RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2391
(642 letters)
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 268 bits (686), Expect = 2e-86
Identities = 118/259 (45%), Positives = 174/259 (67%), Gaps = 8/259 (3%)
Query: 246 ALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYIQLLYIPSRAPYDLWD- 304
LW R S+IT E+Y FYK IS+D+E PL H VEG+ E+ +L+IP RAP+DL++
Sbjct: 4 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES 63
Query: 305 RNKRNGIKLYVKRVFIMDDAEQLLPTYLRFVKGVIDSNNLPLNVSREILQESRDVKVIRE 364
+ K+N IKLYV+RVFI D+AE L+P +L FVKGV+DS +LPLN+SRE+LQ+++ +KVIR+
Sbjct: 64 KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRK 123
Query: 365 GSTKRILNILEDLSTSNDKEKIIKYANFWKEFGQVIKEGIGEDNNNKERISKLLRFASTN 424
K+++ +++ +++ + F+ F + IK G+ ED N+ ++KLLR+ +
Sbjct: 124 NIVKKLIEAFNEIAEDSEQ-----FEKFYSAFSKNIKLGVHEDTQNRAALAKLLRY--NS 176
Query: 425 NDSDIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDRVDE 484
S + SL DY+ RM E Q IYYITGE+ KSV+ SP L+ + K+ EVL LTD +DE
Sbjct: 177 TKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDE 236
Query: 485 WMLSFIPKFENKELVSIAK 503
+ + + +FE K LV I K
Sbjct: 237 YAFTQLKEFEGKTLVDITK 255
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 202 bits (515), Expect = 1e-61
Identities = 96/234 (41%), Positives = 142/234 (60%), Gaps = 12/234 (5%)
Query: 14 QTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLE 73
+ FQAEV +++L+I+SLY NKEIFLRELISNASDALDK+R + ++ N +L
Sbjct: 1 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELT 60
Query: 74 IIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQ---KKDASLIG 130
+ I DK+ ++++D G+GM R +++ NLGTIAKSGT EF +K++ Q + + LIG
Sbjct: 61 VKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIG 120
Query: 131 QFGVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNF--TIETINKTNRGTDITLY 188
QFGVGFYSAF+VA K+IV +WES+ + N RGT ITL
Sbjct: 121 QFGVGFYSAFLVADKVIV---TSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 177
Query: 189 LRSKEEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDEEKKETVISNNEFEVIN 242
L+ + +YL +K++++KYS I+FPI ++ K ++E++N
Sbjct: 178 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVW----DWELMN 227
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 194 bits (494), Expect = 8e-59
Identities = 85/214 (39%), Positives = 130/214 (60%), Gaps = 2/214 (0%)
Query: 13 KQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDL 72
+T FQAE+ ++ L+I+++YSNKEIFLRELISNASDALDK+R++ +++ DL
Sbjct: 2 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDL 61
Query: 73 EIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQF 132
I IT + + + I D+GIGM + ++I NLGTIAKSGT+ F L D S+IGQF
Sbjct: 62 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEAL--SAGADVSMIGQF 119
Query: 133 GVGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRSK 192
GVGFYS F+VA ++ V S+ + E + RGT + L+L+
Sbjct: 120 GVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDD 179
Query: 193 EEEYLSSWKLKSIIRKYSDHISFPIKMYKETWDE 226
+ EYL ++K +I+++S+ +++PI++ E
Sbjct: 180 QLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 213
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 189 bits (482), Expect = 4e-57
Identities = 91/209 (43%), Positives = 133/209 (63%), Gaps = 3/209 (1%)
Query: 14 QTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNKFISTDNSDLE 73
+T FQAE+ ++ L+I++ YSNKEIFLRELISN+SDALDK+R+E + + +L
Sbjct: 2 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELH 61
Query: 74 IIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFG 133
I + +K +RT+ I D GIGM + D+I NLGTIAKSGT+ F L D S+IGQFG
Sbjct: 62 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL--QAGADISMIGQFG 119
Query: 134 VGFYSAFIVAKKIIVKSRHVNSPITEGVLWESEGSGNFTIETINKTNRGTDITLYLRSKE 193
VGFYSA++VA+K+ V ++H + + GS +T RGT + L+L+ +
Sbjct: 120 VGFYSAYLVAEKVTVITKHNDDE-QYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQ 178
Query: 194 EEYLSSWKLKSIIRKYSDHISFPIKMYKE 222
EYL ++K I++K+S I +PI ++ E
Sbjct: 179 TEYLEERRIKEIVKKHSQFIGYPITLFVE 207
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 123 bits (311), Expect = 4e-34
Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 529 NLIEEMKKILSEKAKDVRVTYRLTDSPACLVVDENEPSGNMIRMLKAAGQETPNSKPILE 588
+ I+ +K +L E+ KDVR+T+RLTD+PA + D +E S M ++ AAGQ+ P K I E
Sbjct: 1 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKYIFE 60
Query: 589 INPNHALIQRIQLNNDNIH--NWSHILFDQALLAENGVLNDPMNFVKRLNEMLL 640
+NP+H L++R D W +L DQALLAE G L DP F++R+N++L+
Sbjct: 61 LNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 114
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 35.2 bits (80), Expect = 0.017
Identities = 36/219 (16%), Positives = 68/219 (31%), Gaps = 33/219 (15%)
Query: 4 SEPESIIKKKQTLGFQAEVKPVLQLMIHSLYSNKEIFLRELISNASDALDKLRFELINNK 63
S E + + GF + + Q +RELI N+ DA D
Sbjct: 2 SPAEFFKRNPELAGFPNPARALYQT------------VRELIENSLDATDVHGILPNIKI 49
Query: 64 FISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDIITNLGTIAKSGTQEFFSKLSGDQK 123
I + +I +N+ DNGIG+ ++ G + SK Q
Sbjct: 50 TIDLIDDARQIYK--------VNVVDNGIGIPPQEVPNAFGRVLY------SSKYVNRQT 95
Query: 124 KDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSP----ITEGVLWESEGSGNFTIETINKT 179
+ +G YS K I +++ VNS + ++ T
Sbjct: 96 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENT 155
Query: 180 NRGTDITLYLRSKEEEYLSSWKLKSIIRKYS---DHISF 215
++ + + + ++ I++ + F
Sbjct: 156 RGFHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYAEF 194
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH)
{Thermus thermophilus [TaxId: 274]}
Length = 172
Score = 28.7 bits (63), Expect = 1.4
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 230 ETVISNNEFEVINQASALWARGKSEITDEQYIEFYKHISHDFEKPLIYTHNHVEGRNEYI 289
E V++N +FE S W ++ I + + ++ S K + G E +
Sbjct: 12 ERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGV 71
Query: 290 QLLYIPSRAPYDLW 303
+ + + P L+
Sbjct: 72 DAVIVATNTPDALF 85
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 236
Score = 28.6 bits (62), Expect = 2.3
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 12/54 (22%)
Query: 523 TETKFQNLIEEMKKILSEK------------AKDVRVTYRLTDSPACLVVDENE 564
T+ +F +++ + +L + K + +P+ V
Sbjct: 8 TQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTV 61
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 28.1 bits (62), Expect = 2.8
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L EL NA A + + S ++I++ +++ +I +SD G G+ I
Sbjct: 65 LFELFKNAMRATVE-------SHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI 116
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 266
Score = 28.0 bits (62), Expect = 3.2
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 24/151 (15%)
Query: 266 HISHDFEKPLIYTHNHVEGRNEYIQL-------LYIPSRAPYDLWDR---NKRNGIKLYV 315
+ + I T H E++ ++ D W K G+ L
Sbjct: 68 LFAKKYGVKPIGTVAH-----EWVMGVASISEDYLHANKNAMDCWINTFGAKNAGLALTD 122
Query: 316 KRVFIMDDAEQLLPTYLRFVKGV-IDSNNLPLNVSREILQESRDVKVIREGSTKRILNIL 374
D + P Y GV DS + P+ +++I D + +K I
Sbjct: 123 T-FGTDDFLKSFRPPYSDAYVGVRQDSGD-PVEYTKKISHHYHD-VLKLPKFSKIIC--- 176
Query: 375 EDLSTSNDKEKIIKYANFWKEFGQVIKEGIG 405
S S + EK I Y++ KE G + GIG
Sbjct: 177 --YSDSLNVEKAITYSHAAKENGMLATFGIG 205
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 27.9 bits (61), Expect = 3.3
Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDII 100
++EL+ N+ DA +++++ + D I +SDNG G+ +
Sbjct: 11 VKELVENSLDA----------------GATNIDLKLK-DYGVDLIEVSDNGCGVEEENFE 53
Query: 101 TNLGTIAKSGTQEFFSKLSGDQKKDASLIGQFGVGFYSAFIVAKKIIVKSRHVNSPITEG 160
S QEF + G G S ++ + + + H ++ +
Sbjct: 54 GLTLKHHTSKIQEFADLTQVET------FGFRGEALSSLCALS-DVTISTCHASAKVGTR 106
Query: 161 VLWESEG 167
++++ G
Sbjct: 107 LMFDHNG 113
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 27.1 bits (60), Expect = 3.9
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 59 LINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
I N + +++ + I I DNG G+ +
Sbjct: 52 AIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGER 92
>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x
(pbp-2x), c-terminal domain {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 61
Score = 25.2 bits (55), Expect = 5.4
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 428 DIQNVSLMDYIKRMKEGQNKIYYITGENYKSVKNSPHLEIFQKKSIEVLLLTDR 481
++++S D + ++ + G K +S + +VL+L+D+
Sbjct: 9 SVKDISPGDLAEELRR-NLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDK 61
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 26.5 bits (57), Expect = 6.4
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L EL N+ A + ++ ++T K++ +I ISD G G+ I
Sbjct: 69 LFELFKNSMRATV------ELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI 121
>d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 525
Score = 27.4 bits (59), Expect = 6.5
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 443 EGQNKIYYITGENYKSVKNSPHL--EIFQKKSIEVLLLTDRVDEWMLSFIPKFENKELVS 500
G++ + +++GE + + E+F ++I R +W ++P
Sbjct: 434 RGRSWLGWLSGETEAAHDENTVTGWELFGMRAI-------RQGDWKAVYLPAPVGP---- 482
Query: 501 IAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKKILSEKAKDVRV 547
L +L D + + + E+ + + V
Sbjct: 483 ---ATWQLYDLAR--DPGEIHDLADSQPGKLAELIEHWKRYVSETGV 524
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 26.4 bits (58), Expect = 7.7
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 41 LRELISNASDALDKLRFELINNKFISTDNSDLEIIITFDKDNRTINISDNGIGMNRNDI 99
L L++N K + + + + II+ DNGIG+ +
Sbjct: 54 LLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIV-----------EDNGIGIPDHAK 101
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 26.0 bits (57), Expect = 9.4
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 483 DEWMLSFIPKFENKELVSIAKGNLDLGNLENESDKKQQKETETKFQNLIEEMKK 536
D+ S I KFEN L + + L + +D K +E++ K + ++
Sbjct: 75 DKLEPSKITKFENAFLSHVISQHQALLG-KIRTDGKISEESDAKLKEIVTNFLA 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.373
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,339,906
Number of extensions: 114740
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 35
Length of query: 642
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 551
Effective length of database: 1,158,166
Effective search space: 638149466
Effective search space used: 638149466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)