BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2392
(1165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/437 (61%), Positives = 353/437 (80%), Gaps = 6/437 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 128 EERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 185
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 186 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 245
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 246 AVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 305 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S + +DADY
Sbjct: 365 NIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V+ L L +EDLSR+
Sbjct: 425 VSKHLDALVADEDLSRF 441
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/386 (63%), Positives = 313/386 (81%), Gaps = 3/386 (0%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 953
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 128 EERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 185
Query: 954 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 1013
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 186 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 245
Query: 1014 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 1073
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 246 AVEQHGIVFIDEIDKICKR-GESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 304
Query: 1074 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 1133
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 305 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 364
Query: 1134 KIEFVDDGIQRLAEIAYCINERTENI 1159
IEF D GI+R+AE A+ +NE TENI
Sbjct: 365 NIEFTDSGIKRIAEAAWQVNESTENI 390
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/437 (61%), Positives = 353/437 (80%), Gaps = 6/437 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 67 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 126
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 127 EERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 184
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 185 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 244
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 245 AVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 303
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 304 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 363
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S + +DADY
Sbjct: 364 NIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADY 423
Query: 593 VNSRLGDLSINEDLSRY 609
V+ L L +EDLSR+
Sbjct: 424 VSKHLDALVADEDLSRF 440
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/386 (63%), Positives = 313/386 (81%), Gaps = 3/386 (0%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 66
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 67 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 126
Query: 894 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 953
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 127 EERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 184
Query: 954 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 1013
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 185 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 244
Query: 1014 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 1073
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 245 AVEQHGIVFIDEIDKICKR-GESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 303
Query: 1074 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 1133
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 304 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 363
Query: 1134 KIEFVDDGIQRLAEIAYCINERTENI 1159
IEF D GI+R+AE A+ +NE TENI
Sbjct: 364 NIEFTDSGIKRIAEAAWQVNESTENI 389
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/437 (61%), Positives = 353/437 (80%), Gaps = 6/437 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 14 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 73
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 74 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 133
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 134 EERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 191
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 192 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 251
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 252 AVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 310
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 311 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 370
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S + +DADY
Sbjct: 371 NIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADY 430
Query: 593 VNSRLGDLSINEDLSRY 609
V+ L L +EDLSR+
Sbjct: 431 VSKHLDALVADEDLSRF 447
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/386 (63%), Positives = 313/386 (81%), Gaps = 3/386 (0%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 14 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 73
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 74 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 133
Query: 894 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 953
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 134 EERILDVLIPPAKNNWGQTE--QQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 191
Query: 954 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 1013
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 192 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 251
Query: 1014 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 1073
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 252 AVEQHGIVFIDEIDKICKR-GESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 310
Query: 1074 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 1133
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 311 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 370
Query: 1134 KIEFVDDGIQRLAEIAYCINERTENI 1159
IEF D GI+R+AE A+ +NE TENI
Sbjct: 371 NIEFTDSGIKRIAEAAWQVNESTENI 396
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 531 bits (1368), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/439 (60%), Positives = 355/439 (80%), Gaps = 9/439 (2%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 354
E+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++ G M
Sbjct: 128 EERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS-AGVSMG 184
Query: 355 -EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKA 413
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKA
Sbjct: 185 VEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKA 244
Query: 414 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHI 473
I+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHI
Sbjct: 245 IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 303
Query: 474 LFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 533
LFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATE
Sbjct: 304 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 363
Query: 534 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLVDA 590
G+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF+++++ ++ +DA
Sbjct: 364 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 423
Query: 591 DYVNSRLGDLSINEDLSRY 609
YV LG++ NEDLSR+
Sbjct: 424 AYVADALGEVVENEDLSRF 442
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/388 (62%), Positives = 315/388 (81%), Gaps = 6/388 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 952
E+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++ G M
Sbjct: 128 EERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS-AGVSMG 184
Query: 953 -EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKA 1011
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKA
Sbjct: 185 VEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKA 244
Query: 1012 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHI 1071
I+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHI
Sbjct: 245 IDAVEQNGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 303
Query: 1072 LFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 1131
LFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATE
Sbjct: 304 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 363
Query: 1132 GIKIEFVDDGIQRLAEIAYCINERTENI 1159
G+ I F D ++++AE A+ +NE+TENI
Sbjct: 364 GVNIAFTTDAVKKIAEAAFRVNEKTENI 391
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/438 (59%), Positives = 342/438 (78%), Gaps = 7/438 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNIL IGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNRARAEDVA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN-DTGPHM 354
E+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++ +
Sbjct: 128 EERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSXGV 185
Query: 355 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 414
EI +PPG EE T Q++++F +G+ + K RK KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 186 EIXAPPGXEEXTNQLQSLFQNLGSDKTKKRKXKIKDALKALIDDEAAKLINPEELKQKAI 245
Query: 415 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 474
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G +KTDHIL
Sbjct: 246 DAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHIL 304
Query: 475 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL ATEG
Sbjct: 305 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATEG 364
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNS---NNISLLVDAD 591
+ I F D ++++AE A+ +NE+TENIGARRL+T E+L +++SF++ N ++ +DA
Sbjct: 365 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERLXDKISFSASDXNGQTVNIDAA 424
Query: 592 YVNSRLGDLSINEDLSRY 609
YV LG++ NEDLSR+
Sbjct: 425 YVADALGEVVENEDLSRF 442
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/387 (61%), Positives = 306/387 (79%), Gaps = 4/387 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNIL IGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKLVRQQEIAKNRARAEDVA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELN-DTGPHM 952
E+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++ +
Sbjct: 128 EERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSXGV 185
Query: 953 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 1012
EI +PPG EE T Q++++F +G+ + K RK KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 186 EIXAPPGXEEXTNQLQSLFQNLGSDKTKKRKXKIKDALKALIDDEAAKLINPEELKQKAI 245
Query: 1013 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 1072
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G +KTDHIL
Sbjct: 246 DAVEQNGIVFIDEIDKI-CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVKTDHIL 304
Query: 1073 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL ATEG
Sbjct: 305 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATEG 364
Query: 1133 IKIEFVDDGIQRLAEIAYCINERTENI 1159
+ I F D ++++AE A+ +NE+TENI
Sbjct: 365 VNIAFTTDAVKKIAEAAFRVNEKTENI 391
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 164/200 (82%), Gaps = 4/200 (2%)
Query: 413 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH 472
AI+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDH
Sbjct: 110 AIDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168
Query: 473 ILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 532
ILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+AT
Sbjct: 169 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 228
Query: 533 EGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLVD 589
EG+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF+++++ ++ +D
Sbjct: 229 EGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNID 288
Query: 590 ADYVNSRLGDLSINEDLSRY 609
A YV LG++ NEDLSR+
Sbjct: 289 AAYVADALGEVVENEDLSRF 308
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 124/149 (83%), Gaps = 1/149 (0%)
Query: 1011 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH 1070
AI+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDH
Sbjct: 110 AIDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168
Query: 1071 ILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 1130
ILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+AT
Sbjct: 169 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 228
Query: 1131 EGIKIEFVDDGIQRLAEIAYCINERTENI 1159
EG+ I F D ++++AE A+ +NE+TENI
Sbjct: 229 EGVNIAFTTDAVKKIAEAAFRVNEKTENI 257
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 91/98 (92%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 91/98 (92%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 105
>pdb|1E94|A Chain A, Hslv-Hslu From E.Coli
pdb|1E94|B Chain B, Hslv-Hslu From E.Coli
pdb|1E94|C Chain C, Hslv-Hslu From E.Coli
pdb|1E94|D Chain D, Hslv-Hslu From E.Coli
pdb|1G4A|B Chain B, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|A Chain A, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|D Chain D, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|C Chain C, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|M Chain M, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|N Chain N, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|O Chain O, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|P Chain P, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1HT2|A Chain A, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|B Chain B, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|C Chain C, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|D Chain D, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|I Chain I, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|J Chain J, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|K Chain K, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|L Chain L, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|C Chain C, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|D Chain D, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|V Chain V, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|X Chain X, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|A Chain A, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|B Chain B, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|Z Chain Z, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|Y Chain Y, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|A Chain A, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|B Chain B, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|C Chain C, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|D Chain D, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 175
Score = 172 bits (437), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 108/155 (69%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+SVRR V + GDGQ T GN +MK + KKVR+LY ++V+AG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENXXX 140
E LE HQG+L++A+VELAK+WR DR LR+LEA+L A+ +LIITGNGDV++PEN
Sbjct: 61 ERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLI 120
Query: 141 XXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 175
+AL ENTEL EI +K+L IA
Sbjct: 121 AIGSGGPYAQAAARALLENTELSAREIAEKALDIA 155
Score = 172 bits (437), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 108/155 (69%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+SVRR V + GDGQ T GN +MK + KKVR+LY ++V+AG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENXXX 738
E LE HQG+L++A+VELAK+WR DR LR+LEA+L A+ +LIITGNGDV++PEN
Sbjct: 61 ERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLI 120
Query: 739 XXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 773
+AL ENTEL EI +K+L IA
Sbjct: 121 AIGSGGPYAQAAARALLENTELSAREIAEKALDIA 155
>pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|B Chain B, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|C Chain C, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
Length = 183
Score = 172 bits (436), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 108/155 (69%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+SVRR V + GDGQ T GN +MK + KKVR+LY ++V+AG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENXXX 140
E LE HQG+L++A+VELAK+WR DR LR+LEA+L A+ +LIITGNGDV++PEN
Sbjct: 61 ERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLI 120
Query: 141 XXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 175
+AL ENTEL EI +K+L IA
Sbjct: 121 AIGSGGPYAQAAARALLENTELSAREIAEKALDIA 155
Score = 172 bits (436), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 108/155 (69%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+SVRR V + GDGQ T GN +MK + KKVR+LY ++V+AG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENXXX 738
E LE HQG+L++A+VELAK+WR DR LR+LEA+L A+ +LIITGNGDV++PEN
Sbjct: 61 ERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLI 120
Query: 739 XXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 773
+AL ENTEL EI +K+L IA
Sbjct: 121 AIGSGGPYAQAAARALLENTELSAREIAEKALDIA 155
>pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9 A
Resolution
pdb|1KYI|G Chain G, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|H Chain H, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|I Chain I, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|J Chain J, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|K Chain K, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|L Chain L, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|M Chain M, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|N Chain N, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|O Chain O, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|P Chain P, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|Q Chain Q, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|R Chain R, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1OFH|G Chain G, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|H Chain H, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|I Chain I, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|L Chain L, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|M Chain M, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|N Chain N, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|G Chain G, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|H Chain H, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|I Chain I, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|L Chain L, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|M Chain M, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|N Chain N, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 174
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENXX 139
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 140 XXXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 175
+AL ENTEL EI++KSL IA
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA 156
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENXX 737
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 738 XXXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 773
+AL ENTEL EI++KSL IA
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA 156
>pdb|1M4Y|A Chain A, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|B Chain B, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|C Chain C, Crystal Structure Of Hslv From Thermotoga Maritima
Length = 171
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 108/155 (69%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENXXX 140
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 141 XXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 175
KAL NT+L EI++K++ IA
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA 155
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 108/155 (69%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENXXX 738
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 739 XXXXXXXXXXXXXKALQENTELMPDEIIKKSLVIA 773
KAL NT+L EI++K++ IA
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA 155
>pdb|1YYF|D Chain D, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|C Chain C, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 181
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 98/124 (79%), Gaps = 1/124 (0%)
Query: 15 MEKFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADA 73
M F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADA
Sbjct: 1 MSSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADA 60
Query: 74 FTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVL 133
FTL + FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+
Sbjct: 61 FTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVI 120
Query: 134 EPEN 137
EP++
Sbjct: 121 EPDD 124
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 98/124 (79%), Gaps = 1/124 (0%)
Query: 613 MEKFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADA 671
M F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADA
Sbjct: 1 MSSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADA 60
Query: 672 FTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVL 731
FTL + FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+
Sbjct: 61 FTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVI 120
Query: 732 EPEN 735
EP++
Sbjct: 121 EPDD 124
>pdb|2Z3A|A Chain A, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|B Chain B, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|C Chain C, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|D Chain D, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|E Chain E, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|F Chain F, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|G Chain G, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|H Chain H, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|I Chain I, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|J Chain J, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|K Chain K, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3A|L Chain L, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|A Chain A, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|B Chain B, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|C Chain C, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|D Chain D, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|E Chain E, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|F Chain F, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|G Chain G, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|H Chain H, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|I Chain I, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|J Chain J, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|K Chain K, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
pdb|2Z3B|L Chain L, Crystal Structure Of Bacillus Subtilis Codw, A Non-
Canonical Hslv-Like Peptidase With An Impaired Catalytic
Apparatus
Length = 180
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 76
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFTL
Sbjct: 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTL 62
Query: 77 LDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPE 136
+ FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP+
Sbjct: 63 FEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122
Query: 137 N 137
+
Sbjct: 123 D 123
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 674
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFTL
Sbjct: 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTL 62
Query: 675 LDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPE 734
+ FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP+
Sbjct: 63 FEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122
Query: 735 N 735
+
Sbjct: 123 D 123
>pdb|3TY6|A Chain A, Atp-Dependent Protease Hslv From Bacillus Anthracis Str.
Ames
pdb|3TY6|B Chain B, Atp-Dependent Protease Hslv From Bacillus Anthracis Str.
Ames
pdb|3TY6|C Chain C, Atp-Dependent Protease Hslv From Bacillus Anthracis Str.
Ames
pdb|3TY6|D Chain D, Atp-Dependent Protease Hslv From Bacillus Anthracis Str.
Ames
pdb|3TY6|E Chain E, Atp-Dependent Protease Hslv From Bacillus Anthracis Str.
Ames
pdb|3TY6|F Chain F, Atp-Dependent Protease Hslv From Bacillus Anthracis Str.
Ames
Length = 183
Score = 150 bits (378), Expect = 5e-36, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 3/166 (1%)
Query: 13 SGMEKFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTA 71
+ M F TTI +V + ++ GDGQVT GN V+MK++A+KVRKL+Q +VLAG AGS A
Sbjct: 2 NAMGNFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVA 61
Query: 72 DAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGD 131
DAFTL + FE LE++ GNL RA+VE+AK+WR D+ LR+LEAML+ ++ T L+++G G+
Sbjct: 62 DAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGE 121
Query: 132 VLEPENXXXXXXXXXXXXXXXXKALQE--NTELMPDEIIKKSLVIA 175
V+EP++ +AL++ + L +I K SL IA
Sbjct: 122 VIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIA 167
Score = 150 bits (378), Expect = 5e-36, Method: Composition-based stats.
Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 3/166 (1%)
Query: 611 SGMEKFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTA 669
+ M F TTI +V + ++ GDGQVT GN V+MK++A+KVRKL+Q +VLAG AGS A
Sbjct: 2 NAMGNFHATTIFAVHHNGECAMAGDGQVTMGNAVVMKHTARKVRKLFQGKVLAGFAGSVA 61
Query: 670 DAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGD 729
DAFTL + FE LE++ GNL RA+VE+AK+WR D+ LR+LEAML+ ++ T L+++G G+
Sbjct: 62 DAFTLFEMFEGKLEEYNGNLQRAAVEMAKQWRGDKMLRQLEAMLIVMDKTTMLLVSGTGE 121
Query: 730 VLEPENXXXXXXXXXXXXXXXXKALQE--NTELMPDEIIKKSLVIA 773
V+EP++ +AL++ + L +I K SL IA
Sbjct: 122 VIEPDDGILAIGSGGNYALSAGRALKQYASEHLTAKQIAKASLEIA 167
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ--EITPKNILMIGPTGVGKTE 233
EI + LD YVIGQ +AK+ +A+A+ N ++R + G E+ NIL+IGPTG GKT
Sbjct: 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 234 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 288
+A LA+L + PF +AT TE GYVG DV+ II+ L+ Q ++++ K +
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL-----QKCDYDVQKAQ 116
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ--EITPKNILMIGPTGVGKTE 831
EI + LD YVIGQ +AK+ +A+A+ N ++R + G E+ NIL+IGPTG GKT
Sbjct: 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 832 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 886
+A LA+L + PF +AT TE GYVG DV+ II+ L+ Q ++++ K +
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL-----QKCDYDVQKAQ 116
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 58/215 (26%)
Query: 419 QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTV-----------NTKYG 466
Q GI+++D+IDKI+ +S + T D+S GVQ+ LL L+EGT ++
Sbjct: 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175
Query: 467 IIKTDHILFIASGAFH----------------------------------LAK--PSDLI 490
+ T ILFI GAF LA+ P DLI
Sbjct: 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235
Query: 491 -----PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 545
PE GR P+ L+ LS +I+ LTKQY+AL EG+ +EF D+ +
Sbjct: 236 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 295
Query: 546 RLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580
+A+ A GAR L + +E L + ++
Sbjct: 296 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYD 325
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 53/186 (28%)
Query: 1017 QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTV-----------NTKYG 1064
Q GI+++D+IDKI+ +S + T D+S GVQ+ LL L+EGT ++
Sbjct: 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175
Query: 1065 IIKTDHILFIASGAFH----------------------------------LAK--PSDLI 1088
+ T ILFI GAF LA+ P DLI
Sbjct: 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235
Query: 1089 -----PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 1143
PE GR P+ L+ LS +I+ LTKQY+AL EG+ +EF D+ +
Sbjct: 236 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 295
Query: 1144 RLAEIA 1149
+A+ A
Sbjct: 296 AIAKKA 301
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ--EITPKNILMIGPTGVGKTE 233
EI + LD YVIGQ +AK+ +A+A+ N ++R + G E+ NIL+IGPTG GKT
Sbjct: 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 234 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 288
+A LA+L + PF +AT TE GYVG DV+ II+ L+ Q ++++ K +
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL-----QKCDYDVQKAQ 116
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ--EITPKNILMIGPTGVGKTE 831
EI + LD YVIGQ +AK+ +A+A+ N ++R + G E+ NIL+IGPTG GKT
Sbjct: 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 832 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVR 886
+A LA+L + PF +AT TE GYVG DV+ II+ L+ Q ++++ K +
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL-----QKCDYDVQKAQ 116
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 58/215 (26%)
Query: 419 QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTV-----------NTKYG 466
Q GI+++D+IDKI+ +S + T D+S GVQ+ LL L+EGT ++
Sbjct: 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175
Query: 467 IIKTDHILFIASGAFH----------------------------------LAK--PSDLI 490
+ T ILFI GAF LA+ P DLI
Sbjct: 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235
Query: 491 -----PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 545
PE GR P+ L+ LS +I+ LTKQY+AL EG+ +EF D+ +
Sbjct: 236 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 295
Query: 546 RLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580
+A+ A GAR L + +E L + ++
Sbjct: 296 AIAKKAMA-----RKTGARGLRSIVEAALLDTMYD 325
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 53/186 (28%)
Query: 1017 QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTV-----------NTKYG 1064
Q GI+++D+IDKI+ +S + T D+S GVQ+ LL L+EGT ++
Sbjct: 116 QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175
Query: 1065 IIKTDHILFIASGAFH----------------------------------LAK--PSDLI 1088
+ T ILFI GAF LA+ P DLI
Sbjct: 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235
Query: 1089 -----PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 1143
PE GR P+ L+ LS +I+ LTKQY+AL EG+ +EF D+ +
Sbjct: 236 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 295
Query: 1144 RLAEIA 1149
+A+ A
Sbjct: 296 AIAKKA 301
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 56/212 (26%)
Query: 419 QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNTK-----------Y 465
Q GI+F+DEIDKI +R S+N + D+S GVQ+ LL +VEG+ VN +
Sbjct: 137 QKGIVFIDEIDKI-SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNF 195
Query: 466 GIIKTDHILFIASGAF--------------------------------HLAKPSD----- 488
I T ILFI +GAF HL + D
Sbjct: 196 IQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255
Query: 489 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 548
LIPEL GR P+ LDS+S+ I+ L KQY+ L + + + F ++ I+ +A
Sbjct: 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIA 315
Query: 549 EIAYCINERTENIGARRLYTAMEKLLEEVSFN 580
++A ER GAR L +E ++ F+
Sbjct: 316 QLAL---ER--KTGARGLRAIIEDFCLDIMFD 342
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 51/183 (27%)
Query: 1017 QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNTK-----------Y 1063
Q GI+F+DEIDKI +R S+N + D+S GVQ+ LL +VEG+ VN +
Sbjct: 137 QKGIVFIDEIDKI-SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNF 195
Query: 1064 GIIKTDHILFIASGAF--------------------------------HLAKPSD----- 1086
I T ILFI +GAF HL + D
Sbjct: 196 IQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255
Query: 1087 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 1146
LIPEL GR P+ LDS+S+ I+ L KQY+ L + + + F ++ I+ +A
Sbjct: 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIA 315
Query: 1147 EIA 1149
++A
Sbjct: 316 QLA 318
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQE----------------ITPK 219
E+ + LD YVIGQ +AK+ ++A+ N ++R L+++ ++
Sbjct: 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKS 73
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+ S
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 129
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQE----------------ITPK 817
E+ + LD YVIGQ +AK+ ++A+ N ++R L+++ ++
Sbjct: 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKS 73
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+ S
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS 129
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 185 VIGQNRAKRAVAI---ALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 241
V G + AK VA LR R Q++ G + PK +LM+GP G GKT +A+ +A
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 242 SNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
+ PF I + F E+ +VG +RD+ +
Sbjct: 69 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 98
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 783 VIGQNRAKRAVAI---ALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 839
V G + AK VA LR R Q++ G + PK +LM+GP G GKT +A+ +A
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 840 SNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
+ PF I + F E+ +VG +RD+ +
Sbjct: 69 AKVPFFTISGSDFVEM-FVGVGASR-VRDMFE 98
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + + +
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGA-ARVRDLFETAKR 130
Query: 278 QT 279
Sbjct: 131 HA 132
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + + +
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGA-ARVRDLFETAKR 130
Query: 876 QT 877
Sbjct: 131 HA 132
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + + +
Sbjct: 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGA-ARVRDLFETAKR 121
Query: 278 QT 279
Sbjct: 122 HA 123
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + + +
Sbjct: 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGA-ARVRDLFETAKR 121
Query: 876 QT 877
Sbjct: 122 HA 123
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK IL++GP G GKT +AR +A +N PF I + F E+ +VG
Sbjct: 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVG 91
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK IL++GP G GKT +AR +A +N PF I + F E+ +VG
Sbjct: 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVG 91
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
PK +L++GP G GKT +A+ +A ++ PF + + F E+ +VG +RDL + + K
Sbjct: 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETAKK 101
Query: 278 QT 279
Q
Sbjct: 102 QA 103
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
PK +L++GP G GKT +A+ +A ++ PF + + F E+ +VG +RDL + + K
Sbjct: 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-VRDLFETAKK 101
Query: 876 QT 877
Q
Sbjct: 102 QA 103
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK IL++GP G G T +AR +A +N PF I + F E+ +VG
Sbjct: 49 PKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVG 91
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK IL++GP G G T +AR +A +N PF I + F E+ +VG
Sbjct: 49 PKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVG 91
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRD 270
PK LM GP G GKT +AR A +NA F+K+ A + ++ Y+G ++RD
Sbjct: 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGA-KLVRD 265
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRD 868
PK LM GP G GKT +AR A +NA F+K+ A + ++ Y+G ++RD
Sbjct: 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGA-KLVRD 265
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + +
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 128
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + +
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 128
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + +
Sbjct: 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 104
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG +RDL + +
Sbjct: 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAAR-VRDLFETA 104
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL- 241
K V+GQ+ A RAVA A+R R + P + I + L +GPTGVGKTE+A+ LA
Sbjct: 558 KRVVGQDEAIRAVADAIRRA--RAGLKDP-NRPIG--SFLFLGPTGVGKTELAKTLAATL 612
Query: 242 --SNAPFIKIEATKFTEVGYVGR 262
+ I+I+ T++ E V R
Sbjct: 613 FDTEEAMIRIDMTEYMEKHAVSR 635
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL- 839
K V+GQ+ A RAVA A+R R + P + I + L +GPTGVGKTE+A+ LA
Sbjct: 558 KRVVGQDEAIRAVADAIRRA--RAGLKDP-NRPIG--SFLFLGPTGVGKTELAKTLAATL 612
Query: 840 --SNAPFIKIEATKFTEVGYVGR 860
+ I+I+ T++ E V R
Sbjct: 613 FDTEEAMIRIDMTEYMEKHAVSR 635
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL- 241
K V+GQ+ A RAVA A+R R + P + I + L +GPTGVGKTE+A+ LA
Sbjct: 14 KRVVGQDEAIRAVADAIRRA--RAGLKDP-NRPIG--SFLFLGPTGVGKTELAKTLAATL 68
Query: 242 --SNAPFIKIEATKFTEVGYVGR 262
+ I+I+ T++ E V R
Sbjct: 69 FDTEEAMIRIDMTEYMEKHAVSR 91
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL- 839
K V+GQ+ A RAVA A+R R + P + I + L +GPTGVGKTE+A+ LA
Sbjct: 14 KRVVGQDEAIRAVADAIRRA--RAGLKDP-NRPIG--SFLFLGPTGVGKTELAKTLAATL 68
Query: 840 --SNAPFIKIEATKFTEVGYVGR 860
+ I+I+ T++ E V R
Sbjct: 69 FDTEEAMIRIDMTEYMEKHAVSR 91
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL- 241
K V+GQ+ A RAVA A+R R + P + I + L +GPTGVGKTE+A+ LA
Sbjct: 17 KRVVGQDEAIRAVADAIRRA--RAGLKDP-NRPIG--SFLFLGPTGVGKTELAKTLAATL 71
Query: 242 --SNAPFIKIEATKFTEVGYVGR 262
+ I+I+ T++ E V R
Sbjct: 72 FDTEEAXIRIDXTEYXEKHAVSR 94
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL- 839
K V+GQ+ A RAVA A+R R + P + I + L +GPTGVGKTE+A+ LA
Sbjct: 17 KRVVGQDEAIRAVADAIRRA--RAGLKDP-NRPIG--SFLFLGPTGVGKTELAKTLAATL 71
Query: 840 --SNAPFIKIEATKFTEVGYVGR 860
+ I+I+ T++ E V R
Sbjct: 72 FDTEEAXIRIDXTEYXEKHAVSR 94
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 257
PK L++GP G GKT +A+ +A + PF+ + +F EV
Sbjct: 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV 78
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855
PK L++GP G GKT +A+ +A + PF+ + +F EV
Sbjct: 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV 78
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
PK IL+ GP G GKT I + +A S A F I A+ T +VG + ++R L ++
Sbjct: 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 172
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
PK IL+ GP G GKT I + +A S A F I A+ T +VG + ++R L ++
Sbjct: 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA 172
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
PK IL+ GP G GKT AR +A ++A FI++ ++ + YVG ++R+L +++
Sbjct: 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 298
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
PK IL+ GP G GKT AR +A ++A FI++ ++ + YVG ++R+L +++
Sbjct: 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGA-RMVRELFEMA 298
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 185 VIGQNRAKRAVA-IALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 243
+ GQ+ AK+A+ I + R + TG + +L+ GP G GKT +A+ +A SN
Sbjct: 117 IAGQDLAKQALQEIVILPSLRPELFTG---LRAPARGLLLFGPPGNGKTMLAKAVAAESN 173
Query: 244 APFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
A F I A T YVG + + ++R L ++
Sbjct: 174 ATFFNISAASLTS-KYVG-EGEKLVRALFAVA 203
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 783 VIGQNRAKRAVA-IALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841
+ GQ+ AK+A+ I + R + TG + +L+ GP G GKT +A+ +A SN
Sbjct: 117 IAGQDLAKQALQEIVILPSLRPELFTG---LRAPARGLLLFGPPGNGKTMLAKAVAAESN 173
Query: 842 APFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
A F I A T YVG + + ++R L ++
Sbjct: 174 ATFFNISAASLTS-KYVG-EGEKLVRALFAVA 203
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 185 VIGQNRAKRAVA-IALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 243
+ GQ+ AK+A+ + + R + TG K +L+ GP G GKT +AR +A +
Sbjct: 23 IAGQDVAKQALQEMVILPSVRPELFTG---LRAPAKGLLLFGPPGNGKTLLARAVATECS 79
Query: 244 APFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
A F+ I A T YVG D + ++R L ++
Sbjct: 80 ATFLNISAASLTS-KYVG-DGEKLVRALFAVA 109
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 783 VIGQNRAKRAVA-IALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841
+ GQ+ AK+A+ + + R + TG K +L+ GP G GKT +AR +A +
Sbjct: 23 IAGQDVAKQALQEMVILPSVRPELFTG---LRAPAKGLLLFGPPGNGKTLLARAVATECS 79
Query: 842 APFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
A F+ I A T YVG D + ++R L ++
Sbjct: 80 ATFLNISAASLTS-KYVG-DGEKLVRALFAVA 109
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
PK IL+ GP G GKT +A+ +A +NA FI++ ++ + ++G ++++D+ ++
Sbjct: 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK-KFIGEGA-SLVKDIFKLA 106
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
PK IL+ GP G GKT +A+ +A +NA FI++ ++ + ++G ++++D+ ++
Sbjct: 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK-KFIGEGA-SLVKDIFKLA 106
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP-KNILMIGPTGVGKTEIARRLA 239
L V GQ++A A+ A++ L E P + L GPTGVGKTE+ +L+
Sbjct: 456 LKMLVFGQDKAIEALTEAIK------MARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509
Query: 240 KLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLI 272
K ++ + +++ E GYVG D ++ D +
Sbjct: 510 KALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV 553
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP-KNILMIGPTGVGKTEIARRLA 837
L V GQ++A A+ A++ L E P + L GPTGVGKTE+ +L+
Sbjct: 456 LKMLVFGQDKAIEALTEAIK------MARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509
Query: 838 KLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLI 870
K ++ + +++ E GYVG D ++ D +
Sbjct: 510 KALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV 553
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +++ GP G GKT +AR +A ++ FI++ + + Y+G
Sbjct: 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-KYIG 224
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +++ GP G GKT +AR +A ++ FI++ + + Y+G
Sbjct: 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-KYIG 224
>pdb|2JAY|A Chain A, Proteasome Beta Subunit Prcb From Mycobacterium
Tuberculosis
Length = 291
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 19 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTL 76
GTTI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 56 HGTTIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEF 112
Query: 77 LDFFEANLEKHQ 88
+ LE ++
Sbjct: 113 ARLYAVELEHYE 124
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 617 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTL 674
GTTI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 56 HGTTIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEF 112
Query: 675 LDFFEANLEKHQ 686
+ LE ++
Sbjct: 113 ARLYAVELEHYE 124
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
P+ +L+ GP G GKT + + +A + A FI++ ++F Y+G
Sbjct: 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH-KYLG 248
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
P+ +L+ GP G GKT + + +A + A FI++ ++F Y+G
Sbjct: 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH-KYLG 248
>pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|I Chain I, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|J Chain J, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|K Chain K, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|L Chain L, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|M Chain M, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|N Chain N, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 294
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 5 RNVSSAKDSGMEKF----QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY-- 58
R+ S+ GME GTTI+++ V L GD + T GN+I +++ V K+Y
Sbjct: 46 RSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLI---ASRDVEKVYVT 102
Query: 59 QNQVLAGIAGSTADAFTLLDFFEANLEKHQ 88
AGIAG+ A L+ F LE ++
Sbjct: 103 DEYSAAGIAGTAGIAIELVRLFAVELEHYE 132
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 610 DSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGS 667
+SG GTTI+++ V L GD + T GN+I +++ V K+Y AGIAG+
Sbjct: 57 ESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLI---ASRDVEKVYVTDEYSAAGIAGT 113
Query: 668 TADAFTLLDFFEANLEKHQ 686
A L+ F LE ++
Sbjct: 114 AGIAIELVRLFAVELEHYE 132
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 216 ITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
+TP +L+ GP G GKT +A+ +A S FI ++ + + YVG
Sbjct: 42 VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVG 86
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 814 ITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
+TP +L+ GP G GKT +A+ +A S FI ++ + + YVG
Sbjct: 42 VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVG 86
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI----KIEATKFTEVGYV 260
+NI ++GP G GK+ I R+LA+ N F +IE +VG+V
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWV 50
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI----KIEATKFTEVGYV 858
+NI ++GP G GK+ I R+LA+ N F +IE +VG+V
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWV 50
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 207 QITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 266
I PL +E P NI + G TG GKT + + + + F+ KF V R +DT
Sbjct: 34 SILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL----GKFKHVYINTRQIDT 89
Query: 267 IIRDLIDI 274
R L D+
Sbjct: 90 PYRVLADL 97
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 805 QITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 864
I PL +E P NI + G TG GKT + + + + F+ KF V R +DT
Sbjct: 34 SILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL----GKFKHVYINTRQIDT 89
Query: 865 IIRDLIDI 872
R L D+
Sbjct: 90 PYRVLADL 97
>pdb|3MKA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
pdb|3MKA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
Length = 291
Score = 36.6 bits (83), Expect = 0.085, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 19 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTL 76
G TI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 56 HGATIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEF 112
Query: 77 LDFFEANLEKHQ 88
+ LE ++
Sbjct: 113 ARLYAVELEHYE 124
Score = 36.6 bits (83), Expect = 0.085, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 617 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTL 674
G TI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 56 HGATIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEF 112
Query: 675 LDFFEANLEKHQ 686
+ LE ++
Sbjct: 113 ARLYAVELEHYE 124
>pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|J Chain J, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|K Chain K, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|L Chain L, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|M Chain M, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|N Chain N, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 294
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 5 RNVSSAKDSGMEKF----QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY-- 58
R+ S+ GME GTTI+++ V L GD + T GN+I +++ V +Y
Sbjct: 46 RSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLI---ASRDVEAVYVT 102
Query: 59 QNQVLAGIAGSTADAFTLLDFFEANLEKHQ 88
AGIAG+ A L+ F LE ++
Sbjct: 103 DEYSAAGIAGTAGIAIELVRLFAVELEHYE 132
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 610 DSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGS 667
+SG GTTI+++ V L GD + T GN+I +++ V +Y AGIAG+
Sbjct: 57 ESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLI---ASRDVEAVYVTDEYSAAGIAGT 113
Query: 668 TADAFTLLDFFEANLEKHQ 686
A L+ F LE ++
Sbjct: 114 AGIAIELVRLFAVELEHYE 132
>pdb|2FHG|H Chain H, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|C Chain C, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|E Chain E, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|G Chain G, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|J Chain J, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|L Chain L, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|N Chain N, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|P Chain P, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|R Chain R, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|T Chain T, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|V Chain V, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|X Chain X, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|Z Chain Z, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHG|2 Chain 2, Crystal Structure Of Mycobacterial Tuberculosis
Proteasome
pdb|2FHH|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|2FHH|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With A Peptidyl Boronate
Inhibitor Mln-273
pdb|3HFA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3HFA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant
pdb|3MFE|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MI0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3MI0|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome At 2.2 A
pdb|3KRD|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
pdb|3KRD|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome In Complex With Fellutamide B
Length = 240
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTLLD 78
TTI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 1 TTIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEFAR 57
Query: 79 FFEANLEKHQ 88
+ LE ++
Sbjct: 58 LYAVELEHYE 67
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTLLD 676
TTI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 1 TTIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEFAR 57
Query: 677 FFEANLEKHQ 686
+ LE ++
Sbjct: 58 LYAVELEHYE 67
>pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome
pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome
pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome
pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome
pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome
pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome
pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome
Length = 235
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTLLD 78
TTI+++ V L GD + T GN+I +++ V K+Y AGIAG+ A L+
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLI---ASRDVEKVYVTDEYSAAGIAGTAGIAIELVR 57
Query: 79 FFEANLEKHQ 88
F LE ++
Sbjct: 58 LFAVELEHYE 67
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTLLD 676
TTI+++ V L GD + T GN+I +++ V K+Y AGIAG+ A L+
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLI---ASRDVEKVYVTDEYSAAGIAGTAGIAIELVR 57
Query: 677 FFEANLEKHQ 686
F LE ++
Sbjct: 58 LFAVELEHYE 67
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
PK +L+ GP G GKT +A+ +A A FI A+ + Y+G IIR++
Sbjct: 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-KYIGESA-RIIREMF 267
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
PK +L+ GP G GKT +A+ +A A FI A+ + Y+G IIR++
Sbjct: 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-KYIGESA-RIIREMF 267
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
++L+ GP GKT +A ++A+ SN PFIKI
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 94
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
++L+ GP GKT +A ++A+ SN PFIKI
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 94
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 78
TTI++V V +G D +V+ G ++ K+ L+Q ++ ++GS ADA + D
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQ-RIFCALSGSAADAQAIAD 57
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 676
TTI++V V +G D +V+ G ++ K+ L+Q ++ ++GS ADA + D
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQ-RIFCALSGSAADAQAIAD 57
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
++L+ GP GKT +A ++A+ SN PFIKI
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 95
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
++L+ GP GKT +A ++A+ SN PFIKI
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 95
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 212 LQQEITP-KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259
L+ +TP K +L GP G GKT +A+ +A A FI I+ + + +
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 810 LQQEITP-KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857
L+ +TP K +L GP G GKT +A+ +A A FI I+ + + +
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 212 LQQEITP-KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259
L+ +TP K +L GP G GKT +A+ +A A FI I+ + + +
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 810 LQQEITP-KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857
L+ +TP K +L GP G GKT +A+ +A A FI I+ + + +
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 220 NILMIGPTGVGKTEIARRLAKL---SNAPFIKIEATKFTE 256
+ + +GPTGVGKTE+AR LA+ I+I+ +++ E
Sbjct: 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 818 NILMIGPTGVGKTEIARRLAKL---SNAPFIKIEATKFTE 854
+ + +GPTGVGKTE+AR LA+ I+I+ +++ E
Sbjct: 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
P+ IL+ GP G GKT IAR +A + A F I
Sbjct: 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 602 INEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVL 661
I D++R G E GT+I++V + V LG D + T G I K+ +++ +++
Sbjct: 4 IQVDINRLKKG-EVSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVH-DKIW 61
Query: 662 AGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELA 697
+GS AD + D + +LE + S E A
Sbjct: 62 CCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETA 97
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT+I++V + V LG D + T G I K+ +++ +++ +GS AD + D
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVH-DKIWCCRSGSAADTQAIADI 77
Query: 80 FEANLEKHQGNLMRASVELA 99
+ +LE + S E A
Sbjct: 78 VQYHLELYTSQYGTPSTETA 97
>pdb|3H6F|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6F|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Ht1171
pdb|3H6I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3H6I|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Modified By Inhibitor Gl1
pdb|3HF9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|HH Chain h, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|CC Chain c, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|EE Chain e, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|GG Chain g, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|JJ Chain j, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|LL Chain l, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|NN Chain n, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|PP Chain p, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|RR Chain r, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|TT Chain t, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|VV Chain v, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|XX Chain x, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|ZZ Chain z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3HF9|4 Chain 4, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant Modified By Inhibitor Gl1
pdb|3MFE|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
pdb|3MFE|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis
Proteasome Open-Gate Mutant With H0 Movement
Length = 240
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 22 TILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTLLDF 79
TI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 2 TIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEFARL 58
Query: 80 FEANLEKHQ 88
+ LE ++
Sbjct: 59 YAVELEHYE 67
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 620 TILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLY--QNQVLAGIAGSTADAFTLLDF 677
TI++++ V + GD + T GN+I S + VRK+Y + GIAG+ A A
Sbjct: 2 TIVALKYPGGVVMAGDRRSTQGNMI---SGRDVRKVYITDDYTATGIAGTAAVAVEFARL 58
Query: 678 FEANLEKHQ 686
+ LE ++
Sbjct: 59 YAVELEHYE 67
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 216 ITP-KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259
+TP K +L GP G GKT +A+ +A A FI I+ + + +
Sbjct: 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 814 ITP-KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857
+TP K +L GP G GKT +A+ +A A FI I+ + + +
Sbjct: 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
PK I ++GPT GKT +A L K+ I +++ Y G D+ T
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI----YKGMDIGT----------- 54
Query: 278 QTREFEINKVRTRAED--AAEDRVIDILVPSKEKSNLD 313
+ AE+ AA R++DI PS+ S D
Sbjct: 55 ---------AKPNAEELLAAPHRLLDIRDPSQAYSAAD 83
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
PK I ++GPT GKT +A L K+ I +++ Y G D+ T
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI----YKGMDIGT----------- 54
Query: 876 QTREFEINKVRTRAED--AAEDRVIDILVPSKEKSNLD 911
+ AE+ AA R++DI PS+ S D
Sbjct: 55 ---------AKPNAEELLAAPHRLLDIRDPSQAYSAAD 83
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 234
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI V + + LG D + T G V+ + K+ + N G AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCG-AGTAADTDMTTQLI 59
Query: 81 EANLEKHQ 88
+NLE H
Sbjct: 60 SSNLELHS 67
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI V + + LG D + T G V+ + K+ + N G AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCG-AGTAADTDMTTQLI 59
Query: 679 EANLEKHQ 686
+NLE H
Sbjct: 60 SSNLELHS 67
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 26/98 (26%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
PK I + GPT GKT +A L K+ I +++ Y G D+ T
Sbjct: 10 PKAIFLXGPTASGKTALAIELRKILPVELISVDSALI----YKGXDIGT----------- 54
Query: 278 QTREFEINKVRTRAED--AAEDRVIDILVPSKEKSNLD 313
+ AE+ AA R++DI PS+ S D
Sbjct: 55 ---------AKPNAEELLAAPHRLLDIRDPSQAYSAAD 83
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 26/98 (26%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
PK I + GPT GKT +A L K+ I +++ Y G D+ T
Sbjct: 10 PKAIFLXGPTASGKTALAIELRKILPVELISVDSALI----YKGXDIGT----------- 54
Query: 876 QTREFEINKVRTRAED--AAEDRVIDILVPSKEKSNLD 911
+ AE+ AA R++DI PS+ S D
Sbjct: 55 ---------AKPNAEELLAAPHRLLDIRDPSQAYSAAD 83
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD+Y IGQ R K+ + + L R++ PL+ ++L+ GP G+GKT +A +A
Sbjct: 11 LDEY-IGQERLKQKLRVYLEAAKARKE---PLE------HLLLFGPPGLGKTTLAHVIA 59
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD+Y IGQ R K+ + + L R++ PL+ ++L+ GP G+GKT +A +A
Sbjct: 11 LDEY-IGQERLKQKLRVYLEAAKARKE---PLE------HLLLFGPPGLGKTTLAHVIA 59
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD+Y IGQ R K+ + + L R++ PL+ ++L+ GP G+GKT +A +A
Sbjct: 11 LDEY-IGQERLKQKLRVYLEAAKARKE---PLE------HLLLFGPPGLGKTTLAHVIA 59
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD+Y IGQ R K+ + + L R++ PL+ ++L+ GP G+GKT +A +A
Sbjct: 11 LDEY-IGQERLKQKLRVYLEAAKARKE---PLE------HLLLFGPPGLGKTTLAHVIA 59
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD+Y IGQ R K+ + + L R++ PL+ ++L+ GP G+GKT +A +A
Sbjct: 11 LDEY-IGQERLKQKLRVYLEAAKARKE---PLE------HLLLFGPPGLGKTTLAHVIA 59
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD+Y IGQ R K+ + + L R++ PL+ ++L+ GP G+GKT +A +A
Sbjct: 11 LDEY-IGQERLKQKLRVYLEAAKARKE---PLE------HLLLFGPPGLGKTTLAHVIA 59
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +++ G G GKT +A+ +A ++A F++I ++ + Y+G
Sbjct: 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-KYLG 258
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +++ G G GKT +A+ +A ++A F++I ++ + Y+G
Sbjct: 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-KYLG 258
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKL--YQNQVLAGIAGSTADAFTLL 77
GTT + + + V + + +VT N IM + KK+ ++ Y +AG+ G DA L+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVG---DAQVLV 64
Query: 78 DFFEANLEKHQ 88
+ +A LE ++
Sbjct: 65 RYMKAELELYR 75
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKL--YQNQVLAGIAGSTADAFTLL 675
GTT + + + V + + +VT N IM + KK+ ++ Y +AG+ G DA L+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVG---DAQVLV 64
Query: 676 DFFEANLEKHQ 686
+ +A LE ++
Sbjct: 65 RYMKAELELYR 75
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKL--YQNQVLAGIAGSTADAFTLL 77
GTT + + + V + + +VT N IM + KK+ ++ Y +AG+ G DA L+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVG---DAQVLV 64
Query: 78 DFFEANLEKHQ 88
+ +A LE ++
Sbjct: 65 RYMKAELELYR 75
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKL--YQNQVLAGIAGSTADAFTLL 675
GTT + + + V + + +VT N IM + KK+ ++ Y +AG+ G DA L+
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVG---DAQVLV 64
Query: 676 DFFEANLEKHQ 686
+ +A LE ++
Sbjct: 65 RYMKAELELYR 75
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI V + + LG D + T G V+ + K+ + N G AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCG-AGTAADTDMTTQLI 59
Query: 81 EANLEKH 87
+NLE H
Sbjct: 60 SSNLELH 66
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI V + + LG D + T G V+ + K+ + N G AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCG-AGTAADTDMTTQLI 59
Query: 679 EANLEKH 685
+NLE H
Sbjct: 60 SSNLELH 66
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 206 QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249
Q++T L+ I + + GP GVGKT +A+ +AK F++I
Sbjct: 100 QKLTKSLKGPI----LCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 804 QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847
Q++T L+ I + + GP GVGKT +A+ +AK F++I
Sbjct: 100 QKLTKSLKGPI----LCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 22/88 (25%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
P I+++GPT GKTE++ +AK N I ++ + Y G D+ T
Sbjct: 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQV----YQGXDIGTA---------- 52
Query: 278 QTREFEINKVRTRAEDAAEDRVIDILVP 305
KV T + IDIL P
Sbjct: 53 --------KVTTEEXEGIPHYXIDILPP 72
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 22/88 (25%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
P I+++GPT GKTE++ +AK N I ++ + Y G D+ T
Sbjct: 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQV----YQGXDIGTA---------- 52
Query: 876 QTREFEINKVRTRAEDAAEDRVIDILVP 903
KV T + IDIL P
Sbjct: 53 --------KVTTEEXEGIPHYXIDILPP 72
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
LD++ IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 24 LDEF-IGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIA 72
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263
NIL+ G GVGKT + + LA S +I + E Y G D
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD 56
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 861
NIL+ G GVGKT + + LA S +I + E Y G D
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD 56
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263
NIL+ G GVGKT + + LA S +I + E Y G D
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD 49
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 861
NIL+ G GVGKT + + LA S +I + E Y G D
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD 49
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 266
P I ++GPT GKT++A LA I +++ Y G D+ T
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI----YRGMDIGT 49
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 864
P I ++GPT GKT++A LA I +++ Y G D+ T
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI----YRGMDIGT 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,472,086
Number of Sequences: 62578
Number of extensions: 1149701
Number of successful extensions: 4060
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3791
Number of HSP's gapped (non-prelim): 232
length of query: 1165
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1056
effective length of database: 8,152,335
effective search space: 8608865760
effective search space used: 8608865760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)