S P + +++ + NNE S L
Sbjct: 308 VRCYEA--------------YP-NTSLPPSILEDSLE---------NNE----GVPSPML 339
Query: 248 WARGKSEITDEQYIE-------FYKHISHDFEKPLIYTHNHVEGRNEYI-----QLLY-- 293
++ + Y+ K + I N G + Q LY
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVE-------ISLVN---GAKNLVVSGPPQSLYGL 389
Query: 294 --------IP-----SRAPYDLWDRNKRNGIKLYVKRVF----------IMDDAEQLLPT 330
P SR P+ +R KL F ++ A L+
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFS-----ER---KLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 331 YLRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYA 390
L ++ ++ + V ++ D +R S +I E + + II+
Sbjct: 442 DLVKNNVSFNAKDIQIPV-----YDTFDGSDLRVLSG----SISERIV-----DCIIRLP 487
Query: 391 NFWKE-----------FGQVIKEGIGE-DNNNKE----RISKLLRFAST---NNDSDI 429
W+ FG G+G + NK+ R+ A T N D D
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI----VAGTLDINPDDDY 541
Score = 57.8 bits (139), Expect = 9e-09
Identities = 79/460 (17%), Positives = 140/460 (30%), Gaps = 188/460 (40%)
Query: 273 KPLIYTHNHVEGRNEYIQLLYIPSRAPY----DLWDRNKRNGIKLYVKRV------FIMD 322
+PL +H +E LL +P+ A + L ++ + K + F D
Sbjct: 7 RPLTLSHGSLE-----HVLL-VPT-ASFFIASQLQEQ--------FNKILPEPTEGFAAD 51
Query: 323 D-----AEQLLPTYLRFVKGVIDSNNLP--LNVSREILQE-------SRDVKVIREGSTK 368
D AE L+ +L +V +++ + + V L E D+ +
Sbjct: 52 DEPTTPAE-LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL------ 104
Query: 369 RILNILEDLSTSNDKEK-IIK-Y--ANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTN 424
+L++ T+ K K +IK Y A + + +K+ S L R A
Sbjct: 105 -AAKLLQENDTTLVKTKELIKNYITARI-----------MAKRPFDKKSNSALFR-AVGE 151
Query: 425 NDSDI------Q-NVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVL- 476
++ + Q N DY + +++ +Y + Y + K S E L
Sbjct: 152 GNAQLVAIFGGQGNTD--DYFEELRD----LY----QTYH-----VLVGDLIKFSAETLS 196
Query: 477 -LLTDRVD------------EWM-----------LSFIP--------------------- 491
L+ +D EW+ L IP
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 492 KFENKELVSIAKGNLDLGNLEN--------ESDKKQQKETETKFQNLIEEMKKIL----- 538
F EL S KG G+ + E+D + F + + +L
Sbjct: 257 GFTPGELRSYLKGA--TGHSQGLVTAVAIAETD------SWESFFVSVRKAITVLFFIGV 308
Query: 539 -SEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQETPNSKPILEIN--PNHAL 595
+A Y T P ++ D E + P+ P+L I+ +
Sbjct: 309 RCYEA------YPNTSLPPSILEDSLE-----------NNEGVPS--PMLSISNLTQEQV 349
Query: 596 IQRIQLNNDNIHNWSHI---LFDQALLAENGVLNDPMNFV 632
+ N ++ + L NG N V
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLV-------NG----AKNLV 378
Score = 57.0 bits (137), Expect = 2e-08
Identities = 53/359 (14%), Positives = 109/359 (30%), Gaps = 125/359 (34%)
Query: 120 GDQKKDASLIGQFGVG--FYSAFIVAKKIIVKSRHVNSPITEGVLWE------SEGSGNF 171
G Q++ G+G Y A+ + W + G F
Sbjct: 1625 GSQEQ--------GMGMDLYKTSKAAQDV----------------WNRADNHFKDTYG-F 1659
Query: 172 TIETINKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKET 231
+I I N ++T++ + K K I YS +++ D + K
Sbjct: 1660 SILDIVINN-PVNLTIHFGGE--------KGKRIRENYSAM------IFETIVDGKLKTE 1704
Query: 232 VISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKP---LIYTHNHVEGRNEY 288
I F+ IN+ S + T F L T ++
Sbjct: 1705 KI----FKEINEHS-------TSYT--------------FRSEKGLLSAT--------QF 1731
Query: 289 IQ--LLYIPSRAPYDLWDRNKRNGIK----------L--Y-----VKRVFIMDDAEQLLP 329
Q L + +A ++ K G+ L Y + V ++ +++
Sbjct: 1732 TQPALTLM-EKAAFEDL---KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV- 1786
Query: 330 TYLRFVKGVIDSNNLP---LNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKI 386
+ R G+ +P L S + +V S + + ++E + +
Sbjct: 1787 -FYR---GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV--GKRTGWL 1840
Query: 387 IKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMD--YIKRMKE 443
++ N+ E Q + D + ++ +L F I + L ++ ++
Sbjct: 1841 VEIVNYNVENQQYV---AAGDLRALDTVTNVLNFIKLQK---IDIIELQKSLSLEEVEG 1893
Score = 50.0 bits (119), Expect = 2e-06
Identities = 105/649 (16%), Positives = 202/649 (31%), Gaps = 226/649 (34%)
Query: 15 TLGFQAEVKP--VLQLMIHSLYSNKEIFLRELI--SNASDALDKLRFELINNKFIST--D 68
T GF A+ +P +L+ L ++ L+ S L L +F + +
Sbjct: 45 TEGFAADDEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCL--TEFENCYLE 97
Query: 69 NSDL-EIIITFDKDNRTINISDNGIGMNRNDIITN----LGTIAKSGTQEFFSKL-SGDQ 122
+D+ + ++N T + ++I N + ++ S L
Sbjct: 98 GNDIHALAAKLLQENDTTLVK-------TKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 123 KKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRG 182
+ +A L+ FG G GN +
Sbjct: 151 EGNAQLVAIFG---------------------------------GQGN--TDD------- 168
Query: 183 TDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEF-EVI 241
Y EE L+ + + Y + IK ET E + T+ + F + +
Sbjct: 169 -----YF---EE-------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 242 NQASALWARGKSEITDEQYIEFYKHISHDFEKPLI----YTHNHVEGRNEYIQLLYIPSR 297
N W S D+ Y+ IS PLI H Y+ +
Sbjct: 214 NILE--WLENPSNTPDKDYLLSIP-IS--C--PLIGVIQLAH--------YVVTAKLLGF 258
Query: 298 APYDLWDRNKRNGIKLYVKRV----FI--MDDAEQLLPTYLRFVK-----GVIDSNNLP- 345
P +L K G + + + I D E + + + GV P
Sbjct: 259 TPGELRSYLK--GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 346 LNVSREILQESRDVKVIREGSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIG 405
++ IL++S + EG +L+I +L+ +E++ Y +
Sbjct: 317 TSLPPSILEDSLEN---NEGVPSPMLSI-SNLT----QEQVQDY--------------VN 354
Query: 406 EDNNNKERISKLLRFASTNNDSDIQNVS--------LMDYIKRMK----EGQNKIYYITG 453
+ N++ ++ S N + VS L +++ K Q++I
Sbjct: 355 KTNSHLPAGKQV--EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI----- 407
Query: 454 ENYKSVKNSPHLEIFQKK---SIEVL---------LL---TDRVDEWMLSFIPKFENKEL 498
P ++K S L LL +D +++ ++ F K++
Sbjct: 408 ---------PFS---ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 499 ---V-SIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILS-----EKAKDVRVTY 549
V G+ DL + + + + +++ I+ E + T+
Sbjct: 456 QIPVYDTFDGS-DL-----------RVLSGSISERIVDC---IIRLPVKWETTTQFKATH 500
Query: 550 RLTDSP------ACLVVDENEPSGNMIRMLKAAGQETPNSKPILEINPN 592
L P L + +G +R++ A L+INP+
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTG--VRVIVAGT---------LDINPD 538
Score = 41.6 bits (97), Expect = 9e-04
Identities = 54/304 (17%), Positives = 94/304 (30%), Gaps = 92/304 (30%)
Query: 292 LYIPSRAPYDLWDRNKRNGIKLYVKRVF-IMDDAEQLLPTYLRFVKGVIDSNNLPLNVSR 350
LY S+A D+W+R + Y + I+ + P L G + N S
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN----PVNLTIHFGGEKGKRIRENYSA 1690
Query: 351 EILQESRDVKVIREGSTKRILNILEDLSTSNDKEKI------------IKYANF--WKEF 396
I + D K+ E K I + ++K + ++ A F K
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 397 GQVIKE----G--IGEDNNNKERISKL------LRFASTNNDSDIQNVSL--------MD 436
G + + G +GE + L + S V +
Sbjct: 1751 GLIPADATFAGHSLGE-------YAALASLADVMSIESL--------VEVVFYRGMTMQV 1795
Query: 437 YIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENK 496
+ R + G++ Y + N V S E Q + +RV +
Sbjct: 1796 AVPRDELGRSN-YGMIAINPGRVAASFSQEALQY-------VVERVGK---------RTG 1838
Query: 497 ELVSIAKGNLDLGNLENESDKKQQ----KETETKFQNLIEEMKKILSE-KAKDVRVTYRL 551
LV I N N+EN QQ + ++ + +L+ K + + + L
Sbjct: 1839 WLVEIV--NY---NVEN-----QQYVAAGDLRA-----LDTVTNVLNFIKLQKIDII-EL 1882
Query: 552 TDSP 555
S
Sbjct: 1883 QKSL 1886
Score = 30.0 bits (67), Expect = 2.8
Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 50/132 (37%)
Query: 539 SEKAKDV--------RVTYRLT------DSPACLVVDENEPSGNMIR------MLKAAGQ 578
S+ A+DV + TY + ++P L + G IR + +
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 579 ETPNSKPIL-EINPNHALIQRIQLNNDNIHNWSH---IL----FDQ-ALLA--------- 620
++ I EIN + + +L F Q AL
Sbjct: 1699 GKLKTEKIFKEINEHSTSY-----------TFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 621 -ENGVLNDPMNF 631
G++ F
Sbjct: 1748 KSKGLIPADATF 1759
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 46.7 bits (110), Expect = 2e-05
Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 36/245 (14%)
Query: 2 KNSEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELIN 61
S E + + GF + + Q +RELI N+ DA D
Sbjct: 9 SLSPAEFFKRNPELAGFPNPARALYQT------------VRELIENSLDATDVHGILPNI 56
Query: 62 NKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGD 121
I + +I +N+ DNGIG+ ++ G + L
Sbjct: 57 KITIDLIDDARQIY--------KVNVVDNGIGIPPQEVPNAFGRV-----------LYSS 97
Query: 122 QKKDASLIGQFGVGFYSAFIVA-----KKIIVKSRHVNSPITEGVLWESEGSGNFTIETI 176
+ + G +G+G +A + + K I +++ VNS + + + N I
Sbjct: 98 KYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVE 157
Query: 177 NKTNRGTDITLYLRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNN 236
+ T K KS I +Y + + + +
Sbjct: 158 RGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPR 217
Query: 237 EFEVI 241
I
Sbjct: 218 LTNKI 222
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 40.1 bits (93), Expect = 0.002
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 40/205 (19%)
Query: 2 KNSEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELIN 61
S E + + GF + + Q +RELI N+ DA D
Sbjct: 10 SLSPAEFFKRNPELAGFPNPARALYQT------------VRELIENSLDATDVHGILPNI 57
Query: 62 NKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGD 121
I + +I +N+ DNGIG+ ++ F L
Sbjct: 58 KITIDLIDDARQIY--------KVNVVDNGIGIPPQEV-----------PNAFGRVLYSS 98
Query: 122 QKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNR 181
+ + G +G+G + + H + PI + S + K +
Sbjct: 99 KYVNRQTRGMYGLG---VKAA--VLYSQM-HQDKPIE---IETSPVNSKRIYTFKLKIDI 149
Query: 182 GTDITLYLRSKEEEYLSSWKLKSII 206
+ + + E + S+
Sbjct: 150 NKNEPIIVERGSVENTRGFHGTSVA 174
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 35.1 bits (80), Expect = 0.059
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L EL N+ +R + + ++ ++T K++ +I ISD G G+ I
Sbjct: 258 LFELFKNS------MRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI 310
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 34.2 bits (78), Expect = 0.12
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L EL+ NA A + ++ + D+ I I + + I ISD G G+ D+
Sbjct: 243 LPELLKNAMRATME------SHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDL 295
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer
of translation terminatio translation; HET: CME; 2.15A
{Schizosaccharomyces pombe} PDB: 3qtn_B
Length = 346
Score = 33.0 bits (74), Expect = 0.25
Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 7/218 (3%)
Query: 332 LRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLST-SNDKEKIIKYA 390
L + + V R +ES + + I ++ L + D +
Sbjct: 121 LFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEYFDAL 180
Query: 391 NFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNV----SLMDYIKRMKEGQN 446
I ++ + LL S +++V + Y +E
Sbjct: 181 TPDSLRPLYILSSYLFQFGDQFSEAFLLDVCSIITALWLKSVVDPNTPAYYKLIAQEAVL 240
Query: 447 KIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNL 506
Y E Y + ++ + + L + VD W + + + L+ +A +
Sbjct: 241 NNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVIYTLDKSPERLLKLADIKM 300
Query: 507 DLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKD 544
DL + + Q + N I+E + E + D
Sbjct: 301 DLAQIVQDEAS--QDNYLKEACNAIKEAQGSGVELSPD 336
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.29
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 568 NMIRMLKAAGQE-TPNSKPILEINPNHALIQ 597
++ L+A+ + +S P L I A ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK---ATME 47
Score = 29.9 bits (66), Expect = 1.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 193 EEEYLSSWKLKSIIRKYSDHISFP---IKMYKE 222
E++ L KL++ ++ Y+D S P IK E
Sbjct: 18 EKQALK--KLQASLKLYADD-SAPALAIKATME 47
Score = 29.1 bits (64), Expect = 2.4
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 9/29 (31%)
Query: 272 EKPLIYTHNHVEGRNEYIQL-LYIPSRAP 299
EK + ++ L LY AP
Sbjct: 18 EKQAL---KKLQAS-----LKLYADDSAP 38
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein
binding; 2.18A {Schizosaccharomyces pombe}
Length = 393
Score = 32.7 bits (73), Expect = 0.33
Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 7/218 (3%)
Query: 332 LRFVKGVIDSNNLPLNVSREILQESRDVKVIREGSTKRILNILEDLST-SNDKEKIIKYA 390
L + + V R +ES + + I ++ L + D +
Sbjct: 168 LFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEYFDAL 227
Query: 391 NFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNV----SLMDYIKRMKEGQN 446
I ++ + LL S +++V + Y +E
Sbjct: 228 TPDSLRPLYILSSYLFQFGDQFSEAFLLDVCSIITALWLKSVVDPNTPAYYKLIAQEAVL 287
Query: 447 KIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVSIAKGNL 506
Y E Y + ++ + + L + VD W + + + L+ +A +
Sbjct: 288 NNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVIYTLDKSPERLLKLADIKM 347
Query: 507 DLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKD 544
DL + + Q + N I+E + E + D
Sbjct: 348 DLAQIVQDEAS--QDNYLKEACNAIKEAQGSGVELSPD 383
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 31.7 bits (71), Expect = 0.73
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
+ EL NA +R + + +++ +T ++ T+ +SD G G+ I
Sbjct: 248 VFELFKNA------MRA-TMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKI 299
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 30.5 bits (68), Expect = 1.7
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L EL NA +R + + S +++++ +++ +I +SD G G+ I
Sbjct: 236 LFELFKNA------MRA-TVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKI 287
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 30.5 bits (68), Expect = 1.8
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%)
Query: 4 SEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNK 63
S E K +Q LGF + + ++ ++E + NA DA ++
Sbjct: 17 SVAEFFEKNRQILGFDSAPRSLITT------------VKEAVDNALDACEE--------- 55
Query: 64 FISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQK 123
L + D T+ I DNG G+ R I + F L G +
Sbjct: 56 -AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQI-----------PKVFAKLLYGSRF 103
Query: 124 KDAS-LIGQFGVG-----FYSAFIVAKKIIVKSRHVNS 155
GQ G+G Y+ + + S+ +
Sbjct: 104 HALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPT 141
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 29.3 bits (66), Expect = 2.6
Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 112 QEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHV-------NSPITEGVLWE 164
++ +++ K+ + + F G + +V K IV ++H+ + ++ +
Sbjct: 1 EKNVKEITDATKEPYNSVVAFVGG--TGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSK 58
Query: 165 SEGSGNFTIETINKTNRGTDI-TLYLRSKEEEYLSSWKLKSIIRKYSDHIS 214
+G GN+ ++ I + D+ +++ E L+ K S K++D
Sbjct: 59 GKGGGNYDVKDIVEYPGKEDLAIVHVHETSTEGLNFNKNVSYT-KFADGAK 108
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 29.9 bits (67), Expect = 3.2
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 379 TSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTNNDSDIQNVSLMDYI 438
S D + ++NF K IK + + N+ + D ++ S +
Sbjct: 449 VSKDPQSANWWSNFPKYSASYIKSMWPDADLNEA-------YGYLPKGEDGKDYSWLTLF 501
Query: 439 KRMKEGQNKIYYITGEN 455
M +G+ K ++ G+N
Sbjct: 502 DDMFQGKIKGFFAWGQN 518
>3pub_A 30KDA protein; beta-trefoil fold, haemolymph, unknown function;
1.91A {Bombyx mori}
Length = 251
Score = 28.9 bits (64), Expect = 4.3
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 205 IIRKYSDHISFPIKMYKETWDEEKKETV---ISNNEFEVINQASALWARGKSEITDEQYI 261
++ Y + +Y+E E V I NN+ + A LW +G +I + +
Sbjct: 20 VVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFP 79
Query: 262 EFYKHISHDFEKPLIYTHNHV 282
++ I + L+Y + +
Sbjct: 80 VEFRLIFAENAIKLMYKRDGL 100
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
sporulation, serine kinase, transcription; HET: ADP;
2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3
PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Length = 145
Score = 27.7 bits (62), Expect = 6.3
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDII 100
+ E ++NA I + + + N + I + + + + D G+G+ +
Sbjct: 44 VSEAVTNA-----------IIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEA 92
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
structural genomics, NPPSFA, NATI project on protein
structural and functional analyses; HET: ANP; 1.86A
{Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Length = 394
Score = 28.6 bits (63), Expect = 6.4
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L EL NA A + + + I E+I+ K++ TI ISD G G+ I
Sbjct: 235 LFELFKNAMRATVEHQENQPSLTPI-------EVIVVLGKEDLTIKISDRGGGVPLRII 286
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two
component system, transfera; 1.60A {Escherichia coli}
SCOP: d.122.1.3
Length = 160
Score = 27.5 bits (62), Expect = 7.9
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 44 LISNASDALDKLRFELINNKFIST-DNSDLEIIITFDKDNRTINISDNGIGM 94
++ NA AL E+I + T L + + I++ DNG G+
Sbjct: 56 IVRNALQALGPEGGEII----LRTRTAFQLTLHGERYRLAARIDVEDNGPGI 103
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 27.9 bits (63), Expect = 9.9
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 53 DKLRFE-----LINN--KFISTDNSDLEIIITFDKDNRTINIS--DNGIGMNRNDI 99
D R L+NN K+ D D + + D+ + + I DNGIG+ +
Sbjct: 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.373
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,486,906
Number of extensions: 582549
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1022
Number of HSP's successfully gapped: 77
Length of query: 642
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 542
Effective length of database: 3,909,693
Effective search space: 2119053606
Effective search space used: 2119053606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.7 bits)