Query psy2392
Match_columns 1165
No_of_seqs 645 out of 6921
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:50:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1220 HslU ATP-dependent pro 100.0 6.1E-94 1.3E-98 778.5 37.5 436 171-610 3-443 (444)
2 COG1220 HslU ATP-dependent pro 100.0 1.3E-91 2.9E-96 760.3 36.8 390 769-1162 3-394 (444)
3 TIGR00390 hslU ATP-dependent p 100.0 3.3E-80 7.2E-85 706.7 40.3 436 172-610 1-440 (441)
4 PRK05201 hslU ATP-dependent pr 100.0 1.7E-79 3.7E-84 701.2 41.3 436 172-610 4-442 (443)
5 TIGR00390 hslU ATP-dependent p 100.0 8E-79 1.7E-83 695.4 38.8 388 770-1163 1-392 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 9E-79 1.9E-83 695.3 39.2 392 769-1163 3-394 (443)
7 COG0542 clpA ATP-binding subun 100.0 6.2E-72 1.4E-76 676.9 28.6 396 9-579 276-756 (786)
8 COG0542 clpA ATP-binding subun 100.0 1E-63 2.2E-68 605.5 29.9 383 622-1163 293-742 (786)
9 PRK11034 clpA ATP-dependent Cl 100.0 1.6E-54 3.5E-59 537.2 31.9 383 9-579 292-717 (758)
10 TIGR03345 VI_ClpV1 type VI sec 100.0 4.4E-53 9.5E-58 533.6 29.7 389 15-578 299-831 (852)
11 PRK11034 clpA ATP-dependent Cl 100.0 6.7E-52 1.5E-56 513.9 38.3 351 625-1158 312-703 (758)
12 TIGR02639 ClpA ATP-dependent C 100.0 1.8E-51 4E-56 515.8 38.3 350 625-1162 308-698 (731)
13 TIGR02639 ClpA ATP-dependent C 100.0 4.8E-52 1E-56 521.1 32.2 383 8-578 287-712 (731)
14 CHL00095 clpC Clp protease ATP 100.0 8.3E-52 1.8E-56 524.3 32.4 397 8-579 284-783 (821)
15 TIGR03345 VI_ClpV1 type VI sec 100.0 5.8E-51 1.3E-55 514.4 34.3 362 624-1155 312-815 (852)
16 CHL00095 clpC Clp protease ATP 100.0 9.9E-50 2.2E-54 505.3 36.1 366 624-1158 303-769 (821)
17 TIGR03346 chaperone_ClpB ATP-d 100.0 3.3E-49 7.1E-54 501.8 28.6 389 17-579 287-827 (852)
18 COG1219 ClpX ATP-dependent pro 100.0 2.4E-49 5.2E-54 428.6 20.0 290 171-601 49-395 (408)
19 PRK10865 protein disaggregatio 100.0 7.3E-49 1.6E-53 496.8 27.0 396 8-578 284-829 (857)
20 PRK10865 protein disaggregatio 100.0 1.3E-47 2.8E-52 485.4 32.1 376 624-1157 303-815 (857)
21 COG1219 ClpX ATP-dependent pro 100.0 7.9E-49 1.7E-53 424.6 15.2 259 768-1162 48-359 (408)
22 TIGR03346 chaperone_ClpB ATP-d 100.0 9.2E-47 2E-51 479.5 33.4 365 624-1157 298-812 (852)
23 KOG0733|consensus 100.0 1.1E-45 2.3E-50 425.6 19.5 488 183-1114 190-689 (802)
24 KOG0745|consensus 100.0 9.3E-45 2E-49 405.2 21.7 284 170-594 132-528 (564)
25 KOG1051|consensus 100.0 3.1E-45 6.6E-50 449.6 18.6 387 17-578 301-834 (898)
26 KOG0745|consensus 100.0 8.4E-44 1.8E-48 397.5 19.2 255 769-1159 133-497 (564)
27 PRK05342 clpX ATP-dependent pr 100.0 3.9E-39 8.5E-44 377.1 24.6 286 171-597 59-402 (412)
28 TIGR00382 clpX endopeptidase C 100.0 3.9E-39 8.5E-44 375.1 23.9 286 171-597 65-408 (413)
29 KOG0730|consensus 100.0 1.9E-36 4.1E-41 355.4 24.9 426 183-1114 184-612 (693)
30 PRK05342 clpX ATP-dependent pr 100.0 5.4E-36 1.2E-40 350.7 21.8 255 769-1159 59-367 (412)
31 KOG1051|consensus 100.0 1.5E-35 3.3E-40 364.4 23.8 396 623-1159 311-822 (898)
32 TIGR00382 clpX endopeptidase C 100.0 3E-35 6.4E-40 342.7 21.2 256 769-1160 65-374 (413)
33 TIGR01243 CDC48 AAA family ATP 100.0 7.5E-33 1.6E-37 348.8 28.3 180 779-1114 451-632 (733)
34 KOG0736|consensus 99.9 5.3E-26 1.1E-30 269.3 24.6 209 777-1156 668-882 (953)
35 KOG0735|consensus 99.9 1.1E-24 2.4E-29 255.7 26.8 177 780-1115 666-846 (952)
36 KOG0730|consensus 99.9 1.3E-24 2.8E-29 256.2 19.7 328 27-573 317-648 (693)
37 COG1222 RPT1 ATP-dependent 26S 99.9 9.8E-25 2.1E-29 242.1 11.7 240 183-604 151-396 (406)
38 COG2256 MGS1 ATPase related to 99.9 2.5E-24 5.4E-29 242.4 14.6 147 419-613 104-260 (436)
39 COG0464 SpoVK ATPases of the A 99.9 1.6E-22 3.4E-27 245.1 29.1 175 781-1114 242-420 (494)
40 KOG0733|consensus 99.9 4.7E-23 1E-27 239.3 19.1 321 29-516 328-689 (802)
41 COG1222 RPT1 ATP-dependent 26S 99.9 9.3E-24 2E-28 234.4 11.3 180 781-1114 151-332 (406)
42 TIGR00763 lon ATP-dependent pr 99.9 5.9E-21 1.3E-25 241.9 24.1 292 156-628 293-609 (775)
43 COG2256 MGS1 ATPase related to 99.9 8.4E-22 1.8E-26 222.2 12.1 107 1018-1158 105-211 (436)
44 PRK10787 DNA-binding ATP-depen 99.9 1.5E-20 3.2E-25 236.5 23.2 276 160-602 299-584 (784)
45 COG0466 Lon ATP-dependent Lon 99.9 2E-20 4.4E-25 222.7 21.8 273 160-605 300-589 (782)
46 KOG0741|consensus 99.8 1.5E-20 3.3E-25 215.3 18.7 152 218-516 256-411 (744)
47 KOG2028|consensus 99.8 4.6E-21 1E-25 211.5 13.0 158 419-613 222-390 (554)
48 TIGR01243 CDC48 AAA family ATP 99.8 3.6E-20 7.7E-25 234.2 22.6 316 27-516 311-632 (733)
49 PF07724 AAA_2: AAA domain (Cd 99.8 5.9E-22 1.3E-26 207.2 5.3 80 419-500 68-171 (171)
50 KOG0738|consensus 99.8 6.4E-21 1.4E-25 212.7 12.4 183 779-1114 210-392 (491)
51 COG1223 Predicted ATPase (AAA+ 99.8 9.4E-21 2E-25 201.7 11.9 173 183-516 121-294 (368)
52 PF07724 AAA_2: AAA domain (Cd 99.8 7.8E-22 1.7E-26 206.3 3.4 80 1017-1098 68-171 (171)
53 KOG0736|consensus 99.8 3.7E-20 8.1E-25 220.1 17.9 315 27-515 530-853 (953)
54 PF05496 RuvB_N: Holliday junc 99.8 2E-20 4.4E-25 199.7 12.3 191 766-1150 14-212 (233)
55 PF05496 RuvB_N: Holliday junc 99.8 1.2E-19 2.5E-24 193.9 15.7 117 419-573 101-225 (233)
56 KOG0739|consensus 99.8 3.5E-20 7.5E-25 200.3 11.3 180 778-1114 130-309 (439)
57 KOG0738|consensus 99.8 3.6E-20 7.8E-25 206.7 10.8 181 183-516 212-392 (491)
58 KOG2004|consensus 99.8 2.9E-19 6.3E-24 211.2 18.6 250 160-582 388-650 (906)
59 CHL00181 cbbX CbbX; Provisiona 99.8 7.5E-19 1.6E-23 198.3 17.9 133 419-579 122-256 (287)
60 TIGR00763 lon ATP-dependent pr 99.8 1.1E-18 2.3E-23 221.5 21.3 250 743-1160 282-544 (775)
61 COG1223 Predicted ATPase (AAA+ 99.8 1.7E-19 3.6E-24 192.3 10.7 173 781-1114 121-294 (368)
62 KOG0739|consensus 99.8 2.3E-19 5E-24 194.0 11.2 202 182-553 132-333 (439)
63 KOG2028|consensus 99.8 3.8E-19 8.2E-24 196.5 11.5 114 1017-1158 222-335 (554)
64 TIGR02881 spore_V_K stage V sp 99.8 3E-18 6.6E-23 191.2 18.3 133 419-579 105-240 (261)
65 KOG0728|consensus 99.8 3.6E-19 7.9E-24 188.3 10.1 243 183-603 147-391 (404)
66 KOG0727|consensus 99.8 6.9E-19 1.5E-23 186.4 11.1 173 781-1113 155-335 (408)
67 TIGR02880 cbbX_cfxQ probable R 99.8 5.7E-18 1.2E-22 191.2 17.5 133 419-579 121-255 (284)
68 PRK10787 DNA-binding ATP-depen 99.8 8.6E-18 1.9E-22 211.7 20.2 249 742-1160 283-545 (784)
69 KOG0735|consensus 99.8 1.5E-17 3.2E-22 196.4 20.1 306 25-516 535-845 (952)
70 COG0466 Lon ATP-dependent Lon 99.8 1E-17 2.3E-22 199.8 18.9 259 741-1159 283-546 (782)
71 KOG0727|consensus 99.7 3.3E-18 7.2E-23 181.3 10.6 176 182-514 154-334 (408)
72 CHL00181 cbbX CbbX; Provisiona 99.7 9.6E-18 2.1E-22 189.4 14.7 116 1017-1160 122-238 (287)
73 KOG0728|consensus 99.7 3.6E-18 7.8E-23 180.9 10.2 181 781-1116 147-330 (404)
74 KOG0731|consensus 99.7 7.4E-18 1.6E-22 205.2 14.1 173 781-1114 311-492 (774)
75 KOG0731|consensus 99.7 1.6E-17 3.4E-22 202.3 15.7 178 183-516 311-492 (774)
76 KOG0734|consensus 99.7 7.4E-18 1.6E-22 193.7 10.5 176 781-1114 304-481 (752)
77 PLN00020 ribulose bisphosphate 99.7 4.7E-17 1E-21 184.3 16.6 155 816-1114 148-308 (413)
78 KOG2004|consensus 99.7 3.3E-17 7.3E-22 194.0 15.8 242 750-1159 380-634 (906)
79 TIGR02881 spore_V_K stage V sp 99.7 4E-17 8.6E-22 182.3 15.5 107 1017-1151 105-212 (261)
80 KOG0737|consensus 99.7 1.5E-17 3.3E-22 186.4 10.4 188 769-1114 81-271 (386)
81 PLN00020 ribulose bisphosphate 99.7 2.9E-16 6.4E-21 177.9 18.9 191 217-568 147-343 (413)
82 KOG0734|consensus 99.7 4.1E-17 8.9E-22 187.6 11.6 187 172-516 293-481 (752)
83 TIGR02880 cbbX_cfxQ probable R 99.7 1.3E-16 2.9E-21 180.1 14.9 106 1017-1149 121-227 (284)
84 PTZ00454 26S protease regulato 99.7 2.1E-16 4.5E-21 185.7 16.8 242 182-602 144-388 (398)
85 COG0464 SpoVK ATPases of the A 99.7 3E-16 6.5E-21 190.5 18.3 176 182-516 241-420 (494)
86 KOG0737|consensus 99.7 1.3E-16 2.8E-21 179.1 12.1 189 173-516 83-271 (386)
87 PTZ00454 26S protease regulato 99.7 3.9E-16 8.4E-21 183.4 16.7 178 780-1114 144-326 (398)
88 KOG0740|consensus 99.7 2.1E-16 4.6E-21 183.1 13.3 206 776-1150 148-353 (428)
89 CHL00195 ycf46 Ycf46; Provisio 99.7 3E-16 6.5E-21 188.1 14.9 212 183-574 228-441 (489)
90 TIGR01241 FtsH_fam ATP-depende 99.7 6.1E-16 1.3E-20 187.7 16.2 177 184-516 56-235 (495)
91 CHL00195 ycf46 Ycf46; Provisio 99.7 7.1E-16 1.5E-20 184.9 16.5 170 781-1114 228-402 (489)
92 TIGR03689 pup_AAA proteasome A 99.7 4.1E-16 8.9E-21 186.8 14.4 180 183-516 182-375 (512)
93 KOG0652|consensus 99.7 2.2E-16 4.8E-21 168.2 10.6 177 183-516 171-352 (424)
94 PRK14956 DNA polymerase III su 99.7 8.9E-16 1.9E-20 181.5 16.9 124 419-598 121-244 (484)
95 PRK03992 proteasome-activating 99.7 9.3E-16 2E-20 180.6 16.9 178 182-516 130-312 (389)
96 KOG0652|consensus 99.7 1.8E-16 3.8E-21 169.0 9.6 180 781-1114 171-352 (424)
97 TIGR03689 pup_AAA proteasome A 99.7 6.4E-16 1.4E-20 185.1 15.2 182 781-1114 182-375 (512)
98 KOG0726|consensus 99.7 8E-17 1.7E-21 174.0 5.8 180 781-1114 185-366 (440)
99 KOG0726|consensus 99.7 1.2E-16 2.6E-21 172.6 7.1 180 183-516 185-366 (440)
100 PRK03992 proteasome-activating 99.6 9.2E-16 2E-20 180.6 14.2 182 779-1114 129-312 (389)
101 COG2255 RuvB Holliday junction 99.6 1.8E-15 3.9E-20 164.5 14.1 191 766-1150 16-214 (332)
102 PRK14956 DNA polymerase III su 99.6 9E-16 2E-20 181.4 12.1 94 1018-1152 122-215 (484)
103 COG2255 RuvB Holliday junction 99.6 3.4E-15 7.3E-20 162.3 15.3 142 418-600 102-251 (332)
104 COG0465 HflB ATP-dependent Zn 99.6 1.6E-15 3.5E-20 182.3 14.1 235 183-600 150-390 (596)
105 TIGR01241 FtsH_fam ATP-depende 99.6 2.3E-15 4.9E-20 182.8 15.3 178 781-1114 55-235 (495)
106 KOG0729|consensus 99.6 6.8E-16 1.5E-20 165.0 8.4 180 182-516 176-358 (435)
107 PRK07003 DNA polymerase III su 99.6 2.6E-15 5.6E-20 183.1 14.2 95 1017-1152 119-213 (830)
108 PTZ00361 26 proteosome regulat 99.6 2.5E-15 5.4E-20 177.8 13.6 176 183-516 183-364 (438)
109 KOG0651|consensus 99.6 7E-16 1.5E-20 168.7 8.2 184 781-1118 132-317 (388)
110 PRK14962 DNA polymerase III su 99.6 8.9E-15 1.9E-19 175.3 18.0 138 419-613 117-254 (472)
111 KOG0740|consensus 99.6 4.6E-15 1E-19 172.1 14.4 205 180-553 150-354 (428)
112 PTZ00361 26 proteosome regulat 99.6 3.7E-15 8E-20 176.4 13.6 179 781-1114 183-364 (438)
113 PRK14949 DNA polymerase III su 99.6 9.6E-15 2.1E-19 181.2 17.7 107 419-574 119-225 (944)
114 KOG0729|consensus 99.6 7.2E-16 1.6E-20 164.8 6.7 180 781-1114 177-358 (435)
115 PRK13341 recombination factor 99.6 4.8E-15 1E-19 185.0 14.8 150 419-613 109-269 (725)
116 CHL00176 ftsH cell division pr 99.6 8.5E-15 1.8E-19 180.7 16.4 215 183-574 183-400 (638)
117 PRK14949 DNA polymerase III su 99.6 4.3E-15 9.4E-20 184.3 13.1 94 1017-1151 119-212 (944)
118 PRK07003 DNA polymerase III su 99.6 1.2E-14 2.5E-19 177.5 16.6 124 419-598 119-242 (830)
119 TIGR00635 ruvB Holliday juncti 99.6 2E-14 4.3E-19 163.8 17.5 140 419-599 81-228 (305)
120 PRK12323 DNA polymerase III su 99.6 4.7E-15 1E-19 179.0 12.6 94 1017-1151 124-217 (700)
121 COG0465 HflB ATP-dependent Zn 99.6 5.6E-15 1.2E-19 177.7 13.0 173 781-1114 150-330 (596)
122 PRK14960 DNA polymerase III su 99.6 1.4E-14 3.1E-19 175.3 16.5 125 419-599 118-242 (702)
123 PRK14962 DNA polymerase III su 99.6 8.8E-15 1.9E-19 175.4 14.4 93 1017-1150 117-209 (472)
124 TIGR01242 26Sp45 26S proteasom 99.6 1.3E-14 2.8E-19 169.7 15.4 80 181-262 120-199 (364)
125 PRK07994 DNA polymerase III su 99.6 2.1E-14 4.5E-19 176.2 17.7 124 419-598 119-242 (647)
126 PRK12323 DNA polymerase III su 99.6 1.2E-14 2.6E-19 175.6 15.2 124 419-598 124-247 (700)
127 PRK13342 recombination factor 99.6 9.4E-15 2E-19 173.6 14.2 126 419-599 92-218 (413)
128 PRK14958 DNA polymerase III su 99.6 1.8E-14 3.9E-19 174.3 15.9 124 419-598 119-242 (509)
129 PRK00080 ruvB Holliday junctio 99.6 1.9E-14 4.2E-19 165.9 13.9 113 1017-1159 102-222 (328)
130 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.8E-14 3.9E-19 186.2 14.8 121 419-574 1732-1854(2281)
131 PRK07994 DNA polymerase III su 99.6 1.9E-14 4.1E-19 176.6 14.3 93 1018-1151 120-212 (647)
132 PRK14958 DNA polymerase III su 99.6 1.4E-14 3E-19 175.3 13.0 93 1017-1150 119-211 (509)
133 PRK14960 DNA polymerase III su 99.6 1.7E-14 3.7E-19 174.6 13.4 92 1018-1150 119-210 (702)
134 PRK00080 ruvB Holliday junctio 99.6 5.3E-14 1.2E-18 162.3 16.9 139 419-598 102-248 (328)
135 PRK06645 DNA polymerase III su 99.6 4.5E-14 9.8E-19 170.0 16.8 130 419-601 128-257 (507)
136 CHL00176 ftsH cell division pr 99.5 3.6E-14 7.8E-19 175.2 15.4 178 781-1114 183-363 (638)
137 KOG0989|consensus 99.5 1.1E-14 2.3E-19 159.9 9.5 94 1017-1151 129-222 (346)
138 PLN03025 replication factor C 99.5 1.6E-14 3.4E-19 166.0 11.1 92 1018-1150 100-191 (319)
139 PRK14957 DNA polymerase III su 99.5 8.3E-14 1.8E-18 168.7 17.3 125 419-599 119-243 (546)
140 TIGR00635 ruvB Holliday juncti 99.5 7.4E-14 1.6E-18 159.1 15.9 106 1017-1152 81-194 (305)
141 PRK13342 recombination factor 99.5 3E-14 6.5E-19 169.3 13.1 94 1017-1149 92-186 (413)
142 PRK14961 DNA polymerase III su 99.5 1.2E-13 2.6E-18 161.5 17.2 124 419-598 119-242 (363)
143 TIGR01242 26Sp45 26S proteasom 99.5 7E-14 1.5E-18 163.5 14.6 182 779-1114 120-303 (364)
144 PRK07764 DNA polymerase III su 99.5 1.1E-13 2.3E-18 174.9 16.9 125 419-598 120-244 (824)
145 PRK14964 DNA polymerase III su 99.5 1.1E-13 2.4E-18 165.5 16.2 124 419-598 116-239 (491)
146 TIGR02903 spore_lon_C ATP-depe 99.5 1.8E-13 3.9E-18 169.4 18.7 105 1017-1151 265-387 (615)
147 PRK13341 recombination factor 99.5 4.9E-14 1.1E-18 176.0 13.3 98 1017-1149 109-207 (725)
148 PRK14961 DNA polymerase III su 99.5 1.1E-13 2.3E-18 162.0 15.2 92 1018-1150 120-211 (363)
149 PRK08691 DNA polymerase III su 99.5 1.1E-13 2.5E-18 169.0 15.9 125 419-599 119-243 (709)
150 PRK14952 DNA polymerase III su 99.5 1.7E-13 3.8E-18 167.3 17.0 125 419-598 118-242 (584)
151 PRK14951 DNA polymerase III su 99.5 1.9E-13 4.2E-18 167.4 17.2 125 419-599 124-248 (618)
152 PLN03025 replication factor C 99.5 1.6E-13 3.4E-18 157.8 15.5 105 419-572 99-203 (319)
153 PRK14957 DNA polymerase III su 99.5 1.1E-13 2.5E-18 167.5 14.6 93 1017-1150 119-211 (546)
154 PRK06645 DNA polymerase III su 99.5 1.1E-13 2.4E-18 166.6 14.4 93 1017-1150 128-220 (507)
155 PRK14951 DNA polymerase III su 99.5 9.7E-14 2.1E-18 170.0 14.0 92 1018-1150 125-216 (618)
156 PRK14964 DNA polymerase III su 99.5 1E-13 2.3E-18 165.7 13.3 93 1017-1150 116-208 (491)
157 KOG0651|consensus 99.5 3.4E-14 7.3E-19 155.7 8.3 182 183-518 132-315 (388)
158 PRK08691 DNA polymerase III su 99.5 1.1E-13 2.3E-18 169.3 12.8 93 1017-1150 119-211 (709)
159 TIGR02902 spore_lonB ATP-depen 99.5 2.3E-13 5E-18 166.0 15.7 139 419-599 175-331 (531)
160 CHL00206 ycf2 Ycf2; Provisiona 99.5 9.7E-14 2.1E-18 179.6 12.6 81 1017-1114 1732-1814(2281)
161 KOG0989|consensus 99.5 1.3E-13 2.8E-18 151.6 11.8 106 419-573 129-234 (346)
162 PRK07764 DNA polymerase III su 99.5 1.8E-13 3.9E-18 172.8 14.3 93 1017-1150 120-212 (824)
163 PRK14959 DNA polymerase III su 99.5 4.5E-13 9.8E-18 163.2 16.9 124 419-598 119-242 (624)
164 TIGR02902 spore_lonB ATP-depen 99.5 2.3E-13 5.1E-18 166.0 13.3 104 1017-1150 175-296 (531)
165 PRK14969 DNA polymerase III su 99.5 3.7E-13 8.1E-18 163.9 14.9 124 419-598 119-242 (527)
166 PRK14952 DNA polymerase III su 99.5 2.8E-13 6.1E-18 165.5 13.7 94 1017-1151 118-211 (584)
167 PRK14965 DNA polymerase III su 99.5 5.6E-13 1.2E-17 164.0 15.9 124 419-598 119-242 (576)
168 PRK05563 DNA polymerase III su 99.5 9.2E-13 2E-17 161.5 17.4 124 419-598 119-242 (559)
169 PRK14969 DNA polymerase III su 99.5 3E-13 6.6E-18 164.7 12.9 93 1017-1150 119-211 (527)
170 PRK07133 DNA polymerase III su 99.4 1.2E-12 2.7E-17 161.5 17.5 124 419-598 118-241 (725)
171 PRK14959 DNA polymerase III su 99.4 5.1E-13 1.1E-17 162.8 13.7 94 1017-1151 119-212 (624)
172 PRK14963 DNA polymerase III su 99.4 1.4E-12 3E-17 157.8 17.1 123 419-598 116-238 (504)
173 KOG0741|consensus 99.4 8.7E-14 1.9E-18 160.5 6.4 149 816-1114 256-411 (744)
174 PF00004 AAA: ATPase family as 99.4 2.2E-13 4.7E-18 134.6 8.3 72 1018-1102 59-131 (132)
175 PRK10733 hflB ATP-dependent me 99.4 1.2E-12 2.7E-17 163.1 16.7 177 184-516 153-332 (644)
176 KOG0991|consensus 99.4 2E-13 4.3E-18 144.3 7.9 99 1018-1157 114-212 (333)
177 PRK05896 DNA polymerase III su 99.4 1.5E-12 3.3E-17 157.9 16.6 107 419-574 119-225 (605)
178 PRK07133 DNA polymerase III su 99.4 8.5E-13 1.8E-17 162.9 14.5 94 1017-1151 118-211 (725)
179 PRK14963 DNA polymerase III su 99.4 8.3E-13 1.8E-17 159.7 14.1 93 1017-1150 116-208 (504)
180 PRK14965 DNA polymerase III su 99.4 6.7E-13 1.5E-17 163.3 13.1 94 1017-1151 119-212 (576)
181 PRK08451 DNA polymerase III su 99.4 2.2E-12 4.8E-17 155.7 16.7 124 419-598 117-240 (535)
182 PRK05563 DNA polymerase III su 99.4 1.2E-12 2.5E-17 160.6 14.6 93 1017-1150 119-211 (559)
183 PF00004 AAA: ATPase family as 99.4 5.4E-13 1.2E-17 131.9 9.5 72 420-504 59-131 (132)
184 PRK06305 DNA polymerase III su 99.4 1.5E-12 3.3E-17 155.9 15.1 93 1017-1150 121-213 (451)
185 PRK06647 DNA polymerase III su 99.4 2.6E-12 5.6E-17 157.2 17.3 124 419-598 119-242 (563)
186 KOG0732|consensus 99.4 1.4E-12 3.1E-17 163.2 14.6 225 172-573 253-485 (1080)
187 PRK05896 DNA polymerase III su 99.4 1.2E-12 2.7E-17 158.7 13.7 93 1017-1150 119-211 (605)
188 PRK10733 hflB ATP-dependent me 99.4 1.5E-12 3.3E-17 162.3 14.7 178 781-1114 152-332 (644)
189 PRK08451 DNA polymerase III su 99.4 1.1E-12 2.3E-17 158.4 12.8 94 1017-1151 117-210 (535)
190 PRK06305 DNA polymerase III su 99.4 4.8E-12 1E-16 151.6 17.6 124 419-598 121-244 (451)
191 PRK14955 DNA polymerase III su 99.4 1.4E-12 3E-17 154.3 12.4 93 1017-1150 127-219 (397)
192 PRK09111 DNA polymerase III su 99.4 4.8E-12 1E-16 155.5 17.1 125 419-599 132-256 (598)
193 PRK12402 replication factor C 99.4 3.1E-12 6.7E-17 147.5 14.1 136 419-611 125-260 (337)
194 PRK14955 DNA polymerase III su 99.4 3.7E-12 8E-17 150.7 14.7 128 419-598 127-255 (397)
195 PRK14954 DNA polymerase III su 99.4 7.4E-12 1.6E-16 154.1 17.8 128 419-598 127-255 (620)
196 PHA02544 44 clamp loader, smal 99.4 1.5E-12 3.4E-17 149.1 10.9 105 1017-1154 100-204 (316)
197 PRK04195 replication factor C 99.4 2.4E-12 5.1E-17 156.0 12.9 70 768-852 6-75 (482)
198 TIGR02903 spore_lon_C ATP-depe 99.4 7.1E-12 1.5E-16 155.4 17.1 142 419-599 265-429 (615)
199 PRK14954 DNA polymerase III su 99.4 4.1E-12 8.8E-17 156.4 14.8 93 1017-1150 127-219 (620)
200 PRK14953 DNA polymerase III su 99.4 7.2E-12 1.6E-16 151.1 16.7 124 419-598 119-242 (486)
201 PRK06647 DNA polymerase III su 99.4 4.8E-12 1E-16 154.8 14.5 93 1017-1150 119-211 (563)
202 PRK14970 DNA polymerase III su 99.4 6.6E-12 1.4E-16 147.1 15.1 93 1017-1150 108-200 (367)
203 TIGR02397 dnaX_nterm DNA polym 99.3 6.2E-12 1.4E-16 146.2 14.1 93 1017-1150 117-209 (355)
204 PRK14970 DNA polymerase III su 99.3 1.7E-11 3.7E-16 143.6 17.8 107 419-574 108-214 (367)
205 COG2812 DnaX DNA polymerase II 99.3 4.4E-12 9.6E-17 151.5 12.8 124 419-598 119-242 (515)
206 PRK14971 DNA polymerase III su 99.3 1.2E-11 2.7E-16 152.8 17.2 107 419-574 121-227 (614)
207 TIGR02397 dnaX_nterm DNA polym 99.3 1.5E-11 3.2E-16 143.1 16.4 124 419-598 117-240 (355)
208 PRK14953 DNA polymerase III su 99.3 7.6E-12 1.6E-16 150.9 14.1 93 1017-1150 119-211 (486)
209 PRK14948 DNA polymerase III su 99.3 1.4E-11 3E-16 152.4 16.7 107 419-574 121-227 (620)
210 PRK12402 replication factor C 99.3 5.4E-12 1.2E-16 145.4 12.2 92 1017-1149 125-216 (337)
211 PRK04195 replication factor C 99.3 1.6E-11 3.6E-16 148.8 16.5 61 184-254 15-75 (482)
212 PRK09111 DNA polymerase III su 99.3 6.1E-12 1.3E-16 154.6 12.9 93 1017-1150 132-224 (598)
213 PRK14971 DNA polymerase III su 99.3 1E-11 2.2E-16 153.6 14.3 93 1017-1150 121-213 (614)
214 TIGR02928 orc1/cdc6 family rep 99.3 4.5E-11 9.8E-16 139.6 19.0 144 419-599 129-273 (365)
215 PRK07940 DNA polymerase III su 99.3 2E-11 4.4E-16 143.5 15.7 87 419-551 117-203 (394)
216 PRK14950 DNA polymerase III su 99.3 2.4E-11 5.3E-16 150.2 17.0 124 419-598 120-243 (585)
217 PHA02544 44 clamp loader, smal 99.3 4.1E-11 8.9E-16 137.3 17.3 114 419-573 100-213 (316)
218 PRK14948 DNA polymerase III su 99.3 1.6E-11 3.4E-16 151.9 14.0 92 1018-1150 122-213 (620)
219 PRK00411 cdc6 cell division co 99.3 8.5E-11 1.9E-15 138.8 19.7 144 419-600 138-282 (394)
220 PRK14950 DNA polymerase III su 99.3 1.8E-11 4E-16 151.3 14.1 93 1017-1150 120-212 (585)
221 PRK08084 DNA replication initi 99.3 3E-11 6.5E-16 133.1 13.9 131 420-597 98-233 (235)
222 PRK07940 DNA polymerase III su 99.3 3.9E-11 8.4E-16 141.2 15.1 70 1017-1114 117-186 (394)
223 COG2812 DnaX DNA polymerase II 99.3 1.8E-11 3.8E-16 146.4 11.9 94 1017-1151 119-212 (515)
224 PTZ00112 origin recognition co 99.3 9.2E-11 2E-15 144.0 17.8 117 420-575 870-987 (1164)
225 PRK00440 rfc replication facto 99.2 1.1E-10 2.4E-15 133.5 16.4 123 419-598 102-224 (319)
226 KOG0991|consensus 99.2 2.7E-11 5.8E-16 128.4 9.9 106 420-574 114-219 (333)
227 PRK00440 rfc replication facto 99.2 3.6E-11 7.9E-16 137.4 11.9 91 1018-1149 103-193 (319)
228 PRK09112 DNA polymerase III su 99.2 6.5E-11 1.4E-15 137.5 13.0 124 384-571 119-242 (351)
229 KOG0744|consensus 99.2 3.6E-11 7.9E-16 132.7 9.7 84 422-517 253-338 (423)
230 KOG0732|consensus 99.2 7.1E-11 1.5E-15 148.3 12.8 177 781-1114 265-448 (1080)
231 PRK13531 regulatory ATPase Rav 99.2 3.5E-10 7.7E-15 134.1 18.0 134 421-571 109-258 (498)
232 PRK06893 DNA replication initi 99.2 9.8E-11 2.1E-15 128.6 12.0 132 419-597 91-227 (229)
233 TIGR03420 DnaA_homol_Hda DnaA 99.2 1.9E-10 4.2E-15 125.1 13.6 133 420-597 91-225 (226)
234 COG5405 HslV ATP-dependent pro 99.2 8.3E-11 1.8E-15 117.5 9.2 154 616-769 2-155 (178)
235 PRK13531 regulatory ATPase Rav 99.2 2.7E-10 5.9E-15 135.0 14.6 117 1020-1151 110-238 (498)
236 TIGR02640 gas_vesic_GvpN gas v 99.1 9.8E-10 2.1E-14 123.1 16.2 84 419-516 105-195 (262)
237 PF06068 TIP49: TIP49 C-termin 99.1 3E-10 6.5E-15 129.3 11.2 97 419-553 278-382 (398)
238 TIGR00764 lon_rel lon-related 99.1 1.5E-10 3.3E-15 143.2 9.6 157 414-598 213-389 (608)
239 TIGR02928 orc1/cdc6 family rep 99.1 2E-09 4.3E-14 125.8 18.4 106 1017-1151 129-235 (365)
240 PF06068 TIP49: TIP49 C-termin 99.1 1.2E-10 2.6E-15 132.5 7.8 298 781-1152 24-383 (398)
241 PTZ00112 origin recognition co 99.1 1.4E-09 3E-14 133.9 17.2 100 1019-1152 871-971 (1164)
242 PRK09112 DNA polymerase III su 99.1 3.6E-10 7.7E-15 131.4 11.4 90 1018-1150 142-231 (351)
243 PRK13407 bchI magnesium chelat 99.1 2.6E-10 5.7E-15 131.3 10.2 114 1017-1152 128-267 (334)
244 PRK08727 hypothetical protein; 99.1 5.8E-10 1.3E-14 122.8 11.9 132 419-598 93-229 (233)
245 TIGR02974 phageshock_pspF psp 99.1 8.5E-10 1.8E-14 127.5 13.8 130 419-575 93-231 (329)
246 TIGR02640 gas_vesic_GvpN gas v 99.1 1.7E-09 3.8E-14 121.1 15.4 85 1017-1115 105-196 (262)
247 CHL00081 chlI Mg-protoporyphyr 99.1 3.8E-10 8.3E-15 130.2 10.1 120 1017-1152 144-283 (350)
248 TIGR02442 Cob-chelat-sub cobal 99.1 1.1E-09 2.4E-14 136.8 14.8 118 1017-1152 126-265 (633)
249 COG0714 MoxR-like ATPases [Gen 99.1 4.2E-10 9E-15 130.2 10.3 68 173-256 14-81 (329)
250 PRK00411 cdc6 cell division co 99.1 4.4E-09 9.6E-14 124.2 19.0 104 1018-1151 139-243 (394)
251 TIGR02442 Cob-chelat-sub cobal 99.1 2.3E-09 5E-14 133.9 17.1 153 419-597 126-301 (633)
252 COG1221 PspF Transcriptional r 99.0 4.3E-10 9.4E-15 130.8 9.8 207 780-1152 77-293 (403)
253 TIGR01817 nifA Nif-specific re 99.0 1.4E-09 3E-14 133.8 14.2 130 419-575 290-426 (534)
254 PRK08084 DNA replication initi 99.0 7.2E-10 1.6E-14 122.2 10.6 98 1019-1151 99-201 (235)
255 COG5405 HslV ATP-dependent pro 99.0 4.2E-10 9.1E-15 112.6 7.7 154 18-171 2-155 (178)
256 PRK07399 DNA polymerase III su 99.0 3E-09 6.6E-14 122.0 15.6 95 380-516 98-192 (314)
257 COG1224 TIP49 DNA helicase TIP 99.0 4E-09 8.6E-14 118.3 15.9 82 780-873 38-121 (450)
258 TIGR02974 phageshock_pspF psp 99.0 1.4E-09 3.1E-14 125.6 13.0 115 1017-1152 93-217 (329)
259 PRK13407 bchI magnesium chelat 99.0 2.1E-09 4.6E-14 123.8 14.2 154 419-597 128-303 (334)
260 TIGR00764 lon_rel lon-related 99.0 7.5E-10 1.6E-14 137.1 10.1 111 1017-1150 217-344 (608)
261 PRK04132 replication factor C 99.0 2.3E-09 5E-14 135.3 14.2 106 420-574 631-736 (846)
262 PRK00149 dnaA chromosomal repl 99.0 1.2E-09 2.5E-14 131.7 11.1 134 419-600 211-349 (450)
263 PF07728 AAA_5: AAA domain (dy 99.0 5.2E-10 1.1E-14 112.7 6.8 66 419-497 65-139 (139)
264 PRK05642 DNA replication initi 99.0 1.7E-09 3.8E-14 119.1 11.4 134 420-598 98-233 (234)
265 PRK07471 DNA polymerase III su 99.0 2.4E-09 5.3E-14 125.1 13.1 92 384-516 119-210 (365)
266 KOG0744|consensus 99.0 1.3E-09 2.8E-14 120.7 9.9 84 1020-1115 253-338 (423)
267 PRK08903 DnaA regulatory inact 99.0 3.5E-09 7.5E-14 115.9 13.5 132 420-598 91-224 (227)
268 TIGR00678 holB DNA polymerase 99.0 4.1E-09 8.9E-14 112.0 13.6 86 419-551 96-181 (188)
269 COG1221 PspF Transcriptional r 99.0 1.5E-09 3.3E-14 126.4 10.5 132 419-577 173-309 (403)
270 PRK05564 DNA polymerase III su 99.0 4.5E-09 9.7E-14 120.8 14.3 70 419-516 93-162 (313)
271 COG0714 MoxR-like ATPases [Gen 99.0 3.4E-09 7.3E-14 122.6 13.0 69 771-855 14-82 (329)
272 CHL00081 chlI Mg-protoporyphyr 99.0 6.4E-09 1.4E-13 120.2 14.9 133 419-571 144-296 (350)
273 KOG0742|consensus 99.0 3.6E-09 7.8E-14 119.7 12.3 118 1020-1152 446-572 (630)
274 PRK12422 chromosomal replicati 99.0 3.1E-09 6.7E-14 127.3 12.7 140 419-600 202-343 (445)
275 TIGR00368 Mg chelatase-related 99.0 5E-09 1.1E-13 126.8 14.4 134 419-571 295-473 (499)
276 TIGR02030 BchI-ChlI magnesium 99.0 3.7E-09 8.1E-14 122.1 12.4 120 1017-1152 131-270 (337)
277 TIGR03420 DnaA_homol_Hda DnaA 99.0 4.5E-09 9.8E-14 114.4 12.4 100 1018-1152 91-193 (226)
278 PHA02244 ATPase-like protein 98.9 2.5E-08 5.5E-13 114.9 18.5 115 419-549 180-305 (383)
279 TIGR00362 DnaA chromosomal rep 98.9 2.1E-09 4.5E-14 127.9 10.1 136 420-600 200-337 (405)
280 COG1474 CDC6 Cdc6-related prot 98.9 2.1E-08 4.5E-13 117.3 18.1 138 419-596 123-261 (366)
281 smart00763 AAA_PrkA PrkA AAA d 98.9 1.2E-08 2.5E-13 117.7 15.4 272 781-1150 51-350 (361)
282 PRK06893 DNA replication initi 98.9 2.4E-09 5.3E-14 117.6 9.4 99 1017-1150 91-194 (229)
283 PRK04132 replication factor C 98.9 2.2E-09 4.8E-14 135.4 10.0 94 1018-1152 631-724 (846)
284 TIGR00678 holB DNA polymerase 98.9 1.3E-08 2.9E-13 108.1 14.4 87 1017-1150 96-182 (188)
285 PRK08058 DNA polymerase III su 98.9 1E-08 2.3E-13 118.6 14.5 71 1017-1115 110-180 (329)
286 COG1224 TIP49 DNA helicase TIP 98.9 9E-09 2E-13 115.5 13.2 68 180-256 36-105 (450)
287 TIGR01817 nifA Nif-specific re 98.9 5.1E-09 1.1E-13 128.8 12.5 115 1017-1152 290-412 (534)
288 KOG1942|consensus 98.9 6.6E-08 1.4E-12 105.8 19.4 64 181-256 36-104 (456)
289 PF07728 AAA_5: AAA domain (dy 98.9 6.1E-10 1.3E-14 112.2 3.5 37 818-854 1-37 (139)
290 TIGR01650 PD_CobS cobaltochela 98.9 1.4E-08 3.1E-13 115.8 14.8 85 419-516 134-230 (327)
291 KOG0742|consensus 98.9 2.8E-08 6.1E-13 112.7 16.6 137 420-574 444-589 (630)
292 PRK08903 DnaA regulatory inact 98.9 1E-08 2.2E-13 112.3 12.8 96 1018-1148 91-188 (227)
293 PRK05564 DNA polymerase III su 98.9 9.8E-09 2.1E-13 118.0 13.3 70 1017-1114 93-162 (313)
294 TIGR01650 PD_CobS cobaltochela 98.9 1.1E-08 2.3E-13 116.8 13.2 85 1017-1114 134-230 (327)
295 PRK11608 pspF phage shock prot 98.9 1.5E-08 3.2E-13 117.1 14.6 130 419-575 100-238 (326)
296 PRK07399 DNA polymerase III su 98.9 8E-09 1.7E-13 118.5 12.0 95 979-1115 99-193 (314)
297 PRK08058 DNA polymerase III su 98.9 7.7E-09 1.7E-13 119.6 11.8 70 419-516 110-179 (329)
298 smart00350 MCM minichromosome 98.9 4.7E-08 1E-12 119.5 19.0 140 419-572 300-479 (509)
299 TIGR02030 BchI-ChlI magnesium 98.9 2.2E-08 4.7E-13 115.8 15.0 155 419-596 131-305 (337)
300 PRK14087 dnaA chromosomal repl 98.9 8.2E-09 1.8E-13 124.0 11.9 138 419-600 206-348 (450)
301 PRK07471 DNA polymerase III su 98.9 5.5E-09 1.2E-13 122.2 9.9 70 1018-1115 142-211 (365)
302 PRK05022 anaerobic nitric oxid 98.9 1.9E-08 4.1E-13 123.0 14.8 131 419-576 281-419 (509)
303 COG0470 HolB ATPase involved i 98.9 1.6E-08 3.5E-13 115.8 13.3 60 419-506 109-168 (325)
304 PRK06620 hypothetical protein; 98.9 7.8E-09 1.7E-13 112.5 10.0 82 491-597 130-213 (214)
305 PRK05022 anaerobic nitric oxid 98.9 2E-08 4.2E-13 122.9 14.6 116 1017-1152 281-404 (509)
306 PRK11388 DNA-binding transcrip 98.9 1.1E-08 2.4E-13 128.4 12.6 130 419-575 416-552 (638)
307 PF01078 Mg_chelatase: Magnesi 98.9 2E-09 4.4E-14 115.0 5.0 44 183-242 3-46 (206)
308 PRK11331 5-methylcytosine-spec 98.8 3.8E-08 8.3E-13 116.2 15.9 61 178-255 171-233 (459)
309 KOG1942|consensus 98.8 1E-07 2.3E-12 104.3 17.5 103 1018-1149 297-399 (456)
310 PRK08727 hypothetical protein; 98.8 2.6E-08 5.7E-13 109.8 12.9 98 1017-1150 93-195 (233)
311 smart00763 AAA_PrkA PrkA AAA d 98.8 4E-08 8.8E-13 113.2 14.8 62 182-251 50-118 (361)
312 TIGR02329 propionate_PrpR prop 98.8 2.3E-08 4.9E-13 122.0 13.4 127 419-575 307-448 (526)
313 PRK15424 propionate catabolism 98.8 4.1E-08 8.9E-13 119.7 15.3 130 419-575 322-463 (538)
314 PF00308 Bac_DnaA: Bacterial d 98.8 4.8E-08 1E-12 106.7 14.3 116 419-575 97-214 (219)
315 cd00009 AAA The AAA+ (ATPases 98.8 2.1E-08 4.5E-13 99.2 10.4 55 186-254 1-58 (151)
316 PRK00149 dnaA chromosomal repl 98.8 1.1E-08 2.5E-13 123.2 10.2 98 1017-1150 211-313 (450)
317 COG0470 HolB ATPase involved i 98.8 2.1E-08 4.5E-13 114.9 11.8 64 1017-1108 109-172 (325)
318 TIGR00368 Mg chelatase-related 98.8 3E-08 6.5E-13 120.1 13.4 82 1017-1111 295-398 (499)
319 COG0606 Predicted ATPase with 98.8 3.8E-09 8.3E-14 123.4 5.5 44 183-242 179-222 (490)
320 PF07726 AAA_3: ATPase family 98.8 4E-09 8.6E-14 104.4 4.3 34 220-253 1-34 (131)
321 PRK11608 pspF phage shock prot 98.8 4.8E-08 1E-12 113.0 13.9 115 1017-1152 100-224 (326)
322 PRK10820 DNA-binding transcrip 98.8 4.6E-08 1E-12 119.9 14.3 131 419-576 298-436 (520)
323 TIGR02329 propionate_PrpR prop 98.8 3.5E-08 7.5E-13 120.4 13.1 105 1017-1144 307-419 (526)
324 cd00009 AAA The AAA+ (ATPases 98.8 5.1E-08 1.1E-12 96.5 11.8 54 785-852 2-58 (151)
325 PRK14088 dnaA chromosomal repl 98.8 1.4E-08 3E-13 121.9 9.1 134 419-600 194-332 (440)
326 PRK15429 formate hydrogenlyase 98.8 6.5E-08 1.4E-12 122.5 15.6 130 419-575 470-607 (686)
327 PF13177 DNA_pol3_delta2: DNA 98.8 2.2E-08 4.7E-13 104.4 8.9 61 419-507 102-162 (162)
328 smart00350 MCM minichromosome 98.8 9.2E-08 2E-12 116.9 15.7 122 1017-1152 300-453 (509)
329 KOG0990|consensus 98.8 2.7E-09 5.9E-14 118.5 2.2 94 1017-1151 131-224 (360)
330 TIGR00362 DnaA chromosomal rep 98.8 3.2E-08 6.8E-13 117.8 11.3 97 1018-1150 200-301 (405)
331 PRK10820 DNA-binding transcrip 98.7 5.6E-08 1.2E-12 119.1 13.5 115 1017-1152 298-421 (520)
332 PRK14086 dnaA chromosomal repl 98.7 2.6E-08 5.7E-13 121.6 10.4 136 419-599 377-514 (617)
333 PHA02244 ATPase-like protein 98.7 1.9E-07 4.1E-12 107.8 16.8 114 1017-1147 180-305 (383)
334 PRK13765 ATP-dependent proteas 98.7 7.3E-08 1.6E-12 119.4 13.2 115 419-553 226-354 (637)
335 PF01078 Mg_chelatase: Magnesi 98.7 5.9E-09 1.3E-13 111.5 3.2 45 781-841 3-47 (206)
336 PRK05707 DNA polymerase III su 98.7 6E-08 1.3E-12 112.0 11.5 92 384-516 84-175 (328)
337 COG1239 ChlI Mg-chelatase subu 98.7 3.7E-08 8.1E-13 113.9 9.5 118 1017-1152 144-283 (423)
338 COG2204 AtoC Response regulato 98.7 8.9E-08 1.9E-12 113.6 12.8 224 181-575 139-372 (464)
339 TIGR00602 rad24 checkpoint pro 98.7 1.5E-07 3.2E-12 116.5 15.0 55 184-247 85-139 (637)
340 KOG0743|consensus 98.7 7.5E-08 1.6E-12 112.0 11.6 87 419-516 286-380 (457)
341 PRK09862 putative ATP-dependen 98.7 9.4E-08 2E-12 115.5 12.8 81 419-512 294-394 (506)
342 PRK15424 propionate catabolism 98.7 1.2E-07 2.6E-12 115.7 13.4 103 1017-1142 322-432 (538)
343 PRK11388 DNA-binding transcrip 98.7 5.6E-08 1.2E-12 122.2 10.8 115 1017-1152 416-538 (638)
344 TIGR00602 rad24 checkpoint pro 98.7 5E-08 1.1E-12 120.6 9.8 67 765-845 73-139 (637)
345 PRK12422 chromosomal replicati 98.7 5E-08 1.1E-12 117.0 9.1 101 1017-1150 202-304 (445)
346 TIGR03015 pepcterm_ATPase puta 98.6 8E-07 1.7E-11 99.4 17.8 87 491-599 177-265 (269)
347 PF05673 DUF815: Protein of un 98.6 4.9E-07 1.1E-11 98.9 15.3 62 183-254 27-91 (249)
348 PRK10923 glnG nitrogen regulat 98.6 2E-07 4.3E-12 112.9 13.5 130 419-575 232-369 (469)
349 PRK09087 hypothetical protein; 98.6 8.9E-08 1.9E-12 105.1 9.2 87 489-600 134-222 (226)
350 TIGR02031 BchD-ChlD magnesium 98.6 3.9E-07 8.5E-12 113.0 15.5 135 419-571 84-232 (589)
351 TIGR02031 BchD-ChlD magnesium 98.6 1.6E-07 3.5E-12 116.4 12.0 123 1017-1153 84-220 (589)
352 PRK06620 hypothetical protein; 98.6 2.1E-07 4.6E-12 101.3 11.3 49 1089-1150 130-180 (214)
353 COG1474 CDC6 Cdc6-related prot 98.6 7.8E-07 1.7E-11 104.2 16.3 103 1018-1152 124-227 (366)
354 PF00158 Sigma54_activat: Sigm 98.6 2E-08 4.4E-13 105.2 2.7 58 185-254 1-61 (168)
355 PRK05642 DNA replication initi 98.6 1.6E-07 3.5E-12 103.7 9.9 99 1019-1150 99-199 (234)
356 PF00158 Sigma54_activat: Sigm 98.6 5.4E-08 1.2E-12 102.0 5.8 58 783-852 1-61 (168)
357 PF00308 Bac_DnaA: Bacterial d 98.6 1.5E-07 3.3E-12 102.8 9.5 100 1017-1149 97-198 (219)
358 PRK15429 formate hydrogenlyase 98.6 2.8E-07 6E-12 116.9 13.1 115 1017-1152 470-593 (686)
359 PTZ00111 DNA replication licen 98.6 8.1E-07 1.8E-11 112.1 16.9 68 175-242 442-516 (915)
360 PF13177 DNA_pol3_delta2: DNA 98.6 5.7E-08 1.2E-12 101.2 5.5 60 1018-1105 103-162 (162)
361 PRK13765 ATP-dependent proteas 98.6 1.2E-07 2.6E-12 117.5 8.9 115 1017-1151 226-354 (637)
362 PRK05707 DNA polymerase III su 98.6 3.1E-07 6.7E-12 106.2 11.4 70 1018-1115 107-176 (328)
363 COG2204 AtoC Response regulato 98.5 3.3E-07 7.2E-12 108.8 11.4 208 780-1152 140-358 (464)
364 PRK10923 glnG nitrogen regulat 98.5 3E-07 6.5E-12 111.4 11.3 115 1017-1152 232-355 (469)
365 PRK06871 DNA polymerase III su 98.5 5.5E-07 1.2E-11 103.7 12.6 92 384-516 85-176 (325)
366 COG3829 RocR Transcriptional r 98.5 5.8E-07 1.2E-11 106.8 12.6 129 419-575 340-477 (560)
367 PRK11331 5-methylcytosine-spec 98.5 7E-07 1.5E-11 105.7 13.2 56 781-852 175-232 (459)
368 TIGR02915 PEP_resp_reg putativ 98.5 8.4E-07 1.8E-11 106.7 13.4 130 419-575 233-370 (445)
369 PRK08769 DNA polymerase III su 98.5 7.1E-07 1.5E-11 102.5 11.9 92 384-516 91-182 (319)
370 PRK14088 dnaA chromosomal repl 98.5 1.5E-07 3.2E-12 113.0 6.6 97 1018-1150 195-296 (440)
371 PF07726 AAA_3: ATPase family 98.5 3E-08 6.4E-13 98.3 0.5 34 818-851 1-34 (131)
372 TIGR01818 ntrC nitrogen regula 98.5 1.4E-06 3E-11 105.4 14.6 130 419-575 228-365 (463)
373 PTZ00111 DNA replication licen 98.5 1.4E-06 3.1E-11 110.0 14.6 118 1017-1148 557-728 (915)
374 PRK14086 dnaA chromosomal repl 98.5 3.4E-07 7.5E-12 112.0 8.9 100 1017-1149 377-478 (617)
375 KOG1969|consensus 98.4 1.7E-06 3.7E-11 104.8 14.2 111 419-571 387-512 (877)
376 PRK09087 hypothetical protein; 98.4 3.8E-07 8.2E-12 100.2 8.1 93 1019-1150 89-186 (226)
377 PRK11361 acetoacetate metaboli 98.4 1.7E-06 3.6E-11 104.5 14.4 130 419-575 237-374 (457)
378 PRK06871 DNA polymerase III su 98.4 1.4E-06 3.1E-11 100.3 13.0 70 1018-1115 108-177 (325)
379 KOG2035|consensus 98.4 1E-06 2.2E-11 96.5 11.0 93 1017-1150 127-219 (351)
380 COG0606 Predicted ATPase with 98.4 9.1E-07 2E-11 103.9 11.2 45 781-841 179-223 (490)
381 PRK06964 DNA polymerase III su 98.4 1.4E-06 3E-11 101.1 12.0 92 384-516 110-201 (342)
382 KOG2170|consensus 98.4 3.6E-06 7.9E-11 93.5 14.6 64 172-242 71-134 (344)
383 PRK08769 DNA polymerase III su 98.4 1.2E-06 2.6E-11 100.7 11.3 70 1018-1115 114-183 (319)
384 KOG0990|consensus 98.4 7.8E-07 1.7E-11 99.4 9.2 108 419-575 131-238 (360)
385 PRK14087 dnaA chromosomal repl 98.4 6.8E-07 1.5E-11 107.6 9.5 101 1017-1151 206-311 (450)
386 PRK14700 recombination factor 98.4 2.6E-07 5.6E-12 103.6 5.5 119 473-613 9-137 (300)
387 PRK15115 response regulator Gl 98.4 1.7E-06 3.8E-11 104.0 13.1 129 419-575 228-365 (444)
388 KOG0743|consensus 98.4 1.8E-06 4E-11 100.7 12.5 38 816-853 235-272 (457)
389 PRK07993 DNA polymerase III su 98.4 1.9E-06 4E-11 100.0 12.3 90 385-515 87-176 (334)
390 PF05673 DUF815: Protein of un 98.4 3E-06 6.5E-11 92.9 12.9 60 781-850 27-89 (249)
391 KOG2035|consensus 98.4 4.7E-06 1E-10 91.5 14.1 92 419-551 127-218 (351)
392 PRK11361 acetoacetate metaboli 98.4 1.7E-06 3.7E-11 104.3 11.9 115 1017-1152 237-360 (457)
393 KOG1969|consensus 98.4 2.5E-06 5.4E-11 103.5 12.9 37 816-852 326-362 (877)
394 PRK15115 response regulator Gl 98.3 1.8E-06 4E-11 103.8 11.5 115 1017-1152 228-351 (444)
395 TIGR02915 PEP_resp_reg putativ 98.3 1.7E-06 3.8E-11 104.0 11.1 115 1017-1152 233-356 (445)
396 PRK06090 DNA polymerase III su 98.3 4.2E-06 9E-11 96.2 13.5 70 419-516 108-177 (319)
397 COG5271 MDN1 AAA ATPase contai 98.3 1.3E-05 2.8E-10 102.4 18.0 36 219-254 1544-1579(4600)
398 PRK09862 putative ATP-dependen 98.3 8.2E-07 1.8E-11 107.5 7.7 82 1017-1111 294-395 (506)
399 TIGR03015 pepcterm_ATPase puta 98.3 8.9E-06 1.9E-10 91.0 15.5 52 1089-1151 177-230 (269)
400 COG3604 FhlA Transcriptional r 98.3 4.2E-06 9E-11 98.5 12.3 219 184-575 224-454 (550)
401 COG3829 RocR Transcriptional r 98.3 2E-06 4.4E-11 102.3 8.9 60 781-852 245-307 (560)
402 TIGR01818 ntrC nitrogen regula 98.3 4.3E-06 9.3E-11 101.1 12.0 115 1017-1152 228-351 (463)
403 PRK06964 DNA polymerase III su 98.2 4.1E-06 9E-11 97.1 10.9 93 982-1115 110-202 (342)
404 COG1239 ChlI Mg-chelatase subu 98.2 1.1E-05 2.5E-10 93.7 14.0 118 419-554 144-283 (423)
405 PRK06090 DNA polymerase III su 98.2 1E-05 2.2E-10 93.0 13.6 70 1018-1115 109-178 (319)
406 PRK07993 DNA polymerase III su 98.2 9.7E-06 2.1E-10 94.1 13.0 70 1018-1115 109-178 (334)
407 PRK08699 DNA polymerase III su 98.2 5.2E-06 1.1E-10 96.0 10.3 92 384-516 91-182 (325)
408 PF06309 Torsin: Torsin; Inte 98.2 3.3E-06 7.1E-11 83.7 7.0 64 172-242 14-77 (127)
409 PRK10365 transcriptional regul 98.2 5.8E-06 1.2E-10 99.3 10.4 130 419-575 233-370 (441)
410 PF10431 ClpB_D2-small: C-term 98.1 8.4E-06 1.8E-10 75.0 7.9 66 506-580 1-66 (81)
411 COG0593 DnaA ATPase involved i 98.1 1.5E-05 3.3E-10 93.6 11.8 138 420-605 176-318 (408)
412 KOG2680|consensus 98.1 1.6E-05 3.5E-10 87.8 10.9 67 181-256 38-106 (454)
413 COG3604 FhlA Transcriptional r 98.1 1.3E-05 2.9E-10 94.4 10.6 205 781-1153 223-441 (550)
414 smart00382 AAA ATPases associa 98.1 1.2E-05 2.6E-10 78.5 8.9 37 219-255 3-42 (148)
415 smart00382 AAA ATPases associa 98.1 9.9E-06 2.1E-10 79.1 8.2 38 816-853 2-42 (148)
416 KOG2227|consensus 98.1 0.00013 2.8E-09 85.6 18.0 118 420-576 257-378 (529)
417 KOG2680|consensus 98.1 5.5E-05 1.2E-09 83.8 14.0 82 780-873 39-122 (454)
418 PRK08699 DNA polymerase III su 98.0 1.6E-05 3.4E-10 92.0 10.2 93 982-1115 91-183 (325)
419 PRK13406 bchD magnesium chelat 98.0 8.9E-06 1.9E-10 100.5 8.3 112 1017-1152 93-211 (584)
420 COG1241 MCM2 Predicted ATPase 98.0 5E-05 1.1E-09 94.3 13.9 122 419-554 383-541 (682)
421 PRK10365 transcriptional regul 98.0 2.6E-05 5.7E-10 93.6 11.3 116 1017-1152 233-356 (441)
422 KOG1514|consensus 98.0 7.9E-05 1.7E-09 90.8 14.5 119 419-577 508-628 (767)
423 PF13173 AAA_14: AAA domain 98.0 1.5E-05 3.3E-10 79.6 7.1 35 219-253 3-39 (128)
424 PF14532 Sigma54_activ_2: Sigm 98.0 4.1E-06 8.9E-11 84.8 2.7 66 1017-1104 69-138 (138)
425 PF14532 Sigma54_activ_2: Sigm 97.9 8.3E-06 1.8E-10 82.5 4.5 56 186-253 1-59 (138)
426 PF00493 MCM: MCM2/3/5 family 97.9 4.7E-06 1E-10 96.7 3.0 140 419-572 121-301 (331)
427 PF06309 Torsin: Torsin; Inte 97.9 2.7E-05 5.9E-10 77.3 7.8 64 770-840 14-77 (127)
428 PRK05917 DNA polymerase III su 97.9 5.6E-05 1.2E-09 85.6 11.4 81 385-506 74-154 (290)
429 PRK07276 DNA polymerase III su 97.9 7.7E-05 1.7E-09 84.7 11.9 90 384-515 82-171 (290)
430 COG2607 Predicted ATPase (AAA+ 97.9 0.00028 6E-09 76.7 15.3 61 184-254 61-124 (287)
431 PRK13406 bchD magnesium chelat 97.9 9.5E-05 2.1E-09 91.6 13.1 151 419-597 93-247 (584)
432 PF01637 Arch_ATPase: Archaeal 97.8 0.00018 3.9E-09 77.7 13.5 103 1018-1149 119-224 (234)
433 PF01637 Arch_ATPase: Archaeal 97.8 0.00015 3.3E-09 78.3 11.7 103 420-551 119-224 (234)
434 PF13173 AAA_14: AAA domain 97.8 4.5E-05 9.8E-10 76.2 6.6 35 817-851 3-39 (128)
435 PRK07132 DNA polymerase III su 97.7 0.00034 7.3E-09 80.1 13.4 70 419-516 90-159 (299)
436 PF00493 MCM: MCM2/3/5 family 97.7 2.5E-05 5.5E-10 90.7 4.4 117 1017-1148 121-273 (331)
437 PRK07132 DNA polymerase III su 97.7 0.00035 7.5E-09 80.0 12.9 71 1017-1115 90-160 (299)
438 KOG2170|consensus 97.7 0.0011 2.4E-08 74.3 16.2 64 770-840 71-134 (344)
439 PRK07276 DNA polymerase III su 97.7 0.00027 5.9E-09 80.3 11.6 68 1018-1114 105-172 (290)
440 PF05621 TniB: Bacterial TniB 97.7 0.0012 2.7E-08 74.7 16.7 58 177-242 28-85 (302)
441 COG5271 MDN1 AAA ATPase contai 97.6 0.00093 2E-08 86.5 16.0 38 219-256 889-926 (4600)
442 PRK05917 DNA polymerase III su 97.6 0.00038 8.3E-09 79.0 11.7 60 1018-1105 96-155 (290)
443 PF03215 Rad17: Rad17 cell cyc 97.6 0.00037 7.9E-09 85.3 12.3 123 419-573 132-267 (519)
444 COG0593 DnaA ATPase involved i 97.6 0.00048 1E-08 81.3 12.1 95 1019-1149 177-276 (408)
445 COG1241 MCM2 Predicted ATPase 97.6 0.00025 5.3E-09 88.3 9.9 118 1017-1148 383-537 (682)
446 PRK12377 putative replication 97.5 0.00015 3.2E-09 80.9 7.0 24 219-242 102-125 (248)
447 PRK05818 DNA polymerase III su 97.5 0.0005 1.1E-08 76.6 10.9 65 419-511 88-152 (261)
448 KOG0480|consensus 97.5 0.0017 3.8E-08 78.5 15.7 69 174-245 336-405 (764)
449 PRK15455 PrkA family serine pr 97.5 0.00015 3.3E-09 87.9 6.8 62 184-253 77-139 (644)
450 KOG2227|consensus 97.5 0.003 6.6E-08 74.4 17.0 97 1018-1151 257-360 (529)
451 KOG0478|consensus 97.5 0.00067 1.4E-08 82.5 11.4 122 419-554 526-676 (804)
452 PF13401 AAA_22: AAA domain; P 97.4 0.00047 1E-08 68.2 8.4 36 816-851 4-47 (131)
453 PRK12377 putative replication 97.4 0.00021 4.6E-09 79.6 6.5 24 817-840 102-125 (248)
454 PF05621 TniB: Bacterial TniB 97.4 0.0012 2.7E-08 74.8 12.2 53 780-840 33-85 (302)
455 PRK15455 PrkA family serine pr 97.4 0.00027 5.8E-09 85.9 7.2 62 781-850 76-138 (644)
456 PRK14700 recombination factor 97.4 0.00012 2.6E-09 82.5 3.8 86 1051-1158 1-86 (300)
457 COG4650 RtcR Sigma54-dependent 97.4 0.00057 1.2E-08 75.5 8.8 78 777-873 180-263 (531)
458 COG2607 Predicted ATPase (AAA+ 97.3 0.0027 5.8E-08 69.3 13.2 59 781-849 60-121 (287)
459 PF13401 AAA_22: AAA domain; P 97.3 0.00057 1.2E-08 67.6 7.4 36 218-253 4-47 (131)
460 PRK08485 DNA polymerase III su 97.3 0.00083 1.8E-08 71.7 8.2 89 983-1114 36-136 (206)
461 PRK08118 topology modulation p 97.3 0.00036 7.7E-09 73.3 5.4 44 219-263 2-45 (167)
462 PRK08118 topology modulation p 97.2 0.0004 8.6E-09 72.9 5.5 45 817-862 2-46 (167)
463 PF13207 AAA_17: AAA domain; P 97.2 0.00026 5.6E-09 69.3 3.8 31 819-849 2-32 (121)
464 PRK08181 transposase; Validate 97.2 0.00035 7.6E-09 78.8 5.3 24 219-242 107-130 (269)
465 PRK07952 DNA replication prote 97.2 0.00094 2E-08 74.4 8.5 35 219-253 100-137 (244)
466 PF13207 AAA_17: AAA domain; P 97.2 0.00023 5E-09 69.7 3.3 39 221-260 2-40 (121)
467 KOG1514|consensus 97.2 0.0053 1.1E-07 75.5 14.9 102 1017-1153 508-611 (767)
468 KOG0478|consensus 97.2 0.002 4.3E-08 78.6 11.1 120 1017-1150 526-674 (804)
469 COG4650 RtcR Sigma54-dependent 97.2 0.0022 4.7E-08 71.1 10.5 78 178-274 179-262 (531)
470 PRK07261 topology modulation p 97.1 0.00068 1.5E-08 71.4 5.6 43 220-263 2-44 (171)
471 PRK08116 hypothetical protein; 97.1 0.0011 2.3E-08 75.0 7.5 35 219-253 115-152 (268)
472 PRK06526 transposase; Provisio 97.1 0.0003 6.4E-09 78.8 2.9 24 219-242 99-122 (254)
473 PF10923 DUF2791: P-loop Domai 97.1 0.11 2.4E-06 62.1 24.1 121 1020-1164 242-380 (416)
474 PRK00131 aroK shikimate kinase 97.0 0.00057 1.2E-08 71.0 4.4 32 816-847 4-35 (175)
475 PRK00131 aroK shikimate kinase 97.0 0.00056 1.2E-08 71.0 4.2 33 218-250 4-36 (175)
476 PRK07261 topology modulation p 97.0 0.0011 2.3E-08 69.9 6.0 46 818-864 2-47 (171)
477 PF12775 AAA_7: P-loop contain 97.0 0.0025 5.5E-08 72.2 9.4 89 419-516 100-190 (272)
478 COG1618 Predicted nucleotide k 97.0 0.0016 3.5E-08 67.1 6.9 26 218-243 5-30 (179)
479 COG0703 AroK Shikimate kinase 97.0 0.00093 2E-08 70.1 5.2 49 219-274 3-51 (172)
480 PF10923 DUF2791: P-loop Domai 97.0 0.066 1.4E-06 63.9 21.1 130 421-574 241-391 (416)
481 KOG0480|consensus 96.9 0.00079 1.7E-08 81.4 5.0 72 769-843 333-405 (764)
482 COG0703 AroK Shikimate kinase 96.9 0.0011 2.5E-08 69.4 5.4 70 817-905 3-72 (172)
483 KOG1970|consensus 96.9 0.022 4.8E-07 68.6 16.5 45 219-263 111-156 (634)
484 PRK05818 DNA polymerase III su 96.9 0.0026 5.6E-08 71.0 8.0 59 1018-1104 89-147 (261)
485 PRK13947 shikimate kinase; Pro 96.9 0.0009 1.9E-08 69.8 4.1 32 818-849 3-34 (171)
486 PRK13947 shikimate kinase; Pro 96.8 0.00086 1.9E-08 69.9 3.8 32 220-251 3-34 (171)
487 PRK08485 DNA polymerase III su 96.8 0.0098 2.1E-07 63.8 11.1 128 369-553 17-159 (206)
488 PRK03839 putative kinase; Prov 96.8 0.0011 2.3E-08 70.1 3.9 31 818-848 2-32 (180)
489 PRK03839 putative kinase; Prov 96.8 0.001 2.2E-08 70.3 3.6 31 220-250 2-32 (180)
490 PRK00625 shikimate kinase; Pro 96.8 0.001 2.3E-08 70.2 3.8 32 220-251 2-33 (173)
491 COG0529 CysC Adenylylsulfate k 96.8 0.004 8.7E-08 65.2 7.8 58 816-873 23-88 (197)
492 PRK00625 shikimate kinase; Pro 96.8 0.0012 2.5E-08 69.9 4.0 31 818-848 2-32 (173)
493 cd00464 SK Shikimate kinase (S 96.7 0.0012 2.7E-08 67.2 3.9 31 818-848 1-31 (154)
494 COG1484 DnaC DNA replication p 96.7 0.0017 3.8E-08 72.7 5.3 36 218-253 105-143 (254)
495 cd00464 SK Shikimate kinase (S 96.7 0.0012 2.6E-08 67.3 3.5 31 220-250 1-31 (154)
496 PF03215 Rad17: Rad17 cell cyc 96.6 0.0018 3.9E-08 79.4 5.0 65 768-846 11-75 (519)
497 PF13671 AAA_33: AAA domain; P 96.6 0.0011 2.4E-08 66.7 2.4 31 819-851 2-32 (143)
498 PRK13949 shikimate kinase; Pro 96.6 0.0017 3.6E-08 68.3 3.7 33 219-251 2-34 (169)
499 PRK13949 shikimate kinase; Pro 96.6 0.0018 3.9E-08 68.2 3.9 32 817-848 2-33 (169)
500 PF01583 APS_kinase: Adenylyls 96.6 0.0059 1.3E-07 63.4 7.4 95 815-946 1-109 (156)
No 1
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-94 Score=778.53 Aligned_cols=436 Identities=64% Similarity=1.012 Sum_probs=418.2
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.++...|+++|+||++||+.++.|++++|||..+...++....|+++|+.||||+|||++||.||+..+.||+.+.
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCC-cCcchhhHHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNN-ENNNISTRQIF 329 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~ 329 (1165)
++.|++.||||.+.++++++|++.++...++...++++..+++.|+++++|.|+|+.++ .-++.+ +.+.+.+++.|
T Consensus 83 ATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~---~~g~~~~~~~~~~~r~~~ 159 (444)
T COG1220 83 ATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKN---FWGQSENKQESSATREKF 159 (444)
T ss_pred eeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCcCcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997532 112222 23568899999
Q ss_pred HHHhhcCCCCCcEEEEEecCC-CCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhH
Q psy2392 330 RKRLREGALDNKEIEIELNDT-GPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408 (1165)
Q Consensus 330 ~~~~~~g~l~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1165)
|+.|++|.|||++|+|++... .+.++++++|||++|+.++..||++++++|++.|+++||+|+++|.++||++++|.++
T Consensus 160 rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~ 239 (444)
T COG1220 160 RKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEE 239 (444)
T ss_pred HHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHH
Confidence 999999999999999999885 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC
Q psy2392 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD 488 (1165)
Q Consensus 409 ~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~ 488 (1165)
+..+|+..+++.|||||||||||+.+... +++|+|++||||+|||++||++|+||||+|+|+|||||||||||.++|||
T Consensus 240 i~~eAi~~aE~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD 318 (444)
T COG1220 240 IKQEAIDAAEQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD 318 (444)
T ss_pred HHHHHHHHHHhcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh
Confidence 99999999999999999999999998763 44599999999999999999999999999999999999999999999999
Q ss_pred CchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 489 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 489 l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
|+||||||||++|+|++|+.+||++||++|++.|++||++||+++|+.|.|+++|++.||++|+++|...+|+|||||||
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT 398 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT 398 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 569 AMEKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 569 ~ie~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
++|++|+++||++|+.. ++||.+||++.+++++.+.||||||
T Consensus 399 vlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsryI 443 (444)
T COG1220 399 VLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSRFI 443 (444)
T ss_pred HHHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHHhcccchhhhh
Confidence 99999999999999986 9999999999999999999999997
No 2
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-91 Score=760.25 Aligned_cols=390 Identities=64% Similarity=1.009 Sum_probs=371.9
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++...|+++|+||++||+.+..+++++|+|..+...++....|+|+|++||+|+|||++||.||+..+.||+.+.
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 57899999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc-ccchhhHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE-NNNISTRQIF 927 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~-~~~~~~r~~~ 927 (1165)
++.|++.||||.+.++++|+|++.+++.+++.....++....+.|+.|+++.|++...+ ..++.++ .+...+|+.|
T Consensus 83 ATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~---~~g~~~~~~~~~~~r~~~ 159 (444)
T COG1220 83 ATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKN---FWGQSENKQESSATREKF 159 (444)
T ss_pred eeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCcCcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997321 0111121 2467899999
Q ss_pred HHhhccCCCCCeEEEEEecCC-CCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 928 RKRLREGALDNKEIEIELNDT-GPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 928 ~~~l~~g~ld~r~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
|+.||+|.|||+.|+|++.+. .+.++|++||||++|..+|.+||+.++++|+|.|++|||+|+++|.++|++|++|++.
T Consensus 160 rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~ 239 (444)
T COG1220 160 RKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEE 239 (444)
T ss_pred HHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHH
Confidence 999999999999999999996 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD 1086 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d 1086 (1165)
+.++|+..++++|||||||||||++++++ +++|+|+|||||||||++||++|+||||+++|+|||||||||||.+||||
T Consensus 240 i~~eAi~~aE~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD 318 (444)
T COG1220 240 IKQEAIDAAEQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD 318 (444)
T ss_pred HHHHHHHHHHhcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh
Confidence 99999999999999999999999999773 44599999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeecc
Q psy2392 1087 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVII 1162 (1165)
Q Consensus 1087 l~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar 1162 (1165)
|+|||||||||||+|++||.+||++||++|++++++||++||+||||.|.||||||+.||++||++|..++|||||
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=3.3e-80 Score=706.75 Aligned_cols=436 Identities=61% Similarity=0.984 Sum_probs=406.5
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++|.++.+.|++.|+||++|++.+..+++++|+|.++...++....|+++||+||||||||++|++||+.++.+|+.+|+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 36899999999999999999999999999999999887776666678999999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
+.|+++||+|.+.+..+++++..++...+.+.+.+.+..+.+.|++++++.|++...+. +.. -..+.....+++.|++
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~-~~~-~~~~~~~~~~r~~~~~ 158 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQ-WGQ-TEQQQEPESAREAFRK 158 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCcccc-ccc-cccccchHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999853221 000 0001122367999999
Q ss_pred HhhcCCCCCcEEEEEecCCC-CcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHH
Q psy2392 332 RLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 410 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1165)
++++|.|||++|+|+++... ++++.++++|+++|..++..|++++.+++++.++|+|+||++++.++|++++++++.++
T Consensus 159 ~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~ 238 (441)
T TIGR00390 159 KLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIK 238 (441)
T ss_pred HHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999997754 67888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 411 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 411 ~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
++|++.+++.|||||||||||+.+. .+.++|+|++|||++|||++||++|+++||.|+|+||||||+|||+..+|+||+
T Consensus 239 ~~a~~~~e~~GIVfiDEiDKIa~~~-~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlI 317 (441)
T TIGR00390 239 QEAIDAVEQSGIIFIDEIDKIAKKG-ESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLI 317 (441)
T ss_pred HHHHHHHHcCCEEEEEchhhhcccC-CCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhcc
Confidence 9999999999999999999999876 345899999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|||+||||++|+|++|+.++|++||++|++++++||+++|+++|++|.|+++|+++||+.|+.+|...+|+|||+|++++
T Consensus 318 PEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrtil 397 (441)
T TIGR00390 318 PELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVL 397 (441)
T ss_pred HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 571 EKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
|+++++++|++|+.. ++||.+||++.+..++++.||||||
T Consensus 398 E~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~~~DlsryI 440 (441)
T TIGR00390 398 ERLLEDISFEAPDLSGQNITIDADYVSKKLGALVADEDLSRFI 440 (441)
T ss_pred HHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHhcCCccccc
Confidence 999999999999864 8999999999999999999999997
No 4
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.7e-79 Score=701.19 Aligned_cols=436 Identities=65% Similarity=1.021 Sum_probs=407.8
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++|.++.+.|++.|+||++|++.++.+++.+|+|.++..+.+....|+++||+||||||||++|++||+.++.+|+++|+
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 57999999999999999999999999999999999888777766677999999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
++|+++||+|.+.+..+++++..++..++++....++..+.+.|++++++.|++..... ....+.+.....+++.|++
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~--~~~~~~~~~~~~~r~~~~~ 161 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNN--WGEEEEKEEISATRQKFRK 161 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--ccccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999843210 0000111223467999999
Q ss_pred HhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHH
Q psy2392 332 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1165)
++++|.|||++|+|++++..+++++++++|++++..++..|++++.+++++.++|+|+||++++.++|++++++++++++
T Consensus 162 ~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~ 241 (443)
T PRK05201 162 KLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQ 241 (443)
T ss_pred HHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 99999999999999998865667777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch
Q psy2392 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 491 (1165)
Q Consensus 412 ~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p 491 (1165)
+|+..+++.|||||||||||+.+..+ ++.|+|++|||++|||++||++|+++|+.|+|+||||||+|||+..+|+||+|
T Consensus 242 ~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIP 320 (443)
T PRK05201 242 EAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIP 320 (443)
T ss_pred HHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccH
Confidence 99999999999999999999988654 58899999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
||+||||++|+|++|++++|++||++|++++++||+++|+++|++|.|+++|+++||+.|+..|...+++|||+|++++|
T Consensus 321 El~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E 400 (443)
T PRK05201 321 ELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVME 400 (443)
T ss_pred HHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 572 KLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 572 ~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+++++++|++|+.. +.||.++|+..+.+++.+.||+|||
T Consensus 401 ~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~~~DlskyI 442 (443)
T PRK05201 401 KLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVKDEDLSRYI 442 (443)
T ss_pred HHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHhcCCccccc
Confidence 99999999999865 8999999999999999999999997
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=8e-79 Score=695.40 Aligned_cols=388 Identities=62% Similarity=0.989 Sum_probs=361.9
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
++|.++.+.|+++|+||++|++.+..++..+|++.++....+....|+++||+||||||||++|+++|+.++.||+.+|+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 47899999999999999999999999999999999887766666667999999999999999999999999999999999
Q ss_pred CCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccC--C-cccchhhHHH
Q psy2392 850 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFN--N-ENNNISTRQI 926 (1165)
Q Consensus 850 se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~--~-~~~~~~~r~~ 926 (1165)
++|++.||+|.+.+..++++|..|+...+.+.+++++......|+.|++++||+.... .++ + ..+...+|+.
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~-----~~~~~~~~~~~~~~r~~ 155 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKN-----QWGQTEQQQEPESAREA 155 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccc-----cccccccccchHHHHHH
Confidence 9999999999988899999999999998889999999999999999999999985211 111 1 1123467999
Q ss_pred HHHhhccCCCCCeEEEEEecCCC-CcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
|+++|+.|.|||++|+|++++.. +.+++++++||++|...+..|++.+.+++++++++||+||+++|.++|+++++|++
T Consensus 156 ~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~ 235 (441)
T TIGR00390 156 FRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPE 235 (441)
T ss_pred HHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChH
Confidence 99999999999999999998764 45888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~ 1085 (1165)
.|.+.|++++++.|||||||||||++++. +++.|+|++|||++|||++||++|+||||.++|+||||||+||||..+|+
T Consensus 236 ~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~ 314 (441)
T TIGR00390 236 EIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPS 314 (441)
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChh
Confidence 99999999999999999999999998863 46899999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1086 DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1086 dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
||+|||+||||++|+|++|+++||++||++|+|++++||+++|+++||+|.||++|+++||+.|+++|+.++|||||-
T Consensus 315 DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~ 392 (441)
T TIGR00390 315 DLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARR 392 (441)
T ss_pred hccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=9e-79 Score=695.30 Aligned_cols=392 Identities=65% Similarity=1.012 Sum_probs=364.9
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++.+.|++.|+||++|++.+..++..+|++.++..+.+....|+++||+||||||||++|++||+.++.||+.+|
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 46799999999999999999999999999999999988877766666799999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
+++|+++||+|.+.+..++++|..|+..++++....++....+.|+.|+++.|++..... ......+.+...+|+.|+
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~--~~~~~~~~~~~~~r~~~~ 160 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNN--WGEEEEKEEISATRQKFR 160 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--ccccccchhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999842110 000011122446799999
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
++|+.|.|||++|+|++++..+.+++++++||+++...+..|++.+.+++++++++|||||+++|.++|+++++|.++|.
T Consensus 161 ~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~ 240 (443)
T PRK05201 161 KKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIK 240 (443)
T ss_pred HHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999999986666888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
+.|+++++++|||||||||||++++++ ++.|+|++|||++|||++||++|+||||.++|+||||||+||||.++|+||+
T Consensus 241 ~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlI 319 (443)
T PRK05201 241 QEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLI 319 (443)
T ss_pred HHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhcc
Confidence 999999999999999999999998654 6889999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
|||+||||++|+|++|+++||++||++|++++++||+++|+++||+|.||++|+++||+.|+++|+..+|||||-
T Consensus 320 PEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~ 394 (443)
T PRK05201 320 PELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARR 394 (443)
T ss_pred HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-72 Score=676.91 Aligned_cols=396 Identities=24% Similarity=0.339 Sum_probs=344.3
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEK 86 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~ 86 (1165)
|||-..++.||++||| |||||+|+||||||++|||||||||+||+|| || +|. |.|||+++|+.||+|++++||.
T Consensus 276 GAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RR--FQ-~V~-V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 276 GAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERR--FQ-KVL-VDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred CCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhc--Cc-eee-CCCCCHHHHHHHHHHHHHHHHH
Confidence 4554322379999999 9999999999999999999999999999999 99 788 9999999999999999999999
Q ss_pred Hhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCcccccccccc-------c-------
Q psy2392 87 HQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGS-------G------- 145 (1165)
Q Consensus 87 ~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~-------~------- 145 (1165)
||+ +||++||+||+|||++|+||||| ++|+|||+.++... .|.....++..+.++.. .
T Consensus 352 hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~ 430 (786)
T COG0542 352 HHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKK 430 (786)
T ss_pred ccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999 99999999999999999999985 59999999998543 34332233332222110 0
Q ss_pred ----------------------chhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhh
Q psy2392 146 ----------------------GIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNR 202 (1165)
Q Consensus 146 ----------------------~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~ 202 (1165)
.+....+|.++++||++|...+.+++ ..+.++++.|.+.|+||++|+..|..+|+..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra 510 (786)
T COG0542 431 LIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA 510 (786)
T ss_pred HHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH
Confidence 01123489999999999999887754 8899999999999999999999999999988
Q ss_pred hhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC---CCceEEecccccc-----------ccccccchhhHH
Q psy2392 203 WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFTE-----------VGYVGRDVDTII 268 (1165)
Q Consensus 203 ~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~s~~~~-----------~GyvG~~~~~~l 268 (1165)
|+|+.++.+|. ++|||.||||||||+||++||..+. .+++++|||+|++ ||||||++++.+
T Consensus 511 --RaGL~dp~rPi---gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~L 585 (786)
T COG0542 511 --RAGLGDPNRPI---GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL 585 (786)
T ss_pred --hcCCCCCCCCc---eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccch
Confidence 99999999987 8999999999999999999999994 8999999999998 799999999988
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEec
Q psy2392 269 RDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 348 (1165)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~ 348 (1165)
++.++.
T Consensus 586 TEaVRr-------------------------------------------------------------------------- 591 (786)
T COG0542 586 TEAVRR-------------------------------------------------------------------------- 591 (786)
T ss_pred hHhhhc--------------------------------------------------------------------------
Confidence 888866
Q ss_pred CCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecc
Q psy2392 349 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEI 428 (1165)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEi 428 (1165)
.|++||++|||
T Consensus 592 ---------------------------------------------------------------------~PySViLlDEI 602 (786)
T COG0542 592 ---------------------------------------------------------------------KPYSVILLDEI 602 (786)
T ss_pred ---------------------------------------------------------------------CCCeEEEechh
Confidence 27999999999
Q ss_pred hhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC----------CC-----------
Q psy2392 429 DKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA----------KP----------- 486 (1165)
Q Consensus 429 dki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~----------~p----------- 486 (1165)
+|.|+. |.+.||+++|.+..+...| .|++.|.++|+|.+.... .+
T Consensus 603 EKAHpd-------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 603 EKAHPD-------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred hhcCHH-------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH
Confidence 999998 8889999999988887655 899999999998654310 01
Q ss_pred ---CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCc
Q psy2392 487 ---SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563 (1165)
Q Consensus 487 ---~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GA 563 (1165)
..|.|||+||++.+|.|++|+++++.+|+ ..++.+....|..+++.|.+++++.++|++.+|+ +.+||
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv----~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd-----~~~GA 740 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIV----DLQLNRLAKRLAERGITLELSDEAKDFLAEKGYD-----PEYGA 740 (786)
T ss_pred HHHhhCCHHHHhhcccEEeccCCCHHHHHHHH----HHHHHHHHHHHHhCCceEEECHHHHHHHHHhccC-----CCcCc
Confidence 13899999999999999999999999999 6788888888888899999999999999999999 69999
Q ss_pred chhHHHHHHHHHHhhc
Q psy2392 564 RRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 564 R~l~~~ie~~l~~~~~ 579 (1165)
|+|+++|++.+++...
T Consensus 741 RpL~R~Iq~~i~~~La 756 (786)
T COG0542 741 RPLRRAIQQEIEDPLA 756 (786)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999998877643
No 8
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-63 Score=605.54 Aligned_cols=383 Identities=24% Similarity=0.342 Sum_probs=306.7
Q ss_pred eeeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHH
Q psy2392 622 LSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVEL 696 (1165)
Q Consensus 622 ~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~L 696 (1165)
.+||||+++||||||++|||+|||||+||+|| || +|. |.|||.++|+.||+|++++||.||+ +||.+||+|
T Consensus 293 PaLARGeL~~IGATT~~EYRk~iEKD~AL~RR--FQ-~V~-V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~L 368 (786)
T COG0542 293 PALARGELRCIGATTLDEYRKYIEKDAALERR--FQ-KVL-VDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTL 368 (786)
T ss_pred HHHhcCCeEEEEeccHHHHHHHhhhchHHHhc--Cc-eee-CCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHH
Confidence 36889999999999999999999999999999 99 898 9999999999999999999999999 999999999
Q ss_pred HHHHhcccccchH--HHHhhhhhhhhhhhhcCCCCccCcccc----------------------cc--------------
Q psy2392 697 AKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENG----------------------IG-------------- 738 (1165)
Q Consensus 697 S~ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~----------------------i~-------------- 738 (1165)
|+|||++|+|||| |++|++|++.++... .+....+.+.. +.
T Consensus 369 S~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~ 447 (786)
T COG0542 369 SDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELE 447 (786)
T ss_pred HHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999996 559999998887432 11110000000 00
Q ss_pred -ccccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCC
Q psy2392 739 -AIGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP 816 (1165)
Q Consensus 739 -~i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~ 816 (1165)
.+.. ++....++.+++.||++|...+.. +.....++++.|.+.|+||++|++.+..+|... |.|+.++.+| .
T Consensus 448 ~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--RaGL~dp~rP---i 521 (786)
T COG0542 448 KELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--RAGLGDPNRP---I 521 (786)
T ss_pred HHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--hcCCCCCCCC---c
Confidence 0001 134456899999999999998754 788899999999999999999999999999987 9999998887 5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC---CCeEEEecCCccc-----------ccccccChhhHHHHHHHHHHhhhhhhHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEI 882 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~~~~~~~ 882 (1165)
++|||.||||||||+||++||..+. .+++++|||+|++ ||||||++++.+++. ++.+||
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa-------VRr~Py 594 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-------VRRKPY 594 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHh-------hhcCCC
Confidence 8999999999999999999999995 8899999999997 699999999999886 456799
Q ss_pred HHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC-CCeEEEEEecCCCCcccccCCcchH
Q psy2392 883 NKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL-DNKEIEIELNDTGPHMEIMSPPGME 961 (1165)
Q Consensus 883 ~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l-d~r~v~i~~~~~~~~~~~~~~~~~~ 961 (1165)
++++++++|+||++|+|+|||. |++|+| |+.--+|++
T Consensus 595 SViLlDEIEKAHpdV~nilLQV--------------------------lDdGrLTD~~Gr~VdF---------------- 632 (786)
T COG0542 595 SVILLDEIEKAHPDVFNLLLQV--------------------------LDDGRLTDGQGRTVDF---------------- 632 (786)
T ss_pred eEEEechhhhcCHHHHHHHHHH--------------------------hcCCeeecCCCCEEec----------------
Confidence 9999999999999999999884 788988 332222222
Q ss_pred HHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCC-----
Q psy2392 962 EMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN----- 1036 (1165)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~----- 1036 (1165)
.+.||+. +++-++.
T Consensus 633 -------------------------------------------------------rNtiIIm------TSN~Gs~~i~~~ 651 (786)
T COG0542 633 -------------------------------------------------------RNTIIIM------TSNAGSEEILRD 651 (786)
T ss_pred -------------------------------------------------------ceeEEEE------ecccchHHHHhh
Confidence 2223332 1110000
Q ss_pred C--CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1037 N--NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1037 ~--~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
. ......+..+..+.+.+- ..|.|||++|+.-+|.|.+|+++++.+|++
T Consensus 652 ~~~~~~~~~~~~~~~v~~~l~-----------------------------~~F~PEFLNRid~II~F~~L~~~~l~~Iv~ 702 (786)
T COG0542 652 ADGDDFADKEALKEAVMEELK-----------------------------KHFRPEFLNRIDEIIPFNPLSKEVLERIVD 702 (786)
T ss_pred ccccccchhhhHHHHHHHHHH-----------------------------hhCCHHHHhhcccEEeccCCCHHHHHHHHH
Confidence 0 000011112222222221 157899999999888999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
.++.+....|...|+.|.|++++.++|++.+|+- ..|||.
T Consensus 703 ----~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~-----~~GARp 742 (786)
T COG0542 703 ----LQLNRLAKRLAERGITLELSDEAKDFLAEKGYDP-----EYGARP 742 (786)
T ss_pred ----HHHHHHHHHHHhCCceEEECHHHHHHHHHhccCC-----CcCchH
Confidence 8888888889988999999999999999999997 666663
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-54 Score=537.15 Aligned_cols=383 Identities=20% Similarity=0.322 Sum_probs=320.1
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEK 86 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~ 86 (1165)
+++.+..+.+|.+|+| +|+||+|+||||||++||++|+++|+||.|| || +|. |+|||.++++.||++++++||.
T Consensus 292 g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rR--Fq-~I~-v~ePs~~~~~~IL~~~~~~ye~ 367 (758)
T PRK11034 292 GAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhh--Cc-EEE-eCCCCHHHHHHHHHHHHHHhhh
Confidence 4444344568999999 9999999999999999999999999999999 99 665 9999999999999999999999
Q ss_pred Hhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhc
Q psy2392 87 HQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQEN 159 (1165)
Q Consensus 87 ~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~ 159 (1165)
||+ +|+++|++||+|||++|+||||+ ++|+||++.+.. +.. .. ...+....+++++++|
T Consensus 368 ~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~----~~~-----~~-----~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 368 HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVS-----KR-----KKTVNVADIESVVARI 433 (758)
T ss_pred ccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC----ccc-----cc-----ccccChhhHHHHHHHH
Confidence 999 99999999999999999999985 589999988762 100 00 0112234678899999
Q ss_pred cccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHH
Q psy2392 160 TELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 160 t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~l 238 (1165)
|++|...+..+. ..+..+.+.|++.|+||++|++.|..++... +.|+..+.+|. +++||+||||||||++|+++
T Consensus 434 tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~--~~gl~~~~kp~---~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 434 ARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS--RAGLGHEHKPV---GSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH--hccccCCCCCc---ceEEEECCCCCCHHHHHHHH
Confidence 999999987654 7889999999999999999999999999876 77887766665 79999999999999999999
Q ss_pred HHHhCCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 239 AKLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 239 A~~l~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
|+.++.+|+++||++|.+ +||+|++.++.+++.+..
T Consensus 509 A~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~--------------------------------- 555 (758)
T PRK11034 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK--------------------------------- 555 (758)
T ss_pred HHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh---------------------------------
Confidence 999999999999999865 344444433322222211
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 556 -------------------------------------------------------------------------------- 555 (758)
T PRK11034 556 -------------------------------------------------------------------------------- 555 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG- 466 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~- 466 (1165)
.+++|||||||||+++. ||+.||+++|.+.++...|
T Consensus 556 ------------------------------~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~ 592 (758)
T PRK11034 556 ------------------------------HPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGR 592 (758)
T ss_pred ------------------------------CCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCc
Confidence 26899999999999866 8889999999777655433
Q ss_pred eecCceEEEEEeCCccc------------CCC---------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHH
Q psy2392 467 IIKTDHILFIASGAFHL------------AKP---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQ 525 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~------------~~p---------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~ 525 (1165)
.++.+|++||+|++... .++ ..|.|||++|+|.+|.|++|+.+++.+|+ ...+.+
T Consensus 593 ~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~----~~~l~~ 668 (758)
T PRK11034 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVE 668 (758)
T ss_pred eecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHH----HHHHHH
Confidence 67889999999977431 111 23889999999999999999999999999 567777
Q ss_pred HHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 526 YEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 526 ~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
..+.++.+|+.+.++++++++|++.+|+ +.+|||+|+++|++.+.+...
T Consensus 669 ~~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 669 LQAQLDQKGVSLEVSQEARDWLAEKGYD-----RAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred HHHHHHHCCCCceECHHHHHHHHHhCCC-----CCCCCchHHHHHHHHHHHHHH
Confidence 7888899999999999999999999998 589999999999999877643
No 10
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=4.4e-53 Score=533.58 Aligned_cols=389 Identities=20% Similarity=0.287 Sum_probs=314.9
Q ss_pred Ccccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh---
Q psy2392 15 MEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG--- 89 (1165)
Q Consensus 15 ~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~--- 89 (1165)
.+.+|++|+| +|+||+|+||||||++||++||++||||.|| || .| .|+|||.++++.||+++++.||.||+
T Consensus 299 ~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rR--f~-~i-~v~eps~~~~~~iL~~~~~~~e~~~~v~i 374 (852)
T TIGR03345 299 AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRR--FQ-VV-KVEEPDEETAIRMLRGLAPVLEKHHGVLI 374 (852)
T ss_pred cccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHh--Ce-EE-EeCCCCHHHHHHHHHHHHHhhhhcCCCee
Confidence 3467899999 9999999999999999999999999999999 99 55 59999999999999999999999998
Q ss_pred --HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhccCCCCccCcccc---------------------------
Q psy2392 90 --NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIITGNGDVLEPENG--------------------------- 138 (1165)
Q Consensus 90 --~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~~~~~~~~~e~~--------------------------- 138 (1165)
+||.+++.||+|||++|+|||||+ +|+||+++++...+.+.....+++.
T Consensus 375 ~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (852)
T TIGR03345 375 LDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAE 454 (852)
T ss_pred CHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Confidence 999999999999999999999855 9999999986422111100000000
Q ss_pred -----------cccc-------------------------------------------------------cccchhhHHH
Q psy2392 139 -----------IGAI-------------------------------------------------------GSGGIFAQSA 152 (1165)
Q Consensus 139 -----------~~~~-------------------------------------------------------~~~~~~~~~v 152 (1165)
+..+ ....+....+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 534 (852)
T TIGR03345 455 LRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAV 534 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHH
Confidence 0000 0011334578
Q ss_pred HHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCc
Q psy2392 153 AKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGK 231 (1165)
Q Consensus 153 a~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GK 231 (1165)
|+++++|||+|...+..++ .++.++.+.|++.|+||++|++.++.++... +.|+..+.+|. +.+||+|||||||
T Consensus 535 ~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--~~gl~~~~~p~---~~~lf~Gp~GvGK 609 (852)
T TIGR03345 535 AEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--RAGLEDPRKPL---GVFLLVGPSGVGK 609 (852)
T ss_pred HHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--hcCCCCCCCCc---eEEEEECCCCCCH
Confidence 8899999999999987754 7899999999999999999999999999876 78888777665 6899999999999
Q ss_pred hHHHHHHHHHh---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHH
Q psy2392 232 TEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 297 (1165)
Q Consensus 232 T~lAk~lA~~l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1165)
|++|++||+.+ ...|+++||++|.+ |||+|++.++.+.+.++.
T Consensus 610 T~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~----------------------- 666 (852)
T TIGR03345 610 TETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR----------------------- 666 (852)
T ss_pred HHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-----------------------
Confidence 99999999999 46889999999865 577777765544433322
Q ss_pred HHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcC
Q psy2392 298 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 377 (1165)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1165)
T Consensus 667 -------------------------------------------------------------------------------- 666 (852)
T TIGR03345 667 -------------------------------------------------------------------------------- 666 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhccccc
Q psy2392 378 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 457 (1165)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~E 457 (1165)
.+++||+||||||+++. +++.||++++
T Consensus 667 ----------------------------------------~p~svvllDEieka~~~-------------v~~~Llq~ld 693 (852)
T TIGR03345 667 ----------------------------------------KPYSVVLLDEVEKAHPD-------------VLELFYQVFD 693 (852)
T ss_pred ----------------------------------------CCCcEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 27899999999999876 7789999999
Q ss_pred Cceeeeece-eecCceEEEEEeCCcccC---------C--CC--------------CCchhhhCCCCeeEecCCCCHHHH
Q psy2392 458 GTTVNTKYG-IIKTDHILFIASGAFHLA---------K--PS--------------DLIPELQGRFPIRVELDSLSISDF 511 (1165)
Q Consensus 458 g~~v~~~~~-~~~t~~ilfI~~gaf~~~---------~--p~--------------~l~pel~~R~~~~v~~~~L~~~~l 511 (1165)
.+.++...| .+++.|.+||+|.+.... . |. .|.|||+||++ +|.|+||+.+++
T Consensus 694 ~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l 772 (852)
T TIGR03345 694 KGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVL 772 (852)
T ss_pred cceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHH
Confidence 887766554 788999999998664311 1 21 28999999998 679999999999
Q ss_pred HHHHhhhhHhHHHHHHHHHhhc-CCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 512 TRIMTSTNVCLTKQYEALLATE-GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 512 ~~Il~~~~~~l~~~~~~ll~~~-~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+|+. ..+.+....+... |+.+.++++++++|++.+++ +.+|||+|+++|++.+.+..
T Consensus 773 ~~Iv~----~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~-----~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 773 AAIVR----LKLDRIARRLKENHGAELVYSEALVEHIVARCTE-----VESGARNIDAILNQTLLPEL 831 (852)
T ss_pred HHHHH----HHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCC-----CCCChHHHHHHHHHHHHHHH
Confidence 99995 3344433334444 99999999999999999987 58999999999999876653
No 11
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-52 Score=513.89 Aligned_cols=351 Identities=21% Similarity=0.334 Sum_probs=286.6
Q ss_pred ecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Q psy2392 625 RRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKE 699 (1165)
Q Consensus 625 aRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~r 699 (1165)
+||+++||||||+.||++|+++|+|+.|| |+ +|. +.||+.++++.||++++++||.||+ +|+.++++||.|
T Consensus 312 ~~g~i~vIgATt~~E~~~~~~~D~AL~rR--Fq-~I~-v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 312 SSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred hCCCeEEEecCChHHHHHHhhccHHHHhh--Cc-EEE-eCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 47889999999999999999999999999 99 666 9999999999999999999999999 999999999999
Q ss_pred HhcccccchHH--HHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHH
Q psy2392 700 WRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIV 776 (1165)
Q Consensus 700 yi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~ 776 (1165)
|+++|+||||+ ++|++|+..+..... .. ...+....++.+++.||++|...+.. +..+...+.
T Consensus 388 yi~~r~lPdKaidlldea~a~~~~~~~~---------~~-----~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~ 453 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGARARLMPVS---------KR-----KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLG 453 (758)
T ss_pred cccCccChHHHHHHHHHHHHhhccCccc---------cc-----ccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHH
Confidence 99999999964 588888876542100 00 11233456788899999988887753 667889999
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc-
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV- 855 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~- 855 (1165)
+.|.+.|+||++|++.+..++... +.|+..+.+| .+++||+||||||||++|+++|+.++.+|+++||++|.+.
T Consensus 454 ~~L~~~ViGQ~~ai~~l~~~i~~~--~~gl~~~~kp---~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~ 528 (758)
T PRK11034 454 DRLKMLVFGQDKAIEALTEAIKMS--RAGLGHEHKP---VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH 528 (758)
T ss_pred HHhcceEeCcHHHHHHHHHHHHHH--hccccCCCCC---cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccc
Confidence 999999999999999999999865 6677665554 4789999999999999999999999999999999998652
Q ss_pred ----------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 856 ----------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 856 ----------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
||+|++.++.+.+
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~--------------------------------------------------------- 551 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTD--------------------------------------------------------- 551 (758)
T ss_pred cHHHHcCCCCCcccccccchHHH---------------------------------------------------------
Confidence 3333332222111
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 552 -------------------------------------------------------------------------------- 551 (758)
T PRK11034 552 -------------------------------------------------------------------------------- 551 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCC---
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL--- 1081 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~--- 1081 (1165)
++. ..+.+|||+|||||+... ||+.||+++|.+.++...| .++..|.+||++++...
T Consensus 552 -----~v~-~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~ 612 (758)
T PRK11034 552 -----AVI-KHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 612 (758)
T ss_pred -----HHH-hCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHH
Confidence 111 115689999999999765 9999999999766654333 57888999999977331
Q ss_pred ---------CCC---------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHH
Q psy2392 1082 ---------AKP---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 1143 (1165)
Q Consensus 1082 ---------~~p---------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~ 1143 (1165)
.++ ..|.|||++|++.+|.|.||+.+++.+|+. ..+.+.++.++.+|++|.|++++++
T Consensus 613 ~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~----~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 613 ERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred hhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHH----HHHHHHHHHHHHCCCCceECHHHHH
Confidence 111 237899999999999999999999999998 6778888888999999999999999
Q ss_pred HHHHHHhccCcCCce
Q psy2392 1144 RLAEIAYCINERTEN 1158 (1165)
Q Consensus 1144 ~ia~~a~~~~~~~~n 1158 (1165)
+|++.+|+.+.||+.
T Consensus 689 ~l~~~~~~~~~GAR~ 703 (758)
T PRK11034 689 WLAEKGYDRAMGARP 703 (758)
T ss_pred HHHHhCCCCCCCCch
Confidence 999999998544443
No 12
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.8e-51 Score=515.80 Aligned_cols=350 Identities=20% Similarity=0.306 Sum_probs=286.9
Q ss_pred ecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Q psy2392 625 RRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKE 699 (1165)
Q Consensus 625 aRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~r 699 (1165)
+||+++||||||..||++|+++|+|+.|| |+ .|. +.||+.+++..||++++.+||.||+ +|+.+++.+|.|
T Consensus 308 ~~g~i~~IgaTt~~e~~~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 308 SSGKLRCIGSTTYEEYKNHFEKDRALSRR--FQ-KID-VGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred hCCCeEEEEecCHHHHHHHhhhhHHHHHh--Cc-eEE-eCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 47889999999999999999999999999 99 665 9999999999999999999999998 999999999999
Q ss_pred HhcccccchHH--HHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHHH-HhhhHHHHHH
Q psy2392 700 WRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEII-KKSLVIAEIV 776 (1165)
Q Consensus 700 yi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~-~~~~~~~~l~ 776 (1165)
|+++|+||||+ ++|++++..+..... . ....+....++.+++.||++|+..+. .+..+..+++
T Consensus 384 yi~~r~~P~kai~lld~a~a~~~~~~~~--~------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~ 449 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASFRLRPKA--K------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLE 449 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhhhcCccc--c------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence 99999999965 478887765542100 0 01234556788899999999987764 4678899999
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc--
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE-- 854 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~-- 854 (1165)
+.|++.|+||+++++.+..++... +.|+.++.+| .+++||+||||||||++|+++|+.++.+|+++||++|.+
T Consensus 450 ~~l~~~v~GQ~~ai~~l~~~i~~~--~~g~~~~~~p---~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 450 KNLKAKIFGQDEAIDSLVSSIKRS--RAGLGNPNKP---VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH 524 (731)
T ss_pred HHHhcceeCcHHHHHHHHHHHHHH--hcCCCCCCCC---ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc
Confidence 999999999999999999998855 7777766555 468999999999999999999999999999999999865
Q ss_pred ---------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 855 ---------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 855 ---------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
+||+|++.++.+.+.
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~-------------------------------------------------------- 548 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEA-------------------------------------------------------- 548 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHH--------------------------------------------------------
Confidence 244444433222211
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 549 -------------------------------------------------------------------------------- 548 (731)
T TIGR02639 549 -------------------------------------------------------------------------------- 548 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCC--
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA-- 1082 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~-- 1082 (1165)
+. ..+.+|||||||||+... +|+.||+++|++.++...| .++..|.+||++...-..
T Consensus 549 ------~~-~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 549 ------VR-KHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred ------HH-hCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 11 125689999999999765 9999999999887765445 678889999997644210
Q ss_pred -C---------C---------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHH
Q psy2392 1083 -K---------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 1143 (1165)
Q Consensus 1083 -~---------p---------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~ 1143 (1165)
+ + ..|.|||++||+-+|.|+||+.+++.+|+. ..+.+....++..|++|.+++++++
T Consensus 609 ~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~----~~L~~l~~~l~~~~~~l~i~~~a~~ 684 (731)
T TIGR02639 609 SKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQ----KFVDELSKQLNEKNIKLELTDDAKK 684 (731)
T ss_pred hhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhCCCeEEeCHHHHH
Confidence 1 0 237899999999999999999999999999 5666667777888999999999999
Q ss_pred HHHHHHhccCcCCceeecc
Q psy2392 1144 RLAEIAYCINERTENIVII 1162 (1165)
Q Consensus 1144 ~ia~~a~~~~~~~~nigar 1162 (1165)
+|++.+|+. +.|||
T Consensus 685 ~La~~~~~~-----~~GaR 698 (731)
T TIGR02639 685 YLAEKGYDE-----EFGAR 698 (731)
T ss_pred HHHHhCCCc-----ccCch
Confidence 999999998 55665
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=4.8e-52 Score=521.07 Aligned_cols=383 Identities=20% Similarity=0.320 Sum_probs=320.6
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
.+++.+..+.+|++|+| +|++|+|+||||||++||++|+++|+||.|| || .| .|+|||.++++.||++++.+||
T Consensus 287 ~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rR--f~-~i-~v~~p~~~~~~~il~~~~~~~e 362 (731)
T TIGR02639 287 VGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRR--FQ-KI-DVGEPSIEETVKILKGLKEKYE 362 (731)
T ss_pred hccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHh--Cc-eE-EeCCCCHHHHHHHHHHHHHHHH
Confidence 34554445568999999 9999999999999999999999999999999 99 56 5999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhh
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQE 158 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~ 158 (1165)
.||+ +||.+++.+|+||+++|+|||||+ +|+||+..++.... . + ...+....++.+++.
T Consensus 363 ~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~--~-----~-------~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 363 EFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA--K-----K-------KANVSVKDIENVVAK 428 (731)
T ss_pred hccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc--c-----c-------ccccCHHHHHHHHHH
Confidence 9998 999999999999999999999865 89999988763110 0 0 112334477888999
Q ss_pred ccccCchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHH
Q psy2392 159 NTELMPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARR 237 (1165)
Q Consensus 159 ~t~l~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~ 237 (1165)
||++|+..+..+ ..++.++.+.|++.|+||++|++.+..++... +.|+.++.+|. +++||+||||||||++|++
T Consensus 429 ~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~--~~g~~~~~~p~---~~~lf~Gp~GvGKT~lA~~ 503 (731)
T TIGR02639 429 MAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS--RAGLGNPNKPV---GSFLFTGPTGVGKTELAKQ 503 (731)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH--hcCCCCCCCCc---eeEEEECCCCccHHHHHHH
Confidence 999999888764 47889999999999999999999999999865 78887777664 7899999999999999999
Q ss_pred HHHHhCCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCC
Q psy2392 238 LAKLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPS 306 (1165)
Q Consensus 238 lA~~l~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 306 (1165)
||+.++.+++++||++|.+ +||+|++.++.+.+.++.
T Consensus 504 la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-------------------------------- 551 (731)
T TIGR02639 504 LAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-------------------------------- 551 (731)
T ss_pred HHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh--------------------------------
Confidence 9999999999999999865 455555544333322211
Q ss_pred CcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCcccccee
Q psy2392 307 KEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKI 386 (1165)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1165)
T Consensus 552 -------------------------------------------------------------------------------- 551 (731)
T TIGR02639 552 -------------------------------------------------------------------------------- 551 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece
Q psy2392 387 KIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466 (1165)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~ 466 (1165)
.+++|||||||||+++. +|+.||+++|.+.++...|
T Consensus 552 -------------------------------~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g 587 (731)
T TIGR02639 552 -------------------------------HPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNG 587 (731)
T ss_pred -------------------------------CCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCC
Confidence 26899999999999876 8889999999888776555
Q ss_pred -eecCceEEEEEeCCcccC---C------------------CCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHH
Q psy2392 467 -IIKTDHILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 524 (1165)
Q Consensus 467 -~~~t~~ilfI~~gaf~~~---~------------------p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~ 524 (1165)
.++.+|.+||+|++.... + -..|.|||++||+.+|.|+||+.+++.+|+. ..+.
T Consensus 588 ~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~----~~L~ 663 (731)
T TIGR02639 588 RKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQ----KFVD 663 (731)
T ss_pred cccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHH----HHHH
Confidence 678899999998754311 0 0238999999999999999999999999994 5566
Q ss_pred HHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 525 QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 525 ~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+..+.+...|+.+.++++++++|++.+|+ +++|||+|++.|++.+++..
T Consensus 664 ~l~~~l~~~~~~l~i~~~a~~~La~~~~~-----~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 664 ELSKQLNEKNIKLELTDDAKKYLAEKGYD-----EEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred HHHHHHHhCCCeEEeCHHHHHHHHHhCCC-----cccCchHHHHHHHHHhHHHH
Confidence 66677788899999999999999999988 68999999999999987764
No 14
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=8.3e-52 Score=524.25 Aligned_cols=397 Identities=22% Similarity=0.299 Sum_probs=323.2
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
.+++.+. +.+|++|+| +|+||+|+||||||++||++|+++||||.|| |+ .| .++||+.+++..||++++++||
T Consensus 284 ~~~g~~~-g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rR--f~-~I-~v~ep~~~e~~aILr~l~~~~e 358 (821)
T CHL00095 284 IGAGAAE-GAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERR--FQ-PV-YVGEPSVEETIEILFGLRSRYE 358 (821)
T ss_pred hcCCCCC-CcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhc--ce-EE-ecCCCCHHHHHHHHHHHHHHHH
Confidence 3444433 357999999 9999999999999999999999999999999 99 56 5999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCcccccccc----------------
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAI---------------- 142 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~e~~~~~~---------------- 142 (1165)
+||+ +++.+++.||+||+++|+||||| ++|+||++++....+.+.....+++.+.++
T Consensus 359 ~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (821)
T CHL00095 359 KHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETA 438 (821)
T ss_pred HHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHH
Confidence 9998 99999999999999999999985 599999999874222121111111110000
Q ss_pred -----------------------------cccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhH
Q psy2392 143 -----------------------------GSGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAK 192 (1165)
Q Consensus 143 -----------------------------~~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~ 192 (1165)
....+....+++++++|||+|...+.++. .++..+.+.|++.|+||++|+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai 518 (821)
T CHL00095 439 KQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAV 518 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHH
Confidence 00224446788999999999999988765 778999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccc-----------cc
Q psy2392 193 RAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VG 258 (1165)
Q Consensus 193 ~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~-----------~G 258 (1165)
+.|..++... +.|+..+.+|. +++||+||||||||++|++||+.+ +.+++++||++|.+ ||
T Consensus 519 ~~l~~~i~~~--~~gl~~~~~p~---~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g 593 (821)
T CHL00095 519 VAVSKAIRRA--RVGLKNPNRPI---ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG 593 (821)
T ss_pred HHHHHHHHHH--hhcccCCCCCc---eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc
Confidence 9999999877 88888777765 789999999999999999999998 47899999999854 56
Q ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCC
Q psy2392 259 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 338 (1165)
Q Consensus 259 yvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 338 (1165)
|+|+++++.+.+.+..
T Consensus 594 yvg~~~~~~l~~~~~~---------------------------------------------------------------- 609 (821)
T CHL00095 594 YVGYNEGGQLTEAVRK---------------------------------------------------------------- 609 (821)
T ss_pred ccCcCccchHHHHHHh----------------------------------------------------------------
Confidence 6666654433333222
Q ss_pred CCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhc
Q psy2392 339 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 418 (1165)
Q Consensus 339 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 418 (1165)
.
T Consensus 610 -------------------------------------------------------------------------------~ 610 (821)
T CHL00095 610 -------------------------------------------------------------------------------K 610 (821)
T ss_pred -------------------------------------------------------------------------------C
Confidence 2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCcccC-------------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA------------- 484 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~~------------- 484 (1165)
+++|||||||||+++. +++.||+++|.+.++... ..++++|.+||+|+++...
T Consensus 611 p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~ 677 (821)
T CHL00095 611 PYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFEL 677 (821)
T ss_pred CCeEEEECChhhCCHH-------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcc
Confidence 6899999999999876 888999999977666543 3788999999999765321
Q ss_pred ------CC--------------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHH
Q psy2392 485 ------KP--------------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGI 544 (1165)
Q Consensus 485 ------~p--------------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~ 544 (1165)
.. ..|.|||+||++.+|.|+||+.+++.+|+ ...+.+..+.++..|+.|.++++++
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv----~~~l~~l~~rl~~~~i~l~~~~~~~ 753 (821)
T CHL00095 678 SENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA----EIMLKNLFKRLNEQGIQLEVTERIK 753 (821)
T ss_pred cccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH----HHHHHHHHHHHHHCCcEEEECHHHH
Confidence 00 02889999999999999999999999999 4556666556788899999999999
Q ss_pred HHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 545 QRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 545 ~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
++|++.+|+ +.+|||+|+++|++.+++...
T Consensus 754 ~~La~~~~~-----~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 754 TLLIEEGYN-----PLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHhcCC-----CCCChhhHHHHHHHHHHHHHH
Confidence 999999988 589999999999999876644
No 15
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=5.8e-51 Score=514.35 Aligned_cols=362 Identities=20% Similarity=0.296 Sum_probs=281.9
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||..||++||++|+||.|| |+ .|. +.||+.+++..||++++..||.||+ +|+.+++++|+
T Consensus 312 l~~G~l~~IgaTT~~e~~~~~~~d~AL~rR--f~-~i~-v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 312 LARGELRTIAATTWAEYKKYFEKDPALTRR--FQ-VVK-VEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred hhCCCeEEEEecCHHHHhhhhhccHHHHHh--Ce-EEE-eCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 468999999999999999999999999999 99 565 9999999999999999999999998 99999999999
Q ss_pred HHhcccccchH--HHHhhhhhhhhhhhhcCCCCcc------------------------Ccccc----------------
Q psy2392 699 EWRNDRTLRRL--EAMLLTANRETTLIITGNGDVL------------------------EPENG---------------- 736 (1165)
Q Consensus 699 ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~------------------------~~~~~---------------- 736 (1165)
||+++|+|||| |++|++|+..++..-+.+.... +....
T Consensus 388 ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (852)
T TIGR03345 388 RYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELA 467 (852)
T ss_pred cccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 5599998877653111000000 00000
Q ss_pred ------------c-----------------------------------c------ccccccccHHHHHHHhhhccCCChH
Q psy2392 737 ------------I-----------------------------------G------AIGSGGIFAQSAAKALQENTELMPD 763 (1165)
Q Consensus 737 ------------i-----------------------------------~------~i~~~~~~~~~~a~~l~~~t~~~~~ 763 (1165)
. . .+....+....++.++++||++|..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~ 547 (852)
T TIGR03345 468 ALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVG 547 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCch
Confidence 0 0 0001225567789999999999998
Q ss_pred HHH-HhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc--
Q psy2392 764 EII-KKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-- 840 (1165)
Q Consensus 764 ~i~-~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-- 840 (1165)
.+. ++..++.++.+.|.+.|+||++|++.+..++... +.|+..+.+| .+.+||+||||||||++|+++|+.+
T Consensus 548 ~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--~~gl~~~~~p---~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 548 RMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--RAGLEDPRKP---LGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--hcCCCCCCCC---ceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 874 4677899999999999999999999999999865 6777766554 3679999999999999999999998
Q ss_pred -CCCeEEEecCCccc-----------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccC
Q psy2392 841 -NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKS 908 (1165)
Q Consensus 841 -~~~fi~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~ 908 (1165)
...|+++||++|.+ +||+|++.++.+.+.+
T Consensus 623 ~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v-------------------------------------- 664 (852)
T TIGR03345 623 GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAV-------------------------------------- 664 (852)
T ss_pred CCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHH--------------------------------------
Confidence 46789999999865 3677766544433221
Q ss_pred CCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHH
Q psy2392 909 NLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 988 (1165)
Q Consensus 909 ~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~ 988 (1165)
T Consensus 665 -------------------------------------------------------------------------------- 664 (852)
T TIGR03345 665 -------------------------------------------------------------------------------- 664 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-ecc
Q psy2392 989 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIK 1067 (1165)
Q Consensus 989 a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~ 1067 (1165)
+. .+.+||+||||||.... +++.||++++.+.++...| .++
T Consensus 665 ------------------------~~-~p~svvllDEieka~~~-------------v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 665 ------------------------RR-KPYSVVLLDEVEKAHPD-------------VLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred ------------------------Hh-CCCcEEEEechhhcCHH-------------HHHHHHHHhhcceeecCCCcEEe
Confidence 11 25689999999987654 8999999998777665445 678
Q ss_pred CceEEEEecCCCCC---------CC--CC--------------CCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHH
Q psy2392 1068 TDHILFIASGAFHL---------AK--PS--------------DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 1122 (1165)
Q Consensus 1068 t~~ilfI~~gaf~~---------~~--p~--------------dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~ 1122 (1165)
..|.+||++.+... .+ |. .|.|||++|+. .|.|.||+.+++.+|+. ..+.
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~----~~L~ 781 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVR----LKLD 781 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHH----HHHH
Confidence 88999998755421 01 21 28899999998 57899999999999999 3344
Q ss_pred HHHHHH-hhcCCceEeCHHHHHHHHHHHhccCcC
Q psy2392 1123 QYEALL-ATEGIKIEFVDDGIQRLAEIAYCINER 1155 (1165)
Q Consensus 1123 q~~~l~-~~egv~l~~~~~ai~~ia~~a~~~~~~ 1155 (1165)
+....+ ..+|+.+.++++++++|++.+|+...|
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~G 815 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESG 815 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCC
Confidence 333223 345999999999999999999987333
No 16
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=9.9e-50 Score=505.31 Aligned_cols=366 Identities=22% Similarity=0.300 Sum_probs=290.0
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||+.||++|+++|+++.|| |+ .|. +.||+.+++..||++++..|++||+ +++.+++++|+
T Consensus 303 l~rg~l~~IgaTt~~ey~~~ie~D~aL~rR--f~-~I~-v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~ 378 (821)
T CHL00095 303 LARGELQCIGATTLDEYRKHIEKDPALERR--FQ-PVY-VGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSD 378 (821)
T ss_pred HhCCCcEEEEeCCHHHHHHHHhcCHHHHhc--ce-EEe-cCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999999999999 99 665 9999999999999999999999998 99999999999
Q ss_pred HHhcccccchH--HHHhhhhhhhhhhhhcCCCCccCcccc---------------------------------c------
Q psy2392 699 EWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENG---------------------------------I------ 737 (1165)
Q Consensus 699 ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~---------------------------------i------ 737 (1165)
+|+++|+|||| +++|++|+..+...-+.+......... .
T Consensus 379 ~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (821)
T CHL00095 379 QYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQS 458 (821)
T ss_pred ccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 558889887765321111000000000 0
Q ss_pred ------cccccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCC
Q psy2392 738 ------GAIGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPL 810 (1165)
Q Consensus 738 ------~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~ 810 (1165)
.......+....++.+++.||++|...+.. +..++.++.+.|.+.|+||++|++.+..++... +.|+..+.
T Consensus 459 ~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--~~gl~~~~ 536 (821)
T CHL00095 459 KKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--RVGLKNPN 536 (821)
T ss_pred HHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--hhcccCCC
Confidence 000113466678999999999999988754 567789999999999999999999999999866 77777665
Q ss_pred CCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCccc-----------ccccccChhhHHHHHHHHHHhh
Q psy2392 811 QQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQ 876 (1165)
Q Consensus 811 ~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~ 876 (1165)
+| ..++||+||||||||++|++||+.+ ..+++++||++|.+ +||+|++.++.+.+.+
T Consensus 537 ~p---~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~------ 607 (821)
T CHL00095 537 RP---IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAV------ 607 (821)
T ss_pred CC---ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHH------
Confidence 54 4789999999999999999999998 47899999999864 3555555433222211
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccC
Q psy2392 877 TREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMS 956 (1165)
Q Consensus 877 ~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~ 956 (1165)
T Consensus 608 -------------------------------------------------------------------------------- 607 (821)
T CHL00095 608 -------------------------------------------------------------------------------- 607 (821)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCC
Q psy2392 957 PPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN 1036 (1165)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~ 1036 (1165)
+ ..+.+|||||||||....
T Consensus 608 ----------------------------------------------------~-----~~p~~VvllDeieka~~~---- 626 (821)
T CHL00095 608 ----------------------------------------------------R-----KKPYTVVLFDEIEKAHPD---- 626 (821)
T ss_pred ----------------------------------------------------H-----hCCCeEEEECChhhCCHH----
Confidence 0 014579999999998765
Q ss_pred CCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCC-------------------CC------------
Q psy2392 1037 NNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA-------------------KP------------ 1084 (1165)
Q Consensus 1037 ~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~-------------------~p------------ 1084 (1165)
+|+.||+++|.+.++...| .++..|.+||++.++... ..
T Consensus 627 ---------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 697 (821)
T CHL00095 627 ---------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEE 697 (821)
T ss_pred ---------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHH
Confidence 9999999999776654434 678899999998665321 00
Q ss_pred --CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1085 --SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1085 --~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
..|.|||++|++-+|.|.||+.+++.+|+. ..+.+....++..|+.|.++++++++|++.+|+...||+.
T Consensus 698 ~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~----~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~ 769 (821)
T CHL00095 698 LKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAE----IMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARP 769 (821)
T ss_pred HHHhcCHHHhccCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhh
Confidence 017799999998889999999999999998 5666665557888999999999999999999998555543
No 17
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=3.3e-49 Score=501.83 Aligned_cols=389 Identities=23% Similarity=0.341 Sum_probs=313.5
Q ss_pred ccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh-----
Q psy2392 17 KFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG----- 89 (1165)
Q Consensus 17 ~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~----- 89 (1165)
.+|++|+| +|+||+|+||||||++||++||++|+||.|| || +|. |++|+.++++.||++++.+||.||+
T Consensus 287 ~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d 362 (852)
T TIGR03346 287 AMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERR--FQ-PVF-VDEPTVEDTISILRGLKERYEVHHGVRITD 362 (852)
T ss_pred hhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhc--CC-EEE-eCCCCHHHHHHHHHHHHHHhccccCCCCCH
Confidence 47899999 9999999999999999999999999999999 99 676 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhccCCCCccCcccccc---------------------------
Q psy2392 90 NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIITGNGDVLEPENGIG--------------------------- 140 (1165)
Q Consensus 90 ~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~~~~~~~~~e~~~~--------------------------- 140 (1165)
++|.+|+.||+||+++|+|||||+ +|+|||+++....+.+.....+++.+.
T Consensus 363 ~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (852)
T TIGR03346 363 PAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKE 442 (852)
T ss_pred HHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 899999999999999999999864 999999987642222211000000000
Q ss_pred --c-----------------------------------------------------------------------------
Q psy2392 141 --A----------------------------------------------------------------------------- 141 (1165)
Q Consensus 141 --~----------------------------------------------------------------------------- 141 (1165)
.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (852)
T TIGR03346 443 LAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPR 522 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccc
Confidence 0
Q ss_pred ccccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcE
Q psy2392 142 IGSGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKN 220 (1165)
Q Consensus 142 ~~~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~ 220 (1165)
+....+....++.++++|||+|...+..++ .++.++++.|++.|+||+.|++.+..++... +.|+..+.+|. ++
T Consensus 523 l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--~~gl~~~~~p~---~~ 597 (852)
T TIGR03346 523 LLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--RAGLSDPNRPI---GS 597 (852)
T ss_pred cccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--hccCCCCCCCC---eE
Confidence 000113334677889999999998877654 7789999999999999999999999999876 77877776664 79
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHH
Q psy2392 221 ILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINK 286 (1165)
Q Consensus 221 ~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~ 286 (1165)
+||+||||||||++|++||+.+ +.+++++||++|.+ |||+|++.++.+++.+
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v-------------- 663 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAV-------------- 663 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHH--------------
Confidence 9999999999999999999988 57899999998754 3444444333222221
Q ss_pred HHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHh
Q psy2392 287 VRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMT 366 (1165)
Q Consensus 287 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 366 (1165)
T Consensus 664 -------------------------------------------------------------------------------- 663 (852)
T TIGR03346 664 -------------------------------------------------------------------------------- 663 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchh
Q psy2392 367 AQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRA 446 (1165)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~ 446 (1165)
.. .+++|||||||+|+++.
T Consensus 664 ------------------------------------------------~~-~p~~vlllDeieka~~~------------ 682 (852)
T TIGR03346 664 ------------------------------------------------RR-KPYSVVLFDEVEKAHPD------------ 682 (852)
T ss_pred ------------------------------------------------Hc-CCCcEEEEeccccCCHH------------
Confidence 11 26789999999999877
Q ss_pred hhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---C------------------CCCCchhhhCCCCeeEecC
Q psy2392 447 GVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELD 504 (1165)
Q Consensus 447 ~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---~------------------p~~l~pel~~R~~~~v~~~ 504 (1165)
+|+.||+++|.+.++...| .++.+|.+||+|++.... + -..|.|||.+||+.+|.|.
T Consensus 683 -v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~ 761 (852)
T TIGR03346 683 -VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFH 761 (852)
T ss_pred -HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecC
Confidence 8889999998777665444 688899999999776321 1 1238899999999999999
Q ss_pred CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 505 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 505 ~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
||+.+++.+|+. ..+....+.+...|+.+.++++++++|++.+|+ +.+|||.|+++|++.+.+...
T Consensus 762 PL~~e~l~~I~~----l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~-----~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 762 PLGREQIARIVE----IQLGRLRKRLAERKITLELSDAALDFLAEAGYD-----PVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred CcCHHHHHHHHH----HHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCC-----CCCCchhHHHHHHHHHHHHHH
Confidence 999999999994 445555566677899999999999999999887 579999999999999876543
No 18
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-49 Score=428.62 Aligned_cols=290 Identities=37% Similarity=0.638 Sum_probs=256.7
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCC-CCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~-~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..+|.++.+.|++.|+||+.||+.++.+++++|+|...... .-.....+++||.||||||||.||+.||+.++.||..-
T Consensus 49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred CCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 36899999999999999999999999999999999754432 22334468999999999999999999999999999999
Q ss_pred eccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHH
Q psy2392 250 EATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIF 329 (1165)
Q Consensus 250 d~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1165)
|++.+++.||+|++.++.+.+|++.+-
T Consensus 129 DATtLTEAGYVGEDVENillkLlqaad----------------------------------------------------- 155 (408)
T COG1219 129 DATTLTEAGYVGEDVENILLKLLQAAD----------------------------------------------------- 155 (408)
T ss_pred cccchhhccccchhHHHHHHHHHHHcc-----------------------------------------------------
Confidence 999999999999999999988887730
Q ss_pred HHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHH
Q psy2392 330 RKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 409 (1165)
Q Consensus 330 ~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1165)
|+
T Consensus 156 ------------------------yd------------------------------------------------------ 157 (408)
T COG1219 156 ------------------------YD------------------------------------------------------ 157 (408)
T ss_pred ------------------------cC------------------------------------------------------
Confidence 00
Q ss_pred HHHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeee-----------ceeecCceEEEEE
Q psy2392 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTK-----------YGIIKTDHILFIA 477 (1165)
Q Consensus 410 ~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~-----------~~~~~t~~ilfI~ 477 (1165)
+..| +.|||+|||||||+..+++.+ ++|+|+||||++||.++||++++.. +..++|+||||||
T Consensus 158 ----V~rA-erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIc 232 (408)
T COG1219 158 ----VERA-ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFIC 232 (408)
T ss_pred ----HHHH-hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEe
Confidence 1112 789999999999999988766 7999999999999999999988762 4589999999999
Q ss_pred eCCccc-----------------------------------CCCCC-----CchhhhCCCCeeEecCCCCHHHHHHHHhh
Q psy2392 478 SGAFHL-----------------------------------AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTS 517 (1165)
Q Consensus 478 ~gaf~~-----------------------------------~~p~~-----l~pel~~R~~~~v~~~~L~~~~l~~Il~~ 517 (1165)
.|||.. ..|.| |+|||.||+|++..+.+|++++|.+||++
T Consensus 233 gGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILte 312 (408)
T COG1219 233 GGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTE 312 (408)
T ss_pred ccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhc
Confidence 999971 01323 89999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEccccc
Q psy2392 518 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYV 593 (1165)
Q Consensus 518 ~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~v 593 (1165)
|++++.+||+++++.+|++|.|+++|++.||+.|.. ...|||.|+.++|.++.+++|+.|... +.||.+.|
T Consensus 313 PkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~-----rkTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v 387 (408)
T COG1219 313 PKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIE-----RKTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVV 387 (408)
T ss_pred ccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHhhCCCCCCceEEEEeHHHh
Confidence 999999999999999999999999999999999998 589999999999999999999999875 89999999
Q ss_pred ccccccCc
Q psy2392 594 NSRLGDLS 601 (1165)
Q Consensus 594 ~~~~~~~~ 601 (1165)
.....+.+
T Consensus 388 ~~~~~p~l 395 (408)
T COG1219 388 DGNAEPLL 395 (408)
T ss_pred CCCCCCeE
Confidence 87666554
No 19
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=7.3e-49 Score=496.77 Aligned_cols=396 Identities=23% Similarity=0.336 Sum_probs=311.8
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
.+++.+ -+.||++|+| +|+||+|+||||||++||++||++|+||.|| || .|. |.||+.++++.||++++++||
T Consensus 284 ~~~~~~-~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 284 VGAGKA-DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERR--FQ-KVF-VAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred ccCCCC-ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhh--CC-EEE-eCCCCHHHHHHHHHHHhhhhc
Confidence 455543 3468999999 9999999999999999999999999999999 99 677 999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCc----------------c------
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEP----------------E------ 136 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~----------------e------ 136 (1165)
.||+ +++.+++.||+||+++|+||||| ++|++|+..++...+.+.....+ +
T Consensus 359 ~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~ 438 (857)
T PRK10865 359 LHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASK 438 (857)
T ss_pred cCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9997 99999999999999999999986 48999999876422111100000 0
Q ss_pred -------cc-------c-----------cccc------------------------------------------------
Q psy2392 137 -------NG-------I-----------GAIG------------------------------------------------ 143 (1165)
Q Consensus 137 -------~~-------~-----------~~~~------------------------------------------------ 143 (1165)
.. . ..++
T Consensus 439 ~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (857)
T PRK10865 439 KRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQ 518 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHh
Confidence 00 0 0000
Q ss_pred ---------ccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCC
Q psy2392 144 ---------SGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQ 213 (1165)
Q Consensus 144 ---------~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~ 213 (1165)
...+....+|.++++|||+|...+..+. .++..+++.|.+.|+||+.|+..|..++... +.|+..+.+
T Consensus 519 ~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--~~gl~~~~~ 596 (857)
T PRK10865 519 LEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--RAGLSDPNR 596 (857)
T ss_pred hhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--HhcccCCCC
Confidence 0112334678889999999999987754 7889999999999999999999999999876 777777666
Q ss_pred CccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhh
Q psy2392 214 QEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQT 279 (1165)
Q Consensus 214 ~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~ 279 (1165)
|. +++||+||||||||++|++||+.+ +.+|++++|++|.+ |||+|++.++.++
T Consensus 597 p~---~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~---------- 663 (857)
T PRK10865 597 PI---GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLT---------- 663 (857)
T ss_pred CC---ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHH----------
Confidence 64 789999999999999999999988 46899999998753 1222222111111
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCC
Q psy2392 280 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSP 359 (1165)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~ 359 (1165)
T Consensus 664 -------------------------------------------------------------------------------- 663 (857)
T PRK10865 664 -------------------------------------------------------------------------------- 663 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC
Q psy2392 360 PGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN 439 (1165)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~ 439 (1165)
+++.. .++++||||||+++++.
T Consensus 664 ----------------------------------------------------~~v~~-~p~~vLllDEieka~~~----- 685 (857)
T PRK10865 664 ----------------------------------------------------EAVRR-RPYSVILLDEVEKAHPD----- 685 (857)
T ss_pred ----------------------------------------------------HHHHh-CCCCeEEEeehhhCCHH-----
Confidence 11111 26789999999999866
Q ss_pred CCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---------------------CCCCCchhhhCCC
Q psy2392 440 NTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---------------------KPSDLIPELQGRF 497 (1165)
Q Consensus 440 ~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---------------------~p~~l~pel~~R~ 497 (1165)
+|+.||+++|.+.++...| .++.+|.+||++.++... .-..|.|||++|+
T Consensus 686 --------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRl 757 (857)
T PRK10865 686 --------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRI 757 (857)
T ss_pred --------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhC
Confidence 7889999998766554333 678899999998776311 0134899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+.+|.|.||+.+++.+|+. ..+.+....++..|+.+.++++++++|++.+|+ +.+|||+|+++|++.+++.
T Consensus 758 d~iivF~PL~~edl~~Iv~----~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~-----~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 758 DEVVVFHPLGEQHIASIAQ----IQLQRLYKRLEERGYEIHISDEALKLLSENGYD-----PVYGARPLKRAIQQQIENP 828 (857)
T ss_pred CeeEecCCCCHHHHHHHHH----HHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCC-----ccCChHHHHHHHHHHHHHH
Confidence 9999999999999999994 455555455567789999999999999999988 5899999999999998775
Q ss_pred h
Q psy2392 578 S 578 (1165)
Q Consensus 578 ~ 578 (1165)
.
T Consensus 829 l 829 (857)
T PRK10865 829 L 829 (857)
T ss_pred H
Confidence 3
No 20
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=1.3e-47 Score=485.40 Aligned_cols=376 Identities=22% Similarity=0.307 Sum_probs=278.4
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||+.||++||++|+|+.|| || .|. +.||+.++++.||++++++||.||+ +++.+++.+|+
T Consensus 303 l~~g~l~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 303 LARGELHCVGATTLDEYRQYIEKDAALERR--FQ-KVF-VAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred hhcCCCeEEEcCCCHHHHHHhhhcHHHHhh--CC-EEE-eCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 568999999999999999999999999999 99 777 9999999999999999999999997 89999999999
Q ss_pred HHhcccccchHH--HHhhhhhhhhhhhhcCCCCc----------------------cC---------------------c
Q psy2392 699 EWRNDRTLRRLE--AMLLTANRETTLIITGNGDV----------------------LE---------------------P 733 (1165)
Q Consensus 699 ryi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~----------------------~~---------------------~ 733 (1165)
||+++|+||||+ ++|.+++..+....+.+... .. .
T Consensus 379 ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L 458 (857)
T PRK10865 379 RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSEL 458 (857)
T ss_pred ccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 47777766543211100000 00 0
Q ss_pred ccccc-------------------------------------------------------------ccccccccHHHHHH
Q psy2392 734 ENGIG-------------------------------------------------------------AIGSGGIFAQSAAK 752 (1165)
Q Consensus 734 ~~~i~-------------------------------------------------------------~i~~~~~~~~~~a~ 752 (1165)
...+. ..-...+....+|.
T Consensus 459 ~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 538 (857)
T PRK10865 459 EEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAE 538 (857)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHH
Confidence 00000 00002255567889
Q ss_pred HhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhH
Q psy2392 753 ALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831 (1165)
Q Consensus 753 ~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~ 831 (1165)
++++||++|...+.. +..++..+++.|.+.|+||+.+++.+..++... +.|+..+.+| .+.+||+||||||||+
T Consensus 539 vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--~~gl~~~~~p---~~~~Lf~Gp~G~GKT~ 613 (857)
T PRK10865 539 VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--RAGLSDPNRP---IGSFLFLGPTGVGKTE 613 (857)
T ss_pred HHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--HhcccCCCCC---CceEEEECCCCCCHHH
Confidence 999999999988754 677889999999999999999999999999865 6666665544 3689999999999999
Q ss_pred HHHHHHHHc---CCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccC
Q psy2392 832 IARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKS 908 (1165)
Q Consensus 832 lAk~lA~~l---~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~ 908 (1165)
+|++||+.+ +.+|+.++|++|.+. ..+..+++..
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~--------~~~~~LiG~~----------------------------------- 650 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEK--------HSVSRLVGAP----------------------------------- 650 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhh--------hhHHHHhCCC-----------------------------------
Confidence 999999987 467999999987532 1122221000
Q ss_pred CCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHH
Q psy2392 909 NLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 988 (1165)
Q Consensus 909 ~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~ 988 (1165)
++ + . |.++..
T Consensus 651 --pg-y-----------------------------------~--------g~~~~g------------------------ 660 (857)
T PRK10865 651 --PG-Y-----------------------------------V--------GYEEGG------------------------ 660 (857)
T ss_pred --Cc-c-----------------------------------c--------ccchhH------------------------
Confidence 00 0 0 000000
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-ecc
Q psy2392 989 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIK 1067 (1165)
Q Consensus 989 a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~ 1067 (1165)
.+ ..++. ..+.+++|||||||+... +|+.||+++|.+.+....| .++
T Consensus 661 -----------------~l-~~~v~-~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 661 -----------------YL-TEAVR-RRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred -----------------HH-HHHHH-hCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceEEe
Confidence 00 01111 124689999999998765 9999999998765543223 577
Q ss_pred CceEEEEecCCCCCC---------------------CCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHH
Q psy2392 1068 TDHILFIASGAFHLA---------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 1126 (1165)
Q Consensus 1068 t~~ilfI~~gaf~~~---------------------~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~ 1126 (1165)
..|.+||++..+... .-..|.|||.+|++..+.|.||+.+++.+|++ ..+.+...
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~----~~L~~l~~ 784 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQ----IQLQRLYK 784 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHH----HHHHHHHH
Confidence 788888888766311 01348899999999999999999999999999 55555544
Q ss_pred HHhhcCCceEeCHHHHHHHHHHHhccCcCCc
Q psy2392 1127 LLATEGIKIEFVDDGIQRLAEIAYCINERTE 1157 (1165)
Q Consensus 1127 l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ 1157 (1165)
.++..|+.+.+++++++.|+..+|+.+.||+
T Consensus 785 rl~~~gi~l~is~~al~~L~~~gy~~~~GAR 815 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSENGYDPVYGAR 815 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHcCCCccCChH
Confidence 4566789999999999999999999844443
No 21
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-49 Score=424.60 Aligned_cols=259 Identities=38% Similarity=0.656 Sum_probs=227.1
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-CCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+--+|.++++.|+++|+||+.||+.+..++++||+|...... .-....+.|+||+||+|||||.||+.||+.++.||-.
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred cCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 346799999999999999999999999999999999865432 2233456899999999999999999999999999999
Q ss_pred EecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHH
Q psy2392 847 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 926 (1165)
Q Consensus 847 l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~ 926 (1165)
.|++.+++.||||++.++.+.+|+..|
T Consensus 128 ADATtLTEAGYVGEDVENillkLlqaa----------------------------------------------------- 154 (408)
T COG1219 128 ADATTLTEAGYVGEDVENILLKLLQAA----------------------------------------------------- 154 (408)
T ss_pred ccccchhhccccchhHHHHHHHHHHHc-----------------------------------------------------
Confidence 999999999999999998887775444
Q ss_pred HHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
.+ +
T Consensus 155 --------dy---------------------------------------------------------------------d 157 (408)
T COG1219 155 --------DY---------------------------------------------------------------------D 157 (408)
T ss_pred --------cc---------------------------------------------------------------------C
Confidence 00 1
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCcccee-----------eeeeccCceEEEE
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFI 1074 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~ilfI 1074 (1165)
| ++| +.|||||||||||++.+++.|. .|+|+||||++||+++|||.++. .|..++|.|||||
T Consensus 158 V-~rA-----erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFI 231 (408)
T COG1219 158 V-ERA-----ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFI 231 (408)
T ss_pred H-HHH-----hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEE
Confidence 2 444 7999999999999999887654 89999999999999999998876 2568999999999
Q ss_pred ecCCCCC-----------------------------------CCCCC-----CchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1075 ASGAFHL-----------------------------------AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1075 ~~gaf~~-----------------------------------~~p~d-----l~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|.|||.- -.|.| |||||.||+|+...|.+|++++|.+||+
T Consensus 232 cgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILt 311 (408)
T COG1219 232 CGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILT 311 (408)
T ss_pred eccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHh
Confidence 9999971 11333 7899999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeecc
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVII 1162 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar 1162 (1165)
+|+|++.+||+++|+.+||+|.|+++|+++||+.|.+..|||+-..+.
T Consensus 312 ePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI 359 (408)
T COG1219 312 EPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSI 359 (408)
T ss_pred cccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHH
Confidence 999999999999999999999999999999999999998888765443
No 22
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=9.2e-47 Score=479.47 Aligned_cols=365 Identities=22% Similarity=0.329 Sum_probs=282.6
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||..||++||++|+|+.|| |+ +|. +.+|+.+++..||++++.+|+.||+ +++.+|+.||+
T Consensus 298 l~~g~i~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~ 373 (852)
T TIGR03346 298 LARGELHCIGATTLDEYRKYIEKDAALERR--FQ-PVF-VDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSH 373 (852)
T ss_pred hhcCceEEEEeCcHHHHHHHhhcCHHHHhc--CC-EEE-eCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999999999999 99 676 9999999999999999999999999 89999999999
Q ss_pred HHhcccccchHH--HHhhhhhhhhhhhhcCCCCccCccc-----------------------------c-----------
Q psy2392 699 EWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPEN-----------------------------G----------- 736 (1165)
Q Consensus 699 ryi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~~~~~~-----------------------------~----------- 736 (1165)
||+++|+||||+ ++|++|+..+....+.+......+. .
T Consensus 374 ~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (852)
T TIGR03346 374 RYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADL 453 (852)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999965 5889998766531111100000000 0
Q ss_pred ------------------------------------------------------c------------cccccccccHHHH
Q psy2392 737 ------------------------------------------------------I------------GAIGSGGIFAQSA 750 (1165)
Q Consensus 737 ------------------------------------------------------i------------~~i~~~~~~~~~~ 750 (1165)
+ ..+....+....+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i 533 (852)
T TIGR03346 454 EEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEI 533 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHH
Confidence 0 0001123555678
Q ss_pred HHHhhhccCCChHHHH-HhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCCh
Q psy2392 751 AKALQENTELMPDEII-KKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGK 829 (1165)
Q Consensus 751 a~~l~~~t~~~~~~i~-~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GK 829 (1165)
+.+++.||++|...+. .+..+..++.+.|++.|+||+.|++.+..++... +.|+..+.+| .+.+||+|||||||
T Consensus 534 ~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--~~gl~~~~~p---~~~~Lf~Gp~GvGK 608 (852)
T TIGR03346 534 AEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--RAGLSDPNRP---IGSFLFLGPTGVGK 608 (852)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--hccCCCCCCC---CeEEEEEcCCCCCH
Confidence 8889999998887764 4677889999999999999999999999999866 6677666554 47899999999999
Q ss_pred hHHHHHHHHHc---CCCeEEEecCCcccc-----------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHH
Q psy2392 830 TEIARRLAKLS---NAPFIKIEATKFTEV-----------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 895 (1165)
Q Consensus 830 T~lAk~lA~~l---~~~fi~l~~se~~~~-----------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~ 895 (1165)
|++|+++|+.+ +.+|+++||++|.+. ||+|++.++.+++.
T Consensus 609 t~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~-------------------------- 662 (852)
T TIGR03346 609 TELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA-------------------------- 662 (852)
T ss_pred HHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH--------------------------
Confidence 99999999988 478999999997542 33333322211110
Q ss_pred HHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhC
Q psy2392 896 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 975 (1165)
Q Consensus 896 ~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1165)
T Consensus 663 -------------------------------------------------------------------------------- 662 (852)
T TIGR03346 663 -------------------------------------------------------------------------------- 662 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc
Q psy2392 976 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 1055 (1165)
Q Consensus 976 ~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E 1055 (1165)
+. .....|||+|||||+... +|+.||.++|
T Consensus 663 ------------------------------------v~-~~p~~vlllDeieka~~~-------------v~~~Ll~~l~ 692 (852)
T TIGR03346 663 ------------------------------------VR-RKPYSVVLFDEVEKAHPD-------------VFNVLLQVLD 692 (852)
T ss_pred ------------------------------------HH-cCCCcEEEEeccccCCHH-------------HHHHHHHHHh
Confidence 00 014569999999999765 9999999998
Q ss_pred Cccceeeee-eccCceEEEEecCCCCCC---C------------------CCCCchhhhccCCeEEEcCCCCHHHHHHHH
Q psy2392 1056 GTTVNTKYG-IIKTDHILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELDSLSISDFTRIM 1113 (1165)
Q Consensus 1056 g~~v~~k~~-~~~t~~ilfI~~gaf~~~---~------------------p~dl~pel~gR~~i~v~l~~l~~~~l~~il 1113 (1165)
.+.++...| .++..|.+||++...-.. + -..|.|||.+||..++.|.||+.+++.+|+
T Consensus 693 ~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~ 772 (852)
T TIGR03346 693 DGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIV 772 (852)
T ss_pred cCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHH
Confidence 776654334 577888899998775221 1 123789999999999999999999999999
Q ss_pred hhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCc
Q psy2392 1114 TSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE 1157 (1165)
Q Consensus 1114 ~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ 1157 (1165)
. ..+......++..|+.+.|+++++++|++..|+...+++
T Consensus 773 ~----l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR 812 (852)
T TIGR03346 773 E----IQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGAR 812 (852)
T ss_pred H----HHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCch
Confidence 9 455555566677899999999999999999997744443
No 23
>KOG0733|consensus
Probab=100.00 E-value=1.1e-45 Score=425.61 Aligned_cols=488 Identities=23% Similarity=0.355 Sum_probs=326.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.+.....+++.+.. ++++.....++.. +|.++|||||||||||.||+++|.+++.||+.+++.++++ ||.|+
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~-PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-GvSGE 266 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVR-PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-GVSGE 266 (802)
T ss_pred hhccChHHHHHHHHHHHHH-hcCchhHhhcCCC-CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-ccCcc
Confidence 3889999999999998765 5666555444432 4689999999999999999999999999999999999998 89999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++++|+++
T Consensus 267 S-EkkiRelF~~A------------------------------------------------------------------- 278 (802)
T KOG0733|consen 267 S-EKKIRELFDQA------------------------------------------------------------------- 278 (802)
T ss_pred c-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 9 55699999884
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.+. .++|
T Consensus 279 -----------------------------------------------------------------------~~~--aPci 285 (802)
T KOG0733|consen 279 -----------------------------------------------------------------------KSN--APCI 285 (802)
T ss_pred -----------------------------------------------------------------------hcc--CCeE
Confidence 111 3899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||.|+++++. .+.+.++.-| .+||..||+-... .-+++.+++|+++ ++|..+.|+|+ |||+..
T Consensus 286 vFiDeIDAI~pkRe~-aqreMErRiV-aQLlt~mD~l~~~----~~~g~~VlVIgAT----nRPDslDpaLRRaGRFdrE 355 (802)
T KOG0733|consen 286 VFIDEIDAITPKREE-AQREMERRIV-AQLLTSMDELSNE----KTKGDPVLVIGAT----NRPDSLDPALRRAGRFDRE 355 (802)
T ss_pred EEeecccccccchhh-HHHHHHHHHH-HHHHHhhhccccc----ccCCCCeEEEecC----CCCcccCHHHhccccccce
Confidence 999999999999886 4556666544 4689999874322 1135679999984 79999999998 899999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHH--------HHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTA--------MEK 572 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~--------ie~ 572 (1165)
|.+.-+++....+||. .+.+ |+.+.- +=..+.||+.... ..||. |..+ |.+
T Consensus 356 I~l~vP~e~aR~~IL~----~~~~---------~lrl~g-~~d~~qlA~lTPG------fVGAD-L~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 356 ICLGVPSETAREEILR----IICR---------GLRLSG-DFDFKQLAKLTPG------FVGAD-LMALCREAAFVAIKR 414 (802)
T ss_pred eeecCCchHHHHHHHH----HHHh---------hCCCCC-CcCHHHHHhcCCC------ccchh-HHHHHHHHHHHHHHH
Confidence 9999999999999994 2222 222211 1124566666644 35664 2222 222
Q ss_pred HHHHhhcccCCCeeEEcccccccccccCcccccccccccccccccCcceeeeecCCcccccCCccccccccccCcchHHH
Q psy2392 573 LLEEVSFNSNNISLLVDADYVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKV 652 (1165)
Q Consensus 573 ~l~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~~~~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~R 652 (1165)
++.+.+. |. .......|.+. +. +.++-.+|..|...+-. .+-|.-..+
T Consensus 415 ~ld~~~~--p~--------------~~~~~~ed~~~--~~------------~~~d~S~i~~~~~~~~~--~~ld~v~~~ 462 (802)
T KOG0733|consen 415 ILDQSSS--PL--------------TKVPISEDSSN--KD------------AEEDQSSIKITSNAERP--LELDRVVQD 462 (802)
T ss_pred HhhcccC--cc--------------ccCCccccccC--CC------------ccchhhhhhcCCccccc--ccHHHHHHH
Confidence 2211110 00 01111111110 00 00111233333222211 001100000
Q ss_pred HhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccC
Q psy2392 653 RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLE 732 (1165)
Q Consensus 653 R~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~ 732 (1165)
- +-+ ..+.+|.+ .+.+|.-.|++|
T Consensus 463 ~-i~~----~~d~~S~E----~~~~L~i~~eDF----------------------------------------------- 486 (802)
T KOG0733|consen 463 A-ILN----NPDPLSKE----LLEGLSIKFEDF----------------------------------------------- 486 (802)
T ss_pred H-HHh----CCCCcChH----HhccceecHHHH-----------------------------------------------
Confidence 0 000 01112211 112222222222
Q ss_pred ccccccccccccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCC
Q psy2392 733 PENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ 812 (1165)
Q Consensus 733 ~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~ 812 (1165)
..++....+.+ .+....+++..-|++|.|++++..++..+|..++|+..+......
T Consensus 487 ----~~Al~~iQPSa--------------------kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi 542 (802)
T KOG0733|consen 487 ----EEALSKIQPSA--------------------KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI 542 (802)
T ss_pred ----HHHHHhcCcch--------------------hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC
Confidence 11111111111 133333445556899999999999999999987766555443322
Q ss_pred CCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHH
Q psy2392 813 EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDA 892 (1165)
Q Consensus 813 ~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~ 892 (1165)
. .|.++|||||||||||.|||++|++.+.+|+.+-++++.++ |||++ +..+|.+|.+|+..
T Consensus 543 ~-~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk-YVGES-ErAVR~vFqRAR~s---------------- 603 (802)
T KOG0733|consen 543 D-APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK-YVGES-ERAVRQVFQRARAS---------------- 603 (802)
T ss_pred C-CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH-HhhhH-HHHHHHHHHHhhcC----------------
Confidence 1 27999999999999999999999999999999999999999 99999 57799998877333
Q ss_pred HHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHH
Q psy2392 893 AEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFS 972 (1165)
Q Consensus 893 a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1165)
T Consensus 604 -------------------------------------------------------------------------------- 603 (802)
T KOG0733|consen 604 -------------------------------------------------------------------------------- 603 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccc
Q psy2392 973 VIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLP 1052 (1165)
Q Consensus 973 ~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~ 1052 (1165)
.++|||+||||.++..++... +. ++.-|-+.||.
T Consensus 604 --------------------------------------------aPCVIFFDEiDaL~p~R~~~~-s~-~s~RvvNqLLt 637 (802)
T KOG0733|consen 604 --------------------------------------------APCVIFFDEIDALVPRRSDEG-SS-VSSRVVNQLLT 637 (802)
T ss_pred --------------------------------------------CCeEEEecchhhcCcccCCCC-ch-hHHHHHHHHHH
Confidence 567999999999999876422 22 33347888999
Q ss_pred cccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1053 LVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1053 ~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
-|+| .-.-..+++|+|+ ++|.-+.|+++ |||.-......+..+|...||+
T Consensus 638 ElDG--------l~~R~gV~viaAT----NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 638 ELDG--------LEERRGVYVIAAT----NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred Hhcc--------cccccceEEEeec----CCCcccchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 9986 3345567888886 58988889998 8999999999999999999999
No 24
>KOG0745|consensus
Probab=100.00 E-value=9.3e-45 Score=405.16 Aligned_cols=284 Identities=38% Similarity=0.640 Sum_probs=245.7
Q ss_pred hhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhccc------------C----CCC--------------------
Q psy2392 170 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT------------G----PLQ-------------------- 213 (1165)
Q Consensus 170 ~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~------------~----~~~-------------------- 213 (1165)
...+|+++.++|++.|+||+.||+.|..+++++|+|..-+ . ...
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 3478999999999999999999999999999998874210 0 000
Q ss_pred ----------CccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHH
Q psy2392 214 ----------QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFE 283 (1165)
Q Consensus 214 ----------~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~ 283 (1165)
......++||.||+|+|||.||+.||+.++.||...||+.+++.||+|++.+..+..|+..+.
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~------- 284 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAE------- 284 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHcc-------
Confidence 001147899999999999999999999999999999999999999999999998888887730
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchh
Q psy2392 284 INKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGME 363 (1165)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~ 363 (1165)
|
T Consensus 285 ----------------------------------------------------------------------~--------- 285 (564)
T KOG0745|consen 285 ----------------------------------------------------------------------Y--------- 285 (564)
T ss_pred ----------------------------------------------------------------------C---------
Confidence 0
Q ss_pred HHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC-CCc
Q psy2392 364 EMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTD 442 (1165)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~ 442 (1165)
+ ++.| +.|||||||+|||+++..+-+ .+|
T Consensus 286 --------------------------------------------n-----VekA-QqGIVflDEvDKi~~~~~~i~~~RD 315 (564)
T KOG0745|consen 286 --------------------------------------------N-----VEKA-QQGIVFLDEVDKITKKAESIHTSRD 315 (564)
T ss_pred --------------------------------------------C-----HHHH-hcCeEEEehhhhhcccCcccccccc
Confidence 0 1112 789999999999998876644 579
Q ss_pred cchhhhhhhhcccccCceeeee-----------ceeecCceEEEEEeCCccc--------------------C-------
Q psy2392 443 ISRAGVQRDLLPLVEGTTVNTK-----------YGIIKTDHILFIASGAFHL--------------------A------- 484 (1165)
Q Consensus 443 ~~~~~vq~~lL~~~Eg~~v~~~-----------~~~~~t~~ilfI~~gaf~~--------------------~------- 484 (1165)
+|+||||+.||.++||+.|+.. ...++|.||||||+|||.. +
T Consensus 316 VsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~ 395 (564)
T KOG0745|consen 316 VSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANM 395 (564)
T ss_pred ccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhc
Confidence 9999999999999999999871 2389999999999999971 0
Q ss_pred --------------------CCCC-----CchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEe
Q psy2392 485 --------------------KPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEF 539 (1165)
Q Consensus 485 --------------------~p~~-----l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~ 539 (1165)
.+.| ++|||.||||++|.|.+|++++|.+||++|+++|++||++++...+++|.|
T Consensus 396 ~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~f 475 (564)
T KOG0745|consen 396 ATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHF 475 (564)
T ss_pred ccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEe
Confidence 0111 889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe---eEEcccccc
Q psy2392 540 VDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADYVN 594 (1165)
Q Consensus 540 ~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~---~~i~~~~v~ 594 (1165)
+++|++.||+.|.. .+.|||.|+.++|++|.+.+|+.|.-. |.||.+.|.
T Consensus 476 Te~Al~~IAq~Al~-----r~TGARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~ 528 (564)
T KOG0745|consen 476 TEKALEAIAQLALK-----RKTGARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK 528 (564)
T ss_pred cHHHHHHHHHHHHh-----hccchHHHHHHHHHHHhhhcccCCCCceEEEEecHHHhc
Confidence 99999999999988 689999999999999999999999766 788988886
No 25
>KOG1051|consensus
Probab=100.00 E-value=3.1e-45 Score=449.58 Aligned_cols=387 Identities=21% Similarity=0.272 Sum_probs=318.4
Q ss_pred ccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh-----
Q psy2392 17 KFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG----- 89 (1165)
Q Consensus 17 ~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~----- 89 (1165)
.||+.|+| +|+||+|.||||||.+||++||++||||+|| || .+. |++||.++|+.||+|++.+||-||+
T Consensus 301 ~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErr--w~-l~~-v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~ 376 (898)
T KOG1051|consen 301 AIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERR--WQ-LVL-VPIPSVENLSLILPGLSERYEVHHGVRISD 376 (898)
T ss_pred HHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhC--cc-eeE-eccCcccchhhhhhhhhhhhccccCCcccc
Confidence 78999999 9999999999999999999999999999999 99 787 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCccc-------ccccccc----------------
Q psy2392 90 NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPEN-------GIGAIGS---------------- 144 (1165)
Q Consensus 90 ~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~-------~~~~~~~---------------- 144 (1165)
.++..++.+|.+|++.|++||+ ++.|+||+..+....+-|+....++. .+..+..
T Consensus 377 ~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~ 456 (898)
T KOG1051|consen 377 ESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLA 456 (898)
T ss_pred cccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhcccccccccc
Confidence 9999999999999999999997 55899999988633222211000000 0000000
Q ss_pred --------------------------------cc---------hh-------------------------hHHHHHHhhh
Q psy2392 145 --------------------------------GG---------IF-------------------------AQSAAKALQE 158 (1165)
Q Consensus 145 --------------------------------~~---------~~-------------------------~~~va~~l~~ 158 (1165)
.. ++ .-.+++..+.
T Consensus 457 ~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~ 536 (898)
T KOG1051|consen 457 PSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSR 536 (898)
T ss_pred ccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhh
Confidence 00 00 0044555678
Q ss_pred ccccCchhhhh-hhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHH
Q psy2392 159 NTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARR 237 (1165)
Q Consensus 159 ~t~l~~~~i~~-~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~ 237 (1165)
||++|...... +..+...|.+.|.+.|+||++|+.+|..+|... +.|+..+ .| ...|+|.||+|+|||.||++
T Consensus 537 ~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--r~gl~~~-~~---~awflflGpdgvGKt~lAka 610 (898)
T KOG1051|consen 537 WTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--RAGLKDP-NP---DAWFLFLGPDGVGKTELAKA 610 (898)
T ss_pred hcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--hcccCCC-CC---CeEEEEECCCchhHHHHHHH
Confidence 88888877765 348899999999999999999999999999987 7777776 33 48999999999999999999
Q ss_pred HHHHh---CCCceEEecccccc--------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCC
Q psy2392 238 LAKLS---NAPFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPS 306 (1165)
Q Consensus 238 lA~~l---~~~~i~ld~s~~~~--------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 306 (1165)
||+.+ ...|+++||++|++ |||+|+.+++.+++.++.
T Consensus 611 LA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrr-------------------------------- 658 (898)
T KOG1051|consen 611 LAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR-------------------------------- 658 (898)
T ss_pred HHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhc--------------------------------
Confidence 99999 57899999999665 799999988777766654
Q ss_pred CcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCcccccee
Q psy2392 307 KEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKI 386 (1165)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1165)
T Consensus 659 -------------------------------------------------------------------------------- 658 (898)
T KOG1051|consen 659 -------------------------------------------------------------------------------- 658 (898)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece
Q psy2392 387 KIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466 (1165)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~ 466 (1165)
.|++|||||||||.++. ||+-||+++|.+.++..+|
T Consensus 659 -------------------------------rP~sVVLfdeIEkAh~~-------------v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 659 -------------------------------RPYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred -------------------------------CCceEEEEechhhcCHH-------------HHHHHHHHHhcCccccCCC
Confidence 27899999999999987 8889999999988888777
Q ss_pred -eecCceEEEEEeCCccc--------------------------------CCC----CCCchhhhCCCCeeEecCCCCHH
Q psy2392 467 -IIKTDHILFIASGAFHL--------------------------------AKP----SDLIPELQGRFPIRVELDSLSIS 509 (1165)
Q Consensus 467 -~~~t~~ilfI~~gaf~~--------------------------------~~p----~~l~pel~~R~~~~v~~~~L~~~ 509 (1165)
.|+..|++||+|.+... .-+ ..+.|||.+|++..+.|.+|+.+
T Consensus 695 r~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~ 774 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRD 774 (898)
T ss_pred cEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchh
Confidence 88999999999844310 002 56889999999999999999999
Q ss_pred HHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 510 DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 510 ~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.+|+ ...+......++..++.+.+++.+.++++..+|+ +++|||++++.|++.+++..
T Consensus 775 ~~~~i~----~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d-----~~ygAr~ikr~i~~~~~~~l 834 (898)
T KOG1051|consen 775 ELIEIV----NKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYD-----FDYGARPIKRSIEERFENRL 834 (898)
T ss_pred hHhhhh----hhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcC-----hHHHhhHHHHHHHHHHHHHH
Confidence 999998 4555555555666678889999999999999999 58999999999998887654
No 26
>KOG0745|consensus
Probab=100.00 E-value=8.4e-44 Score=397.52 Aligned_cols=255 Identities=39% Similarity=0.667 Sum_probs=218.5
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-----------C---------------------------
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-----------L--------------------------- 810 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-----------~--------------------------- 810 (1165)
.-+|+++.+.|+++|+||+.||+.|..+++++|+|..-+.. .
T Consensus 133 ~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~ 212 (564)
T KOG0745|consen 133 PPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA 212 (564)
T ss_pred CCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence 45789999999999999999999999999999987643100 0
Q ss_pred --------CCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHH
Q psy2392 811 --------QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 882 (1165)
Q Consensus 811 --------~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~ 882 (1165)
-....+.++||.||+|+|||.||+.||+.++.||...||+.+++.||||++.+..+.+|+..|-.
T Consensus 213 ~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~------- 285 (564)
T KOG0745|consen 213 KALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEY------- 285 (564)
T ss_pred ccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccC-------
Confidence 00113479999999999999999999999999999999999999999999998888777554411
Q ss_pred HHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHH
Q psy2392 883 NKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEE 962 (1165)
Q Consensus 883 ~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~ 962 (1165)
T Consensus 286 -------------------------------------------------------------------------------- 285 (564)
T KOG0745|consen 286 -------------------------------------------------------------------------------- 285 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCC-CCCCc
Q psy2392 963 MTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDI 1041 (1165)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~-~~~~~ 1041 (1165)
+| ++| |.|||||||+|||++..++- .+.|+
T Consensus 286 -------------------------------------------nV-ekA-----QqGIVflDEvDKi~~~~~~i~~~RDV 316 (564)
T KOG0745|consen 286 -------------------------------------------NV-EKA-----QQGIVFLDEVDKITKKAESIHTSRDV 316 (564)
T ss_pred -------------------------------------------CH-HHH-----hcCeEEEehhhhhcccCccccccccc
Confidence 12 344 88999999999999876653 44799
Q ss_pred cchhhhhhccccccCcccee--e---------eeeccCceEEEEecCCCCC-----------------------------
Q psy2392 1042 SRAGVQRDLLPLVEGTTVNT--K---------YGIIKTDHILFIASGAFHL----------------------------- 1081 (1165)
Q Consensus 1042 ~~~gvq~~lL~~~Eg~~v~~--k---------~~~~~t~~ilfI~~gaf~~----------------------------- 1081 (1165)
|+||||+.||+++||+.|+. | ...++|.||||||+|||.-
T Consensus 317 sGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~ 396 (564)
T KOG0745|consen 317 SGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMA 396 (564)
T ss_pred cchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcc
Confidence 99999999999999999986 2 2389999999999999971
Q ss_pred ------------------CCCCC-----CchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeC
Q psy2392 1082 ------------------AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV 1138 (1165)
Q Consensus 1082 ------------------~~p~d-----l~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~ 1138 (1165)
..+.| |||||.|||||.|.|.+|++++|.+||+||.|+|++||+.+|+..+|+|.||
T Consensus 397 ~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fT 476 (564)
T KOG0745|consen 397 TKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFT 476 (564)
T ss_pred cccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEec
Confidence 01122 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcCCcee
Q psy2392 1139 DDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1139 ~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
++|++.||+.|...+|||+-.
T Consensus 477 e~Al~~IAq~Al~r~TGARgL 497 (564)
T KOG0745|consen 477 EKALEAIAQLALKRKTGARGL 497 (564)
T ss_pred HHHHHHHHHHHHhhccchHHH
Confidence 999999999999997777643
No 27
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=3.9e-39 Score=377.13 Aligned_cols=286 Identities=37% Similarity=0.644 Sum_probs=240.9
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCC--CCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPL--QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~--~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..+|.++.+.|++.|+||++|++.+..++.++|++....... .......++||+||||||||++|++||+.++.||++
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 478999999999999999999999999999887776332110 112234799999999999999999999999999999
Q ss_pred EeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHH
Q psy2392 249 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 328 (1165)
Q Consensus 249 ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1165)
++++.+..+||+|.+.+..++.++..+
T Consensus 139 id~~~l~~~gyvG~d~e~~l~~l~~~~----------------------------------------------------- 165 (412)
T PRK05342 139 ADATTLTEAGYVGEDVENILLKLLQAA----------------------------------------------------- 165 (412)
T ss_pred cchhhcccCCcccchHHHHHHHHHHhc-----------------------------------------------------
Confidence 999999999999998777665555431
Q ss_pred HHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhH
Q psy2392 329 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408 (1165)
Q Consensus 329 ~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1165)
.+.
T Consensus 166 ------~~~----------------------------------------------------------------------- 168 (412)
T PRK05342 166 ------DYD----------------------------------------------------------------------- 168 (412)
T ss_pred ------ccc-----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhhccceEEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeee-----------eceeecCceEEEE
Q psy2392 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFI 476 (1165)
Q Consensus 409 ~~~~a~~~~~~~~IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~-----------~~~~~~t~~ilfI 476 (1165)
+.. .++|||||||||+++++..+. .+.|+|+++||+.||.+|||+.++. .+..++|+||+||
T Consensus 169 -----~~~-a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi 242 (412)
T PRK05342 169 -----VEK-AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFI 242 (412)
T ss_pred -----HHH-cCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceee
Confidence 011 158999999999999885543 3689999999999999999987654 1347999999999
Q ss_pred EeCCccc------------------C---C--------------CC-----CCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 477 ASGAFHL------------------A---K--------------PS-----DLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 477 ~~gaf~~------------------~---~--------------p~-----~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+|||.. . + |. .|+|||+||+|.+|.|++|+++++.+|++
T Consensus 243 ~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 243 CGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred ecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHH
Confidence 9999862 0 0 11 17999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEcccc
Q psy2392 517 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADY 592 (1165)
Q Consensus 517 ~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~ 592 (1165)
++.+.+++|++++++.+|++|.|+++++++|++.||+ ..+|||+|+++|++.+.+.+|+.|... ++||+++
T Consensus 323 ~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~-----~~~GAR~Lrriie~~l~~~~~~~p~~~~~~~v~I~~~~ 397 (412)
T PRK05342 323 EPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIE-----RKTGARGLRSILEEILLDVMFELPSREDVEKVVITKEV 397 (412)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCC-----CCCCCchHHHHHHHHhHHHHHhccccCCCceEEECHHH
Confidence 9999999999999999999999999999999999988 589999999999999999999999752 8899999
Q ss_pred ccccc
Q psy2392 593 VNSRL 597 (1165)
Q Consensus 593 v~~~~ 597 (1165)
|....
T Consensus 398 v~~~~ 402 (412)
T PRK05342 398 VEGKA 402 (412)
T ss_pred hcccc
Confidence 97653
No 28
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=3.9e-39 Score=375.09 Aligned_cols=286 Identities=37% Similarity=0.625 Sum_probs=241.1
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhccc--CCCCC--ccCCcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT--GPLQQ--EITPKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~--~~~~~--~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
..+|.++.+.|++.|+||++|++.+..++.++|++.... ....+ ....+++||+||||||||++|++||+.++.||
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 368999999999999999999999999999998776441 11111 12247999999999999999999999999999
Q ss_pred eEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhH
Q psy2392 247 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 326 (1165)
Q Consensus 247 i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 326 (1165)
..++++.+..+||+|++.++.+..++..+
T Consensus 145 ~~~da~~L~~~gyvG~d~e~~L~~~~~~~--------------------------------------------------- 173 (413)
T TIGR00382 145 AIADATTLTEAGYVGEDVENILLKLLQAA--------------------------------------------------- 173 (413)
T ss_pred EEechhhccccccccccHHHHHHHHHHhC---------------------------------------------------
Confidence 99999999889999998777676665441
Q ss_pred HHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcCh
Q psy2392 327 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 406 (1165)
Q Consensus 327 ~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1165)
.+
T Consensus 174 --------~~---------------------------------------------------------------------- 175 (413)
T TIGR00382 174 --------DY---------------------------------------------------------------------- 175 (413)
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred hHHHHHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeee-----------eceeecCceEE
Q psy2392 407 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHIL 474 (1165)
Q Consensus 407 ~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~-----------~~~~~~t~~il 474 (1165)
.+.. .++||||||||||++++..+.+ +.|+|+++||+.||+++||+.++. .+..++|+||+
T Consensus 176 ------~l~~-a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNil 248 (413)
T TIGR00382 176 ------DVEK-AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNIL 248 (413)
T ss_pred ------cHHh-cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCce
Confidence 0001 1578999999999998765533 689999999999999999877642 23489999999
Q ss_pred EEEeCCcccC--------------------CC------------------CCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 475 FIASGAFHLA--------------------KP------------------SDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 475 fI~~gaf~~~--------------------~p------------------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|||+|||... .+ ..|+|||+||+|++|.|++|+.+++.+|++
T Consensus 249 fi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~ 328 (413)
T TIGR00382 249 FICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT 328 (413)
T ss_pred eeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHH
Confidence 9999999510 00 028899999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEcccc
Q psy2392 517 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADY 592 (1165)
Q Consensus 517 ~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~ 592 (1165)
.+.+.+++|++++++.+|++|.|+++|+++|++.|++ +.+|||+|+++|++.+.+.+|+.|... ++||+++
T Consensus 329 ~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~-----~~~GAR~Lr~iie~~l~~~m~e~p~~~~~~~v~i~~~~ 403 (413)
T TIGR00382 329 KPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALE-----RKTGARGLRSIVEGLLLDVMFDLPSLEDLEKVVITKET 403 (413)
T ss_pred HHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCC-----CCCCchHHHHHHHHhhHHHHhhCCCCCCCcEEEECHHH
Confidence 9999999999999999999999999999999999998 689999999999999999999999864 7899999
Q ss_pred ccccc
Q psy2392 593 VNSRL 597 (1165)
Q Consensus 593 v~~~~ 597 (1165)
|+...
T Consensus 404 v~~~~ 408 (413)
T TIGR00382 404 VLKQS 408 (413)
T ss_pred HcCcC
Confidence 97653
No 29
>KOG0730|consensus
Probab=100.00 E-value=1.9e-36 Score=355.39 Aligned_cols=426 Identities=23% Similarity=0.369 Sum_probs=305.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
..+.|.......+...+..+.+...++...+.. .|.++|+|||||||||.+++++|++.+..++.++++++.+. |.|+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~-~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k-~~gE 261 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIK-PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK-FPGE 261 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCC-CCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHh-cccc
Confidence 477888888899999988877666665443332 36899999999999999999999999999999999998874 7777
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ++.++..|+.+.
T Consensus 262 t-e~~LR~~f~~a~------------------------------------------------------------------ 274 (693)
T KOG0730|consen 262 T-ESNLRKAFAEAL------------------------------------------------------------------ 274 (693)
T ss_pred h-HHHHHHHHHHHh------------------------------------------------------------------
Confidence 7 566888887730
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
+ ...+.|
T Consensus 275 -----------------------------------------------------------k--------------~~~psi 281 (693)
T KOG0730|consen 275 -----------------------------------------------------------K--------------FQVPSI 281 (693)
T ss_pred -----------------------------------------------------------c--------------cCCCee
Confidence 0 012789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh-CCCCeeE
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFPIRV 501 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~-~R~~~~v 501 (1165)
+||||||.+++++....+ ++++ +-.+|+.+++|-. ...++++|++ +++|..+.|.|+ ||||..|
T Consensus 282 i~IdEld~l~p~r~~~~~--~e~R-v~sqlltL~dg~~--------~~~~vivl~a----tnrp~sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 282 IFIDELDALCPKREGADD--VESR-VVSQLLTLLDGLK--------PDAKVIVLAA----TNRPDSLDPALRRGRFDREV 346 (693)
T ss_pred EeHHhHhhhCCcccccch--HHHH-HHHHHHHHHhhCc--------CcCcEEEEEe----cCCccccChhhhcCCCccee
Confidence 999999999998776333 3333 4457999999732 3567888887 478999999999 7999999
Q ss_pred ecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhccc
Q psy2392 502 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNS 581 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~ 581 (1165)
++.-++..+...||+ .+ ++++++. ++..+..+|..+.. ..||. |-.++ ...+
T Consensus 347 ~IgiP~~~~RldIl~----~l---------~k~~~~~-~~~~l~~iA~~thG------yvGaD-L~~l~----~ea~--- 398 (693)
T KOG0730|consen 347 EIGIPGSDGRLDILR----VL---------TKKMNLL-SDVDLEDIAVSTHG------YVGAD-LAALC----REAS--- 398 (693)
T ss_pred eecCCCchhHHHHHH----HH---------HHhcCCc-chhhHHHHHHHccc------hhHHH-HHHHH----HHHH---
Confidence 999999999999984 12 1233333 56667777776654 24442 11111 0000
Q ss_pred CCCeeEEcccccccccccCcccccccccccccccccCcceeeeecCCcccccCCccccccccccCcchHHHHhhhhcccc
Q psy2392 582 NNISLLVDADYVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVL 661 (1165)
Q Consensus 582 ~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~~~~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi 661 (1165)
++ .+-
T Consensus 399 --------------------------------------------------------------------------~~-~~r 403 (693)
T KOG0730|consen 399 --------------------------------------------------------------------------LQ-ATR 403 (693)
T ss_pred --------------------------------------------------------------------------HH-Hhh
Confidence 11 000
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccCccccccccc
Q psy2392 662 AGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIG 741 (1165)
Q Consensus 662 ~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~~~~~i~~i~ 741 (1165)
...+.+. .+.. .
T Consensus 404 ------------------~~~~~~~----------------------~A~~-----~----------------------- 415 (693)
T KOG0730|consen 404 ------------------RTLEIFQ----------------------EALM-----G----------------------- 415 (693)
T ss_pred ------------------hhHHHHH----------------------HHHh-----c-----------------------
Confidence 0000000 0000 0
Q ss_pred cccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEE
Q psy2392 742 SGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILM 821 (1165)
Q Consensus 742 ~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL 821 (1165)
+-|+.+ +...-+..+.-|++|.|++++|+.|.++|.++.+....+.... ..+|+++||
T Consensus 416 ------------------i~psa~---Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLl 473 (693)
T KOG0730|consen 416 ------------------IRPSAL---REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLL 473 (693)
T ss_pred ------------------CCchhh---hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEE
Confidence 000000 1111222334468999999999999999987654332222111 123799999
Q ss_pred EccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhh
Q psy2392 822 IGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDIL 901 (1165)
Q Consensus 822 ~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~l 901 (1165)
|||||||||++||++|++.+.+|+.+.++++.++ |+|++ +..++++|++|++.
T Consensus 474 yGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk-~vGeS-Er~ir~iF~kAR~~------------------------- 526 (693)
T KOG0730|consen 474 YGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK-YVGES-ERAIREVFRKARQV------------------------- 526 (693)
T ss_pred ECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH-hcCch-HHHHHHHHHHHhhc-------------------------
Confidence 9999999999999999999999999999999999 99999 57799999888332
Q ss_pred cCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccc
Q psy2392 902 VPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 981 (1165)
Q Consensus 902 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1165)
T Consensus 527 -------------------------------------------------------------------------------- 526 (693)
T KOG0730|consen 527 -------------------------------------------------------------------------------- 526 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
.++|||+||||.|+++++++++ +++. -|-..||.-|+|
T Consensus 527 -----------------------------------aP~IiFfDEiDsi~~~R~g~~~-~v~~-RVlsqLLtEmDG----- 564 (693)
T KOG0730|consen 527 -----------------------------------APCIIFFDEIDALAGSRGGSSS-GVTD-RVLSQLLTEMDG----- 564 (693)
T ss_pred -----------------------------------CCeEEehhhHHhHhhccCCCcc-chHH-HHHHHHHHHccc-----
Confidence 4679999999999999875333 3332 366778888886
Q ss_pred eeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1062 KYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
...-.|++.||++ +.|..+.|+|++ ||.-.+.+++++.+--.+||+
T Consensus 565 ---~e~~k~V~ViAAT----NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 565 ---LEALKNVLVIAAT----NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred ---ccccCcEEEEecc----CChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence 3334689999996 599999999996 999999999999999999998
No 30
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=5.4e-36 Score=350.74 Aligned_cols=255 Identities=38% Similarity=0.668 Sum_probs=211.7
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCC--CCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPL--QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~--~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+|.++.+.|++.|+||++|++.+..++..+|++....... .......++||+||||||||++|+++|+.++.||+.
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 468999999999999999999999999999888776432110 112235899999999999999999999999999999
Q ss_pred EecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHH
Q psy2392 847 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 926 (1165)
Q Consensus 847 l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~ 926 (1165)
+|++.+++.||+|.+.+..+..++..+
T Consensus 139 id~~~l~~~gyvG~d~e~~l~~l~~~~----------------------------------------------------- 165 (412)
T PRK05342 139 ADATTLTEAGYVGEDVENILLKLLQAA----------------------------------------------------- 165 (412)
T ss_pred cchhhcccCCcccchHHHHHHHHHHhc-----------------------------------------------------
Confidence 999999999999998766555443221
Q ss_pred HHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
.+ .
T Consensus 166 ------~~-----------------------------------------------------------------------~ 168 (412)
T PRK05342 166 ------DY-----------------------------------------------------------------------D 168 (412)
T ss_pred ------cc-----------------------------------------------------------------------c
Confidence 00 0
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCcccee-----------eeeeccCceEEEE
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFI 1074 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~ilfI 1074 (1165)
+ +.| ++|||||||||++...+.+. .+.|+|++|||+.||.+|||+.++. .+..++|.|||||
T Consensus 169 ~-~~a-----~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi 242 (412)
T PRK05342 169 V-EKA-----QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFI 242 (412)
T ss_pred H-HHc-----CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceee
Confidence 0 122 67999999999999875433 4579999999999999999987654 2458999999999
Q ss_pred ecCCCCC------------------C-----------------CCC-----CCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1075 ASGAFHL------------------A-----------------KPS-----DLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1075 ~~gaf~~------------------~-----------------~p~-----dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+|||.. . .|. .|+|||+||+|++|.|.+|++++|.+|++
T Consensus 243 ~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 243 CGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred ecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHH
Confidence 9999972 0 011 17899999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
+|.+.+++||+++++.+|++|.|+++|+++||+.||+.++||+++
T Consensus 323 ~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 323 EPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 999999999999999999999999999999999999996666654
No 31
>KOG1051|consensus
Probab=100.00 E-value=1.5e-35 Score=364.43 Aligned_cols=396 Identities=20% Similarity=0.244 Sum_probs=283.0
Q ss_pred eeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHH
Q psy2392 623 SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELA 697 (1165)
Q Consensus 623 aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS 697 (1165)
+|+||.+.||||||.+||++||++|||++|| || .+. |.+|+.++|..||++++.+||-||| +++..++.+|
T Consensus 311 ~L~rg~l~~IGatT~e~Y~k~iekdPalErr--w~-l~~-v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s 386 (898)
T KOG1051|consen 311 LLARGGLWCIGATTLETYRKCIEKDPALERR--WQ-LVL-VPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLS 386 (898)
T ss_pred HHhcCCeEEEecccHHHHHHHHhhCcchhhC--cc-eeE-eccCcccchhhhhhhhhhhhccccCCcccccccccccchh
Confidence 4678889999999999999999999999999 99 788 9999999999999999999999999 9999999999
Q ss_pred HHHhcccccchH--HHHhhhhhhhhhhhhcCCC--------C-c-----cCcccccc-----------------------
Q psy2392 698 KEWRNDRTLRRL--EAMLLTANRETTLIITGNG--------D-V-----LEPENGIG----------------------- 738 (1165)
Q Consensus 698 ~ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~--------~-~-----~~~~~~i~----------------------- 738 (1165)
.+|++.|++||+ ++.+++++..+....+-+. . . .+....+.
T Consensus 387 ~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~ 466 (898)
T KOG1051|consen 387 ARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLS 466 (898)
T ss_pred hhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccch
Confidence 999999999995 5578877765542111000 0 0 00000000
Q ss_pred -----------cccc-------cc---------c-------------------------cHHHHHHHhhhccCCChHHH-
Q psy2392 739 -----------AIGS-------GG---------I-------------------------FAQSAAKALQENTELMPDEI- 765 (1165)
Q Consensus 739 -----------~i~~-------~~---------~-------------------------~~~~~a~~l~~~t~~~~~~i- 765 (1165)
.+.. .. . ....++.....||+.+....
T Consensus 467 ~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~ 546 (898)
T KOG1051|consen 467 ASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLA 546 (898)
T ss_pred hhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhh
Confidence 0000 00 0 00134445566777666554
Q ss_pred HHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CC
Q psy2392 766 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NA 842 (1165)
Q Consensus 766 ~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~ 842 (1165)
..+..+...|.+.|.+.|+||++|+..|..+|... +.|+..+ . +...|+|.||+|+|||.+|++||+.+ ..
T Consensus 547 ~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--r~gl~~~-~---~~awflflGpdgvGKt~lAkaLA~~~Fgse~ 620 (898)
T KOG1051|consen 547 EAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--RAGLKDP-N---PDAWFLFLGPDGVGKTELAKALAEYVFGSEE 620 (898)
T ss_pred hhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--hcccCCC-C---CCeEEEEECCCchhHHHHHHHHHHHHcCCcc
Confidence 34678999999999999999999999999999976 7777665 2 25899999999999999999999998 57
Q ss_pred CeEEEecCCccc--------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCcccc
Q psy2392 843 PFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDF 914 (1165)
Q Consensus 843 ~fi~l~~se~~~--------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~ 914 (1165)
.|+++||++|.+ +||+|+..++.+++.+ +.+||++++++++|+||+.+.+.|+|
T Consensus 621 ~~IriDmse~~evskligsp~gyvG~e~gg~Lteav-------rrrP~sVVLfdeIEkAh~~v~n~llq----------- 682 (898)
T KOG1051|consen 621 NFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAV-------KRRPYSVVLFEEIEKAHPDVLNILLQ----------- 682 (898)
T ss_pred ceEEechhhhhhhhhccCCCcccccchhHHHHHHHH-------hcCCceEEEEechhhcCHHHHHHHHH-----------
Confidence 799999999654 6999999888777753 45799999999999999999999977
Q ss_pred CCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHH
Q psy2392 915 NNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLI 994 (1165)
Q Consensus 915 ~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~ 994 (1165)
++++||+-|. +.+.++
T Consensus 683 ---------------~lD~GrltDs----------------------------------------~Gr~Vd--------- 698 (898)
T KOG1051|consen 683 ---------------LLDRGRLTDS----------------------------------------HGREVD--------- 698 (898)
T ss_pred ---------------HHhcCccccC----------------------------------------CCcEee---------
Confidence 5788888322 111111
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcc-----ccccCccc-ee--eeeec
Q psy2392 995 DEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL-----PLVEGTTV-NT--KYGII 1066 (1165)
Q Consensus 995 ~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL-----~~~Eg~~v-~~--k~~~~ 1066 (1165)
+ .+.||+. +++. +++. +-++.. --.++... .. +--..
T Consensus 699 ------------~---------kN~I~IM-------Tsn~---~~~~----i~~~~~~~~~l~~~~~~~~~~~~~k~~v~ 743 (898)
T KOG1051|consen 699 ------------F---------KNAIFIM-------TSNV---GSSA----IANDASLEEKLLDMDEKRGSYRLKKVQVS 743 (898)
T ss_pred ------------c---------cceEEEE-------eccc---chHh----hhcccccccccccchhhhhhhhhhhhhhh
Confidence 0 4455543 3211 1121 112211 01111111 00 00011
Q ss_pred cCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHH
Q psy2392 1067 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 1146 (1165)
Q Consensus 1067 ~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia 1146 (1165)
+... | .+++.+.|||++|+.-.+.|.+|+.+++.+|+..+ +..-..-++..++.+.+++.+...++
T Consensus 744 ~~~~---~-------~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~----~~e~~~r~~~~~~~~~v~~~~~~~v~ 809 (898)
T KOG1051|consen 744 DAVR---I-------YNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQ----LTEIEKRLEERELLLLVTDRVDDKVL 809 (898)
T ss_pred hhhh---c-------ccccccChHHhcccceeeeecccchhhHhhhhhhH----HHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 1111 1 12267899999999999999999999999998833 33333344555578899999999999
Q ss_pred HHHhccCcCCcee
Q psy2392 1147 EIAYCINERTENI 1159 (1165)
Q Consensus 1147 ~~a~~~~~~~~ni 1159 (1165)
...|+-++++++|
T Consensus 810 ~~~~d~~ygAr~i 822 (898)
T KOG1051|consen 810 FKGYDFDYGARPI 822 (898)
T ss_pred hcCcChHHHhhHH
Confidence 9999997777765
No 32
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=3e-35 Score=342.68 Aligned_cols=256 Identities=39% Similarity=0.659 Sum_probs=211.1
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhccc--CCCCC--CCCCceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT--GPLQQ--EITPKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~--~~~~~--~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
..+|.++++.|++.|+||++|++.+..++.++|++.... ....+ ...++++||+||||||||++|+++|+.++.||
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 357899999999999999999999999999998887541 11101 12357999999999999999999999999999
Q ss_pred EEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhH
Q psy2392 845 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 924 (1165)
Q Consensus 845 i~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r 924 (1165)
..++++.+..+||+|++.+..+..++..+
T Consensus 145 ~~~da~~L~~~gyvG~d~e~~L~~~~~~~--------------------------------------------------- 173 (413)
T TIGR00382 145 AIADATTLTEAGYVGEDVENILLKLLQAA--------------------------------------------------- 173 (413)
T ss_pred EEechhhccccccccccHHHHHHHHHHhC---------------------------------------------------
Confidence 99999999989999998666655543221
Q ss_pred HHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCH
Q psy2392 925 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 1004 (1165)
Q Consensus 925 ~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~ 1004 (1165)
++
T Consensus 174 --------~~---------------------------------------------------------------------- 175 (413)
T TIGR00382 174 --------DY---------------------------------------------------------------------- 175 (413)
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhhhcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCcccee-----------eeeeccCceEE
Q psy2392 1005 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHIL 1072 (1165)
Q Consensus 1005 ~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~il 1072 (1165)
.+ +.| ++||||||||||+....++. .+.|+|++|||+.||.++||+.++. .+..++|+|||
T Consensus 176 -~l-~~a-----~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNil 248 (413)
T TIGR00382 176 -DV-EKA-----QKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNIL 248 (413)
T ss_pred -cH-Hhc-----ccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCce
Confidence 00 112 67999999999999875443 4579999999999999999977642 23589999999
Q ss_pred EEecCCCCC---------C-----------C-------------CC-----CCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1073 FIASGAFHL---------A-----------K-------------PS-----DLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1073 fI~~gaf~~---------~-----------~-------------p~-----dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||+|||.- . . |. .|+|||+||+|++|.|.||+.++|.+|++
T Consensus 249 fi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~ 328 (413)
T TIGR00382 249 FICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT 328 (413)
T ss_pred eeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHH
Confidence 999999951 0 0 00 27899999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
+|.+.+++||+++++.+|++|.|+++|+++||+.||+.++||+++-
T Consensus 329 ~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr 374 (413)
T TIGR00382 329 KPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLR 374 (413)
T ss_pred HHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHH
Confidence 9999999999999999999999999999999999999966666543
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.5e-33 Score=348.78 Aligned_cols=180 Identities=25% Similarity=0.391 Sum_probs=140.9
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-|++|+|++.+++.|.+.+.++++...+...... ..|.++|||||||||||++|+++|++++.+|+.++++++.++ |+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~-~v 528 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WV 528 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc-cc
Confidence 4578999999999999998865544433322111 126899999999999999999999999999999999999888 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|++ +..++++|..|...
T Consensus 529 Ges-e~~i~~~f~~A~~~-------------------------------------------------------------- 545 (733)
T TIGR01243 529 GES-EKAIREIFRKARQA-------------------------------------------------------------- 545 (733)
T ss_pred CcH-HHHHHHHHHHHHhc--------------------------------------------------------------
Confidence 998 45688887666111
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
++
T Consensus 546 ------------------------------------------------------------------------------~p 547 (733)
T TIGR01243 546 ------------------------------------------------------------------------------AP 547 (733)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 56
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
+||||||||+|+...++..+..+ ...+...||..++|. ...+++++|+++ +.|+.+.|+++ |||.
T Consensus 548 ~iifiDEid~l~~~r~~~~~~~~-~~~~~~~lL~~ldg~--------~~~~~v~vI~aT----n~~~~ld~allRpgRfd 614 (733)
T TIGR01243 548 AIIFFDEIDAIAPARGARFDTSV-TDRIVNQLLTEMDGI--------QELSNVVVIAAT----NRPDILDPALLRPGRFD 614 (733)
T ss_pred EEEEEEChhhhhccCCCCCCccH-HHHHHHHHHHHhhcc--------cCCCCEEEEEeC----CChhhCCHhhcCCCccc
Confidence 89999999999987543222222 233566788888862 234678899886 58999999998 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++++.++.++..+|++
T Consensus 615 ~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 615 RLILVPPPDEEARKEIFK 632 (733)
T ss_pred eEEEeCCcCHHHHHHHHH
Confidence 999999999999999987
No 34
>KOG0736|consensus
Probab=99.94 E-value=5.3e-26 Score=269.25 Aligned_cols=209 Identities=20% Similarity=0.361 Sum_probs=154.5
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-CCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
+.-|++|.|.+++|..|.+.|..+++...++.. +++ ..++|||||||||||.+||++|.++..+|+.+.++|+.+.
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrk---RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRK---RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccc---cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 345799999999999999999988777766553 333 3799999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|||++++ .+|++|++|+..
T Consensus 745 -YVGqSE~-NVR~VFerAR~A----------------------------------------------------------- 763 (953)
T KOG0736|consen 745 -YVGQSEE-NVREVFERARSA----------------------------------------------------------- 763 (953)
T ss_pred -HhcchHH-HHHHHHHHhhcc-----------------------------------------------------------
Confidence 9999954 599999888322
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 764 -------------------------------------------------------------------------------- 763 (953)
T KOG0736|consen 764 -------------------------------------------------------------------------------- 763 (953)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCC--CCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQ--NNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 1092 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~--~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~- 1092 (1165)
.++|||+||+|.++.+++. +|| .+ ..-|-..||.-++|-.-. +++.+.+|+|+ ++|.=|.|.|+
T Consensus 764 -~PCVIFFDELDSlAP~RG~sGDSG-GV-MDRVVSQLLAELDgls~~------~s~~VFViGAT----NRPDLLDpALLR 830 (953)
T KOG0736|consen 764 -APCVIFFDELDSLAPNRGRSGDSG-GV-MDRVVSQLLAELDGLSDS------SSQDVFVIGAT----NRPDLLDPALLR 830 (953)
T ss_pred -CCeEEEeccccccCccCCCCCCcc-cc-HHHHHHHHHHHhhcccCC------CCCceEEEecC----CCccccChhhcC
Confidence 5789999999999998653 222 22 123556788888873221 34455566664 58877889998
Q ss_pred -ccCCeEEEcCCC-CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCC
Q psy2392 1093 -GRFPIRVELDSL-SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 1156 (1165)
Q Consensus 1093 -gR~~i~v~l~~l-~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~ 1156 (1165)
|||.--|++.+- +.+.-.+||+ ++.+.+ --.++|+ +..||+.|-..=|||
T Consensus 831 PGRFDKLvyvG~~~d~esk~~vL~----AlTrkF---kLdedVd-------L~eiAk~cp~~~TGA 882 (953)
T KOG0736|consen 831 PGRFDKLVYVGPNEDAESKLRVLE----ALTRKF---KLDEDVD-------LVEIAKKCPPNMTGA 882 (953)
T ss_pred CCccceeEEecCCccHHHHHHHHH----HHHHHc---cCCCCcC-------HHHHHhhCCcCCchh
Confidence 899999999887 4455556666 443322 1133442 556777766554443
No 35
>KOG0735|consensus
Probab=99.93 E-value=1.1e-24 Score=255.71 Aligned_cols=177 Identities=25% Similarity=0.384 Sum_probs=142.0
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccC--CCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITG--PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~--~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gy 857 (1165)
|++|.|..++++.+.+.+.++-+...++. +++. +.++|||||||||||+||.++|..++..|+.+.++++.++ |
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~---~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K-y 741 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK-Y 741 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCccc---ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH-H
Confidence 47899999999999999987655444433 3333 5899999999999999999999999999999999999999 9
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
+|.++ ..+|++|.+|...
T Consensus 742 IGaSE-q~vR~lF~rA~~a------------------------------------------------------------- 759 (952)
T KOG0735|consen 742 IGASE-QNVRDLFERAQSA------------------------------------------------------------- 759 (952)
T ss_pred hcccH-HHHHHHHHHhhcc-------------------------------------------------------------
Confidence 99995 5699999887111
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.
T Consensus 760 -------------------------------------------------------------------------------~ 760 (952)
T KOG0735|consen 760 -------------------------------------------------------------------------------K 760 (952)
T ss_pred -------------------------------------------------------------------------------C
Confidence 5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~ 1095 (1165)
++|+|+||+|.|+..++..+. .+.. .|-+.||.-++|.... +-+..+|++ ++|.=+.|+|+ ||+
T Consensus 761 PCiLFFDEfdSiAPkRGhDsT-GVTD-RVVNQlLTelDG~Egl--------~GV~i~aaT----sRpdliDpALLRpGRl 826 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDST-GVTD-RVVNQLLTELDGAEGL--------DGVYILAAT----SRPDLIDPALLRPGRL 826 (952)
T ss_pred CeEEEeccccccCcccCCCCC-CchH-HHHHHHHHhhcccccc--------ceEEEEEec----CCccccCHhhcCCCcc
Confidence 789999999999998654322 2222 3677899999985543 344555554 58877889998 899
Q ss_pred CeEEEcCCCCHHHHHHHHhh
Q psy2392 1096 PIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~ 1115 (1165)
.--|.-+.+++.+..+||+-
T Consensus 827 D~~v~C~~P~~~eRl~il~~ 846 (952)
T KOG0735|consen 827 DKLVYCPLPDEPERLEILQV 846 (952)
T ss_pred ceeeeCCCCCcHHHHHHHHH
Confidence 99999999999999999983
No 36
>KOG0730|consensus
Probab=99.92 E-value=1.3e-24 Score=256.21 Aligned_cols=328 Identities=19% Similarity=0.261 Sum_probs=237.3
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh-hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV-RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRND 105 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R-R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~~ 105 (1165)
+++.+.||+||..-.=- |+||.| | |. .=+.|.-|+..+...||+-+-++++-.....|.++...++.|.-
T Consensus 317 ~~~~vivl~atnrp~sl-----d~alRRgR--fd-~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvG- 387 (693)
T KOG0730|consen 317 PDAKVIVLAATNRPDSL-----DPALRRGR--FD-REVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVG- 387 (693)
T ss_pred CcCcEEEEEecCCcccc-----ChhhhcCC--Cc-ceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhH-
Confidence 68999999999865544 999998 8 99 55569999999999999999999886533788888888888876
Q ss_pred CCchhHHHHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHhcccE
Q psy2392 106 RTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYV 185 (1165)
Q Consensus 106 r~lPDkalld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L~~~I 185 (1165)
-|.+.+--.++..+... ..++... |. .++-+..+. ....+....=+++|
T Consensus 388 ---aDL~~l~~ea~~~~~r~--------~~~~~~~------------A~-----~~i~psa~R---e~~ve~p~v~W~dI 436 (693)
T KOG0730|consen 388 ---ADLAALCREASLQATRR--------TLEIFQE------------AL-----MGIRPSALR---EILVEMPNVSWDDI 436 (693)
T ss_pred ---HHHHHHHHHHHHHHhhh--------hHHHHHH------------HH-----hcCCchhhh---heeccCCCCChhhc
Confidence 45543322222222210 0000010 00 011111110 11122233336789
Q ss_pred ecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchh
Q psy2392 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVD 265 (1165)
Q Consensus 186 iGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~ 265 (1165)
.|++++|+.+.+++.++.+++..+.+.+. .+|+++|||||||||||++||++|++.+.+|+.+.+.++.++ |+|++ +
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk-~vGeS-E 513 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK-YVGES-E 513 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH-hcCch-H
Confidence 99999999999999988877766555442 246999999999999999999999999999999999999998 99999 6
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEE
Q psy2392 266 TIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEI 345 (1165)
Q Consensus 266 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~ 345 (1165)
..++++|+++
T Consensus 514 r~ir~iF~kA---------------------------------------------------------------------- 523 (693)
T KOG0730|consen 514 RAIREVFRKA---------------------------------------------------------------------- 523 (693)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 7799999883
Q ss_pred EecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEE
Q psy2392 346 ELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFL 425 (1165)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Iifi 425 (1165)
.+. .++|||+
T Consensus 524 --------------------------------------------------------------------R~~--aP~IiFf 533 (693)
T KOG0730|consen 524 --------------------------------------------------------------------RQV--APCIIFF 533 (693)
T ss_pred --------------------------------------------------------------------hhc--CCeEEeh
Confidence 111 3699999
Q ss_pred ecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCeeEec
Q psy2392 426 DEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVEL 503 (1165)
Q Consensus 426 DEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~v~~ 503 (1165)
||||.++.++.++++ ++ .+.|-..||.-|+|-. ...|+++||++ ++|..++|+|+ |||+..+.+
T Consensus 534 DEiDsi~~~R~g~~~-~v-~~RVlsqLLtEmDG~e--------~~k~V~ViAAT----NRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSS-GV-TDRVLSQLLTEMDGLE--------ALKNVLVIAAT----NRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred hhHHhHhhccCCCcc-ch-HHHHHHHHHHHccccc--------ccCcEEEEecc----CChhhcCHHHcCCcccceeEee
Confidence 999999999875333 33 3458889999999843 44689999994 78999999999 599999999
Q ss_pred CCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHH-HHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 504 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 504 ~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~-a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
++++.+...+||+ ++ ++++ .++++ .++.||+.... -.|| -|..+....
T Consensus 600 plPD~~aR~~Ilk--------~~-----~kkm--p~~~~vdl~~La~~T~g------~SGA-el~~lCq~A 648 (693)
T KOG0730|consen 600 PLPDLEARLEILK--------QC-----AKKM--PFSEDVDLEELAQATEG------YSGA-EIVAVCQEA 648 (693)
T ss_pred cCccHHHHHHHHH--------HH-----HhcC--CCCccccHHHHHHHhcc------CChH-HHHHHHHHH
Confidence 9999999999995 11 1222 45555 57788886643 2344 455555443
No 37
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.8e-25 Score=242.13 Aligned_cols=240 Identities=23% Similarity=0.380 Sum_probs=184.7
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.++.++.|++++..+++++.++...+.. +|+++|||||||||||.|||++|+..+..|+++.+|+++++ |+|+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE 228 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE 228 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH-Hhcc
Confidence 589999999999999999999999888877654 57999999999999999999999999999999999999997 9999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..+++++|+.|
T Consensus 229 G-aRlVRelF~lA------------------------------------------------------------------- 240 (406)
T COG1222 229 G-ARLVRELFELA------------------------------------------------------------------- 240 (406)
T ss_pred c-hHHHHHHHHHH-------------------------------------------------------------------
Confidence 9 78899999773
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
..+ .++|
T Consensus 241 -----------------------------------------------------------------------rek--aPsI 247 (406)
T COG1222 241 -----------------------------------------------------------------------REK--APSI 247 (406)
T ss_pred -----------------------------------------------------------------------hhc--CCeE
Confidence 111 4899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCC
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 497 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~ 497 (1165)
|||||||.|..++.+.++ ...+ -|||.+|.++ ||- =...||=+|+|+ ++|..|+|+|+ |||
T Consensus 248 IFiDEIDAIg~kR~d~~t-~gDr-EVQRTmleLL~qlDGF--------D~~~nvKVI~AT----NR~D~LDPALLRPGR~ 313 (406)
T COG1222 248 IFIDEIDAIGAKRFDSGT-SGDR-EVQRTMLELLNQLDGF--------DPRGNVKVIMAT----NRPDILDPALLRPGRF 313 (406)
T ss_pred EEEechhhhhcccccCCC-CchH-HHHHHHHHHHHhccCC--------CCCCCeEEEEec----CCccccChhhcCCCcc
Confidence 999999999999877332 2223 4999887776 552 235688899984 78999999999 899
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHH-HHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~-a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
+..|+|+.++.+...+||+- .+..++ ++++ -++.||+.+.. -.|| -|+.++ .|.
T Consensus 314 DRkIEfplPd~~gR~~Il~I-------------HtrkM~--l~~dvd~e~la~~~~g------~sGA-dlkaic---tEA 368 (406)
T COG1222 314 DRKIEFPLPDEEGRAEILKI-------------HTRKMN--LADDVDLELLARLTEG------FSGA-DLKAIC---TEA 368 (406)
T ss_pred cceeecCCCCHHHHHHHHHH-------------Hhhhcc--CccCcCHHHHHHhcCC------CchH-HHHHHH---HHH
Confidence 99999999999999999951 122222 2222 36778877754 3566 355543 344
Q ss_pred hhcccCCCeeEEcccccccccccCcccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDLSINE 604 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 604 (1165)
-+|-.-+....||.++..+.+.+.+.+.
T Consensus 369 Gm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 369 GMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred hHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 5555545556788777777666665533
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.5e-24 Score=242.44 Aligned_cols=147 Identities=26% Similarity=0.347 Sum_probs=110.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC-CchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD-LIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~-l~pel~~R~ 497 (1165)
...|+||||||++++.+|+ .|||.+|.++ |+||+++ +.+||. ++|+|+||+
T Consensus 104 r~tiLflDEIHRfnK~QQD-------------~lLp~vE~G~------------iilIGAT---TENPsF~ln~ALlSR~ 155 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQD-------------ALLPHVENGT------------IILIGAT---TENPSFELNPALLSRA 155 (436)
T ss_pred CceEEEEehhhhcChhhhh-------------hhhhhhcCCe------------EEEEecc---CCCCCeeecHHHhhhh
Confidence 4679999999999998665 9999999865 4567763 578876 899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
.+. +|+||+.+|+.++|+ +.+..... ...+..+.+++++++.|+..+ +++||++.+.+|.+..-.
T Consensus 156 ~vf-~lk~L~~~di~~~l~---ra~~~~~r---gl~~~~~~i~~~a~~~l~~~s--------~GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 156 RVF-ELKPLSSEDIKKLLK---RALLDEER---GLGGQIIVLDEEALDYLVRLS--------NGDARRALNLLELAALSA 220 (436)
T ss_pred hee-eeecCCHHHHHHHHH---HHHhhhhc---CCCcccccCCHHHHHHHHHhc--------CchHHHHHHHHHHHHHhc
Confidence 986 899999999999995 22322211 112334668999999999988 789999999999887542
Q ss_pred hcccCCCeeEEcccccccccccCccccc---------cccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDLSINED---------LSRYDSGM 613 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~~~~~d---------ls~~i~~~ 613 (1165)
. ... .++.+.+++.++.....+| +|+|++|+
T Consensus 221 ~----~~~-~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 221 E----PDE-VLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred C----CCc-ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 1 111 3446777777766544333 78898877
No 39
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-22 Score=245.11 Aligned_cols=175 Identities=30% Similarity=0.473 Sum_probs=141.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccC--CCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITG--PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~--~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
.++.|.+.++..+.+.+...+++..+.. ..++ +.++||+||||||||++|+++|+.++.+|+.+++++++++ |+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~---~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk-~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP---PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK-WV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC---CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc-cc
Confidence 6788899999999999987766655433 2222 5799999999999999999999999999999999999998 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|+. +..++++|..|...
T Consensus 318 Ges-ek~ir~~F~~A~~~-------------------------------------------------------------- 334 (494)
T COG0464 318 GES-EKNIRELFEKARKL-------------------------------------------------------------- 334 (494)
T ss_pred chH-HHHHHHHHHHHHcC--------------------------------------------------------------
Confidence 998 56789988777211
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
++
T Consensus 335 ------------------------------------------------------------------------------~p 336 (494)
T COG0464 335 ------------------------------------------------------------------------------AP 336 (494)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 57
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
+||||||||+++.....++ +.+..-+...||..++| .-..++++.|++. +.|+.+.|++++ ||.
T Consensus 337 ~iiFiDEiDs~~~~r~~~~--~~~~~r~~~~lL~~~d~--------~e~~~~v~vi~aT----N~p~~ld~a~lR~gRfd 402 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSE--DGSGRRVVGQLLTELDG--------IEKAEGVLVIAAT----NRPDDLDPALLRPGRFD 402 (494)
T ss_pred cEEEEEchhhhhccCCCCC--chHHHHHHHHHHHHhcC--------CCccCceEEEecC----CCccccCHhhcccCccc
Confidence 8999999999999865422 11223477778888875 2344567777775 589999999998 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
.++.+++++.++..+|++
T Consensus 403 ~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 403 RLIYVPLPDLEERLEIFK 420 (494)
T ss_pred eEeecCCCCHHHHHHHHH
Confidence 999999999999999998
No 40
>KOG0733|consensus
Probab=99.90 E-value=4.7e-23 Score=239.28 Aligned_cols=321 Identities=18% Similarity=0.251 Sum_probs=217.6
Q ss_pred CCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCCc
Q psy2392 29 GNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTL 108 (1165)
Q Consensus 29 Gel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~~r~l 108 (1165)
..+.|||||+.=.-- ||||.|--.|. .=+++.-||...--.||+-+..++--.-.--+..+++|..-|+-
T Consensus 328 ~~VlVIgATnRPDsl-----DpaLRRaGRFd-rEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVG---- 397 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSL-----DPALRRAGRFD-REICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVG---- 397 (802)
T ss_pred CCeEEEecCCCCccc-----CHHHhcccccc-ceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccc----
Confidence 348899999976544 99999844499 56679999999999999999886542112334455555555555
Q ss_pred hhH-HHHHhhhhhhhhhhcc--CCCCccCc--cc----cccc----cc--cc----chhhHHHHHHhhhccccCchhhhh
Q psy2392 109 RRL-EAMLLTANRETTLIIT--GNGDVLEP--EN----GIGA----IG--SG----GIFAQSAAKALQENTELMPDEIIK 169 (1165)
Q Consensus 109 PDk-alld~a~a~~~~~~~~--~~~~~~~~--e~----~~~~----~~--~~----~~~~~~va~~l~~~t~l~~~~i~~ 169 (1165)
-|+ |+.-+|+-.+...+++ .++....+ ++ ..+. +. +. ......+++.+..|..-...+...
T Consensus 398 ADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~ 477 (802)
T KOG0733|consen 398 ADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLE 477 (802)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhc
Confidence 343 3333332222222221 11000000 00 0000 10 00 011112333333332211111111
Q ss_pred h-hhHH-------------------HHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCC
Q psy2392 170 K-SLVI-------------------AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 229 (1165)
Q Consensus 170 ~-~~~~-------------------~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~ 229 (1165)
. ...+ ..+...-+++|.|++++...+..+|..+++++.+....+.. .|.++||||||||
T Consensus 478 ~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGC 556 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGC 556 (802)
T ss_pred cceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCc
Confidence 0 0111 12223346789999999999999999999888777665544 4789999999999
Q ss_pred CchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcC
Q psy2392 230 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEK 309 (1165)
Q Consensus 230 GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 309 (1165)
|||.|||++|++.+.+|+.+-..++.+. |||++ +..++.+|..+
T Consensus 557 GKTLlAKAVANEag~NFisVKGPELlNk-YVGES-ErAVR~vFqRA---------------------------------- 600 (802)
T KOG0733|consen 557 GKTLLAKAVANEAGANFISVKGPELLNK-YVGES-ERAVRQVFQRA---------------------------------- 600 (802)
T ss_pred cHHHHHHHHhhhccCceEeecCHHHHHH-HhhhH-HHHHHHHHHHh----------------------------------
Confidence 9999999999999999999999999997 99999 66788888773
Q ss_pred CCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHH
Q psy2392 310 SNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIR 389 (1165)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1165)
T Consensus 601 -------------------------------------------------------------------------------- 600 (802)
T KOG0733|consen 601 -------------------------------------------------------------------------------- 600 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeec
Q psy2392 390 EAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK 469 (1165)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~ 469 (1165)
.. ..+||||+||||.+++++.... ..++..|.+.||.-|||.. .
T Consensus 601 ------------------------R~--saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~--------~ 644 (802)
T KOG0733|consen 601 ------------------------RA--SAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLE--------E 644 (802)
T ss_pred ------------------------hc--CCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccc--------c
Confidence 11 2489999999999999987733 3345568899999999843 4
Q ss_pred CceEEEEEeCCcccCCCCCCchhhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 470 TDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 470 t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+++|+++ ++|.-++|+++ |||+-......++.+|...||+
T Consensus 645 R~gV~viaAT----NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 645 RRGVYVIAAT----NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred ccceEEEeec----CCCcccchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 5678888884 78999999998 8999999999999999999995
No 41
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.3e-24 Score=234.40 Aligned_cols=180 Identities=26% Similarity=0.464 Sum_probs=150.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|.|.++.+++|.+++..+++...++...... +|+++|||||||||||.|||++|+..++.|+++.+|+++++ |+|+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE 228 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE 228 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH-Hhcc
Confidence 689999999999999999887776666544332 37999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..+++++|+.|+.+
T Consensus 229 G-aRlVRelF~lArek---------------------------------------------------------------- 243 (406)
T COG1222 229 G-ARLVRELFELAREK---------------------------------------------------------------- 243 (406)
T ss_pred c-hHHHHHHHHHHhhc----------------------------------------------------------------
Confidence 9 57899999888333
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 244 ----------------------------------------------------------------------------aPsI 247 (406)
T COG1222 244 ----------------------------------------------------------------------------APSI 247 (406)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 4679
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||||.|++.+.. +++...+| |||.||.++-. --|--..+||=+|+|+ ++|.-|.|+|+ |||.-.
T Consensus 248 IFiDEIDAIg~kR~d-~~t~gDrE-VQRTmleLL~q-----lDGFD~~~nvKVI~AT----NR~D~LDPALLRPGR~DRk 316 (406)
T COG1222 248 IFIDEIDAIGAKRFD-SGTSGDRE-VQRTMLELLNQ-----LDGFDPRGNVKVIMAT----NRPDILDPALLRPGRFDRK 316 (406)
T ss_pred EEEechhhhhccccc-CCCCchHH-HHHHHHHHHHh-----ccCCCCCCCeEEEEec----CCccccChhhcCCCcccce
Confidence 999999999998654 23333455 99988877521 0133345788889986 58999999999 899999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
|+|+.++.+...+||+
T Consensus 317 IEfplPd~~gR~~Il~ 332 (406)
T COG1222 317 IEFPLPDEEGRAEILK 332 (406)
T ss_pred eecCCCCHHHHHHHHH
Confidence 9999999999999998
No 42
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.87 E-value=5.9e-21 Score=241.92 Aligned_cols=292 Identities=23% Similarity=0.321 Sum_probs=203.2
Q ss_pred hhhccccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHH
Q psy2392 156 LQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 156 l~~~t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
|..++++||.....+..++..+.+.|+++++||+++++.+.+.+.....+ . .....++||+||||||||++|
T Consensus 293 l~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~----~----~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 293 LDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR----G----KMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred HHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh----c----CCCCceEEEECCCCCCHHHHH
Confidence 44457899998887788899999999999999999999999877643111 1 112358999999999999999
Q ss_pred HHHHHHhCCCceEEeccccccc--------cccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 236 RRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 236 k~lA~~l~~~~i~ld~s~~~~~--------GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
+++|+.++.+|++++++.+... +|+|...+.. ...+.
T Consensus 365 k~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i-~~~l~---------------------------------- 409 (775)
T TIGR00763 365 KSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRI-IQGLK---------------------------------- 409 (775)
T ss_pred HHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchH-HHHHH----------------------------------
Confidence 9999999999999988654221 1222221110 00000
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 410 -------------------------------------------------------------------------------- 409 (775)
T TIGR00763 410 -------------------------------------------------------------------------------- 409 (775)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccC---ceeeee
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG---TTVNTK 464 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg---~~v~~~ 464 (1165)
.| ...+.|||||||||+++..++ + ..+.||.++|. ......
T Consensus 410 ------------------------~~---~~~~~villDEidk~~~~~~~----~-----~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 410 ------------------------KA---KTKNPLFLLDEIDKIGSSFRG----D-----PASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred ------------------------Hh---CcCCCEEEEechhhcCCccCC----C-----HHHHHHHhcCHHhcCccccc
Confidence 00 113469999999999965322 2 23478888884 223323
Q ss_pred c--eeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCC---eeEe
Q psy2392 465 Y--GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI---KIEF 539 (1165)
Q Consensus 465 ~--~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i---~l~~ 539 (1165)
| ..++.++++||+|+ +.+..+.|+|++||. +|+|++|+.++..+|++ ..+..++ ++..|+ .+.+
T Consensus 454 ~~~~~~d~s~v~~I~Tt----N~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~---~~l~~~~---~~~~~l~~~~~~~ 522 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATA----NSIDTIPRPLLDRME-VIELSGYTEEEKLEIAK---KYLIPKA---LEDHGLKPDELKI 522 (775)
T ss_pred cCCceeccCCEEEEEec----CCchhCCHHHhCCee-EEecCCCCHHHHHHHHH---HHHHHHH---HHHcCCCcceEEE
Confidence 2 25677899999885 456789999999997 47999999999999996 4444333 333444 6899
Q ss_pred CHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCC-C--------eeEEcccccccccccCcccccccccc
Q psy2392 540 VDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN-I--------SLLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 540 ~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~-~--------~~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+++++..|++ +|. ...|+|.|++.+++++...++.... . .+.|+.+.+.+.++..-...+ +.
T Consensus 523 ~~~~l~~i~~-~~~-----~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~~~~~~--~~- 593 (775)
T TIGR00763 523 TDEALLLLIK-YYT-----REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKPVFTYE--RA- 593 (775)
T ss_pred CHHHHHHHHH-hcC-----hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCccccccc--hh-
Confidence 9999999998 454 4799999999999999888776442 1 168888888888875443333 11
Q ss_pred cccccccCcceeeeecCC
Q psy2392 611 SGMEKFQGTTILSVRRGN 628 (1165)
Q Consensus 611 ~~~~~~~gt~~~aLaRG~ 628 (1165)
......+-+.+||-..
T Consensus 594 --~~~~~~G~v~gla~~~ 609 (775)
T TIGR00763 594 --YEVTPPGVVMGLAWTP 609 (775)
T ss_pred --ccCCCCeEEEEEEEeC
Confidence 1122344555666543
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.86 E-value=8.4e-22 Score=222.17 Aligned_cols=107 Identities=29% Similarity=0.365 Sum_probs=82.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||||++.+. .|+.|||.||.+++.. ...+|+|+.| .+.|+|++|+.|
T Consensus 105 ~tiLflDEIHRfnK~-------------QQD~lLp~vE~G~iil--IGATTENPsF------------~ln~ALlSR~~v 157 (436)
T COG2256 105 RTILFLDEIHRFNKA-------------QQDALLPHVENGTIIL--IGATTENPSF------------ELNPALLSRARV 157 (436)
T ss_pred ceEEEEehhhhcChh-------------hhhhhhhhhcCCeEEE--EeccCCCCCe------------eecHHHhhhhhe
Confidence 469999999999987 8999999999887665 6667777666 799999999999
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
. +|+||+.+|+.++|+ +++..... -| .+..+.++++|++.|+..+-..-|.+.|
T Consensus 158 f-~lk~L~~~di~~~l~---ra~~~~~r-gl--~~~~~~i~~~a~~~l~~~s~GD~R~aLN 211 (436)
T COG2256 158 F-ELKPLSSEDIKKLLK---RALLDEER-GL--GGQIIVLDEEALDYLVRLSNGDARRALN 211 (436)
T ss_pred e-eeecCCHHHHHHHHH---HHHhhhhc-CC--CcccccCCHHHHHHHHHhcCchHHHHHH
Confidence 6 799999999999999 22222211 11 2234568999999999987655444444
No 44
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.86 E-value=1.5e-20 Score=236.47 Aligned_cols=276 Identities=19% Similarity=0.266 Sum_probs=197.9
Q ss_pred cccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHH
Q psy2392 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 160 t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
..+||.....+..++.+..+.|+++++|++.+|+.|.+.+....+ . .. .....++|+||||||||++++.+|
T Consensus 299 ~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~---~-~~----~~g~~i~l~GppG~GKTtl~~~ia 370 (784)
T PRK10787 299 VQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR---V-NK----IKGPILCLVGPPGVGKTSLGQSIA 370 (784)
T ss_pred HhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh---c-cc----CCCceEEEECCCCCCHHHHHHHHH
Confidence 468998888888999999999999999999999999987764211 1 11 123579999999999999999999
Q ss_pred HHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCc
Q psy2392 240 KLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE 319 (1165)
Q Consensus 240 ~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 319 (1165)
+.++.+|++++++...+. .++.+. .+.
T Consensus 371 ~~l~~~~~~i~~~~~~d~-----------~~i~g~--------------------------------~~~---------- 397 (784)
T PRK10787 371 KATGRKYVRMALGGVRDE-----------AEIRGH--------------------------------RRT---------- 397 (784)
T ss_pred HHhCCCEEEEEcCCCCCH-----------HHhccc--------------------------------hhc----------
Confidence 999999999997764321 111110 000
Q ss_pred CcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHH
Q psy2392 320 NNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 399 (1165)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1165)
+ .++.+| .+.+
T Consensus 398 ----------------------------------~-~g~~~G------~~~~---------------------------- 408 (784)
T PRK10787 398 ----------------------------------Y-IGSMPG------KLIQ---------------------------- 408 (784)
T ss_pred ----------------------------------c-CCCCCc------HHHH----------------------------
Confidence 0 000011 0000
Q ss_pred HHhhcChhHHHHHHHhhh-ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCc---eeeeece--eecCceE
Q psy2392 400 ANKLLNEDEIQQKAINNV-EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT---TVNTKYG--IIKTDHI 473 (1165)
Q Consensus 400 ~~~~~~~~~~~~~a~~~~-~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~---~v~~~~~--~~~t~~i 473 (1165)
++..+ ..+.|+|||||||+.+..++ ..+..||+++|.. .+...|. ..+.+++
T Consensus 409 -------------~l~~~~~~~~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 409 -------------KMAKVGVKNPLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred -------------HHHhcCCCCCEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 00111 13569999999999876332 1456899999853 3333443 5688999
Q ss_pred EEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 474 LFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 474 lfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
+||||.+ ...+.|+|++||.+ |.|.+|+.+++.+|++ ..+..++.+.....+..+.++++++++|++ +|.
T Consensus 467 ~~i~TaN-----~~~i~~aLl~R~~i-i~~~~~t~eek~~Ia~---~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt 536 (784)
T PRK10787 467 MFVATSN-----SMNIPAPLLDRMEV-IRLSGYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIR-YYT 536 (784)
T ss_pred EEEEcCC-----CCCCCHHHhcceee-eecCCCCHHHHHHHHH---HhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCC
Confidence 9999754 34699999999975 6999999999999996 555533333345666789999999999997 665
Q ss_pred ccccCCccCcchhHHHHHHHHHHhhcccCC----CeeEEcccccccccccCcc
Q psy2392 554 INERTENIGARRLYTAMEKLLEEVSFNSNN----ISLLVDADYVNSRLGDLSI 602 (1165)
Q Consensus 554 ~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~----~~~~i~~~~v~~~~~~~~~ 602 (1165)
..+|||.|++.|++++.......-. ..+.|+.+.+.+.++...-
T Consensus 537 -----~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 537 -----REAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred -----cccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 5899999999999998877654321 2288999999999986543
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-20 Score=222.68 Aligned_cols=273 Identities=20% Similarity=0.252 Sum_probs=207.2
Q ss_pred cccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHH
Q psy2392 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 160 t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
..+||..-..+..++.+..+.|+++..|.+++|+.|.+.+...-+. ... +..-+||+||||||||+|++.+|
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~----~~~----kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT----KKL----KGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh----ccC----CCcEEEEECCCCCCchhHHHHHH
Confidence 4689999988999999999999999999999999999988754222 111 22589999999999999999999
Q ss_pred HHhCCCceEEecccccc--------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCC
Q psy2392 240 KLSNAPFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSN 311 (1165)
Q Consensus 240 ~~l~~~~i~ld~s~~~~--------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 311 (1165)
+.++..|+++.-.-..+ ..|+|.-.+.+++.+...
T Consensus 372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka------------------------------------- 414 (782)
T COG0466 372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA------------------------------------- 414 (782)
T ss_pred HHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh-------------------------------------
Confidence 99999999998765443 134444433322222211
Q ss_pred CccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHH
Q psy2392 312 LDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREA 391 (1165)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1165)
T Consensus 415 -------------------------------------------------------------------------------- 414 (782)
T COG0466 415 -------------------------------------------------------------------------------- 414 (782)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccC---ceeeeece--
Q psy2392 392 IKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG---TTVNTKYG-- 466 (1165)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg---~~v~~~~~-- 466 (1165)
-..+.+++||||||+..+..+ |.++ +||.++|- ..++..|-
T Consensus 415 -------------------------~~~NPv~LLDEIDKm~ss~rG----DPaS-----ALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 415 -------------------------GVKNPVFLLDEIDKMGSSFRG----DPAS-----ALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred -------------------------CCcCCeEEeechhhccCCCCC----ChHH-----HHHhhcCHhhcCchhhccccC
Confidence 114679999999999877433 4443 79999984 34444554
Q ss_pred eecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHH
Q psy2392 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 546 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~ 546 (1165)
..+-++++||||.+ ....+.+.|+-||.+ +++..+++++-.+|.+ +.|+.++.+......-++.|+|+|+..
T Consensus 461 ~yDLS~VmFiaTAN----sl~tIP~PLlDRMEi-I~lsgYt~~EKl~IAk---~~LiPk~~~~~gL~~~el~i~d~ai~~ 532 (782)
T COG0466 461 PYDLSKVMFIATAN----SLDTIPAPLLDRMEV-IRLSGYTEDEKLEIAK---RHLIPKQLKEHGLKKGELTITDEAIKD 532 (782)
T ss_pred ccchhheEEEeecC----ccccCChHHhcceee-eeecCCChHHHHHHHH---HhcchHHHHHcCCCccceeecHHHHHH
Confidence 55778999999953 344577789999987 4999999999999997 677776655555555679999999999
Q ss_pred HHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEcccccccccccCccccc
Q psy2392 547 LAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYVNSRLGDLSINED 605 (1165)
Q Consensus 547 la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~v~~~~~~~~~~~d 605 (1165)
|++.... ..|.|.|.+.|.+++.....+.-... +.||...+.+.|+......+
T Consensus 533 iI~~YTR------EAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~ 589 (782)
T COG0466 533 IIRYYTR------EAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYG 589 (782)
T ss_pred HHHHHhH------hhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCcc
Confidence 9998766 79999999999998887766544332 58898889998887654444
No 46
>KOG0741|consensus
Probab=99.85 E-value=1.5e-20 Score=215.35 Aligned_cols=152 Identities=29% Similarity=0.412 Sum_probs=117.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC-CCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN-APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~-~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1165)
.+++|||||||||||.+||.|.+.|+ .+--.++..++.++ |||+++ ..+|+||..|...+
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~K-YVGeSE-~NvR~LFaDAEeE~----------------- 316 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK-YVGESE-ENVRKLFADAEEEQ----------------- 316 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHH-hhcccH-HHHHHHHHhHHHHH-----------------
Confidence 37999999999999999999999996 45577899999887 999994 55999998741111
Q ss_pred HHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhc
Q psy2392 297 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376 (1165)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1165)
.+-|. ++
T Consensus 317 ------------------------------------r~~g~---------------------~S---------------- 323 (744)
T KOG0741|consen 317 ------------------------------------RRLGA---------------------NS---------------- 323 (744)
T ss_pred ------------------------------------HhhCc---------------------cC----------------
Confidence 11110 01
Q ss_pred CCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc
Q psy2392 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 456 (1165)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~ 456 (1165)
.--||++||||.||+++.+..+...-++.|.++||.-|
T Consensus 324 ------------------------------------------gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKm 361 (744)
T KOG0741|consen 324 ------------------------------------------GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKM 361 (744)
T ss_pred ------------------------------------------CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhc
Confidence 12499999999999998875555555678999999999
Q ss_pred cCceeeeeceeecCceEEEEEeCCcccCCCCCCc-hhhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 457 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 457 Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~-pel~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|| +-.-+|||+|+.+ +..|++ .+|+ |||.+.+++.-+++.-..|||+
T Consensus 362 DG--------VeqLNNILVIGMT-----NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~ 411 (744)
T KOG0741|consen 362 DG--------VEQLNNILVIGMT-----NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILK 411 (744)
T ss_pred cc--------HHhhhcEEEEecc-----CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEE
Confidence 97 2356799999874 344554 4555 8999999999999999888884
No 47
>KOG2028|consensus
Probab=99.85 E-value=4.6e-21 Score=211.50 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=116.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC-CchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD-LIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~-l~pel~~R~ 497 (1165)
...|+||||||++++.+++ .|||.+|.+. |++|+++ +.+||. ++.+|++|+
T Consensus 222 rkTilFiDEiHRFNksQQD-------------~fLP~VE~G~------------I~lIGAT---TENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD-------------TFLPHVENGD------------ITLIGAT---TENPSFQLNAALLSRC 273 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh-------------cccceeccCc------------eEEEecc---cCCCccchhHHHHhcc
Confidence 4789999999999998665 8999999765 4577764 477876 899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+++ .|++|+.+.+..||......|.+-.+.--...+-.+.+++.++++|+..+ .++||+..+.+|..+...
T Consensus 274 ~Vf-vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls--------dGDaR~aLN~Lems~~m~ 344 (554)
T KOG2028|consen 274 RVF-VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS--------DGDARAALNALEMSLSMF 344 (554)
T ss_pred cee-EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc--------CchHHHHHHHHHHHHHHH
Confidence 997 69999999999999643333322111000112223467899999999877 689999999999886533
Q ss_pred hcccCCCe-eEEcccccccccccCccccc---------cccccccc
Q psy2392 578 SFNSNNIS-LLVDADYVNSRLGDLSINED---------LSRYDSGM 613 (1165)
Q Consensus 578 ~~~~~~~~-~~i~~~~v~~~~~~~~~~~d---------ls~~i~~~ 613 (1165)
....-... +.++.+.|++.++....-+| +|+|.++|
T Consensus 345 ~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSm 390 (554)
T KOG2028|consen 345 CTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSM 390 (554)
T ss_pred HhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhh
Confidence 33222112 78999999999988766666 77888877
No 48
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=3.6e-20 Score=234.20 Aligned_cols=316 Identities=20% Similarity=0.269 Sum_probs=202.7
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh--hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV--RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRN 104 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R--R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~ 104 (1165)
.++.+.+||||+.-+.- |+|+.| | |. ..+.++.|+.++-..||+.....+.-.....+..+++.++.|..
T Consensus 311 ~~~~vivI~atn~~~~l-----d~al~r~gR--fd-~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 311 GRGRVIVIGATNRPDAL-----DPALRRPGR--FD-REIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred cCCCEEEEeecCChhhc-----CHHHhCchh--cc-EEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 46889999999876543 899998 7 98 67779999999999999954433321112446667777766654
Q ss_pred CCCchhH-HHHHhhhhhhhhhhccCCCCccCccccccc-ccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHhc
Q psy2392 105 DRTLRRL-EAMLLTANRETTLIITGNGDVLEPENGIGA-IGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELD 182 (1165)
Q Consensus 105 ~r~lPDk-alld~a~a~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L~ 182 (1165)
-|. ++..+++.......+.........+..... +....+.......++... .+..+.+ ...+....-.
T Consensus 383 ----adl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v---~ps~~~~---~~~~~~~~~~ 452 (733)
T TIGR01243 383 ----ADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMV---EPSAIRE---VLVEVPNVRW 452 (733)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhc---cccccch---hhccccccch
Confidence 243 223333322222111100000000000000 000000000111111111 1111000 0011112224
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+..+.++..+....+.. .|.++||+||||||||++|+++|.+++.+|+.++++++.++ |+|+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~-~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~-~vGe 530 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR-PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WVGE 530 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc-ccCc
Confidence 589999999999999998766665554433221 35789999999999999999999999999999999998875 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 531 s-e~~i~~~f~~A------------------------------------------------------------------- 542 (733)
T TIGR01243 531 S-EKAIREIFRKA------------------------------------------------------------------- 542 (733)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 45577777652
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 543 -----------------------------------------------------------------------~~--~~p~i 549 (733)
T TIGR01243 543 -----------------------------------------------------------------------RQ--AAPAI 549 (733)
T ss_pred -----------------------------------------------------------------------Hh--cCCEE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||.+++.+....... ..+.+.+.||..++|- ...+++++|+++ +.|+.+.|+++ |||+..
T Consensus 550 ifiDEid~l~~~r~~~~~~~-~~~~~~~~lL~~ldg~--------~~~~~v~vI~aT----n~~~~ld~allRpgRfd~~ 616 (733)
T TIGR01243 550 IFFDEIDAIAPARGARFDTS-VTDRIVNQLLTEMDGI--------QELSNVVVIAAT----NRPDILDPALLRPGRFDRL 616 (733)
T ss_pred EEEEChhhhhccCCCCCCcc-HHHHHHHHHHHHhhcc--------cCCCCEEEEEeC----CChhhCCHhhcCCCccceE
Confidence 99999999998765422222 2344667889888873 235678899885 67999999998 699999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
+.++.++.++..+|++
T Consensus 617 i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 617 ILVPPPDEEARKEIFK 632 (733)
T ss_pred EEeCCcCHHHHHHHHH
Confidence 9999999999999984
No 49
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.84 E-value=5.9e-22 Score=207.18 Aligned_cols=80 Identities=38% Similarity=0.678 Sum_probs=69.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccCCCCC---------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKPSD--------- 488 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~~p~~--------- 488 (1165)
+.+|||||||||++++ .+.+.|+|+++||+.||+++|++.++..+| .++++|++||+||+|.......
T Consensus 68 ~~gVVllDEidKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~ 145 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIE 145 (171)
T ss_dssp HHTEEEEETGGGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCH
T ss_pred chhhhhhHHHhhcccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccH
Confidence 5679999999999998 445789999999999999999999998887 9999999999999998543322
Q ss_pred --------------CchhhhCCCCee
Q psy2392 489 --------------LIPELQGRFPIR 500 (1165)
Q Consensus 489 --------------l~pel~~R~~~~ 500 (1165)
|.|||+||||++
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 999999999974
No 50
>KOG0738|consensus
Probab=99.84 E-value=6.4e-21 Score=212.66 Aligned_cols=183 Identities=20% Similarity=0.353 Sum_probs=153.2
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-|++|.|..+||+.|.+++..++....++.+.+-+ .+++|++||||+|||+|||++|.+++..|+.++.+.++++ |.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrP--WkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK-wR 286 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRP--WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK-WR 286 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccc--cceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh-hc
Confidence 35899999999999999999887777777766543 5999999999999999999999999999999999999999 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|++ +.++|-||+.|+..
T Consensus 287 GeS-EKlvRlLFemARfy-------------------------------------------------------------- 303 (491)
T KOG0738|consen 287 GES-EKLVRLLFEMARFY-------------------------------------------------------------- 303 (491)
T ss_pred cch-HHHHHHHHHHHHHh--------------------------------------------------------------
Confidence 999 67899999887333
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.+
T Consensus 304 ------------------------------------------------------------------------------AP 305 (491)
T KOG0738|consen 304 ------------------------------------------------------------------------------AP 305 (491)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 46
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
.+|||||||.|++.+++.+..++|+. |..+||-.|+|..- ......++||.+.. +-|||+..+|++||.-|
T Consensus 306 StIFiDEIDslcs~RG~s~EHEaSRR-vKsELLvQmDG~~~-----t~e~~k~VmVLAAT---N~PWdiDEAlrRRlEKR 376 (491)
T KOG0738|consen 306 STIFIDEIDSLCSQRGGSSEHEASRR-VKSELLVQMDGVQG-----TLENSKVVMVLAAT---NFPWDIDEALRRRLEKR 376 (491)
T ss_pred ceeehhhHHHHHhcCCCccchhHHHH-HHHHHHHHhhcccc-----ccccceeEEEEecc---CCCcchHHHHHHHHhhh
Confidence 79999999999999887666777775 99999999998542 23335666666543 56999999999999999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
+.++-++.+....+++
T Consensus 377 IyIPLP~~~~R~~Li~ 392 (491)
T KOG0738|consen 377 IYIPLPDAEARSALIK 392 (491)
T ss_pred eeeeCCCHHHHHHHHH
Confidence 8887778777766666
No 51
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.84 E-value=9.4e-21 Score=201.70 Aligned_cols=173 Identities=27% Similarity=0.441 Sum_probs=137.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+||++||+.-+..+... + ++.....|.|+++||+||||||||++|++||++.+.||+.+.++++... |||.
T Consensus 121 ddViGqEeAK~kcrli~~yL-e----nPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe-hVGd 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYL-E----NPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE-HVGD 194 (368)
T ss_pred hhhhchHHHHHHHHHHHHHh-h----ChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH-Hhhh
Confidence 58999999997644433211 1 1123345678999999999999999999999999999999999999875 8888
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ...++++++.+
T Consensus 195 g-ar~Ihely~rA------------------------------------------------------------------- 206 (368)
T COG1223 195 G-ARRIHELYERA------------------------------------------------------------------- 206 (368)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 7 56677777663
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
... .+||
T Consensus 207 -----------------------------------------------------------------------~~~--aPci 213 (368)
T COG1223 207 -----------------------------------------------------------------------RKA--APCI 213 (368)
T ss_pred -----------------------------------------------------------------------Hhc--CCeE
Confidence 111 4899
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeE
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 501 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v 501 (1165)
|||||+|.|+-.+..++ .+|+|- +.++||+-|||.. ...-+++||++ ++|.-|+|+.++||...|
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi~--------eneGVvtIaaT----N~p~~LD~aiRsRFEeEI 279 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGIK--------ENEGVVTIAAT----NRPELLDPAIRSRFEEEI 279 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCcc--------cCCceEEEeec----CChhhcCHHHHhhhhhee
Confidence 99999999997765433 467764 7789999999843 33457789984 789999999999999999
Q ss_pred ecCCCCHHHHHHHHh
Q psy2392 502 ELDSLSISDFTRIMT 516 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~ 516 (1165)
+|.-++.++...||.
T Consensus 280 EF~LP~~eEr~~ile 294 (368)
T COG1223 280 EFKLPNDEERLEILE 294 (368)
T ss_pred eeeCCChHHHHHHHH
Confidence 999999999999995
No 52
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.84 E-value=7.8e-22 Score=206.30 Aligned_cols=80 Identities=38% Similarity=0.678 Sum_probs=70.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCCCCCC---------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKPSD--------- 1086 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~p~d--------- 1086 (1165)
+.||||+|||||+..+ ...+.|+|+++||+.||+++|++.++..+| .++|+|++|||+|+|.......
T Consensus 68 ~~gVVllDEidKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~ 145 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIE 145 (171)
T ss_dssp HHTEEEEETGGGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCH
T ss_pred chhhhhhHHHhhcccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccH
Confidence 5689999999999987 346789999999999999999999999888 9999999999999999644433
Q ss_pred --------------CchhhhccCCeE
Q psy2392 1087 --------------LIPELQGRFPIR 1098 (1165)
Q Consensus 1087 --------------l~pel~gR~~i~ 1098 (1165)
|.|||+||||++
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 899999999974
No 53
>KOG0736|consensus
Probab=99.84 E-value=3.7e-20 Score=220.08 Aligned_cols=315 Identities=18% Similarity=0.247 Sum_probs=196.5
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDR 106 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~~r 106 (1165)
.++...+||+|+. +++=|+.-++-.|. .+.++.||.++-++||+.+....+--...-++..+. |.++=
T Consensus 530 ~~~~~ivv~t~~s------~~~lp~~i~~~f~~--ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~----~t~gf 597 (953)
T KOG0736|consen 530 SCPPVIVVATTSS------IEDLPADIQSLFLH--EIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLAR----KTSGF 597 (953)
T ss_pred CCCceEEEEeccc------cccCCHHHHHhhhh--hccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH----hcCCC
Confidence 5678888998886 44456666553333 356999999999999998765444211123333333 23332
Q ss_pred CchhHH-HH----HhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHh
Q psy2392 107 TLRRLE-AM----LLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSEL 181 (1165)
Q Consensus 107 ~lPDka-ll----d~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L 181 (1165)
.+-|.. +. ..++.++...... ......-+..+..- .....++..++.+++...--. +..-.-.+...-
T Consensus 598 s~~~L~~l~~~~s~~~~~~i~~~~l~-g~~~~~~~~~~~~~-~~~l~~edf~kals~~~~~fs-----~aiGAPKIPnV~ 670 (953)
T KOG0736|consen 598 SFGDLEALVAHSSLAAKTRIKNKGLA-GGLQEEDEGELCAA-GFLLTEEDFDKALSRLQKEFS-----DAIGAPKIPNVS 670 (953)
T ss_pred CHHHHHHHhcCchHHHHHHHHhhccc-ccchhccccccccc-cceecHHHHHHHHHHHHHhhh-----hhcCCCCCCccc
Confidence 223331 11 1112222111000 00000000000000 011111222233221100000 000000122334
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccC-CCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITG-PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~-~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
+++|.|.+++|..|.+.|..+.+++.|+. ++++. .++|||||||||||.+|||+|.++..+|+.+...++.+. |+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkR---SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM-YV 746 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKR---SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM-YV 746 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhcccccc---ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH-Hh
Confidence 67999999999999999999888888765 35543 899999999999999999999999999999999999987 99
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|+++ ..+|++|+.|
T Consensus 747 GqSE-~NVR~VFerA----------------------------------------------------------------- 760 (953)
T KOG0736|consen 747 GQSE-ENVREVFERA----------------------------------------------------------------- 760 (953)
T ss_pred cchH-HHHHHHHHHh-----------------------------------------------------------------
Confidence 9994 4589998773
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
.+ ..+
T Consensus 761 -------------------------------------------------------------------------R~--A~P 765 (953)
T KOG0736|consen 761 -------------------------------------------------------------------------RS--AAP 765 (953)
T ss_pred -------------------------------------------------------------------------hc--cCC
Confidence 11 158
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||+||+|.+++.+..++....-.+.|..+||.-+||-.-. ++..+.+|+| +++|.-++|+|+ |||+
T Consensus 766 CVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~------~s~~VFViGA----TNRPDLLDpALLRPGRFD 835 (953)
T KOG0736|consen 766 CVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS------SSQDVFVIGA----TNRPDLLDPALLRPGRFD 835 (953)
T ss_pred eEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC------CCCceEEEec----CCCccccChhhcCCCccc
Confidence 999999999999998764322223456778899999984321 3445666666 478999999998 8999
Q ss_pred eeEecCCCCHHHH-HHHH
Q psy2392 499 IRVELDSLSISDF-TRIM 515 (1165)
Q Consensus 499 ~~v~~~~L~~~~l-~~Il 515 (1165)
-.|++.+-...+- .+||
T Consensus 836 KLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 836 KLVYVGPNEDAESKLRVL 853 (953)
T ss_pred eeEEecCCccHHHHHHHH
Confidence 9999988765543 3455
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=2e-20 Score=199.71 Aligned_cols=191 Identities=24% Similarity=0.398 Sum_probs=124.8
Q ss_pred HHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 766 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 766 ~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+||+.| ++++||++++..+...+....++. ....|+||||||||||||||+.+|++++.+|.
T Consensus 14 l~~~lRP~~L-----~efiGQ~~l~~~l~i~i~aa~~r~---------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 14 LAERLRPKSL-----DEFIGQEHLKGNLKILIRAAKKRG---------EALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp HHHHTS-SSC-----CCS-S-HHHHHHHHHHHHHHHCTT---------S---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred hHHhcCCCCH-----HHccCcHHHHhhhHHHHHHHHhcC---------CCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 4468899887 899999999999887776432111 12479999999999999999999999999999
Q ss_pred EEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 846 KIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 846 ~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
.++++.+..+ +. +..++
T Consensus 80 ~~sg~~i~k~-------~d-l~~il------------------------------------------------------- 96 (233)
T PF05496_consen 80 ITSGPAIEKA-------GD-LAAIL------------------------------------------------------- 96 (233)
T ss_dssp EEECCC--SC-------HH-HHHHH-------------------------------------------------------
T ss_pred eccchhhhhH-------HH-HHHHH-------------------------------------------------------
Confidence 8888653222 11 11110
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 97 -------------------------------------------------------------------------------- 96 (233)
T PF05496_consen 97 -------------------------------------------------------------------------------- 96 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--------eccCceEEEEecC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASG 1077 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--------~~~t~~ilfI~~g 1077 (1165)
...+++-|+||||||++.+. +|..|||.||+..+..-.| .++-.+...|+|+
T Consensus 97 -------~~l~~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 97 -------TNLKEGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -------HT--TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -------HhcCCCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 00114569999999999998 9999999999987754222 3333445555554
Q ss_pred CCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1078 AFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1078 af~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++.-+.++|..||.+...|+.++.+||.+|++..- .. .++.+++++..+||+.|-
T Consensus 157 ----Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a-----------~~--l~i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 157 ----TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA-----------RI--LNIEIDEDAAEEIARRSR 212 (233)
T ss_dssp ----SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC-----------HC--TT-EE-HHHHHHHHHCTT
T ss_pred ----ccccccchhHHhhcceecchhcCCHHHHHHHHHHHH-----------HH--hCCCcCHHHHHHHHHhcC
Confidence 366678899999999999999999999999998221 12 344888999999998764
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=1.2e-19 Score=193.93 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=80.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec--------eeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~--------~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
++.|+||||||++++. +|..|||.||++.++.-. ..++-.+...|+|+ ++..-+.
T Consensus 101 ~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT----Tr~g~ls 163 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT----TRAGLLS 163 (233)
T ss_dssp TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE----SSGCCTS
T ss_pred CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee----ccccccc
Confidence 4679999999999988 677999999998875422 13333444556553 4566788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+.|+.||.+...|+.++.+++.+|++.. ..-..+.+++++..+||..+ .+--|-.++++
T Consensus 164 ~pLrdRFgi~~~l~~Y~~~el~~Iv~r~-------------a~~l~i~i~~~~~~~Ia~rs--------rGtPRiAnrll 222 (233)
T PF05496_consen 164 SPLRDRFGIVLRLEFYSEEELAKIVKRS-------------ARILNIEIDEDAAEEIARRS--------RGTPRIANRLL 222 (233)
T ss_dssp HCCCTTSSEEEE----THHHHHHHHHHC-------------CHCTT-EE-HHHHHHHHHCT--------TTSHHHHHHHH
T ss_pred hhHHhhcceecchhcCCHHHHHHHHHHH-------------HHHhCCCcCHHHHHHHHHhc--------CCChHHHHHHH
Confidence 9999999999999999999999999522 12345688999999999877 55678888888
Q ss_pred HHH
Q psy2392 571 EKL 573 (1165)
Q Consensus 571 e~~ 573 (1165)
+++
T Consensus 223 ~rv 225 (233)
T PF05496_consen 223 RRV 225 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 56
>KOG0739|consensus
Probab=99.82 E-value=3.5e-20 Score=200.32 Aligned_cols=180 Identities=23% Similarity=0.377 Sum_probs=148.7
Q ss_pred HhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccc
Q psy2392 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 778 ~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gy 857 (1165)
.-|.+|.|.+.|+++|.+++..+++...++.+.+.+ .++||||||||+||++||+++|.+.+..|+.++.|+++++ |
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P--wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK-W 206 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP--WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-W 206 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCc--ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH-H
Confidence 356899999999999999999999999998887654 5899999999999999999999999999999999999999 9
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
.|++ +.+++.||+.|+.+
T Consensus 207 mGES-EkLVknLFemARe~------------------------------------------------------------- 224 (439)
T KOG0739|consen 207 MGES-EKLVKNLFEMAREN------------------------------------------------------------- 224 (439)
T ss_pred hccH-HHHHHHHHHHHHhc-------------------------------------------------------------
Confidence 9999 67899998877333
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.
T Consensus 225 -------------------------------------------------------------------------------k 225 (439)
T KOG0739|consen 225 -------------------------------------------------------------------------------K 225 (439)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+.||||||||.+++.++. +.++++|. ...++|--|-| -..+++-+|+.+++ +-||.|..++++||.-
T Consensus 226 PSIIFiDEiDslcg~r~e-nEseasRR-IKTEfLVQMqG-------VG~d~~gvLVLgAT----NiPw~LDsAIRRRFek 292 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSE-NESEASRR-IKTEFLVQMQG-------VGNDNDGVLVLGAT----NIPWVLDSAIRRRFEK 292 (439)
T ss_pred CcEEEeehhhhhccCCCC-CchHHHHH-HHHHHHHhhhc-------cccCCCceEEEecC----CCchhHHHHHHHHhhc
Confidence 689999999999988654 33455554 55566655665 34567888988875 4899999999999999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
|+.++-+.+....++++
T Consensus 293 RIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFK 309 (439)
T ss_pred ceeccCCcHHHhhhhhe
Confidence 98877666665555544
No 57
>KOG0738|consensus
Probab=99.81 E-value=3.6e-20 Score=206.71 Aligned_cols=181 Identities=20% Similarity=0.375 Sum_probs=150.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|..+||+.|.+|+..++..+.++.+.+-+| +++|++||||||||.|||++|.+++..|+.++.+.++++ |-|+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW--kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK-wRGe 288 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW--KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK-WRGE 288 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc--ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh-hccc
Confidence 6899999999999999999988888888766544 899999999999999999999999999999999999997 9999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +++++-||+.+
T Consensus 289 S-EKlvRlLFemA------------------------------------------------------------------- 300 (491)
T KOG0738|consen 289 S-EKLVRLLFEMA------------------------------------------------------------------- 300 (491)
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 9 78888888773
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
... .+++
T Consensus 301 -----------------------------------------------------------------------Rfy--APSt 307 (491)
T KOG0738|consen 301 -----------------------------------------------------------------------RFY--APST 307 (491)
T ss_pred -----------------------------------------------------------------------HHh--CCce
Confidence 011 3789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.|+.++.+.+..++|+ .|...||-.|||-.-+ ...+.++|+.+. ++-|+|++.+|+.||.-+|.
T Consensus 308 IFiDEIDslcs~RG~s~EHEaSR-RvKsELLvQmDG~~~t-----~e~~k~VmVLAA---TN~PWdiDEAlrRRlEKRIy 378 (491)
T KOG0738|consen 308 IFIDEIDSLCSQRGGSSEHEASR-RVKSELLVQMDGVQGT-----LENSKVVMVLAA---TNFPWDIDEALRRRLEKRIY 378 (491)
T ss_pred eehhhHHHHHhcCCCccchhHHH-HHHHHHHHHhhccccc-----cccceeEEEEec---cCCCcchHHHHHHHHhhhee
Confidence 99999999999988755555555 4888999999984322 233455665542 35699999999999999999
Q ss_pred cCCCCHHHHHHHHh
Q psy2392 503 LDSLSISDFTRIMT 516 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~ 516 (1165)
++-++.+....+++
T Consensus 379 IPLP~~~~R~~Li~ 392 (491)
T KOG0738|consen 379 IPLPDAEARSALIK 392 (491)
T ss_pred eeCCCHHHHHHHHH
Confidence 99899888877773
No 58
>KOG2004|consensus
Probab=99.81 E-value=2.9e-19 Score=211.21 Aligned_cols=250 Identities=24% Similarity=0.338 Sum_probs=193.7
Q ss_pred cccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHH
Q psy2392 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 160 t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
|.+||...+.++.++...++.|+++..|.+++|+.|.+.+... .++...+..-++|+||||+|||++|+.||
T Consensus 388 t~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA 459 (906)
T KOG2004|consen 388 TSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIA 459 (906)
T ss_pred HhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHH
Confidence 6789999999999999999999999999999999999988764 22333334789999999999999999999
Q ss_pred HHhCCCceEEecccccc--------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCC
Q psy2392 240 KLSNAPFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSN 311 (1165)
Q Consensus 240 ~~l~~~~i~ld~s~~~~--------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 311 (1165)
+.|+..|+|++-.-+.+ ..|+|.-.+.++..+-..
T Consensus 460 ~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v------------------------------------- 502 (906)
T KOG2004|consen 460 RALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV------------------------------------- 502 (906)
T ss_pred HHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh-------------------------------------
Confidence 99999999998765544 135555544433322211
Q ss_pred CccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHH
Q psy2392 312 LDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREA 391 (1165)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1165)
T Consensus 503 -------------------------------------------------------------------------------- 502 (906)
T KOG2004|consen 503 -------------------------------------------------------------------------------- 502 (906)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCce---eeeec--e
Q psy2392 392 IKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT---VNTKY--G 466 (1165)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~---v~~~~--~ 466 (1165)
--.+.+++||||||+....+ +|.+. +||.++|-.. +...| .
T Consensus 503 -------------------------~t~NPliLiDEvDKlG~g~q----GDPas-----ALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 503 -------------------------KTENPLILIDEVDKLGSGHQ----GDPAS-----ALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred -------------------------CCCCceEEeehhhhhCCCCC----CChHH-----HHHHhcChhhccchhhhcccc
Confidence 01467999999999985433 34433 7999998432 33334 4
Q ss_pred eecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHH
Q psy2392 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 546 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~ 546 (1165)
+++-+.++||||.+ .-..+.|.|+-||.+ |++..+..++-..|.. +.|+.|..+......-++.++++|+..
T Consensus 549 p~DLSkVLFicTAN----~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~---~yLip~a~~~~gl~~e~v~is~~al~~ 620 (906)
T KOG2004|consen 549 PVDLSKVLFICTAN----VIDTIPPPLLDRMEV-IELSGYVAEEKVKIAE---RYLIPQALKDCGLKPEQVKISDDALLA 620 (906)
T ss_pred ccchhheEEEEecc----ccccCChhhhhhhhe-eeccCccHHHHHHHHH---HhhhhHHHHHcCCCHHhcCccHHHHHH
Confidence 77889999999954 334577889999987 4999999999999996 778877766555555567899999999
Q ss_pred HHHHHHhccccCCccCcchhHHHHHHHHHHhhcccC
Q psy2392 547 LAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN 582 (1165)
Q Consensus 547 la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~ 582 (1165)
|++..+. ..|.|.|.+-||++...+.+...
T Consensus 621 lI~~Ycr------EaGVRnLqk~iekI~Rk~Al~vv 650 (906)
T KOG2004|consen 621 LIERYCR------EAGVRNLQKQIEKICRKVALKVV 650 (906)
T ss_pred HHHHHHH------HHhHHHHHHHHHHHHHHHHHHHH
Confidence 9887766 79999999999999988877543
No 59
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=7.5e-19 Score=198.33 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=92.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc-cCCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~-~~~p~~l~pel~~R~ 497 (1165)
.+||+||||+|.+.+... ..+.+ ..+|+.|+..||.. ..++++|++|.-. +..-..++|+|.+||
T Consensus 122 ~ggVLfIDE~~~l~~~~~---~~~~~-~e~~~~L~~~me~~----------~~~~~vI~ag~~~~~~~~~~~np~L~sR~ 187 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDN---ERDYG-SEAIEILLQVMENQ----------RDDLVVIFAGYKDRMDKFYESNPGLSSRI 187 (287)
T ss_pred cCCEEEEEccchhccCCC---ccchH-HHHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhcCHHHHHhC
Confidence 468999999999975421 12233 34777899999862 3567888887421 111123569999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccC-cchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIG-ARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~G-AR~l~~~ie~~l~~ 576 (1165)
+..|.|++++.+++.+|+. .+++ ..+ ..+++++...+....... ...++.| ||.+++++++++..
T Consensus 188 ~~~i~F~~~t~~el~~I~~----~~l~-------~~~--~~l~~~~~~~L~~~i~~~-~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 188 ANHVDFPDYTPEELLQIAK----IMLE-------EQQ--YQLTPEAEKALLDYIKKR-MEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred CceEEcCCcCHHHHHHHHH----HHHH-------Hhc--CCCChhHHHHHHHHHHHh-CCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999983 3332 223 356788777777765442 2224667 99999999999876
Q ss_pred hhc
Q psy2392 577 VSF 579 (1165)
Q Consensus 577 ~~~ 579 (1165)
.+.
T Consensus 254 ~~~ 256 (287)
T CHL00181 254 QAN 256 (287)
T ss_pred HHH
Confidence 544
No 60
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.80 E-value=1.1e-18 Score=221.55 Aligned_cols=250 Identities=21% Similarity=0.264 Sum_probs=176.9
Q ss_pred ccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEE
Q psy2392 743 GGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 822 (1165)
Q Consensus 743 ~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~ 822 (1165)
..........++..++++++.....+..++..+++.|+++++||+++++.+.+.+.....+. . ....++||+
T Consensus 282 ~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~----~----~~~~~lll~ 353 (775)
T TIGR00763 282 SSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG----K----MKGPILCLV 353 (775)
T ss_pred CCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc----C----CCCceEEEE
Confidence 34444566677888889888887667888999999999999999999999998876441111 1 113579999
Q ss_pred ccCCCChhHHHHHHHHHcCCCeEEEecCCcccc--------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHH
Q psy2392 823 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894 (1165)
Q Consensus 823 GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~--------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~ 894 (1165)
||||||||++|+++|+.++.+|++++++.+... .|+|...+. +.+.|
T Consensus 354 GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~-i~~~l------------------------ 408 (775)
T TIGR00763 354 GPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR-IIQGL------------------------ 408 (775)
T ss_pred CCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch-HHHHH------------------------
Confidence 999999999999999999999999988654321 122222111 00000
Q ss_pred HHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhh
Q psy2392 895 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974 (1165)
Q Consensus 895 ~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1165)
T Consensus 409 -------------------------------------------------------------------------------- 408 (775)
T TIGR00763 409 -------------------------------------------------------------------------------- 408 (775)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccc
Q psy2392 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 1054 (1165)
Q Consensus 975 ~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~ 1054 (1165)
+.| ...+.|||||||||+.+...+ + ....||.++
T Consensus 409 ----------------------------------~~~---~~~~~villDEidk~~~~~~~----~-----~~~aLl~~l 442 (775)
T TIGR00763 409 ----------------------------------KKA---KTKNPLFLLDEIDKIGSSFRG----D-----PASALLEVL 442 (775)
T ss_pred ----------------------------------HHh---CcCCCEEEEechhhcCCccCC----C-----HHHHHHHhc
Confidence 001 113469999999999864221 1 235788888
Q ss_pred cCc---cceeee--eeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHh
Q psy2392 1055 EGT---TVNTKY--GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 1129 (1165)
Q Consensus 1055 Eg~---~v~~k~--~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~ 1129 (1165)
|.. .....| ..++..+++|||+.+ .++.+.|+|++||.+ ++|++|+.++..+|++ +.+..++.....
T Consensus 443 d~~~~~~f~d~~~~~~~d~s~v~~I~TtN----~~~~i~~~L~~R~~v-i~~~~~~~~e~~~I~~---~~l~~~~~~~~~ 514 (775)
T TIGR00763 443 DPEQNNAFSDHYLDVPFDLSKVIFIATAN----SIDTIPRPLLDRMEV-IELSGYTEEEKLEIAK---KYLIPKALEDHG 514 (775)
T ss_pred CHHhcCccccccCCceeccCCEEEEEecC----CchhCCHHHhCCeeE-EecCCCCHHHHHHHHH---HHHHHHHHHHcC
Confidence 852 222222 256778999998764 567899999999975 6999999999999998 445444433322
Q ss_pred hcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1130 TEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1130 ~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
.....+.++++++.+|++ .|....|++|+-
T Consensus 515 l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~ 544 (775)
T TIGR00763 515 LKPDELKITDEALLLLIK-YYTREAGVRNLE 544 (775)
T ss_pred CCcceEEECHHHHHHHHH-hcChhcCChHHH
Confidence 222367999999999999 798888887753
No 61
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=192.27 Aligned_cols=173 Identities=28% Similarity=0.438 Sum_probs=137.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+||++||..-...+... .. +.....+.|+++|||||||||||++|+++|++.+.||+.+.++++... |||.
T Consensus 121 ddViGqEeAK~kcrli~~yL-en----Pe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe-hVGd 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYL-EN----PERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE-HVGD 194 (368)
T ss_pred hhhhchHHHHHHHHHHHHHh-hC----hHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH-Hhhh
Confidence 79999999987644333210 01 122234568999999999999999999999999999999999999988 9998
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ...+++++.+|.+.
T Consensus 195 g-ar~Ihely~rA~~~---------------------------------------------------------------- 209 (368)
T COG1223 195 G-ARRIHELYERARKA---------------------------------------------------------------- 209 (368)
T ss_pred H-HHHHHHHHHHHHhc----------------------------------------------------------------
Confidence 8 45688888776222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 210 ----------------------------------------------------------------------------aPci 213 (368)
T COG1223 210 ----------------------------------------------------------------------------APCI 213 (368)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 5789
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
|||||+|.|+-.+.-. --+|+|- +-++||.-++|.. ..+-+.+|||+ ++|.-|.|++.+||..-+
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi~--------eneGVvtIaaT----N~p~~LD~aiRsRFEeEI 279 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGIK--------ENEGVVTIAAT----NRPELLDPAIRSRFEEEI 279 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCcc--------cCCceEEEeec----CChhhcCHHHHhhhhhee
Confidence 9999999999775421 1246554 6789999999732 44567899996 489999999999999999
Q ss_pred EcCCCCHHHHHHHHh
Q psy2392 1100 ELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~ 1114 (1165)
+|+-++.++...||.
T Consensus 280 EF~LP~~eEr~~ile 294 (368)
T COG1223 280 EFKLPNDEERLEILE 294 (368)
T ss_pred eeeCCChHHHHHHHH
Confidence 999999999999988
No 62
>KOG0739|consensus
Probab=99.79 E-value=2.3e-19 Score=194.00 Aligned_cols=202 Identities=22% Similarity=0.357 Sum_probs=161.8
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
+.+|.|.+.|+++|.+++..+++.++++.+.|.+| .++||+||||+||++||+++|.+.+..|+.++.|+++++ |.|
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw--rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK-WmG 208 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW--RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMG 208 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcc--eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH-Hhc
Confidence 46889999999999999999999999998876544 899999999999999999999999999999999999997 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
++ +.+++.||+.+
T Consensus 209 ES-EkLVknLFemA------------------------------------------------------------------ 221 (439)
T KOG0739|consen 209 ES-EKLVKNLFEMA------------------------------------------------------------------ 221 (439)
T ss_pred cH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 99 67788888763
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.+ ..++
T Consensus 222 ------------------------------------------------------------------------Re--~kPS 227 (439)
T KOG0739|consen 222 ------------------------------------------------------------------------RE--NKPS 227 (439)
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 01 1488
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeE
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 501 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v 501 (1165)
||||||||.+|.++.. +..+++|. +...||--|.| ...+++.+|+.+++ +-|+.|+.+++.||.-||
T Consensus 228 IIFiDEiDslcg~r~e-nEseasRR-IKTEfLVQMqG-------VG~d~~gvLVLgAT----NiPw~LDsAIRRRFekRI 294 (439)
T KOG0739|consen 228 IIFIDEIDSLCGSRSE-NESEASRR-IKTEFLVQMQG-------VGNDNDGVLVLGAT----NIPWVLDSAIRRRFEKRI 294 (439)
T ss_pred EEEeehhhhhccCCCC-CchHHHHH-HHHHHHHhhhc-------cccCCCceEEEecC----CCchhHHHHHHHHhhcce
Confidence 9999999999988765 34455554 55566666666 23467888988884 679999999999999999
Q ss_pred ecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 502 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
.++-+........++ +..-...-.+++..++.|+.....
T Consensus 295 YIPLPe~~AR~~MF~-------------lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 295 YIPLPEAHARARMFK-------------LHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred eccCCcHHHhhhhhe-------------eccCCCccccchhhHHHHHhhcCC
Confidence 887777766655553 122344556788888889887754
No 63
>KOG2028|consensus
Probab=99.79 E-value=3.8e-19 Score=196.52 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=84.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+|||||+++++. +|+.+||.+|.+.++. ++.+|+|+.| .|+.+|++||+
T Consensus 222 rkTilFiDEiHRFNks-------------QQD~fLP~VE~G~I~l--IGATTENPSF------------qln~aLlSRC~ 274 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKS-------------QQDTFLPHVENGDITL--IGATTENPSF------------QLNAALLSRCR 274 (554)
T ss_pred ceeEEEeHHhhhhhhh-------------hhhcccceeccCceEE--EecccCCCcc------------chhHHHHhccc
Confidence 4579999999999987 8889999999887665 5666666666 79999999999
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
++ .|++|+.+.+..||...-..|.+-.+.--...+-...+++.+|++|+.++-...+.+.|
T Consensus 275 Vf-vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 275 VF-VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred ee-EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH
Confidence 97 59999999999999933333322111111112323467899999999888766665555
No 64
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=3e-18 Score=191.24 Aligned_cols=133 Identities=19% Similarity=0.334 Sum_probs=93.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccC-CCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA-KPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~-~p~~l~pel~~R~ 497 (1165)
.++|+||||||.+....+. + .....++.|++.+|.. +.++.+|++|..... ....++|+|.+||
T Consensus 105 ~~~VL~IDE~~~L~~~~~~----~-~~~~~i~~Ll~~~e~~----------~~~~~vila~~~~~~~~~~~~~p~L~sRf 169 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEK----D-FGKEAIDTLVKGMEDN----------RNEFVLILAGYSDEMDYFLSLNPGLRSRF 169 (261)
T ss_pred cCCEEEEechhhhccCCcc----c-hHHHHHHHHHHHHhcc----------CCCEEEEecCCcchhHHHHhcChHHHhcc
Confidence 3689999999999743211 1 1233677899988863 355677887753222 2234789999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhcc--ccCCccCcchhHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN--ERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~--~~~~~~GAR~l~~~ie~~l~ 575 (1165)
+..|.|++++.+++.+|+. .+ +... .+.+++++++.|++.....- .....+.||.+++++|.++.
T Consensus 170 ~~~i~f~~~~~~el~~Il~----~~-------~~~~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAE----RM-------VKER--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred ceEEEECCCCHHHHHHHHH----HH-------HHHc--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999994 22 2223 34789999999987654321 12235679999999999887
Q ss_pred Hhhc
Q psy2392 576 EVSF 579 (1165)
Q Consensus 576 ~~~~ 579 (1165)
..+.
T Consensus 237 ~~~~ 240 (261)
T TIGR02881 237 RQAV 240 (261)
T ss_pred HHHH
Confidence 6543
No 65
>KOG0728|consensus
Probab=99.78 E-value=3.6e-19 Score=188.33 Aligned_cols=243 Identities=22% Similarity=0.364 Sum_probs=181.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
+-|.|.+..++.|.+.+..+.+++.+++.++.. .|+++||+||||+|||.||+++|......|++++.|+++++ |+|+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIa-QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~ige 224 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE 224 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCC-CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH-Hhhh
Confidence 467899999999999999999999999888765 57899999999999999999999999999999999999987 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..+++++|-.+
T Consensus 225 g-srmvrelfvma------------------------------------------------------------------- 236 (404)
T KOG0728|consen 225 G-SRMVRELFVMA------------------------------------------------------------------- 236 (404)
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 66778777441
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
..+ .++|
T Consensus 237 -----------------------------------------------------------------------reh--apsi 243 (404)
T KOG0728|consen 237 -----------------------------------------------------------------------REH--APSI 243 (404)
T ss_pred -----------------------------------------------------------------------Hhc--CCce
Confidence 222 3889
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||.||||.|.+++..++++ +...||+.+|.++-. --|--.|.||-+|+++ ++-.-++|+|+ ||++..
T Consensus 244 ifmdeidsigs~r~e~~~g--gdsevqrtmlellnq-----ldgfeatknikvimat----nridild~allrpgridrk 312 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSG--GDSEVQRTMLELLNQ-----LDGFEATKNIKVIMAT----NRIDILDPALLRPGRIDRK 312 (404)
T ss_pred EeeecccccccccccCCCC--ccHHHHHHHHHHHHh-----ccccccccceEEEEec----cccccccHhhcCCCccccc
Confidence 9999999999887654432 223499988776632 1133467889888884 45566889998 899999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
++|+|++++...+||+.-.+.+ --+.|+++ +.||+ ..| ...||- ++.+ +.+.-+|.
T Consensus 313 iefp~p~e~ar~~ilkihsrkm-------nl~rgi~l-------~kiae---km~---gasgae-vk~v---cteagm~a 368 (404)
T KOG0728|consen 313 IEFPPPNEEARLDILKIHSRKM-------NLTRGINL-------RKIAE---KMP---GASGAE-VKGV---CTEAGMYA 368 (404)
T ss_pred ccCCCCCHHHHHHHHHHhhhhh-------chhcccCH-------HHHHH---hCC---CCccch-hhhh---hhhhhHHH
Confidence 9999999999999996322211 12456643 34444 332 234552 3333 34556666
Q ss_pred cCCCeeEEcccccccccccCccc
Q psy2392 581 SNNISLLVDADYVNSRLGDLSIN 603 (1165)
Q Consensus 581 ~~~~~~~i~~~~v~~~~~~~~~~ 603 (1165)
.-++.+.+|.+..+-.+.+.+++
T Consensus 369 lrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 369 LRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred HHHhhccccHHHHHHHHHHHHhc
Confidence 66666889988888777776654
No 66
>KOG0727|consensus
Probab=99.78 E-value=6.9e-19 Score=186.43 Aligned_cols=173 Identities=27% Similarity=0.477 Sum_probs=134.0
Q ss_pred hcccchHHHHHHHHHHHHhH------hhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNR------WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~------~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
.+|.|.+-.+.++++++..+ |+..|+. +|.++|||||||||||+|++++|+.....|+++.+|+|++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigid-------pprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGID-------PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCC-------CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 68999999999999999764 3444443 2789999999999999999999999999999999999999
Q ss_pred ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccC
Q psy2392 855 VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREG 934 (1165)
Q Consensus 855 ~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g 934 (1165)
+ |.|+++ .+++++|+.|+.+
T Consensus 228 k-ylgegp-rmvrdvfrlaken---------------------------------------------------------- 247 (408)
T KOG0727|consen 228 K-YLGEGP-RMVRDVFRLAKEN---------------------------------------------------------- 247 (408)
T ss_pred H-HhccCc-HHHHHHHHHHhcc----------------------------------------------------------
Confidence 9 999995 6899999888333
Q ss_pred CCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q psy2392 935 ALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN 1014 (1165)
Q Consensus 935 ~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~ 1014 (1165)
T Consensus 248 -------------------------------------------------------------------------------- 247 (408)
T KOG0727|consen 248 -------------------------------------------------------------------------------- 247 (408)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--
Q psy2392 1015 VEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-- 1092 (1165)
Q Consensus 1015 ~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~-- 1092 (1165)
.++||||||||.|++.+.. ..+.+.+| |||-|+.++-. .-|--.|.|+-.|++++ +...|.|+|+
T Consensus 248 --apsiifideidaiatkrfd-aqtgadre-vqril~ellnq-----mdgfdq~~nvkvimatn----radtldpallrp 314 (408)
T KOG0727|consen 248 --APSIIFIDEIDAIATKRFD-AQTGADRE-VQRILIELLNQ-----MDGFDQTTNVKVIMATN----RADTLDPALLRP 314 (408)
T ss_pred --CCcEEEeehhhhHhhhhcc-ccccccHH-HHHHHHHHHHh-----ccCcCcccceEEEEecC----cccccCHhhcCC
Confidence 4679999999999998754 22233455 99987766421 11344556777777753 5667889888
Q ss_pred ccCCeEEEcCCCCHHHHHHHH
Q psy2392 1093 GRFPIRVELDSLSISDFTRIM 1113 (1165)
Q Consensus 1093 gR~~i~v~l~~l~~~~l~~il 1113 (1165)
||+.-.++|+-.+..+-.-++
T Consensus 315 grldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 315 GRLDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred ccccccccCCCCchhhhhhhH
Confidence 799999999866655543333
No 67
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=5.7e-18 Score=191.17 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=92.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-CCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~R~ 497 (1165)
.+|++||||||.+++.... .+. ...+|+.|+..||.. ..++.+|++|.... ..-..++|+|.+||
T Consensus 121 ~~gvL~iDEi~~L~~~~~~---~~~-~~~~~~~Ll~~le~~----------~~~~~vI~a~~~~~~~~~~~~np~L~sR~ 186 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNE---RDY-GQEAIEILLQVMENQ----------RDDLVVILAGYKDRMDSFFESNPGFSSRV 186 (284)
T ss_pred cCcEEEEechhhhccCCCc---cch-HHHHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhhCHHHHhhC
Confidence 3689999999999754221 122 334778999999853 25677888875220 11112589999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccC-cchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIG-ARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~G-AR~l~~~ie~~l~~ 576 (1165)
+..|.|++|+.+|+.+|+. .++++ .+ ..+++++++.+..+.... ...++.| ||.|++++++.+..
T Consensus 187 ~~~i~fp~l~~edl~~I~~----~~l~~-------~~--~~l~~~a~~~L~~~l~~~-~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 187 AHHVDFPDYSEAELLVIAG----LMLKE-------QQ--YRFSAEAEEAFADYIALR-RTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CcEEEeCCcCHHHHHHHHH----HHHHH-------hc--cccCHHHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999984 33322 22 357889998887764321 1123455 99999999999866
Q ss_pred hhc
Q psy2392 577 VSF 579 (1165)
Q Consensus 577 ~~~ 579 (1165)
.+.
T Consensus 253 ~~~ 255 (284)
T TIGR02880 253 QAN 255 (284)
T ss_pred HHH
Confidence 543
No 68
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.76 E-value=8.6e-18 Score=211.68 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=179.8
Q ss_pred cccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEE
Q psy2392 742 SGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILM 821 (1165)
Q Consensus 742 ~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL 821 (1165)
.........-.+++-.+.+||.....+.....+.++.|+++++|++.+|+.|.+++.... .. ... ....++|
T Consensus 283 ~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~-~~---~~~----~g~~i~l 354 (784)
T PRK10787 283 PMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQS-RV---NKI----KGPILCL 354 (784)
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHH-hc---ccC----CCceEEE
Confidence 344445555666666677888777777889999999999999999999999998887431 11 111 1357999
Q ss_pred EccCCCChhHHHHHHHHHcCCCeEEEecCCcccc--------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHH
Q psy2392 822 IGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893 (1165)
Q Consensus 822 ~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~--------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a 893 (1165)
+||||||||++++.+|+.++.+|++++++...+. .|+|..++.
T Consensus 355 ~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~----------------------------- 405 (784)
T PRK10787 355 VGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGK----------------------------- 405 (784)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcH-----------------------------
Confidence 9999999999999999999999999987664321 011111110
Q ss_pred HHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHh
Q psy2392 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 973 (1165)
Q Consensus 894 ~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1165)
+.+
T Consensus 406 ---------------------------------------------------------------------~~~-------- 408 (784)
T PRK10787 406 ---------------------------------------------------------------------LIQ-------- 408 (784)
T ss_pred ---------------------------------------------------------------------HHH--------
Confidence 000
Q ss_pred hCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHh-hhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccc
Q psy2392 974 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN-VEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLP 1052 (1165)
Q Consensus 974 ~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~-~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~ 1052 (1165)
++.. ...+.++|||||||+.....+ ..+..||+
T Consensus 409 -------------------------------------~l~~~~~~~~villDEidk~~~~~~g---------~~~~aLle 442 (784)
T PRK10787 409 -------------------------------------KMAKVGVKNPLFLLDEIDKMSSDMRG---------DPASALLE 442 (784)
T ss_pred -------------------------------------HHHhcCCCCCEEEEEChhhcccccCC---------CHHHHHHH
Confidence 0011 114569999999999865221 15779999
Q ss_pred cccCccc---eeeee--eccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHH
Q psy2392 1053 LVEGTTV---NTKYG--IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 1127 (1165)
Q Consensus 1053 ~~Eg~~v---~~k~~--~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l 1127 (1165)
++|.... ...|. +.+.++++|||+..+ ..+.|+|++||.+ ++|.+|+.+++.+|.+ +.++.++.+-
T Consensus 443 vld~~~~~~~~d~~~~~~~dls~v~~i~TaN~-----~~i~~aLl~R~~i-i~~~~~t~eek~~Ia~---~~L~~k~~~~ 513 (784)
T PRK10787 443 VLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS-----MNIPAPLLDRMEV-IRLSGYTEDEKLNIAK---RHLLPKQIER 513 (784)
T ss_pred HhccccEEEEecccccccccCCceEEEEcCCC-----CCCCHHHhcceee-eecCCCCHHHHHHHHH---HhhhHHHHHH
Confidence 9986432 22343 568899999997643 3699999999986 6999999999999999 5555333333
Q ss_pred HhhcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1128 LATEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1128 ~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
.+..+..+.+++++++.|++ .|....|++|+-
T Consensus 514 ~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~Le 545 (784)
T PRK10787 514 NALKKGELTVDDSAIIGIIR-YYTREAGVRSLE 545 (784)
T ss_pred hCCCCCeEEECHHHHHHHHH-hCCcccCCcHHH
Confidence 36666789999999999997 888888888753
No 69
>KOG0735|consensus
Probab=99.76 E-value=1.5e-17 Score=196.44 Aligned_cols=306 Identities=20% Similarity=0.230 Sum_probs=203.3
Q ss_pred eeecCCe-EEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhh
Q psy2392 25 SVRRGNK-VSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEA-NLEKHQGNLMRASVELAKEW 102 (1165)
Q Consensus 25 aLARGel-~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~-~yE~~h~~al~~~v~ls~rY 102 (1165)
.+.++.+ .+||. -+|..+ |-+.--..++ || -|.+++.|..++--.||+.+-. ++-.--.+-|.-....+.-|
T Consensus 535 y~~~~~~ia~Iat--~qe~qt-l~~~L~s~~~--Fq-~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 535 YLKRNRKIAVIAT--GQELQT-LNPLLVSPLL--FQ-IVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred HHccCcEEEEEEe--chhhhh-cChhhcCccc--eE-EEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 3455555 56653 345544 5544445556 99 5889999999999999998744 33221225666666666777
Q ss_pred cCCCCchhHHHHHhhhhhhh-hhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHh
Q psy2392 103 RNDRTLRRLEAMLLTANRET-TLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSEL 181 (1165)
Q Consensus 103 i~~r~lPDkalld~a~a~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L 181 (1165)
.+ -|..++-+.+-..+ ...++..+..+.-+...+.+....+.+..-.. +.+.+++-
T Consensus 609 ~~----~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik-~~k~tgi~------------------ 665 (952)
T KOG0735|consen 609 LA----TDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIK-LVKSTGIR------------------ 665 (952)
T ss_pred cc----hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhcc-ccccCCCC------------------
Confidence 65 34433211111111 11122122222222222222211111100000 01111211
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
+++|.|..+++..+.+.+.++-+++.++...+-. .+.++|||||||||||.||.++|..++..|+.+-+.++.++ |+|
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K-yIG 743 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK-YIG 743 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH-Hhc
Confidence 3689999999999999999887777775543221 34899999999999999999999999999999999999987 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..+|++|..|
T Consensus 744 aS-Eq~vR~lF~rA------------------------------------------------------------------ 756 (952)
T KOG0735|consen 744 AS-EQNVRDLFERA------------------------------------------------------------------ 756 (952)
T ss_pred cc-HHHHHHHHHHh------------------------------------------------------------------
Confidence 99 45589998773
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
++..+|
T Consensus 757 --------------------------------------------------------------------------~~a~PC 762 (952)
T KOG0735|consen 757 --------------------------------------------------------------------------QSAKPC 762 (952)
T ss_pred --------------------------------------------------------------------------hccCCe
Confidence 012589
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|+|+||+|.+++++.-.+++ + -+.|.++||+-|||... -+-+.++|+ +++|.-++|+|+ ||++.
T Consensus 763 iLFFDEfdSiAPkRGhDsTG-V-TDRVVNQlLTelDG~Eg--------l~GV~i~aa----TsRpdliDpALLRpGRlD~ 828 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTG-V-TDRVVNQLLTELDGAEG--------LDGVYILAA----TSRPDLIDPALLRPGRLDK 828 (952)
T ss_pred EEEeccccccCcccCCCCCC-c-hHHHHHHHHHhhccccc--------cceEEEEEe----cCCccccCHhhcCCCccce
Confidence 99999999999987543321 1 23588899999998542 234556666 378999999998 89999
Q ss_pred eEecCCCCHHHHHHHHh
Q psy2392 500 RVELDSLSISDFTRIMT 516 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~ 516 (1165)
.|.-+.+++.+..+||+
T Consensus 829 ~v~C~~P~~~eRl~il~ 845 (952)
T KOG0735|consen 829 LVYCPLPDEPERLEILQ 845 (952)
T ss_pred eeeCCCCCcHHHHHHHH
Confidence 99999999999999994
No 70
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-17 Score=199.81 Aligned_cols=259 Identities=20% Similarity=0.253 Sum_probs=183.0
Q ss_pred ccccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEE
Q psy2392 741 GSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNIL 820 (1165)
Q Consensus 741 ~~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iL 820 (1165)
.+....+..+...|.=.+.+||..-..+.....+..+.|+++..|.+++|+.|.+.+...... ...+ .+-+|
T Consensus 283 ~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~----~~~k----GpILc 354 (782)
T COG0466 283 SPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT----KKLK----GPILC 354 (782)
T ss_pred CCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh----ccCC----CcEEE
Confidence 334445555666665567888888777899999999999999999999999999998754212 2222 26789
Q ss_pred EEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHh
Q psy2392 821 MIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDI 900 (1165)
Q Consensus 821 L~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ 900 (1165)
|+||||+|||+|++.+|+.++..|+++.-.-..+.
T Consensus 355 LVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE--------------------------------------------- 389 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE--------------------------------------------- 389 (782)
T ss_pred EECCCCCCchhHHHHHHHHhCCCEEEEecCccccH---------------------------------------------
Confidence 99999999999999999999999999877543321
Q ss_pred hcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCcc
Q psy2392 901 LVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKK 980 (1165)
Q Consensus 901 ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1165)
.+++++|.++ ++++|| -+.|.|+
T Consensus 390 -----------------AEIRGHRRTY--------------------------IGamPG--rIiQ~mk------------ 412 (782)
T COG0466 390 -----------------AEIRGHRRTY--------------------------IGAMPG--KIIQGMK------------ 412 (782)
T ss_pred -----------------HHhccccccc--------------------------cccCCh--HHHHHHH------------
Confidence 0112222222 111222 0111111
Q ss_pred ceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce
Q psy2392 981 TRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN 1060 (1165)
Q Consensus 981 ~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~ 1060 (1165)
+....+-+++||||||++++..| |.++ +||.+++..+.+
T Consensus 413 --------------------------------ka~~~NPv~LLDEIDKm~ss~rG----DPaS-----ALLEVLDPEQN~ 451 (782)
T COG0466 413 --------------------------------KAGVKNPVFLLDEIDKMGSSFRG----DPAS-----ALLEVLDPEQNN 451 (782)
T ss_pred --------------------------------HhCCcCCeEEeechhhccCCCCC----ChHH-----HHHhhcCHhhcC
Confidence 11225679999999999987443 4333 799999876544
Q ss_pred e---eee--eccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCce
Q psy2392 1061 T---KYG--IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKI 1135 (1165)
Q Consensus 1061 ~---k~~--~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l 1135 (1165)
+ .|- +.+-++++|||+.+. ...+-++|+.||.+ ++++.+++++-.+|.+ +.|+.++.+--+-..-+|
T Consensus 452 ~F~DhYLev~yDLS~VmFiaTANs----l~tIP~PLlDRMEi-I~lsgYt~~EKl~IAk---~~LiPk~~~~~gL~~~el 523 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIATANS----LDTIPAPLLDRMEV-IRLSGYTEDEKLEIAK---RHLIPKQLKEHGLKKGEL 523 (782)
T ss_pred chhhccccCccchhheEEEeecCc----cccCChHHhcceee-eeecCCChHHHHHHHH---HhcchHHHHHcCCCccce
Confidence 3 343 778899999999652 23355789999998 5999999999999999 666666554444444579
Q ss_pred EeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1136 EFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1136 ~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
.|+|+||..|++ -|-.+.|.+|.
T Consensus 524 ~i~d~ai~~iI~-~YTREAGVR~L 546 (782)
T COG0466 524 TITDEAIKDIIR-YYTREAGVRNL 546 (782)
T ss_pred eecHHHHHHHHH-HHhHhhhhhHH
Confidence 999999999987 56667777663
No 71
>KOG0727|consensus
Probab=99.75 E-value=3.3e-18 Score=181.30 Aligned_cols=176 Identities=26% Similarity=0.457 Sum_probs=137.0
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
-.+|.|.+-.+..+++++..++.+..+....+.. +|.++|+|||||||||+||+++|+.....|+++..|+|+.+ |.|
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefvqk-ylg 231 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLG 231 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH-Hhc
Confidence 4589999999999999998776665554443322 46899999999999999999999999999999999999997 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
++ ..+++++|+.+
T Consensus 232 eg-prmvrdvfrla------------------------------------------------------------------ 244 (408)
T KOG0727|consen 232 EG-PRMVRDVFRLA------------------------------------------------------------------ 244 (408)
T ss_pred cC-cHHHHHHHHHH------------------------------------------------------------------
Confidence 98 67899999773
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.++ .++
T Consensus 245 ------------------------------------------------------------------------ken--aps 250 (408)
T KOG0727|consen 245 ------------------------------------------------------------------------KEN--APS 250 (408)
T ss_pred ------------------------------------------------------------------------hcc--CCc
Confidence 111 378
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
||||||||.|++++.+.++ .+.+ .||+-|+.++ +|- =.+.|+-+|+++ ++...+.|+|+ ||
T Consensus 251 iifideidaiatkrfdaqt-gadr-evqril~ellnqmdgf--------dq~~nvkvimat----nradtldpallrpgr 316 (408)
T KOG0727|consen 251 IIFIDEIDAIATKRFDAQT-GADR-EVQRILIELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGR 316 (408)
T ss_pred EEEeehhhhHhhhhccccc-cccH-HHHHHHHHHHHhccCc--------CcccceEEEEec----CcccccCHhhcCCcc
Confidence 9999999999999887442 2223 3888766554 552 245677788874 56677999998 89
Q ss_pred CCeeEecCCCCHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRI 514 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~I 514 (1165)
++..++|+-++..+-.-+
T Consensus 317 ldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 317 LDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred ccccccCCCCchhhhhhh
Confidence 999999997766554333
No 72
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=9.6e-18 Score=189.39 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=80.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCC-CCCCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~-~~~p~dl~pel~gR~ 1095 (1165)
..||+||||+|.+..... ..+.+. .+|+.|+.+||.. ..++.+|++|.-. +..-.++.|+|.+||
T Consensus 122 ~ggVLfIDE~~~l~~~~~---~~~~~~-e~~~~L~~~me~~----------~~~~~vI~ag~~~~~~~~~~~np~L~sR~ 187 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDN---ERDYGS-EAIEILLQVMENQ----------RDDLVVIFAGYKDRMDKFYESNPGLSSRI 187 (287)
T ss_pred cCCEEEEEccchhccCCC---ccchHH-HHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhcCHHHHHhC
Confidence 468999999999975421 223333 4788999999852 3567888988521 011123569999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
+..++|++++.+++.+|+. .+ ++.++. .+++++...+....... ....+.|
T Consensus 188 ~~~i~F~~~t~~el~~I~~----~~-------l~~~~~--~l~~~~~~~L~~~i~~~-~~~~~~G 238 (287)
T CHL00181 188 ANHVDFPDYTPEELLQIAK----IM-------LEEQQY--QLTPEAEKALLDYIKKR-MEQPLFA 238 (287)
T ss_pred CceEEcCCcCHHHHHHHHH----HH-------HHHhcC--CCChhHHHHHHHHHHHh-CCCCCCc
Confidence 9999999999999999998 33 333344 57788888777765542 2223455
No 73
>KOG0728|consensus
Probab=99.74 E-value=3.6e-18 Score=180.88 Aligned_cols=181 Identities=25% Similarity=0.437 Sum_probs=146.7
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
+-|.|.+..+++|.+.|..+.+...+++.+... +|+++|||||||+|||.||+++|....+.|+++++|+++++ |+|+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIa-QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~ige 224 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE 224 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCC-CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH-Hhhh
Confidence 568899999999999999888887777766543 47999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..+++++|-.|+.+
T Consensus 225 g-srmvrelfvmareh---------------------------------------------------------------- 239 (404)
T KOG0728|consen 225 G-SRMVRELFVMAREH---------------------------------------------------------------- 239 (404)
T ss_pred h-HHHHHHHHHHHHhc----------------------------------------------------------------
Confidence 8 57899998665222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.+.|
T Consensus 240 ----------------------------------------------------------------------------apsi 243 (404)
T KOG0728|consen 240 ----------------------------------------------------------------------------APSI 243 (404)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 4679
Q ss_pred eeehhhhhhhccCC-CCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSS-QNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~-~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
||.||||.|.+.+. +++|+| .-|||.+|.++-. --|--.|.||-.|.++. +-.-|.|+|+ ||+.-
T Consensus 244 ifmdeidsigs~r~e~~~ggd---sevqrtmlellnq-----ldgfeatknikvimatn----ridild~allrpgridr 311 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGD---SEVQRTMLELLNQ-----LDGFEATKNIKVIMATN----RIDILDPALLRPGRIDR 311 (404)
T ss_pred EeeecccccccccccCCCCcc---HHHHHHHHHHHHh-----ccccccccceEEEEecc----ccccccHhhcCCCcccc
Confidence 99999999998854 333333 3499988877642 11556678888888864 3334668887 89999
Q ss_pred EEEcCCCCHHHHHHHHhhh
Q psy2392 1098 RVELDSLSISDFTRIMTST 1116 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~ 1116 (1165)
.++|+|++++....||+--
T Consensus 312 kiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 312 KIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cccCCCCCHHHHHHHHHHh
Confidence 9999999999999999843
No 74
>KOG0731|consensus
Probab=99.74 E-value=7.4e-18 Score=205.16 Aligned_cols=173 Identities=27% Similarity=0.495 Sum_probs=145.8
Q ss_pred hcccchHHHHHHHHHHHHh-----HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRN-----RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~-----~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
++|.|.++|+++|.+.+.. .|.++|... |+++||+||||||||.|||++|.+.+.||+.+++|+|++.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi-------PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI-------PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC-------cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 6899999999999988863 344444332 7999999999999999999999999999999999999998
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|+|.+ ...++++|..|+.+
T Consensus 384 -~~g~~-asrvr~lf~~ar~~----------------------------------------------------------- 402 (774)
T KOG0731|consen 384 -FVGVG-ASRVRDLFPLARKN----------------------------------------------------------- 402 (774)
T ss_pred -hcccc-hHHHHHHHHHhhcc-----------------------------------------------------------
Confidence 88887 56799998777333
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 403 -------------------------------------------------------------------------------- 402 (774)
T KOG0731|consen 403 -------------------------------------------------------------------------------- 402 (774)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCC--CCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQ--NNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 1092 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~--~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~- 1092 (1165)
.++||||||||.++..+.+ ..++...+|---+.||+-|+|. ..+++++|+|++ ++|.-|.|+|+
T Consensus 403 -aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf--------~~~~~vi~~a~t----nr~d~ld~allr 469 (774)
T KOG0731|consen 403 -APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF--------ETSKGVIVLAAT----NRPDILDPALLR 469 (774)
T ss_pred -CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC--------cCCCcEEEEecc----CCccccCHHhcC
Confidence 4679999999999999753 3456667777778899999974 345789999996 48888999999
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1093 -GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1093 -gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||.-.+.++.++.....+|++
T Consensus 470 pGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 470 PGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred CCccccceeccCCchhhhHHHHH
Confidence 8999999999999999999998
No 75
>KOG0731|consensus
Probab=99.74 E-value=1.6e-17 Score=202.29 Aligned_cols=178 Identities=27% Similarity=0.491 Sum_probs=142.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.++|+..|.+.+.- ++.+.-...++.. .|+++||+||||||||.|||++|.+.+.||+.+++|+|++. |+|-
T Consensus 311 kDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAK-iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~-~~g~ 387 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKF-LKNPEQYQELGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGV 387 (774)
T ss_pred ccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCc-CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH-hccc
Confidence 5899999999999887752 1111111111111 36899999999999999999999999999999999999984 7777
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++++|..+
T Consensus 388 ~-asrvr~lf~~a------------------------------------------------------------------- 399 (774)
T KOG0731|consen 388 G-ASRVRDLFPLA------------------------------------------------------------------- 399 (774)
T ss_pred c-hHHHHHHHHHh-------------------------------------------------------------------
Confidence 6 56688888662
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
..+ .++|
T Consensus 400 -----------------------------------------------------------------------r~~--aP~i 406 (774)
T KOG0731|consen 400 -----------------------------------------------------------------------RKN--APSI 406 (774)
T ss_pred -----------------------------------------------------------------------hcc--CCeE
Confidence 111 3899
Q ss_pred EEEecchhhhccCCC--CCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 423 IFLDEIDKITTRSSQ--NNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 423 ifiDEidki~~~~~~--~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
|||||||.+...+.+ ..+++-++|.--++||+-|||-. .+.+++|+|++ ++|.-++|+|+ |||+
T Consensus 407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~--------~~~~vi~~a~t----nr~d~ld~allrpGRfd 474 (774)
T KOG0731|consen 407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE--------TSKGVIVLAAT----NRPDILDPALLRPGRFD 474 (774)
T ss_pred EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc--------CCCcEEEEecc----CCccccCHHhcCCCccc
Confidence 999999999998853 33567788888889999999843 34679999984 68999999999 8999
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
..|.++.++.....+|+.
T Consensus 475 r~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 475 RQIQIDLPDVKGRASILK 492 (774)
T ss_pred cceeccCCchhhhHHHHH
Confidence 999999999999999995
No 76
>KOG0734|consensus
Probab=99.73 E-value=7.4e-18 Score=193.66 Aligned_cols=176 Identities=27% Similarity=0.453 Sum_probs=134.8
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|.|.++|+.++.+.+... +...-+..+..+ -|+++||+||||+|||.|||++|.+.+.||+...+|+|-+. |||.
T Consensus 304 ~dVkG~DEAK~ELeEiVefL-kdP~kftrLGGK-LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm-~VGv 380 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFL-KDPTKFTRLGGK-LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM-FVGV 380 (752)
T ss_pred ccccChHHHHHHHHHHHHHh-cCcHHhhhccCc-CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh-hhcc
Confidence 79999999998888776521 111111111111 26999999999999999999999999999999999999998 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+. ..+|+||..|++.
T Consensus 381 GA-rRVRdLF~aAk~~---------------------------------------------------------------- 395 (752)
T KOG0734|consen 381 GA-RRVRDLFAAAKAR---------------------------------------------------------------- 395 (752)
T ss_pred cH-HHHHHHHHHHHhc----------------------------------------------------------------
Confidence 94 5699999877333
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 396 ----------------------------------------------------------------------------APcI 399 (752)
T KOG0734|consen 396 ----------------------------------------------------------------------------APCI 399 (752)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 4679
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||||.+.+.+...... ..+. --+.||--|+|. -.++-|.+|++++| |.+|.|+|. |||...
T Consensus 400 IFIDEiDavG~kR~~~~~~-y~kq-TlNQLLvEmDGF--------~qNeGiIvigATNf----pe~LD~AL~RPGRFD~~ 465 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQH-YAKQ-TLNQLLVEMDGF--------KQNEGIIVIGATNF----PEALDKALTRPGRFDRH 465 (752)
T ss_pred EEEechhhhcccCCccHHH-HHHH-HHHHHHHHhcCc--------CcCCceEEEeccCC----hhhhhHHhcCCCcccee
Confidence 9999999999875431111 2221 225677777864 34567889999875 788999887 899999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
|..+.++-.-..+||+
T Consensus 466 v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 466 VTVPLPDVRGRTEILK 481 (752)
T ss_pred EecCCCCcccHHHHHH
Confidence 9999999988988888
No 77
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.73 E-value=4.7e-17 Score=184.26 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=120.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 895 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~ 895 (1165)
|..++||||||||||.+|+++|+.++.+|+.++++++.++ |+|++ +..++++|..|...++
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk-~vGEs-Ek~IR~~F~~A~~~a~----------------- 208 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE-NAGEP-GKLIRQRYREAADIIK----------------- 208 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC-cCCcH-HHHHHHHHHHHHHHhh-----------------
Confidence 6899999999999999999999999999999999999998 99998 5779999987722200
Q ss_pred HHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhC
Q psy2392 896 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 975 (1165)
Q Consensus 896 ~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1165)
T Consensus 209 -------------------------------------------------------------------------------- 208 (413)
T PLN00020 209 -------------------------------------------------------------------------------- 208 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc
Q psy2392 976 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 1055 (1165)
Q Consensus 976 ~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E 1055 (1165)
...+++||||||||+++....+ ....+...-|...||.+++
T Consensus 209 --------------------------------------~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~D 249 (413)
T PLN00020 209 --------------------------------------KKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIAD 249 (413)
T ss_pred --------------------------------------ccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHhc
Confidence 0115789999999999988653 2223333334567888888
Q ss_pred Ccc-cee--ee-eeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1056 GTT-VNT--KY-GIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1056 g~~-v~~--k~-~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
+-+ |.. -| ..-.+.++.+|++| ++|+.|.|+|++ ||+..+ ..++.++...||+
T Consensus 250 ~p~~v~l~G~w~~~~~~~~V~VIaTT----Nrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~ 308 (413)
T PLN00020 250 NPTNVSLGGDWREKEEIPRVPIIVTG----NDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVH 308 (413)
T ss_pred CCccccccccccccccCCCceEEEeC----CCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHH
Confidence 632 222 12 22346778889988 699999999997 999864 4689999999998
No 78
>KOG2004|consensus
Probab=99.73 E-value=3.3e-17 Score=193.98 Aligned_cols=242 Identities=24% Similarity=0.353 Sum_probs=179.8
Q ss_pred HHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCCh
Q psy2392 750 AAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGK 829 (1165)
Q Consensus 750 ~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GK 829 (1165)
.-.+|+=.|.+||.....+......-++.|+++..|++++|+.|.+.|... + +++..+.+.+||+||||+||
T Consensus 380 trNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--k------Lrgs~qGkIlCf~GPPGVGK 451 (906)
T KOG2004|consen 380 TRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG--K------LRGSVQGKILCFVGPPGVGK 451 (906)
T ss_pred HHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH--h------hcccCCCcEEEEeCCCCCCc
Confidence 334444447788888877899999999999999999999999999999864 2 22222347899999999999
Q ss_pred hHHHHHHHHHcCCCeEEEecCCcccc--------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhh
Q psy2392 830 TEIARRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDIL 901 (1165)
Q Consensus 830 T~lAk~lA~~l~~~fi~l~~se~~~~--------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~l 901 (1165)
|++++.+|+.+|..|++++-.-+++. -|+|.-++.
T Consensus 452 TSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGk------------------------------------- 494 (906)
T KOG2004|consen 452 TSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGK------------------------------------- 494 (906)
T ss_pred ccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChH-------------------------------------
Confidence 99999999999999999987554431 133333332
Q ss_pred cCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccc
Q psy2392 902 VPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 981 (1165)
Q Consensus 902 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1165)
|.+.|+..
T Consensus 495 -------------------------------------------------------------iIq~LK~v----------- 502 (906)
T KOG2004|consen 495 -------------------------------------------------------------IIQCLKKV----------- 502 (906)
T ss_pred -------------------------------------------------------------HHHHHHhh-----------
Confidence 22222221
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
..++-+++|||||||.+...| |.++ +||.+++..+..+
T Consensus 503 ---------------------------------~t~NPliLiDEvDKlG~g~qG----DPas-----ALLElLDPEQNan 540 (906)
T KOG2004|consen 503 ---------------------------------KTENPLILIDEVDKLGSGHQG----DPAS-----ALLELLDPEQNAN 540 (906)
T ss_pred ---------------------------------CCCCceEEeehhhhhCCCCCC----ChHH-----HHHHhcChhhccc
Confidence 125779999999999954333 3333 7999998655433
Q ss_pred ---ee--eeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceE
Q psy2392 1062 ---KY--GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 1136 (1165)
Q Consensus 1062 ---k~--~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~ 1136 (1165)
.| .+++-+.+||||+.+- -.-+-|+|+.||.+ ++++.+..+|-..|.. +.|+.|+.+.++-..-.+.
T Consensus 541 FlDHYLdVp~DLSkVLFicTAN~----idtIP~pLlDRMEv-IelsGYv~eEKv~IA~---~yLip~a~~~~gl~~e~v~ 612 (906)
T KOG2004|consen 541 FLDHYLDVPVDLSKVLFICTANV----IDTIPPPLLDRMEV-IELSGYVAEEKVKIAE---RYLIPQALKDCGLKPEQVK 612 (906)
T ss_pred hhhhccccccchhheEEEEeccc----cccCChhhhhhhhe-eeccCccHHHHHHHHH---HhhhhHHHHHcCCCHHhcC
Confidence 33 3788999999999652 22344789999998 5999999999999998 7888888776655555678
Q ss_pred eCHHHHHHHHHHHhccCcCCcee
Q psy2392 1137 FVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1137 ~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
++++|+..|.+ -|+.+.|.+|.
T Consensus 613 is~~al~~lI~-~YcrEaGVRnL 634 (906)
T KOG2004|consen 613 ISDDALLALIE-RYCREAGVRNL 634 (906)
T ss_pred ccHHHHHHHHH-HHHHHHhHHHH
Confidence 89999999987 57778888763
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=4e-17 Score=182.28 Aligned_cols=107 Identities=19% Similarity=0.361 Sum_probs=77.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCC-CCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA-KPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~-~p~dl~pel~gR~ 1095 (1165)
..||+||||||.|....+ .+.. ..+++.|++.+|.. +.++.+|++|.-... ....+.|+|.+||
T Consensus 105 ~~~VL~IDE~~~L~~~~~----~~~~-~~~i~~Ll~~~e~~----------~~~~~vila~~~~~~~~~~~~~p~L~sRf 169 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGE----KDFG-KEAIDTLVKGMEDN----------RNEFVLILAGYSDEMDYFLSLNPGLRSRF 169 (261)
T ss_pred cCCEEEEechhhhccCCc----cchH-HHHHHHHHHHHhcc----------CCCEEEEecCCcchhHHHHhcChHHHhcc
Confidence 468999999999974221 1111 23788899999863 355778888763322 1234679999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+..++|++++.+++.+|++ ..+...+. .++++++..|++....
T Consensus 170 ~~~i~f~~~~~~el~~Il~-----------~~~~~~~~--~l~~~a~~~l~~~~~~ 212 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAE-----------RMVKEREY--KLTEEAKWKLREHLYK 212 (261)
T ss_pred ceEEEECCCCHHHHHHHHH-----------HHHHHcCC--ccCHHHHHHHHHHHHH
Confidence 9999999999999999998 22333344 7899999999876543
No 80
>KOG0737|consensus
Probab=99.72 E-value=1.5e-17 Score=186.39 Aligned_cols=188 Identities=22% Similarity=0.356 Sum_probs=142.9
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
...|.++.-. +.+|.|.+.++..+.+.+..+.++.++++..+--.++.++||+||||||||.+|+++|++.+.+|+.++
T Consensus 81 ~v~p~~I~v~-f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 81 VVPPSEIGVS-FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred ccchhhceee-hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3344444333 369999999999999999999888888865443345799999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
++.++++ |.|++ +.+++-+|..|.+.
T Consensus 160 ~s~lt~K-WfgE~-eKlv~AvFslAsKl---------------------------------------------------- 185 (386)
T KOG0737|consen 160 VSNLTSK-WFGEA-QKLVKAVFSLASKL---------------------------------------------------- 185 (386)
T ss_pred ccccchh-hHHHH-HHHHHHHHhhhhhc----------------------------------------------------
Confidence 9999998 99988 45677777555111
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
T Consensus 186 -------------------------------------------------------------------------------- 185 (386)
T KOG0737|consen 186 -------------------------------------------------------------------------------- 185 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCce---EEEEecCCCCCCCCC
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH---ILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~---ilfI~~gaf~~~~p~ 1085 (1165)
++.||||||||.+...+.+ +..++.+ ++.....+-|-+..|++ +++.+| .+.|.
T Consensus 186 --------~P~iIFIDEvds~L~~R~s-~dHEa~a----------~mK~eFM~~WDGl~s~~~~rVlVlgA----TNRP~ 242 (386)
T KOG0737|consen 186 --------QPSIIFIDEVDSFLGQRRS-TDHEATA----------MMKNEFMALWDGLSSKDSERVLVLGA----TNRPF 242 (386)
T ss_pred --------CcceeehhhHHHHHhhccc-chHHHHH----------HHHHHHHHHhccccCCCCceEEEEeC----CCCCc
Confidence 6789999999999988621 2222211 11222223344444433 555555 36999
Q ss_pred CCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1086 DLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1086 dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+..++++|||-|++..-++.++..+||+
T Consensus 243 DlDeAiiRR~p~rf~V~lP~~~qR~kILk 271 (386)
T KOG0737|consen 243 DLDEAIIRRLPRRFHVGLPDAEQRRKILK 271 (386)
T ss_pred cHHHHHHHhCcceeeeCCCchhhHHHHHH
Confidence 99999999999999999999999999999
No 81
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.70 E-value=2.9e-16 Score=177.87 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=134.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHH
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1165)
.|..++||||||||||.+|+++|++++.+|+.++++++.++ |+|++ +..++++|+.+...+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk-~vGEs-Ek~IR~~F~~A~~~a----------------- 207 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE-NAGEP-GKLIRQRYREAADII----------------- 207 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC-cCCcH-HHHHHHHHHHHHHHh-----------------
Confidence 35899999999999999999999999999999999999885 99999 778999998741000
Q ss_pred HHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhc
Q psy2392 297 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376 (1165)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1165)
T Consensus 208 -------------------------------------------------------------------------------- 207 (413)
T PLN00020 208 -------------------------------------------------------------------------------- 207 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc
Q psy2392 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 456 (1165)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~ 456 (1165)
.....++||||||||.+++.+.+ ....+...-|...||.++
T Consensus 208 --------------------------------------~~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~ 248 (413)
T PLN00020 208 --------------------------------------KKKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIA 248 (413)
T ss_pred --------------------------------------hccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHh
Confidence 00015899999999999988653 223333444556789998
Q ss_pred cCce-eee--ec-eeecCceEEEEEeCCcccCCCCCCchhhhC--CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHH
Q psy2392 457 EGTT-VNT--KY-GIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 530 (1165)
Q Consensus 457 Eg~~-v~~--~~-~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll 530 (1165)
|+-+ |.. -| ..-.+.++.+|++| ++|+.|.|+|++ ||+..+ ..++.++..+||+ .++
T Consensus 249 D~p~~v~l~G~w~~~~~~~~V~VIaTT----Nrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~-----------~~~ 311 (413)
T PLN00020 249 DNPTNVSLGGDWREKEEIPRVPIIVTG----NDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVH-----------GIF 311 (413)
T ss_pred cCCccccccccccccccCCCceEEEeC----CCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHH-----------HHh
Confidence 8732 211 11 11245678888886 799999999995 999864 5799999999994 223
Q ss_pred hhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 531 ATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 531 ~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
+..+ ++.+.+..|++.-.. .+.+-+||=|-+.
T Consensus 312 r~~~----l~~~dv~~Lv~~f~g--q~~Df~GAlrar~ 343 (413)
T PLN00020 312 RDDG----VSREDVVKLVDTFPG--QPLDFFGALRARV 343 (413)
T ss_pred ccCC----CCHHHHHHHHHcCCC--CCchhhhHHHHHH
Confidence 3333 345666666654421 1234577744433
No 82
>KOG0734|consensus
Probab=99.70 E-value=4.1e-17 Score=187.63 Aligned_cols=187 Identities=26% Similarity=0.415 Sum_probs=138.6
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
..|......--++|.|-|+||..+.+.+.. ++-+.-+..++.. -|+++||+||||+|||.|||++|.+.+.||+....
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGK-LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGK-LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCc-CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 344444333346999999999888776642 1111112222221 26899999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
|+|-+. |||-+ ...+++||..+
T Consensus 371 SEFdEm-~VGvG-ArRVRdLF~aA-------------------------------------------------------- 392 (752)
T KOG0734|consen 371 SEFDEM-FVGVG-ARRVRDLFAAA-------------------------------------------------------- 392 (752)
T ss_pred cchhhh-hhccc-HHHHHHHHHHH--------------------------------------------------------
Confidence 999776 99988 66789998773
Q ss_pred HhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHH
Q psy2392 332 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1165)
T Consensus 393 -------------------------------------------------------------------------------- 392 (752)
T KOG0734|consen 393 -------------------------------------------------------------------------------- 392 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch
Q psy2392 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 491 (1165)
Q Consensus 412 ~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p 491 (1165)
..+ .+|||||||||.+..++.... ....+ .--++||--|||-. .++-|+||++++| |.+|+|
T Consensus 393 --k~~--APcIIFIDEiDavG~kR~~~~-~~y~k-qTlNQLLvEmDGF~--------qNeGiIvigATNf----pe~LD~ 454 (752)
T KOG0734|consen 393 --KAR--APCIIFIDEIDAVGGKRNPSD-QHYAK-QTLNQLLVEMDGFK--------QNEGIIVIGATNF----PEALDK 454 (752)
T ss_pred --Hhc--CCeEEEEechhhhcccCCccH-HHHHH-HHHHHHHHHhcCcC--------cCCceEEEeccCC----hhhhhH
Confidence 111 489999999999987654311 11122 23356888888843 4567889999654 899999
Q ss_pred hhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 492 ELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 492 el~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+|. |||+..|..+.++-.-..+||.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILK 481 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHH
Confidence 998 8999999999999999999995
No 83
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=1.3e-16 Score=180.05 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=75.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC-CCCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~-~~p~dl~pel~gR~ 1095 (1165)
..|++||||||.+..... ..+.+. .+|+.|+.+||.. ..++.+|++|.-.. ..-..+.|+|.+||
T Consensus 121 ~~gvL~iDEi~~L~~~~~---~~~~~~-~~~~~Ll~~le~~----------~~~~~vI~a~~~~~~~~~~~~np~L~sR~ 186 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDN---ERDYGQ-EAIEILLQVMENQ----------RDDLVVILAGYKDRMDSFFESNPGFSSRV 186 (284)
T ss_pred cCcEEEEechhhhccCCC---ccchHH-HHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhhCHHHHhhC
Confidence 468999999999975421 122233 4788999999853 25677888886210 00012479999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+..++|++|+.+|+..|+. .++++ .+. .++++++..++...
T Consensus 187 ~~~i~fp~l~~edl~~I~~----~~l~~-------~~~--~l~~~a~~~L~~~l 227 (284)
T TIGR02880 187 AHHVDFPDYSEAELLVIAG----LMLKE-------QQY--RFSAEAEEAFADYI 227 (284)
T ss_pred CcEEEeCCcCHHHHHHHHH----HHHHH-------hcc--ccCHHHHHHHHHHH
Confidence 9999999999999999998 33333 333 57899998887753
No 84
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=185.70 Aligned_cols=242 Identities=18% Similarity=0.300 Sum_probs=157.6
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|+|++.+++.+.+++..++.++.+....+.. +|.++||+||||||||++|+++|+.++.+|+.+.++++... |+|
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k-~~g 221 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK-YLG 221 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH-hcc
Confidence 3589999999999999998776666555444322 46899999999999999999999999999999998887654 776
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ ...++++|..+
T Consensus 222 e~-~~~lr~lf~~A------------------------------------------------------------------ 234 (398)
T PTZ00454 222 EG-PRMVRDVFRLA------------------------------------------------------------------ 234 (398)
T ss_pred hh-HHHHHHHHHHH------------------------------------------------------------------
Confidence 65 33344444331
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
. ...++
T Consensus 235 ------------------------------------------------------------------------~--~~~P~ 240 (398)
T PTZ00454 235 ------------------------------------------------------------------------R--ENAPS 240 (398)
T ss_pred ------------------------------------------------------------------------H--hcCCe
Confidence 0 01478
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.+...+.+.+ +.+.....+...||..++|- -...++.+|+++ +.|+.++|+|+ |||+
T Consensus 241 ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~--------~~~~~v~VI~aT----N~~d~LDpAllR~GRfd 308 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGRLD 308 (398)
T ss_pred EEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc--------CCCCCEEEEEec----CCchhCCHHHcCCCccc
Confidence 999999999987764322 22211112223445555542 124567788874 57899999987 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..|+|+.++.++...|++ .+ +...++.- +-.+..++.... ++-++-|..++........
T Consensus 309 ~~I~~~~P~~~~R~~Il~----~~-------~~~~~l~~---dvd~~~la~~t~-------g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 309 RKIEFPLPDRRQKRLIFQ----TI-------TSKMNLSE---EVDLEDFVSRPE-------KISAADIAAICQEAGMQAV 367 (398)
T ss_pred EEEEeCCcCHHHHHHHHH----HH-------HhcCCCCc---ccCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999984 11 12222221 112455665543 3444556666655543222
Q ss_pred cccCCCeeEEcccccccccccCcc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLSI 602 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~~ 602 (1165)
.+ ....|+.+.+.+.+...+.
T Consensus 368 r~---~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 368 RK---NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred Hc---CCCccCHHHHHHHHHHHHh
Confidence 11 1135666666666555443
No 85
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3e-16 Score=190.51 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=143.5
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCC--CCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGP--LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~--~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
..++.|.+.++..+.+++..+.+++.+... +++ +.++||+||||||||++|+++|.+++.+|+.++++++.+. |
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~---~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk-~ 316 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP---PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK-W 316 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC---CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc-c
Confidence 357889999999999999988777765442 333 4799999999999999999999999999999999999875 9
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
+|++ +..++.+|..+
T Consensus 317 vGes-ek~ir~~F~~A---------------------------------------------------------------- 331 (494)
T COG0464 317 VGES-EKNIRELFEKA---------------------------------------------------------------- 331 (494)
T ss_pred cchH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 9998 66688888763
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
.. ..
T Consensus 332 --------------------------------------------------------------------------~~--~~ 335 (494)
T COG0464 332 --------------------------------------------------------------------------RK--LA 335 (494)
T ss_pred --------------------------------------------------------------------------Hc--CC
Confidence 00 14
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RF 497 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~ 497 (1165)
++||||||||++.+.+..++ +.+...+.+.||..++|-. ..+++++|++. +.|+.+.|+++. ||
T Consensus 336 p~iiFiDEiDs~~~~r~~~~--~~~~~r~~~~lL~~~d~~e--------~~~~v~vi~aT----N~p~~ld~a~lR~gRf 401 (494)
T COG0464 336 PSIIFIDEIDSLASGRGPSE--DGSGRRVVGQLLTELDGIE--------KAEGVLVIAAT----NRPDDLDPALLRPGRF 401 (494)
T ss_pred CcEEEEEchhhhhccCCCCC--chHHHHHHHHHHHHhcCCC--------ccCceEEEecC----CCccccCHhhcccCcc
Confidence 88999999999998876522 2222457778999998632 45667788884 689999999997 99
Q ss_pred CeeEecCCCCHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~ 516 (1165)
+.++.+.+++..+..+|++
T Consensus 402 d~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 402 DRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred ceEeecCCCCHHHHHHHHH
Confidence 9999999999999999995
No 86
>KOG0737|consensus
Probab=99.68 E-value=1.3e-16 Score=179.05 Aligned_cols=189 Identities=24% Similarity=0.422 Sum_probs=144.1
Q ss_pred HHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 173 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 173 ~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.|.++.... .+|.|.+..+..+.+.+..+.++++++...+-..++.++||+||||||||.+|+++|++.+.+|+-+.++
T Consensus 83 ~p~~I~v~f-~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 83 PPSEIGVSF-DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred chhhceeeh-hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 344444333 3899999999999999999999999987555445568999999999999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHH
Q psy2392 253 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 332 (1165)
Q Consensus 253 ~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1165)
.++++ |.|++ ++.++.+|-.+
T Consensus 162 ~lt~K-WfgE~-eKlv~AvFslA--------------------------------------------------------- 182 (386)
T KOG0737|consen 162 NLTSK-WFGEA-QKLVKAVFSLA--------------------------------------------------------- 182 (386)
T ss_pred ccchh-hHHHH-HHHHHHHHhhh---------------------------------------------------------
Confidence 99986 88777 45555555432
Q ss_pred hhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHH
Q psy2392 333 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 412 (1165)
Q Consensus 333 ~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1165)
.|+
T Consensus 183 --------------------------------------------------------------------sKl--------- 185 (386)
T KOG0737|consen 183 --------------------------------------------------------------------SKL--------- 185 (386)
T ss_pred --------------------------------------------------------------------hhc---------
Confidence 111
Q ss_pred HHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchh
Q psy2392 413 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 492 (1165)
Q Consensus 413 a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pe 492 (1165)
+++||||||||.+...+.. +..++ ..-..+++..+-+|-.-+ +...|++.+| +++|.|+..+
T Consensus 186 ------~P~iIFIDEvds~L~~R~s-~dHEa-~a~mK~eFM~~WDGl~s~------~~~rVlVlgA----TNRP~DlDeA 247 (386)
T KOG0737|consen 186 ------QPSIIFIDEVDSFLGQRRS-TDHEA-TAMMKNEFMALWDGLSSK------DSERVLVLGA----TNRPFDLDEA 247 (386)
T ss_pred ------CcceeehhhHHHHHhhccc-chHHH-HHHHHHHHHHHhccccCC------CCceEEEEeC----CCCCccHHHH
Confidence 6899999999999977632 21222 122444566666763311 1123666666 4799999999
Q ss_pred hhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 493 LQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 493 l~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+++|||.++.+.-++.....+||+
T Consensus 248 iiRR~p~rf~V~lP~~~qR~kILk 271 (386)
T KOG0737|consen 248 IIRRLPRRFHVGLPDAEQRRKILK 271 (386)
T ss_pred HHHhCcceeeeCCCchhhHHHHHH
Confidence 999999999999999999999995
No 87
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.68 E-value=3.9e-16 Score=183.40 Aligned_cols=178 Identities=26% Similarity=0.434 Sum_probs=131.3
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.+.+.+..++....+...... .+|+++||+||||||||++|+++|+.++.+|+.+.++++.++ |+|
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k-~~g 221 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK-YLG 221 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH-hcc
Confidence 478999999999999999876554433332211 136899999999999999999999999999999999888776 888
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++. ..++++|..|..
T Consensus 222 e~~-~~lr~lf~~A~~---------------------------------------------------------------- 236 (398)
T PTZ00454 222 EGP-RMVRDVFRLARE---------------------------------------------------------------- 236 (398)
T ss_pred hhH-HHHHHHHHHHHh----------------------------------------------------------------
Confidence 763 446666544310
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
.+++
T Consensus 237 ----------------------------------------------------------------------------~~P~ 240 (398)
T PTZ00454 237 ----------------------------------------------------------------------------NAPS 240 (398)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 1578
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhcccc---ccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--cc
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL---VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 1094 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~---~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR 1094 (1165)
||||||||.|+..+.... +..+ ..+|+.++.+ ++| .-.+.++.+|+++ +.|+.+.|+|+ ||
T Consensus 241 ILfIDEID~i~~~r~~~~-~~~d-~~~~r~l~~LL~~ld~--------~~~~~~v~VI~aT----N~~d~LDpAllR~GR 306 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQ-TGAD-REVQRILLELLNQMDG--------FDQTTNVKVIMAT----NRADTLDPALLRPGR 306 (398)
T ss_pred EEEEECHhhhcccccccc-CCcc-HHHHHHHHHHHHHhhc--------cCCCCCEEEEEec----CCchhCCHHHcCCCc
Confidence 999999999987653211 1111 2355555444 443 2234578888876 47899999998 59
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|...++|+.++.++...|++
T Consensus 307 fd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHH
Confidence 99999999999999988887
No 88
>KOG0740|consensus
Probab=99.67 E-value=2.1e-16 Score=183.11 Aligned_cols=206 Identities=26% Similarity=0.356 Sum_probs=163.2
Q ss_pred HHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 776 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 776 ~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
....|+++.|.+.++..+.+.+.++..|..++.+++.+ ++++||+||||+|||.|++++|.+.+..|+.+.++.++++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p--~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP--VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccc--cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 34567899999999999999999887777777777764 5899999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|+|+. +.+++.+|..|..
T Consensus 226 -~~Ge~-eK~vralf~vAr~------------------------------------------------------------ 243 (428)
T KOG0740|consen 226 -YVGES-EKLVRALFKVARS------------------------------------------------------------ 243 (428)
T ss_pred -ccChH-HHHHHHHHHHHHh------------------------------------------------------------
Confidence 99999 6789999877611
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 244 -------------------------------------------------------------------------------- 243 (428)
T KOG0740|consen 244 -------------------------------------------------------------------------------- 243 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~ 1095 (1165)
.+++||||||||++...+ +.+..+.++-=.-..|++..=. ++ ..-++|++|++. +.|+.+.-.+..||
T Consensus 244 ~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~---~s----~~~drvlvigaT----N~P~e~Dea~~Rrf 311 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGK---NS----APDDRVLVIGAT----NRPWELDEAARRRF 311 (428)
T ss_pred cCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccc---cC----CCCCeEEEEecC----CCchHHHHHHHHHh
Confidence 178999999999999887 3344455544333444444321 11 223589999986 59999999999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.-|+.++.++.+.-..+++ .+|+.++. .+++..++.||+.--
T Consensus 312 ~kr~yiplPd~etr~~~~~-----------~ll~~~~~--~l~~~d~~~l~~~Te 353 (428)
T KOG0740|consen 312 VKRLYIPLPDYETRSLLWK-----------QLLKEQPN--GLSDLDISLLAKVTE 353 (428)
T ss_pred hceeeecCCCHHHHHHHHH-----------HHHHhCCC--CccHHHHHHHHHHhc
Confidence 9999999999999998888 44544444 456777888877543
No 89
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.67 E-value=3e-16 Score=188.10 Aligned_cols=212 Identities=20% Similarity=0.304 Sum_probs=142.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|++.+|+.+............ .-+.. .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~-~~gl~---~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~-~~vGe 302 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQAS-NYGLP---TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG-GIVGE 302 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHH-hcCCC---CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc-cccCh
Confidence 4789999999888764332100110 11121 3589999999999999999999999999999999998876 58988
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 303 s-e~~l~~~f~~A------------------------------------------------------------------- 314 (489)
T CHL00195 303 S-ESRMRQMIRIA------------------------------------------------------------------- 314 (489)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 7 34455555441
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 315 -----------------------------------------------------------------------~--~~~P~I 321 (489)
T CHL00195 315 -----------------------------------------------------------------------E--ALSPCI 321 (489)
T ss_pred -----------------------------------------------------------------------H--hcCCcE
Confidence 0 015899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||++.......+.... ...+...||..+++ ...++++|||+ ++|..+.|+|+ |||+..
T Consensus 322 L~IDEID~~~~~~~~~~d~~~-~~rvl~~lL~~l~~----------~~~~V~vIaTT----N~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGT-TNRVLATFITWLSE----------KKSPVFVVATA----NNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred EEehhhhhhhccccCCCCchH-HHHHHHHHHHHHhc----------CCCceEEEEec----CChhhCCHHHhCCCcCCeE
Confidence 999999999875433111111 12344556666653 24567788884 68899999997 699999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+.++.++.++..+|++ ..+.. .+.. ...+..++.|++.+.. +-.+-|..++....
T Consensus 387 i~v~lP~~~eR~~Il~----~~l~~-------~~~~-~~~~~dl~~La~~T~G-------fSGAdI~~lv~eA~ 441 (489)
T CHL00195 387 FFLDLPSLEEREKIFK----IHLQK-------FRPK-SWKKYDIKKLSKLSNK-------FSGAEIEQSIIEAM 441 (489)
T ss_pred EEeCCcCHHHHHHHHH----HHHhh-------cCCC-cccccCHHHHHhhcCC-------CCHHHHHHHHHHHH
Confidence 9999999999999994 22221 1111 1224457788887743 34445655554443
No 90
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.66 E-value=6.1e-16 Score=187.72 Aligned_cols=177 Identities=28% Similarity=0.448 Sum_probs=129.1
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
+|+|+++++..+.+.+.. ++.+......+. ..|.++||+||||||||++|+++|..++.+|+.++++++.+. |+|..
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~~ 132 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVG 132 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH-Hhccc
Confidence 788999999988876653 232222111111 135789999999999999999999999999999999887653 55554
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEE
Q psy2392 264 VDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEI 343 (1165)
Q Consensus 264 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i 343 (1165)
...++++|..+
T Consensus 133 -~~~l~~~f~~a-------------------------------------------------------------------- 143 (495)
T TIGR01241 133 -ASRVRDLFEQA-------------------------------------------------------------------- 143 (495)
T ss_pred -HHHHHHHHHHH--------------------------------------------------------------------
Confidence 23344444331
Q ss_pred EEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEE
Q psy2392 344 EIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGII 423 (1165)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ii 423 (1165)
.. ..++||
T Consensus 144 ----------------------------------------------------------------------~~--~~p~Il 151 (495)
T TIGR01241 144 ----------------------------------------------------------------------KK--NAPCII 151 (495)
T ss_pred ----------------------------------------------------------------------Hh--cCCCEE
Confidence 11 147899
Q ss_pred EEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 424 FLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 424 fiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||||||.++.+++... +.+.....+.+.||..++|-. ...++++|+++ +.|..++|+|+ |||+..
T Consensus 152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~--------~~~~v~vI~aT----n~~~~ld~al~r~gRfd~~ 219 (495)
T TIGR01241 152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------TNTGVIVIAAT----NRPDVLDPALLRPGRFDRQ 219 (495)
T ss_pred EEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc--------CCCCeEEEEec----CChhhcCHHHhcCCcceEE
Confidence 9999999998766522 223344567778888888632 34568888885 67889999998 599999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
|.+..++.++..+|++
T Consensus 220 i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 220 VVVDLPDIKGREEILK 235 (495)
T ss_pred EEcCCCCHHHHHHHHH
Confidence 9999999999999994
No 91
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.66 E-value=7.1e-16 Score=184.90 Aligned_cols=170 Identities=22% Similarity=0.328 Sum_probs=124.7
Q ss_pred hcccchHHHHHHHHHHHHh---HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRN---RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~---~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gy 857 (1165)
++|.|++.+|+.+...... ..+..|+. .|+++||+||||||||++|+++|+.++.||+.++++.+.+. |
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~-------~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~-~ 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLP-------TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG-I 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCC-------CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc-c
Confidence 5889999999888764432 11222322 26899999999999999999999999999999999998876 9
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
+|++. ..++++|..|..
T Consensus 300 vGese-~~l~~~f~~A~~-------------------------------------------------------------- 316 (489)
T CHL00195 300 VGESE-SRMRQMIRIAEA-------------------------------------------------------------- 316 (489)
T ss_pred cChHH-HHHHHHHHHHHh--------------------------------------------------------------
Confidence 99874 456776654411
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.+
T Consensus 317 ------------------------------------------------------------------------------~~ 318 (489)
T CHL00195 317 ------------------------------------------------------------------------------LS 318 (489)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 15
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~ 1095 (1165)
++||||||||++.....+.+.+..+ .-+...||..+.+ .+.++++||+. ++|+.+.|+|+ |||
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~-~rvl~~lL~~l~~----------~~~~V~vIaTT----N~~~~Ld~allR~GRF 383 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTT-NRVLATFITWLSE----------KKSPVFVVATA----NNIDLLPLEILRKGRF 383 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHH-HHHHHHHHHHHhc----------CCCceEEEEec----CChhhCCHHHhCCCcC
Confidence 7899999999998753321111111 1233445554442 24567788775 58999999997 599
Q ss_pred CeEEEcCCCCHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~ 1114 (1165)
...+.++.++.++..+|++
T Consensus 384 D~~i~v~lP~~~eR~~Il~ 402 (489)
T CHL00195 384 DEIFFLDLPSLEEREKIFK 402 (489)
T ss_pred CeEEEeCCcCHHHHHHHHH
Confidence 9999999999999999998
No 92
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.66 E-value=4.1e-16 Score=186.76 Aligned_cols=180 Identities=21% Similarity=0.375 Sum_probs=128.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCC----------ceEEecc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP----------FIKIEAT 252 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~----------~i~ld~s 252 (1165)
++|.|++..++.+..++..++.++.+....+.. +|.++||+||||||||++|+++|+.++.+ |+.+..+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 478999999999999998777776655433222 35899999999999999999999998654 3444444
Q ss_pred ccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHH
Q psy2392 253 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 332 (1165)
Q Consensus 253 ~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1165)
++.++ |+|.. +..++.+|..+
T Consensus 261 eLl~k-yvGet-e~~ir~iF~~A--------------------------------------------------------- 281 (512)
T TIGR03689 261 ELLNK-YVGET-ERQIRLIFQRA--------------------------------------------------------- 281 (512)
T ss_pred hhccc-ccchH-HHHHHHHHHHH---------------------------------------------------------
Confidence 44442 55554 23344444331
Q ss_pred hhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHH
Q psy2392 333 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 412 (1165)
Q Consensus 333 ~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1165)
T Consensus 282 -------------------------------------------------------------------------------- 281 (512)
T TIGR03689 282 -------------------------------------------------------------------------------- 281 (512)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhh--hccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 413 AINN--VEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 413 a~~~--~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
... ...++||||||||.+...+..+.+.+..+ .+...||..++|- ....++++|+++ +.|..++
T Consensus 282 -r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~-~il~~LL~~LDgl--------~~~~~ViVI~AT----N~~d~LD 347 (512)
T TIGR03689 282 -REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVET-TVVPQLLSELDGV--------ESLDNVIVIGAS----NREDMID 347 (512)
T ss_pred -HHHhhcCCCceEEEehhhhhhcccCCCccchHHH-HHHHHHHHHhccc--------ccCCceEEEecc----CChhhCC
Confidence 000 01478999999999997764422333322 3445788888873 234678888884 6788999
Q ss_pred hhhhC--CCCeeEecCCCCHHHHHHHHh
Q psy2392 491 PELQG--RFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 491 pel~~--R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+|++ ||+..|+|.+++.++..+|++
T Consensus 348 pALlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 348 PAILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred HhhcCccccceEEEeCCCCHHHHHHHHH
Confidence 99984 999999999999999999995
No 93
>KOG0652|consensus
Probab=99.66 E-value=2.2e-16 Score=168.21 Aligned_cols=177 Identities=27% Similarity=0.448 Sum_probs=139.7
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.+..++.+.+++..++.+..-+..++.. +|+++|+|||||+|||.+|++.|...+..|..+-+..+++. |+|.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~-pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM-fIGd 248 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIR-PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGD 248 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCC-CCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh-hhcc
Confidence 489999999999999998877766555544332 46999999999999999999999999999999998888875 8888
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..++++.|..+
T Consensus 249 G-AkLVRDAFaLA------------------------------------------------------------------- 260 (424)
T KOG0652|consen 249 G-AKLVRDAFALA------------------------------------------------------------------- 260 (424)
T ss_pred h-HHHHHHHHHHh-------------------------------------------------------------------
Confidence 7 56677777552
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 261 -----------------------------------------------------------------------KE--kaP~I 267 (424)
T KOG0652|consen 261 -----------------------------------------------------------------------KE--KAPTI 267 (424)
T ss_pred -----------------------------------------------------------------------hc--cCCeE
Confidence 11 13889
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCC
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 497 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~ 497 (1165)
|||||+|.|.+++.++. ......||+.+|.++ +|- -.++.|-+||++ ++-.-+.|+|+ ||+
T Consensus 268 IFIDElDAIGtKRfDSe--k~GDREVQRTMLELLNQLDGF--------ss~~~vKviAAT----NRvDiLDPALlRSGRL 333 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDSE--KAGDREVQRTMLELLNQLDGF--------SSDDRVKVIAAT----NRVDILDPALLRSGRL 333 (424)
T ss_pred EEEechhhhcccccccc--ccccHHHHHHHHHHHHhhcCC--------CCccceEEEeec----ccccccCHHHhhcccc
Confidence 99999999999877622 122335999877765 443 345667788884 45566899998 899
Q ss_pred CeeEecCCCCHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~ 516 (1165)
+..|+|+-++++...+|++
T Consensus 334 DRKIEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 334 DRKIEFPHPNEEARARILQ 352 (424)
T ss_pred cccccCCCCChHHHHHHHH
Confidence 9999999999999999995
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=8.9e-16 Score=181.52 Aligned_cols=124 Identities=17% Similarity=0.297 Sum_probs=97.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .|+.||+.+|. ...|++||.++ +.+..+.|.+++|+.
T Consensus 121 ~~KV~IIDEah~Ls~~-------------A~NALLKtLEE----------Pp~~viFILaT----te~~kI~~TI~SRCq 173 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ-------------SFNALLKTLEE----------PPAHIVFILAT----TEFHKIPETILSRCQ 173 (484)
T ss_pred CCEEEEEechhhcCHH-------------HHHHHHHHhhc----------CCCceEEEeec----CChhhccHHHHhhhh
Confidence 4679999999999865 67799999986 24678888764 468889999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.|. ..+..+|+ .++++++..|++.+ +++.|...+++|+++.
T Consensus 174 ~-~~f~~ls~~~i~~~L~-----------~i~~~Egi--~~e~eAL~~Ia~~S--------~Gd~RdAL~lLeq~i~--- 228 (484)
T PRK14956 174 D-FIFKKVPLSVLQDYSE-----------KLCKIENV--QYDQEGLFWIAKKG--------DGSVRDMLSFMEQAIV--- 228 (484)
T ss_pred e-eeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CChHHHHHHHHHHHHH---
Confidence 5 5999999999988873 23445665 78999999999988 7899999999999863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+. .. .||.+.|.+.++
T Consensus 229 ~~-~~---~it~~~V~~~lg 244 (484)
T PRK14956 229 FT-DS---KLTGVKIRKMIG 244 (484)
T ss_pred hC-CC---CcCHHHHHHHhC
Confidence 21 11 377777766553
No 95
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.66 E-value=9.3e-16 Score=180.55 Aligned_cols=178 Identities=26% Similarity=0.450 Sum_probs=131.4
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|+|.+.+++.+.+.+..+..+..+....+.. +|.++||+||||||||++|+++|+.++.+|+.++++++... |+|
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~-~~g 207 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIG 207 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh-hcc
Confidence 3588999999999999998776665554433322 35899999999999999999999999999999999988764 777
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ ...++.+|..+
T Consensus 208 ~~-~~~i~~~f~~a------------------------------------------------------------------ 220 (389)
T PRK03992 208 EG-ARLVRELFELA------------------------------------------------------------------ 220 (389)
T ss_pred ch-HHHHHHHHHHH------------------------------------------------------------------
Confidence 65 33455554431
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 221 ------------------------------------------------------------------------~~--~~p~ 226 (389)
T PRK03992 221 ------------------------------------------------------------------------RE--KAPS 226 (389)
T ss_pred ------------------------------------------------------------------------Hh--cCCe
Confidence 00 1478
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
||||||||.+...+.+.+. .....+|+.++.++ +|. ....++.+|+++ +.|+.+.|+|+ ||
T Consensus 227 IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~--------~~~~~v~VI~aT----n~~~~ld~allRpgR 292 (389)
T PRK03992 227 IIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGF--------DPRGNVKIIAAT----NRIDILDPAILRPGR 292 (389)
T ss_pred EEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhcccc--------CCCCCEEEEEec----CChhhCCHHHcCCcc
Confidence 9999999999877554221 11223555555544 331 134578888885 56788999998 59
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+..|.|++++.++..+|++
T Consensus 293 fd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred CceEEEECCCCHHHHHHHHH
Confidence 99999999999999999994
No 96
>KOG0652|consensus
Probab=99.66 E-value=1.8e-16 Score=168.97 Aligned_cols=180 Identities=27% Similarity=0.428 Sum_probs=138.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.+|.|.+..++++.+++..+.....-+..+.. .+|+++|+|||||+|||.+|++.|...+..|..+-++.+++. |+|.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM-fIGd 248 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGD 248 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh-hhcc
Confidence 68999999999999999765433322222211 237999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..++++.|..|...
T Consensus 249 G-AkLVRDAFaLAKEk---------------------------------------------------------------- 263 (424)
T KOG0652|consen 249 G-AKLVRDAFALAKEK---------------------------------------------------------------- 263 (424)
T ss_pred h-HHHHHHHHHHhhcc----------------------------------------------------------------
Confidence 8 46788888766111
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.+.|
T Consensus 264 ----------------------------------------------------------------------------aP~I 267 (424)
T KOG0652|consen 264 ----------------------------------------------------------------------------APTI 267 (424)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 4789
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||+|.|.+.+..+ -.....-|||.+|.++-.- -|--.++.|-+|+++. +..-|.|+|+ ||+.-.
T Consensus 268 IFIDElDAIGtKRfDS--ek~GDREVQRTMLELLNQL-----DGFss~~~vKviAATN----RvDiLDPALlRSGRLDRK 336 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDS--EKAGDREVQRTMLELLNQL-----DGFSSDDRVKVIAATN----RVDILDPALLRSGRLDRK 336 (424)
T ss_pred EEEechhhhccccccc--cccccHHHHHHHHHHHHhh-----cCCCCccceEEEeecc----cccccCHHHhhccccccc
Confidence 9999999999886431 1122334999888765321 1344556777888853 4455779998 899999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
++|+-++++...+||.
T Consensus 337 IEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 337 IEFPHPNEEARARILQ 352 (424)
T ss_pred ccCCCCChHHHHHHHH
Confidence 9999999999999998
No 97
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.66 E-value=6.4e-16 Score=185.13 Aligned_cols=182 Identities=21% Similarity=0.378 Sum_probs=130.6
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCC----------eEEEecC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP----------FIKIEAT 850 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~----------fi~l~~s 850 (1165)
++|+|++..++.+..++..++....+...... .+|+++|||||||||||++|+++|+.++.+ |+.+..+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 67999999999999999876554433322111 126899999999999999999999998654 5566666
Q ss_pred CcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHh
Q psy2392 851 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 930 (1165)
Q Consensus 851 e~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 930 (1165)
++.++ |+|+. +..++.+|..+...
T Consensus 261 eLl~k-yvGet-e~~ir~iF~~Ar~~------------------------------------------------------ 284 (512)
T TIGR03689 261 ELLNK-YVGET-ERQIRLIFQRAREK------------------------------------------------------ 284 (512)
T ss_pred hhccc-ccchH-HHHHHHHHHHHHHH------------------------------------------------------
Confidence 76666 77765 34456665444111
Q ss_pred hccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHH
Q psy2392 931 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 1010 (1165)
Q Consensus 931 l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~ 1010 (1165)
T Consensus 285 -------------------------------------------------------------------------------- 284 (512)
T TIGR03689 285 -------------------------------------------------------------------------------- 284 (512)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchh
Q psy2392 1011 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 1090 (1165)
Q Consensus 1011 a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pe 1090 (1165)
+ ....+.||||||||.|+..++.+.+++..+ .+-..||..++| ...++++++|+++ +.|+.|.|+
T Consensus 285 a--~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~-~il~~LL~~LDg--------l~~~~~ViVI~AT----N~~d~LDpA 349 (512)
T TIGR03689 285 A--SDGRPVIVFFDEMDSIFRTRGSGVSSDVET-TVVPQLLSELDG--------VESLDNVIVIGAS----NREDMIDPA 349 (512)
T ss_pred h--hcCCCceEEEehhhhhhcccCCCccchHHH-HHHHHHHHHhcc--------cccCCceEEEecc----CChhhCCHh
Confidence 0 001467999999999997754322233322 133567777775 2345688888886 578899999
Q ss_pred hhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1091 LQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1091 l~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|++ ||+..++|++++.++..+|++
T Consensus 350 LlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 350 ILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred hcCccccceEEEeCCCCHHHHHHHHH
Confidence 985 999999999999999999998
No 98
>KOG0726|consensus
Probab=99.65 E-value=8e-17 Score=174.00 Aligned_cols=180 Identities=22% Similarity=0.385 Sum_probs=136.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.+|.|.+..+.+|.+++..++....+..... ..+|++++|||+||+|||.||+++|+.....|+++-+|++.++ |.|+
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGd 262 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD 262 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH-Hhcc
Confidence 6899999999999999986543332222111 1137999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
++ .++|++|+.|..+
T Consensus 263 Gp-klvRqlF~vA~e~---------------------------------------------------------------- 277 (440)
T KOG0726|consen 263 GP-KLVRELFRVAEEH---------------------------------------------------------------- 277 (440)
T ss_pred ch-HHHHHHHHHHHhc----------------------------------------------------------------
Confidence 95 6899999877211
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 278 ----------------------------------------------------------------------------apSI 281 (440)
T KOG0726|consen 278 ----------------------------------------------------------------------------APSI 281 (440)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 4679
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||||.|.+.+... ++...+| +||.+|.++-.- -|--+...+-+|.++ ++-..|.|+|. ||+.-.
T Consensus 282 vFiDEIdAiGtKRyds-~SggerE-iQrtmLELLNQl-----dGFdsrgDvKvimAT----nrie~LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 282 VFIDEIDAIGTKRYDS-NSGGERE-IQRTMLELLNQL-----DGFDSRGDVKVIMAT----NRIETLDPALIRPGRIDRK 350 (440)
T ss_pred EEeehhhhhccccccC-CCccHHH-HHHHHHHHHHhc-----cCccccCCeEEEEec----ccccccCHhhcCCCccccc
Confidence 9999999999986532 2222344 999888765421 022223345566665 46678889887 799999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
++|.-+++.--.+|++
T Consensus 351 Ief~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 351 IEFPLPDEKTKKKIFQ 366 (440)
T ss_pred cccCCCchhhhceeEE
Confidence 9999998888877775
No 99
>KOG0726|consensus
Probab=99.65 E-value=1.2e-16 Score=172.65 Aligned_cols=180 Identities=21% Similarity=0.388 Sum_probs=141.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
.+|.|.+..+..|.+++..++.++.+....+.. +|++++|||+||+|||.||+++|+.....|+++-.|++.++ |.|.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGik-pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGd 262 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIK-PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD 262 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC-CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH-Hhcc
Confidence 488899999999999999887777665544332 46899999999999999999999999999999999999987 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..+++.+|+.+
T Consensus 263 G-pklvRqlF~vA------------------------------------------------------------------- 274 (440)
T KOG0726|consen 263 G-PKLVRELFRVA------------------------------------------------------------------- 274 (440)
T ss_pred c-hHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 67788888763
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
-.+ .++|
T Consensus 275 -----------------------------------------------------------------------~e~--apSI 281 (440)
T KOG0726|consen 275 -----------------------------------------------------------------------EEH--APSI 281 (440)
T ss_pred -----------------------------------------------------------------------Hhc--CCce
Confidence 011 3789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||.+.+++.+++++. . ..+|+.+|.++-.- -|--....+-+|+++ ++-+.|+|+|. ||++..
T Consensus 282 vFiDEIdAiGtKRyds~Sgg-e-rEiQrtmLELLNQl-----dGFdsrgDvKvimAT----nrie~LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 282 VFIDEIDAIGTKRYDSNSGG-E-REIQRTMLELLNQL-----DGFDSRGDVKVIMAT----NRIETLDPALIRPGRIDRK 350 (440)
T ss_pred EEeehhhhhccccccCCCcc-H-HHHHHHHHHHHHhc-----cCccccCCeEEEEec----ccccccCHhhcCCCccccc
Confidence 99999999999988744321 2 24888887766321 011122345567763 56788999998 899999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
|+|..+++..-.+|++
T Consensus 351 Ief~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 351 IEFPLPDEKTKKKIFQ 366 (440)
T ss_pred cccCCCchhhhceeEE
Confidence 9999999999888875
No 100
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.64 E-value=9.2e-16 Score=180.59 Aligned_cols=182 Identities=25% Similarity=0.424 Sum_probs=133.6
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
.+++|+|.+..++.+.+.+..++....+...... .+|.++||+||||||||++|+++|+.++.+|+.++++++.+. |+
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~-~~ 206 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FI 206 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh-hc
Confidence 3468999999999999998766544433322211 126899999999999999999999999999999999998876 88
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|.+ ...++++|..+..
T Consensus 207 g~~-~~~i~~~f~~a~~--------------------------------------------------------------- 222 (389)
T PRK03992 207 GEG-ARLVRELFELARE--------------------------------------------------------------- 222 (389)
T ss_pred cch-HHHHHHHHHHHHh---------------------------------------------------------------
Confidence 876 3456666544410
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.++
T Consensus 223 -----------------------------------------------------------------------------~~p 225 (389)
T PRK03992 223 -----------------------------------------------------------------------------KAP 225 (389)
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
+||||||||.|+..+...+ ......+|+.|+.++..-. |.....++.+|++++ .|+.+.|.|+ |||.
T Consensus 226 ~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL~~ld-----~~~~~~~v~VI~aTn----~~~~ld~allRpgRfd 294 (389)
T PRK03992 226 SIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAEMD-----GFDPRGNVKIIAATN----RIDILDPAILRPGRFD 294 (389)
T ss_pred eEEEEechhhhhcccccCC--CCccHHHHHHHHHHHHhcc-----ccCCCCCEEEEEecC----ChhhCCHHHcCCccCc
Confidence 8999999999987654321 1112236776666553210 122345788888864 6778889998 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|++++.++..+||+
T Consensus 295 ~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 295 RIIEVPLPDEEGRLEILK 312 (389)
T ss_pred eEEEECCCCHHHHHHHHH
Confidence 999999999999999998
No 101
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.8e-15 Score=164.46 Aligned_cols=191 Identities=22% Similarity=0.379 Sum_probs=142.1
Q ss_pred HHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 766 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 766 ~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.+...||+.| ++.+||+++++.+...+.....+- ..+.|+||+||||.||||||..+|++++.++-
T Consensus 16 ~e~~lRP~~l-----~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 16 IERSLRPKTL-----DEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred hhcccCcccH-----HHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 3446788777 778899999999999987652221 12589999999999999999999999999887
Q ss_pred EEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 846 KIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 846 ~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
..+++-+-.+ +.+. . +| .
T Consensus 82 ~tsGp~leK~-------gDla-a-------------------------------iL-t---------------------- 99 (332)
T COG2255 82 ITSGPALEKP-------GDLA-A-------------------------------IL-T---------------------- 99 (332)
T ss_pred ecccccccCh-------hhHH-H-------------------------------HH-h----------------------
Confidence 7666554333 1111 0 01 0
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 100 -------------------------------------------------------------------------------- 99 (332)
T COG2255 100 -------------------------------------------------------------------------------- 99 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeee--------eeccCceEEEEecC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASG 1077 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~--------~~~~t~~ilfI~~g 1077 (1165)
..+.+-|+||||||++... |-.-|.|.||+..+..-. ..++-.+..+|+|+
T Consensus 100 --------~Le~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 100 --------NLEEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred --------cCCcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 1124559999999999987 666899999987765433 35666666677665
Q ss_pred CCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1078 AFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1078 af~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. +.--+..+|..||.+...|+-++.+||.+|+... ..+| ++.+++++..+||+.|-
T Consensus 159 T----r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~--------a~~l-----~i~i~~~~a~eIA~rSR 214 (332)
T COG2255 159 T----RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRS--------AKIL-----GIEIDEEAALEIARRSR 214 (332)
T ss_pred c----ccccccchhHHhcCCeeeeecCCHHHHHHHHHHH--------HHHh-----CCCCChHHHHHHHHhcc
Confidence 3 5666778999999999999999999999999822 2232 34788999999998764
No 102
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=9e-16 Score=181.45 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=78.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|.+... .|+.||+.+|.. ..|+.||.++ +.|..+.|.+++||-.
T Consensus 122 ~KV~IIDEah~Ls~~-------------A~NALLKtLEEP----------p~~viFILaT----te~~kI~~TI~SRCq~ 174 (484)
T PRK14956 122 YKVYIIDEVHMLTDQ-------------SFNALLKTLEEP----------PAHIVFILAT----TEFHKIPETILSRCQD 174 (484)
T ss_pred CEEEEEechhhcCHH-------------HHHHHHHHhhcC----------CCceEEEeec----CChhhccHHHHhhhhe
Confidence 459999999999775 789999999963 3577888665 4688999999999975
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.|.+++.+++.+.|+ .++..+|+ .|+++|+..||+.|-..
T Consensus 175 -~~f~~ls~~~i~~~L~-----------~i~~~Egi--~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 175 -FIFKKVPLSVLQDYSE-----------KLCKIENV--QYDQEGLFWIAKKGDGS 215 (484)
T ss_pred -eeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCCh
Confidence 6999999999988888 45666786 78999999999887644
No 103
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.63 E-value=3.4e-15 Score=162.32 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=96.7
Q ss_pred ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--------ceeecCceEEEEEeCCcccCCCCCC
Q psy2392 418 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDL 489 (1165)
Q Consensus 418 ~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--------~~~~~t~~ilfI~~gaf~~~~p~~l 489 (1165)
+++.|+||||||++.+.. -.-|.|.||+..++.- ...++-.+..+|+|+ ++.--+
T Consensus 102 e~~DVLFIDEIHrl~~~v-------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT----Tr~G~l 164 (332)
T COG2255 102 EEGDVLFIDEIHRLSPAV-------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT----TRAGML 164 (332)
T ss_pred CcCCeEEEehhhhcChhH-------------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec----cccccc
Confidence 357799999999999884 4478899998776542 234555566666663 345557
Q ss_pred chhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 490 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 490 ~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
...|+.||.+...+.-++.+|+.+|+... ..+ .++.+++++..+||+.+-. ++ |-..++
T Consensus 165 t~PLrdRFGi~~rlefY~~~eL~~Iv~r~--------a~~-----l~i~i~~~~a~eIA~rSRG----TP----RIAnRL 223 (332)
T COG2255 165 TNPLRDRFGIIQRLEFYTVEELEEIVKRS--------AKI-----LGIEIDEEAALEIARRSRG----TP----RIANRL 223 (332)
T ss_pred cchhHHhcCCeeeeecCCHHHHHHHHHHH--------HHH-----hCCCCChHHHHHHHHhccC----Cc----HHHHHH
Confidence 77899999999999999999999999632 122 3568889999999998832 23 444555
Q ss_pred HHHHHHHhhcccCCCeeEEcccccccccccC
Q psy2392 570 MEKLLEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 570 ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
+.++-+-.-.. ..-.|+.+.+++.+..+
T Consensus 224 LrRVRDfa~V~---~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 224 LRRVRDFAQVK---GDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHHHh---cCCcccHHHHHHHHHHh
Confidence 55554322111 11346666666665544
No 104
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.6e-15 Score=182.33 Aligned_cols=235 Identities=23% Similarity=0.360 Sum_probs=168.4
Q ss_pred ccEecchhhHHHHHHHHH---hhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALR---NRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~---~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
.+|.|.++|++.+.+.+. .+-+...+.. + .|.+++|+||||||||.|||++|.+.+.||+.++.|+|++- |
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGa--k---iPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem-f 223 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGA--K---IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-F 223 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhccc--c---cccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh-h
Confidence 478899999988888664 2211222222 1 35899999999999999999999999999999999999986 8
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
||-+ ...+|++|.++
T Consensus 224 VGvG-AsRVRdLF~qA---------------------------------------------------------------- 238 (596)
T COG0465 224 VGVG-ASRVRDLFEQA---------------------------------------------------------------- 238 (596)
T ss_pred cCCC-cHHHHHHHHHh----------------------------------------------------------------
Confidence 8888 56788999773
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
..+ .
T Consensus 239 --------------------------------------------------------------------------kk~--a 242 (596)
T COG0465 239 --------------------------------------------------------------------------KKN--A 242 (596)
T ss_pred --------------------------------------------------------------------------hcc--C
Confidence 112 3
Q ss_pred ceEEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 420 NGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
+|||||||||.+...+..+ +++...+|..-++||.-|||-. ..+.|++|+++ ++|+-++|+|+ ||
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--------~~~gviviaaT----NRpdVlD~ALlRpgR 310 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------GNEGVIVIAAT----NRPDVLDPALLRPGR 310 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------CCCceEEEecC----CCcccchHhhcCCCC
Confidence 6999999999999887543 3455677888889999999843 23456677773 78999999998 89
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
|+..|....++-....+||+ ....++.+.-+- -+..||+.... ..||-..+-+.|..+-
T Consensus 311 FDRqI~V~~PDi~gRe~Ilk-------------vH~~~~~l~~~V-dl~~iAr~tpG------fsGAdL~nl~NEAal~- 369 (596)
T COG0465 311 FDRQILVELPDIKGREQILK-------------VHAKNKPLAEDV-DLKKIARGTPG------FSGADLANLLNEAALL- 369 (596)
T ss_pred cceeeecCCcchhhHHHHHH-------------HHhhcCCCCCcC-CHHHHhhhCCC------cccchHhhhHHHHHHH-
Confidence 99999999999999999995 112233333111 12336666644 5677655545455443
Q ss_pred hhcccCCCeeEEcccccccccccC
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
.+......||...+.++...+
T Consensus 370 ---aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 370 ---AARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred ---HHHhcCeeEeccchHHHHHHH
Confidence 344444567766666655543
No 105
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.63 E-value=2.3e-15 Score=182.76 Aligned_cols=178 Identities=29% Similarity=0.457 Sum_probs=130.8
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++++++.+.+.+.. ++........ ....|.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 55 ~di~g~~~~k~~l~~~~~~-l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~ 131 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDF-LKNPSKFTKL-GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGV 131 (495)
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHhc-CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH-Hhcc
Confidence 6889999999998877653 2211111100 01125899999999999999999999999999999999988766 7776
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..|..
T Consensus 132 ~~-~~l~~~f~~a~~----------------------------------------------------------------- 145 (495)
T TIGR01241 132 GA-SRVRDLFEQAKK----------------------------------------------------------------- 145 (495)
T ss_pred cH-HHHHHHHHHHHh-----------------------------------------------------------------
Confidence 53 345555544310
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..++|
T Consensus 146 ---------------------------------------------------------------------------~~p~I 150 (495)
T TIGR01241 146 ---------------------------------------------------------------------------NAPCI 150 (495)
T ss_pred ---------------------------------------------------------------------------cCCCE
Confidence 14689
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.|+...+.. ++.+.....+.+.||..|+|. ....++++|+++ +.|..+.|+|+ |||..
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--------~~~~~v~vI~aT----n~~~~ld~al~r~gRfd~ 218 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--------GTNTGVIVIAAT----NRPDVLDPALLRPGRFDR 218 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--------cCCCCeEEEEec----CChhhcCHHHhcCCcceE
Confidence 9999999999875432 222334445667788888753 234568888886 47888999998 49999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.++++.++.++..+||+
T Consensus 219 ~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 219 QVVVDLPDIKGREEILK 235 (495)
T ss_pred EEEcCCCCHHHHHHHHH
Confidence 99999999999999998
No 106
>KOG0729|consensus
Probab=99.62 E-value=6.8e-16 Score=164.96 Aligned_cols=180 Identities=27% Similarity=0.423 Sum_probs=141.1
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
-.+|.|-.+.++.+++.+..++.++.-+-.++.. +|+++|+|||||+|||.+|+++|+-.+.-|+++=.|+++++ |+|
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvqk-yvg 253 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVG 253 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH-Hhh
Confidence 3589999999999999998776655444444433 47899999999999999999999999999999999999997 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
++ ..+++++|+.+
T Consensus 254 eg-armvrelf~ma------------------------------------------------------------------ 266 (435)
T KOG0729|consen 254 EG-ARMVRELFEMA------------------------------------------------------------------ 266 (435)
T ss_pred hh-HHHHHHHHHHh------------------------------------------------------------------
Confidence 98 67889998773
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
..+.-+
T Consensus 267 --------------------------------------------------------------------------rtkkac 272 (435)
T KOG0729|consen 267 --------------------------------------------------------------------------RTKKAC 272 (435)
T ss_pred --------------------------------------------------------------------------cccceE
Confidence 001468
Q ss_pred EEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
|||+||||.+...+.+. .++| ..||+.+|.++-.-- |-=...||-+.++ +++|..|.|+|+ ||++
T Consensus 273 iiffdeidaiggarfddg~ggd---nevqrtmleli~qld-----gfdprgnikvlma----tnrpdtldpallrpgrld 340 (435)
T KOG0729|consen 273 IIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELINQLD-----GFDPRGNIKVLMA----TNRPDTLDPALLRPGRLD 340 (435)
T ss_pred EEEeeccccccCccccCCCCCc---HHHHHHHHHHHHhcc-----CCCCCCCeEEEee----cCCCCCcCHhhcCCcccc
Confidence 99999999999877652 2333 349999888763210 1113346666666 478999999998 8999
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
..|+|.-++-+-..+|++
T Consensus 341 rkvef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 341 RKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred cceeccCCcccccceeEE
Confidence 999999999988888885
No 107
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.6e-15 Score=183.11 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=78.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|.+... .|+.||++||.. ..|+.||+++ ++++.+++.+++||-
T Consensus 119 r~KVIIIDEah~LT~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~KIp~TIrSRCq 171 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEEP----------PPHVKFILAT----TDPQKIPVTVLSRCL 171 (830)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHHHhc----------CCCeEEEEEE----CChhhccchhhhheE
Confidence 3569999999999765 688999999962 3567777775 478899999999995
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
++.|++|+.+++.++|+ .+++.||+ .+++++++.|++.|-..
T Consensus 172 -~f~Fk~Ls~eeIv~~L~-----------~Il~~EgI--~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 172 -QFNLKQMPAGHIVSHLE-----------RILGEERI--AFEPQALRLLARAAQGS 213 (830)
T ss_pred -EEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCCC
Confidence 57999999999999888 55667887 67999999999887543
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.61 E-value=2.5e-15 Score=177.80 Aligned_cols=176 Identities=22% Similarity=0.424 Sum_probs=128.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|++..++.+.+++..+..+..+....+.. +|.++||+||||||||++|+++|+.++.+|+.+..+++.+. |+|.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k-~~Ge 260 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK-YLGD 260 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh-hcch
Confidence 478999999999999997665554444333222 35799999999999999999999999999999999988764 7776
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ...++++|..+
T Consensus 261 ~-~~~vr~lF~~A------------------------------------------------------------------- 272 (438)
T PTZ00361 261 G-PKLVRELFRVA------------------------------------------------------------------- 272 (438)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 33344444331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 273 -----------------------------------------------------------------------~~--~~P~I 279 (438)
T PTZ00361 273 -----------------------------------------------------------------------EE--NAPSI 279 (438)
T ss_pred -----------------------------------------------------------------------Hh--CCCcE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhh---cccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDL---LPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~l---L~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
|||||||.+..++.+.. +.+ ..+|+.+ |..++|- ....++.+|+++ +.++.+.|+|+ ||
T Consensus 280 LfIDEID~l~~kR~~~~sgg~---~e~qr~ll~LL~~Ldg~--------~~~~~V~VI~AT----Nr~d~LDpaLlRpGR 344 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGE---KEIQRTMLELLNQLDGF--------DSRGDVKVIMAT----NRIESLDPALIRPGR 344 (438)
T ss_pred EeHHHHHHHhccCCCCCCccc---HHHHHHHHHHHHHHhhh--------cccCCeEEEEec----CChHHhhHHhccCCe
Confidence 99999999987654321 211 1244444 4444442 123467788874 57888999987 79
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+..|+|.+++.+++.+|+.
T Consensus 345 fd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 345 IDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred eEEEEEeCCCCHHHHHHHHH
Confidence 99999999999999999994
No 109
>KOG0651|consensus
Probab=99.61 E-value=7e-16 Score=168.74 Aligned_cols=184 Identities=26% Similarity=0.372 Sum_probs=144.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
+.+.|.-..+.++.+.+..++....++.+... .+|.+++||||||+|||.+|+++|..++.+|+.+.++++.++ |+|+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k-yiGE 209 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK-YIGE 209 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh-hccc
Confidence 68889999999999999887766666554322 237999999999999999999999999999999999999988 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..++++.|+.|..+
T Consensus 210 s-aRlIRemf~yA~~~---------------------------------------------------------------- 224 (388)
T KOG0651|consen 210 S-ARLIRDMFRYAREV---------------------------------------------------------------- 224 (388)
T ss_pred H-HHHHHHHHHHHhhh----------------------------------------------------------------
Confidence 8 67899998877222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
+++|
T Consensus 225 ----------------------------------------------------------------------------~pci 228 (388)
T KOG0651|consen 225 ----------------------------------------------------------------------------IPCI 228 (388)
T ss_pred ----------------------------------------------------------------------------CceE
Confidence 4589
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
+|+||||.+.+...+ .++...++ ||+.|..++.+ -+|.-.-..+-.||+|+ +|+-|.|+|+ |||.-.
T Consensus 229 ifmdeiDAigGRr~s-e~Ts~dre-iqrTLMeLlnq-----mdgfd~l~rVk~ImatN----rpdtLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFS-EGTSSDRE-IQRTLMELLNQ-----MDGFDTLHRVKTIMATN----RPDTLDPALLRPGRLDRK 297 (388)
T ss_pred EeehhhhhhccEEec-cccchhHH-HHHHHHHHHHh-----hccchhcccccEEEecC----CccccchhhcCCccccce
Confidence 999999999998643 33333444 99998887763 12333334466789885 8999999998 799988
Q ss_pred EEcCCCCHHHHHHHHhhhHH
Q psy2392 1099 VELDSLSISDFTRIMTSTNV 1118 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~ 1118 (1165)
++.+-+.+.--..|++.|..
T Consensus 298 ~~iPlpne~~r~~I~Kih~~ 317 (388)
T KOG0651|consen 298 VEIPLPNEQARLGILKIHVQ 317 (388)
T ss_pred eccCCcchhhceeeEeeccc
Confidence 88887777666667775544
No 110
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.9e-15 Score=175.31 Aligned_cols=138 Identities=21% Similarity=0.354 Sum_probs=101.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.++.. .|+.||+.+|.. ..+++||+++ ++|..+.|.+.+|+.
T Consensus 117 ~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~p----------~~~vv~Ilat----tn~~kl~~~L~SR~~ 169 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE-------------AFNALLKTLEEP----------PSHVVFVLAT----TNLEKVPPTIISRCQ 169 (472)
T ss_pred CeEEEEEEChHHhHHH-------------HHHHHHHHHHhC----------CCcEEEEEEe----CChHhhhHHHhcCcE
Confidence 4679999999999754 566899999852 3456777653 357789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+++.+++..++. ..+..+|+ .+++++++.|++.+ ++++|.+.+.++++..
T Consensus 170 -vv~f~~l~~~el~~~L~-----------~i~~~egi--~i~~eal~~Ia~~s--------~GdlR~aln~Le~l~~--- 224 (472)
T PRK14962 170 -VIEFRNISDELIIKRLQ-----------EVAEAEGI--EIDREALSFIAKRA--------SGGLRDALTMLEQVWK--- 224 (472)
T ss_pred -EEEECCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998884 22334555 78899999999977 6899999999998763
Q ss_pred cccCCCeeEEcccccccccccCccccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLSINEDLSRYDSGM 613 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~ 613 (1165)
+. . . .||.+.|++.++.... ..++.+++++
T Consensus 225 ~~-~-~--~It~e~V~~~l~~~~~-~~i~~li~si 254 (472)
T PRK14962 225 FS-E-G--KITLETVHEALGLIPI-EVVRDYINAI 254 (472)
T ss_pred hc-C-C--CCCHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 21 1 1 2888888877665432 3455555533
No 111
>KOG0740|consensus
Probab=99.61 E-value=4.6e-15 Score=172.08 Aligned_cols=205 Identities=26% Similarity=0.373 Sum_probs=162.0
Q ss_pred HhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 180 ~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
....++.|.+.++..+.+++.++..|+.++.+++++ +.++||+||||+|||.|++++|.+.+..|+.+.++.++++ |
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p--~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK-~ 226 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP--VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK-Y 226 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccccc--cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh-c
Confidence 344799999999999999999888888888888875 5899999999999999999999999999999999999997 9
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
+|.+ +.+++.+|..+
T Consensus 227 ~Ge~-eK~vralf~vA---------------------------------------------------------------- 241 (428)
T KOG0740|consen 227 VGES-EKLVRALFKVA---------------------------------------------------------------- 241 (428)
T ss_pred cChH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 9999 78888888763
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
+..+
T Consensus 242 ----------------------------------------------------------------------------r~~q 245 (428)
T KOG0740|consen 242 ----------------------------------------------------------------------------RSLQ 245 (428)
T ss_pred ----------------------------------------------------------------------------HhcC
Confidence 1127
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
++||||||||++...+.+ +..+.++.---..|++. +|.. ...-++|++|+|+ +.|+.++-+++.||.-
T Consensus 246 PsvifidEidslls~Rs~-~e~e~srr~ktefLiq~-~~~~------s~~~drvlvigaT----N~P~e~Dea~~Rrf~k 313 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQF-DGKN------SAPDDRVLVIGAT----NRPWELDEAARRRFVK 313 (428)
T ss_pred CeEEEechhHHHHhhcCC-cccccchhhhhHHHhhh-cccc------CCCCCeEEEEecC----CCchHHHHHHHHHhhc
Confidence 899999999999988743 33344433233344443 3321 1234589999884 7899999999999999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
++.++.++.+....+++ .+|..++. .+++..++.|++....
T Consensus 314 r~yiplPd~etr~~~~~-----------~ll~~~~~--~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 314 RLYIPLPDYETRSLLWK-----------QLLKEQPN--GLSDLDISLLAKVTEG 354 (428)
T ss_pred eeeecCCCHHHHHHHHH-----------HHHHhCCC--CccHHHHHHHHHHhcC
Confidence 99999999999888883 33444433 5567888999988854
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.60 E-value=3.7e-15 Score=176.39 Aligned_cols=179 Identities=22% Similarity=0.414 Sum_probs=129.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|.|++..++.+.+++..++....+...... .++.++||+||||||||++|+++|+.++.+|+.++++++.++ |+|.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k-~~Ge 260 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGI-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK-YLGD 260 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh-hcch
Confidence 68899999999999999765433322221111 126899999999999999999999999999999999998877 8887
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..|..
T Consensus 261 ~~-~~vr~lF~~A~~----------------------------------------------------------------- 274 (438)
T PTZ00361 261 GP-KLVRELFRVAEE----------------------------------------------------------------- 274 (438)
T ss_pred HH-HHHHHHHHHHHh-----------------------------------------------------------------
Confidence 63 446666544400
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..++|
T Consensus 275 ---------------------------------------------------------------------------~~P~I 279 (438)
T PTZ00361 275 ---------------------------------------------------------------------------NAPSI 279 (438)
T ss_pred ---------------------------------------------------------------------------CCCcE
Confidence 14679
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.+...+... ++.+ ..+|+.++.++..- -|.....++.+|++. +.|+.+.|.|+ |||..
T Consensus 280 LfIDEID~l~~kR~~~~sgg~---~e~qr~ll~LL~~L-----dg~~~~~~V~VI~AT----Nr~d~LDpaLlRpGRfd~ 347 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGE---KEIQRTMLELLNQL-----DGFDSRGDVKVIMAT----NRIESLDPALIRPGRIDR 347 (438)
T ss_pred EeHHHHHHHhccCCCCCCccc---HHHHHHHHHHHHHH-----hhhcccCCeEEEEec----CChHHhhHHhccCCeeEE
Confidence 9999999998765321 1111 12566555444210 011234567888875 47888999987 79999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.++|++++.++..+||.
T Consensus 348 ~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 348 KIEFPNPDEKTKRRIFE 364 (438)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 99999999999999998
No 113
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=9.6e-15 Score=181.24 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=86.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|++++. .|+.||+.||. ...|+.||++. +.+..+.|.+++|+-
T Consensus 119 k~KViIIDEAh~LT~e-------------AqNALLKtLEE----------PP~~vrFILaT----Te~~kLl~TIlSRCq 171 (944)
T PRK14949 119 RFKVYLIDEVHMLSRS-------------SFNALLKTLEE----------PPEHVKFLLAT----TDPQKLPVTVLSRCL 171 (944)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhc----------cCCCeEEEEEC----CCchhchHHHHHhhe
Confidence 5789999999999765 67799999996 24567777763 466779999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
++.|++|+.+++...|. ..+..++ +.|++++++.|++.+ +++.|.+.+++++++
T Consensus 172 -~f~fkpLs~eEI~~~L~-----------~il~~Eg--I~~edeAL~lIA~~S--------~Gd~R~ALnLLdQal 225 (944)
T PRK14949 172 -QFNLKSLTQDEIGTQLN-----------HILTQEQ--LPFEAEALTLLAKAA--------NGSMRDALSLTDQAI 225 (944)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 57999999999998884 2233345 478999999999887 678999999999887
No 114
>KOG0729|consensus
Probab=99.60 E-value=7.2e-16 Score=164.76 Aligned_cols=180 Identities=27% Similarity=0.401 Sum_probs=134.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.+|.|-.+.++.+++.+..++.....+-.+. ..+|+++|||||||+|||.+|+++|+..+.-|+++-+|+++++ |+|+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselvqk-yvge 254 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGE 254 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH-Hhhh
Confidence 6899999999999999886432211111111 1137999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..+++++|+.|+.
T Consensus 255 g-armvrelf~mart----------------------------------------------------------------- 268 (435)
T KOG0729|consen 255 G-ARMVRELFEMART----------------------------------------------------------------- 268 (435)
T ss_pred h-HHHHHHHHHHhcc-----------------------------------------------------------------
Confidence 9 5789999877611
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
+ .-+|
T Consensus 269 --------------------------------------------------------------------k-------kaci 273 (435)
T KOG0729|consen 269 --------------------------------------------------------------------K-------KACI 273 (435)
T ss_pred --------------------------------------------------------------------c-------ceEE
Confidence 1 3479
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
||+||||.|.+.+... |.+ +..-|||.+|.++-.- -|--...||-..++ .++|.-|.|+|+ ||+.-.
T Consensus 274 iffdeidaiggarfdd-g~g-gdnevqrtmleli~ql-----dgfdprgnikvlma----tnrpdtldpallrpgrldrk 342 (435)
T KOG0729|consen 274 IFFDEIDAIGGARFDD-GAG-GDNEVQRTMLELINQL-----DGFDPRGNIKVLMA----TNRPDTLDPALLRPGRLDRK 342 (435)
T ss_pred EEeeccccccCccccC-CCC-CcHHHHHHHHHHHHhc-----cCCCCCCCeEEEee----cCCCCCcCHhhcCCcccccc
Confidence 9999999999886431 111 1234999998876421 02222345544444 368999999998 799999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
|+|.-++.+-...|++
T Consensus 343 vef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 343 VEFGLPDLEGRTHIFK 358 (435)
T ss_pred eeccCCcccccceeEE
Confidence 9999888887777776
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=4.8e-15 Score=184.97 Aligned_cols=150 Identities=21% Similarity=0.335 Sum_probs=103.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC-CCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~-~l~pel~~R~ 497 (1165)
...|+||||||.+++. .|+.||+.+|.+ ++++|++. +.+|+ .++|.|++|+
T Consensus 109 ~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g------------~IiLI~aT---Tenp~~~l~~aL~SR~ 160 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-------------QQDALLPWVENG------------TITLIGAT---TENPYFEVNKALVSRS 160 (725)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHhcCc------------eEEEEEec---CCChHhhhhhHhhccc
Confidence 3579999999999765 466899988863 24566653 23553 5889999997
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
.+ +.|++|+.+++..|+. ..+.+....+..+ .+.+++++++.|++.+ .+++|.+.++++.++...
T Consensus 161 ~v-~~l~pLs~edi~~IL~----~~l~~~~~~~g~~--~v~I~deaL~~La~~s--------~GD~R~lln~Le~a~~~~ 225 (725)
T PRK13341 161 RL-FRLKSLSDEDLHQLLK----RALQDKERGYGDR--KVDLEPEAEKHLVDVA--------NGDARSLLNALELAVEST 225 (725)
T ss_pred cc-eecCCCCHHHHHHHHH----HHHHHHHhhcCCc--ccCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhc
Confidence 65 7999999999999995 2333222222233 3578999999999876 578999999999977422
Q ss_pred hcccCCC-eeEEcccccccccccCcc--------cc-ccccccccc
Q psy2392 578 SFNSNNI-SLLVDADYVNSRLGDLSI--------NE-DLSRYDSGM 613 (1165)
Q Consensus 578 ~~~~~~~-~~~i~~~~v~~~~~~~~~--------~~-dls~~i~~~ 613 (1165)
. .... .+.||.+.+++.+++... .+ .+|+|++++
T Consensus 226 ~--~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksi 269 (725)
T PRK13341 226 P--PDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSL 269 (725)
T ss_pred c--cCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Confidence 1 1111 245787777776655221 11 277788766
No 116
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=8.5e-15 Score=180.72 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=144.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|.+++++.+.+.+.. ++.......... ..|.++||+||||||||++|+++|..++.||+.++++++.+. |+|.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~-~~g~ 259 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGV 259 (638)
T ss_pred HhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH-hhhh
Confidence 4789999999888886643 222222111111 135799999999999999999999999999999999887542 4443
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++++|..+
T Consensus 260 ~-~~~vr~lF~~A------------------------------------------------------------------- 271 (638)
T CHL00176 260 G-AARVRDLFKKA------------------------------------------------------------------- 271 (638)
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 12233333221
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 272 -----------------------------------------------------------------------~~--~~P~I 278 (638)
T CHL00176 272 -----------------------------------------------------------------------KE--NSPCI 278 (638)
T ss_pred -----------------------------------------------------------------------hc--CCCcE
Confidence 11 14789
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||.+...+..+. +.+...+.+.+.||..++|.. ...++++|+++ +.|..+.|+|+ |||+.
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~--------~~~~ViVIaaT----N~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK--------GNKGVIVIAAT----NRVDILDAALLRPGRFDR 346 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc--------CCCCeeEEEec----CchHhhhhhhhccccCce
Confidence 99999999987654322 222334456667777777632 34578888884 56778899998 69999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.|.|..++.+++.+||+ ..++. .. ..++..+..|+..+ +.+-.+-|.+++....
T Consensus 347 ~I~v~lPd~~~R~~IL~----~~l~~-------~~---~~~d~~l~~lA~~t-------~G~sgaDL~~lvneAa 400 (638)
T CHL00176 347 QITVSLPDREGRLDILK----VHARN-------KK---LSPDVSLELIARRT-------PGFSGADLANLLNEAA 400 (638)
T ss_pred EEEECCCCHHHHHHHHH----HHHhh-------cc---cchhHHHHHHHhcC-------CCCCHHHHHHHHHHHH
Confidence 99999999999999994 22211 11 12345566776655 3445667888877654
No 117
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.3e-15 Score=184.26 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=76.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.||.. ..|+.||++. +.|..++|.+++||-
T Consensus 119 k~KViIIDEAh~LT~e-------------AqNALLKtLEEP----------P~~vrFILaT----Te~~kLl~TIlSRCq 171 (944)
T PRK14949 119 RFKVYLIDEVHMLSRS-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTVLSRCL 171 (944)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhcc----------CCCeEEEEEC----CCchhchHHHHHhhe
Confidence 3569999999999765 899999999963 3466677763 467789999999995
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
++.|++|+.+++.+.|+ ..+..+|+ .|++++++.|++.|-.
T Consensus 172 -~f~fkpLs~eEI~~~L~-----------~il~~EgI--~~edeAL~lIA~~S~G 212 (944)
T PRK14949 172 -QFNLKSLTQDEIGTQLN-----------HILTQEQL--PFEAEALTLLAKAANG 212 (944)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999998888 34455665 7899999999987754
No 118
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.2e-14 Score=177.49 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=94.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .++.||+.||. ...|+.||+++ +++..+.+.+++||.
T Consensus 119 r~KVIIIDEah~LT~~-------------A~NALLKtLEE----------PP~~v~FILaT----td~~KIp~TIrSRCq 171 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEE----------PPPHVKFILAT----TDPQKIPVTVLSRCL 171 (830)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHHHh----------cCCCeEEEEEE----CChhhccchhhhheE
Confidence 4789999999999765 56699999986 34577888774 568889999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|++|+.+++.++|. ..++.+|+ .+++++++.|++.+ +++.|...+++++.+.
T Consensus 172 -~f~Fk~Ls~eeIv~~L~-----------~Il~~EgI--~id~eAL~lIA~~A--------~GsmRdALsLLdQAia--- 226 (830)
T PRK07003 172 -QFNLKQMPAGHIVSHLE-----------RILGEERI--AFEPQALRLLARAA--------QGSMRDALSLTDQAIA--- 226 (830)
T ss_pred -EEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 56999999999998884 33455665 67999999999988 5778999998888763
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.. -.|+.+.|.+.++
T Consensus 227 ~~~----~~It~~~V~~~LG 242 (830)
T PRK07003 227 YSA----NEVTETAVSGMLG 242 (830)
T ss_pred hcc----CCcCHHHHHHHhC
Confidence 211 1256666655444
No 119
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.59 E-value=2e-14 Score=163.78 Aligned_cols=140 Identities=14% Similarity=0.265 Sum_probs=93.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--------eceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--------~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
...++||||||++.+. .|..|+.++++..+.. +........+.+|++. +.+..+.
T Consensus 81 ~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t----~~~~~l~ 143 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT----TRAGMLT 143 (305)
T ss_pred cCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec----CCccccC
Confidence 4679999999999765 3446777777544321 0011222335556553 4567788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
++|++||...+.|.+++.+++.+|+.. .....+ +.++++++++|++.+ .+.+|.+.+++
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~-----------~~~~~~--~~~~~~al~~ia~~~--------~G~pR~~~~ll 202 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSR-----------SAGLLN--VEIEPEAALEIARRS--------RGTPRIANRLL 202 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHH-----------HHHHhC--CCcCHHHHHHHHHHh--------CCCcchHHHHH
Confidence 999999999999999999999999951 112223 478999999999887 45678888888
Q ss_pred HHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+++..-.... .. -.|+.+.|++.+..
T Consensus 203 ~~~~~~a~~~-~~--~~it~~~v~~~l~~ 228 (305)
T TIGR00635 203 RRVRDFAQVR-GQ--KIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHc-CC--CCcCHHHHHHHHHH
Confidence 8765332111 11 23677777665543
No 120
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.7e-15 Score=179.01 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=76.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|.+... .|+.||+.||.. ..|+.||.++ ++|+.+.|.+++||-
T Consensus 124 r~KViIIDEah~Ls~~-------------AaNALLKTLEEP----------P~~v~FILaT----tep~kLlpTIrSRCq 176 (700)
T PRK12323 124 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRCL 176 (700)
T ss_pred CceEEEEEChHhcCHH-------------HHHHHHHhhccC----------CCCceEEEEe----CChHhhhhHHHHHHH
Confidence 3469999999999876 788999999962 3566787775 478899999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. +.|++++.+++.+.|+ .++..+|+ .+++++++.|++.|-.
T Consensus 177 ~-f~f~~ls~eei~~~L~-----------~Il~~Egi--~~d~eAL~~IA~~A~G 217 (700)
T PRK12323 177 Q-FNLKQMPPGHIVSHLD-----------AILGEEGI--AHEVNALRLLAQAAQG 217 (700)
T ss_pred h-cccCCCChHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 5 6999999999998888 45566777 6789999999887643
No 121
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.6e-15 Score=177.71 Aligned_cols=173 Identities=28% Similarity=0.482 Sum_probs=140.3
Q ss_pred hcccchHHHHHHHHHHHHh-----HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRN-----RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~-----~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
.+|.|.+++++++.+.+.. .|..+|- ..|+++||+||||+|||+|||++|.+.+.||+.+++|+|++.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGa-------kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGA-------KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhccc-------ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5789999999998887752 2222221 126999999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|||.+. +.+|++|..|.++
T Consensus 223 -fVGvGA-sRVRdLF~qAkk~----------------------------------------------------------- 241 (596)
T COG0465 223 -FVGVGA-SRVRDLFEQAKKN----------------------------------------------------------- 241 (596)
T ss_pred -hcCCCc-HHHHHHHHHhhcc-----------------------------------------------------------
Confidence 999995 5699999887444
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 242 -------------------------------------------------------------------------------- 241 (596)
T COG0465 242 -------------------------------------------------------------------------------- 241 (596)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-- 1092 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~-- 1092 (1165)
.++||||||||++.+.+.-+ +++...+|-.-+.||--|+|.. ..+.|..|+++ ++|+-+.|+|+
T Consensus 242 -aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--------~~~gviviaaT----NRpdVlD~ALlRp 308 (596)
T COG0465 242 -APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------GNEGVIVIAAT----NRPDVLDPALLRP 308 (596)
T ss_pred -CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------CCCceEEEecC----CCcccchHhhcCC
Confidence 45799999999999986432 3455567777788999999853 22456666665 58888999999
Q ss_pred ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1093 GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1093 gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||...|..+.++-....+||+
T Consensus 309 gRFDRqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 309 GRFDRQILVELPDIKGREQILK 330 (596)
T ss_pred CCcceeeecCCcchhhHHHHHH
Confidence 7999999999999999999998
No 122
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.4e-14 Score=175.30 Aligned_cols=125 Identities=22% Similarity=0.322 Sum_probs=96.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .++.||+.+|.. ..++.||.++ +.|..+.+.+++|+.
T Consensus 118 k~KV~IIDEVh~LS~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~kIp~TIlSRCq 170 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH-------------SFNALLKTLEEP----------PEHVKFLFAT----TDPQKLPITVISRCL 170 (702)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhcC----------CCCcEEEEEE----CChHhhhHHHHHhhh
Confidence 5679999999999865 456899999862 3456677664 457778889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++|+.+++.+.|. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 171 ~-feFkpLs~eEI~k~L~-----------~Il~kEgI--~id~eAL~~IA~~S--------~GdLRdALnLLDQaIa--- 225 (702)
T PRK14960 171 Q-FTLRPLAVDEITKHLG-----------AILEKEQI--AADQDAIWQIAESA--------QGSLRDALSLTDQAIA--- 225 (702)
T ss_pred e-eeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999998883 33455665 78899999999887 6789999999988763
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|. . -.|+.+.|++.++.
T Consensus 226 yg--~--g~IT~edV~~lLG~ 242 (702)
T PRK14960 226 YG--Q--GAVHHQDVKEMLGL 242 (702)
T ss_pred hc--C--CCcCHHHHHHHhcc
Confidence 31 1 24788888776663
No 123
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.8e-15 Score=175.35 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=74.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|.++.. .|+.||+.+|.. ..+++||++.. +|..+.|.+++||.
T Consensus 117 ~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~p----------~~~vv~Ilatt----n~~kl~~~L~SR~~ 169 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE-------------AFNALLKTLEEP----------PSHVVFVLATT----NLEKVPPTIISRCQ 169 (472)
T ss_pred CeEEEEEEChHHhHHH-------------HHHHHHHHHHhC----------CCcEEEEEEeC----ChHhhhHHHhcCcE
Confidence 3569999999999764 788999999952 24567776543 57789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+++.+++..+|+ ..++.+|+ .++++|+..|++.+.
T Consensus 170 v-v~f~~l~~~el~~~L~-----------~i~~~egi--~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 170 V-IEFRNISDELIIKRLQ-----------EVAEAEGI--EIDREALSFIAKRAS 209 (472)
T ss_pred E-EEECCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhC
Confidence 5 7999999999998888 44455676 788999999998764
No 124
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.58 E-value=1.3e-14 Score=169.70 Aligned_cols=80 Identities=26% Similarity=0.467 Sum_probs=61.3
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
..++|+|.+.+++.+.+++..+..+..+....+.. +|.++||+||||||||++|+++|+.++.+|+++..+++... |+
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~-~~ 197 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YI 197 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH-hh
Confidence 34589999999999999987665555444333221 35799999999999999999999999999998887665442 44
Q ss_pred cc
Q psy2392 261 GR 262 (1165)
Q Consensus 261 G~ 262 (1165)
|.
T Consensus 198 g~ 199 (364)
T TIGR01242 198 GE 199 (364)
T ss_pred hH
Confidence 43
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.1e-14 Score=176.21 Aligned_cols=124 Identities=22% Similarity=0.363 Sum_probs=94.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|++++. .|+.||+.+|. ...|+.||.+. ++|..+.|.+++|+
T Consensus 119 ~~KV~IIDEah~Ls~~-------------a~NALLKtLEE----------Pp~~v~FIL~T----t~~~kLl~TI~SRC- 170 (647)
T PRK07994 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEE----------PPEHVKFLLAT----TDPQKLPVTILSRC- 170 (647)
T ss_pred CCEEEEEechHhCCHH-------------HHHHHHHHHHc----------CCCCeEEEEec----CCccccchHHHhhh-
Confidence 5779999999999876 56799999996 34677888873 56778999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..+.|++|+.+++.+.|. ..+..+|+ .++++++..|+..+ ++..|...+++++++..
T Consensus 171 ~~~~f~~Ls~~ei~~~L~-----------~il~~e~i--~~e~~aL~~Ia~~s--------~Gs~R~Al~lldqaia~-- 227 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLE-----------HILQAEQI--PFEPRALQLLARAA--------DGSMRDALSLTDQAIAS-- 227 (647)
T ss_pred eEeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 557999999999998884 23344554 78999999999887 67799999999887632
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. + -.|+.+.|++.++
T Consensus 228 -~--~--~~it~~~v~~~lg 242 (647)
T PRK07994 228 -G--N--GQVTTDDVSAMLG 242 (647)
T ss_pred -c--C--CCcCHHHHHHHHc
Confidence 1 1 1256666655444
No 126
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.2e-14 Score=175.58 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=94.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.++.. .++.||+.||. ...|++||.++ ++|..+.|.++|||.
T Consensus 124 r~KViIIDEah~Ls~~-------------AaNALLKTLEE----------PP~~v~FILaT----tep~kLlpTIrSRCq 176 (700)
T PRK12323 124 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEE----------PPEHVKFILAT----TDPQKIPVTVLSRCL 176 (700)
T ss_pred CceEEEEEChHhcCHH-------------HHHHHHHhhcc----------CCCCceEEEEe----CChHhhhhHHHHHHH
Confidence 5789999999999865 56699999986 34577888774 578889999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|...+++++.+.
T Consensus 177 ~-f~f~~ls~eei~~~L~-----------~Il~~Egi--~~d~eAL~~IA~~A--------~Gs~RdALsLLdQaia--- 231 (700)
T PRK12323 177 Q-FNLKQMPPGHIVSHLD-----------AILGEEGI--AHEVNALRLLAQAA--------QGSMRDALSLTDQAIA--- 231 (700)
T ss_pred h-cccCCCChHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999988873 23445565 67899999999887 6788999998887663
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.. -.|+.+.|++.++
T Consensus 232 ~~~----~~It~~~V~~~LG 247 (700)
T PRK12323 232 YSA----GNVSEEAVRGMLG 247 (700)
T ss_pred hcc----CCcCHHHHHHHhC
Confidence 211 1356666655444
No 127
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.58 E-value=9.4e-15 Score=173.58 Aligned_cols=126 Identities=29% Similarity=0.417 Sum_probs=90.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC-CCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~-~l~pel~~R~ 497 (1165)
...||||||||++++. .|+.||+.+|.+. ++||+++ +.+|. .+.|.|++|+
T Consensus 92 ~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~------------iilI~at---t~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-------------QQDALLPHVEDGT------------ITLIGAT---TENPSFEVNPALLSRA 143 (413)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhhcCc------------EEEEEeC---CCChhhhccHHHhccc
Confidence 4679999999999765 5668999998632 4455553 23443 6889999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
. .+.|.+|+.+++.+++. ..+... ..|+ +.+++++++.|++.+ +++.|.+.++++.+...
T Consensus 144 ~-~~~~~~ls~e~i~~lL~----~~l~~~-----~~~~-i~i~~~al~~l~~~s--------~Gd~R~aln~Le~~~~~- 203 (413)
T PRK13342 144 Q-VFELKPLSEEDIEQLLK----RALEDK-----ERGL-VELDDEALDALARLA--------NGDARRALNLLELAALG- 203 (413)
T ss_pred e-eeEeCCCCHHHHHHHHH----HHHHHh-----hcCC-CCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc-
Confidence 4 57999999999999984 122111 1243 478999999998876 57899999999987642
Q ss_pred hcccCCCeeEEccccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
...|+.+.+++.++.
T Consensus 204 -------~~~It~~~v~~~~~~ 218 (413)
T PRK13342 204 -------VDSITLELLEEALQK 218 (413)
T ss_pred -------cCCCCHHHHHHHHhh
Confidence 123677777666554
No 128
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.8e-14 Score=174.28 Aligned_cols=124 Identities=22% Similarity=0.285 Sum_probs=95.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .++.||..+|. ..+|+.||.++ ++|..+.+.+++|+-
T Consensus 119 ~~kV~iIDE~~~ls~~-------------a~naLLk~LEe----------pp~~~~fIlat----td~~kl~~tI~SRc~ 171 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-------------SFNALLKTLEE----------PPSHVKFILAT----TDHHKLPVTVLSRCL 171 (509)
T ss_pred CcEEEEEEChHhcCHH-------------HHHHHHHHHhc----------cCCCeEEEEEE----CChHhchHHHHHHhh
Confidence 5789999999999865 56699999996 24567777764 467788889999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++ +
T Consensus 172 ~-~~f~~l~~~~i~~~l~-----------~il~~egi--~~~~~al~~ia~~s--------~GslR~al~lLdq~i---a 226 (509)
T PRK14958 172 Q-FHLAQLPPLQIAAHCQ-----------HLLKEENV--EFENAALDLLARAA--------NGSVRDALSLLDQSI---A 226 (509)
T ss_pred h-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH---h
Confidence 5 6999999999887763 34556675 67899999999887 578999999999875 3
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . -.||.+.|.+.++
T Consensus 227 ~~-~---~~It~~~V~~~lg 242 (509)
T PRK14958 227 YG-N---GKVLIADVKTMLG 242 (509)
T ss_pred cC-C---CCcCHHHHHHHHC
Confidence 32 1 2477777776555
No 129
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=1.9e-14 Score=165.95 Aligned_cols=113 Identities=19% Similarity=0.353 Sum_probs=78.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--------eccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--------~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
..+++||||||++... +|..|++.+|+..+..-.+ ...-..+.+|+++. .+..+.
T Consensus 102 ~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~----~~~~l~ 164 (328)
T PRK00080 102 EGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT----RAGLLT 164 (328)
T ss_pred cCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC----CcccCC
Confidence 4679999999999754 5666778888654332111 11112356666654 566788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
++|.+||..+++|++++.+++.+||+ ...+..++ .++++++..|++.+-..=+.+.++
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVK-----------RSARILGV--EIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHH
Confidence 99999999999999999999999998 22333455 789999999998776543333333
No 130
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.56 E-value=1.8e-14 Score=186.22 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=81.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
.+|||||||||.++.... +...-..||..|+|... ...+++|++|||+ +.|..++|+|+ ||
T Consensus 1732 SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~-----~~s~~~VIVIAAT----NRPD~LDPALLRPGR 1794 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCE-----RCSTRNILVIAST----HIPQKVDPALIAPNK 1794 (2281)
T ss_pred CCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccc-----cCCCCCEEEEEeC----CCcccCCHhHcCCCC
Confidence 599999999999987621 11123467777876321 1246789999994 68999999999 69
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
|+..|.+..|+..+..+++. .++.+.|+.+.-+...++.+|+.+ +++-++-|.+++..++
T Consensus 1795 FDR~I~Ir~Pd~p~R~kiL~-----------ILl~tkg~~L~~~~vdl~~LA~~T-------~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1795 LNTCIKIRRLLIPQQRKHFF-----------TLSYTRGFHLEKKMFHTNGFGSIT-------MGSNARDLVALTNEAL 1854 (2281)
T ss_pred CCeEEEeCCCCchhHHHHHH-----------HHHhhcCCCCCcccccHHHHHHhC-------CCCCHHHHHHHHHHHH
Confidence 99999999999888777762 112334554432222356666655 3455566777665554
No 131
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.9e-14 Score=176.55 Aligned_cols=93 Identities=22% Similarity=0.375 Sum_probs=76.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|++... .|+.||+.+|.. ..|+.||.+. ++|..+.|.+++|| .
T Consensus 120 ~KV~IIDEah~Ls~~-------------a~NALLKtLEEP----------p~~v~FIL~T----t~~~kLl~TI~SRC-~ 171 (647)
T PRK07994 120 FKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRC-L 171 (647)
T ss_pred CEEEEEechHhCCHH-------------HHHHHHHHHHcC----------CCCeEEEEec----CCccccchHHHhhh-e
Confidence 459999999999876 788999999963 3567777763 47888999999998 5
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
++.|++|+.+++.+.|+ ..+..+|+ .+++++++.|++.|-.
T Consensus 172 ~~~f~~Ls~~ei~~~L~-----------~il~~e~i--~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 172 QFHLKALDVEQIRQQLE-----------HILQAEQI--PFEPRALQLLARAADG 212 (647)
T ss_pred EeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999998888 44556676 7899999999987654
No 132
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.4e-14 Score=175.33 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=75.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .++.||+.+|.. .+|+.||.+. ++|+.+.+.+++||-
T Consensus 119 ~~kV~iIDE~~~ls~~-------------a~naLLk~LEep----------p~~~~fIlat----td~~kl~~tI~SRc~ 171 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-------------SFNALLKTLEEP----------PSHVKFILAT----TDHHKLPVTVLSRCL 171 (509)
T ss_pred CcEEEEEEChHhcCHH-------------HHHHHHHHHhcc----------CCCeEEEEEE----CChHhchHHHHHHhh
Confidence 3569999999999876 678999999963 3566777664 578889999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.|. .+++.+|+ .++++|++.|++.|-
T Consensus 172 ~-~~f~~l~~~~i~~~l~-----------~il~~egi--~~~~~al~~ia~~s~ 211 (509)
T PRK14958 172 Q-FHLAQLPPLQIAAHCQ-----------HLLKEENV--EFENAALDLLARAAN 211 (509)
T ss_pred h-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999988777 56677887 678999999988764
No 133
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.7e-14 Score=174.59 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|.+... .++.||+++|.. ..|+.||.++ ++|..+.+.+++||-+
T Consensus 119 ~KV~IIDEVh~LS~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~kIp~TIlSRCq~ 171 (702)
T PRK14960 119 FKVYLIDEVHMLSTH-------------SFNALLKTLEEP----------PEHVKFLFAT----TDPQKLPITVISRCLQ 171 (702)
T ss_pred cEEEEEechHhcCHH-------------HHHHHHHHHhcC----------CCCcEEEEEE----CChHhhhHHHHHhhhe
Confidence 469999999999775 678999999963 2455677664 4677888999999964
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++|++|+.+++.+.|. .+++.+|+ .++++|+..||+.|-
T Consensus 172 -feFkpLs~eEI~k~L~-----------~Il~kEgI--~id~eAL~~IA~~S~ 210 (702)
T PRK14960 172 -FTLRPLAVDEITKHLG-----------AILEKEQI--AADQDAIWQIAESAQ 210 (702)
T ss_pred -eeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 7999999999998888 56677887 788999999998764
No 134
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.55 E-value=5.3e-14 Score=162.27 Aligned_cols=139 Identities=15% Similarity=0.254 Sum_probs=92.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--------ceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--------~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
..+|+||||||++... ++..|++.+|+..+..- .....-.++.+|+++ +.+..+.
T Consensus 102 ~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at----~~~~~l~ 164 (328)
T PRK00080 102 EGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT----TRAGLLT 164 (328)
T ss_pred cCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec----CCcccCC
Confidence 4679999999999754 34456677775433210 001111235566664 4566788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+.|++||..++.|.+++.+++.+|+.. ..... .+.++++++++|++.+ ++..|.+.+++
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~-----------~~~~~--~~~~~~~~~~~ia~~~--------~G~pR~a~~~l 223 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKR-----------SARIL--GVEIDEEGALEIARRS--------RGTPRIANRLL 223 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHH-----------HHHHc--CCCcCHHHHHHHHHHc--------CCCchHHHHHH
Confidence 999999999999999999999999951 12223 4578999999999877 45568888888
Q ss_pred HHHHHHhhcccCCCeeEEcccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+++..-.... ..-.|+.+.+++.+.
T Consensus 224 ~~~~~~a~~~---~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 224 RRVRDFAQVK---GDGVITKEIADKALD 248 (328)
T ss_pred HHHHHHHHHc---CCCCCCHHHHHHHHH
Confidence 8765432211 112366666666553
No 135
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=4.5e-14 Score=169.99 Aligned_cols=130 Identities=17% Similarity=0.295 Sum_probs=98.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.+++. .++.||..+|. ...+++||+++ +.+..+.+.+++|+.
T Consensus 128 ~~KVvIIDEa~~Ls~~-------------a~naLLk~LEe----------pp~~~vfI~aT----te~~kI~~tI~SRc~ 180 (507)
T PRK06645 128 KHKIFIIDEVHMLSKG-------------AFNALLKTLEE----------PPPHIIFIFAT----TEVQKIPATIISRCQ 180 (507)
T ss_pred CcEEEEEEChhhcCHH-------------HHHHHHHHHhh----------cCCCEEEEEEe----CChHHhhHHHHhcce
Confidence 5789999999999754 56689999985 24577787764 456678889999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|++++.+++.+++. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.-
T Consensus 181 -~~ef~~ls~~el~~~L~-----------~i~~~egi--~ie~eAL~~Ia~~s--------~GslR~al~~Ldkai~~-- 236 (507)
T PRK06645 181 -RYDLRRLSFEEIFKLLE-----------YITKQENL--KTDIEALRIIAYKS--------EGSARDAVSILDQAASM-- 236 (507)
T ss_pred -EEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 57999999999999884 33455665 67899999999876 67899999999998632
Q ss_pred cccCCCeeEEcccccccccccCc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.. ...-.||.+.|++.++...
T Consensus 237 -~~-~~~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 237 -SA-KSDNIISPQVINQMLGLVD 257 (507)
T ss_pred -hc-cCCCCcCHHHHHHHHCCCC
Confidence 11 1112588888887766443
No 136
>CHL00176 ftsH cell division protein; Validated
Probab=99.55 E-value=3.6e-14 Score=175.20 Aligned_cols=178 Identities=24% Similarity=0.399 Sum_probs=125.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|.+++++.+.+.+.. ++......... ...+.++||+||||||||++|+++|..++.||+.++++++.+. |+|.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~-~~g~ 259 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGV 259 (638)
T ss_pred HhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH-hhhh
Confidence 6789999999998887643 22211111111 1126899999999999999999999999999999999987654 5554
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..|.
T Consensus 260 ~~-~~vr~lF~~A~------------------------------------------------------------------ 272 (638)
T CHL00176 260 GA-ARVRDLFKKAK------------------------------------------------------------------ 272 (638)
T ss_pred hH-HHHHHHHHHHh------------------------------------------------------------------
Confidence 42 23444443330
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...++|
T Consensus 273 --------------------------------------------------------------------------~~~P~I 278 (638)
T CHL00176 273 --------------------------------------------------------------------------ENSPCI 278 (638)
T ss_pred --------------------------------------------------------------------------cCCCcE
Confidence 014679
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
+||||||.++..+..+ ++.+...+.+...||..++|. ....++++|++. +.|..+.|.|+ |||..
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~--------~~~~~ViVIaaT----N~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF--------KGNKGVIVIAAT----NRVDILDAALLRPGRFDR 346 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc--------cCCCCeeEEEec----CchHhhhhhhhccccCce
Confidence 9999999998765332 222223334556677667653 234578888886 46777888888 59999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.|..++.++..+||+
T Consensus 347 ~I~v~lPd~~~R~~IL~ 363 (638)
T CHL00176 347 QITVSLPDREGRLDILK 363 (638)
T ss_pred EEEECCCCHHHHHHHHH
Confidence 99999999999999998
No 137
>KOG0989|consensus
Probab=99.55 E-value=1.1e-14 Score=159.94 Aligned_cols=94 Identities=26% Similarity=0.354 Sum_probs=79.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.|++|||.|.++.. .|..|+..||....+|+| .||| +.++.+++.+.+||.
T Consensus 129 ~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s~~trF--------iLIc------nylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSD-------------AQAALRRTMEDFSRTTRF--------ILIC------NYLSRIIRPLVSRCQ 181 (346)
T ss_pred cceEEEEechhhhhHH-------------HHHHHHHHHhccccceEE--------EEEc------CChhhCChHHHhhHH
Confidence 3469999999999987 888999999987766655 3343 578899999999999
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
-+ .|++|..++....|+ .+...||+ .++++|++.|++++-.
T Consensus 182 Kf-rFk~L~d~~iv~rL~-----------~Ia~~E~v--~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 182 KF-RFKKLKDEDIVDRLE-----------KIASKEGV--DIDDDALKLIAKISDG 222 (346)
T ss_pred Hh-cCCCcchHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcCC
Confidence 75 899999999999888 66788899 7889999999998754
No 138
>PLN03025 replication factor C subunit; Provisional
Probab=99.54 E-value=1.6e-14 Score=166.03 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||+|||+|.+... .|+.|++++|-..-+| . ||.++ +.++.++|.|++|+.+
T Consensus 100 ~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~~~t--------~--~il~~----n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 100 HKIVILDEADSMTSG-------------AQQALRRTMEIYSNTT--------R--FALAC----NTSSKIIEPIQSRCAI 152 (319)
T ss_pred eEEEEEechhhcCHH-------------HHHHHHHHHhcccCCc--------e--EEEEe----CCccccchhHHHhhhc
Confidence 469999999999765 7889999998432222 2 33332 3567889999999964
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++|++|+.+++.++|. ..++.+|+ .++++++++|++.+-
T Consensus 153 -i~f~~l~~~~l~~~L~-----------~i~~~egi--~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 153 -VRFSRLSDQEILGRLM-----------KVVEAEKV--PYVPEGLEAIIFTAD 191 (319)
T ss_pred -ccCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 6999999999998888 55667788 678999999988664
No 139
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.3e-14 Score=168.66 Aligned_cols=125 Identities=17% Similarity=0.257 Sum_probs=95.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|+++.. .|+.||+.+|.. ..++.||+++ +++..+.+.+++|+.
T Consensus 119 ~~kViIIDEa~~ls~~-------------a~naLLK~LEep----------p~~v~fIL~T----td~~kil~tI~SRc~ 171 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-------------SFNALLKTLEEP----------PEYVKFILAT----TDYHKIPVTILSRCI 171 (546)
T ss_pred CcEEEEEechhhccHH-------------HHHHHHHHHhcC----------CCCceEEEEE----CChhhhhhhHHHhee
Confidence 5779999999999765 677999999962 3566677653 457778888999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|++|+.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 -~~~f~~Ls~~eI~~~L~-----------~il~~egi--~~e~~Al~~Ia~~s--------~GdlR~alnlLek~i~--- 226 (546)
T PRK14957 172 -QLHLKHISQADIKDQLK-----------IILAKENI--NSDEQSLEYIAYHA--------KGSLRDALSLLDQAIS--- 226 (546)
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 46999999999988873 33445564 78999999999887 5779999999999873
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|.. -.|+.+.|++.++.
T Consensus 227 ~~~----~~It~~~V~~~l~~ 243 (546)
T PRK14957 227 FCG----GELKQAQIKQMLGI 243 (546)
T ss_pred hcc----CCCCHHHHHHHHcc
Confidence 211 13777777766553
No 140
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.54 E-value=7.4e-14 Score=159.11 Aligned_cols=106 Identities=16% Similarity=0.308 Sum_probs=76.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeee--------eeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~--------~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
...++||||||++... .|..|+.++++..+..=. .......+.+|++. +.|..+.
T Consensus 81 ~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t----~~~~~l~ 143 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT----TRAGMLT 143 (305)
T ss_pred cCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec----CCccccC
Confidence 4579999999999764 667788888865432100 11222335555554 4567788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.|.+||...+.|++++.+++.+|++. .++..++ .++++++++|++.+-..
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~-----------~~~~~~~--~~~~~al~~ia~~~~G~ 194 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSR-----------SAGLLNV--EIEPEAALEIARRSRGT 194 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHH-----------HHHHhCC--CcCHHHHHHHHHHhCCC
Confidence 999999998899999999999999981 2223344 78999999999876544
No 141
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=3e-14 Score=169.27 Aligned_cols=94 Identities=31% Similarity=0.508 Sum_probs=69.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC-CCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p-~dl~pel~gR~ 1095 (1165)
...|+||||||++... .|+.||+.+|... +.||+++. .+| ..+.|.|++||
T Consensus 92 ~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~------------iilI~att---~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-------------QQDALLPHVEDGT------------ITLIGATT---ENPSFEVNPALLSRA 143 (413)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhhcCc------------EEEEEeCC---CChhhhccHHHhccc
Confidence 3569999999999765 7889999998632 34555432 234 36889999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
. .+.|++|+.+++.++|. ..+.+. ..|+ +.+++++++.|++.+
T Consensus 144 ~-~~~~~~ls~e~i~~lL~----~~l~~~-----~~~~-i~i~~~al~~l~~~s 186 (413)
T PRK13342 144 Q-VFELKPLSEEDIEQLLK----RALEDK-----ERGL-VELDDEALDALARLA 186 (413)
T ss_pred e-eeEeCCCCHHHHHHHHH----HHHHHh-----hcCC-CCCCHHHHHHHHHhC
Confidence 5 47999999999999988 222221 1144 478999999999876
No 142
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.2e-13 Score=161.47 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=90.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|++... .++.||..+|.. ..++.||.++ +++..+.|.+++|+-
T Consensus 119 ~~kviIIDEa~~l~~~-------------a~naLLk~lEe~----------~~~~~fIl~t----~~~~~l~~tI~SRc~ 171 (363)
T PRK14961 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PQHIKFILAT----TDVEKIPKTILSRCL 171 (363)
T ss_pred CceEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEc----CChHhhhHHHHhhce
Confidence 4579999999999754 566899999852 3455666664 456678899999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.++|. ..++.+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 172 -~~~~~~l~~~el~~~L~-----------~~~~~~g~--~i~~~al~~ia~~s--------~G~~R~al~~l~~~~~--- 226 (363)
T PRK14961 172 -QFKLKIISEEKIFNFLK-----------YILIKESI--DTDEYALKLIAYHA--------HGSMRDALNLLEHAIN--- 226 (363)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998884 23444554 67899999999877 5678999999988753
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+. . -.||.+.|.+.++
T Consensus 227 ~~-~---~~It~~~v~~~l~ 242 (363)
T PRK14961 227 LG-K---GNINIKNVTDMLG 242 (363)
T ss_pred hc-C---CCCCHHHHHHHHC
Confidence 21 1 1366665555443
No 143
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.52 E-value=7e-14 Score=163.54 Aligned_cols=182 Identities=25% Similarity=0.448 Sum_probs=124.5
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
.+++|+|.+..++.+.+++..++....+..... ..+|.++||+||||||||++|+++|+.++.+|+.+.++++... |+
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~-~~ 197 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YI 197 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH-hh
Confidence 346899999999999999876544433222111 1126899999999999999999999999999999887776554 55
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|... ..++++|..+
T Consensus 198 g~~~-~~i~~~f~~a----------------------------------------------------------------- 211 (364)
T TIGR01242 198 GEGA-RLVREIFELA----------------------------------------------------------------- 211 (364)
T ss_pred hHHH-HHHHHHHHHH-----------------------------------------------------------------
Confidence 5431 2233333222
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
....+
T Consensus 212 ---------------------------------------------------------------------------~~~~p 216 (364)
T TIGR01242 212 ---------------------------------------------------------------------------KEKAP 216 (364)
T ss_pred ---------------------------------------------------------------------------HhcCC
Confidence 00146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
+||||||||.+.....+... . ....+|+.++.++..-. +.-...++.||++++ .|+.+.|.++ |||.
T Consensus 217 ~il~iDEiD~l~~~~~~~~~-~-~~~~~~~~l~~ll~~ld-----~~~~~~~v~vI~ttn----~~~~ld~al~r~grfd 285 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGT-S-GDREVQRTLMQLLAELD-----GFDPRGNVKVIAATN----RPDILDPALLRPGRFD 285 (364)
T ss_pred cEEEhhhhhhhccccccCCC-C-ccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEecC----ChhhCChhhcCcccCc
Confidence 79999999999876432111 1 12235665555543100 112345788888874 6777888887 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++++.++.++..+|+.
T Consensus 286 ~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 286 RIIEVPLPDFEGRLEILK 303 (364)
T ss_pred eEEEeCCcCHHHHHHHHH
Confidence 999999999999999987
No 144
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.1e-13 Score=174.94 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=95.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|+++.. .|+.||.+||. ...|++||++. +++..+.+.+++|+.
T Consensus 120 ~~KV~IIDEad~lt~~-------------a~NaLLK~LEE----------pP~~~~fIl~t----t~~~kLl~TIrSRc~ 172 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQ-------------GFNALLKIVEE----------PPEHLKFIFAT----TEPDKVIGTIRSRTH 172 (824)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHHhC----------CCCCeEEEEEe----CChhhhhHHHHhhee
Confidence 5789999999999865 67799999996 34677888764 456668999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|.+|+.+++.++|. +.+..+|+ .++++++..|++.+ ++..|.+.+.|++++.
T Consensus 173 ~-v~F~~l~~~~l~~~L~-----------~il~~EGv--~id~eal~lLa~~s--------gGdlR~Al~eLEKLia--- 227 (824)
T PRK07764 173 H-YPFRLVPPEVMRGYLE-----------RICAQEGV--PVEPGVLPLVIRAG--------GGSVRDSLSVLDQLLA--- 227 (824)
T ss_pred E-EEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 5 6999999999998883 34555675 67899999998877 5678999999999873
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.-. -.||.+.|...++
T Consensus 228 ~~~~---~~IT~e~V~allg 244 (824)
T PRK07764 228 GAGP---EGVTYERAVALLG 244 (824)
T ss_pred hcCC---CCCCHHHHHHHhc
Confidence 2111 1366666665554
No 145
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.1e-13 Score=165.51 Aligned_cols=124 Identities=17% Similarity=0.287 Sum_probs=96.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...|+.||.+. +++..+.+.+++|+.
T Consensus 116 ~~KVvIIDEah~Ls~~-------------A~NaLLK~LEe----------Pp~~v~fIlat----te~~Kl~~tI~SRc~ 168 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS-------------AFNALLKTLEE----------PAPHVKFILAT----TEVKKIPVTIISRCQ 168 (491)
T ss_pred CceEEEEeChHhCCHH-------------HHHHHHHHHhC----------CCCCeEEEEEe----CChHHHHHHHHHhhe
Confidence 5789999999999764 56799999996 23567777764 456678889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.+. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 169 ~-~~f~~l~~~el~~~L~-----------~ia~~Egi--~i~~eAL~lIa~~s--------~GslR~alslLdqli~--- 223 (491)
T PRK14964 169 R-FDLQKIPTDKLVEHLV-----------DIAKKENI--EHDEESLKLIAENS--------SGSMRNALFLLEQAAI--- 223 (491)
T ss_pred e-eecccccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999988873 33455666 68899999999988 5789999999999863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|.. + .||.+.|++.++
T Consensus 224 y~~-~---~It~e~V~~llg 239 (491)
T PRK14964 224 YSN-N---KISEKSVRDLLG 239 (491)
T ss_pred hcC-C---CCCHHHHHHHHc
Confidence 221 1 478888877655
No 146
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=1.8e-13 Score=169.39 Aligned_cols=105 Identities=20% Similarity=0.341 Sum_probs=76.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee---eee---------------eccCceEEEEecCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT---KYG---------------IIKTDHILFIASGA 1078 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~---k~~---------------~~~t~~ilfI~~ga 1078 (1165)
+.|++||||+|.+... .|..|++++|...+.. .|- .....++.+|++++
T Consensus 265 sgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 265 HGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 5799999999998776 8899999998765421 010 01123455555554
Q ss_pred CCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1079 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1079 f~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+|+.+.|.|.+||.. +.|.||+.+|+..|++. .+...++ .|++++++.|+..+.+
T Consensus 332 ---~~~~~l~~aLrSR~~~-i~~~pls~edi~~Il~~-----------~a~~~~v--~ls~eal~~L~~ys~~ 387 (615)
T TIGR02903 332 ---RDPEEINPALRSRCAE-VFFEPLTPEDIALIVLN-----------AAEKINV--HLAAGVEELIARYTIE 387 (615)
T ss_pred ---ccccccCHHHHhceeE-EEeCCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHCCCc
Confidence 3577899999999985 58999999999999992 2223354 6889999999887654
No 147
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.52 E-value=4.9e-14 Score=175.99 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=74.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC-CCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p-~dl~pel~gR~ 1095 (1165)
..+|+||||||.+... .|+.||+.+|.+ ++.+|++.. .+| ..+.|.|++|+
T Consensus 109 ~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g------------~IiLI~aTT---enp~~~l~~aL~SR~ 160 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-------------QQDALLPWVENG------------TITLIGATT---ENPYFEVNKALVSRS 160 (725)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHhcCc------------eEEEEEecC---CChHhhhhhHhhccc
Confidence 3569999999999865 788999999863 345666543 344 35889999998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+ +.|++|+.+++..||+ ..+.++..-++.+++ .+++++++.|++.+
T Consensus 161 ~v-~~l~pLs~edi~~IL~----~~l~~~~~~~g~~~v--~I~deaL~~La~~s 207 (725)
T PRK13341 161 RL-FRLKSLSDEDLHQLLK----RALQDKERGYGDRKV--DLEPEAEKHLVDVA 207 (725)
T ss_pred cc-eecCCCCHHHHHHHHH----HHHHHHHhhcCCccc--CCCHHHHHHHHHhC
Confidence 75 6999999999999999 344443333444555 78999999999877
No 148
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.1e-13 Score=161.95 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|++... .|+.||+.+|... .++.||+++ +++..+.|.+++|+-
T Consensus 120 ~kviIIDEa~~l~~~-------------a~naLLk~lEe~~----------~~~~fIl~t----~~~~~l~~tI~SRc~- 171 (363)
T PRK14961 120 FKVYLIDEVHMLSRH-------------SFNALLKTLEEPP----------QHIKFILAT----TDVEKIPKTILSRCL- 171 (363)
T ss_pred ceEEEEEChhhcCHH-------------HHHHHHHHHhcCC----------CCeEEEEEc----CChHhhhHHHHhhce-
Confidence 459999999999754 6789999999632 345666654 456778899999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|++++.+++.++|. ..++.+|+ .+++++++.|+..+-
T Consensus 172 ~~~~~~l~~~el~~~L~-----------~~~~~~g~--~i~~~al~~ia~~s~ 211 (363)
T PRK14961 172 QFKLKIISEEKIFNFLK-----------YILIKESI--DTDEYALKLIAYHAH 211 (363)
T ss_pred EEeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 44556676 678999999998764
No 149
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.1e-13 Score=169.03 Aligned_cols=125 Identities=16% Similarity=0.289 Sum_probs=94.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++... .++.||..||.. ..++.||+++ +.+..+.+.++|||-
T Consensus 119 k~KVIIIDEad~Ls~~-------------A~NALLKtLEEP----------p~~v~fILaT----td~~kL~~TIrSRC~ 171 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPHKVPVTVLSRCL 171 (709)
T ss_pred CcEEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccchHHHHHHh
Confidence 5689999999998654 566899999852 3456677664 467788899999994
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|++++.+++...|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 -~f~f~~Ls~eeI~~~L~-----------~Il~kEgi--~id~eAL~~Ia~~A--------~GslRdAlnLLDqaia--- 226 (709)
T PRK08691 172 -QFVLRNMTAQQVADHLA-----------HVLDSEKI--AYEPPALQLLGRAA--------AGSMRDALSLLDQAIA--- 226 (709)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHh--------CCCHHHHHHHHHHHHH---
Confidence 46899999999988883 34566675 67999999999988 5789999999999864
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|. . -.|+.+.|...++.
T Consensus 227 ~g--~--g~It~e~V~~lLG~ 243 (709)
T PRK08691 227 LG--S--GKVAENDVRQMIGA 243 (709)
T ss_pred hc--C--CCcCHHHHHHHHcc
Confidence 21 1 13666666665553
No 150
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.7e-13 Score=167.26 Aligned_cols=125 Identities=20% Similarity=0.307 Sum_probs=96.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.+++. .|+.||..+|. ...|++||+++ ++|..+.|.+++|+.
T Consensus 118 ~~KVvIIDEah~Lt~~-------------A~NALLK~LEE----------pp~~~~fIL~t----te~~kll~TI~SRc~ 170 (584)
T PRK14952 118 RYRIFIVDEAHMVTTA-------------GFNALLKIVEE----------PPEHLIFIFAT----TEPEKVLPTIRSRTH 170 (584)
T ss_pred CceEEEEECCCcCCHH-------------HHHHHHHHHhc----------CCCCeEEEEEe----CChHhhHHHHHHhce
Confidence 5789999999999765 67799999996 34577888764 466789999999975
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++.+.|. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 171 -~~~F~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~Ia~~s--------~GdlR~aln~Ldql~~--- 225 (584)
T PRK14952 171 -HYPFRLLPPRTMRALIA-----------RICEQEGV--VVDDAVYPLVIRAG--------GGSPRDTLSVLDQLLA--- 225 (584)
T ss_pred -EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 57999999999888773 34455665 67899999998877 6779999999999863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|... -.||.+.|.+.++
T Consensus 226 ~~~~---~~It~~~v~~llg 242 (584)
T PRK14952 226 GAAD---THVTYQRALGLLG 242 (584)
T ss_pred ccCC---CCcCHHHHHHHHC
Confidence 3211 2367666666554
No 151
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.9e-13 Score=167.43 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=95.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...|+.||.++ +.|..+.+.+++|+-
T Consensus 124 ~~KV~IIDEvh~Ls~~-------------a~NaLLKtLEE----------PP~~~~fIL~T----td~~kil~TIlSRc~ 176 (618)
T PRK14951 124 RFKVFMIDEVHMLTNT-------------AFNAMLKTLEE----------PPEYLKFVLAT----TDPQKVPVTVLSRCL 176 (618)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHhccc----------CCCCeEEEEEE----CCchhhhHHHHHhce
Confidence 4779999999999866 45689999985 24577777663 467788889999985
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|++|+.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 177 -~~~f~~Ls~eei~~~L~-----------~i~~~egi--~ie~~AL~~La~~s--------~GslR~al~lLdq~ia--- 231 (618)
T PRK14951 177 -QFNLRPMAPETVLEHLT-----------QVLAAENV--PAEPQALRLLARAA--------RGSMRDALSLTDQAIA--- 231 (618)
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999988883 33455666 67899999999977 5788999998887753
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|. . -.||.+.|++.++.
T Consensus 232 ~~--~--~~It~~~V~~~Lg~ 248 (618)
T PRK14951 232 FG--S--GQLQEAAVRQMLGS 248 (618)
T ss_pred hc--C--CCcCHHHHHHHHcC
Confidence 21 1 24777777776653
No 152
>PLN03025 replication factor C subunit; Provisional
Probab=99.51 E-value=1.6e-13 Score=157.77 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=78.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.++.. .|+.|+..+|-.. .+..||.++ +.++.+.|.|++|+.
T Consensus 99 ~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~----------~~t~~il~~----n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 99 RHKIVILDEADSMTSG-------------AQQALRRTMEIYS----------NTTRFALAC----NTSSKIIEPIQSRCA 151 (319)
T ss_pred CeEEEEEechhhcCHH-------------HHHHHHHHHhccc----------CCceEEEEe----CCccccchhHHHhhh
Confidence 3679999999999765 5678999888421 112233332 356678999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 572 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~ 572 (1165)
.+.|++|+.+++..+|. ..++.+|+ .+++++++.|++.+ +++.|.+.+.++.
T Consensus 152 -~i~f~~l~~~~l~~~L~-----------~i~~~egi--~i~~~~l~~i~~~~--------~gDlR~aln~Lq~ 203 (319)
T PLN03025 152 -IVRFSRLSDQEILGRLM-----------KVVEAEKV--PYVPEGLEAIIFTA--------DGDMRQALNNLQA 203 (319)
T ss_pred -cccCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHH
Confidence 47999999999988883 33455676 57899999999877 5788988888873
No 153
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.1e-13 Score=167.49 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=75.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.+|... +++.||++. +++..+.+.+++||-
T Consensus 119 ~~kViIIDEa~~ls~~-------------a~naLLK~LEepp----------~~v~fIL~T----td~~kil~tI~SRc~ 171 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-------------SFNALLKTLEEPP----------EYVKFILAT----TDYHKIPVTILSRCI 171 (546)
T ss_pred CcEEEEEechhhccHH-------------HHHHHHHHHhcCC----------CCceEEEEE----CChhhhhhhHHHhee
Confidence 4569999999999765 8899999999632 455666654 457788889999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++|+.+++.+.|. ..++.+|+ .++++|++.|++.|-
T Consensus 172 ~-~~f~~Ls~~eI~~~L~-----------~il~~egi--~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 172 Q-LHLKHISQADIKDQLK-----------IILAKENI--NSDEQSLEYIAYHAK 211 (546)
T ss_pred e-EEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999998888 45566786 788999999998774
No 154
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=1.1e-13 Score=166.64 Aligned_cols=93 Identities=18% Similarity=0.318 Sum_probs=75.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||..+|.. ..|+.||+++ +.+..+.+.+++|+-
T Consensus 128 ~~KVvIIDEa~~Ls~~-------------a~naLLk~LEep----------p~~~vfI~aT----te~~kI~~tI~SRc~ 180 (507)
T PRK06645 128 KHKIFIIDEVHMLSKG-------------AFNALLKTLEEP----------PPHIIFIFAT----TEVQKIPATIISRCQ 180 (507)
T ss_pred CcEEEEEEChhhcCHH-------------HHHHHHHHHhhc----------CCCEEEEEEe----CChHHhhHHHHhcce
Confidence 4569999999999754 788999999952 3567777765 466778899999995
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|++++.+++.++|+ ..++.+|+ .++++|++.|++.+.
T Consensus 181 -~~ef~~ls~~el~~~L~-----------~i~~~egi--~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 181 -RYDLRRLSFEEIFKLLE-----------YITKQENL--KTDIEALRIIAYKSE 220 (507)
T ss_pred -EEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 67999999999999988 55667787 678999999998654
No 155
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=9.7e-14 Score=170.03 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|.+... .|+.||+.+|.. ..|+.||++. ++|+.+.+.+++||-
T Consensus 125 ~KV~IIDEvh~Ls~~-------------a~NaLLKtLEEP----------P~~~~fIL~T----td~~kil~TIlSRc~- 176 (618)
T PRK14951 125 FKVFMIDEVHMLTNT-------------AFNAMLKTLEEP----------PEYLKFVLAT----TDPQKVPVTVLSRCL- 176 (618)
T ss_pred ceEEEEEChhhCCHH-------------HHHHHHHhcccC----------CCCeEEEEEE----CCchhhhHHHHHhce-
Confidence 469999999999876 678999999963 3566677654 468889999999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|++|+.+++.+.|. ..++.+|+ .+++++++.|++.+-
T Consensus 177 ~~~f~~Ls~eei~~~L~-----------~i~~~egi--~ie~~AL~~La~~s~ 216 (618)
T PRK14951 177 QFNLRPMAPETVLEHLT-----------QVLAAENV--PAEPQALRLLARAAR 216 (618)
T ss_pred eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999988888 55667787 678999999998654
No 156
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1e-13 Score=165.69 Aligned_cols=93 Identities=16% Similarity=0.296 Sum_probs=76.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||+.+|... .|+.||++. +++..+.+.+++||-
T Consensus 116 ~~KVvIIDEah~Ls~~-------------A~NaLLK~LEePp----------~~v~fIlat----te~~Kl~~tI~SRc~ 168 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS-------------AFNALLKTLEEPA----------PHVKFILAT----TEVKKIPVTIISRCQ 168 (491)
T ss_pred CceEEEEeChHhCCHH-------------HHHHHHHHHhCCC----------CCeEEEEEe----CChHHHHHHHHHhhe
Confidence 4569999999999765 7889999999632 466677664 467778899999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|++++.+++.+.|. ..++.+|+ .++++|++.|++.+-
T Consensus 169 ~-~~f~~l~~~el~~~L~-----------~ia~~Egi--~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 169 R-FDLQKIPTDKLVEHLV-----------DIAKKENI--EHDEESLKLIAENSS 208 (491)
T ss_pred e-eecccccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999998888 55667787 788999999998774
No 157
>KOG0651|consensus
Probab=99.50 E-value=3.4e-14 Score=155.71 Aligned_cols=182 Identities=26% Similarity=0.377 Sum_probs=140.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
+++.|.-..+..+.+.+..++..+.++.+.... +|..++||||||+|||.+|+++|..++.+|+.+.++++.+ +|.|+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk-~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~-kyiGE 209 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIK-PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD-KYIGE 209 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCC-CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-hhccc
Confidence 477888888999999888777777666654332 4689999999999999999999999999999999999988 59999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..++++.|+.+
T Consensus 210 s-aRlIRemf~yA------------------------------------------------------------------- 221 (388)
T KOG0651|consen 210 S-ARLIRDMFRYA------------------------------------------------------------------- 221 (388)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 67777777663
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.++ .+||
T Consensus 222 -----------------------------------------------------------------------~~~--~pci 228 (388)
T KOG0651|consen 222 -----------------------------------------------------------------------REV--IPCI 228 (388)
T ss_pred -----------------------------------------------------------------------hhh--CceE
Confidence 011 4699
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||+||||.+..+..+ ...++..-||+.|..++++-. |.=....+=.|+|| ++|+.|.|+|+ ||++..
T Consensus 229 ifmdeiDAigGRr~s--e~Ts~dreiqrTLMeLlnqmd-----gfd~l~rVk~Imat----NrpdtLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFS--EGTSSDREIQRTLMELLNQMD-----GFDTLHRVKTIMAT----NRPDTLDPALLRPGRLDRK 297 (388)
T ss_pred EeehhhhhhccEEec--cccchhHHHHHHHHHHHHhhc-----cchhcccccEEEec----CCccccchhhcCCccccce
Confidence 999999999987643 233445569999888776311 11112234467886 68999999998 899999
Q ss_pred EecCCCCHHHHHHHHhhh
Q psy2392 501 VELDSLSISDFTRIMTST 518 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~ 518 (1165)
++.+-+++.....|++.+
T Consensus 298 ~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 298 VEIPLPNEQARLGILKIH 315 (388)
T ss_pred eccCCcchhhceeeEeec
Confidence 999988888777777644
No 158
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.1e-13 Score=169.32 Aligned_cols=93 Identities=17% Similarity=0.317 Sum_probs=75.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .++.||..||.. -+|+.||++. ++|..+.+.+++||-
T Consensus 119 k~KVIIIDEad~Ls~~-------------A~NALLKtLEEP----------p~~v~fILaT----td~~kL~~TIrSRC~ 171 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPHKVPVTVLSRCL 171 (709)
T ss_pred CcEEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccchHHHHHHh
Confidence 3469999999998654 678999999952 2455666664 468889999999994
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|++++.+++.+.|. .++..+|+ .+++++++.|++.|-
T Consensus 172 -~f~f~~Ls~eeI~~~L~-----------~Il~kEgi--~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 172 -QFVLRNMTAQQVADHLA-----------HVLDSEKI--AYEPPALQLLGRAAA 211 (709)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHhC
Confidence 46899999999998888 56777887 689999999999875
No 159
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=2.3e-13 Score=166.03 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=98.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee---ceee---------------cCceEEEEEeCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK---YGII---------------KTDHILFIASGA 480 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~---~~~~---------------~t~~ilfI~~ga 480 (1165)
.+|++||||||++.+. .|+.||..+|...+... |... -+.++.+|+++
T Consensus 175 ~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~AT- 240 (531)
T TIGR02902 175 HGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGAT- 240 (531)
T ss_pred CCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEe-
Confidence 5899999999999877 67799999986554321 1000 12234456553
Q ss_pred cccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCc
Q psy2392 481 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 560 (1165)
Q Consensus 481 f~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~ 560 (1165)
+..|+.+.|+|++|+.. +.|.+|+.+++.+|++ . .+...+ +.+++++++.|+.++.
T Consensus 241 --t~~p~~L~paLrsR~~~-I~f~pL~~eei~~Il~----~-------~a~k~~--i~is~~al~~I~~y~~-------- 296 (531)
T TIGR02902 241 --TRNPEEIPPALRSRCVE-IFFRPLLDEEIKEIAK----N-------AAEKIG--INLEKHALELIVKYAS-------- 296 (531)
T ss_pred --cCCcccCChHHhhhhhe-eeCCCCCHHHHHHHHH----H-------HHHHcC--CCcCHHHHHHHHHhhh--------
Confidence 35788999999999864 6899999999999984 1 222334 5789999999887652
Q ss_pred cCcchhHHHHHHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 561 IGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 561 ~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
..|.+.++++.+..-...+ ....|+.+.+.+.++.
T Consensus 297 -n~Rel~nll~~Aa~~A~~~---~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 297 -NGREAVNIVQLAAGIALGE---GRKRILAEDIEWVAEN 331 (531)
T ss_pred -hHHHHHHHHHHHHHHHhhC---CCcEEcHHHHHHHhCC
Confidence 3599999998876433221 2256888888888764
No 160
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.49 E-value=9.7e-14 Score=179.59 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--cc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 1094 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR 1094 (1165)
+++||||||||.|+...+ +.-.-..||..|.|.. +...+.+|++|||+. .|..+.|+|+ ||
T Consensus 1732 SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~-----~~~s~~~VIVIAATN----RPD~LDPALLRPGR 1794 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDC-----ERCSTRNILVIASTH----IPQKVDPALIAPNK 1794 (2281)
T ss_pred CCeEEEEEchhhcCCCcc--------ceehHHHHHHHhcccc-----ccCCCCCEEEEEeCC----CcccCCHhHcCCCC
Confidence 689999999999987622 1111235666666521 123577899999974 8999999999 59
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+-.|.+..++..+-.+++.
T Consensus 1795 FDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1795 LNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred CCeEEEeCCCCchhHHHHHH
Confidence 99999998888766666654
No 161
>KOG0989|consensus
Probab=99.48 E-value=1.3e-13 Score=151.57 Aligned_cols=106 Identities=27% Similarity=0.338 Sum_probs=83.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|++|||.|.++.. .|.+|+..||....+| .||.- .+.++.+++.+.+|+.
T Consensus 129 ~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s~~t----------rFiLI----cnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSD-------------AQAALRRTMEDFSRTT----------RFILI----CNYLSRIIRPLVSRCQ 181 (346)
T ss_pred cceEEEEechhhhhHH-------------HHHHHHHHHhccccce----------EEEEE----cCChhhCChHHHhhHH
Confidence 5689999999999876 6779999999754333 33332 2357789999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
-+ .|++|..++....|. .+...||+ .+++++++.|++.+ .++-|+.-+.++++
T Consensus 182 Kf-rFk~L~d~~iv~rL~-----------~Ia~~E~v--~~d~~al~~I~~~S--------~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 182 KF-RFKKLKDEDIVDRLE-----------KIASKEGV--DIDDDALKLIAKIS--------DGDLRRAITTLQSL 234 (346)
T ss_pred Hh-cCCCcchHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHh
Confidence 75 899999999888884 33456777 78899999999988 56788888888776
No 162
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.8e-13 Score=172.82 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=75.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.|+||||+|+|+.. .|+.||++||.. ..|++||+.. +++..|++.|++||-
T Consensus 120 ~~KV~IIDEad~lt~~-------------a~NaLLK~LEEp----------P~~~~fIl~t----t~~~kLl~TIrSRc~ 172 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQ-------------GFNALLKIVEEP----------PEHLKFIFAT----TEPDKVIGTIRSRTH 172 (824)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CChhhhhHHHHhhee
Confidence 4569999999999875 788999999962 3567787764 466679999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+|+.+++.++|. .+++.+|+ .++++++..|++.+-
T Consensus 173 ~-v~F~~l~~~~l~~~L~-----------~il~~EGv--~id~eal~lLa~~sg 212 (824)
T PRK07764 173 H-YPFRLVPPEVMRGYLE-----------RICAQEGV--PVEPGVLPLVIRAGG 212 (824)
T ss_pred E-EEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 6 5999999999998888 56677787 578999988887764
No 163
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=4.5e-13 Score=163.23 Aligned_cols=124 Identities=18% Similarity=0.280 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .|+.||+.+|.. ..+++||++. +++..+.+.|++|+.
T Consensus 119 ~~kVIIIDEad~Lt~~-------------a~naLLk~LEEP----------~~~~ifILaT----t~~~kll~TI~SRcq 171 (624)
T PRK14959 119 RYKVFIIDEAHMLTRE-------------AFNALLKTLEEP----------PARVTFVLAT----TEPHKFPVTIVSRCQ 171 (624)
T ss_pred CceEEEEEChHhCCHH-------------HHHHHHHHhhcc----------CCCEEEEEec----CChhhhhHHHHhhhh
Confidence 5679999999999755 567999999852 2456666653 467778889999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++|+.+++.++|. ..+..+|+ .+++++++.|++.+ ++++|.+.+.+++++..
T Consensus 172 ~-i~F~pLs~~eL~~~L~-----------~il~~egi--~id~eal~lIA~~s--------~GdlR~Al~lLeqll~~-- 227 (624)
T PRK14959 172 H-FTFTRLSEAGLEAHLT-----------KVLGREGV--DYDPAAVRLIARRA--------AGSVRDSMSLLGQVLAL-- 227 (624)
T ss_pred c-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 5 6999999999999884 23445554 68999999999977 56799999999987521
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.+ -.||.+.|++.++
T Consensus 228 ---g~--~~It~d~V~~~lg 242 (624)
T PRK14959 228 ---GE--SRLTIDGARGVLG 242 (624)
T ss_pred ---cC--CCcCHHHHHHHhC
Confidence 11 1477777766554
No 164
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.46 E-value=2.3e-13 Score=166.01 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=77.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee---eeec---------------cCceEEEEecCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK---YGII---------------KTDHILFIASGA 1078 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k---~~~~---------------~t~~ilfI~~ga 1078 (1165)
+.|++||||||.+... +|+.||..+|...+... |... .+.++.+|++++
T Consensus 175 ~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt 241 (531)
T TIGR02902 175 HGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATT 241 (531)
T ss_pred CCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEec
Confidence 6799999999999876 89999999987544321 1111 123345666655
Q ss_pred CCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1079 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1079 f~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
..|+.+.|+|++||.. +.|++|+.+|+.+|++ ..++..|+ .+++++++.|+..+.
T Consensus 242 ---~~p~~L~paLrsR~~~-I~f~pL~~eei~~Il~-----------~~a~k~~i--~is~~al~~I~~y~~ 296 (531)
T TIGR02902 242 ---RNPEEIPPALRSRCVE-IFFRPLLDEEIKEIAK-----------NAAEKIGI--NLEKHALELIVKYAS 296 (531)
T ss_pred ---CCcccCChHHhhhhhe-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHhhh
Confidence 6789999999999865 6899999999999998 23333454 789999998887654
No 165
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=3.7e-13 Score=163.87 Aligned_cols=124 Identities=19% Similarity=0.299 Sum_probs=93.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|+++.. .++.||..+|.. ..++.||+++ ++|..+.+.+++|+-
T Consensus 119 ~~kVvIIDEad~ls~~-------------a~naLLK~LEep----------p~~~~fIL~t----~d~~kil~tI~SRc~ 171 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRCL 171 (527)
T ss_pred CceEEEEcCcccCCHH-------------HHHHHHHHHhCC----------CCCEEEEEEe----CChhhCchhHHHHHH
Confidence 5679999999999764 566999999862 3566777764 567788888999985
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.|. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 ~-~~f~~l~~~~i~~~L~-----------~il~~egi--~~~~~al~~la~~s--------~Gslr~al~lldqai~--- 226 (527)
T PRK14969 172 Q-FNLKQMPPPLIVSHLQ-----------HILEQENI--PFDATALQLLARAA--------AGSMRDALSLLDQAIA--- 226 (527)
T ss_pred H-HhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 4 6999999999888773 33455675 68999999999877 5678999999998864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . -.|+.+.|++.++
T Consensus 227 ~~--~--~~I~~~~v~~~~~ 242 (527)
T PRK14969 227 YG--G--GTVNESEVRAMLG 242 (527)
T ss_pred hc--C--CCcCHHHHHHHHC
Confidence 21 1 2366666666544
No 166
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.8e-13 Score=165.49 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=76.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||+.+|. ...|+.||++. ++|+.++|.+++|+-
T Consensus 118 ~~KVvIIDEah~Lt~~-------------A~NALLK~LEE----------pp~~~~fIL~t----te~~kll~TI~SRc~ 170 (584)
T PRK14952 118 RYRIFIVDEAHMVTTA-------------GFNALLKIVEE----------PPEHLIFIFAT----TEPEKVLPTIRSRTH 170 (584)
T ss_pred CceEEEEECCCcCCHH-------------HHHHHHHHHhc----------CCCCeEEEEEe----CChHhhHHHHHHhce
Confidence 4569999999999765 78999999995 23567788765 467899999999976
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+++|.+++.+++.+.|. .+++.+|+ .++++++..|++.+-.
T Consensus 171 -~~~F~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 171 -HYPFRLLPPRTMRALIA-----------RICEQEGV--VVDDAVYPLVIRAGGG 211 (584)
T ss_pred -EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999988887 56677787 6789999999886653
No 167
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.6e-13 Score=164.04 Aligned_cols=124 Identities=21% Similarity=0.367 Sum_probs=95.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|+++.. .++.||+.||. ..+|++||+++ ++|..+.+.+++|+.
T Consensus 119 ~~KVvIIdev~~Lt~~-------------a~naLLk~LEe----------pp~~~~fIl~t----~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 119 RYKIFIIDEVHMLSTN-------------AFNALLKTLEE----------PPPHVKFIFAT----TEPHKVPITILSRCQ 171 (576)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHHHHc----------CCCCeEEEEEe----CChhhhhHHHHHhhh
Confidence 5789999999999865 56799999996 24577787764 567889999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+|.|++++.+++.+.|. ..++.+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 172 -~~~f~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~la~~a--------~G~lr~al~~Ldqlia--- 226 (576)
T PRK14965 172 -RFDFRRIPLQKIVDRLR-----------YIADQEGI--SISDAALALVARKG--------DGSMRDSLSTLDQVLA--- 226 (576)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 46999999999888773 33455665 67899999999988 5788999999998864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|.. + .||.+.|...++
T Consensus 227 y~g-~---~It~edV~~llG 242 (576)
T PRK14965 227 FCG-D---AVGDDDVAELLG 242 (576)
T ss_pred hcc-C---CCCHHHHHHHhC
Confidence 221 1 266666665544
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=9.2e-13 Score=161.50 Aligned_cols=124 Identities=21% Similarity=0.395 Sum_probs=95.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.++.. .++.||..+|.. ..|++||.++ +.|..+.|.+++|+.
T Consensus 119 ~~kViIIDE~~~Lt~~-------------a~naLLKtLEep----------p~~~ifIlat----t~~~ki~~tI~SRc~ 171 (559)
T PRK05563 119 KYKVYIIDEVHMLSTG-------------AFNALLKTLEEP----------PAHVIFILAT----TEPHKIPATILSRCQ 171 (559)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChhhCcHHHHhHhe
Confidence 5789999999999754 566999999862 4577788764 467889999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|.+++.+++.++|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 ~-~~f~~~~~~ei~~~L~-----------~i~~~egi--~i~~~al~~ia~~s--------~G~~R~al~~Ldq~~~--- 226 (559)
T PRK05563 172 R-FDFKRISVEDIVERLK-----------YILDKEGI--EYEDEALRLIARAA--------EGGMRDALSILDQAIS--- 226 (559)
T ss_pred E-EecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999988883 33445666 67899999999877 5789999999998864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . -.||.+.|.+.++
T Consensus 227 ~~-~---~~It~~~V~~vlg 242 (559)
T PRK05563 227 FG-D---GKVTYEDALEVTG 242 (559)
T ss_pred hc-c---CCCCHHHHHHHhC
Confidence 32 1 1377777766554
No 169
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3e-13 Score=164.66 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=75.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.+|.. .+++.||+++ ++|..+.+.+++||-
T Consensus 119 ~~kVvIIDEad~ls~~-------------a~naLLK~LEep----------p~~~~fIL~t----~d~~kil~tI~SRc~ 171 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRCL 171 (527)
T ss_pred CceEEEEcCcccCCHH-------------HHHHHHHHHhCC----------CCCEEEEEEe----CChhhCchhHHHHHH
Confidence 3569999999999765 688999999963 2456677764 578888889999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.|. ..++.+|+ .++++|++.|++.+-
T Consensus 172 ~-~~f~~l~~~~i~~~L~-----------~il~~egi--~~~~~al~~la~~s~ 211 (527)
T PRK14969 172 Q-FNLKQMPPPLIVSHLQ-----------HILEQENI--PFDATALQLLARAAA 211 (527)
T ss_pred H-HhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999988887 55667786 688999999998764
No 170
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.2e-12 Score=161.50 Aligned_cols=124 Identities=18% Similarity=0.322 Sum_probs=95.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.+++. .++.||..+|. ...+++||+++ ++|..+.|.+++|+.
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLEE----------PP~~tifILaT----te~~KLl~TI~SRcq 170 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLEE----------PPKHVIFILAT----TEVHKIPLTILSRVQ 170 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhhc----------CCCceEEEEEc----CChhhhhHHHHhhce
Confidence 5789999999999754 67799999996 24567787764 467889999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+|+.+++.++|. ..+..+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 171 -~ieF~~L~~eeI~~~L~-----------~il~kegI--~id~eAl~~LA~lS--------~GslR~AlslLekl~~--- 225 (725)
T PRK07133 171 -RFNFRRISEDEIVSRLE-----------FILEKENI--SYEKNALKLIAKLS--------SGSLRDALSIAEQVSI--- 225 (725)
T ss_pred -eEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 67999999999998884 23445564 67899999999887 5778999999998742
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. .. .||.+.|++.++
T Consensus 226 y~--~~--~It~e~V~ellg 241 (725)
T PRK07133 226 FG--NN--KITLKNVEELFG 241 (725)
T ss_pred hc--cC--CCCHHHHHHHHc
Confidence 32 11 267776766554
No 171
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=5.1e-13 Score=162.77 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=74.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .|+.||+.+|.. ..++.||++. ++|..+.+.|++||-
T Consensus 119 ~~kVIIIDEad~Lt~~-------------a~naLLk~LEEP----------~~~~ifILaT----t~~~kll~TI~SRcq 171 (624)
T PRK14959 119 RYKVFIIDEAHMLTRE-------------AFNALLKTLEEP----------PARVTFVLAT----TEPHKFPVTIVSRCQ 171 (624)
T ss_pred CceEEEEEChHhCCHH-------------HHHHHHHHhhcc----------CCCEEEEEec----CChhhhhHHHHhhhh
Confidence 3569999999999765 788999999852 2356666653 367788889999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+ ++|++|+.+++.++|. ..+..+|+ .+++++++.|++.+..
T Consensus 172 ~-i~F~pLs~~eL~~~L~-----------~il~~egi--~id~eal~lIA~~s~G 212 (624)
T PRK14959 172 H-FTFTRLSEAGLEAHLT-----------KVLGREGV--DYDPAAVRLIARRAAG 212 (624)
T ss_pred c-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 5 6999999999999988 34566676 6789999999987753
No 172
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.4e-12 Score=157.81 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=92.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.+... .++.||..+|.. ..+++||.++ ++|..+.|.+.+|+.
T Consensus 116 ~~kVVIIDEad~ls~~-------------a~naLLk~LEep----------~~~t~~Il~t----~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 116 GRKVYILDEAHMMSKS-------------AFNALLKTLEEP----------PEHVIFILAT----TEPEKMPPTILSRTQ 168 (504)
T ss_pred CCeEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCEEEEEEc----CChhhCChHHhcceE
Confidence 5679999999988643 566899988852 3455666553 467789999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 169 -~~~f~~ls~~el~~~L~-----------~i~~~egi--~i~~~Al~~ia~~s--------~GdlR~aln~Lekl~~--- 223 (504)
T PRK14963 169 -HFRFRRLTEEEIAGKLR-----------RLLEAEGR--EAEPEALQLVARLA--------DGAMRDAESLLERLLA--- 223 (504)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 47999999999998883 33455676 56899999999988 6789999999999864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+ . -.||.+.|.+.++
T Consensus 224 ~--~---~~It~~~V~~~l~ 238 (504)
T PRK14963 224 L--G---TPVTRKQVEEALG 238 (504)
T ss_pred c--C---CCCCHHHHHHHHC
Confidence 2 1 1377777666544
No 173
>KOG0741|consensus
Probab=99.44 E-value=8.7e-14 Score=160.50 Aligned_cols=149 Identities=29% Similarity=0.418 Sum_probs=114.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC-CeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA-PFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~-~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~ 894 (1165)
.+++|||||||||||.+||.+.+.++. +--.++++++.++ |||+++ ..+|+||..|....
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~K-YVGeSE-~NvR~LFaDAEeE~----------------- 316 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK-YVGESE-ENVRKLFADAEEEQ----------------- 316 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHH-hhcccH-HHHHHHHHhHHHHH-----------------
Confidence 589999999999999999999999963 3456899999999 999995 45999997761110
Q ss_pred HHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhh
Q psy2392 895 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974 (1165)
Q Consensus 895 ~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1165)
T Consensus 317 -------------------------------------------------------------------------------- 316 (744)
T KOG0741|consen 317 -------------------------------------------------------------------------------- 316 (744)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC--CeeeehhhhhhhccCCCCCC-CCccchhhhhhcc
Q psy2392 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN--GIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLL 1051 (1165)
Q Consensus 975 ~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--gIvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL 1051 (1165)
+...++. -||++||||.||+.+.+..| +.+.. -|-+.||
T Consensus 317 -------------------------------------r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD-~VVNQLL 358 (744)
T KOG0741|consen 317 -------------------------------------RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHD-TVVNQLL 358 (744)
T ss_pred -------------------------------------HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccH-HHHHHHH
Confidence 0011122 38999999999999766444 44433 3667788
Q ss_pred ccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh---ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1052 PLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ---GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1052 ~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~---gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
.=|+| +-.-+|||.|+.+ +.-||+.|-+ |||.+-+++.-+++.-..|||+
T Consensus 359 sKmDG--------VeqLNNILVIGMT-----NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~ 411 (744)
T KOG0741|consen 359 SKMDG--------VEQLNNILVIGMT-----NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILK 411 (744)
T ss_pred Hhccc--------HHhhhcEEEEecc-----CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEE
Confidence 87884 5566899999985 3557775544 8999999999999999988887
No 174
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.43 E-value=2.2e-13 Score=134.64 Aligned_cols=72 Identities=28% Similarity=0.517 Sum_probs=53.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-ccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~-gR~~ 1096 (1165)
++|+||||+|++.... . .........+++.|+..++...-. ..++++|+++. .++.+.|.|+ +||.
T Consensus 59 ~~vl~iDe~d~l~~~~-~-~~~~~~~~~~~~~L~~~l~~~~~~-------~~~~~vI~ttn----~~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS-Q-PSSSSFEQRLLNQLLSLLDNPSSK-------NSRVIVIATTN----SPDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHC-S-TSSSHHHHHHHHHHHHHHHTTTTT-------SSSEEEEEEES----SGGGSCHHHHSTTSE
T ss_pred ceeeeeccchhccccc-c-cccccccccccceeeecccccccc-------cccceeEEeeC----ChhhCCHhHHhCCCc
Confidence 6899999999999986 2 122333445777888888864322 35688988875 5888999999 9999
Q ss_pred eEEEcC
Q psy2392 1097 IRVELD 1102 (1165)
Q Consensus 1097 i~v~l~ 1102 (1165)
.+++++
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 998875
No 175
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.43 E-value=1.2e-12 Score=163.08 Aligned_cols=177 Identities=29% Similarity=0.453 Sum_probs=126.3
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
++.|.+.+++.+.+.+... +.......... ..|.+++|+||||||||++|+++|+.++.+|+.++++++.+. |+|..
T Consensus 153 di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~-~~g~~ 229 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYL-REPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVG 229 (644)
T ss_pred HHcCHHHHHHHHHHHHHHh-hCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh-hhccc
Confidence 6778888888887766531 11111111111 124689999999999999999999999999999999887653 55554
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEE
Q psy2392 264 VDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEI 343 (1165)
Q Consensus 264 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i 343 (1165)
...++++|..+
T Consensus 230 -~~~~~~~f~~a-------------------------------------------------------------------- 240 (644)
T PRK10733 230 -ASRVRDMFEQA-------------------------------------------------------------------- 240 (644)
T ss_pred -HHHHHHHHHHH--------------------------------------------------------------------
Confidence 22233333321
Q ss_pred EEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEE
Q psy2392 344 EIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGII 423 (1165)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ii 423 (1165)
.. ..++||
T Consensus 241 ----------------------------------------------------------------------~~--~~P~Ii 248 (644)
T PRK10733 241 ----------------------------------------------------------------------KK--AAPCII 248 (644)
T ss_pred ----------------------------------------------------------------------Hh--cCCcEE
Confidence 00 147899
Q ss_pred EEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 424 FLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 424 fiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||||||.+...+..+. +....++.+.+.||..+||-. ..+.++||+++ +.|..+.|+|+ |||+..
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~--------~~~~vivIaaT----N~p~~lD~Al~RpgRfdr~ 316 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDRQ 316 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc--------CCCCeeEEEec----CChhhcCHHHhCCcccceE
Confidence 9999999998765422 233344556677888888732 34568888884 57899999998 699999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
|.+..++.+++.+|++
T Consensus 317 i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 317 VVVGLPDVRGREQILK 332 (644)
T ss_pred EEcCCCCHHHHHHHHH
Confidence 9999999999999984
No 176
>KOG0991|consensus
Probab=99.43 E-value=2e-13 Score=144.29 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=78.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||++||.|.++. |.|++|...||=.+-+|+| ++.++....++.++|+||.+
T Consensus 114 hKIiILDEADSMT~-------------gAQQAlRRtMEiyS~ttRF--------------alaCN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 114 HKIIILDEADSMTA-------------GAQQALRRTMEIYSNTTRF--------------ALACNQSEKIIEPIQSRCAI 166 (333)
T ss_pred eeEEEeeccchhhh-------------HHHHHHHHHHHHHcccchh--------------hhhhcchhhhhhhHHhhhHh
Confidence 35999999999976 4999999999987777776 55556667899999999998
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE 1157 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ 1157 (1165)
+.|..|+..++.+-|. +..+.|+| .+|+|++++|...|...=+.+.
T Consensus 167 -LRysklsd~qiL~Rl~-----------~v~k~Ekv--~yt~dgLeaiifta~GDMRQal 212 (333)
T KOG0991|consen 167 -LRYSKLSDQQILKRLL-----------EVAKAEKV--NYTDDGLEAIIFTAQGDMRQAL 212 (333)
T ss_pred -hhhcccCHHHHHHHHH-----------HHHHHhCC--CCCcchHHHhhhhccchHHHHH
Confidence 5999999998877666 55666777 6789999999887765434333
No 177
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.5e-12 Score=157.90 Aligned_cols=107 Identities=19% Similarity=0.333 Sum_probs=84.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...+++||+++ +.|..+.|.+++|+.
T Consensus 119 ~~KVIIIDEad~Lt~~-------------A~NaLLKtLEE----------Pp~~tvfIL~T----t~~~KLl~TI~SRcq 171 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-------------AWNALLKTLEE----------PPKHVVFIFAT----TEFQKIPLTIISRCQ 171 (605)
T ss_pred CcEEEEEechHhCCHH-------------HHHHHHHHHHh----------CCCcEEEEEEC----CChHhhhHHHHhhhh
Confidence 5789999999999754 56799999985 23466777664 457789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+ +.|.+|+.+++...|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++.
T Consensus 172 ~-ieF~~Ls~~eL~~~L~-----------~il~kegi--~Is~eal~~La~lS--------~GdlR~AlnlLekL~ 225 (605)
T PRK05896 172 R-YNFKKLNNSELQELLK-----------SIAKKEKI--KIEDNAIDKIADLA--------DGSLRDGLSILDQLS 225 (605)
T ss_pred h-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Confidence 5 7999999999998883 23344565 67899999999887 567999999999864
No 178
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=8.5e-13 Score=162.93 Aligned_cols=94 Identities=17% Similarity=0.346 Sum_probs=76.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||..+|.. .++++||+++ ++|..+.|.+++||-
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLEEP----------P~~tifILaT----te~~KLl~TI~SRcq 170 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLEEP----------PKHVIFILAT----TEVHKIPLTILSRVQ 170 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhhcC----------CCceEEEEEc----CChhhhhHHHHhhce
Confidence 4569999999999764 788999999953 3566788776 478889999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+++|.+|+.+++.++|. ..+..+|+ .++++|++.||..|-.
T Consensus 171 -~ieF~~L~~eeI~~~L~-----------~il~kegI--~id~eAl~~LA~lS~G 211 (725)
T PRK07133 171 -RFNFRRISEDEIVSRLE-----------FILEKENI--SYEKNALKLIAKLSSG 211 (725)
T ss_pred -eEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 67999999999999888 45566776 6789999999887753
No 179
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=8.3e-13 Score=159.66 Aligned_cols=93 Identities=23% Similarity=0.378 Sum_probs=73.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||..+|.. ..++.||.++ ++|..+.|.+++|+.
T Consensus 116 ~~kVVIIDEad~ls~~-------------a~naLLk~LEep----------~~~t~~Il~t----~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 116 GRKVYILDEAHMMSKS-------------AFNALLKTLEEP----------PEHVIFILAT----TEPEKMPPTILSRTQ 168 (504)
T ss_pred CCeEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCEEEEEEc----CChhhCChHHhcceE
Confidence 4569999999988643 688999999852 2345566553 467889999999988
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|.+|+.+++.+.|. ..++.+|+ .++++|+..|++.+-
T Consensus 169 ~-~~f~~ls~~el~~~L~-----------~i~~~egi--~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 169 H-FRFRRLTEEEIAGKLR-----------RLLEAEGR--EAEPEALQLVARLAD 208 (504)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999998888 55667787 568999999998764
No 180
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.7e-13 Score=163.35 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=76.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|++... .|+.||+.||.. .+|+.||++. ++|+.+.+.+++||-
T Consensus 119 ~~KVvIIdev~~Lt~~-------------a~naLLk~LEep----------p~~~~fIl~t----~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 119 RYKIFIIDEVHMLSTN-------------AFNALLKTLEEP----------PPHVKFIFAT----TEPHKVPITILSRCQ 171 (576)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHHHHcC----------CCCeEEEEEe----CChhhhhHHHHHhhh
Confidence 4569999999999865 788999999953 3567777665 578889999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. ++|++++.+++.+.|. ..++.+|+ .++++++..|++.+-.
T Consensus 172 ~-~~f~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~la~~a~G 212 (576)
T PRK14965 172 R-FDFRRIPLQKIVDRLR-----------YIADQEGI--SISDAALALVARKGDG 212 (576)
T ss_pred h-hhcCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcCC
Confidence 4 7999999999988887 55667787 6789999999887653
No 181
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.2e-12 Score=155.71 Aligned_cols=124 Identities=19% Similarity=0.332 Sum_probs=94.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.+++. .|+.||..+|. ...++.||.++ +.|..+.|.+++|+.
T Consensus 117 ~~KVvIIDEad~Lt~~-------------A~NALLK~LEE----------pp~~t~FIL~t----td~~kL~~tI~SRc~ 169 (535)
T PRK08451 117 RFKIFIIDEVHMLTKE-------------AFNALLKTLEE----------PPSYVKFILAT----TDPLKLPATILSRTQ 169 (535)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHHhh----------cCCceEEEEEE----CChhhCchHHHhhce
Confidence 5679999999999765 67799999996 24566677664 457889999999976
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 170 -~~~F~~Ls~~ei~~~L~-----------~Il~~EGi--~i~~~Al~~Ia~~s--------~GdlR~alnlLdqai~--- 224 (535)
T PRK08451 170 -HFRFKQIPQNSIISHLK-----------TILEKEGV--SYEPEALEILARSG--------NGSLRDTLTLLDQAII--- 224 (535)
T ss_pred -eEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHH---
Confidence 57999999999888773 34556676 67899999999987 5789999999998763
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. .+ .||.+.|.+.++
T Consensus 225 ~~-~~---~It~~~V~~~lg 240 (535)
T PRK08451 225 YC-KN---AITESKVADMLG 240 (535)
T ss_pred hc-CC---CCCHHHHHHHhC
Confidence 22 11 366666665544
No 182
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.2e-12 Score=160.61 Aligned_cols=93 Identities=24% Similarity=0.471 Sum_probs=75.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .++.||+.+|.. ..|+.||+++ ++|..+.|.+++||-
T Consensus 119 ~~kViIIDE~~~Lt~~-------------a~naLLKtLEep----------p~~~ifIlat----t~~~ki~~tI~SRc~ 171 (559)
T PRK05563 119 KYKVYIIDEVHMLSTG-------------AFNALLKTLEEP----------PAHVIFILAT----TEPHKIPATILSRCQ 171 (559)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChhhCcHHHHhHhe
Confidence 3569999999999754 788999999963 3467788774 478889999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|.+++.+++.++|. ..++.+|+ .++++++..||+.+-
T Consensus 172 -~~~f~~~~~~ei~~~L~-----------~i~~~egi--~i~~~al~~ia~~s~ 211 (559)
T PRK05563 172 -RFDFKRISVEDIVERLK-----------YILDKEGI--EYEDEALRLIARAAE 211 (559)
T ss_pred -EEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 45667787 668999999998664
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.41 E-value=5.4e-13 Score=131.85 Aligned_cols=72 Identities=28% Similarity=0.520 Sum_probs=53.2
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh-CCCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFP 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~-~R~~ 498 (1165)
++||||||+|++....+. ........+++.|+..++...- ...++++|+++ +.++.+.|.|+ +||+
T Consensus 59 ~~vl~iDe~d~l~~~~~~--~~~~~~~~~~~~L~~~l~~~~~-------~~~~~~vI~tt----n~~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQP--SSSSFEQRLLNQLLSLLDNPSS-------KNSRVIVIATT----NSPDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHCST--SSSHHHHHHHHHHHHHHHTTTT-------TSSSEEEEEEE----SSGGGSCHHHHSTTSE
T ss_pred ceeeeeccchhccccccc--ccccccccccceeeeccccccc-------ccccceeEEee----CChhhCCHhHHhCCCc
Confidence 689999999999988721 2233344567788888886421 13568888885 45788999999 9999
Q ss_pred eeEecC
Q psy2392 499 IRVELD 504 (1165)
Q Consensus 499 ~~v~~~ 504 (1165)
.+++|+
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 998874
No 184
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.5e-12 Score=155.89 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=74.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||..+|.. .++++||++. +++..+.+.+++|+-
T Consensus 121 ~~kvvIIdead~lt~~-------------~~n~LLk~lEep----------~~~~~~Il~t----~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 121 RYKIYIIDEVHMLTKE-------------AFNSLLKTLEEP----------PQHVKFFLAT----TEIHKIPGTILSRCQ 173 (451)
T ss_pred CCEEEEEecHHhhCHH-------------HHHHHHHHhhcC----------CCCceEEEEe----CChHhcchHHHHhce
Confidence 4679999999999764 688999999962 2355666654 467789999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ |+|++|+.+++.+.|. ..++.+|+ .+++++++.|++.+-
T Consensus 174 ~-v~f~~l~~~el~~~L~-----------~~~~~eg~--~i~~~al~~L~~~s~ 213 (451)
T PRK06305 174 K-MHLKRIPEETIIDKLA-----------LIAKQEGI--ETSREALLPIARAAQ 213 (451)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 6 6999999999998887 44455676 678999999988764
No 185
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.6e-12 Score=157.16 Aligned_cols=124 Identities=17% Similarity=0.346 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...+++||++. +++..+.|.+++|+.
T Consensus 119 ~~KVvIIDEa~~Ls~~-------------a~naLLK~LEe----------pp~~~vfI~~t----te~~kL~~tI~SRc~ 171 (563)
T PRK06647 119 RYRVYIIDEVHMLSNS-------------AFNALLKTIEE----------PPPYIVFIFAT----TEVHKLPATIKSRCQ 171 (563)
T ss_pred CCEEEEEEChhhcCHH-------------HHHHHHHhhcc----------CCCCEEEEEec----CChHHhHHHHHHhce
Confidence 5789999999999754 56789999985 23567777663 456778899999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|.+|+.+++.+.|. ..+..+|+ .++++++++|++.+ +++.|.+.+.+++++.
T Consensus 172 ~-~~f~~l~~~el~~~L~-----------~i~~~egi--~id~eAl~lLa~~s--------~GdlR~alslLdklis--- 226 (563)
T PRK06647 172 H-FNFRLLSLEKIYNMLK-----------KVCLEDQI--KYEDEALKWIAYKS--------TGSVRDAYTLFDQVVS--- 226 (563)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 5 6999999999988884 22344565 67899999999877 5679999999998853
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . . .||.+.|++.++
T Consensus 227 ~~-~-~--~It~e~V~~llg 242 (563)
T PRK06647 227 FS-D-S--DITLEQIRSKMG 242 (563)
T ss_pred hc-C-C--CCCHHHHHHHhC
Confidence 21 1 1 266666655443
No 186
>KOG0732|consensus
Probab=99.41 E-value=1.4e-12 Score=163.21 Aligned_cols=225 Identities=22% Similarity=0.300 Sum_probs=166.0
Q ss_pred hHHHHHHHHhc-ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC-----CC
Q psy2392 172 LVIAEIVSELD-KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN-----AP 245 (1165)
Q Consensus 172 ~~~~~l~~~L~-~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~-----~~ 245 (1165)
.+|......+. +.|.|.++++..+.+.+..++.++.++..... .+|.++||+||||+|||..|+++|..+. ..
T Consensus 253 ~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis 331 (1080)
T KOG0732|consen 253 SDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI-TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS 331 (1080)
T ss_pred cCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc-CCCcceeecCCCCCchhHHHHhhhhhhcccccccc
Confidence 45555555555 68999999999999999998888887775443 3568999999999999999999999992 34
Q ss_pred ceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhh
Q psy2392 246 FIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNIST 325 (1165)
Q Consensus 246 ~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 325 (1165)
|+.-+.++.-+. |+|+. +..++.+|+.+
T Consensus 332 ffmrkgaD~lsk-wvgEa-ERqlrllFeeA-------------------------------------------------- 359 (1080)
T KOG0732|consen 332 FFMRKGADCLSK-WVGEA-ERQLRLLFEEA-------------------------------------------------- 359 (1080)
T ss_pred hhhhcCchhhcc-ccCcH-HHHHHHHHHHH--------------------------------------------------
Confidence 444444554444 88888 55677777663
Q ss_pred HHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcC
Q psy2392 326 RQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLN 405 (1165)
Q Consensus 326 ~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1165)
.+
T Consensus 360 ---------------------------------------------------------------------------~k--- 361 (1080)
T KOG0732|consen 360 ---------------------------------------------------------------------------QK--- 361 (1080)
T ss_pred ---------------------------------------------------------------------------hc---
Confidence 11
Q ss_pred hhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCC
Q psy2392 406 EDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK 485 (1165)
Q Consensus 406 ~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~ 485 (1165)
.++.|||+||||-+++.+..- .+--...+...||++|+|-. .+..+++|+|+ +.
T Consensus 362 ------------~qPSIIffdeIdGlapvrSsk--qEqih~SIvSTLLaLmdGld--------sRgqVvvigAT----nR 415 (1080)
T KOG0732|consen 362 ------------TQPSIIFFDEIDGLAPVRSSK--QEQIHASIVSTLLALMDGLD--------SRGQVVVIGAT----NR 415 (1080)
T ss_pred ------------cCceEEeccccccccccccch--HHHhhhhHHHHHHHhccCCC--------CCCceEEEccc----CC
Confidence 268999999999999876431 12223346668999999832 34466777774 68
Q ss_pred CCCCchhhh--CCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCc
Q psy2392 486 PSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563 (1165)
Q Consensus 486 p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GA 563 (1165)
|..+.|+|+ |||+..+.|.-++.++..+|+. +.+....-.+....+.+||+.... .+||
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~-------------Ihtrkw~~~i~~~l~~~la~~t~g------y~ga 476 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILD-------------IHTRKWEPPISRELLLWLAEETSG------YGGA 476 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHH-------------HhccCCCCCCCHHHHHHHHHhccc------cchH
Confidence 999999995 8999999999999999999984 233344446677888899887754 3555
Q ss_pred chhHHHHHHH
Q psy2392 564 RRLYTAMEKL 573 (1165)
Q Consensus 564 R~l~~~ie~~ 573 (1165)
- |+.+....
T Consensus 477 D-lkaLCTeA 485 (1080)
T KOG0732|consen 477 D-LKALCTEA 485 (1080)
T ss_pred H-HHHHHHHH
Confidence 5 77666544
No 187
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.2e-12 Score=158.72 Aligned_cols=93 Identities=19% Similarity=0.352 Sum_probs=73.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||..+|.. ..++.||+++ +.|..+.|.+++||-
T Consensus 119 ~~KVIIIDEad~Lt~~-------------A~NaLLKtLEEP----------p~~tvfIL~T----t~~~KLl~TI~SRcq 171 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-------------AWNALLKTLEEP----------PKHVVFIFAT----TEFQKIPLTIISRCQ 171 (605)
T ss_pred CcEEEEEechHhCCHH-------------HHHHHHHHHHhC----------CCcEEEEEEC----CChHhhhHHHHhhhh
Confidence 4579999999999654 688999999963 2456677655 367889999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+|+.+++...|. ..++.+|+ .++++++..|+..|-
T Consensus 172 ~-ieF~~Ls~~eL~~~L~-----------~il~kegi--~Is~eal~~La~lS~ 211 (605)
T PRK05896 172 R-YNFKKLNNSELQELLK-----------SIAKKEKI--KIEDNAIDKIADLAD 211 (605)
T ss_pred h-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999998888 44556676 678999999888764
No 188
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.40 E-value=1.5e-12 Score=162.35 Aligned_cols=178 Identities=29% Similarity=0.447 Sum_probs=128.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.++.|.+.+++.+.+.+... +......... ...+++++|+||||||||++++++++.++.||+.++++++.+. |+|.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~-~~g~ 228 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYL-REPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 228 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHh-hCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh-hhcc
Confidence 57889999988888776532 1111001111 1125789999999999999999999999999999999988765 7766
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..+.
T Consensus 229 ~~-~~~~~~f~~a~------------------------------------------------------------------ 241 (644)
T PRK10733 229 GA-SRVRDMFEQAK------------------------------------------------------------------ 241 (644)
T ss_pred cH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 53 23454443320
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..+++|
T Consensus 242 --------------------------------------------------------------------------~~~P~I 247 (644)
T PRK10733 242 --------------------------------------------------------------------------KAAPCI 247 (644)
T ss_pred --------------------------------------------------------------------------hcCCcE
Confidence 015689
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.++..+..+ .+....++.+-+.||..++|. ...+.++||++.+ .|+.+.|.|+ |||.-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~--------~~~~~vivIaaTN----~p~~lD~Al~RpgRfdr 315 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--------EGNEGIIVIAATN----RPDVLDPALLRPGRFDR 315 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc--------cCCCCeeEEEecC----ChhhcCHHHhCCcccce
Confidence 9999999999875432 222333444556777778753 2346788988864 7889999998 69999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.++.++.++..+||+
T Consensus 316 ~i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 316 QVVVGLPDVRGREQILK 332 (644)
T ss_pred EEEcCCCCHHHHHHHHH
Confidence 99999999999999998
No 189
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.1e-12 Score=158.40 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=76.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||+.+|.. ..|+.||.++ +.|..+.|.+++|+.
T Consensus 117 ~~KVvIIDEad~Lt~~-------------A~NALLK~LEEp----------p~~t~FIL~t----td~~kL~~tI~SRc~ 169 (535)
T PRK08451 117 RFKIFIIDEVHMLTKE-------------AFNALLKTLEEP----------PSYVKFILAT----TDPLKLPATILSRTQ 169 (535)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHHhhc----------CCceEEEEEE----CChhhCchHHHhhce
Confidence 3469999999999765 788999999963 3455666665 467889999999986
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+++|.+++.+++.+.|. ..+..+|+ .++++|++.|++.|-.
T Consensus 170 -~~~F~~Ls~~ei~~~L~-----------~Il~~EGi--~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 170 -HFRFKQIPQNSIISHLK-----------TILEKEGV--SYEPEALEILARSGNG 210 (535)
T ss_pred -eEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999988877 55677887 6789999999987654
No 190
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=4.8e-12 Score=151.62 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=92.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .++.||..+|.. ..+++||++. +++..+.+.+++|+.
T Consensus 121 ~~kvvIIdead~lt~~-------------~~n~LLk~lEep----------~~~~~~Il~t----~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 121 RYKIYIIDEVHMLTKE-------------AFNSLLKTLEEP----------PQHVKFFLAT----TEIHKIPGTILSRCQ 173 (451)
T ss_pred CCEEEEEecHHhhCHH-------------HHHHHHHHhhcC----------CCCceEEEEe----CChHhcchHHHHhce
Confidence 5789999999999754 567899999862 2355666553 466789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ |+|++|+.+++.+.|. ..++.+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 174 ~-v~f~~l~~~el~~~L~-----------~~~~~eg~--~i~~~al~~L~~~s--------~gdlr~a~~~Lekl~~--- 228 (451)
T PRK06305 174 K-MHLKRIPEETIIDKLA-----------LIAKQEGI--ETSREALLPIARAA--------QGSLRDAESLYDYVVG--- 228 (451)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 6 6999999999998873 22344565 57899999999888 5678999999988753
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. .+ .||.+.|.+.++
T Consensus 229 ~~-~~---~It~~~V~~l~~ 244 (451)
T PRK06305 229 LF-PK---SLDPDSVAKALG 244 (451)
T ss_pred hc-cC---CcCHHHHHHHHC
Confidence 21 11 266666655544
No 191
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.4e-12 Score=154.27 Aligned_cols=93 Identities=15% Similarity=0.305 Sum_probs=70.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .|+.||+.+|...- +..||+.+ +++..+.|.|++|+-
T Consensus 127 ~~kvvIIdea~~l~~~-------------~~~~LLk~LEep~~----------~t~~Il~t----~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-------------AFNAFLKTLEEPPP----------HAIFIFAT----TELHKIPATIASRCQ 179 (397)
T ss_pred CeEEEEEeChhhCCHH-------------HHHHHHHHHhcCCC----------CeEEEEEe----CChHHhHHHHHHHHH
Confidence 3469999999999864 67899999995322 33444433 346788999999987
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.+. ..++.+|+ .+++++++.|+..+-
T Consensus 180 ~-v~f~~l~~~ei~~~l~-----------~~~~~~g~--~i~~~al~~l~~~s~ 219 (397)
T PRK14955 180 R-FNFKRIPLEEIQQQLQ-----------GICEAEGI--SVDADALQLIGRKAQ 219 (397)
T ss_pred H-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999988887 44455666 688999999988764
No 192
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=4.8e-12 Score=155.52 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=94.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.++.. .++.||..+|.. ..++.||++. +++..+.+.+++|+.
T Consensus 132 ~~KVvIIDEad~Ls~~-------------a~naLLKtLEeP----------p~~~~fIl~t----te~~kll~tI~SRcq 184 (598)
T PRK09111 132 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEP----------PPHVKFIFAT----TEIRKVPVTVLSRCQ 184 (598)
T ss_pred CcEEEEEEChHhCCHH-------------HHHHHHHHHHhC----------CCCeEEEEEe----CChhhhhHHHHhhee
Confidence 5789999999999754 466899999862 3456666553 456668889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++.+.|. +.+..+|+ .+++++++.|++.+ ++..|.+.+.+++++.
T Consensus 185 -~~~f~~l~~~el~~~L~-----------~i~~kegi--~i~~eAl~lIa~~a--------~Gdlr~al~~Ldkli~--- 239 (598)
T PRK09111 185 -RFDLRRIEADVLAAHLS-----------RIAAKEGV--EVEDEALALIARAA--------EGSVRDGLSLLDQAIA--- 239 (598)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 57999999999998884 33445565 67899999999987 5778999999998753
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+. . -.||.+.|++.++.
T Consensus 240 ~g-~---g~It~e~V~~llg~ 256 (598)
T PRK09111 240 HG-A---GEVTAEAVRDMLGL 256 (598)
T ss_pred hc-C---CCcCHHHHHHHhCC
Confidence 22 1 14888888876653
No 193
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.38 E-value=3.1e-12 Score=147.46 Aligned_cols=136 Identities=19% Similarity=0.317 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+|||||+|.+... .|+.|+.++|... .+..||.++ ++|+.+.|.|.+|+.
T Consensus 125 ~~~vlilDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~Il~~----~~~~~~~~~L~sr~~ 177 (337)
T PRK12402 125 DYKTILLDNAEALRED-------------AQQALRRIMEQYS----------RTCRFIIAT----RQPSKLIPPIRSRCL 177 (337)
T ss_pred CCcEEEEeCcccCCHH-------------HHHHHHHHHHhcc----------CCCeEEEEe----CChhhCchhhcCCce
Confidence 4579999999988643 4567888887421 122344443 246678889999974
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+++.+++..++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.+++....
T Consensus 178 -~v~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~al~~l~~~~--------~gdlr~l~~~l~~~~~~-- 233 (337)
T PRK12402 178 -PLFFRAPTDDELVDVLE-----------SIAEAEGV--DYDDDGLELIAYYA--------GGDLRKAILTLQTAALA-- 233 (337)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHc--
Confidence 57999999999988884 23445566 48999999999877 46688888877765411
Q ss_pred cccCCCeeEEcccccccccccCccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLSINEDLSRYDS 611 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~ 611 (1165)
. -.||.+.|++.+.......++..++.
T Consensus 234 -----~-~~It~~~v~~~~~~~~~~~~i~~l~~ 260 (337)
T PRK12402 234 -----A-GEITMEAAYEALGDVGTDEVIESLLD 260 (337)
T ss_pred -----C-CCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 1 14888888876665443344444443
No 194
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=3.7e-12 Score=150.70 Aligned_cols=128 Identities=15% Similarity=0.272 Sum_probs=89.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .|+.||..+|.. ..+.+||.++ +++..+.|.+++|+.
T Consensus 127 ~~kvvIIdea~~l~~~-------------~~~~LLk~LEep----------~~~t~~Il~t----~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-------------AFNAFLKTLEEP----------PPHAIFIFAT----TELHKIPATIASRCQ 179 (397)
T ss_pred CeEEEEEeChhhCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----CChHHhHHHHHHHHH
Confidence 5679999999999764 456899999852 2344455443 346678899999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ ++|++++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 180 ~-v~f~~l~~~ei~~~l~-----------~~~~~~g~--~i~~~al~~l~~~s--------~g~lr~a~~~L~kl~~--- 234 (397)
T PRK14955 180 R-FNFKRIPLEEIQQQLQ-----------GICEAEGI--SVDADALQLIGRKA--------QGSMRDAQSILDQVIA--- 234 (397)
T ss_pred H-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 4 7999999999988773 22334454 78999999999988 5678999999988752
Q ss_pred ccc-CCCeeEEcccccccccc
Q psy2392 579 FNS-NNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~-~~~~~~i~~~~v~~~~~ 598 (1165)
|.. .+..-.||.+.|++.+.
T Consensus 235 ~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred hccccCCCCccCHHHHHHHHC
Confidence 211 01112466666655443
No 195
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=7.4e-12 Score=154.09 Aligned_cols=128 Identities=16% Similarity=0.297 Sum_probs=91.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|+++.. .++.||..+|.. ..+++||... +++..+.|.+++|+.
T Consensus 127 ~~KVvIIdEad~Lt~~-------------a~naLLK~LEeP----------p~~tv~IL~t----~~~~kLl~TI~SRc~ 179 (620)
T PRK14954 127 RYRVYIIDEVHMLSTA-------------AFNAFLKTLEEP----------PPHAIFIFAT----TELHKIPATIASRCQ 179 (620)
T ss_pred CCEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CChhhhhHHHHhhce
Confidence 5779999999999754 466899999962 2345555442 356778899999986
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ |+|++++.+++...|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++. +
T Consensus 180 ~-vef~~l~~~ei~~~L~-----------~i~~~egi--~I~~eal~~La~~s--------~Gdlr~al~eLeKL~---~ 234 (620)
T PRK14954 180 R-FNFKRIPLDEIQSQLQ-----------MICRAEGI--QIDADALQLIARKA--------QGSMRDAQSILDQVI---A 234 (620)
T ss_pred E-EecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------CCCHHHHHHHHHHHH---H
Confidence 5 6999999999888773 33444564 67899999999988 577999999999875 2
Q ss_pred ccc-CCCeeEEcccccccccc
Q psy2392 579 FNS-NNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~-~~~~~~i~~~~v~~~~~ 598 (1165)
|.. .+..-.|+.+.|++.+.
T Consensus 235 y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 235 FSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred hccccccCCccCHHHHHHHHc
Confidence 321 01112466656655443
No 196
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.37 E-value=1.5e-12 Score=149.06 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=79.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...+|||||+|++... ..|..|..++|... .+..||+++ +.++.+.|.+.+||.
T Consensus 100 ~~~vliiDe~d~l~~~------------~~~~~L~~~le~~~----------~~~~~Ilt~----n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA------------DAQRHLRSFMEAYS----------KNCSFIITA----NNKNGIIEPLRSRCR 153 (316)
T ss_pred CCeEEEEECcccccCH------------HHHHHHHHHHHhcC----------CCceEEEEc----CChhhchHHHHhhce
Confidence 4579999999998332 15677888788532 233566554 366789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 1154 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~ 1154 (1165)
. +.|+.++.++...+++ .++++....++.+|+ .++++++..|++.+...++
T Consensus 154 ~-i~~~~p~~~~~~~il~----~~~~~~~~~~~~~~~--~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 154 V-IDFGVPTKEEQIEMMK----QMIVRCKGILEAEGV--EVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred E-EEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCCHH
Confidence 5 6899999999999988 466777778888888 6689999999987665433
No 197
>PRK04195 replication factor C large subunit; Provisional
Probab=99.37 E-value=2.4e-12 Score=156.03 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+.++|..+ ++++||+++++.+..++... . . + . ++.++||+||||||||++|+++|+.++.+++.+
T Consensus 6 eKyrP~~l-----~dlvg~~~~~~~l~~~l~~~-~-~----g-~---~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 6 EKYRPKTL-----SDVVGNEKAKEQLREWIESW-L-K----G-K---PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred hhcCCCCH-----HHhcCCHHHHHHHHHHHHHH-h-c----C-C---CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 57788777 78999999999999998653 1 1 1 1 147899999999999999999999999999999
Q ss_pred ecCCc
Q psy2392 848 EATKF 852 (1165)
Q Consensus 848 ~~se~ 852 (1165)
++++.
T Consensus 71 nasd~ 75 (482)
T PRK04195 71 NASDQ 75 (482)
T ss_pred ccccc
Confidence 99874
No 198
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.37 E-value=7.1e-12 Score=155.38 Aligned_cols=142 Identities=18% Similarity=0.289 Sum_probs=96.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece------------------eecCceEEEEEeCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG------------------IIKTDHILFIASGA 480 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~------------------~~~t~~ilfI~~ga 480 (1165)
..|++||||++.+.+. .|..|+..++...+....+ .....++++|++++
T Consensus 265 sgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 265 HGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 5789999999999766 6778999998765432100 01122455555532
Q ss_pred cccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCc
Q psy2392 481 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 560 (1165)
Q Consensus 481 f~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~ 560 (1165)
.+|+.+.|.|++||.. +.|.+|+.+|+..|+.. . +...+ +.+++++++.|++.+
T Consensus 332 ---~~~~~l~~aLrSR~~~-i~~~pls~edi~~Il~~----~-------a~~~~--v~ls~eal~~L~~ys--------- 385 (615)
T TIGR02903 332 ---RDPEEINPALRSRCAE-VFFEPLTPEDIALIVLN----A-------AEKIN--VHLAAGVEELIARYT--------- 385 (615)
T ss_pred ---ccccccCHHHHhceeE-EEeCCCCHHHHHHHHHH----H-------HHHcC--CCCCHHHHHHHHHCC---------
Confidence 4577899999999985 58999999999999951 1 22223 368899999998854
Q ss_pred cCcchhHHHHHHHHHHhhccc-----CCCeeEEccccccccccc
Q psy2392 561 IGARRLYTAMEKLLEEVSFNS-----NNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 561 ~GAR~l~~~ie~~l~~~~~~~-----~~~~~~i~~~~v~~~~~~ 599 (1165)
.++|+..+.++.+..-..+.. .+....|+.+.|++.++.
T Consensus 386 ~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 386 IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 246888888877653322211 112267888888887774
No 199
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=4.1e-12 Score=156.38 Aligned_cols=93 Identities=17% Similarity=0.324 Sum_probs=72.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||+.+|... .+..||+.. +++..+.|.+++|+-
T Consensus 127 ~~KVvIIdEad~Lt~~-------------a~naLLK~LEePp----------~~tv~IL~t----~~~~kLl~TI~SRc~ 179 (620)
T PRK14954 127 RYRVYIIDEVHMLSTA-------------AFNAFLKTLEEPP----------PHAIFIFAT----TELHKIPATIASRCQ 179 (620)
T ss_pred CCEEEEEeChhhcCHH-------------HHHHHHHHHhCCC----------CCeEEEEEe----CChhhhhHHHHhhce
Confidence 3569999999999764 6889999999632 234455433 356789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+++.+++...|. ..++.+|+ .+++++++.|++.+-
T Consensus 180 ~-vef~~l~~~ei~~~L~-----------~i~~~egi--~I~~eal~~La~~s~ 219 (620)
T PRK14954 180 R-FNFKRIPLDEIQSQLQ-----------MICRAEGI--QIDADALQLIARKAQ 219 (620)
T ss_pred E-EecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhC
Confidence 6 6999999999988777 45556676 678999999988764
No 200
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.2e-12 Score=151.09 Aligned_cols=124 Identities=18% Similarity=0.282 Sum_probs=92.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|+++.. .++.||..+|.. ..+++||.++ +++..+.+.+++|+.
T Consensus 119 ~~KVvIIDEad~Lt~~-------------a~naLLk~LEep----------p~~~v~Il~t----t~~~kl~~tI~SRc~ 171 (486)
T PRK14953 119 KYKVYIIDEAHMLTKE-------------AFNALLKTLEEP----------PPRTIFILCT----TEYDKIPPTILSRCQ 171 (486)
T ss_pred CeeEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEE----CCHHHHHHHHHHhce
Confidence 5679999999999754 456899998852 3455666553 356668889999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++...|. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 -~i~f~~ls~~el~~~L~-----------~i~k~egi--~id~~al~~La~~s--------~G~lr~al~~Ldkl~~--- 226 (486)
T PRK14953 172 -RFIFSKPTKEQIKEYLK-----------RICNEEKI--EYEEKALDLLAQAS--------EGGMRDAASLLDQAST--- 226 (486)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998883 33445565 78999999999876 5779999999998863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. + -.||.+.|++.++
T Consensus 227 ~~--~--~~It~~~V~~~lg 242 (486)
T PRK14953 227 YG--E--GKVTIKVVEEFLG 242 (486)
T ss_pred hc--C--CCcCHHHHHHHhC
Confidence 31 2 1477777776555
No 201
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=4.8e-12 Score=154.82 Aligned_cols=93 Identities=16% Similarity=0.302 Sum_probs=74.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||+.+|.. ..++.||++. ++|..+.|.|++|+-
T Consensus 119 ~~KVvIIDEa~~Ls~~-------------a~naLLK~LEep----------p~~~vfI~~t----te~~kL~~tI~SRc~ 171 (563)
T PRK06647 119 RYRVYIIDEVHMLSNS-------------AFNALLKTIEEP----------PPYIVFIFAT----TEVHKLPATIKSRCQ 171 (563)
T ss_pred CCEEEEEEChhhcCHH-------------HHHHHHHhhccC----------CCCEEEEEec----CChHHhHHHHHHhce
Confidence 4569999999999754 788999999952 2456777654 467788899999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|.+|+.+++.+.|. ..+..+|+ .++++|+..||+.+-
T Consensus 172 ~-~~f~~l~~~el~~~L~-----------~i~~~egi--~id~eAl~lLa~~s~ 211 (563)
T PRK06647 172 H-FNFRLLSLEKIYNMLK-----------KVCLEDQI--KYEDEALKWIAYKST 211 (563)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999988887 34455676 678999999998655
No 202
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=6.6e-12 Score=147.13 Aligned_cols=93 Identities=24% Similarity=0.468 Sum_probs=71.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .|+.||..+|.. ..+..||.++ ++++.+.|.+++|+.
T Consensus 108 ~~kiviIDE~~~l~~~-------------~~~~ll~~le~~----------~~~~~~Il~~----~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 108 KYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP----------PAHAIFILAT----TEKHKIIPTILSRCQ 160 (367)
T ss_pred CcEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCceEEEEEe----CCcccCCHHHHhcce
Confidence 3469999999998754 577899988852 2234455543 367789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++..++. ..+..+|+ .+++++++.|+..+-
T Consensus 161 ~-v~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~al~~l~~~~~ 200 (367)
T PRK14970 161 I-FDFKRITIKDIKEHLA-----------GIAVKEGI--KFEDDALHIIAQKAD 200 (367)
T ss_pred e-EecCCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhCC
Confidence 6 7999999999998888 44556677 678999999988653
No 203
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=6.2e-12 Score=146.16 Aligned_cols=93 Identities=20% Similarity=0.449 Sum_probs=71.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .++.||..+|... .++.||+++ ++|+.+.|.+++|+.
T Consensus 117 ~~~vviidea~~l~~~-------------~~~~Ll~~le~~~----------~~~~lIl~~----~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS-------------AFNALLKTLEEPP----------EHVVFILAT----TEPHKIPATILSRCQ 169 (355)
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHhCCc----------cceeEEEEe----CCHHHHHHHHHhhee
Confidence 3469999999999654 6788999998632 344555543 467778899999986
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.++|++++.+++.+++. ..++.+|+ .++++++..|++.+-
T Consensus 170 -~~~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 170 -RFDFKRIPLEDIVERLK-----------KILDKEGI--KIEDEALELIARAAD 209 (355)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999999888 34455676 678999999987664
No 204
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.7e-11 Score=143.62 Aligned_cols=107 Identities=21% Similarity=0.451 Sum_probs=81.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .++.||..+|.. ..+.+||.++ +++..+.|.+++|+.
T Consensus 108 ~~kiviIDE~~~l~~~-------------~~~~ll~~le~~----------~~~~~~Il~~----~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 108 KYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP----------PAHAIFILAT----TEKHKIIPTILSRCQ 160 (367)
T ss_pred CcEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCceEEEEEe----CCcccCCHHHHhcce
Confidence 4679999999988654 456888888752 2344455543 356788999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+ |+|++++.+++..++. ..+..+|+ .+++++++.|+..+ +++.|.+.+.++++.
T Consensus 161 ~-v~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~al~~l~~~~--------~gdlr~~~~~lekl~ 214 (367)
T PRK14970 161 I-FDFKRITIKDIKEHLA-----------GIAVKEGI--KFEDDALHIIAQKA--------DGALRDALSIFDRVV 214 (367)
T ss_pred e-EecCCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 5 7999999999998884 22344565 67899999999876 567999999999886
No 205
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.34 E-value=4.4e-12 Score=151.45 Aligned_cols=124 Identities=19% Similarity=0.335 Sum_probs=100.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|.+|||+|-+++. ..+.||..+|- ..+|+.||.++ ..|..+.+..++|+.
T Consensus 119 ryKVyiIDEvHMLS~~-------------afNALLKTLEE----------PP~hV~FIlAT----Te~~Kip~TIlSRcq 171 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------------AFNALLKTLEE----------PPSHVKFILAT----TEPQKIPNTILSRCQ 171 (515)
T ss_pred cceEEEEecHHhhhHH-------------HHHHHhccccc----------CccCeEEEEec----CCcCcCchhhhhccc
Confidence 5789999999999887 45599999986 67899999884 578889999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.. .|+.|+.+++..-| ...+..+|| .++++|+..|++.+ +++.|-..+++++++.-.
T Consensus 172 ~f-~fkri~~~~I~~~L-----------~~i~~~E~I--~~e~~aL~~ia~~a--------~Gs~RDalslLDq~i~~~- 228 (515)
T COG2812 172 RF-DFKRLDLEEIAKHL-----------AAILDKEGI--NIEEDALSLIARAA--------EGSLRDALSLLDQAIAFG- 228 (515)
T ss_pred cc-cccCCCHHHHHHHH-----------HHHHHhcCC--ccCHHHHHHHHHHc--------CCChhhHHHHHHHHHHcc-
Confidence 75 89999999888777 345566776 78899999999988 689999999999987431
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. -.||.+.|++.++
T Consensus 229 --~----~~It~~~v~~~lG 242 (515)
T COG2812 229 --E----GEITLESVRDMLG 242 (515)
T ss_pred --C----CcccHHHHHHHhC
Confidence 1 1377777776655
No 206
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.2e-11 Score=152.83 Aligned_cols=107 Identities=17% Similarity=0.371 Sum_probs=85.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|+++.. .|+.||..+|.. ..+.+||++. +++..+.|.+++|+.
T Consensus 121 ~~KVvIIdea~~Ls~~-------------a~naLLK~LEep----------p~~tifIL~t----t~~~kIl~tI~SRc~ 173 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA-------------AFNAFLKTLEEP----------PSYAIFILAT----TEKHKILPTILSRCQ 173 (614)
T ss_pred CcEEEEEECcccCCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CCchhchHHHHhhhh
Confidence 5779999999999754 577999999962 3455666653 356789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+ +.|++++.+++.+.|. ..+..+|+ .+++++++.|+..+ +++.|.+.+.++++.
T Consensus 174 i-v~f~~ls~~ei~~~L~-----------~ia~~egi--~i~~~al~~La~~s--------~gdlr~al~~Lekl~ 227 (614)
T PRK14971 174 I-FDFNRIQVADIVNHLQ-----------YVASKEGI--TAEPEALNVIAQKA--------DGGMRDALSIFDQVV 227 (614)
T ss_pred e-eecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 7 6999999999998873 33455665 68899999999888 578999999998875
No 207
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.33 E-value=1.5e-11 Score=143.07 Aligned_cols=124 Identities=22% Similarity=0.438 Sum_probs=89.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|++... .++.||..+|.. ..+++||+++ ++++.+.|.+++|+.
T Consensus 117 ~~~vviidea~~l~~~-------------~~~~Ll~~le~~----------~~~~~lIl~~----~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS-------------AFNALLKTLEEP----------PEHVVFILAT----TEPHKIPATILSRCQ 169 (355)
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHhCC----------ccceeEEEEe----CCHHHHHHHHHhhee
Confidence 4679999999999654 466899988862 2345565553 456678899999986
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.++|.+++.+++.+++. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 170 -~~~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~--------~g~~~~a~~~lekl~~--- 224 (355)
T TIGR02397 170 -RFDFKRIPLEDIVERLK-----------KILDKEGI--KIEDEALELIARAA--------DGSLRDALSLLDQLIS--- 224 (355)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCChHHHHHHHHHHHh---
Confidence 57999999999998884 22344565 67899999999876 4578889998888764
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+. .. .||.+.|++.+.
T Consensus 225 ~~--~~--~it~~~v~~~~~ 240 (355)
T TIGR02397 225 FG--NG--NITYEDVNELLG 240 (355)
T ss_pred hc--CC--CCCHHHHHHHhC
Confidence 21 11 266666665443
No 208
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=7.6e-12 Score=150.90 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=72.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|++... .++.||..+|.. ..|++||.++ +++..+.+.+++|+.
T Consensus 119 ~~KVvIIDEad~Lt~~-------------a~naLLk~LEep----------p~~~v~Il~t----t~~~kl~~tI~SRc~ 171 (486)
T PRK14953 119 KYKVYIIDEAHMLTKE-------------AFNALLKTLEEP----------PPRTIFILCT----TEYDKIPPTILSRCQ 171 (486)
T ss_pred CeeEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEE----CCHHHHHHHHHHhce
Confidence 4569999999999764 678999999853 2355666554 356678889999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|.+++.+++.++|. ..++.+|+ .++++|+..|++.+-
T Consensus 172 -~i~f~~ls~~el~~~L~-----------~i~k~egi--~id~~al~~La~~s~ 211 (486)
T PRK14953 172 -RFIFSKPTKEQIKEYLK-----------RICNEEKI--EYEEKALDLLAQASE 211 (486)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 45666776 778999999987654
No 209
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.4e-11 Score=152.36 Aligned_cols=107 Identities=16% Similarity=0.334 Sum_probs=82.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++... .++.||..+|.. ..+++||+++ ++|..+.|.+++|+.
T Consensus 121 ~~KViIIDEad~Lt~~-------------a~naLLK~LEeP----------p~~tvfIL~t----~~~~~llpTIrSRc~ 173 (620)
T PRK14948 121 RWKVYVIDECHMLSTA-------------AFNALLKTLEEP----------PPRVVFVLAT----TDPQRVLPTIISRCQ 173 (620)
T ss_pred CceEEEEECccccCHH-------------HHHHHHHHHhcC----------CcCeEEEEEe----CChhhhhHHHHhhee
Confidence 4679999999999754 567999999952 3456677653 467789999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
. +.|.+++.+++...|. .++..+|+ .++++++..|++.+ +++.|++.+.++++.
T Consensus 174 ~-~~f~~l~~~ei~~~L~-----------~ia~kegi--~is~~al~~La~~s--------~G~lr~A~~lLekls 227 (620)
T PRK14948 174 R-FDFRRIPLEAMVQHLS-----------EIAEKESI--EIEPEALTLVAQRS--------QGGLRDAESLLDQLS 227 (620)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 5 6999999998887773 22334455 57899999999887 577899998888753
No 210
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.33 E-value=5.4e-12 Score=145.45 Aligned_cols=92 Identities=23% Similarity=0.426 Sum_probs=69.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...+|||||+|.+... .|+.|+.++|... .+..||.++. +|+.+.+.|.+|+-
T Consensus 125 ~~~vlilDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~Il~~~----~~~~~~~~L~sr~~ 177 (337)
T PRK12402 125 DYKTILLDNAEALRED-------------AQQALRRIMEQYS----------RTCRFIIATR----QPSKLIPPIRSRCL 177 (337)
T ss_pred CCcEEEEeCcccCCHH-------------HHHHHHHHHHhcc----------CCCeEEEEeC----ChhhCchhhcCCce
Confidence 3569999999988543 6778888888532 1123444432 56778899999974
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+++.+++.++|. ..++.+|+ .+++++++.|++.+
T Consensus 178 -~v~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~al~~l~~~~ 216 (337)
T PRK12402 178 -PLFFRAPTDDELVDVLE-----------SIAEAEGV--DYDDDGLELIAYYA 216 (337)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 57999999999998888 44566777 58899999999876
No 211
>PRK04195 replication factor C large subunit; Provisional
Probab=99.32 E-value=1.6e-11 Score=148.76 Aligned_cols=61 Identities=30% Similarity=0.422 Sum_probs=51.4
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+++||++++..+..++... .. .+ ++.++||+||||||||++|+++|+.++.+++.+++++.
T Consensus 15 dlvg~~~~~~~l~~~l~~~-~~------g~---~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESW-LK------GK---PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred HhcCCHHHHHHHHHHHHHH-hc------CC---CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 6889999999999988652 21 11 14799999999999999999999999999999998874
No 212
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6.1e-12 Score=154.57 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=73.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .++.||+.+|... .|+.||++. +++..+.+.+++||-
T Consensus 132 ~~KVvIIDEad~Ls~~-------------a~naLLKtLEePp----------~~~~fIl~t----te~~kll~tI~SRcq 184 (598)
T PRK09111 132 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEPP----------PHVKFIFAT----TEIRKVPVTVLSRCQ 184 (598)
T ss_pred CcEEEEEEChHhCCHH-------------HHHHHHHHHHhCC----------CCeEEEEEe----CChhhhhHHHHhhee
Confidence 4569999999999765 6789999999632 344555543 466678899999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|.+++.+++.+.|. ..++.+|+ .+++++++.|+..+-
T Consensus 185 -~~~f~~l~~~el~~~L~-----------~i~~kegi--~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 185 -RFDLRRIEADVLAAHLS-----------RIAAKEGV--EVEDEALALIARAAE 224 (598)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 45567777 678999999888664
No 213
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1e-11 Score=153.56 Aligned_cols=93 Identities=17% Similarity=0.357 Sum_probs=74.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||+.+|... ++..||++. +++..+.|.|++||-
T Consensus 121 ~~KVvIIdea~~Ls~~-------------a~naLLK~LEepp----------~~tifIL~t----t~~~kIl~tI~SRc~ 173 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA-------------AFNAFLKTLEEPP----------SYAIFILAT----TEKHKILPTILSRCQ 173 (614)
T ss_pred CcEEEEEECcccCCHH-------------HHHHHHHHHhCCC----------CCeEEEEEe----CCchhchHHHHhhhh
Confidence 3469999999999764 7889999999632 344566554 367789999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.|. ..+..+|+ .+++++++.|+..+-
T Consensus 174 i-v~f~~ls~~ei~~~L~-----------~ia~~egi--~i~~~al~~La~~s~ 213 (614)
T PRK14971 174 I-FDFNRIQVADIVNHLQ-----------YVASKEGI--TAEPEALNVIAQKAD 213 (614)
T ss_pred e-eecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 7 6999999999998887 45666787 678999999988764
No 214
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=4.5e-11 Score=139.60 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=90.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
+..||+|||+|.+....+. +-..|+.+.+- ......++.+|+.++- ..-++.+.|.+.+||.
T Consensus 129 ~~~vlvIDE~d~L~~~~~~----------~L~~l~~~~~~-------~~~~~~~v~lI~i~n~-~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDD----------LLYQLSRARSN-------GDLDNAKVGVIGISND-LKFRENLDPRVKSSLC 190 (365)
T ss_pred CeEEEEECchhhhccCCcH----------HHHhHhccccc-------cCCCCCeEEEEEEECC-cchHhhcCHHHhccCC
Confidence 4679999999999833211 22234433211 1123356677776532 1123458888889984
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.|+|++.+++.+|+. . .. +.....-.+++++++.+++.+.. ..+.+|.+..++.++.+..
T Consensus 191 ~~~i~f~p~~~~e~~~il~---~-r~-------~~~~~~~~~~~~~l~~i~~~~~~-----~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILE---N-RA-------EKAFYDGVLDDGVIPLCAALAAQ-----EHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cceeeeCCCCHHHHHHHHH---H-HH-------HhhccCCCCChhHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Confidence 678999999999999995 1 11 10011224889999999988765 3578999999998877543
Q ss_pred hcccCCCeeEEccccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
..+- .-.||.+.|++.+..
T Consensus 255 ~~~~---~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 255 EREG---AERVTEDHVEKAQEK 273 (365)
T ss_pred HHcC---CCCCCHHHHHHHHHH
Confidence 2211 124777777665543
No 215
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=2e-11 Score=143.49 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=64.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|+||||+|++++. .++.||+.+|.. ..+.+||.+. ++|+.+.|.+++|+.
T Consensus 117 ~~kViiIDead~m~~~-------------aanaLLk~LEep----------~~~~~fIL~a----~~~~~llpTIrSRc~ 169 (394)
T PRK07940 117 RWRIVVIEDADRLTER-------------AANALLKAVEEP----------PPRTVWLLCA----PSPEDVLPTIRSRCR 169 (394)
T ss_pred CcEEEEEechhhcCHH-------------HHHHHHHHhhcC----------CCCCeEEEEE----CChHHChHHHHhhCe
Confidence 5679999999999866 456899999862 2344454442 458899999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
.+.|++++.+++.+.|. +..| +++++.+.++..+
T Consensus 170 -~i~f~~~~~~~i~~~L~--------------~~~~----~~~~~a~~la~~s 203 (394)
T PRK07940 170 -HVALRTPSVEAVAEVLV--------------RRDG----VDPETARRAARAS 203 (394)
T ss_pred -EEECCCCCHHHHHHHHH--------------HhcC----CCHHHHHHHHHHc
Confidence 57999999999888773 1113 4577777777666
No 216
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.4e-11 Score=150.23 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=90.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .++.||..+|.. ..+.+||... +++..+.+.+.+|+.
T Consensus 120 ~~kVvIIDEa~~L~~~-------------a~naLLk~LEep----------p~~tv~Il~t----~~~~kll~tI~SR~~ 172 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEP----------PPHAIFILAT----TEVHKVPATILSRCQ 172 (585)
T ss_pred CeEEEEEeChHhCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----CChhhhhHHHHhccc
Confidence 5789999999999754 456899999863 2345566542 355668899999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++++..++..++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.++++..
T Consensus 173 ~-i~f~~l~~~el~~~L~-----------~~a~~egl--~i~~eal~~La~~s--------~Gdlr~al~~LekL~~--- 227 (585)
T PRK14950 173 R-FDFHRHSVADMAAHLR-----------KIAAAEGI--NLEPGALEAIARAA--------TGSMRDAENLLQQLAT--- 227 (585)
T ss_pred e-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 7999999999888873 23344565 57899999999877 5678999999998743
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. + -.||.+.|++.+.
T Consensus 228 y~--~--~~It~e~V~~ll~ 243 (585)
T PRK14950 228 TY--G--GEISLSQVQSLLG 243 (585)
T ss_pred hc--C--CCCCHHHHHHHhc
Confidence 21 1 1367666665544
No 217
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.30 E-value=4.1e-11 Score=137.35 Aligned_cols=114 Identities=18% Similarity=0.330 Sum_probs=81.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.+|||||+|++... ..|..|..++|.. ..+..||+++ +.++.+.|.+.+|+.
T Consensus 100 ~~~vliiDe~d~l~~~------------~~~~~L~~~le~~----------~~~~~~Ilt~----n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY----------SKNCSFIITA----NNKNGIIEPLRSRCR 153 (316)
T ss_pred CCeEEEEECcccccCH------------HHHHHHHHHHHhc----------CCCceEEEEc----CChhhchHHHHhhce
Confidence 4679999999988322 1455677777742 2334566654 356779999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
. +.|+.++.++..+++. .+..+....+..+|+ .++++++..+++.+ ..+.|++.+.++..
T Consensus 154 ~-i~~~~p~~~~~~~il~----~~~~~~~~~~~~~~~--~i~~~al~~l~~~~--------~~d~r~~l~~l~~~ 213 (316)
T PHA02544 154 V-IDFGVPTKEEQIEMMK----QMIVRCKGILEAEGV--EVDMKVLAALVKKN--------FPDFRRTINELQRY 213 (316)
T ss_pred E-EEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Confidence 5 6899999999998884 355555666667776 56899999998765 35667777767654
No 218
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.6e-11 Score=151.85 Aligned_cols=92 Identities=15% Similarity=0.335 Sum_probs=71.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|++... .|+.||+.+|... .+++||++. ++|+.+.|.|++||-+
T Consensus 122 ~KViIIDEad~Lt~~-------------a~naLLK~LEePp----------~~tvfIL~t----~~~~~llpTIrSRc~~ 174 (620)
T PRK14948 122 WKVYVIDECHMLSTA-------------AFNALLKTLEEPP----------PRVVFVLAT----TDPQRVLPTIISRCQR 174 (620)
T ss_pred ceEEEEECccccCHH-------------HHHHHHHHHhcCC----------cCeEEEEEe----CChhhhhHHHHhheeE
Confidence 469999999999764 7889999999532 345666654 3688899999999965
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++|.+++.+++.+.|. .+++.+|+ .++++++..|++.+.
T Consensus 175 -~~f~~l~~~ei~~~L~-----------~ia~kegi--~is~~al~~La~~s~ 213 (620)
T PRK14948 175 -FDFRRIPLEAMVQHLS-----------EIAEKESI--EIEPEALTLVAQRSQ 213 (620)
T ss_pred -EEecCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcC
Confidence 6999999999887777 44455666 578888888887764
No 219
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=8.5e-11 Score=138.77 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=90.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC-
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~- 497 (1165)
.+.||+|||+|.+...... .+...|+..++.. ...++.+|+.|+- ..-+..+.|.+.+|+
T Consensus 138 ~~~viviDE~d~l~~~~~~---------~~l~~l~~~~~~~---------~~~~v~vI~i~~~-~~~~~~l~~~~~s~~~ 198 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGN---------DVLYSLLRAHEEY---------PGARIGVIGISSD-LTFLYILDPRVKSVFR 198 (394)
T ss_pred CEEEEEECCHhHhhccCCc---------hHHHHHHHhhhcc---------CCCeEEEEEEECC-cchhhhcCHHHHhcCC
Confidence 4569999999999822111 1333454444321 1236667777642 122334778888887
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+..|.|+|++.+++.+|+... + +.....-.+++++++.+++.+.. ..+++|.+..++.++.+..
T Consensus 199 ~~~i~f~py~~~e~~~il~~r---~--------~~~~~~~~~~~~~l~~i~~~~~~-----~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 199 PEEIYFPPYTADEIFDILKDR---V--------EEGFYPGVVDDEVLDLIADLTAR-----EHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cceeecCCCCHHHHHHHHHHH---H--------HhhcccCCCCHhHHHHHHHHHHH-----hcCcHHHHHHHHHHHHHHH
Confidence 467899999999999999521 1 11111225899999999998865 3577999998888766543
Q ss_pred hcccCCCeeEEcccccccccccC
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
...- .-.||.+.|++.+...
T Consensus 263 ~~~~---~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 263 EREG---SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHcC---CCCcCHHHHHHHHHHH
Confidence 2211 1347777776655533
No 220
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.8e-11 Score=151.32 Aligned_cols=93 Identities=19% Similarity=0.340 Sum_probs=71.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .++.||+.+|... .+.+||+.. +++..+.+.+.+|+-
T Consensus 120 ~~kVvIIDEa~~L~~~-------------a~naLLk~LEepp----------~~tv~Il~t----~~~~kll~tI~SR~~ 172 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEPP----------PHAIFILAT----TEVHKVPATILSRCQ 172 (585)
T ss_pred CeEEEEEeChHhCCHH-------------HHHHHHHHHhcCC----------CCeEEEEEe----CChhhhhHHHHhccc
Confidence 4569999999999764 6789999999632 344565543 356678899999987
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|++++.+++.+++. ..+..+|+ .++++++..|++.+-
T Consensus 173 ~-i~f~~l~~~el~~~L~-----------~~a~~egl--~i~~eal~~La~~s~ 212 (585)
T PRK14950 173 R-FDFHRHSVADMAAHLR-----------KIAAAEGI--NLEPGALEAIARAAT 212 (585)
T ss_pred e-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 4 7999999999988887 44555676 578999998887664
No 221
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.28 E-value=3e-11 Score=133.15 Aligned_cols=131 Identities=17% Similarity=0.230 Sum_probs=85.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~R 496 (1165)
..++|||||+.+...... .+.++..+....|. .++-+|.||. ..|.. +.|.|++|
T Consensus 98 ~dlliiDdi~~~~~~~~~-------~~~lf~l~n~~~e~------------g~~~li~ts~---~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 98 LSLVCIDNIECIAGDELW-------EMAIFDLYNRILES------------GRTRLLITGD---RPPRQLNLGLPDLASR 155 (235)
T ss_pred CCEEEEeChhhhcCCHHH-------HHHHHHHHHHHHHc------------CCCeEEEeCC---CChHHcCcccHHHHHH
Confidence 358999999998754221 12233344444442 1222444543 33444 67999999
Q ss_pred CC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 497 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 497 ~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+. ..+.|++|+.+++.+||. +....+| +.++++++++|++.+ ..++|.|..+++++.
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~-----------~~a~~~~--~~l~~~v~~~L~~~~--------~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQ-----------LRARLRG--FELPEDVGRFLLKRL--------DREMRTLFMTLDQLD 214 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhh--------cCCHHHHHHHHHHHH
Confidence 95 667999999999999984 1122334 588999999999988 568999999999964
Q ss_pred HHhhcccCCCeeEEccccccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
. .+.. .+ ..||.+.+++.+
T Consensus 215 ~-~~l~-~~--~~it~~~~k~~l 233 (235)
T PRK08084 215 R-ASIT-AQ--RKLTIPFVKEIL 233 (235)
T ss_pred H-HHHh-cC--CCCCHHHHHHHH
Confidence 2 2211 11 236766666544
No 222
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=3.9e-11 Score=141.15 Aligned_cols=70 Identities=21% Similarity=0.477 Sum_probs=55.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.+|... .+.+||.+. ++|+.+.|.+++||-
T Consensus 117 ~~kViiIDead~m~~~-------------aanaLLk~LEep~----------~~~~fIL~a----~~~~~llpTIrSRc~ 169 (394)
T PRK07940 117 RWRIVVIEDADRLTER-------------AANALLKAVEEPP----------PRTVWLLCA----PSPEDVLPTIRSRCR 169 (394)
T ss_pred CcEEEEEechhhcCHH-------------HHHHHHHHhhcCC----------CCCeEEEEE----CChHHChHHHHhhCe
Confidence 3459999999999775 6789999999632 233444443 358999999999996
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
.+.|++++.+++.+.|.
T Consensus 170 -~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 170 -HVALRTPSVEAVAEVLV 186 (394)
T ss_pred -EEECCCCCHHHHHHHHH
Confidence 57999999999998886
No 223
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.26 E-value=1.8e-11 Score=146.37 Aligned_cols=94 Identities=20% Similarity=0.405 Sum_probs=81.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.|++|||+|-+.+. ..+.||+.+|. -..|+.||+++. .|..+.+.+++||-
T Consensus 119 ryKVyiIDEvHMLS~~-------------afNALLKTLEE----------PP~hV~FIlATT----e~~Kip~TIlSRcq 171 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------------AFNALLKTLEE----------PPSHVKFILATT----EPQKIPNTILSRCQ 171 (515)
T ss_pred cceEEEEecHHhhhHH-------------HHHHHhccccc----------CccCeEEEEecC----CcCcCchhhhhccc
Confidence 3569999999999987 67799999996 458999998864 88889999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. ..|+.|+.+++.+-|. .++..||+ .++++|+..||+.|-.
T Consensus 172 ~-f~fkri~~~~I~~~L~-----------~i~~~E~I--~~e~~aL~~ia~~a~G 212 (515)
T COG2812 172 R-FDFKRLDLEEIAKHLA-----------AILDKEGI--NIEEDALSLIARAAEG 212 (515)
T ss_pred c-ccccCCCHHHHHHHHH-----------HHHHhcCC--ccCHHHHHHHHHHcCC
Confidence 6 5999999999988887 77888898 7889999999987754
No 224
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=9.2e-11 Score=143.97 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=84.2
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
..||+|||||.|.+.. |..|+.+++-.. .....+.+|+..+ ...-|..+.|.+++||..
T Consensus 870 v~IIILDEID~L~kK~-------------QDVLYnLFR~~~-------~s~SKLiLIGISN-dlDLperLdPRLRSRLg~ 928 (1164)
T PTZ00112 870 VSILIIDEIDYLITKT-------------QKVLFTLFDWPT-------KINSKLVLIAISN-TMDLPERLIPRCRSRLAF 928 (1164)
T ss_pred ceEEEeehHhhhCccH-------------HHHHHHHHHHhh-------ccCCeEEEEEecC-chhcchhhhhhhhhcccc
Confidence 4599999999998652 335666665321 1233566777643 234566788999999875
Q ss_pred -eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 500 -RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 500 -~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
++.|+|++.+++.+||.. . +.. ..-.|+++|++.+|+.++. .+++||+...+++++.+
T Consensus 929 eeIvF~PYTaEQL~dILk~----R-------Ae~--A~gVLdDdAIELIArkVAq-----~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKE----R-------LEN--CKEIIDHTAIQLCARKVAN-----VSGDIRKALQICRKAFE 987 (1164)
T ss_pred ccccCCCCCHHHHHHHHHH----H-------HHh--CCCCCCHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHh
Confidence 378999999999999951 1 111 1235899999999998876 37899999999998875
No 225
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.24 E-value=1.1e-10 Score=133.48 Aligned_cols=123 Identities=24% Similarity=0.325 Sum_probs=85.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
+..+|||||+|.+... .|+.|+.++|... .+..||.++ +.+..+.+.+.+|+.
T Consensus 102 ~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~lIl~~----~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-------------AQQALRRTMEMYS----------QNTRFILSC----NYSSKIIDPIQSRCA 154 (319)
T ss_pred CceEEEEeCcccCCHH-------------HHHHHHHHHhcCC----------CCCeEEEEe----CCccccchhHHHHhh
Confidence 3569999999998654 3557888887421 122344432 355678889999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|.+++.+++..++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.++++...
T Consensus 155 ~-~~~~~l~~~ei~~~l~-----------~~~~~~~~--~i~~~al~~l~~~~--------~gd~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 155 V-FRFSPLKKEAVAERLR-----------YIAENEGI--EITDDALEAIYYVS--------EGDMRKAINALQAAAAT-- 210 (319)
T ss_pred e-eeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHc--
Confidence 5 7999999999988884 23344565 67899999999876 56789998888876531
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. -.||.+.|++.+.
T Consensus 211 ---~---~~it~~~v~~~~~ 224 (319)
T PRK00440 211 ---G---KEVTEEAVYKITG 224 (319)
T ss_pred ---C---CCCCHHHHHHHhC
Confidence 1 1366666655443
No 226
>KOG0991|consensus
Probab=99.23 E-value=2.7e-11 Score=128.41 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=76.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
..||++||.|.++. |.|++|...||-.+-+|++ +.+ .+....++..+|+|+.+
T Consensus 114 hKIiILDEADSMT~-------------gAQQAlRRtMEiyS~ttRF----------ala----CN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 114 HKIIILDEADSMTA-------------GAQQALRRTMEIYSNTTRF----------ALA----CNQSEKIIEPIQSRCAI 166 (333)
T ss_pred eeEEEeeccchhhh-------------HHHHHHHHHHHHHcccchh----------hhh----hcchhhhhhhHHhhhHh
Confidence 46999999998874 5899999999976655544 111 12233588889999987
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
. .|..|+..++..-|. ...+.+++ .+++++++.|...| .++.|...+.+...+
T Consensus 167 L-Rysklsd~qiL~Rl~-----------~v~k~Ekv--~yt~dgLeaiifta--------~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 167 L-RYSKLSDQQILKRLL-----------EVAKAEKV--NYTDDGLEAIIFTA--------QGDMRQALNNLQSTV 219 (333)
T ss_pred h-hhcccCHHHHHHHHH-----------HHHHHhCC--CCCcchHHHhhhhc--------cchHHHHHHHHHHHh
Confidence 4 899999887655442 22334454 78999999999877 567787777666554
No 227
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.23 E-value=3.6e-11 Score=137.41 Aligned_cols=91 Identities=29% Similarity=0.402 Sum_probs=68.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..+|||||+|.+... .|+.|+.++|...-+ ..||+++ +.+..+.+.+++|+.+
T Consensus 103 ~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~~----------~~lIl~~----~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 103 FKIIFLDEADNLTSD-------------AQQALRRTMEMYSQN----------TRFILSC----NYSSKIIDPIQSRCAV 155 (319)
T ss_pred ceEEEEeCcccCCHH-------------HHHHHHHHHhcCCCC----------CeEEEEe----CCccccchhHHHHhhe
Confidence 459999999999654 577899888853211 2234333 3567888999999885
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
++|++++.+++.+++. ..++.+|+ .+++++++.|++.+
T Consensus 156 -~~~~~l~~~ei~~~l~-----------~~~~~~~~--~i~~~al~~l~~~~ 193 (319)
T PRK00440 156 -FRFSPLKKEAVAERLR-----------YIAENEGI--EITDDALEAIYYVS 193 (319)
T ss_pred -eeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 7999999999988888 34556677 67899999998865
No 228
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=6.5e-11 Score=137.49 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=84.7
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|++.+.+.+....... + ....+.||+|||+|.++.. .++.||+.+|..
T Consensus 119 ~~I~vd~iR~l~~~l~~~-----------~--~~g~~rVviIDeAd~l~~~-------------aanaLLk~LEEp---- 168 (351)
T PRK09112 119 TAITVDEIRRVGHFLSQT-----------S--GDGNWRIVIIDPADDMNRN-------------AANAILKTLEEP---- 168 (351)
T ss_pred ccCCHHHHHHHHHHhhhc-----------c--ccCCceEEEEEchhhcCHH-------------HHHHHHHHHhcC----
Confidence 457788877655332210 0 1124679999999999876 556899999862
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG 543 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a 543 (1165)
..+.+||... .+|+.+.|.+++|+. .+.|.+|+.+++.++|+. .+....+++++
T Consensus 169 ------p~~~~fiLit----~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~---------------~~~~~~~~~~~ 222 (351)
T PRK09112 169 ------PARALFILIS----HSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSH---------------LGSSQGSDGEI 222 (351)
T ss_pred ------CCCceEEEEE----CChhhccHHHHhhcc-EEEecCCCHHHHHHHHHH---------------hhcccCCCHHH
Confidence 2344454442 468888999999995 689999999999999851 12222377888
Q ss_pred HHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 544 IQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 544 ~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
++.+++.+ ++..|...++++
T Consensus 223 ~~~i~~~s--------~G~pr~Al~ll~ 242 (351)
T PRK09112 223 TEALLQRS--------KGSVRKALLLLN 242 (351)
T ss_pred HHHHHHHc--------CCCHHHHHHHHh
Confidence 88887766 455666665553
No 229
>KOG0744|consensus
Probab=99.21 E-value=3.6e-11 Score=132.71 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=63.2
Q ss_pred EEEEecchhhhccCCCCC-CCccc-hhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDIS-RAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~-~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
-|+|||++.++..+.+.+ +.+.| .-.|.++||+-+|.-. ...|+++.|+.+. -+.++-+|.-|-++
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK--------~~~NvliL~TSNl----~~siD~AfVDRADi 320 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK--------RYPNVLILATSNL----TDSIDVAFVDRADI 320 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc--------cCCCEEEEeccch----HHHHHHHhhhHhhh
Confidence 578999999998875533 33332 3368899999888521 3467777777432 34588899999999
Q ss_pred eEecCCCCHHHHHHHHhh
Q psy2392 500 RVELDSLSISDFTRIMTS 517 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~ 517 (1165)
+....+++...+++|++.
T Consensus 321 ~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKS 338 (423)
T ss_pred eeecCCccHHHHHHHHHH
Confidence 999999999999999963
No 230
>KOG0732|consensus
Probab=99.20 E-value=7.1e-11 Score=148.26 Aligned_cols=177 Identities=24% Similarity=0.363 Sum_probs=136.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-----CCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-----NAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-----~~~fi~l~~se~~~~ 855 (1165)
++|.|.+.++..+.+.+..++....++.+.. ..+|.++||+||||+|||..|+++|..+ ...|+.-++++..++
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lsk 343 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSK 343 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhcc
Confidence 7899999999999999988776665555332 2237899999999999999999999998 355666777777777
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|+|+. +..++.+|+.|.+.
T Consensus 344 -wvgEa-ERqlrllFeeA~k~----------------------------------------------------------- 362 (1080)
T KOG0732|consen 344 -WVGEA-ERQLRLLFEEAQKT----------------------------------------------------------- 362 (1080)
T ss_pred -ccCcH-HHHHHHHHHHHhcc-----------------------------------------------------------
Confidence 99998 45688887766222
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 363 -------------------------------------------------------------------------------- 362 (1080)
T KOG0732|consen 363 -------------------------------------------------------------------------------- 362 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhh--hc
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPEL--QG 1093 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel--~g 1093 (1165)
++.|||+||||-++.-+++ ..+.-..-+--.||++|.|- -.+..+..|+|+ +.|..+.|+| -|
T Consensus 363 -qPSIIffdeIdGlapvrSs--kqEqih~SIvSTLLaLmdGl--------dsRgqVvvigAT----nRpda~dpaLRRPg 427 (1080)
T KOG0732|consen 363 -QPSIIFFDEIDGLAPVRSS--KQEQIHASIVSTLLALMDGL--------DSRGQVVVIGAT----NRPDAIDPALRRPG 427 (1080)
T ss_pred -CceEEeccccccccccccc--hHHHhhhhHHHHHHHhccCC--------CCCCceEEEccc----CCccccchhhcCCc
Confidence 6789999999999877543 12222223556799999863 234456667765 5899999999 58
Q ss_pred cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1094 RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1094 R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
||.--+.|+-.+.++-.+||.
T Consensus 428 rfdref~f~lp~~~ar~~Il~ 448 (1080)
T KOG0732|consen 428 RFDREFYFPLPDVDARAKILD 448 (1080)
T ss_pred ccceeEeeeCCchHHHHHHHH
Confidence 999888999999999988886
No 231
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.20 E-value=3.5e-10 Score=134.05 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=81.3
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCC--CCCchhhhCCCC
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP--SDLIPELQGRFP 498 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p--~~l~pel~~R~~ 498 (1165)
.++|+|||.++.++ +|..||..|+...++.........-.+|++|++ .-| ..+.++|.-||-
T Consensus 109 ~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN---~LPE~g~~leAL~DRFl 172 (498)
T PRK13531 109 EIVFLDEIWKAGPA-------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASN---ELPEADSSLEALYDRML 172 (498)
T ss_pred cEEeecccccCCHH-------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC---CCcccCCchHHhHhhEE
Confidence 39999999988877 777999999766665422223333344444432 223 247779999999
Q ss_pred eeEecCCCC-HHHHHHHHhhhhH---h-------HH-HHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC--CccCcc
Q psy2392 499 IRVELDSLS-ISDFTRIMTSTNV---C-------LT-KQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT--ENIGAR 564 (1165)
Q Consensus 499 ~~v~~~~L~-~~~l~~Il~~~~~---~-------l~-~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~--~~~GAR 564 (1165)
+++.+++|+ ++++.++|..... . +. .+... +...--.+.+++...+.|.++........ ....-|
T Consensus 173 iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 999999997 5777888863110 0 11 11111 22222345778888888888775322111 124456
Q ss_pred hhHHHHH
Q psy2392 565 RLYTAME 571 (1165)
Q Consensus 565 ~l~~~ie 571 (1165)
+...++.
T Consensus 252 ~~~~l~~ 258 (498)
T PRK13531 252 RWKKAIR 258 (498)
T ss_pred HHHHHHH
Confidence 6665543
No 232
>PRK06893 DNA replication initiation factor; Validated
Probab=99.19 E-value=9.8e-11 Score=128.60 Aligned_cols=132 Identities=17% Similarity=0.287 Sum_probs=86.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
+..+++||||+.+..... .+..|+.++.... .....++|.++. ..|+. ..|.|.+
T Consensus 91 ~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~--------~~~~~illits~---~~p~~l~~~~~~L~s 148 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIK--------EQGKTLLLISAD---CSPHALSIKLPDLAS 148 (229)
T ss_pred cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCCcEEEEeCC---CChHHccccchhHHH
Confidence 456999999999864422 2345666665211 112223333322 23444 4499999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|+. ..+.+++|+.+++.+||. +....++ +.++++++++|++.+ ..+.|.|..+++++
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~-----------~~a~~~~--l~l~~~v~~~L~~~~--------~~d~r~l~~~l~~l 207 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQ-----------RNAYQRG--IELSDEVANFLLKRL--------DRDMHTLFDALDLL 207 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHH
Confidence 875 677999999999999994 1122334 588999999999988 56899999999987
Q ss_pred HHHhhcccCCCeeEEccccccccc
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
. ..+. ..+. .||...|++.+
T Consensus 208 ~-~~~~-~~~~--~it~~~v~~~L 227 (229)
T PRK06893 208 D-KASL-QAQR--KLTIPFVKEIL 227 (229)
T ss_pred H-HHHH-hcCC--CCCHHHHHHHh
Confidence 4 3333 1112 37777776654
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.18 E-value=1.9e-10 Score=125.10 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=82.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC-
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~- 498 (1165)
.++|+|||+|.+..... .|..|..+++... .... .+|.++...........+.|.+|+.
T Consensus 91 ~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~--------~~~~-~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVR--------EAGG-RLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred CCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCC-eEEEECCCChHHCCcccHHHHHHHhc
Confidence 46999999999865421 2445665554211 0111 2344433211111122388999984
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.+++|+.++...++. . .+...+ +.+++++++.|+... .+..|-|+++++++-. .
T Consensus 151 ~~~i~l~~l~~~e~~~~l~----~-------~~~~~~--~~~~~~~l~~L~~~~--------~gn~r~L~~~l~~~~~-~ 208 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQ----S-------RAARRG--LQLPDEVADYLLRHG--------SRDMGSLMALLDALDR-A 208 (226)
T ss_pred CeeEecCCCCHHHHHHHHH----H-------HHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHH-H
Confidence 788999999999988883 1 122234 478999999999853 4678999999988653 3
Q ss_pred hcccCCCeeEEccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+... ...||.+.+++.+
T Consensus 209 ~~~~---~~~i~~~~~~~~~ 225 (226)
T TIGR03420 209 SLAA---KRKITIPFVKEVL 225 (226)
T ss_pred HHHh---CCCCCHHHHHHHh
Confidence 3221 1357777776543
No 234
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8.3e-11 Score=117.52 Aligned_cols=154 Identities=64% Similarity=0.957 Sum_probs=145.0
Q ss_pred ccCcceeeeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2392 616 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVE 695 (1165)
Q Consensus 616 ~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~ 695 (1165)
+-+||++++.++.-.+||++.+..+.+.++|-.|.+.|+||.++|+.-...++.+++.++.++..++|.|.+..++++|+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raave 81 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVE 81 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHHHHhh
Q psy2392 696 LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKS 769 (1165)
Q Consensus 696 LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~~~ 769 (1165)
|++.|.+||+|.....|+..+.....+.+++.+++++|++-+..+++++.+++..++.+.+.+.+.+.++....
T Consensus 82 laKdwr~Dk~lr~LEAmllVad~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~~s 155 (178)
T COG5405 82 LAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIAEKS 155 (178)
T ss_pred HHHhhhhhhHHHHHhhheeEeCCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999999999999998888888888889999999999999999999999999999999998888888875543
No 235
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.16 E-value=2.7e-10 Score=134.99 Aligned_cols=117 Identities=22% Similarity=0.288 Sum_probs=74.3
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
++|+|||.+.... +|..||..|+...++.---.....-.+|++|.. .......+.++|..||-+++
T Consensus 110 lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN-~LPE~g~~leAL~DRFliri 175 (498)
T PRK13531 110 IVFLDEIWKAGPA-------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASN-ELPEADSSLEALYDRMLIRL 175 (498)
T ss_pred EEeecccccCCHH-------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC-CCcccCCchHHhHhhEEEEE
Confidence 9999999877766 999999999766655311122333344444443 11112346778999999999
Q ss_pred EcCCCC-HHHHHHHHhhhHH---H-------h-HHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1100 ELDSLS-ISDFTRIMTSTNV---C-------L-TKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1100 ~l~~l~-~~~l~~il~~~~~---~-------l-~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+++|+ ++++.++|..... . + ...+.. +..+=-++.++++.+++|..+...
T Consensus 176 ~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred ECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcceeCCHHHHHHHHHHHHH
Confidence 999997 6788999863110 0 1 111111 122223458899999999988764
No 236
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.12 E-value=9.8e-10 Score=123.13 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=57.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee-----e-cCceEEEEEeCCccc-CCCCCCch
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI-----I-KTDHILFIASGAFHL-AKPSDLIP 491 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~-----~-~t~~ilfI~~gaf~~-~~p~~l~p 491 (1165)
++++++||||+++.+. +|..||.++|.+.+....+. + ...+..+|+|.+-.. .--..+.+
T Consensus 105 ~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 5689999999998766 78899999987765542210 1 113445666643210 00124678
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+|..|| ..+.+..++.++..+|+.
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~ 195 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILR 195 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHH
Confidence 899998 567999999999999985
No 237
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.10 E-value=3e-10 Score=129.32 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=59.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc--------cCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--------LAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~--------~~~p~~l~ 490 (1165)
-+||+||||+|-+.....+ .|-..+|.. ...|++.|+ +.. ...|..+.
T Consensus 278 vpGVLFIDEvHmLDiEcFs-------------fLnralEs~----------~sPiiIlAT-NRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFS-------------FLNRALESE----------LSPIIILAT-NRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp EE-EEEEESGGGSBHHHHH-------------HHHHHHTST----------T--EEEEEE-S-SEEE-BTTS-EEETT--
T ss_pred ecceEEecchhhccHHHHH-------------HHHHHhcCC----------CCcEEEEec-CceeeeccCccCcCCCCCC
Confidence 4789999999998765332 455566642 233444333 322 23577788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
..|+.|+-+ |...|++.+|+.+|+. -..+++++ .++++|++.|++++.+
T Consensus 334 ~DlLDRllI-I~t~py~~~ei~~Il~-----------iR~~~E~v--~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 334 LDLLDRLLI-IRTKPYSEEEIKQILK-----------IRAKEEDV--EISEDALDLLTKIGVE 382 (398)
T ss_dssp HHHHTTEEE-EEE----HHHHHHHHH-----------HHHHHCT----B-HHHHHHHHHHHHH
T ss_pred cchHhhcEE-EECCCCCHHHHHHHHH-----------hhhhhhcC--cCCHHHHHHHHHHhhh
Confidence 899999866 5899999999999994 22455666 7889999999999965
No 238
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.10 E-value=1.5e-10 Score=143.22 Aligned_cols=157 Identities=17% Similarity=0.281 Sum_probs=93.2
Q ss_pred HhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-------eecC----ceEEEEEeCCcc
Q psy2392 414 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------IIKT----DHILFIASGAFH 482 (1165)
Q Consensus 414 ~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-------~~~t----~~ilfI~~gaf~ 482 (1165)
+..| +.|++||||++.+.+. +|..|+..++.+.+....+ .+.+ -++.+|++|+..
T Consensus 213 L~~A-ngGtL~Ldei~~L~~~-------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~ 278 (608)
T TIGR00764 213 IHRA-HKGVLYIDEIKTMPLE-------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD 278 (608)
T ss_pred eEEC-CCCEEEEEChHhCCHH-------------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH
Confidence 3344 6899999999999754 6778998887655443111 1111 245678886521
Q ss_pred cCCCCCCchhhhCCCC---eeEecCCC---CHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc
Q psy2392 483 LAKPSDLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 556 (1165)
Q Consensus 483 ~~~p~~l~pel~~R~~---~~v~~~~L---~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~ 556 (1165)
.-..+.|+|+.||+ +.+.|+.. +.+...+++. .+ .+.++.+|....|+++|+++|++.+.+.-.
T Consensus 279 --~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-----~i---~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag 348 (608)
T TIGR00764 279 --DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-----FV---AQEVKKDGRIPHFTRDAVEEIVREAQRRAG 348 (608)
T ss_pred --HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-----HH---HHHHHHhCCCCcCCHHHHHHHHHHHHHHHh
Confidence 12468999999999 88877653 5556555542 22 222344555558999999999987765210
Q ss_pred cCC--ccCcchhHHHHHHHHHHhhcccCC-CeeEEcccccccccc
Q psy2392 557 RTE--NIGARRLYTAMEKLLEEVSFNSNN-ISLLVDADYVNSRLG 598 (1165)
Q Consensus 557 ~~~--~~GAR~l~~~ie~~l~~~~~~~~~-~~~~i~~~~v~~~~~ 598 (1165)
... ..-.|.|.+++... .+.+.. ....|+.+.|++.++
T Consensus 349 ~r~~lsl~~R~L~~llR~A----~~iA~~~~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 349 RKDHLTLRLRELGGLVRAA----GDIAKSSGKVYVTAEHVLKAKK 389 (608)
T ss_pred cccccCCCHHHHHHHHHHH----HHHHHhcCCceecHHHHHHHHH
Confidence 000 01134555555443 221211 225688888876544
No 239
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.10 E-value=2e-09 Score=125.84 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=65.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC-
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~- 1095 (1165)
+..||+|||+|.+.+... .+-..|+.+.+- ......++.+|+.+.- ..-+..+.|.+.+||
T Consensus 129 ~~~vlvIDE~d~L~~~~~----------~~L~~l~~~~~~-------~~~~~~~v~lI~i~n~-~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDD----------DLLYQLSRARSN-------GDLDNAKVGVIGISND-LKFRENLDPRVKSSLC 190 (365)
T ss_pred CeEEEEECchhhhccCCc----------HHHHhHhccccc-------cCCCCCeEEEEEEECC-cchHhhcCHHHhccCC
Confidence 356899999999983311 122233333111 1223356777777641 111236788889998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+..+.|+|++.+++..||+ ..++. . + ..+ .|++++++.+++++..
T Consensus 191 ~~~i~f~p~~~~e~~~il~----~r~~~--~-~-~~~---~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILE----NRAEK--A-F-YDG---VLDDGVIPLCAALAAQ 235 (365)
T ss_pred cceeeeCCCCHHHHHHHHH----HHHHh--h-c-cCC---CCChhHHHHHHHHHHH
Confidence 4678999999999999999 11111 0 1 112 4889999988887653
No 240
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.10 E-value=1.2e-10 Score=132.48 Aligned_cols=298 Identities=19% Similarity=0.301 Sum_probs=135.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGYV 858 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~Gyv 858 (1165)
+-++||.+|.++.-..+..- +.+-. ..+.+||.||||||||.||-++|+++| .||+.+++|++.+. -+
T Consensus 24 ~GlVGQ~~AReAagiiv~mI--k~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~-e~ 93 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI--KEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS-EV 93 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH--HTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT-TC
T ss_pred ccccChHHHHHHHHHHHHHH--hcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec-cc
Confidence 57899999988876655432 21111 137899999999999999999999996 99999999999664 11
Q ss_pred ccChhhHHHHHHHHHHhh-hhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc----------ccchhh----
Q psy2392 859 GRDVDTIIRDLIDISIKQ-TREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE----------NNNIST---- 923 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~-~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~----------~~~~~~---- 923 (1165)
.....+.+.|+++.-. .++ +.+.-+..|+++-..+ ..++-+ +... .++..+
T Consensus 94 --kKTE~L~qa~RraIGvrIkE---------~~eV~EGeVvei~~~~--~~~~~~-~~~~~~~~~i~LkT~~~~~~l~l~ 159 (398)
T PF06068_consen 94 --KKTEALTQAFRRAIGVRIKE---------EKEVYEGEVVEIKIEE--AENPLN-YGKTIKHGKITLKTTDMEKTLKLG 159 (398)
T ss_dssp ---HHHHHHHHHHCSEEEEEEE---------EECEEEEEEEEEEE-----E-TTS--SSSS-EEEEEEEETTCEEEEEE-
T ss_pred --CchHHHHHHHHHhheEEEEE---------EEEEEEEEEEEEEEee--ccCccc-cCCcceEEEEEEEEcCCceEecCC
Confidence 1123456665554221 000 0000000001110000 011111 2211 111111
Q ss_pred HHHHHHhhccCCCCCeEEEEEecCCC----------C-cccc-----cCCc--------------chHHHHH---HHHHH
Q psy2392 924 RQIFRKRLREGALDNKEIEIELNDTG----------P-HMEI-----MSPP--------------GMEEMTA---QIKTM 970 (1165)
Q Consensus 924 r~~~~~~l~~g~ld~r~v~i~~~~~~----------~-~~~~-----~~~~--------------~~~~~~~---~~~~~ 970 (1165)
..-+.++.+++---+-.|+|+-.... . ..++ .+.| .+-++.- ..+++
T Consensus 160 ~~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D~~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q~~ 239 (398)
T PF06068_consen 160 PKIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYDLEATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQDF 239 (398)
T ss_dssp CHHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTSECCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC-----
T ss_pred HHHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhccccccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccccH
Confidence 11223333333333345666654311 0 0111 0111 2223321 12333
Q ss_pred HHhhCC-CCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh---cCCeeeehhhhhhhccCCCCCCCCccchhh
Q psy2392 971 FSVIGN-HRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE---QNGIIFLDEIDKITTRSSQNNNTDISRAGV 1046 (1165)
Q Consensus 971 ~~~~~~-~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~---~~gIvfiDEiDki~~~~~~~~~~~~~~~gv 1046 (1165)
++.+++ .+.++..||-+ .|+- -++.+.+-++... -+|++||||+|-+--.+.+
T Consensus 240 lslf~~~~~~~~~EI~~e-lR~e-----------Ink~V~~wieegkAelvpGVLFIDEvHmLDiEcFs----------- 296 (398)
T PF06068_consen 240 LSLFGQLFKGDTGEITDE-LREE-----------INKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFS----------- 296 (398)
T ss_dssp ----------------HH-HHHH-----------HHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHH-----------
T ss_pred HHHHHhhcCCCcccchHH-HHHH-----------HhHHHHHHHhcCceEEecceEEecchhhccHHHHH-----------
Confidence 333311 11223333311 1110 0122233333322 2589999999988766432
Q ss_pred hhhccccccCccceeeeeeccCceEEEEecCCCC--------CCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHH
Q psy2392 1047 QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--------LAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNV 1118 (1165)
Q Consensus 1047 q~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~--------~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~ 1118 (1165)
.|-..+|..... .+|.|.+.- ...|+.+-..|+.||-| |...|++++|+.+||+
T Consensus 297 --fLnralEs~~sP-----------iiIlATNRg~~~irGt~~~sphGiP~DlLDRllI-I~t~py~~~ei~~Il~---- 358 (398)
T PF06068_consen 297 --FLNRALESELSP-----------IIILATNRGITKIRGTDIISPHGIPLDLLDRLLI-IRTKPYSEEEIKQILK---- 358 (398)
T ss_dssp --HHHHHHTSTT-------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEE-EEE----HHHHHHHHH----
T ss_pred --HHHHHhcCCCCc-----------EEEEecCceeeeccCccCcCCCCCCcchHhhcEE-EECCCCCHHHHHHHHH----
Confidence 455666643222 223332221 23577888899999987 5899999999999999
Q ss_pred HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1119 CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1119 ~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
--++.|+| .++++|++.|++++.+.
T Consensus 359 -------iR~~~E~v--~i~~~al~~L~~ig~~~ 383 (398)
T PF06068_consen 359 -------IRAKEEDV--EISEDALDLLTKIGVET 383 (398)
T ss_dssp -------HHHHHCT----B-HHHHHHHHHHHHHS
T ss_pred -------hhhhhhcC--cCCHHHHHHHHHHhhhc
Confidence 44667888 77899999999998753
No 241
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.10 E-value=1.4e-09 Score=133.88 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=71.5
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe-
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI- 1097 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i- 1097 (1165)
.||+|||||.|.+. .|..|+.+++-.. .....+.+|+... ...-|..|.|.+++||..
T Consensus 871 ~IIILDEID~L~kK-------------~QDVLYnLFR~~~-------~s~SKLiLIGISN-dlDLperLdPRLRSRLg~e 929 (1164)
T PTZ00112 871 SILIIDEIDYLITK-------------TQKVLFTLFDWPT-------KINSKLVLIAISN-TMDLPERLIPRCRSRLAFG 929 (1164)
T ss_pred eEEEeehHhhhCcc-------------HHHHHHHHHHHhh-------ccCCeEEEEEecC-chhcchhhhhhhhhccccc
Confidence 48999999999875 4667877776421 1234567777654 234566788999999865
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
++.|+|++.++|..||..- +.. ..+ .|+++|++.+|+.++..
T Consensus 930 eIvF~PYTaEQL~dILk~R----Ae~------A~g---VLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKER----LEN------CKE---IIDHTAIQLCARKVANV 971 (1164)
T ss_pred cccCCCCCHHHHHHHHHHH----HHh------CCC---CCCHHHHHHHHHhhhhc
Confidence 3789999999999999911 111 123 48999999999977754
No 242
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=3.6e-10 Score=131.37 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=66.3
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.-||+|||+|.+... .++.||+.+|... .+.+||... .+|+.+.|.+++||.
T Consensus 142 ~rVviIDeAd~l~~~-------------aanaLLk~LEEpp----------~~~~fiLit----~~~~~llptIrSRc~- 193 (351)
T PRK09112 142 WRIVIIDPADDMNRN-------------AANAILKTLEEPP----------ARALFILIS----HSSGRLLPTIRSRCQ- 193 (351)
T ss_pred ceEEEEEchhhcCHH-------------HHHHHHHHHhcCC----------CCceEEEEE----CChhhccHHHHhhcc-
Confidence 349999999999876 6789999999632 233444432 468899999999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|.+|+.+++.++|+. . |....|+++++..|+..|.
T Consensus 194 ~i~l~pl~~~~~~~~L~~-----------~----~~~~~~~~~~~~~i~~~s~ 231 (351)
T PRK09112 194 PISLKPLDDDELKKALSH-----------L----GSSQGSDGEITEALLQRSK 231 (351)
T ss_pred EEEecCCCHHHHHHHHHH-----------h----hcccCCCHHHHHHHHHHcC
Confidence 689999999999999982 1 1212266777777766543
No 243
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.09 E-value=2.6e-10 Score=131.29 Aligned_cols=114 Identities=18% Similarity=0.341 Sum_probs=77.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeeccC--ceEEEEecCCCCCCCCC--CCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKT--DHILFIASGAFHLAKPS--DLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~t--~~ilfI~~gaf~~~~p~--dl~pel 1091 (1165)
++|++|+|||+.+... +|..|+..||...++ ++.|...+ ..+.+|+++ +|. .+.+.|
T Consensus 128 ~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~-----NP~e~~l~~aL 189 (334)
T PRK13407 128 NRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSG-----NPEEGELRPQL 189 (334)
T ss_pred CCCeEEecChHhCCHH-------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecC-----CcccCCCCHHH
Confidence 5799999999999776 899999999876543 34443222 234444443 342 478899
Q ss_pred hccCCeEEEcCCCCH-HHHHHHHhhhHH------Hh--------------HHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1092 QGRFPIRVELDSLSI-SDFTRIMTSTNV------CL--------------TKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l~~-~~l~~il~~~~~------~l--------------~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
..||.+.|.+.+... ++-.+|+..... .. +...++.+ . .+.++|+.+++|+.++.
T Consensus 190 ldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~--~--~V~v~~~~~~yi~~l~~ 265 (334)
T PRK13407 190 LDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARL--P--QLKTPNTVLHDCAALCI 265 (334)
T ss_pred HhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhc--C--CcccCHHHHHHHHHHHH
Confidence 999999999998877 777777763211 00 11111221 2 35789999999999987
Q ss_pred cc
Q psy2392 1151 CI 1152 (1165)
Q Consensus 1151 ~~ 1152 (1165)
..
T Consensus 266 ~~ 267 (334)
T PRK13407 266 AL 267 (334)
T ss_pred HH
Confidence 64
No 244
>PRK08727 hypothetical protein; Validated
Probab=99.08 E-value=5.8e-10 Score=122.81 Aligned_cols=132 Identities=16% Similarity=0.252 Sum_probs=85.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
+..+|+|||||.+..... -|..|+.+++... ....-+|+++. ..|+. +.|.|++
T Consensus 93 ~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~---------~~~~~vI~ts~---~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-----------DEVALFDFHNRAR---------AAGITLLYTAR---QMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHH---------HcCCeEEEECC---CChhhhhhhhHHHHH
Confidence 356999999998874322 2335555444211 11111334433 24554 5799999
Q ss_pred CC--CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~--~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|| ...+.|++|+.+++.+||. .....+| +.++++++++|++.+ ...+|.+.++++++
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~-----------~~a~~~~--l~l~~e~~~~La~~~--------~rd~r~~l~~L~~l 208 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLR-----------ERAQRRG--LALDEAAIDWLLTHG--------ERELAGLVALLDRL 208 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 96 5778999999999999994 1112234 588999999999987 46789999999987
Q ss_pred HHHhhcccCCCeeEEcccccccccc
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
....... + ..||...+++.++
T Consensus 209 ~~~~~~~--~--~~it~~~~~~~l~ 229 (233)
T PRK08727 209 DRESLAA--K--RRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHh--C--CCCCHHHHHHHHh
Confidence 6433221 1 2467777766553
No 245
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.08 E-value=8.5e-10 Score=127.46 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=90.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..||.+++.+.+....+ .....++-+|++.+... .....|.++|.
T Consensus 93 ~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 93 DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 5899999999999876 7779999998655432111 11234566777754321 12345889999
Q ss_pred CCCC-eeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe--eEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 495 GRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~--l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
.||. ..|.++||. .+|+..++ ..++.++.. ..|.. ..|++++++.|..+.. .+..|-|+++
T Consensus 160 ~rl~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~---~~~~~~~~~ls~~a~~~L~~y~W-------PGNvrEL~n~ 225 (329)
T TIGR02974 160 DRLAFDVITLPPLRERQEDIMLLA----EHFAIRMAR---ELGLPLFPGFTPQAREQLLEYHW-------PGNVRELKNV 225 (329)
T ss_pred HHhcchhcCCCchhhhhhhHHHHH----HHHHHHHHH---HhCCCCCCCcCHHHHHHHHhCCC-------CchHHHHHHH
Confidence 9994 578999999 57877776 344444332 23444 4799999999987553 4678999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
|++++.
T Consensus 226 i~~~~~ 231 (329)
T TIGR02974 226 VERSVY 231 (329)
T ss_pred HHHHHH
Confidence 999875
No 246
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.07 E-value=1.7e-09 Score=121.13 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=57.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee----c--cCceEEEEecCCCCC-CCCCCCch
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI----I--KTDHILFIASGAFHL-AKPSDLIP 1089 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~----~--~t~~ilfI~~gaf~~-~~p~dl~p 1089 (1165)
+.++++|||||++... +|..||.++|...+...-+. + ...+..+|++.+-.. .--..+.+
T Consensus 105 ~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 5789999999997765 89999999997665432110 0 112444566543110 00124578
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1090 ELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1090 el~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
+|..|| ..+.+.-++.++..+|++.
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 899998 5679999999999999983
No 247
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.06 E-value=3.8e-10 Score=130.24 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=77.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeec--cCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~--~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
+.|++|+|||+.+... +|..||..|+...++ .+.|.. ....+++|++.+-. ...|.|+|..
T Consensus 144 ~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~---eg~l~~~Lld 207 (350)
T CHL00081 144 NRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE---EGELRPQLLD 207 (350)
T ss_pred CCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc---cCCCCHHHHH
Confidence 6799999999999876 899999999764433 223321 12234455543311 1248999999
Q ss_pred cCCeEEEcCCCC-HHHHHHHHhhhHH------HhHHH--------HHHHHh--hcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1094 RFPIRVELDSLS-ISDFTRIMTSTNV------CLTKQ--------YEALLA--TEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1094 R~~i~v~l~~l~-~~~l~~il~~~~~------~l~~q--------~~~l~~--~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
||.+.+.+..++ .++-.+||+.... ...++ ...++. ..=-++.++++.+++|+.++...
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~ 283 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSEL 283 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHH
Confidence 999999999998 4777888874211 00111 011111 11123578999999999999874
No 248
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.06 E-value=1.1e-09 Score=136.78 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=76.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeecc--CceEEEEecCCCCCCCC--CCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIK--TDHILFIASGAFHLAKP--SDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~--t~~ilfI~~gaf~~~~p--~dl~pel 1091 (1165)
..||+|||||+++... +|..||..+|...+. ++.|... ..++.+|++. +| ..|.++|
T Consensus 126 ~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~-----np~eg~l~~~L 187 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM-----NPEEGDLRPQL 187 (633)
T ss_pred CCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec-----CCCCCCCCHHH
Confidence 6799999999999887 899999999865432 3333222 2345666653 34 3588999
Q ss_pred hccCCeEEEcCCCC-HHHHHHHHhhhHH----------------HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPIRVELDSLS-ISDFTRIMTSTNV----------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l~-~~~l~~il~~~~~----------------~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..||+++|.+.++. .++..+|+..-.. ..+..+.......--.+.+++++++.|+.++...
T Consensus 188 ~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~ 265 (633)
T TIGR02442 188 LDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEF 265 (633)
T ss_pred HhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999998875 4556666652100 0111110111111112478999999999999876
No 249
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.06 E-value=4.2e-10 Score=130.17 Aligned_cols=68 Identities=37% Similarity=0.572 Sum_probs=59.1
Q ss_pred HHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 173 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 173 ~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
....+...+...++|+++++..+..++... +++||.||||||||++|+.+|+.++.+|++++++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~----------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAG----------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcC----------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 445567778888999999998888887654 8999999999999999999999999999999998
Q ss_pred cccc
Q psy2392 253 KFTE 256 (1165)
Q Consensus 253 ~~~~ 256 (1165)
....
T Consensus 78 ~~l~ 81 (329)
T COG0714 78 PDLL 81 (329)
T ss_pred CCCC
Confidence 7544
No 250
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.06 E-value=4.4e-09 Score=124.24 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC-C
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF-P 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~-~ 1096 (1165)
..||+|||+|.+..... ..+-..|+..++.. ...++.+|+.|.-. .-+..+.|.+.+|+ +
T Consensus 139 ~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~~---------~~~~v~vI~i~~~~-~~~~~l~~~~~s~~~~ 199 (394)
T PRK00411 139 VLIVALDDINYLFEKEG---------NDVLYSLLRAHEEY---------PGARIGVIGISSDL-TFLYILDPRVKSVFRP 199 (394)
T ss_pred EEEEEECCHhHhhccCC---------chHHHHHHHhhhcc---------CCCeEEEEEEECCc-chhhhcCHHHHhcCCc
Confidence 45899999999983211 01334444444321 12367788877621 12234678888887 5
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.++.|+|++.+++.+||... .+ .-+. .-.|++++++.|++.+..
T Consensus 200 ~~i~f~py~~~e~~~il~~r----~~---~~~~----~~~~~~~~l~~i~~~~~~ 243 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDR----VE---EGFY----PGVVDDEVLDLIADLTAR 243 (394)
T ss_pred ceeecCCCCHHHHHHHHHHH----HH---hhcc----cCCCCHhHHHHHHHHHHH
Confidence 67899999999999999822 11 1011 124899999999988754
No 251
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.05 E-value=2.3e-09 Score=133.90 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=91.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee-eecee--ecCceEEEEEeCCcccCCC--CCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGI--IKTDHILFIASGAFHLAKP--SDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~-~~~~~--~~t~~ilfI~~gaf~~~~p--~~l~pel 493 (1165)
..||+|||||+++.+. +|..||..+|.+.+. ++.|. ....++.+|++. +| ..|.++|
T Consensus 126 ~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~-----np~eg~l~~~L 187 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM-----NPEEGDLRPQL 187 (633)
T ss_pred CCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec-----CCCCCCCCHHH
Confidence 5789999999999876 777999999865432 22221 122456677763 34 3588999
Q ss_pred hCCCCeeEecCCCC-HHHHHHHHhhhhH------h----------HHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc
Q psy2392 494 QGRFPIRVELDSLS-ISDFTRIMTSTNV------C----------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 556 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~-~~~l~~Il~~~~~------~----------l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~ 556 (1165)
+.||++.|.+.++. .++..+|+..... . .+..........--.+.+++++++.|+..+...
T Consensus 188 ~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~-- 265 (633)
T TIGR02442 188 LDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEF-- 265 (633)
T ss_pred HhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh--
Confidence 99999999998875 4555666642100 0 000000011111113577999999999999875
Q ss_pred cCCcc-CcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 557 RTENI-GARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 557 ~~~~~-GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
++ |.|....++.-.-.-... ... -.|+.+.|++.+
T Consensus 266 ---~i~s~Ra~i~~~r~Ara~AaL--~gr-~~V~~~Dv~~A~ 301 (633)
T TIGR02442 266 ---GVDGHRADIVMARAARALAAL--DGR-RRVTAEDVREAA 301 (633)
T ss_pred ---CCCCccHHHHHHHHHHHHHHH--cCC-CcCCHHHHHHHH
Confidence 34 567766655433222111 111 245666665543
No 252
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=4.3e-10 Score=130.80 Aligned_cols=207 Identities=20% Similarity=0.311 Sum_probs=142.1
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc----CCCeEEEecCCcccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATKFTEV 855 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l----~~~fi~l~~se~~~~ 855 (1165)
.++++|....-+.+.+.+... . +.-.++|++|+||+||+.+|++|.... ..||+.+||+.|.+.
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~------a------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAY------A------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhccCHHHHHHHHHHHhh------C------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 367889988888877777641 1 113689999999999999999998554 579999999997654
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
....++|+.. ++.|+++... ++|.
T Consensus 145 --------~~~~eLFG~~-------------------------------------kGaftGa~~~-----------k~Gl 168 (403)
T COG1221 145 --------LQEAELFGHE-------------------------------------KGAFTGAQGG-----------KAGL 168 (403)
T ss_pred --------HHHHHHhccc-------------------------------------cceeecccCC-----------cCch
Confidence 3455577765 2334432110 1222
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
+ +.|
T Consensus 169 f------------------------------------------------------------------------e~A---- 172 (403)
T COG1221 169 F------------------------------------------------------------------------EQA---- 172 (403)
T ss_pred h------------------------------------------------------------------------eec----
Confidence 2 333
Q ss_pred hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--eccCceEEEEecCCCCCCCCCCCch--hh
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHLAKPSDLIP--EL 1091 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--~~~t~~ilfI~~gaf~~~~p~dl~p--el 1091 (1165)
+.|++|+|||..+... +|.-||.++|.+.+. +.| .....++.+|||.+- .-++.++. .|
T Consensus 173 -~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~-rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl 235 (403)
T COG1221 173 -NGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYR-RVGGSQPRPVDVRLICATTE--DLEEAVLAGADL 235 (403)
T ss_pred -CCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceE-ecCCCCCcCCCceeeecccc--CHHHHHHhhcch
Confidence 7899999999999876 899999999976655 344 355677889999762 12234555 77
Q ss_pred hc-cCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceE-eCHHHHHHHHHHHhcc
Q psy2392 1092 QG-RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE-FVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~g-R~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~-~~~~ai~~ia~~a~~~ 1152 (1165)
.. |.+++|+++||-+. ...|+--.++ .+++++.-+ |..+. ++++|++.+-.+.+..
T Consensus 236 ~~rl~~~~I~LPpLrER-~~Di~~L~e~-Fl~~~~~~l---~~~~~~~~~~a~~~L~~y~~pG 293 (403)
T COG1221 236 TRRLNILTITLPPLRER-KEDILLLAEH-FLKSEARRL---GLPLSVDSPEALRALLAYDWPG 293 (403)
T ss_pred hhhhcCceecCCChhhc-hhhHHHHHHH-HHHHHHHHc---CCCCCCCCHHHHHHHHhCCCCC
Confidence 77 79999999999987 6666654433 344444333 44333 3358999998776666
No 253
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.04 E-value=1.4e-09 Score=133.83 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=90.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+.+++.+.+....+ .....++-+|++.+... .....|.++|.
T Consensus 290 ~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~ 356 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356 (534)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHH
Confidence 5799999999999876 7779999998654332111 11122455777754321 12345889999
Q ss_pred CCCCe-eEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 495 GRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 495 ~R~~~-~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.||.. .|.++||. .+|+..++ ..++.++.. ..|..+.|++++++.|..+.. .+..|-|+++++
T Consensus 357 ~rl~~~~i~lPpLreR~eDi~~L~----~~~l~~~~~---~~~~~~~~s~~a~~~L~~~~W-------PGNvrEL~~v~~ 422 (534)
T TIGR01817 357 YRINVVPIFLPPLRERREDIPLLA----EAFLEKFNR---ENGRPLTITPSAIRVLMSCKW-------PGNVRELENCLE 422 (534)
T ss_pred HHhcCCeeeCCCcccccccHHHHH----HHHHHHHHH---HcCCCCCCCHHHHHHHHhCCC-------CChHHHHHHHHH
Confidence 99864 68899998 68888887 345554433 234457899999999987553 467899999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+++.
T Consensus 423 ~a~~ 426 (534)
T TIGR01817 423 RTAT 426 (534)
T ss_pred HHHH
Confidence 9874
No 254
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.04 E-value=7.2e-10 Score=122.25 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=65.7
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---CchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~gR~ 1095 (1165)
-++||||||.+..... ..+.++..+...+|. .++-+|.+|. ..|.. +.|.|.+||
T Consensus 99 dlliiDdi~~~~~~~~-------~~~~lf~l~n~~~e~------------g~~~li~ts~---~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 99 SLVCIDNIECIAGDEL-------WEMAIFDLYNRILES------------GRTRLLITGD---RPPRQLNLGLPDLASRL 156 (235)
T ss_pred CEEEEeChhhhcCCHH-------HHHHHHHHHHHHHHc------------CCCeEEEeCC---CChHHcCcccHHHHHHH
Confidence 4899999999976421 122244444455552 2222445554 23433 579999999
Q ss_pred C--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 P--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. ..++|++++.+++.+||+ .....+|+ .++++++++|++.+..
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~-----------~~a~~~~~--~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQ-----------LRARLRGF--ELPEDVGRFLLKRLDR 201 (235)
T ss_pred hCCceeeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhhcC
Confidence 4 557999999999999988 22233464 7899999999987753
No 255
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.2e-10 Score=112.58 Aligned_cols=154 Identities=64% Similarity=0.957 Sum_probs=144.7
Q ss_pred cccceeeeeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2392 18 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVE 97 (1165)
Q Consensus 18 ~~~~~~laLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ 97 (1165)
|-+|||++..++.-.+||+.....+.+.+-|-.|-.-|+||..+|+.-...+++++++.+.++..++|.|.+..++++|+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raave 81 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVE 81 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 56899999999999999999999999999999999999999878998999999999999999999999999999999999
Q ss_pred HHHhhcCCCCchhHHHHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhh
Q psy2392 98 LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKS 171 (1165)
Q Consensus 98 ls~rYi~~r~lPDkalld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~ 171 (1165)
|++.|.+||+|....++...+.+.....+++.+++++|++.+.++++.+.|+...|++|.+.+.+..++|.+..
T Consensus 82 laKdwr~Dk~lr~LEAmllVad~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~~s 155 (178)
T COG5405 82 LAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIAEKS 155 (178)
T ss_pred HHHhhhhhhHHHHHhhheeEeCCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999999999999888888888888888999999999999999999999999999999999998888887543
No 256
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=3e-09 Score=122.01 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=68.8
Q ss_pred ccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCc
Q psy2392 380 RKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT 459 (1165)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~ 459 (1165)
+++...|++.+++.+.......-+. ..+.|++||++|+++.. .++.||+.+|..
T Consensus 98 ~~~~~~I~id~ir~i~~~l~~~p~~-------------~~~kVvII~~ae~m~~~-------------aaNaLLK~LEEP 151 (314)
T PRK07399 98 RKAPPQIRLEQIREIKRFLSRPPLE-------------APRKVVVIEDAETMNEA-------------AANALLKTLEEP 151 (314)
T ss_pred ccccccCcHHHHHHHHHHHccCccc-------------CCceEEEEEchhhcCHH-------------HHHHHHHHHhCC
Confidence 3444567777877765443322221 25789999999999866 566999999962
Q ss_pred eeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 460 TVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 460 ~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
. +.+||... ++|+.+.|.+++|+.+ +.|.+++.+++.++|.
T Consensus 152 p-----------~~~fILi~----~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 152 G-----------NGTLILIA----PSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLK 192 (314)
T ss_pred C-----------CCeEEEEE----CChHhCcHHHHhhceE-EecCCCCHHHHHHHHH
Confidence 1 22454442 4788999999999865 6999999999999985
No 257
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.03 E-value=4e-09 Score=118.31 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=58.9
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCcccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGY 857 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~Gy 857 (1165)
.+-++||.+|.++.-..+..- +.|-. ..+++|+.||||+|||.||-.+|+++| .||+.+++|++.+. -
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mi--k~gk~-------aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~-E 107 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMI--KQGKM-------AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSL-E 107 (450)
T ss_pred CCcccchHHHHHhhhHHHHHH--HhCcc-------cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeee-c
Confidence 467899999987755444321 22211 147999999999999999999999995 89999999999653 1
Q ss_pred cccChhhHHHHHHHHH
Q psy2392 858 VGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a 873 (1165)
+.. ...+.+.|+++
T Consensus 108 ~kK--TE~L~qa~Rra 121 (450)
T COG1224 108 VKK--TEALTQALRRA 121 (450)
T ss_pred ccH--HHHHHHHHHHh
Confidence 111 23466666655
No 258
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.03 E-value=1.4e-09 Score=125.61 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=81.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..||.+++...+.. .|. ....++-+||+..-.. .....|.++|
T Consensus 93 ~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~-~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL 158 (329)
T TIGR02974 93 DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFER-VGGSQTLQVDVRLVCATNADLPALAAEGRFRADL 158 (329)
T ss_pred CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEe-cCCCceeccceEEEEechhhHHHHhhcCchHHHH
Confidence 6899999999999876 9999999998755432 221 1234567788765322 2234678999
Q ss_pred hccC-CeEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCc--eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~--l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| .+.|+++||. .+|+..++. ..+.++..- .|.. ..|+++|++.|..+..-.
T Consensus 159 ~~rl~~~~i~lPpLReR~eDI~~L~~----~fl~~~~~~---~~~~~~~~ls~~a~~~L~~y~WPG 217 (329)
T TIGR02974 159 LDRLAFDVITLPPLRERQEDIMLLAE----HFAIRMARE---LGLPLFPGFTPQAREQLLEYHWPG 217 (329)
T ss_pred HHHhcchhcCCCchhhhhhhHHHHHH----HHHHHHHHH---hCCCCCCCcCHHHHHHHHhCCCCc
Confidence 9999 4578999998 578877776 455554433 3444 479999999998766555
No 259
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.03 E-value=2.1e-09 Score=123.85 Aligned_cols=154 Identities=16% Similarity=0.246 Sum_probs=91.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee-eeceee--cCceEEEEEeCCcccCCCC--CCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPS--DLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~-~~~~~~--~t~~ilfI~~gaf~~~~p~--~l~pel 493 (1165)
.+|++|||||+.+.+. +|..|+..|+.+.++ ++.|.. ....+++|++. +|. .+.++|
T Consensus 128 ~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~-----NP~e~~l~~aL 189 (334)
T PRK13407 128 NRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSG-----NPEEGELRPQL 189 (334)
T ss_pred CCCeEEecChHhCCHH-------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecC-----CcccCCCCHHH
Confidence 5689999999999766 777999999766543 233321 12345556663 342 488899
Q ss_pred hCCCCeeEecCCCCH-HHHHHHHhhhhH------hHH----------HHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc
Q psy2392 494 QGRFPIRVELDSLSI-SDFTRIMTSTNV------CLT----------KQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 556 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~~-~~l~~Il~~~~~------~l~----------~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~ 556 (1165)
+.||...|.+.++.. ++..+|+..... ... .+....+...=-.+.++++.++++++.+....
T Consensus 190 ldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~- 268 (334)
T PRK13407 190 LDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALG- 268 (334)
T ss_pred HhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHC-
Confidence 999999999998877 777777763211 000 01111111112346789999999999997741
Q ss_pred cCCccCcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 557 RTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 557 ~~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
.-|-|.-..++...-..... .++ -.|+.+.|+...
T Consensus 269 ---~~s~Ra~i~l~~aA~a~A~l--~Gr-~~V~~~Di~~~~ 303 (334)
T PRK13407 269 ---SDGLRGELTLLRAARALAAF--EGA-EAVGRSHLRSVA 303 (334)
T ss_pred ---CCCchHHHHHHHHHHHHHHH--cCC-CeeCHHHHHHHH
Confidence 22555555444333222211 111 346777665443
No 260
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.01 E-value=7.5e-10 Score=137.14 Aligned_cols=111 Identities=19% Similarity=0.379 Sum_probs=73.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-------eccC----ceEEEEecCCCCCCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------IIKT----DHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-------~~~t----~~ilfI~~gaf~~~~p~ 1085 (1165)
+.|++||||++.+... +|..|+..++...+...-+ .+.+ -++-+|++|.-. .-.
T Consensus 217 ngGtL~Ldei~~L~~~-------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~--~l~ 281 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLE-------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--DLE 281 (608)
T ss_pred CCCEEEEEChHhCCHH-------------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH--HHh
Confidence 6799999999999854 8899999997665443111 1111 245678887521 124
Q ss_pred CCchhhhccCC---eEEEcCCC---CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1086 DLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1086 dl~pel~gR~~---i~v~l~~l---~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|+|+.||+ +.+.|++. +.+...+++. .+.+ .++.+|....|+++|+++|.+.+.
T Consensus 282 ~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-----~i~~---~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 282 GMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-----FVAQ---EVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred hcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-----HHHH---HHHHhCCCCcCCHHHHHHHHHHHH
Confidence 68999999999 88877654 5666555544 2222 233455445899999999987654
No 261
>PRK04132 replication factor C small subunit; Provisional
Probab=99.00 E-value=2.3e-09 Score=135.29 Aligned_cols=106 Identities=28% Similarity=0.398 Sum_probs=85.6
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
+.||||||+|++++. .|+.||++||- ...++.||++ +++|+.++|.+++||.+
T Consensus 631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEe----------p~~~~~FILi----~N~~~kIi~tIrSRC~~ 683 (846)
T PRK04132 631 FKIIFLDEADALTQD-------------AQQALRRTMEM----------FSSNVRFILS----CNYSSKIIEPIQSRCAI 683 (846)
T ss_pred CEEEEEECcccCCHH-------------HHHHHHHHhhC----------CCCCeEEEEE----eCChhhCchHHhhhceE
Confidence 579999999999865 67799999995 2346667776 35788899999999966
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+.|++|+.+++.++|. .++..+|+ .++++++..|+..| +++.|...+.++.+.
T Consensus 684 -i~F~~ls~~~i~~~L~-----------~I~~~Egi--~i~~e~L~~Ia~~s--------~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 684 -FRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAA 736 (846)
T ss_pred -EeCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 5999999999998884 23344565 57899999999888 688999999998764
No 262
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.00 E-value=1.2e-09 Score=131.69 Aligned_cols=134 Identities=17% Similarity=0.332 Sum_probs=89.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
...+++|||||.+.... ..|..|+.+++... .....++|++. ..|.. +.|.|.+
T Consensus 211 ~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~--------~~~~~iiits~----~~p~~l~~l~~~l~S 267 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALH--------EAGKQIVLTSD----RPPKELPGLEERLRS 267 (450)
T ss_pred cCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHH--------HCCCcEEEECC----CCHHHHHHHHHHHHh
Confidence 35699999999986431 24556776665321 11112344331 23433 6789999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..|+|++++.+++.+||+ ..+... .+.++++++++||+.+ ...+|.|..+|.++
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~-----------~~~~~~--~~~l~~e~l~~ia~~~--------~~~~R~l~~~l~~l 326 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILK-----------KKAEEE--GIDLPDEVLEFIAKNI--------TSNVRELEGALNRL 326 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHH-----------HHHHHc--CCCCCHHHHHHHHcCc--------CCCHHHHHHHHHHH
Confidence 995 678999999999999994 112223 4578999999999877 46789999999988
Q ss_pred HHHhhcccCCCeeEEcccccccccccC
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
....... + -.||.+.+++.+.+.
T Consensus 327 ~~~~~~~--~--~~it~~~~~~~l~~~ 349 (450)
T PRK00149 327 IAYASLT--G--KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHhh--C--CCCCHHHHHHHHHHh
Confidence 6543322 1 237777777777654
No 263
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=5.2e-10 Score=112.71 Aligned_cols=66 Identities=30% Similarity=0.399 Sum_probs=43.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--ceeecCc-------eEEEEEeCCcccCCCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--YGIIKTD-------HILFIASGAFHLAKPSDL 489 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--~~~~~t~-------~ilfI~~gaf~~~~p~~l 489 (1165)
+.+|+|||||+++.+. ++..|++++|+..+... ....... +..+|++++-....-..+
T Consensus 65 ~~~il~lDEin~a~~~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l 131 (139)
T PF07728_consen 65 KGGILVLDEINRAPPE-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKEL 131 (139)
T ss_dssp EEEEEEESSCGG--HH-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTT
T ss_pred ceeEEEECCcccCCHH-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcC
Confidence 5789999999998755 88899999998776632 2233333 378888865332233479
Q ss_pred chhhhCCC
Q psy2392 490 IPELQGRF 497 (1165)
Q Consensus 490 ~pel~~R~ 497 (1165)
.|+|++||
T Consensus 132 ~~al~~Rf 139 (139)
T PF07728_consen 132 SPALLDRF 139 (139)
T ss_dssp CHHHHTT-
T ss_pred CHHHHhhC
Confidence 99999997
No 264
>PRK05642 DNA replication initiation factor; Validated
Probab=99.00 E-value=1.7e-09 Score=119.15 Aligned_cols=134 Identities=17% Similarity=0.297 Sum_probs=85.4
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC-
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~- 498 (1165)
..+++||+|+.+..... .|..|+.++.... .....++|++ ......-..+.|.|.+||.
T Consensus 98 ~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n~~~--------~~g~~ilits-~~~p~~l~~~~~~L~SRl~~ 157 (234)
T PRK05642 98 YELVCLDDLDVIAGKAD-----------WEEALFHLFNRLR--------DSGRRLLLAA-SKSPRELPIKLPDLKSRLTL 157 (234)
T ss_pred CCEEEEechhhhcCChH-----------HHHHHHHHHHHHH--------hcCCEEEEeC-CCCHHHcCccCccHHHHHhc
Confidence 45899999998864322 3556777764311 1112233433 2111111235799999983
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..+.+++|+.+++.+|++. + ....| +.++++++++|++.+ ...+|.|..+++++.. .
T Consensus 158 gl~~~l~~~~~e~~~~il~~----------k-a~~~~--~~l~~ev~~~L~~~~--------~~d~r~l~~~l~~l~~-~ 215 (234)
T PRK05642 158 ALVFQMRGLSDEDKLRALQL----------R-ASRRG--LHLTDEVGHFILTRG--------TRSMSALFDLLERLDQ-A 215 (234)
T ss_pred CeeeecCCCCHHHHHHHHHH----------H-HHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHH-H
Confidence 6679999999999999841 1 12234 578899999999988 5679999999998864 2
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+... +. .||...+++.++
T Consensus 216 ~l~~-~~--~it~~~~~~~L~ 233 (234)
T PRK05642 216 SLQA-QR--KLTIPFLKETLG 233 (234)
T ss_pred HHHc-CC--cCCHHHHHHHhc
Confidence 2221 12 367666666553
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=2.4e-09 Score=125.06 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=66.8
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
..|+|.+++.+.......- ....+.||+|||+|.++.. .++.||..+|..
T Consensus 119 ~~I~VdqiR~l~~~~~~~~-------------~~~~~kVviIDead~m~~~-------------aanaLLK~LEep---- 168 (365)
T PRK07471 119 TVITVDEVRELISFFGLTA-------------AEGGWRVVIVDTADEMNAN-------------AANALLKVLEEP---- 168 (365)
T ss_pred ccccHHHHHHHHHHhCcCc-------------ccCCCEEEEEechHhcCHH-------------HHHHHHHHHhcC----
Confidence 5577888777664422110 1124679999999999876 566999999852
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
..+.+||.. +.+|+.+.|.+++|+.. +.|.+|+.+++.++|.
T Consensus 169 ------p~~~~~IL~----t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 169 ------PARSLFLLV----SHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALA 210 (365)
T ss_pred ------CCCeEEEEE----ECCchhchHHhhccceE-EECCCCCHHHHHHHHH
Confidence 344556654 25677889999999875 6999999999998884
No 266
>KOG0744|consensus
Probab=98.99 E-value=1.3e-09 Score=120.73 Aligned_cols=84 Identities=14% Similarity=0.244 Sum_probs=59.4
Q ss_pred eeeehhhhhhhccCCCC-CCCCcc-chhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1020 IIFLDEIDKITTRSSQN-NNTDIS-RAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~-~~~~~~-~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.|+|||+..|+..+.+. ++++.| .-.|-++||.-++.- -.-.|++..|+.. --+.+.-+|..|-.|
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl--------K~~~NvliL~TSN----l~~siD~AfVDRADi 320 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL--------KRYPNVLILATSN----LTDSIDVAFVDRADI 320 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh--------ccCCCEEEEeccc----hHHHHHHHhhhHhhh
Confidence 57899999999876432 333332 234778899888731 1235566555532 123466899999999
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+....+++...++.|++.
T Consensus 321 ~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKS 338 (423)
T ss_pred eeecCCccHHHHHHHHHH
Confidence 999999999999999993
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.99 E-value=3.5e-09 Score=115.86 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC--
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF-- 497 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~-- 497 (1165)
..+|||||+|.+... .|..|+.+++... ......+|.++... .....+.+.|.+||
T Consensus 91 ~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~--------~~~~~~vl~~~~~~-~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 91 AELYAVDDVERLDDA-------------QQIALFNLFNRVR--------AHGQGALLVAGPAA-PLALPLREDLRTRLGW 148 (227)
T ss_pred CCEEEEeChhhcCch-------------HHHHHHHHHHHHH--------HcCCcEEEEeCCCC-HHhCCCCHHHHHHHhc
Confidence 569999999987543 3456767665421 11122234443321 11224679999998
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
...|.++||+.++...++. +....+| +.++++++++|++.. ....|.|..+++.+-...
T Consensus 149 ~~~i~l~pl~~~~~~~~l~-----------~~~~~~~--v~l~~~al~~L~~~~--------~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 149 GLVYELKPLSDADKIAALK-----------AAAAERG--LQLADEVPDYLLTHF--------RRDMPSLMALLDALDRYS 207 (227)
T ss_pred CeEEEecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHH
Confidence 4789999999998777773 2223345 578999999999844 467899999999864322
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. .....||...+++.++
T Consensus 208 ~----~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 L----EQKRPVTLPLLREMLA 224 (227)
T ss_pred H----HhCCCCCHHHHHHHHh
Confidence 1 1113477777776654
No 268
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.99 E-value=4.1e-09 Score=112.03 Aligned_cols=86 Identities=17% Similarity=0.394 Sum_probs=66.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.||+|||+|++++. .|+.||..+|.. .++.+||... +++..+.|++++|+.
T Consensus 96 ~~kviiide~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~il~~----~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 96 GRRVVIIEDAERMNEA-------------AANALLKTLEEP----------PPNTLFILIT----PSPEKLLPTIRSRCQ 148 (188)
T ss_pred CeEEEEEechhhhCHH-------------HHHHHHHHhcCC----------CCCeEEEEEE----CChHhChHHHHhhcE
Confidence 5679999999999865 456899999862 2344555542 356789999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
.|.|.+++.+++.++|.. .| +++++++.|++.+
T Consensus 149 -~~~~~~~~~~~~~~~l~~---------------~g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIR---------------QG----ISEEAAELLLALA 181 (188)
T ss_pred -EeeCCCCCHHHHHHHHHH---------------cC----CCHHHHHHHHHHc
Confidence 679999999999888841 13 5789999998877
No 269
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-09 Score=126.36 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=90.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCcccCCCCCCch--hhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLAKPSDLIP--ELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~~~p~~l~p--el~~ 495 (1165)
..|++|+|||+.+-+. +|.-||.++|.+.++.-. -.....++.+|||.+- .-++.+.. .|..
T Consensus 173 ~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~ 237 (403)
T COG1221 173 NGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTR 237 (403)
T ss_pred CCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhh
Confidence 6899999999999876 677999999977655211 1345567778888642 22234555 6776
Q ss_pred -CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeC-HHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 -RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 -R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~-~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|++.+|.++||.+. ...|+-..++- +.++. ...+..+... +++++.|..+.. .+..|-|++.++++
T Consensus 238 rl~~~~I~LPpLrER-~~Di~~L~e~F-l~~~~---~~l~~~~~~~~~~a~~~L~~y~~-------pGNirELkN~Ve~~ 305 (403)
T COG1221 238 RLNILTITLPPLRER-KEDILLLAEHF-LKSEA---RRLGLPLSVDSPEALRALLAYDW-------PGNIRELKNLVERA 305 (403)
T ss_pred hhcCceecCCChhhc-hhhHHHHHHHH-HHHHH---HHcCCCCCCCCHHHHHHHHhCCC-------CCcHHHHHHHHHHH
Confidence 89999999999988 67776433332 23332 2335544444 588888876543 36689999999999
Q ss_pred HHHh
Q psy2392 574 LEEV 577 (1165)
Q Consensus 574 l~~~ 577 (1165)
+...
T Consensus 306 ~~~~ 309 (403)
T COG1221 306 VAQA 309 (403)
T ss_pred HHHh
Confidence 8765
No 270
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=4.5e-09 Score=120.79 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=55.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .++.||+.+|.. .++.+||... .+|+.+.|.+++|+.
T Consensus 93 ~~kv~iI~~ad~m~~~-------------a~naLLK~LEep----------p~~t~~il~~----~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEP----------PKGVFIILLC----ENLEQILDTIKSRCQ 145 (313)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHHhhce
Confidence 5679999999999765 566999999962 3455565542 468899999999997
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
.+.|.+++.+++.+.|.
T Consensus 146 -~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 146 -IYKLNRLSKEEIEKFIS 162 (313)
T ss_pred -eeeCCCcCHHHHHHHHH
Confidence 57999999999887773
No 271
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.97 E-value=3.4e-09 Score=122.64 Aligned_cols=69 Identities=36% Similarity=0.555 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecC
Q psy2392 771 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850 (1165)
Q Consensus 771 ~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~s 850 (1165)
....+...+...++|+++++..+..++... +++||.||||||||++|+.+|+.++.+|++++|.
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~----------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAG----------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcC----------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 345566677788999999998888877643 7899999999999999999999999999999998
Q ss_pred Ccccc
Q psy2392 851 KFTEV 855 (1165)
Q Consensus 851 e~~~~ 855 (1165)
....+
T Consensus 78 ~~l~p 82 (329)
T COG0714 78 PDLLP 82 (329)
T ss_pred CCCCH
Confidence 75543
No 272
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.97 E-value=6.4e-09 Score=120.20 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=83.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ecee--ecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~--~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
..|++|||||+.+.+. +|..||..|+.+.++. +-|. .....+++|++.+-. ...|.|+|.-
T Consensus 144 ~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~---eg~l~~~Lld 207 (350)
T CHL00081 144 NRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE---EGELRPQLLD 207 (350)
T ss_pred CCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc---cCCCCHHHHH
Confidence 5899999999999876 7778999887544332 2221 122345566654311 1249999999
Q ss_pred CCCeeEecCCCC-HHHHHHHHhhhhH------hHHHH--------HHHH--HhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSLS-ISDFTRIMTSTNV------CLTKQ--------YEAL--LATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L~-~~~l~~Il~~~~~------~l~~~--------~~~l--l~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||.+.|.+..++ .++-.+|++.... ...++ ...+ +...=-.+.++++.+++|++++...+
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~--- 284 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD--- 284 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC---
Confidence 999999999998 4777788863211 00000 0111 11112346789999999999998742
Q ss_pred CccCcchhHHHHH
Q psy2392 559 ENIGARRLYTAME 571 (1165)
Q Consensus 559 ~~~GAR~l~~~ie 571 (1165)
.-|=|.-..++.
T Consensus 285 -~~s~Ra~i~l~r 296 (350)
T CHL00081 285 -VDGLRGDIVTNR 296 (350)
T ss_pred -CCCChHHHHHHH
Confidence 234555554443
No 273
>KOG0742|consensus
Probab=98.96 E-value=3.6e-09 Score=119.73 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=74.1
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
++||||.|.+.-.+....-++ .||.-|-.+ ..+-|.-..+-+|.+++ +.|.||.-..-.|+...|
T Consensus 446 llFIDEADAFLceRnktymSE-----aqRsaLNAl-----LfRTGdqSrdivLvlAt-----NrpgdlDsAV~DRide~v 510 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSE-----AQRSALNAL-----LFRTGDQSRDIVLVLAT-----NRPGDLDSAVNDRIDEVV 510 (630)
T ss_pred EEEehhhHHHHHHhchhhhcH-----HHHHHHHHH-----HHHhcccccceEEEecc-----CCccchhHHHHhhhhhee
Confidence 899999999776543311112 344333211 01224444455555554 789999999999999999
Q ss_pred EcCCCCHHHHHHHHhhhHHHhH---------HHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1100 ELDSLSISDFTRIMTSTNVCLT---------KQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~~~~~~l~---------~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+|+-+++++..++|..-.+..+ -....||+.+--+|++..+.-..+++.++..
T Consensus 511 eFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk 572 (630)
T KOG0742|consen 511 EFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK 572 (630)
T ss_pred ecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh
Confidence 9999999999999983322211 1134566666677777665555554444443
No 274
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.96 E-value=3.1e-09 Score=127.26 Aligned_cols=140 Identities=15% Similarity=0.269 Sum_probs=88.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+++||||+.+.... ..|..|+.++..-. .....++ .++......-..+.+.|.+||.
T Consensus 202 ~~dvLiIDDiq~l~~k~-----------~~qeelf~l~N~l~--------~~~k~II-lts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG-----------ATQEEFFHTFNSLH--------TEGKLIV-ISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred cCCEEEEcchhhhcCCh-----------hhHHHHHHHHHHHH--------HCCCcEE-EecCCCHHHHhhhHHHHHhhhc
Confidence 45799999999986432 24556665543211 0112223 3322111111246789999995
Q ss_pred --eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 499 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 499 --~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
..+.+.+|+.+++..||+ ..++..| +.++++++++|+... ..+.|.|...+++++..
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~-----------~k~~~~~--~~l~~evl~~la~~~--------~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLE-----------RKAEALS--IRIEETALDFLIEAL--------SSNVKSLLHALTLLAKR 320 (445)
T ss_pred CCeEEecCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHH
Confidence 889999999999999994 1122234 578999999999866 46899999999998533
Q ss_pred hhcccCCCeeEEcccccccccccC
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
..|..-. ...||.+.+++.+.+.
T Consensus 321 ~a~~~~~-~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 321 VAYKKLS-HQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHhh-CCCCCHHHHHHHHHHh
Confidence 3232111 1237777777776643
No 275
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.96 E-value=5e-09 Score=126.76 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=82.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ece--eecCceEEEEEeCCcc------c------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFH------L------ 483 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~--~~~t~~ilfI~~gaf~------~------ 483 (1165)
.+|++|||||+++.+. +|..|+..||.+.++. +.+ .....++.+|++.+-. .
T Consensus 295 ~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~ 361 (499)
T TIGR00368 295 HNGVLFLDELPEFKRS-------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCR 361 (499)
T ss_pred CCCeEecCChhhCCHH-------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCccccc
Confidence 6799999999998765 7789999998776542 222 1122466677765421 1
Q ss_pred CCC-------CCCchhhhCCCCeeEecCCCCHHHHHH---------HHhhhhHhHHHHHHHHHhhc-CCe----------
Q psy2392 484 AKP-------SDLIPELQGRFPIRVELDSLSISDFTR---------IMTSTNVCLTKQYEALLATE-GIK---------- 536 (1165)
Q Consensus 484 ~~p-------~~l~pel~~R~~~~v~~~~L~~~~l~~---------Il~~~~~~l~~~~~~ll~~~-~i~---------- 536 (1165)
+.| ..+.+.|+.||++.|.+.+++.+++.+ |-.....+...|..+ +... ++.
T Consensus 362 c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R-~~~~~~~~~N~~l~~~~l 440 (499)
T TIGR00368 362 CSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIR-YEKFANINKNADLNSDEI 440 (499)
T ss_pred CCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCcccccCCHHHH
Confidence 111 138899999999999999998887643 111111111222222 2111 111
Q ss_pred ---eEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 537 ---IEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 537 ---l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
..+++++.+.|....... +..+|..++++.
T Consensus 441 ~~~~~l~~~~~~~l~~a~~~~-----~lS~R~~~rilr 473 (499)
T TIGR00368 441 EQFCKLSAIDANDLEGALNKL-----GLSSRATHRILK 473 (499)
T ss_pred HhhcCCCHHHHHHHHHHHHhc-----CCCchHHHHHHH
Confidence 245677777776666553 678999998874
No 276
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.95 E-value=3.7e-09 Score=122.05 Aligned_cols=120 Identities=17% Similarity=0.297 Sum_probs=76.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccc-eeeeeeccC--ceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV-NTKYGIIKT--DHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v-~~k~~~~~t--~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
++|++|||||+.+... +|..||..|+...+ .++-|...+ ..+.+|++..- .-..|.|.|..
T Consensus 131 ~~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np---~eg~l~~~Lld 194 (337)
T TIGR02030 131 NRGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP---EEGELRPQLLD 194 (337)
T ss_pred cCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc---ccCCCCHHHHh
Confidence 5799999999998665 89999999975543 233332222 23455555321 11248899999
Q ss_pred cCCeEEEcCCCCH-HHHHHHHhhhHH------HhHHHH--------HHHH--hhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1094 RFPIRVELDSLSI-SDFTRIMTSTNV------CLTKQY--------EALL--ATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1094 R~~i~v~l~~l~~-~~l~~il~~~~~------~l~~q~--------~~l~--~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
||.+.+.+..+.. ++..+|++.... ...+.+ ..++ ...=-++.++|+++++|+.++...
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~ 270 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAEL 270 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHH
Confidence 9999999999976 777788874110 000000 1111 111123478999999999998764
No 277
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=4.5e-09 Score=114.39 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=63.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc-hhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~-pel~gR~~ 1096 (1165)
.+++||||+|.+.... ..|..|..+++... .... .+|+++...... .++. +.|.+|+.
T Consensus 91 ~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~--------~~~~-~iIits~~~~~~-~~~~~~~L~~r~~ 149 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVR--------EAGG-RLLIAGRAAPAQ-LPLRLPDLRTRLA 149 (226)
T ss_pred CCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHH--------HcCC-eEEEECCCChHH-CCcccHHHHHHHh
Confidence 4699999999986541 13666776665311 0111 244444422111 1233 88999984
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.+++|++|+.++...++. ..+...|+ .+++++++.|+.. ...
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~l~~L~~~-~~g 193 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQ-----------SRAARRGL--QLPDEVADYLLRH-GSR 193 (226)
T ss_pred cCeeEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHh-ccC
Confidence 788999999999988886 12233455 7899999999984 444
No 278
>PHA02244 ATPase-like protein
Probab=98.94 E-value=2.5e-08 Score=114.94 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceee-cCceEEEEEeCCccc-------CCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-------AKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~-~t~~ilfI~~gaf~~-------~~p~~l~ 490 (1165)
+.+++|||||+.+.+. +|..|++++++..+....+.+ ...+.-+|+|++-.. .-...+.
T Consensus 180 ~GgvLiLDEId~a~p~-------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~ 246 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKID 246 (383)
T ss_pred cCCEEEEeCcCcCCHH-------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccC
Confidence 5789999999998866 666888888866544322222 224566777765321 0124689
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHH---HHHHHHhhcCCeeEeCHHHHHHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK---QYEALLATEGIKIEFVDDGIQRLAE 549 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~---~~~~ll~~~~i~l~~~~~a~~~la~ 549 (1165)
++++.||- .|.|.-+++-+. .|+.. ...+.+ ..+..+..+|+...++-.++-.-++
T Consensus 247 ~AllDRFv-~I~~dyp~~~E~-~i~~~-~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 247 GATLDRFA-PIEFDYDEKIEH-LISNG-DEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred HHHHhhcE-EeeCCCCcHHHH-HHhhh-HHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 99999996 479998875443 33321 122222 2223344466666666554444333
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.94 E-value=2.1e-09 Score=127.87 Aligned_cols=136 Identities=18% Similarity=0.290 Sum_probs=87.4
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC-
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~- 498 (1165)
..+++|||||.+... +..|..|+.+++...- ....++|++ ......-..+.|.|.+||.
T Consensus 200 ~dlLiiDDi~~l~~~-----------~~~~~~l~~~~n~~~~--------~~~~iiits-~~~p~~l~~l~~~l~SRl~~ 259 (405)
T TIGR00362 200 VDLLLIDDIQFLAGK-----------ERTQEEFFHTFNALHE--------NGKQIVLTS-DRPPKELPGLEERLRSRFEW 259 (405)
T ss_pred CCEEEEehhhhhcCC-----------HHHHHHHHHHHHHHHH--------CCCCEEEec-CCCHHHHhhhhhhhhhhccC
Confidence 469999999998643 2346677776653110 111223333 2111111236688999996
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.|++++.+++..||. ..++..+ +.++++++++||+.. ....|.|..+|.++....
T Consensus 260 g~~v~i~~pd~~~r~~il~-----------~~~~~~~--~~l~~e~l~~ia~~~--------~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 260 GLVVDIEPPDLETRLAILQ-----------KKAEEEG--LELPDEVLEFIAKNI--------RSNVRELEGALNRLLAYA 318 (405)
T ss_pred CeEEEeCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHH
Confidence 579999999999999994 1223334 577899999999866 456788999988886544
Q ss_pred hcccCCCeeEEcccccccccccC
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
... + -.||.+.+++.+...
T Consensus 319 ~~~--~--~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 319 SLT--G--KPITLELAKEALKDL 337 (405)
T ss_pred HHh--C--CCCCHHHHHHHHHHh
Confidence 321 1 236777777766654
No 280
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-08 Score=117.28 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=89.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
..-||.|||+|.+....++ +-..|+..-+- ...++.+|+.++-..- ...|.|-+.+||.
T Consensus 123 ~~~IvvLDEid~L~~~~~~----------~LY~L~r~~~~----------~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~ 181 (366)
T COG1474 123 KTVIVILDEVDALVDKDGE----------VLYSLLRAPGE----------NKVKVSIIAVSNDDKF-LDYLDPRVKSSLG 181 (366)
T ss_pred CeEEEEEcchhhhccccch----------HHHHHHhhccc----------cceeEEEEEEeccHHH-HHHhhhhhhhccC
Confidence 4569999999999877432 33333333221 1445666666432111 3457788887754
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.|+|++.+++..||.. - ....-..-.+++++++.+|..+.. ..++||....++....+-+
T Consensus 182 ~~~I~F~pY~a~el~~Il~~----R-------~~~~~~~~~~~~~vl~lia~~~a~-----~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 182 PSEIVFPPYTAEELYDILRE----R-------VEEGFSAGVIDDDVLKLIAALVAA-----ESGDARKAIDILRRAGEIA 245 (366)
T ss_pred cceeeeCCCCHHHHHHHHHH----H-------HHhhccCCCcCccHHHHHHHHHHH-----cCccHHHHHHHHHHHHHHH
Confidence 4568999999999999951 1 111122336899999999999887 4668999999998887755
Q ss_pred hcccCCCeeEEcccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSR 596 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~ 596 (1165)
..+.. -+++.+.|+..
T Consensus 246 e~~~~---~~v~~~~v~~a 261 (366)
T COG1474 246 EREGS---RKVSEDHVREA 261 (366)
T ss_pred HhhCC---CCcCHHHHHHH
Confidence 33222 34676666654
No 281
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.93 E-value=1.2e-08 Score=117.67 Aligned_cols=272 Identities=15% Similarity=0.141 Sum_probs=144.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCC-------CeEEEec----
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA-------PFIKIEA---- 849 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~-------~fi~l~~---- 849 (1165)
++++|+++++..+...+... ..|+.. ....++|+||||||||++|++|++.++. +++.+.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~--a~g~~~------~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~ 122 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSA--AQGLEE------RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEE 122 (361)
T ss_pred hhccCcHHHHHHHHHHHHHH--HhcCCC------CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCC
Confidence 48999999999999988765 223222 1366899999999999999999999976 9999988
Q ss_pred CCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHH
Q psy2392 850 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 929 (1165)
Q Consensus 850 se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~ 929 (1165)
+...+. ..+--+. .+++.|...... + ++.++..|-. -.|..+..
T Consensus 123 sp~~e~-Pl~l~p~-~~r~~~~~~~~~-~----------------~~~~~~~l~p-----------------~c~~~l~~ 166 (361)
T smart00763 123 SPMHED-PLHLFPD-ELREDLEDEYGI-P----------------RRRLEGDLSP-----------------WCRKRLDE 166 (361)
T ss_pred CCCccC-CcccCCH-HHHHHHHHHhCC-C----------------hhhcCCCCCH-----------------HHHHHHHH
Confidence 555443 3333222 244444322111 0 0001100000 01111211
Q ss_pred hhccCCCCCeEEEEEecCCC--CcccccCC--cchHHHHHHHHHHHHhhCCC------CccceeeeHHHHHHHHHHHHHh
Q psy2392 930 RLREGALDNKEIEIELNDTG--PHMEIMSP--PGMEEMTAQIKTMFSVIGNH------RKKTRKIKIREAIKLLIDEEAN 999 (1165)
Q Consensus 930 ~l~~g~ld~r~v~i~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~tvk~a~~~l~~~~~~ 999 (1165)
. ..|.+..-.|.--.+... ..+..+.| .+..+ +..+.|.+.+. .+..+..
T Consensus 167 e-~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qd----i~~L~G~vd~~k~~~~~~~dp~a~--------------- 226 (361)
T smart00763 167 E-YGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQD----ISELTGKVDIRKLEIYSESDPRAF--------------- 226 (361)
T ss_pred H-hCCCcceEEEEEecCCeecceEEEEECCCCCCccc----HHHHhcccCHHHhcccCCCCCeEE---------------
Confidence 1 245444322221111111 11222222 12211 22222222211 0001111
Q ss_pred hcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-ee-eeccCceEEEEecC
Q psy2392 1000 KLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KY-GIIKTDHILFIASG 1077 (1165)
Q Consensus 1000 ~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~-~~~~t~~ilfI~~g 1077 (1165)
+-+..--+| ++||+-++||+|.... .|.+||.+++...+.. .+ +.+..+. +||++.
T Consensus 227 ---~~~G~l~~a-----NrGi~~f~Ei~K~~~~-------------~l~~LL~~~qE~~v~~~~~~~~~~~d~-liia~s 284 (361)
T smart00763 227 ---SYDGALNRA-----NRGILEFVEMFKADIK-------------FLHPLLTATQEGNIKGTGGFAMIPIDG-LIIAHS 284 (361)
T ss_pred ---eccCccccc-----cCceEEEeehhcCCHH-------------HHHHHhhhhhcceEecCCcccccccce-EEEEeC
Confidence 100111122 6799999999999877 8999999998777754 33 3455555 666663
Q ss_pred CCCC---CCCCCCchhhhccCCeEEEcCCC-CHHHHHHHHhhhHHHhHHHHHHHHhhc-CCceEeCHHHHHHHHHHHh
Q psy2392 1078 AFHL---AKPSDLIPELQGRFPIRVELDSL-SISDFTRIMTSTNVCLTKQYEALLATE-GIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1078 af~~---~~p~dl~pel~gR~~i~v~l~~l-~~~~l~~il~~~~~~l~~q~~~l~~~e-gv~l~~~~~ai~~ia~~a~ 1150 (1165)
+=.. -+-.....+|+.||-+ +.+.-+ +-++=.+|.+ +++... -....|.+-+++.+|..|.
T Consensus 285 Ne~e~~~~~~~k~~eaf~dR~~~-i~vpY~l~~~~E~~Iy~-----------k~~~~s~~~~~~~aP~~le~aa~~av 350 (361)
T smart00763 285 NESEWQRFKSNKKNEALLDRIIK-VKVPYCLRVSEEAQIYE-----------KLLRNSDLTEAHIAPHTLEMAALFSV 350 (361)
T ss_pred CHHHHhhhhccccchhhhhceEE-EeCCCcCCHHHHHHHHH-----------HHhccCcCcccccCchHHHHHHHHHH
Confidence 3110 0011346899999984 566543 4444444444 344432 2346788999998888775
No 282
>PRK06893 DNA replication initiation factor; Validated
Probab=98.93 E-value=2.4e-09 Score=117.61 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=65.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~g 1093 (1165)
+..+++|||||.+..... .|..|+.++.... .....++|.++. ..|+. ..|.|.+
T Consensus 91 ~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~--------~~~~~illits~---~~p~~l~~~~~~L~s 148 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIK--------EQGKTLLLISAD---CSPHALSIKLPDLAS 148 (229)
T ss_pred cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCCcEEEEeCC---CChHHccccchhHHH
Confidence 346999999999975421 3456776665211 112222333332 23433 3499999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|+. ..++|++++.++..+||+ ..+..+|+ .++++++++|++.+.
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~-----------~~a~~~~l--~l~~~v~~~L~~~~~ 194 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQ-----------RNAYQRGI--ELSDEVANFLLKRLD 194 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhcc
Confidence 975 567999999999999998 23334454 789999999998765
No 283
>PRK04132 replication factor C small subunit; Provisional
Probab=98.93 E-value=2.2e-09 Score=135.39 Aligned_cols=94 Identities=30% Similarity=0.406 Sum_probs=76.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|+++.. .|+.||++||.. +.++.||++ ++.|+.++|.+++||-+
T Consensus 631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEep----------~~~~~FILi----~N~~~kIi~tIrSRC~~ 683 (846)
T PRK04132 631 FKIIFLDEADALTQD-------------AQQALRRTMEMF----------SSNVRFILS----CNYSSKIIEPIQSRCAI 683 (846)
T ss_pred CEEEEEECcccCCHH-------------HHHHHHHHhhCC----------CCCeEEEEE----eCChhhCchHHhhhceE
Confidence 359999999999864 899999999952 345567766 46889999999999976
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.|++++.+++..+|. .++..||+ .++++++..|++.|...
T Consensus 684 -i~F~~ls~~~i~~~L~-----------~I~~~Egi--~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 684 -FRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIAEGD 724 (846)
T ss_pred -EeCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHcCCC
Confidence 5999999999998888 45566776 57899999999887654
No 284
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.92 E-value=1.3e-08 Score=108.15 Aligned_cols=87 Identities=17% Similarity=0.374 Sum_probs=67.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||..+|... ++.+||+.. +++..+.|.+.+|+-
T Consensus 96 ~~kviiide~~~l~~~-------------~~~~Ll~~le~~~----------~~~~~il~~----~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 96 GRRVVIIEDAERMNEA-------------AANALLKTLEEPP----------PNTLFILIT----PSPEKLLPTIRSRCQ 148 (188)
T ss_pred CeEEEEEechhhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChHhChHHHHhhcE
Confidence 3569999999999875 6789999998632 334455442 356789999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.++|.+++.+++.++|.. +| +++++++.|+..+-
T Consensus 149 -~~~~~~~~~~~~~~~l~~---------------~g----i~~~~~~~i~~~~~ 182 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIR---------------QG----ISEEAAELLLALAG 182 (188)
T ss_pred -EeeCCCCCHHHHHHHHHH---------------cC----CCHHHHHHHHHHcC
Confidence 579999999999888871 14 57899999987664
No 285
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1e-08 Score=118.57 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=58.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||+.+|... ++.+||... ++|+.+.|.+.+|+-
T Consensus 110 ~~kvviI~~a~~~~~~-------------a~NaLLK~LEEPp----------~~~~~Il~t----~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 110 NKKVYIIEHADKMTAS-------------AANSLLKFLEEPS----------GGTTAILLT----ENKHQILPTILSRCQ 162 (329)
T ss_pred CceEEEeehHhhhCHH-------------HHHHHHHHhcCCC----------CCceEEEEe----CChHhCcHHHHhhce
Confidence 3469999999999876 7889999999633 344566543 478899999999988
Q ss_pred eEEEcCCCCHHHHHHHHhh
Q psy2392 1097 IRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~ 1115 (1165)
+ ++|++++.+++.++|++
T Consensus 163 ~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 163 V-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred e-eeCCCCCHHHHHHHHHH
Confidence 7 69999999999988873
No 286
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.92 E-value=9e-09 Score=115.51 Aligned_cols=68 Identities=26% Similarity=0.500 Sum_probs=51.2
Q ss_pred HhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEecccccc
Q psy2392 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTE 256 (1165)
Q Consensus 180 ~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~~ 256 (1165)
...+.++||.+|.++.-..+..- +.| .. ..+.+|+.||||||||.||-.+|++|| .||..+++|++.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mi--k~g----k~---aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMI--KQG----KM---AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHH--HhC----cc---cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 34678999999987644433221 111 00 137999999999999999999999995 8999999999844
No 287
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.92 E-value=5.1e-09 Score=128.79 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=80.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeecc--CceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK--TDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~--t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++||||||.+... +|..|+.+++...+. +.|.-. .-++-+|++..-.. .....|.++|
T Consensus 290 ~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~-~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L 355 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFE-RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADL 355 (534)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEE-ECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHH
Confidence 5799999999999876 999999999865432 222211 12456777754321 2234588899
Q ss_pred hccCC-eEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..||. +.+.++||. .+|+..++. ..+.++..- .|..+.|+++|++.|.......
T Consensus 356 ~~rl~~~~i~lPpLreR~eDi~~L~~----~~l~~~~~~---~~~~~~~s~~a~~~L~~~~WPG 412 (534)
T TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAE----AFLEKFNRE---NGRPLTITPSAIRVLMSCKWPG 412 (534)
T ss_pred HHHhcCCeeeCCCcccccccHHHHHH----HHHHHHHHH---cCCCCCCCHHHHHHHHhCCCCC
Confidence 99985 467899998 688888877 556655443 3444689999999998766555
No 288
>KOG1942|consensus
Probab=98.92 E-value=6.6e-08 Score=105.80 Aligned_cols=64 Identities=22% Similarity=0.469 Sum_probs=48.9
Q ss_pred hcccEecchhhHHH---HHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccccc
Q psy2392 181 LDKYVIGQNRAKRA---VAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFT 255 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~---l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~ 255 (1165)
....++||+.|.++ +...++.. +. ..+.+||.||||+|||.||-++++++| .||..+-.|+..
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~K--km----------aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvy 103 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSK--KM----------AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVY 103 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhh--hc----------cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhh
Confidence 34589999998764 34444432 11 137899999999999999999999994 899988888864
Q ss_pred c
Q psy2392 256 E 256 (1165)
Q Consensus 256 ~ 256 (1165)
+
T Consensus 104 S 104 (456)
T KOG1942|consen 104 S 104 (456)
T ss_pred h
Confidence 4
No 289
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=6.1e-10 Score=112.20 Aligned_cols=37 Identities=43% Similarity=0.743 Sum_probs=32.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
++||+||||||||++++.+|+.++.+++.+.++..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 5899999999999999999999999999999987543
No 290
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.91 E-value=1.4e-08 Score=115.78 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=58.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhccccc-Cceeeee-ceeecCc--eEEEEEeCCccc-CCC-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE-GTTVNTK-YGIIKTD--HILFIASGAFHL-AKP------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~E-g~~v~~~-~~~~~t~--~ilfI~~gaf~~-~~p------- 486 (1165)
.+.++|+||||.+.++ +|..|..++| ++.++.. .+.+-+. +..+|||.+-.. ...
T Consensus 134 ~g~illlDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 134 HNVALCFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred CCeEEEechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 4678999999998665 7778888888 4454431 1222222 455678754211 111
Q ss_pred CCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 487 SDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
..+.++++.||-+.+.+.-++.++-.+||.
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~ 230 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVL 230 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHH
Confidence 137899999999988999999999999984
No 291
>KOG0742|consensus
Probab=98.90 E-value=2.8e-08 Score=112.69 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=82.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
.=++||||.|.+.-.+....-++.-+. ..+.||-- -|.-..+-+|++++ +.|.+|+-+.-.||+.
T Consensus 444 GLllFIDEADAFLceRnktymSEaqRs-aLNAlLfR---------TGdqSrdivLvlAt-----NrpgdlDsAV~DRide 508 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNKTYMSEAQRS-ALNALLFR---------TGDQSRDIVLVLAT-----NRPGDLDSAVNDRIDE 508 (630)
T ss_pred ceEEEehhhHHHHHHhchhhhcHHHHH-HHHHHHHH---------hcccccceEEEecc-----CCccchhHHHHhhhhh
Confidence 348999999998765443121221111 22233211 12222233444444 7899999999999999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHH---------HHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTK---------QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~---------~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+|+-+++++..++|..-.+..+. ....+++.+.-.|.+.......++..+.. .++.+..|-+-.++
T Consensus 509 ~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk---kTeGfSGREiakLv 585 (630)
T KOG0742|consen 509 VVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK---KTEGFSGREIAKLV 585 (630)
T ss_pred eeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH---hccCCcHHHHHHHH
Confidence 9999999999999999522222110 12344554556677766555555554443 34677788887776
Q ss_pred HHHH
Q psy2392 571 EKLL 574 (1165)
Q Consensus 571 e~~l 574 (1165)
-.+-
T Consensus 586 a~vQ 589 (630)
T KOG0742|consen 586 ASVQ 589 (630)
T ss_pred HHHH
Confidence 5543
No 292
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.90 E-value=1e-08 Score=112.26 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC--
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF-- 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~-- 1095 (1165)
..++||||+|.+... .|..|+.+++...-. ....+|.++... .....+.+.|.+||
T Consensus 91 ~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~--------~~~~vl~~~~~~-~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 91 AELYAVDDVERLDDA-------------QQIALFNLFNRVRAH--------GQGALLVAGPAA-PLALPLREDLRTRLGW 148 (227)
T ss_pred CCEEEEeChhhcCch-------------HHHHHHHHHHHHHHc--------CCcEEEEeCCCC-HHhCCCCHHHHHHHhc
Confidence 468999999987543 577788877642211 122233343321 12234779999998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~ 1148 (1165)
...++++||+.++...+|. .....+|+ .++++++++|+..
T Consensus 149 ~~~i~l~pl~~~~~~~~l~-----------~~~~~~~v--~l~~~al~~L~~~ 188 (227)
T PRK08903 149 GLVYELKPLSDADKIAALK-----------AAAAERGL--QLADEVPDYLLTH 188 (227)
T ss_pred CeEEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHh
Confidence 4789999999998877777 23444565 7899999999983
No 293
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=9.8e-09 Score=118.00 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=55.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
+..|++||++|++... .|+.||+.+|... ++.+||... .+|+.+.|.+++||-
T Consensus 93 ~~kv~iI~~ad~m~~~-------------a~naLLK~LEepp----------~~t~~il~~----~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEPP----------KGVFIILLC----ENLEQILDTIKSRCQ 145 (313)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhcCCC----------CCeEEEEEe----CChHhCcHHHHhhce
Confidence 3459999999999766 7889999999643 233444432 478899999999997
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
+ ++|.+++.+++.+.|.
T Consensus 146 ~-~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 146 I-YKLNRLSKEEIEKFIS 162 (313)
T ss_pred e-eeCCCcCHHHHHHHHH
Confidence 4 7999999999988886
No 294
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.90 E-value=1.1e-08 Score=116.84 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc-Ccccee-eeeeccCce--EEEEecCCCCC-CCC-------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE-GTTVNT-KYGIIKTDH--ILFIASGAFHL-AKP------- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E-g~~v~~-k~~~~~t~~--ilfI~~gaf~~-~~p------- 1084 (1165)
.++++++||||..... +|..|.+++| +..++. .-+.+-+-| ..+||+.+=.. ...
T Consensus 134 ~g~illlDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 134 HNVALCFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred CCeEEEechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 4567999999988554 8889999999 334433 122333334 55677754211 111
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1085 SDLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
..+.+.++.||-+++.++-++.++-.+||.
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~ 230 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVL 230 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHH
Confidence 136789999999988999999999999987
No 295
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.90 E-value=1.5e-08 Score=117.15 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=88.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+.+++.+.+....+ .....++-+|+++.... .....|.++|.
T Consensus 100 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 100 DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 5799999999999876 7779999998654332111 11112566777754321 12345889999
Q ss_pred CCC-CeeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCe--eEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 495 GRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 495 ~R~-~~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~--l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
.|| ...|.++||.+ +|+..++ +.++.++.. ..|.. ..|++++++.|..+.. -+..|-|+++
T Consensus 167 ~~l~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~---~~~~~~~~~~s~~al~~L~~y~W-------PGNvrEL~~v 232 (326)
T PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMA----EHFAIQMCR---ELGLPLFPGFTERARETLLNYRW-------PGNIRELKNV 232 (326)
T ss_pred HhcCCCEEECCChhhhhhhHHHHH----HHHHHHHHH---HhCCCCCCCCCHHHHHHHHhCCC-------CcHHHHHHHH
Confidence 999 56889999986 5666666 334444332 33444 4699999999987553 3668999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
+++.+.
T Consensus 233 l~~a~~ 238 (326)
T PRK11608 233 VERSVY 238 (326)
T ss_pred HHHHHH
Confidence 999864
No 296
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=8e-09 Score=118.54 Aligned_cols=95 Identities=16% Similarity=0.294 Sum_probs=67.5
Q ss_pred ccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcc
Q psy2392 979 KKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT 1058 (1165)
Q Consensus 979 ~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~ 1058 (1165)
++...|+|++.+++...-...-. -....||+||++|++... .++.||+++|...
T Consensus 99 ~~~~~I~id~ir~i~~~l~~~p~-------------~~~~kVvII~~ae~m~~~-------------aaNaLLK~LEEPp 152 (314)
T PRK07399 99 KAPPQIRLEQIREIKRFLSRPPL-------------EAPRKVVVIEDAETMNEA-------------AANALLKTLEEPG 152 (314)
T ss_pred cccccCcHHHHHHHHHHHccCcc-------------cCCceEEEEEchhhcCHH-------------HHHHHHHHHhCCC
Confidence 34456777777765433221100 013469999999999776 7889999999743
Q ss_pred ceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1059 VNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1059 v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
. | +||... ++|+.++|.+.+||-+ +.|++++.+++.++|..
T Consensus 153 -~-------~---~fILi~----~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 153 -N-------G---TLILIA----PSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKR 193 (314)
T ss_pred -C-------C---eEEEEE----CChHhCcHHHHhhceE-EecCCCCHHHHHHHHHH
Confidence 2 2 344332 3788999999999875 69999999999999983
No 297
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=7.7e-09 Score=119.65 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=57.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|+++.. .|+.||+.+|. ..++++||..+ ++|+.+.|.+++|+-
T Consensus 110 ~~kvviI~~a~~~~~~-------------a~NaLLK~LEE----------Pp~~~~~Il~t----~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 110 NKKVYIIEHADKMTAS-------------AANSLLKFLEE----------PSGGTTAILLT----ENKHQILPTILSRCQ 162 (329)
T ss_pred CceEEEeehHhhhCHH-------------HHHHHHHHhcC----------CCCCceEEEEe----CChHhCcHHHHhhce
Confidence 5679999999999866 66799999996 24566677653 478899999999987
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
+ |+|.+++.+++.++|.
T Consensus 163 ~-i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 163 V-VEFRPLPPESLIQRLQ 179 (329)
T ss_pred e-eeCCCCCHHHHHHHHH
Confidence 6 5999999999887773
No 298
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.88 E-value=4.7e-08 Score=119.46 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=87.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceeecC--ceEEEEEeCCcccC--CC-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKT--DHILFIASGAFHLA--KP------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~~t--~~ilfI~~gaf~~~--~p------- 486 (1165)
..|++||||+|++.+. .|..|+..||...++. +.|...+ .+..+||+.+-... ++
T Consensus 300 ~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 300 DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 5799999999999766 6779999999877653 3343222 34566776431111 11
Q ss_pred CCCchhhhCCCCeeE-ecCCCCHHHHHHHHhhhh-------------------HhHHHHHHHHHhhcCCeeEeCHHHHHH
Q psy2392 487 SDLIPELQGRFPIRV-ELDSLSISDFTRIMTSTN-------------------VCLTKQYEALLATEGIKIEFVDDGIQR 546 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v-~~~~L~~~~l~~Il~~~~-------------------~~l~~~~~~ll~~~~i~l~~~~~a~~~ 546 (1165)
..|.|.|++||+.++ .++.++.+.-.+|+.... ...++.|.... .+.+...+++++.+.
T Consensus 367 ~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~a-r~~~~P~ls~~~~~~ 445 (509)
T smart00350 367 IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYA-REKIKPKLSEEAAEK 445 (509)
T ss_pred cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHH-HhcCCCCCCHHHHHH
Confidence 168999999998754 456777777666664310 11223333322 223555689999999
Q ss_pred HHHHHHhccccC--------CccCcchhHHHHHH
Q psy2392 547 LAEIAYCINERT--------ENIGARRLYTAMEK 572 (1165)
Q Consensus 547 la~~a~~~~~~~--------~~~GAR~l~~~ie~ 572 (1165)
|.+.....-... -.+..|.|..++.-
T Consensus 446 i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRl 479 (509)
T smart00350 446 LVKAYVDLRKEDSQSEARSSIPITVRQLESIIRL 479 (509)
T ss_pred HHHHHHHhcccccccccccccCcCHHHHHHHHHH
Confidence 998887643211 12356777666643
No 299
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.88 E-value=2.2e-08 Score=115.78 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=90.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee-eeceee--cCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~-~~~~~~--~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
.+|++|||||+++.+. +|..||..|+.+.++ .+-|.. ....+++|++.+-. -..|.|+|..
T Consensus 131 ~~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~---eg~l~~~Lld 194 (337)
T TIGR02030 131 NRGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE---EGELRPQLLD 194 (337)
T ss_pred cCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc---cCCCCHHHHh
Confidence 5799999999998765 777999998755322 222221 12345566664211 1248999999
Q ss_pred CCCeeEecCCCCH-HHHHHHHhhhhH------hH---H-------HHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSLSI-SDFTRIMTSTNV------CL---T-------KQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L~~-~~l~~Il~~~~~------~l---~-------~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||.+.+.+..+.. ++..+|+..... .. . ..........=-.+.+++++++++++.+....
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~--- 271 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD--- 271 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC---
Confidence 9999999999986 777788764110 00 0 00011111112346789999999999997742
Q ss_pred CccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccc
Q psy2392 559 ENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSR 596 (1165)
Q Consensus 559 ~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~ 596 (1165)
.-|=|....++.-.-.-...+ ++ -.|+.+.|+..
T Consensus 272 -~~s~Ra~i~l~raArA~Aal~--GR-~~V~~dDv~~~ 305 (337)
T TIGR02030 272 -VDGLRGELTLNRAAKALAAFE--GR-TEVTVDDIRRV 305 (337)
T ss_pred -CCCCcHHHHHHHHHHHHHHHc--CC-CCCCHHHHHHH
Confidence 114465554444332222221 11 24566666543
No 300
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.87 E-value=8.2e-09 Score=124.00 Aligned_cols=138 Identities=17% Similarity=0.310 Sum_probs=91.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
+..+++||||+.+.... ..|..|..++.... +....++|++ . ..|. .+.+.|.+
T Consensus 206 ~~dvLiIDDiq~l~~k~-----------~~~e~lf~l~N~~~--------~~~k~iIlts-d---~~P~~l~~l~~rL~S 262 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE-----------KTNEIFFTIFNNFI--------ENDKQLFFSS-D---KSPELLNGFDNRLIT 262 (450)
T ss_pred cCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCcEEEEC-C---CCHHHHhhccHHHHH
Confidence 45699999999885331 24556666554211 1111223332 1 1233 35688999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.|++|+.+++.+||. ..++..|+.+.++++++++|++.+ +..+|.|..++.++
T Consensus 263 R~~~Gl~~~L~~pd~e~r~~iL~-----------~~~~~~gl~~~l~~evl~~Ia~~~--------~gd~R~L~gaL~~l 323 (450)
T PRK14087 263 RFNMGLSIAIQKLDNKTATAIIK-----------KEIKNQNIKQEVTEEAINFISNYY--------SDDVRKIKGSVSRL 323 (450)
T ss_pred HHhCCceeccCCcCHHHHHHHHH-----------HHHHhcCCCCCCCHHHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 984 888999999999999994 223344655689999999999987 57899999999999
Q ss_pred HHHhhcccCCCeeEEcccccccccccC
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
+......... ..||.+.|++.+.+.
T Consensus 324 ~~~a~~~~~~--~~it~~~v~~~l~~~ 348 (450)
T PRK14087 324 NFWSQQNPEE--KIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcccCC--CCCCHHHHHHHHhhc
Confidence 7443322111 237888887777643
No 301
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=5.5e-09 Score=122.15 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=56.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.-||+|||+|.+... .|+.||+.+|... .+.+||.. +.+|+.+.|.+++||..
T Consensus 142 ~kVviIDead~m~~~-------------aanaLLK~LEepp----------~~~~~IL~----t~~~~~llpti~SRc~~ 194 (365)
T PRK07471 142 WRVVIVDTADEMNAN-------------AANALLKVLEEPP----------ARSLFLLV----SHAPARLLPTIRSRCRK 194 (365)
T ss_pred CEEEEEechHhcCHH-------------HHHHHHHHHhcCC----------CCeEEEEE----ECCchhchHHhhccceE
Confidence 459999999999876 7889999999632 33455553 24777899999999975
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+|+.+++.++|.+
T Consensus 195 -i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 195 -LRLRPLAPEDVIDALAA 211 (365)
T ss_pred -EECCCCCHHHHHHHHHH
Confidence 69999999999999984
No 302
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.86 E-value=1.9e-08 Score=123.04 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=88.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee--ecCceEEEEEeCCccc---CCCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~--~~t~~ilfI~~gaf~~---~~p~~l~pel 493 (1165)
.+|.+||||||.+... +|..|+.+++.+.+.. .|. ....++-+|+++.... .....|.+.|
T Consensus 281 ~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~-~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL 346 (509)
T PRK05022 281 DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQR-VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADL 346 (509)
T ss_pred CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEee-CCCCcceecceEEEEecCCCHHHHHHcCCccHHH
Confidence 5889999999999866 7789999997655421 111 1122456777754321 2234588999
Q ss_pred hCCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 494 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
..|+.. .|.++||.+ +|+..++ ..++.++...+.. -.+.|++++++.|..+.. -+..|-|+++|
T Consensus 347 ~~rl~~~~i~lPpLreR~eDI~~L~----~~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~W-------PGNvrEL~~~i 413 (509)
T PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLA----GYFLEQNRARLGL--RSLRLSPAAQAALLAYDW-------PGNVRELEHVI 413 (509)
T ss_pred HhcccccEeeCCCchhchhhHHHHH----HHHHHHHHHHcCC--CCCCCCHHHHHHHHhCCC-------CCcHHHHHHHH
Confidence 999864 488999986 4666655 3444444332211 346899999999987553 46789999999
Q ss_pred HHHHHH
Q psy2392 571 EKLLEE 576 (1165)
Q Consensus 571 e~~l~~ 576 (1165)
++.+..
T Consensus 414 ~ra~~~ 419 (509)
T PRK05022 414 SRAALL 419 (509)
T ss_pred HHHHHh
Confidence 998653
No 303
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.6e-08 Score=115.78 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=47.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
+..||+|||+|+++.. .|+.||+.+|-. ..+..||... +.|+.+.|.+++|+-
T Consensus 109 ~~kviiidead~mt~~-------------A~nallk~lEep----------~~~~~~il~~----n~~~~il~tI~SRc~ 161 (325)
T COG0470 109 GYKVVIIDEADKLTED-------------AANALLKTLEEP----------PKNTRFILIT----NDPSKILPTIRSRCQ 161 (325)
T ss_pred CceEEEeCcHHHHhHH-------------HHHHHHHHhccC----------CCCeEEEEEc----CChhhccchhhhcce
Confidence 5679999999999975 677999999863 4455566653 478999999999987
Q ss_pred eeEecCCC
Q psy2392 499 IRVELDSL 506 (1165)
Q Consensus 499 ~~v~~~~L 506 (1165)
+ +.|+++
T Consensus 162 ~-i~f~~~ 168 (325)
T COG0470 162 R-IRFKPP 168 (325)
T ss_pred e-eecCCc
Confidence 6 589883
No 304
>PRK06620 hypothetical protein; Validated
Probab=98.86 E-value=7.8e-09 Score=112.49 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=58.4
Q ss_pred hhhhCCCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 491 PELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 491 pel~~R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
|.|++|+. ..+++++|+.+++.+++. +.+...| +.++++++++|++.+ ...+|.|.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~-----------k~~~~~~--l~l~~ev~~~L~~~~--------~~d~r~l~~ 188 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIF-----------KHFSISS--VTISRQIIDFLLVNL--------PREYSKIIE 188 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------cCCHHHHHH
Confidence 99999987 357999999999888884 1122234 578999999999988 568999999
Q ss_pred HHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 569 AMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 569 ~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+++++-... .. .. ..||...+++.+
T Consensus 189 ~l~~l~~~~-~~-~~--~~it~~~~~~~l 213 (214)
T PRK06620 189 ILENINYFA-LI-SK--RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHH-HH-cC--CCCCHHHHHHHh
Confidence 999864221 11 11 236666665543
No 305
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.86 E-value=2e-08 Score=122.92 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=79.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccC--ceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t--~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+ ++.|.-.+ -++-+||+..... .....|.+.|
T Consensus 281 ~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~-~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL 346 (509)
T PRK05022 281 DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEI-QRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADL 346 (509)
T ss_pred CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCE-eeCCCCcceecceEEEEecCCCHHHHHHcCCccHHH
Confidence 6899999999999876 99999999986554 22232222 2567777765332 2335688999
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. +.|+++||-+ +|+..+.. ..+.++..-+.. -.+.|+++|++.|..+..-.
T Consensus 347 ~~rl~~~~i~lPpLreR~eDI~~L~~----~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~WPG 404 (509)
T PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLAG----YFLEQNRARLGL--RSLRLSPAAQAALLAYDWPG 404 (509)
T ss_pred HhcccccEeeCCCchhchhhHHHHHH----HHHHHHHHHcCC--CCCCCCHHHHHHHHhCCCCC
Confidence 99986 4488999976 57766665 555555443322 23589999999998766555
No 306
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.85 E-value=1.1e-08 Score=128.43 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=88.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+|||||+.+... +|..||.+++.+.+..-.+ ....-++-+|+++.... .....|.+.|.
T Consensus 416 ~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~ 482 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482 (638)
T ss_pred CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHh
Confidence 5899999999999876 7779999998765532111 01112455777754321 12346888888
Q ss_pred CCCC-eeEecCCCCHH--HHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 495 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~~--~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.||. ..|.++||-+- |+..++ ..++.++.. ..+..+.|++++++.|..+.. .+..|-|+++++
T Consensus 483 ~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~---~~~~~~~~s~~a~~~L~~y~W-------PGNvreL~~~l~ 548 (638)
T PRK11388 483 YALHAFEITIPPLRMRREDIPALV----NNKLRSLEK---RFSTRLKIDDDALARLVSYRW-------PGNDFELRSVIE 548 (638)
T ss_pred hhhceeEEeCCChhhhhhHHHHHH----HHHHHHHHH---HhCCCCCcCHHHHHHHHcCCC-------CChHHHHHHHHH
Confidence 8875 56788999874 677766 344444433 234456899999999987553 366899999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+++.
T Consensus 549 ~~~~ 552 (638)
T PRK11388 549 NLAL 552 (638)
T ss_pred HHHH
Confidence 9764
No 307
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.85 E-value=2e-09 Score=115.02 Aligned_cols=44 Identities=48% Similarity=0.758 Sum_probs=37.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++|+||+.+|+++..+.... +|+||+||||||||++|+++...|
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----------------h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----------------HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------------------EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC----------------CCeEEECCCCCCHHHHHHHHHHhC
Confidence 37999999999999988653 799999999999999999999988
No 308
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.85 E-value=3.8e-08 Score=116.18 Aligned_cols=61 Identities=31% Similarity=0.441 Sum_probs=45.1
Q ss_pred HHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccccc
Q psy2392 178 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFT 255 (1165)
Q Consensus 178 ~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~ 255 (1165)
...++ ++++-++.++.+..++... ++++|+||||||||++|+.+|..+. ..+.++++..++
T Consensus 171 ~~~l~-d~~i~e~~le~l~~~L~~~----------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH 233 (459)
T PRK11331 171 EDALN-DLFIPETTIETILKRLTIK----------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH 233 (459)
T ss_pred HHHhh-cccCCHHHHHHHHHHHhcC----------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence 33455 5677777777777766532 7999999999999999999999984 345566665554
No 309
>KOG1942|consensus
Probab=98.84 E-value=1e-07 Score=104.29 Aligned_cols=103 Identities=19% Similarity=0.349 Sum_probs=65.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+|++||||++-+--.+.. .|-..+|.....+ ...-|+.=.-.--|.--...|..+-|.|+.|+-|
T Consensus 297 PGVLFIDEVhMLDiEcFT-------------yL~kalES~iaPi--vifAsNrG~~~irGt~d~~sPhGip~dllDRl~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFT-------------YLHKALESPIAPI--VIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI 361 (456)
T ss_pred CcceEeeehhhhhhHHHH-------------HHHHHhcCCCCce--EEEecCCcceeecCCcCCCCCCCCCHHHhhheeE
Confidence 699999999987554322 3444455322111 0000000000011333345688899999999887
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.-.++++++..+|++ ...+.||+ .++++|+..++.+.
T Consensus 362 -irt~~y~~~e~r~Ii~-----------~Ra~~E~l--~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 362 -IRTLPYDEEEIRQIIK-----------IRAQVEGL--QVEEEALDLLAEIG 399 (456)
T ss_pred -EeeccCCHHHHHHHHH-----------HHHhhhcc--eecHHHHHHHHhhc
Confidence 4788999999999998 33456676 78899999998843
No 310
>PRK08727 hypothetical protein; Validated
Probab=98.83 E-value=2.6e-08 Score=109.77 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=65.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~g 1093 (1165)
+.-+++|||||.+..... -|..|+.++.... .....+|+++. ..|++ +.|.|++
T Consensus 93 ~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~---------~~~~~vI~ts~---~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-----------DEVALFDFHNRAR---------AAGITLLYTAR---QMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHH---------HcCCeEEEECC---CChhhhhhhhHHHHH
Confidence 345899999999875422 3455665554211 11122334433 24544 4799999
Q ss_pred cC--CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1094 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1094 R~--~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|| ...++|++++.+++.+||. .....+|+ .++++++.+|++.+.
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~-----------~~a~~~~l--~l~~e~~~~La~~~~ 195 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLR-----------ERAQRRGL--ALDEAAIDWLLTHGE 195 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhCC
Confidence 95 5678999999999999999 22222454 789999999998765
No 311
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.82 E-value=4e-08 Score=113.24 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=50.4
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCC-------CceEEec
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA-------PFIKIEA 251 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~-------~~i~ld~ 251 (1165)
+++++|+++++..+...+... ..|+.. ...-++|+||||||||++|++||+.++. +++.+.+
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~--a~g~~~------~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSA--AQGLEE------RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred chhccCcHHHHHHHHHHHHHH--HhcCCC------CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 448999999999999888764 222222 1367899999999999999999999965 9999988
No 312
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.82 E-value=2.3e-08 Score=122.00 Aligned_cols=127 Identities=23% Similarity=0.250 Sum_probs=85.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece--eecCceEEEEEeCCccc---CCCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~--~~~t~~ilfI~~gaf~~---~~p~~l~pel 493 (1165)
.+|.+|||||+.+... +|..||.+++.+.+.. .| ....-++-+|++.+... .....|.+.|
T Consensus 307 ~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r-~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVR-VGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDL 372 (526)
T ss_pred CCceEEecChHhCCHH-------------HHHHHHHHHhcCcEEe-cCCCceeeecceEEeccCCCHHHHhhhcchhHHH
Confidence 5899999999999876 7789999998665432 11 11122445677654332 2234588899
Q ss_pred hCCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHH-------HHHHHHhccccCCccCc
Q psy2392 494 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR-------LAEIAYCINERTENIGA 563 (1165)
Q Consensus 494 ~~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~-------la~~a~~~~~~~~~~GA 563 (1165)
..|+. ..|.++||.+ +|+..++ ..++.++... .+ +.+++++++. |.. |++ .+..
T Consensus 373 ~~rL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~~---~~--~~~~~~a~~~~~~~~~~L~~--y~W-----PGNv 436 (526)
T TIGR02329 373 FYRLSILRIALPPLRERPGDILPLA----AEYLVQAAAA---LR--LPDSEAAAQVLAGVADPLQR--YPW-----PGNV 436 (526)
T ss_pred HHhcCCcEEeCCCchhchhHHHHHH----HHHHHHHHHH---cC--CCCCHHHHHHhHHHHHHHHh--CCC-----CchH
Confidence 99985 7889999987 5777766 3444444322 23 3589999887 543 332 4678
Q ss_pred chhHHHHHHHHH
Q psy2392 564 RRLYTAMEKLLE 575 (1165)
Q Consensus 564 R~l~~~ie~~l~ 575 (1165)
|-|++++++++-
T Consensus 437 rEL~nvier~~i 448 (526)
T TIGR02329 437 RELRNLVERLAL 448 (526)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 313
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.81 E-value=4.1e-08 Score=119.71 Aligned_cols=130 Identities=25% Similarity=0.277 Sum_probs=82.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+|||||+.+... +|..||.+++.+.+..-.+ ....-++-+|++++... .....|.+.|.
T Consensus 322 ~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 322 HGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLF 388 (538)
T ss_pred CCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHH
Confidence 5899999999999876 7779999998765532111 11123455777754321 12234788888
Q ss_pred CCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHH-----HHhccccCCccCcchh
Q psy2392 495 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI-----AYCINERTENIGARRL 566 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~-----a~~~~~~~~~~GAR~l 566 (1165)
.|+. ..|.++||.+ +|+..++ ..++.++.. ..+. .++++++..+.+. .|++ .+..|-|
T Consensus 389 yrL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~---~~~~--~~~~~a~~~~~~a~~~L~~y~W-----PGNvREL 454 (538)
T PRK15424 389 YRLSILRLQLPPLRERVADILPLA----ESFLKQSLA---ALSA--PFSAALRQGLQQCETLLLHYDW-----PGNVREL 454 (538)
T ss_pred HHhcCCeecCCChhhchhHHHHHH----HHHHHHHHH---HcCC--CCCHHHHHhhHHHHHHHHhCCC-----CchHHHH
Confidence 8875 6778899976 5666666 344444322 1233 4778777433221 2333 4678999
Q ss_pred HHHHHHHHH
Q psy2392 567 YTAMEKLLE 575 (1165)
Q Consensus 567 ~~~ie~~l~ 575 (1165)
++++++++-
T Consensus 455 ~nvier~~i 463 (538)
T PRK15424 455 RNLMERLAL 463 (538)
T ss_pred HHHHHHHHH
Confidence 999999864
No 314
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.81 E-value=4.8e-08 Score=106.72 Aligned_cols=116 Identities=24% Similarity=0.359 Sum_probs=74.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+++||.||.+... ...|..|..+++.-. .....+++++. ..-..-..+.|.|.+||.
T Consensus 97 ~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~--------~~~k~li~ts~-~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLI--------ESGKQLILTSD-RPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHH--------HTTSEEEEEES-S-TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHH--------hhCCeEEEEeC-CCCccccccChhhhhhHh
Confidence 4679999999999754 236778887776421 22233444442 221222236789999975
Q ss_pred --eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 --~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
..+++++|+.++..+||. +.+...|+ .++++++++|++.. ....|.|..+|.++..
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~-----------~~a~~~~~--~l~~~v~~~l~~~~--------~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQ-----------KKAKERGI--ELPEEVIEYLARRF--------RRDVRELEGALNRLDA 214 (219)
T ss_dssp CSEEEEE----HHHHHHHHH-----------HHHHHTT----S-HHHHHHHHHHT--------TSSHHHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCcHHHHHHHHHhh--------cCCHHHHHHHHHHHHH
Confidence 588999999999999994 33445565 58999999999977 3467888888888754
No 315
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.81 E-value=2.1e-08 Score=99.25 Aligned_cols=55 Identities=42% Similarity=0.688 Sum_probs=43.1
Q ss_pred ecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 186 iGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
+|++.++..+...+... ...+++++||||||||++++.+++.+ +.+++.+++.++
T Consensus 1 ~~~~~~~~~i~~~~~~~--------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC--------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 36677777776666431 13689999999999999999999998 778888887664
No 316
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.81 E-value=1.1e-08 Score=123.15 Aligned_cols=98 Identities=16% Similarity=0.344 Sum_probs=66.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~g 1093 (1165)
+..+++|||||.+.+.. +.|.+|+.++..-.- ....++|++- ..|.+ +.|.|.+
T Consensus 211 ~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~~--------~~~~iiits~----~~p~~l~~l~~~l~S 267 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALHE--------AGKQIVLTSD----RPPKELPGLEERLRS 267 (450)
T ss_pred cCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHH--------CCCcEEEECC----CCHHHHHHHHHHHHh
Confidence 34599999999996541 357777776653111 1112333332 13433 6689999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
||. ..++|++++.+++.+||+ ..+...|+ .++++++++||+.+.
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~-----------~~~~~~~~--~l~~e~l~~ia~~~~ 313 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILK-----------KKAEEEGI--DLPDEVLEFIAKNIT 313 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHcCcC
Confidence 995 678999999999999999 22333454 789999999987543
No 317
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.1e-08 Score=114.89 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=49.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
+.-||+|||+|++... .|+.||+.+|-...+| .||+.. +.|+.++|.+++||-
T Consensus 109 ~~kviiidead~mt~~-------------A~nallk~lEep~~~~----------~~il~~----n~~~~il~tI~SRc~ 161 (325)
T COG0470 109 GYKVVIIDEADKLTED-------------AANALLKTLEEPPKNT----------RFILIT----NDPSKILPTIRSRCQ 161 (325)
T ss_pred CceEEEeCcHHHHhHH-------------HHHHHHHHhccCCCCe----------EEEEEc----CChhhccchhhhcce
Confidence 3459999999999985 8889999999755444 444443 479999999999988
Q ss_pred eEEEcCCCCHHH
Q psy2392 1097 IRVELDSLSISD 1108 (1165)
Q Consensus 1097 i~v~l~~l~~~~ 1108 (1165)
+ +.|++.+...
T Consensus 162 ~-i~f~~~~~~~ 172 (325)
T COG0470 162 R-IRFKPPSRLE 172 (325)
T ss_pred e-eecCCchHHH
Confidence 7 5899844433
No 318
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.80 E-value=3e-08 Score=120.13 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=58.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeee--ccCceEEEEecCC------CCC------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGI--IKTDHILFIASGA------FHL------ 1081 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~--~~t~~ilfI~~ga------f~~------ 1081 (1165)
++|++|||||+++... +|..|+..||...+. .+.|. ....++.+|++.+ |..
T Consensus 295 ~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~ 361 (499)
T TIGR00368 295 HNGVLFLDELPEFKRS-------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCR 361 (499)
T ss_pred CCCeEecCChhhCCHH-------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCccccc
Confidence 6899999999998765 999999999987654 23331 1234667777654 211
Q ss_pred CCC-------CCCchhhhccCCeEEEcCCCCHHHHHH
Q psy2392 1082 AKP-------SDLIPELQGRFPIRVELDSLSISDFTR 1111 (1165)
Q Consensus 1082 ~~p-------~dl~pel~gR~~i~v~l~~l~~~~l~~ 1111 (1165)
+.| ..+.++|+.||.+++++++++.++|.+
T Consensus 362 c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 362 CSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred CCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhc
Confidence 011 147799999999999999998887743
No 319
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.8e-09 Score=123.43 Aligned_cols=44 Identities=50% Similarity=0.720 Sum_probs=40.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+|+||++||+++..+.... +|+||+||||||||++|+.+...|
T Consensus 179 ~DV~GQ~~AKrAleiAAAGg----------------HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGG----------------HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcC----------------CcEEEecCCCCchHHhhhhhcccC
Confidence 48999999999999887653 899999999999999999999888
No 320
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.79 E-value=4e-09 Score=104.43 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
|+||+|+||+|||++|+++|+.++..|.+++++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tp 34 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTP 34 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--T
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecC
Confidence 6899999999999999999999999999998863
No 321
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.78 E-value=4.8e-08 Score=112.95 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=78.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++.+.+. +.|. ....++-+||+..-.. .....|.++|
T Consensus 100 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~-~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL 165 (326)
T PRK11608 100 DGGTLFLDELATAPML-------------VQEKLLRVIEYGELE-RVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADL 165 (326)
T ss_pred CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEE-eCCCCceeeccEEEEEeCchhHHHHHHcCCchHHH
Confidence 6799999999999876 899999999865432 1221 1112466788765322 1234678999
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCc--eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~--l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| ...|.++||-+ +|+..++. ..+.++.. ..|.. ..|+++|++.|.....-.
T Consensus 166 ~~~l~~~~i~lPpLReR~eDI~~L~~----~fl~~~~~---~~~~~~~~~~s~~al~~L~~y~WPG 224 (326)
T PRK11608 166 LDRLAFDVVQLPPLRERQSDIMLMAE----HFAIQMCR---ELGLPLFPGFTERARETLLNYRWPG 224 (326)
T ss_pred HHhcCCCEEECCChhhhhhhHHHHHH----HHHHHHHH---HhCCCCCCCCCHHHHHHHHhCCCCc
Confidence 9999 56889999975 57776666 44554433 33443 468999999887665544
No 322
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.78 E-value=4.6e-08 Score=119.86 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=88.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
..|.|||||||.+... +|..|+.+++.+.+..-. .....-++-+|+++.... .....|.+.|.
T Consensus 298 ~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 298 NGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 5789999999999876 777899998765432210 011123566788764321 12234888999
Q ss_pred CCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCC-eeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i-~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..|.++||.+ +|+..++ ..++.++.. ..|. ...+++++++.|..+.. .+..|-|++++
T Consensus 365 ~rL~~~~i~lPpLreR~~Di~~L~----~~fl~~~~~---~~g~~~~~ls~~a~~~L~~y~W-------PGNvreL~nvl 430 (520)
T PRK10820 365 YRLNVLTLNLPPLRDRPQDIMPLT----ELFVARFAD---EQGVPRPKLAADLNTVLTRYGW-------PGNVRQLKNAI 430 (520)
T ss_pred hhcCeeEEeCCCcccChhHHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHhcCCC-------CCHHHHHHHHH
Confidence 9975 6788999987 4666555 344444433 3343 34799999999976543 46789999999
Q ss_pred HHHHHH
Q psy2392 571 EKLLEE 576 (1165)
Q Consensus 571 e~~l~~ 576 (1165)
++++..
T Consensus 431 ~~a~~~ 436 (520)
T PRK10820 431 YRALTQ 436 (520)
T ss_pred HHHHHh
Confidence 998753
No 323
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.78 E-value=3.5e-08 Score=120.39 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=73.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..||.+++...+. +.|.- ..-++-+|++..-.. .....|.++|
T Consensus 307 ~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~-r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVV-RVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDL 372 (526)
T ss_pred CCceEEecChHhCCHH-------------HHHHHHHHHhcCcEE-ecCCCceeeecceEEeccCCCHHHHhhhcchhHHH
Confidence 6899999999999877 999999999876543 23321 122456777765332 2234578889
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHH
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 1144 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ 1144 (1165)
-.||. +.++++||-+ +|+..+.. ..+.++... .++ .|+++|++.
T Consensus 373 ~~rL~~~~I~lPPLReR~eDI~~L~~----~fl~~~~~~---~~~--~~~~~a~~~ 419 (526)
T TIGR02329 373 FYRLSILRIALPPLRERPGDILPLAA----EYLVQAAAA---LRL--PDSEAAAQV 419 (526)
T ss_pred HHhcCCcEEeCCCchhchhHHHHHHH----HHHHHHHHH---cCC--CCCHHHHHH
Confidence 89985 7889999976 67877766 555555432 233 689999887
No 324
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.77 E-value=5.1e-08 Score=96.50 Aligned_cols=54 Identities=43% Similarity=0.682 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 785 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 785 GQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
|++.++..+...+... ...+++++||||||||++++.+++.+ +.+++.++++++
T Consensus 2 ~~~~~~~~i~~~~~~~--------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 2 GQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred chHHHHHHHHHHHhCC--------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 5666666766665421 13689999999999999999999998 778888887664
No 325
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=1.4e-08 Score=121.90 Aligned_cols=134 Identities=22% Similarity=0.280 Sum_probs=87.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
+..+++|||++.+... .+.|..|+.++..-. .....++|++. ..|.. +.+.+.+
T Consensus 194 ~~dvLlIDDi~~l~~~-----------~~~q~elf~~~n~l~--------~~~k~iIitsd----~~p~~l~~l~~rL~S 250 (440)
T PRK14088 194 KVDVLLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVS 250 (440)
T ss_pred cCCEEEEechhhhcCc-----------HHHHHHHHHHHHHHH--------HcCCeEEEECC----CCHHHHHHHHHHHhh
Confidence 3569999999988543 124556665553211 11122333331 23443 6688899
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..|.|++++.+.+..||+ +.++.++ +.++++++++|++.. ...+|.|..++.++
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~-----------~~~~~~~--~~l~~ev~~~Ia~~~--------~~~~R~L~g~l~~l 309 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIAR-----------KMLEIEH--GELPEEVLNFVAENV--------DDNLRRLRGAIIKL 309 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHhcc--------ccCHHHHHHHHHHH
Confidence 984 678999999999999994 1223334 467999999999877 45789999999988
Q ss_pred HHHhhcccCCCeeEEcccccccccccC
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
.......- -.||.+.+++.+.++
T Consensus 310 ~~~~~~~~----~~it~~~a~~~L~~~ 332 (440)
T PRK14088 310 LVYKETTG----EEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHhC----CCCCHHHHHHHHHHH
Confidence 65433221 237777777777654
No 326
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.77 E-value=6.5e-08 Score=122.51 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=87.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++|||||+.+... +|..|+..++.+.+..-. ......++-+|++++... .....|.++|.
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~ 536 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 536 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHH
Confidence 5799999999999766 777999998765432111 111234566788765432 12345888888
Q ss_pred CCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCee-EeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l-~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+.. .|.++||.+ +|+..++ ..++.++.. ..|..+ .|++++++.|..+.. .+..|-|++++
T Consensus 537 ~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~---~~~~~~~~~s~~al~~L~~y~W-------PGNvrEL~~~i 602 (686)
T PRK15429 537 YRLNVFPIHLPPLRERPEDIPLLV----KAFTFKIAR---RMGRNIDSIPAETLRTLSNMEW-------PGNVRELENVI 602 (686)
T ss_pred hccCeeEEeCCChhhhHhHHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHHhCCC-------CCcHHHHHHHH
Confidence 88764 578899876 5565555 334444332 335555 599999999976543 46789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 603 ~~a~~ 607 (686)
T PRK15429 603 ERAVL 607 (686)
T ss_pred HHHHH
Confidence 99874
No 327
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.76 E-value=2.2e-08 Score=104.36 Aligned_cols=61 Identities=30% Similarity=0.554 Sum_probs=44.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .|+.||..||. ...++.||... ++++.+.|.++||+-
T Consensus 102 ~~KviiI~~ad~l~~~-------------a~NaLLK~LEe----------pp~~~~fiL~t----~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEE-------------AQNALLKTLEE----------PPENTYFILIT----NNPSKILPTIRSRCQ 154 (162)
T ss_dssp SSEEEEEETGGGS-HH-------------HHHHHHHHHHS----------TTTTEEEEEEE----S-GGGS-HHHHTTSE
T ss_pred CceEEEeehHhhhhHH-------------HHHHHHHHhcC----------CCCCEEEEEEE----CChHHChHHHHhhce
Confidence 5779999999999977 77899999996 34566677663 678899999999986
Q ss_pred eeEecCCCC
Q psy2392 499 IRVELDSLS 507 (1165)
Q Consensus 499 ~~v~~~~L~ 507 (1165)
. +.|++|+
T Consensus 155 ~-i~~~~ls 162 (162)
T PF13177_consen 155 V-IRFRPLS 162 (162)
T ss_dssp E-EEE----
T ss_pred E-EecCCCC
Confidence 5 5888775
No 328
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.75 E-value=9.2e-08 Score=116.92 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=80.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeeccC--ceEEEEecCC-----CCCCCC----
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKT--DHILFIASGA-----FHLAKP---- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~t--~~ilfI~~ga-----f~~~~p---- 1084 (1165)
+.|++||||||++... .|..|+..||...++ .|.|...+ .+..+||+.. |..+++
T Consensus 300 ~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 300 DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 6799999999999876 889999999987765 34443322 2355666643 111111
Q ss_pred CCCchhhhccCCeEE-EcCCCCHHHHHHHHhhh-------------------HHHhHHHHHHHHhhcCCceEeCHHHHHH
Q psy2392 1085 SDLIPELQGRFPIRV-ELDSLSISDFTRIMTST-------------------NVCLTKQYEALLATEGIKIEFVDDGIQR 1144 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v-~l~~l~~~~l~~il~~~-------------------~~~l~~q~~~l~~~egv~l~~~~~ai~~ 1144 (1165)
..|-|.|++||.+.+ -++..+.+.-.+|++.. ....++.|....+. .+...+++++.+.
T Consensus 367 ~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~-~~~P~ls~~~~~~ 445 (509)
T smart00350 367 IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE-KIKPKLSEEAAEK 445 (509)
T ss_pred cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHh-cCCCCCCHHHHHH
Confidence 268899999997654 45677777666666521 12234555544443 3555689999999
Q ss_pred HHHHHhcc
Q psy2392 1145 LAEIAYCI 1152 (1165)
Q Consensus 1145 ia~~a~~~ 1152 (1165)
|.....+.
T Consensus 446 i~~~y~~~ 453 (509)
T smart00350 446 LVKAYVDL 453 (509)
T ss_pred HHHHHHHh
Confidence 98877664
No 329
>KOG0990|consensus
Probab=98.75 E-value=2.7e-09 Score=118.55 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=72.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+..|++||.|..+.. .|++|...+|..+++|+|- ..++.|..++|.+|+||.
T Consensus 131 ~fKlvILDEADaMT~~-------------AQnALRRviek~t~n~rF~--------------ii~n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-------------AQNALRRVIEKYTANTRFA--------------TISNPPQKIHPAQQSRCT 183 (360)
T ss_pred ceeEEEecchhHhhHH-------------HHHHHHHHHHHhccceEEE--------------EeccChhhcCchhhcccc
Confidence 4568999999999988 8999999999877777652 223567889999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
- +.|.||+..+...++. ..++.+-. ..+++++..++..+-.
T Consensus 184 r-frf~pl~~~~~~~r~s-----------hi~e~e~~--~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 184 R-FRFAPLTMAQQTERQS-----------HIRESEQK--ETNPEGYSALGRLSVG 224 (360)
T ss_pred c-CCCCCCChhhhhhHHH-----------HHHhcchh--hcCHHHHHHHHHHhHH
Confidence 4 6999999998887777 44444444 5677887777766543
No 330
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=3.2e-08 Score=117.80 Aligned_cols=97 Identities=16% Similarity=0.333 Sum_probs=65.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhcc
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQGR 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~gR 1094 (1165)
..+++|||||.+... ++.|..|+.+++.-.-. ...++| ++. ..|+ .+.|.|.+|
T Consensus 200 ~dlLiiDDi~~l~~~-----------~~~~~~l~~~~n~~~~~--------~~~iii-ts~---~~p~~l~~l~~~l~SR 256 (405)
T TIGR00362 200 VDLLLIDDIQFLAGK-----------ERTQEEFFHTFNALHEN--------GKQIVL-TSD---RPPKELPGLEERLRSR 256 (405)
T ss_pred CCEEEEehhhhhcCC-----------HHHHHHHHHHHHHHHHC--------CCCEEE-ecC---CCHHHHhhhhhhhhhh
Confidence 459999999998653 23677788777631111 111222 322 1233 356889999
Q ss_pred CC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1095 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1095 ~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|. ..|+|++++.++...||+ ..++..++ .++++++.+||+...
T Consensus 257 l~~g~~v~i~~pd~~~r~~il~-----------~~~~~~~~--~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 257 FEWGLVVDIEPPDLETRLAILQ-----------KKAEEEGL--ELPDEVLEFIAKNIR 301 (405)
T ss_pred ccCCeEEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhcC
Confidence 95 678999999999999999 23333454 778999999987543
No 331
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.75 E-value=5.6e-08 Score=119.08 Aligned_cols=115 Identities=18% Similarity=0.294 Sum_probs=78.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+.. .|. ...-++-+||++.-.. .....|.+.|
T Consensus 298 ~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~-~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL 363 (520)
T PRK10820 298 NGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRR-VGEDHEVHVDVRVICATQKNLVELVQKGEFREDL 363 (520)
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCccc-CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence 5799999999999876 8999999998654321 221 1234567888875332 1223477889
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCC-ceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv-~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. ..++++||.+ +|+..++. ..+.++.. ..|. ...|+++|++.|..+....
T Consensus 364 ~~rL~~~~i~lPpLreR~~Di~~L~~----~fl~~~~~---~~g~~~~~ls~~a~~~L~~y~WPG 421 (520)
T PRK10820 364 YYRLNVLTLNLPPLRDRPQDIMPLTE----LFVARFAD---EQGVPRPKLAADLNTVLTRYGWPG 421 (520)
T ss_pred HhhcCeeEEeCCCcccChhHHHHHHH----HHHHHHHH---HcCCCCCCcCHHHHHHHhcCCCCC
Confidence 99964 6789999976 46666555 55555543 3343 3479999999997665544
No 332
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.74 E-value=2.6e-08 Score=121.63 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=87.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC-
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~- 497 (1165)
+..+|+||+|+.+..+. ..|..|+.+++... ....-++|++ ...-..-..+.+.|.+||
T Consensus 377 ~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~--------e~gk~IIITS-d~~P~eL~~l~~rL~SRf~ 436 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLH--------NANKQIVLSS-DRPPKQLVTLEDRLRNRFE 436 (617)
T ss_pred cCCEEEEehhccccCCH-----------HHHHHHHHHHHHHH--------hcCCCEEEec-CCChHhhhhccHHHHhhhh
Confidence 45799999999986442 24556666665321 1111223333 211111124678899998
Q ss_pred -CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 -~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.+.|.+++++.+.+..||. ..++..| +.++++++++|+.... ...|.|..+|.++..-
T Consensus 437 ~GLvv~I~~PD~EtR~aIL~-----------kka~~r~--l~l~~eVi~yLa~r~~--------rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 437 WGLITDVQPPELETRIAILR-----------KKAVQEQ--LNAPPEVLEFIASRIS--------RNIRELEGALIRVTAF 495 (617)
T ss_pred cCceEEcCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHhcc--------CCHHHHHHHHHHHHHH
Confidence 6888999999999999994 1233344 5788999999999763 4578888888888654
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.+..- -.||.+.+++.+.+
T Consensus 496 a~~~~----~~itl~la~~vL~~ 514 (617)
T PRK14086 496 ASLNR----QPVDLGLTEIVLRD 514 (617)
T ss_pred HHhhC----CCCCHHHHHHHHHH
Confidence 33221 23666666666653
No 333
>PHA02244 ATPase-like protein
Probab=98.74 E-value=1.9e-07 Score=107.80 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=71.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCCC-------CCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHLA-------KPSDL 1087 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~~-------~p~dl 1087 (1165)
+.|++||||||.+... +|..|++++|...+.. .|.. .-.+.-+|++++-... -...+
T Consensus 180 ~GgvLiLDEId~a~p~-------------vq~~L~~lLd~r~l~l-~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L 245 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-------------ALIIINSAIANKFFDF-ADERVTAHEDFRVISAGNTLGKGADHIYVARNKI 245 (383)
T ss_pred cCCEEEEeCcCcCCHH-------------HHHHHHHHhccCeEEe-cCcEEecCCCEEEEEeeCCCccCcccccCCCccc
Confidence 6789999999998766 8888999998654332 2222 1245677777653211 12468
Q ss_pred chhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhH---HHHHHHHhhcCCceEeCHHHHHHHHH
Q psy2392 1088 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLT---KQYEALLATEGIKIEFVDDGIQRLAE 1147 (1165)
Q Consensus 1088 ~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~---~q~~~l~~~egv~l~~~~~ai~~ia~ 1147 (1165)
.++++.||.. |+|+-+++-+. .|+... ..+. ...+..++.+|+...|+--++-..|+
T Consensus 246 ~~AllDRFv~-I~~dyp~~~E~-~i~~~~-~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 246 DGATLDRFAP-IEFDYDEKIEH-LISNGD-EDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred CHHHHhhcEE-eeCCCCcHHHH-HHhhhH-HHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 8999999964 79999885444 344322 1222 22233355588887887765544444
No 334
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.72 E-value=7.3e-08 Score=119.45 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=72.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-------eecC----ceEEEEEeCCcccCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------IIKT----DHILFIASGAFHLAKPS 487 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-------~~~t----~~ilfI~~gaf~~~~p~ 487 (1165)
+.|++||||++.+.+. +|..|+..++.+.+..... .+.+ -++-+|++|.. .-..
T Consensus 226 nGGtL~LDei~~L~~~-------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~--~ll~ 290 (637)
T PRK13765 226 HKGVLFIDEINTLDLE-------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL--DALE 290 (637)
T ss_pred CCcEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc--CHHH
Confidence 7899999999999544 6778988886554432110 1111 14557888753 1224
Q ss_pred CCchhhhCCCC---eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 488 DLIPELQGRFP---IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 488 ~l~pel~~R~~---~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
.+.|+|..||. +.+.|+.-.++....+ ..+.....+.+..+|-...|+++|+.+|++.+..
T Consensus 291 ~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~-----~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 291 NMHPALRSRIKGYGYEVYMRDTMEDTPENR-----RKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred hhhHHHHHHhccCeEEEEcccccCCCHHHH-----HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999997 7788875443322221 1222333334444444558999999999999876
No 335
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.72 E-value=5.9e-09 Score=111.54 Aligned_cols=45 Identities=47% Similarity=0.730 Sum_probs=37.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.+|+||+.+|+.+..+... ..|+||+||||||||++|++++..+.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 5899999999999988863 37999999999999999999999884
No 336
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=6e-08 Score=111.98 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=69.2
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.+++.+.+.+.......-.. ..+.|++|||+|+++.. .++.||+.+|.
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~-------------~~~kv~iI~~a~~m~~~-------------aaNaLLK~LEE----- 132 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQL-------------GGRKVVLIEPAEAMNRN-------------AANALLKSLEE----- 132 (328)
T ss_pred CCCCHHHHHHHHHHHhhcccc-------------CCCeEEEECChhhCCHH-------------HHHHHHHHHhC-----
Confidence 346777777766443321111 25779999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+.+||.+ +.+|+.+.|.++||+.. +.|.+++.++..+.|.
T Consensus 133 -----Pp~~~~fiL~----t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 133 -----PSGDTVLLLI----SHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWLQ 175 (328)
T ss_pred -----CCCCeEEEEE----ECChhhCcHHHHhhcee-eeCCCcCHHHHHHHHH
Confidence 2356677766 36788999999999987 6999999999888774
No 337
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.70 E-value=3.7e-08 Score=113.93 Aligned_cols=118 Identities=21% Similarity=0.405 Sum_probs=74.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCce---EEEEecCCCCCCCC--CCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH---ILFIASGAFHLAKP--SDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~---ilfI~~gaf~~~~p--~dl~pel 1091 (1165)
+.||+|+||+--|... +|+.||-.++.+.....--++.-.| +++|++. || .+|.|.|
T Consensus 144 nRGIlYvDEvnlL~d~-------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm-----NPEeGeLrpqL 205 (423)
T COG1239 144 NRGILYVDEVNLLDDH-------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM-----NPEEGELRPQL 205 (423)
T ss_pred cCCEEEEeccccccHH-------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeec-----Cccccccchhh
Confidence 7899999999877766 8888998887653322212333333 5566664 45 5799999
Q ss_pred hccCCeEEEcCCC-CHHHHHHHHhhhHH------HhHHHHHH---------HHhhcCC-ceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPIRVELDSL-SISDFTRIMTSTNV------CLTKQYEA---------LLATEGI-KIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l-~~~~l~~il~~~~~------~l~~q~~~---------l~~~egv-~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.||.+.|...+. +.++...|...-.. ...++|.. ..+..++ .+..++++...||..|...
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~ 283 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL 283 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh
Confidence 9999998877665 45555555542111 11222211 1112222 4577889999999888765
No 338
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.70 E-value=8.9e-08 Score=113.59 Aligned_cols=224 Identities=20% Similarity=0.294 Sum_probs=145.2
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV 257 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~ 257 (1165)
....++|+..+...+.+.+..- + ....++|++|.+||||-.+|++|-+.. +.||+.+||+.+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv---A---------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~- 205 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV---A---------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE- 205 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH---h---------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-
Confidence 4569999999999988887642 0 123799999999999999999999988 57999999988743
Q ss_pred cccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCC
Q psy2392 258 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 337 (1165)
Q Consensus 258 GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 337 (1165)
..+-++||+.. .|.
T Consensus 206 -------~l~ESELFGhe-----------------------------------------------------------kGA 219 (464)
T COG2204 206 -------NLLESELFGHE-----------------------------------------------------------KGA 219 (464)
T ss_pred -------HHHHHHhhccc-----------------------------------------------------------ccC
Confidence 33344455441 111
Q ss_pred CCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhh
Q psy2392 338 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 417 (1165)
Q Consensus 338 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 417 (1165)
.+ +...+| .+ .++.
T Consensus 220 FT-----------------------------------GA~~~r-~G-----------------------------~fE~- 233 (464)
T COG2204 220 FT-----------------------------------GAITRR-IG-----------------------------RFEQ- 233 (464)
T ss_pred cC-----------------------------------Cccccc-Cc-----------------------------ceeE-
Confidence 10 000000 00 0122
Q ss_pred ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---CCCCCchhh
Q psy2392 418 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPEL 493 (1165)
Q Consensus 418 ~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---~p~~l~pel 493 (1165)
.+.|.+|||||..+.-. +|.-||..++.+.+..-.| ..-.-++=+|++++.... .--.|...|
T Consensus 234 A~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDL 300 (464)
T COG2204 234 ANGGTLFLDEIGEMPLE-------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDL 300 (464)
T ss_pred cCCceEEeeccccCCHH-------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHH
Confidence 27899999999988765 7889999998665543211 111225567888654321 122488888
Q ss_pred hCCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 494 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.-|+.+ .+.++||-+ +|+--++ +.++++..+.+. --...|+++|++.|..+. + -+..|-|++++
T Consensus 301 yyRLnV~~i~iPpLRER~EDIp~L~----~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~--W-----PGNVREL~N~v 367 (464)
T COG2204 301 YYRLNVVPLRLPPLRERKEDIPLLA----EHFLKRFAAELG--RPPKGFSPEALAALLAYD--W-----PGNVRELENVV 367 (464)
T ss_pred HhhhccceecCCcccccchhHHHHH----HHHHHHHHHHcC--CCCCCCCHHHHHHHHhCC--C-----ChHHHHHHHHH
Confidence 888875 345556543 4555555 444554444332 123589999999997644 3 46799999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
|+++-
T Consensus 368 er~~i 372 (464)
T COG2204 368 ERAVI 372 (464)
T ss_pred HHHHh
Confidence 99873
No 339
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1.5e-07 Score=116.47 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.6
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+++||++.++.|..++... . ....+ ...++|+||||||||++++++|+.++..++
T Consensus 85 el~~~~~ki~~l~~~l~~~--~----~~~~~---~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQ--V----LENAP---KRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred HhcCcHHHHHHHHHHHHhc--c----cccCC---CcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 7899999999988887542 0 00111 135999999999999999999999975543
No 340
>KOG0743|consensus
Probab=98.69 E-value=7.5e-08 Score=112.01 Aligned_cols=87 Identities=17% Similarity=0.362 Sum_probs=55.7
Q ss_pred cceEEEEecchhhhccCCCCCC----Cc--cchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNN----TD--ISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 492 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~----~~--~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pe 492 (1165)
+.+||+|..||.-...+..... .+ .+.- --.-||-.+||-.-++ ....|+ |+| ++.+..|+|+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~V-TlSGLLNfiDGlwSsc-----g~ERIi-vFT----TNh~EkLDPA 354 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRV-TLSGLLNFLDGLWSSC-----GDERII-VFT----TNHKEKLDPA 354 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCccee-ehHHhhhhhccccccC-----CCceEE-EEe----cCChhhcCHh
Confidence 6789999999987543222110 00 0111 1123777778743332 123444 344 4667889999
Q ss_pred hh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 493 LQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 493 l~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+ ||++..|.+.--+.+.++.+++
T Consensus 355 LlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 355 LLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred hcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 98 6999999999999999888874
No 341
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.69 E-value=9.4e-08 Score=115.47 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=56.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ece--eecCceEEEEEeCCccc----------CC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHL----------AK 485 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~--~~~t~~ilfI~~gaf~~----------~~ 485 (1165)
.+|++|||||+.+.+. +|..|+..||.+.+.. +.+ .....++.+|++.+-.. |.
T Consensus 294 ~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~ 360 (506)
T PRK09862 294 HNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT 360 (506)
T ss_pred cCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcC
Confidence 6899999999987665 7779999998776642 222 11234667777744221 11
Q ss_pred C-------CCCchhhhCCCCeeEecCCCCHHHHH
Q psy2392 486 P-------SDLIPELQGRFPIRVELDSLSISDFT 512 (1165)
Q Consensus 486 p-------~~l~pel~~R~~~~v~~~~L~~~~l~ 512 (1165)
| ..+.+.|+.||++.|.+.+++.+++.
T Consensus 361 ~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 361 PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHh
Confidence 2 24778999999999999999766543
No 342
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.68 E-value=1.2e-07 Score=115.75 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=67.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+|||||+.+... +|..||.+++...+. +.|.- ..-++-+||+..-.. .....|.+.|
T Consensus 322 ~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~-r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL 387 (538)
T PRK15424 322 HGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVT-RVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDL 387 (538)
T ss_pred CCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEE-ecCCCceeccceEEEEecCCCHHHHHhcccchHHH
Confidence 6899999999999877 999999999876553 22321 123456777765322 1223477788
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHH
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGI 1142 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai 1142 (1165)
..|+ .+.++++||-+ +|+..+.. ..+.++..- .+. .++++++
T Consensus 388 ~yrL~~~~I~lPPLReR~eDI~~L~~----~fl~~~~~~---~~~--~~~~~a~ 432 (538)
T PRK15424 388 FYRLSILRLQLPPLRERVADILPLAE----SFLKQSLAA---LSA--PFSAALR 432 (538)
T ss_pred HHHhcCCeecCCChhhchhHHHHHHH----HHHHHHHHH---cCC--CCCHHHH
Confidence 8886 46788999976 57776666 455554322 233 4677666
No 343
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.68 E-value=5.6e-08 Score=122.19 Aligned_cols=115 Identities=15% Similarity=0.288 Sum_probs=79.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..||.+++...+. +.|.- .+-++-+|++..-.. .....|.+.|
T Consensus 416 ~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~-~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL 481 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVIT-RLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQL 481 (638)
T ss_pred CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE-eCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHH
Confidence 6799999999999877 999999999876553 22321 112456777765321 2234577788
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.-|| ...|.++||-+ +|+..++. .++.++..- .|..+.|+++|++.|..+....
T Consensus 482 ~~~l~~~~i~lPpLreR~~Di~~L~~----~~l~~~~~~---~~~~~~~s~~a~~~L~~y~WPG 538 (638)
T PRK11388 482 YYALHAFEITIPPLRMRREDIPALVN----NKLRSLEKR---FSTRLKIDDDALARLVSYRWPG 538 (638)
T ss_pred hhhhceeEEeCCChhhhhhHHHHHHH----HHHHHHHHH---hCCCCCcCHHHHHHHHcCCCCC
Confidence 7776 45678999976 47877776 555555432 3445689999999998877655
No 344
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=5e-08 Score=120.56 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=51.5
Q ss_pred HHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 765 IIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 765 i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
.|-++++|..+ ++++||++.++.+..++... ..+ .. ....++|+||||||||++++++|+.++..+
T Consensus 73 pW~eKyrP~~l-----del~~~~~ki~~l~~~l~~~--~~~----~~---~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 73 PWVEKYKPETQ-----HELAVHKKKIEEVETWLKAQ--VLE----NA---PKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred chHHHhCCCCH-----HHhcCcHHHHHHHHHHHHhc--ccc----cC---CCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 46678999888 88999999999988887632 110 01 123589999999999999999999997654
Q ss_pred E
Q psy2392 845 I 845 (1165)
Q Consensus 845 i 845 (1165)
+
T Consensus 139 ~ 139 (637)
T TIGR00602 139 Q 139 (637)
T ss_pred H
Confidence 3
No 345
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.66 E-value=5e-08 Score=117.00 Aligned_cols=101 Identities=13% Similarity=0.249 Sum_probs=65.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
+..+++||||+.+.... ..|.+|+.++..-. ..... .|.++......-..+.+.|.+||.
T Consensus 202 ~~dvLiIDDiq~l~~k~-----------~~qeelf~l~N~l~--------~~~k~-IIlts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG-----------ATQEEFFHTFNSLH--------TEGKL-IVISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred cCCEEEEcchhhhcCCh-----------hhHHHHHHHHHHHH--------HCCCc-EEEecCCCHHHHhhhHHHHHhhhc
Confidence 45699999999987542 25777776654210 11112 223332111111246689999995
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.+.|.+++.+++.+||+ ..++..|+ .++++++.+||....
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~-----------~k~~~~~~--~l~~evl~~la~~~~ 304 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLE-----------RKAEALSI--RIEETALDFLIEALS 304 (445)
T ss_pred CCeEEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhcC
Confidence 889999999999999998 22333454 789999999987544
No 346
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.65 E-value=8e-07 Score=99.42 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=61.6
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCC--eeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI--KIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i--~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
..+.+|+..++.|++|+.+++.+++. .. +...|. ...|++++++.|.+.+ .+-.|.+..
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~----~~-------l~~~g~~~~~~~~~~~~~~i~~~s--------~G~p~~i~~ 237 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIE----HR-------LERAGNRDAPVFSEGAFDAIHRFS--------RGIPRLINI 237 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHH----HH-------HHHcCCCCCCCcCHHHHHHHHHHc--------CCcccHHHH
Confidence 35788999899999999999998883 11 222222 3468999999999987 445788998
Q ss_pred HHHHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 569 AMEKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 569 ~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+...++.....+-. -.||.+.|++.+.+
T Consensus 238 l~~~~~~~a~~~~~---~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 238 LCDRLLLSAFLEEK---REIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHcCC---CCCCHHHHHHHHHH
Confidence 88888765433221 24787777766554
No 347
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.64 E-value=4.9e-07 Score=98.93 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=47.8
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
++++|.+..++.|....... -.|. +..++||||+.|||||+++|++...+ |..++.++..++
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~F--l~G~--------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQF--LQGL--------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHH--HcCC--------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 37889999999988877654 1121 23799999999999999999999988 556666666554
No 348
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.63 E-value=2e-07 Score=112.95 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=88.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+..++.+.+..-.+ .....++-+|++..... .....|.++|.
T Consensus 232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5789999999999876 7778999998655432111 11123566777754321 12345889999
Q ss_pred CCC-CeeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCee-EeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~-~~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l-~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|| ...|.++||.+ +|+..++ +.++.++.. ..|..+ .+++++++.|..+.. .+..|-|++++
T Consensus 299 ~~l~~~~i~~PpLreR~~Di~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~w-------pgNv~eL~~~i 364 (469)
T PRK10923 299 HRLNVIRVHLPPLRERREDIPRLA----RHFLQVAAR---ELGVEAKLLHPETEAALTRLAW-------PGNVRQLENTC 364 (469)
T ss_pred HHhcceeecCCCcccchhhHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 998 57888999876 4666665 344444433 234433 689999999987554 36789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 365 ~~~~~ 369 (469)
T PRK10923 365 RWLTV 369 (469)
T ss_pred HHHHH
Confidence 99874
No 349
>PRK09087 hypothetical protein; Validated
Probab=98.63 E-value=8.9e-08 Score=105.14 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred CchhhhCCCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchh
Q psy2392 489 LIPELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRL 566 (1165)
Q Consensus 489 l~pel~~R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l 566 (1165)
+.|.|++||. ..+++++|+.+++.+||. +.+...| +.++++++++|++.+. ...|.+
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~-----------~~~~~~~--~~l~~ev~~~La~~~~--------r~~~~l 192 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIF-----------KLFADRQ--LYVDPHVVYYLVSRME--------RSLFAA 192 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHhh--------hhHHHH
Confidence 4799999994 678999999999999994 1223334 5789999999999883 456777
Q ss_pred HHHHHHHHHHhhcccCCCeeEEcccccccccccC
Q psy2392 567 YTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 567 ~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
..++.++...... . + ..||...+++.++..
T Consensus 193 ~~~l~~L~~~~~~-~-~--~~it~~~~~~~l~~~ 222 (226)
T PRK09087 193 QTIVDRLDRLALE-R-K--SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHH-h-C--CCCCHHHHHHHHHhh
Confidence 7777776433221 1 1 237777777777643
No 350
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.61 E-value=3.9e-07 Score=113.04 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=82.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceee--cCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGII--KTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~--~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
++|++|||||+++.+. +|..||..|+.+.++. +.|.. ...++.+||+.+-.. .-..|.+.|..
T Consensus 84 ~~GvL~lDEi~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~Lld 149 (589)
T TIGR02031 84 PRGVLYVDMANLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE-GGGGLPDHLLD 149 (589)
T ss_pred CCCcEeccchhhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc-ccCCCCHHHHH
Confidence 5789999999999876 7779999998665433 22211 123556777633111 01258899999
Q ss_pred CCCeeEecCCCC-HHHHHHHHhhhh----------HhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcc
Q psy2392 496 RFPIRVELDSLS-ISDFTRIMTSTN----------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGAR 564 (1165)
Q Consensus 496 R~~~~v~~~~L~-~~~l~~Il~~~~----------~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR 564 (1165)
||++.|.+..+. .++..+|+.... ..+...........--.+.++++.++.|++.+...+- .|-|
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv----~s~R 225 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI----SGHR 225 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC----CCcc
Confidence 999988887654 444567764311 1111111112222233568899999999999987521 2345
Q ss_pred hhHHHHH
Q psy2392 565 RLYTAME 571 (1165)
Q Consensus 565 ~l~~~ie 571 (1165)
....++.
T Consensus 226 a~i~~~r 232 (589)
T TIGR02031 226 ADLFAVR 232 (589)
T ss_pred HHHHHHH
Confidence 5544443
No 351
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.61 E-value=1.6e-07 Score=116.39 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=78.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeecc--CceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIK--TDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~--t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
+.|++|||||+++... +|..||..||...|+. +.|... ..++.+||+-.-.. .-..|.+.|..
T Consensus 84 ~~GvL~lDEi~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~Lld 149 (589)
T TIGR02031 84 PRGVLYVDMANLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE-GGGGLPDHLLD 149 (589)
T ss_pred CCCcEeccchhhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc-ccCCCCHHHHH
Confidence 6799999999999876 9999999998665433 333221 13456676432110 01258899999
Q ss_pred cCCeEEEcCCCC-HHHHHHHHhhhH----------HHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1094 RFPIRVELDSLS-ISDFTRIMTSTN----------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1094 R~~i~v~l~~l~-~~~l~~il~~~~----------~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
||++.|.+..+. .++..+|++.-. ..+...+.......--.+.++++.+++|+.++...+
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g 220 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG 220 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC
Confidence 999998887664 444566665311 111222222222222345889999999999998763
No 352
>PRK06620 hypothetical protein; Validated
Probab=98.60 E-value=2.1e-07 Score=101.32 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=39.0
Q ss_pred hhhhccCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1089 PELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1089 pel~gR~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|.|++||- ..+++++++.+++.++++ +.+...|+ .++++++++|++.+-
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~-----------k~~~~~~l--~l~~ev~~~L~~~~~ 180 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIF-----------KHFSISSV--TISRQIIDFLLVNLP 180 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcc
Confidence 99999987 357999999999988887 22333455 788999999998764
No 353
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.8e-07 Score=104.16 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC-
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~- 1096 (1165)
.-||.+||+|.+...... +-..|+..-+- .+.++.+|+.+.-..- ...|.|-+.+|+.
T Consensus 124 ~~IvvLDEid~L~~~~~~----------~LY~L~r~~~~----------~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~~ 182 (366)
T COG1474 124 TVIVILDEVDALVDKDGE----------VLYSLLRAPGE----------NKVKVSIIAVSNDDKF-LDYLDPRVKSSLGP 182 (366)
T ss_pred eEEEEEcchhhhccccch----------HHHHHHhhccc----------cceeEEEEEEeccHHH-HHHhhhhhhhccCc
Confidence 459999999999987321 33333333221 1445666666541100 2346677777754
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..+.|+|++.++|+.||..--. ..+ ..| .+++++++.+|..++..
T Consensus 183 ~~I~F~pY~a~el~~Il~~R~~-------~~~-~~~---~~~~~vl~lia~~~a~~ 227 (366)
T COG1474 183 SEIVFPPYTAEELYDILRERVE-------EGF-SAG---VIDDDVLKLIAALVAAE 227 (366)
T ss_pred ceeeeCCCCHHHHHHHHHHHHH-------hhc-cCC---CcCccHHHHHHHHHHHc
Confidence 4468999999999999992111 112 223 48899999999887765
No 354
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.59 E-value=2e-08 Score=105.24 Aligned_cols=58 Identities=28% Similarity=0.487 Sum_probs=43.9
Q ss_pred EecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 185 IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
++|.+.+.+.+.+.+... . ..+.++|++|++||||+.+|+++-+.. +.||+.+||+.+
T Consensus 1 liG~s~~m~~~~~~~~~~----a--------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----A--------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----T--------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHH----h--------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 478888888887777643 1 124799999999999999999999876 579999999986
No 355
>PRK05642 DNA replication initiation factor; Validated
Probab=98.59 E-value=1.6e-07 Score=103.68 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=63.4
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC--C
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF--P 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~--~ 1096 (1165)
-+++||+|+.+..... .|..|..++.... .....++|++ ......-..+.|.|.+|| -
T Consensus 99 d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n~~~--------~~g~~ilits-~~~p~~l~~~~~~L~SRl~~g 158 (234)
T PRK05642 99 ELVCLDDLDVIAGKAD-----------WEEALFHLFNRLR--------DSGRRLLLAA-SKSPRELPIKLPDLKSRLTLA 158 (234)
T ss_pred CEEEEechhhhcCChH-----------HHHHHHHHHHHHH--------hcCCEEEEeC-CCCHHHcCccCccHHHHHhcC
Confidence 4899999998865421 4667887775311 1112233333 211111123479999999 3
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.+++++++.+++.+||+. .....| +.++++++++|++.+-
T Consensus 159 l~~~l~~~~~e~~~~il~~-----------ka~~~~--~~l~~ev~~~L~~~~~ 199 (234)
T PRK05642 159 LVFQMRGLSDEDKLRALQL-----------RASRRG--LHLTDEVGHFILTRGT 199 (234)
T ss_pred eeeecCCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhcC
Confidence 5679999999999999881 122235 4788999999988654
No 356
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.58 E-value=5.4e-08 Score=102.01 Aligned_cols=58 Identities=28% Similarity=0.487 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 783 IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
++|...+...+.+.+... . ..+..+|++|++||||+.+|+++-+.. +.||+.+||+.+
T Consensus 1 liG~s~~m~~~~~~~~~~----a--------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----A--------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----T--------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHH----h--------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 468888887777776642 1 114789999999999999999999977 579999999986
No 357
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.58 E-value=1.5e-07 Score=102.77 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=63.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..-+++||.||.+.+. ...|..|..+++.-. .....++|++.. ....-..+.|.|.+||.
T Consensus 97 ~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~--------~~~k~li~ts~~-~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLI--------ESGKQLILTSDR-PPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHH--------HTTSEEEEEESS--TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHH--------hhCCeEEEEeCC-CCccccccChhhhhhHh
Confidence 4569999999999765 236888888887422 223334444422 21222236789999964
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.+++++++.++..+||. ..++..|+ .++++++++|++..
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~-----------~~a~~~~~--~l~~~v~~~l~~~~ 198 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQ-----------KKAKERGI--ELPEEVIEYLARRF 198 (219)
T ss_dssp CSEEEEE----HHHHHHHHH-----------HHHHHTT----S-HHHHHHHHHHT
T ss_pred hcchhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCcHHHHHHHHHhh
Confidence 588999999999999999 44556677 58999999999864
No 358
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.58 E-value=2.8e-07 Score=116.88 Aligned_cols=115 Identities=18% Similarity=0.319 Sum_probs=78.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--eccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--~~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
.+|++||||||.+... +|..|+..++...+. +.| .....++-+|++..... .....|.++|
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~-~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L 535 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFE-RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 535 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEE-eCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHH
Confidence 5799999999999876 999999999865432 112 12234567888876432 2234577888
Q ss_pred hccCCe-EEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce-EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i-~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l-~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+.. .|+++||-+ +|+..++. ..+.++.. ..|..+ .|+++|++.|.......
T Consensus 536 ~~~l~~~~i~lPpLreR~~Di~~L~~----~~l~~~~~---~~~~~~~~~s~~al~~L~~y~WPG 593 (686)
T PRK15429 536 YYRLNVFPIHLPPLRERPEDIPLLVK----AFTFKIAR---RMGRNIDSIPAETLRTLSNMEWPG 593 (686)
T ss_pred HhccCeeEEeCCChhhhHhHHHHHHH----HHHHHHHH---HcCCCCCCcCHHHHHHHHhCCCCC
Confidence 888654 578999975 56766665 45555443 335554 59999999998766655
No 359
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.58 E-value=8.1e-07 Score=112.15 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHHHhcccEecchhhHHHHHHHHHhhhhhh----cccCCC---CCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQ----QITGPL---QQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 175 ~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~----~l~~~~---~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..|...+.-.|.|++.+|+.|.-++.....+. .+.++. .......++||+|.||||||.+|+.+++..
T Consensus 442 ~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ls 516 (915)
T PTZ00111 442 RILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS 516 (915)
T ss_pred HHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhC
Confidence 45566777899999999999887776542211 011110 001112599999999999999999999965
No 360
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.57 E-value=5.7e-08 Score=101.21 Aligned_cols=60 Identities=33% Similarity=0.565 Sum_probs=42.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.-|++||++|+++.. .|+.||+.||...-+| .||... ++|+.++|.+++|+-.
T Consensus 103 ~KviiI~~ad~l~~~-------------a~NaLLK~LEepp~~~----------~fiL~t----~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 103 YKVIIIDEADKLTEE-------------AQNALLKTLEEPPENT----------YFILIT----NNPSKILPTIRSRCQV 155 (162)
T ss_dssp SEEEEEETGGGS-HH-------------HHHHHHHHHHSTTTTE----------EEEEEE----S-GGGS-HHHHTTSEE
T ss_pred ceEEEeehHhhhhHH-------------HHHHHHHHhcCCCCCE----------EEEEEE----CChHHChHHHHhhceE
Confidence 459999999999987 8999999999754444 444442 5788999999999876
Q ss_pred EEEcCCCC
Q psy2392 1098 RVELDSLS 1105 (1165)
Q Consensus 1098 ~v~l~~l~ 1105 (1165)
+.|++|+
T Consensus 156 -i~~~~ls 162 (162)
T PF13177_consen 156 -IRFRPLS 162 (162)
T ss_dssp -EEE----
T ss_pred -EecCCCC
Confidence 5888875
No 361
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.56 E-value=1.2e-07 Score=117.48 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=71.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee-----ee--eccC----ceEEEEecCCCCCCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-----YG--IIKT----DHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k-----~~--~~~t----~~ilfI~~gaf~~~~p~ 1085 (1165)
+.|++|||||+.+... +|..|+..++...+... .+ .+.+ -++-+|++|.-. -..
T Consensus 226 nGGtL~LDei~~L~~~-------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~--ll~ 290 (637)
T PRK13765 226 HKGVLFIDEINTLDLE-------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD--ALE 290 (637)
T ss_pred CCcEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC--HHH
Confidence 6899999999999433 88899998875544321 00 0111 245678887631 124
Q ss_pred CCchhhhccCC---eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1086 DLIPELQGRFP---IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1086 dl~pel~gR~~---i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+.|+|..||. +.+.|++-.++....+. .++......+..+|-...|+++|+.+|.+.+-.
T Consensus 291 ~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~-----~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 291 NMHPALRSRIKGYGYEVYMRDTMEDTPENRR-----KLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred hhhHHHHHHhccCeEEEEcccccCCCHHHHH-----HHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56899999998 77888765433222111 222233334444444458999999999987663
No 362
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.1e-07 Score=106.17 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=58.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|+++.. .++.||+.+|... .+.+||... .+|+.+.|.+++||-+
T Consensus 107 ~kv~iI~~a~~m~~~-------------aaNaLLK~LEEPp----------~~~~fiL~t----~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 107 RKVVLIEPAEAMNRN-------------AANALLKSLEEPS----------GDTVLLLIS----HQPSRLLPTIKSRCQQ 159 (328)
T ss_pred CeEEEECChhhCCHH-------------HHHHHHHHHhCCC----------CCeEEEEEE----CChhhCcHHHHhhcee
Confidence 458999999999987 7889999999633 345666543 5888999999999998
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.++..+.|.+
T Consensus 160 -~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 160 -QACPLPSNEESLQWLQQ 176 (328)
T ss_pred -eeCCCcCHHHHHHHHHH
Confidence 69999999999988874
No 363
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.54 E-value=3.3e-07 Score=108.80 Aligned_cols=208 Identities=21% Similarity=0.336 Sum_probs=142.5
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVG 856 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~G 856 (1165)
...++|+..+...+...+..- - ....++|+.|.+||||-.+|++|-+.. +.||+.+||..+..
T Consensus 140 ~~~liG~S~am~~l~~~i~kv----A--------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-- 205 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKV----A--------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-- 205 (464)
T ss_pred cCCceecCHHHHHHHHHHHHH----h--------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH--
Confidence 468999999999988887632 1 113789999999999999999999998 57999999988643
Q ss_pred ccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC
Q psy2392 857 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 936 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l 936 (1165)
..+-+++|+.. ++.||++.. =+.|+|
T Consensus 206 ------~l~ESELFGhe-------------------------------------kGAFTGA~~-----------~r~G~f 231 (464)
T COG2204 206 ------NLLESELFGHE-------------------------------------KGAFTGAIT-----------RRIGRF 231 (464)
T ss_pred ------HHHHHHhhccc-------------------------------------ccCcCCccc-----------ccCcce
Confidence 23445566543 344444321 123433
Q ss_pred CCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy2392 937 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 1016 (1165)
Q Consensus 937 d~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~ 1016 (1165)
+.|
T Consensus 232 ------------------------------------------------------------------------E~A----- 234 (464)
T COG2204 232 ------------------------------------------------------------------------EQA----- 234 (464)
T ss_pred ------------------------------------------------------------------------eEc-----
Confidence 223
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccC--ceEEEEecCCCCCC---CCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLA---KPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t--~~ilfI~~gaf~~~---~p~dl~pel 1091 (1165)
+.|.+|+|||-.+.-. +|.-||..++...+. +.|.-.+ -++-+||++.-... +--.|...|
T Consensus 235 ~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~-rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDL 300 (464)
T COG2204 235 NGGTLFLDEIGEMPLE-------------LQVKLLRVLQEREFE-RVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDL 300 (464)
T ss_pred CCceEEeeccccCCHH-------------HHHHHHHHHHcCeeE-ecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHH
Confidence 7899999999988776 999999999865543 3443222 35678888764322 223477888
Q ss_pred hccCCe-EEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i-~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
--||.+ .+.++||- .+|+--++. ..+++++.-++.. ...|+++|++.|..+..-.
T Consensus 301 yyRLnV~~i~iPpLRER~EDIp~L~~----hfl~~~~~~~~~~--~~~~s~~a~~~L~~y~WPG 358 (464)
T COG2204 301 YYRLNVVPLRLPPLRERKEDIPLLAE----HFLKRFAAELGRP--PKGFSPEALAALLAYDWPG 358 (464)
T ss_pred HhhhccceecCCcccccchhHHHHHH----HHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCh
Confidence 888664 34677774 466766666 5666666555422 2478999999997666554
No 364
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.54 E-value=3e-07 Score=111.38 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=79.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
.+|.+||||||.+... +|..|+.+++...+. +.|.. ..-++-+|++..... .+...|.++|
T Consensus 232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~-~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L 297 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFY-RVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 (469)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEE-eCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHH
Confidence 5789999999999876 899999999865543 22221 123567777765322 1234578999
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce-EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l-~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| .+.+.++||-+ +|+..++. ..+.++..- .|..+ .|+++|++.|..+.+-.
T Consensus 298 ~~~l~~~~i~~PpLreR~~Di~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 298 FHRLNVIRVHLPPLRERREDIPRLAR----HFLQVAARE---LGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred HHHhcceeecCCCcccchhhHHHHHH----HHHHHHHHH---cCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998 68889999976 57766666 555555433 34333 68999999988766654
No 365
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=5.5e-07 Score=103.65 Aligned_cols=92 Identities=11% Similarity=0.203 Sum_probs=70.4
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.++|.+++.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 85 ~~I~id~iR~l~~~~~~~~~~-------------g~~KV~iI~~a~~m~~~-------------AaNaLLKtLEE----- 133 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQQ-------------GGNKVVYIQGAERLTEA-------------AANALLKTLEE----- 133 (325)
T ss_pred CCCCHHHHHHHHHHHhhcccc-------------CCceEEEEechhhhCHH-------------HHHHHHHHhcC-----
Confidence 346777887766543322211 25679999999999876 66799999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+++||..+ .+|+.+.|.++||+.. +.|.+++.+++.+.|.
T Consensus 134 -----Pp~~~~fiL~t----~~~~~llpTI~SRC~~-~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 134 -----PRPNTYFLLQA----DLSAALLPTIYSRCQT-WLIHPPEEQQALDWLQ 176 (325)
T ss_pred -----CCCCeEEEEEE----CChHhCchHHHhhceE-EeCCCCCHHHHHHHHH
Confidence 45677787763 5789999999999986 5899999999888774
No 366
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.52 E-value=5.8e-07 Score=106.81 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=80.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece--eecCceEEEEEeCCcccCC---CCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHLAK---PSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~--~~~t~~ilfI~~gaf~~~~---p~~l~pel 493 (1165)
+.|-+|+|||-.+... .|.-||..++...+.- .| ....-+|=+|||++-...+ --.|+--|
T Consensus 340 ~gGTLFLDEIgempl~-------------LQaKLLRVLQEkei~r-vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDL 405 (560)
T COG3829 340 NGGTLFLDEIGEMPLP-------------LQAKLLRVLQEKEIER-VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDL 405 (560)
T ss_pred cCCeEEehhhccCCHH-------------HHHHHHHHHhhceEEe-cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhh
Confidence 7899999999988766 7778999997544321 11 1111245577775432111 11255555
Q ss_pred hCCCCee-EecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeE-eCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 494 QGRFPIR-VELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIE-FVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 494 ~~R~~~~-v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~-~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
--|+.+. |.++||- ++|+.-+. ..++..+.+. .+..+. ++++++..|.++. + -+..|-|.++
T Consensus 406 YYRLNV~~i~iPPLReR~eDI~~L~----~~Fl~k~s~~---~~~~v~~ls~~a~~~L~~y~--W-----PGNVRELeNv 471 (560)
T COG3829 406 YYRLNVIPITIPPLRERKEDIPLLA----EYFLDKFSRR---YGRNVKGLSPDALALLLRYD--W-----PGNVRELENV 471 (560)
T ss_pred eeeeceeeecCCCcccCcchHHHHH----HHHHHHHHHH---cCCCcccCCHHHHHHHHhCC--C-----CchHHHHHHH
Confidence 5555432 3455553 35555555 4455555443 355555 8999999987654 3 4679999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
||+++-
T Consensus 472 iER~v~ 477 (560)
T COG3829 472 IERAVN 477 (560)
T ss_pred HHHHHh
Confidence 999874
No 367
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.52 E-value=7e-07 Score=105.70 Aligned_cols=56 Identities=32% Similarity=0.444 Sum_probs=41.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCC--CeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA--PFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~--~fi~l~~se~ 852 (1165)
+++++-+...+.+..++.. .++++|+||||||||++|+.+|..+.. .+.++++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF 232 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF 232 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee
Confidence 3566777777777666542 378999999999999999999998843 3444555444
No 368
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.49 E-value=8.4e-07 Score=106.73 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=85.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++|||||+.+... +|..|+.+++.+.+..-.+ .....++-+|++..... .....|.++|.
T Consensus 233 ~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 5799999999999876 7789999998765432111 11122455677654321 11245888888
Q ss_pred CCCC-eeEecCCCCHH--HHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~~--~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..|.++||.+- |+..++ ..++.++... .+.. ..+++++++.|..+.. .+..|-|+++|
T Consensus 300 ~~l~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNvreL~~~i 365 (445)
T TIGR02915 300 YRIAEISITIPPLRSRDGDAVLLA----NAFLERFARE---LKRKTKGFTDDALRALEAHAW-------PGNVRELENKV 365 (445)
T ss_pred HHhccceecCCCchhchhhHHHHH----HHHHHHHHHH---hCCCCCCCCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 8864 66788888753 555555 3444444332 2333 5789999999987553 36689999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 366 ~~a~~ 370 (445)
T TIGR02915 366 KRAVI 370 (445)
T ss_pred HHHHH
Confidence 99874
No 369
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=7.1e-07 Score=102.52 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=68.3
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|++.+.+.+.......-.. ..+.|++||++|+++.. .++.||+.+|-
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~-------------g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----- 139 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQY-------------GIAQVVIVDPADAINRA-------------ACNALLKTLEE----- 139 (319)
T ss_pred ccccHHHHHHHHHHHhhCccc-------------CCcEEEEeccHhhhCHH-------------HHHHHHHHhhC-----
Confidence 457788877766543322111 14679999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+.+||..+ ++|+.+.|.++||+.. +.|.+++.++..+.|.
T Consensus 140 -----Pp~~~~fiL~~----~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 140 -----PSPGRYLWLIS----AQPARLPATIRSRCQR-LEFKLPPAHEALAWLL 182 (319)
T ss_pred -----CCCCCeEEEEE----CChhhCchHHHhhheE-eeCCCcCHHHHHHHHH
Confidence 34556666653 5788999999999986 5899999998888773
No 370
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.48 E-value=1.5e-07 Score=113.03 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhcc
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~gR 1094 (1165)
..+++|||+|.+.+. .+.|..|+.++..-. .....++|++. ..|.+ +.+.|.+|
T Consensus 195 ~dvLlIDDi~~l~~~-----------~~~q~elf~~~n~l~--------~~~k~iIitsd----~~p~~l~~l~~rL~SR 251 (440)
T PRK14088 195 VDVLLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVSR 251 (440)
T ss_pred CCEEEEechhhhcCc-----------HHHHHHHHHHHHHHH--------HcCCeEEEECC----CCHHHHHHHHHHHhhH
Confidence 469999999998654 236777776654211 11122333321 23443 55788899
Q ss_pred CC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1095 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1095 ~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|. ..+.|++++.+.+..||+ ..++.+++ .++++++.+||+...
T Consensus 252 ~~~gl~v~i~~pd~e~r~~IL~-----------~~~~~~~~--~l~~ev~~~Ia~~~~ 296 (440)
T PRK14088 252 FQMGLVAKLEPPDEETRKKIAR-----------KMLEIEHG--ELPEEVLNFVAENVD 296 (440)
T ss_pred HhcCceEeeCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHhccc
Confidence 84 567999999999999998 23334455 678999999987653
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.48 E-value=3e-08 Score=98.31 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=24.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
|+||+|+||+|||++|+++|+.++..|.++.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tp 34 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTP 34 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--T
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecC
Confidence 6899999999999999999999999999998853
No 372
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.47 E-value=1.4e-06 Score=105.38 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=89.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+.+++.+.+..-.+ .....++-+|+++.-.. .....|.++|.
T Consensus 228 ~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~ 294 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294 (463)
T ss_pred CCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHH
Confidence 5789999999999866 6778999888654332111 11122455777764321 12345888999
Q ss_pred CCCC-eeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..|.++||. .+|+..++ ..++.++... .|.. ..|+++|++.|..+.. -+..|-|++++
T Consensus 295 ~rl~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNvreL~~~~ 360 (463)
T TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLA----RHFLALAARE---LDVEPKLLDPEALERLKQLRW-------PGNVRQLENLC 360 (463)
T ss_pred HHhCcceecCCCcccchhhHHHHH----HHHHHHHHHH---hCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 9987 488999999 78888887 3444444332 2332 3689999999987643 46789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 361 ~~~~~ 365 (463)
T TIGR01818 361 RWLTV 365 (463)
T ss_pred HHHHH
Confidence 99874
No 373
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.46 E-value=1.4e-06 Score=110.00 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=78.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeeccC--ceEEEEecCCC-----CCCCC----
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKT--DHILFIASGAF-----HLAKP---- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~t--~~ilfI~~gaf-----~~~~p---- 1084 (1165)
..|++||||||++... .|..|+..||..+++ .|-|...+ ....+||+..- ...++
T Consensus 557 dgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~en 623 (915)
T PTZ00111 557 NGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN 623 (915)
T ss_pred CCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccc
Confidence 5799999999999776 889999999988775 45553333 24556666432 22222
Q ss_pred CCCchhhhccCCeE-EEcCCCCHHHHHHH----Hhh-------------------------------------hHHHhHH
Q psy2392 1085 SDLIPELQGRFPIR-VELDSLSISDFTRI----MTS-------------------------------------TNVCLTK 1122 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~-v~l~~l~~~~l~~i----l~~-------------------------------------~~~~l~~ 1122 (1165)
-+|.|.|++||.++ +.++.++++.=.+| ++. ....+++
T Consensus 624 i~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLr 703 (915)
T PTZ00111 624 INISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLR 703 (915)
T ss_pred cCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHH
Confidence 35789999999654 55666665543332 210 1234577
Q ss_pred HHHHHHhhcCCceEeCHHHHHHHHHH
Q psy2392 1123 QYEALLATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1123 q~~~l~~~egv~l~~~~~ai~~ia~~ 1148 (1165)
.|-...+. .++-.++++|.+.|.+.
T Consensus 704 kYI~YAR~-~~~P~Ls~eA~~~i~~~ 728 (915)
T PTZ00111 704 MYIKFSKL-HCFPKLSDEAKKVITRE 728 (915)
T ss_pred HHHHHHhc-cCCCCCCHHHHHHHHHH
Confidence 77776654 57778999999988763
No 374
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=3.4e-07 Score=112.03 Aligned_cols=100 Identities=12% Similarity=0.203 Sum_probs=66.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC-
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~- 1095 (1165)
+..+++||+|+.+.... ..|..|.-++..-. ....-++|++ ...-..-..+.+.|.+||
T Consensus 377 ~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~--------e~gk~IIITS-d~~P~eL~~l~~rL~SRf~ 436 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLH--------NANKQIVLSS-DRPPKQLVTLEDRLRNRFE 436 (617)
T ss_pred cCCEEEEehhccccCCH-----------HHHHHHHHHHHHHH--------hcCCCEEEec-CCChHhhhhccHHHHhhhh
Confidence 45699999999997542 25677777766321 1112222322 211111124668899998
Q ss_pred -CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 -~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+.|++++++.+....||. ..++..|+ .+++|++++|+...
T Consensus 437 ~GLvv~I~~PD~EtR~aIL~-----------kka~~r~l--~l~~eVi~yLa~r~ 478 (617)
T PRK14086 437 WGLITDVQPPELETRIAILR-----------KKAVQEQL--NAPPEVLEFIASRI 478 (617)
T ss_pred cCceEEcCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHhc
Confidence 7889999999999999998 33444555 77899999998764
No 375
>KOG1969|consensus
Probab=98.45 E-value=1.7e-06 Score=104.85 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=70.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccC--ceeeee-----------ceeecCceEEEEEeCCcccCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG--TTVNTK-----------YGIIKTDHILFIASGAFHLAK 485 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg--~~v~~~-----------~~~~~t~~ilfI~~gaf~~~~ 485 (1165)
++.-++|||||-.-+ +..+.+|.+++. ...+.+ -+..-++.|+-||.-
T Consensus 387 rP~CLViDEIDGa~~-------------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd------ 447 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAPR-------------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND------ 447 (877)
T ss_pred CcceEEEecccCCcH-------------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC------
Confidence 355677999995432 244466666652 111111 123346778888872
Q ss_pred CCCCchhhh--CCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCc
Q psy2392 486 PSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563 (1165)
Q Consensus 486 p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GA 563 (1165)
-..|+|+ .-+..++.|.+++.+-|.+-|. .....+|+ .++..++..|++++. .+.
T Consensus 448 --LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~-----------~IC~rE~m--r~d~~aL~~L~el~~--------~DI 504 (877)
T KOG1969|consen 448 --LYAPALRPLRPFAEIIAFVPPSQSRLVERLN-----------EICHRENM--RADSKALNALCELTQ--------NDI 504 (877)
T ss_pred --ccchhhhhcccceEEEEecCCChhHHHHHHH-----------HHHhhhcC--CCCHHHHHHHHHHhc--------chH
Confidence 2467776 3477788999999998887763 34455666 677899999999983 455
Q ss_pred chhHHHHH
Q psy2392 564 RRLYTAME 571 (1165)
Q Consensus 564 R~l~~~ie 571 (1165)
|.=-+.+.
T Consensus 505 RsCINtLQ 512 (877)
T KOG1969|consen 505 RSCINTLQ 512 (877)
T ss_pred HHHHHHHH
Confidence 55444443
No 376
>PRK09087 hypothetical protein; Validated
Probab=98.45 E-value=3.8e-07 Score=100.19 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=61.4
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC--C-CchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS--D-LIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~--d-l~pel~gR~ 1095 (1165)
+.++||+||.+.. .|..|..++.. .......+.|++.. .|. . +.|.|.+||
T Consensus 89 ~~l~iDDi~~~~~--------------~~~~lf~l~n~--------~~~~g~~ilits~~----~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 89 GPVLIEDIDAGGF--------------DETGLFHLINS--------VRQAGTSLLMTSRL----WPSSWNVKLPDLKSRL 142 (226)
T ss_pred CeEEEECCCCCCC--------------CHHHHHHHHHH--------HHhCCCeEEEECCC----ChHHhccccccHHHHH
Confidence 6899999997631 24456555432 11112233333321 232 2 469999998
Q ss_pred C--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1096 P--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1096 ~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ..+++++++.+++.+||+ ..+...|+ .+++|++++|++.+.
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~-----------~~~~~~~~--~l~~ev~~~La~~~~ 186 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIF-----------KLFADRQL--YVDPHVVYYLVSRME 186 (226)
T ss_pred hCCceeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhh
Confidence 3 568999999999999999 33344455 789999999998765
No 377
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.45 E-value=1.7e-06 Score=104.45 Aligned_cols=130 Identities=19% Similarity=0.245 Sum_probs=86.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---CCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---~p~~l~pel~ 494 (1165)
..|++||||||.+... +|..|+..++.+.+..-.+ .....++-+|++...... ....|.++|.
T Consensus 237 ~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~ 303 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLF 303 (457)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5789999999999876 6778999988654332111 111235667777543211 2235788888
Q ss_pred CCC-CeeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~-~~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+ ...|.++||. .+|+..++ ..++.++... .+.. +.+++++++.|..+.. .+..|-|+++|
T Consensus 304 ~~l~~~~i~~ppLreR~~di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNv~eL~~~~ 369 (457)
T PRK11361 304 YRLNVIHLILPPLRDRREDISLLA----NHFLQKFSSE---NQRDIIDIDPMAMSLLTAWSW-------PGNIRELSNVI 369 (457)
T ss_pred HHhccceecCCChhhchhhHHHHH----HHHHHHHHHH---cCCCCCCcCHHHHHHHHcCCC-------CCcHHHHHHHH
Confidence 776 4667788887 36666555 3445444332 2444 5799999999987553 46799999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 370 ~~~~~ 374 (457)
T PRK11361 370 ERAVV 374 (457)
T ss_pred HHHHH
Confidence 99764
No 378
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.4e-06 Score=100.27 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=58.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .|.+||... .+|+.+.|.+++||-.
T Consensus 108 ~KV~iI~~a~~m~~~-------------AaNaLLKtLEEPp----------~~~~fiL~t----~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 108 NKVVYIQGAERLTEA-------------AANALLKTLEEPR----------PNTYFLLQA----DLSAALLPTIYSRCQT 160 (325)
T ss_pred ceEEEEechhhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChHhCchHHHhhceE
Confidence 459999999999987 7889999999743 445666653 4789999999999987
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.+++.+.|.+
T Consensus 161 -~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 161 -WLIHPPEEQQALDWLQA 177 (325)
T ss_pred -EeCCCCCHHHHHHHHHH
Confidence 58999999999988874
No 379
>KOG2035|consensus
Probab=98.44 E-value=1e-06 Score=96.48 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=73.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...+|.|-|.|+++.. .|-.|...||...-+++. ..+ ++.-|.++|++++||-
T Consensus 127 ~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkYs~~~Rl--------Il~------cns~SriIepIrSRCl 179 (351)
T KOG2035|consen 127 PFKVVVINEADELTRD-------------AQHALRRTMEKYSSNCRL--------ILV------CNSTSRIIEPIRSRCL 179 (351)
T ss_pred ceEEEEEechHhhhHH-------------HHHHHHHHHHHHhcCceE--------EEE------ecCcccchhHHhhhee
Confidence 3568999999999987 899999999976655543 222 2345789999999976
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. |..+.++.+|+..+|. ..++.||..+ .++.+.+||+.+-
T Consensus 180 ~-iRvpaps~eeI~~vl~-----------~v~~kE~l~l--p~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 180 F-IRVPAPSDEEITSVLS-----------KVLKKEGLQL--PKELLKRIAEKSN 219 (351)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHhcccC--cHHHHHHHHHHhc
Confidence 4 5899999999999998 6677888854 5888888887653
No 380
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=9.1e-07 Score=103.92 Aligned_cols=45 Identities=49% Similarity=0.693 Sum_probs=40.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.||+||+.||+.+..+..- ..|+||+||||||||++|+.+...+.
T Consensus 179 ~DV~GQ~~AKrAleiAAAG----------------gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAG----------------GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hhhcCcHHHHHHHHHHHhc----------------CCcEEEecCCCCchHHhhhhhcccCC
Confidence 6899999999999988763 27899999999999999999888874
No 381
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.4e-06 Score=101.06 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=71.1
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|++.+.+.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 110 ~~I~idqiR~l~~~~~~~~~~-------------~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----- 158 (342)
T PRK06964 110 KEIKIEQVRALLDFCGVGTHR-------------GGARVVVLYPAEALNVA-------------AANALLKTLEE----- 158 (342)
T ss_pred cccCHHHHHHHHHHhccCCcc-------------CCceEEEEechhhcCHH-------------HHHHHHHHhcC-----
Confidence 468888888877543322111 25679999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+++||..+ ++|..+.|.++||+. .+.|.+++.+++.+.|.
T Consensus 159 -----Pp~~t~fiL~t----~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 159 -----PPPGTVFLLVS----ARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLA 201 (342)
T ss_pred -----CCcCcEEEEEE----CChhhCcHHHHhcCE-EEEecCCCHHHHHHHHH
Confidence 35667777763 679999999999995 57999999999888884
No 382
>KOG2170|consensus
Probab=98.41 E-value=3.6e-06 Score=93.47 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+...|+..|.+.++||--|++.|..++...|.- +. +.+|-.+-|+|+|||||..+++.||+.+
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-----~~--p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-----PN--PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-----CC--CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 3467889999999999999999999999876532 11 2245799999999999999999999988
No 383
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.2e-06 Score=100.70 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+++|... .+.+||... ++|+.++|.+++||-.
T Consensus 114 ~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp----------~~~~fiL~~----~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 114 AQVVIVDPADAINRA-------------ACNALLKTLEEPS----------PGRYLWLIS----AQPARLPATIRSRCQR 166 (319)
T ss_pred cEEEEeccHhhhCHH-------------HHHHHHHHhhCCC----------CCCeEEEEE----CChhhCchHHHhhheE
Confidence 359999999999876 7889999999743 333455443 5789999999999987
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.++..+.|.+
T Consensus 167 -i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 -LEFKLPPAHEALAWLLA 183 (319)
T ss_pred -eeCCCcCHHHHHHHHHH
Confidence 58999999999988874
No 384
>KOG0990|consensus
Probab=98.40 E-value=7.8e-07 Score=99.38 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=79.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
....|++||.|..+.. .|++|-..+|..++++++- .| .+.|..+.|++++||.
T Consensus 131 ~fKlvILDEADaMT~~-------------AQnALRRviek~t~n~rF~--------ii------~n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-------------AQNALRRVIEKYTANTRFA--------TI------SNPPQKIHPAQQSRCT 183 (360)
T ss_pred ceeEEEecchhHhhHH-------------HHHHHHHHHHHhccceEEE--------Ee------ccChhhcCchhhcccc
Confidence 5779999999999877 7778988888766665442 11 2457789999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.. .|.||+......++.+ ..+.+ ++..+++++..+++.. .++.|...+.|.....
T Consensus 184 rf-rf~pl~~~~~~~r~sh-----------i~e~e--~~~~~~~~~~a~~r~s--------~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 184 RF-RFAPLTMAQQTERQSH-----------IRESE--QKETNPEGYSALGRLS--------VGDMRVALNYLQSILK 238 (360)
T ss_pred cC-CCCCCChhhhhhHHHH-----------HHhcc--hhhcCHHHHHHHHHHh--------HHHHHHHHHHHHHHHH
Confidence 64 9999999888887741 12222 3467788888887776 4677888888876653
No 385
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=6.8e-07 Score=107.63 Aligned_cols=101 Identities=16% Similarity=0.314 Sum_probs=67.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+.-+++||||+.+.... ..|..|..++..-.-.. ..+++.+.+ .|. .+.+.|.+
T Consensus 206 ~~dvLiIDDiq~l~~k~-----------~~~e~lf~l~N~~~~~~-------k~iIltsd~-----~P~~l~~l~~rL~S 262 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE-----------KTNEIFFTIFNNFIEND-------KQLFFSSDK-----SPELLNGFDNRLIT 262 (450)
T ss_pred cCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcC-------CcEEEECCC-----CHHHHhhccHHHHH
Confidence 45699999999886531 25667776665311111 122222222 233 35688889
Q ss_pred cC--CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1094 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1094 R~--~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
|| .+.+.|++|+.+++.+||+ ..++..|+.+.++++++++||..+-.
T Consensus 263 R~~~Gl~~~L~~pd~e~r~~iL~-----------~~~~~~gl~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 263 RFNMGLSIAIQKLDNKTATAIIK-----------KEIKNQNIKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HHhCCceeccCCcCHHHHHHHHH-----------HHHHhcCCCCCCCHHHHHHHHHccCC
Confidence 98 4788999999999999999 23344566557999999999987653
No 386
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.40 E-value=2.6e-07 Score=103.56 Aligned_cols=119 Identities=18% Similarity=0.304 Sum_probs=87.8
Q ss_pred EEEEEeCCcccCCCCC-CchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 473 ILFIASGAFHLAKPSD-LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 473 ilfI~~gaf~~~~p~~-l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
|.+|+++ +.+|+. ++|+|++|+.+ ++|++|+.+|+.++|+ +.+.. .. .+ ...++.+++++++.|++.|
T Consensus 9 i~LIGAT---TENP~f~vn~ALlSR~~v-~~l~~L~~~di~~il~---ral~~-~~-~~--~~~~~~i~~~al~~ia~~a 77 (300)
T PRK14700 9 IILIGAT---TENPTYYLNDALVSRLFI-LRLKRLSLVATQKLIE---KALSQ-DE-VL--AKHKFKIDDGLYNAMHNYN 77 (300)
T ss_pred EEEEeec---CCCccceecHhhhhhhhe-eeecCCCHHHHHHHHH---HHHHh-hh-cc--CCcCCCcCHHHHHHHHHhc
Confidence 5567763 477775 99999999977 4899999999999996 33322 11 11 1235789999999999988
Q ss_pred HhccccCCccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccccccCccccc---------cccccccc
Q psy2392 552 YCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINED---------LSRYDSGM 613 (1165)
Q Consensus 552 ~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~d---------ls~~i~~~ 613 (1165)
+++||...+.+|.++.- ..+ +....||.+.|++.++.....+| +|+|+||+
T Consensus 78 --------~GDaR~aLN~LE~a~~~-~~~--~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSi 137 (300)
T PRK14700 78 --------EGDCRKILNLLERMFLI-STR--GDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSV 137 (300)
T ss_pred --------CCHHHHHHHHHHHHHhh-ccc--cCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHh
Confidence 79999999999997631 111 11245899999888876554444 88999988
No 387
>PRK15115 response regulator GlrR; Provisional
Probab=98.40 E-value=1.7e-06 Score=103.99 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=84.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece--eecCceEEEEEeCCccc---CCCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~--~~~t~~ilfI~~gaf~~---~~p~~l~pel 493 (1165)
.+|.+||||||.+... +|..|+..++.+.+.. .| .....++-+|+++.... .....|.++|
T Consensus 228 ~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~-~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l 293 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRP-LGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293 (444)
T ss_pred CCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEe-CCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHH
Confidence 5789999999999877 6778999998665421 11 11123567777754321 0112467777
Q ss_pred hCCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 494 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 494 ~~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
..|+. ..|.++||.+ +|+..++ ..++.++.. ..+.. ..++++|++.|..+.. .+..|-|+++
T Consensus 294 ~~~l~~~~i~lPpLr~R~eDi~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~W-------pgNvreL~~~ 359 (444)
T PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLA----NHLLRQAAE---RHKPFVRAFSTDAMKRLMTASW-------PGNVRQLVNV 359 (444)
T ss_pred HHhhceeeecCCChHhccccHHHHH----HHHHHHHHH---HhCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHH
Confidence 77765 5677888875 4666666 344444332 22333 3589999999987553 4678999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
|++++.
T Consensus 360 i~~~~~ 365 (444)
T PRK15115 360 IEQCVA 365 (444)
T ss_pred HHHHHH
Confidence 999764
No 388
>KOG0743|consensus
Probab=98.40 E-value=1.8e-06 Score=100.67 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=34.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~ 853 (1165)
.++.|||||||||||++.-|+|+.++...+-++-++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 47899999999999999999999999988888877643
No 389
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.9e-06 Score=100.00 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=69.7
Q ss_pred eeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee
Q psy2392 385 KIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK 464 (1165)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~ 464 (1165)
.|+|.+++.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 87 ~I~idqiR~l~~~~~~~~~~-------------g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE------ 134 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARL-------------GGAKVVWLPDAALLTDA-------------AANALLKTLEE------ 134 (334)
T ss_pred cCCHHHHHHHHHHHhhcccc-------------CCceEEEEcchHhhCHH-------------HHHHHHHHhcC------
Confidence 47788888776554322221 25779999999999977 56699999996
Q ss_pred ceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHH
Q psy2392 465 YGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIM 515 (1165)
Q Consensus 465 ~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il 515 (1165)
...+.+||... .+|+.+.|.++||+.. +.|.+++.++..+.|
T Consensus 135 ----Pp~~t~fiL~t----~~~~~lLpTIrSRCq~-~~~~~~~~~~~~~~L 176 (334)
T PRK07993 135 ----PPENTWFFLAC----REPARLLATLRSRCRL-HYLAPPPEQYALTWL 176 (334)
T ss_pred ----CCCCeEEEEEE----CChhhChHHHHhcccc-ccCCCCCHHHHHHHH
Confidence 35667777663 5799999999999986 699999999888777
No 390
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.38 E-value=3e-06 Score=92.87 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=45.6
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~s 850 (1165)
++++|.+..++.|....... -.|. +..++||||+.|||||+++|++...+ +..++.++..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~F--l~G~--------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQF--LQGL--------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHH--HcCC--------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 57889999999998877654 1121 14799999999999999999999988 4444554443
No 391
>KOG2035|consensus
Probab=98.38 E-value=4.7e-06 Score=91.48 Aligned_cols=92 Identities=20% Similarity=0.387 Sum_probs=68.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.+|+|-|.|+++.. .|.+|-.-||...-+++ ++.+| +.-|.++|++++|+-
T Consensus 127 ~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkYs~~~R--------lIl~c------ns~SriIepIrSRCl 179 (351)
T KOG2035|consen 127 PFKVVVINEADELTRD-------------AQHALRRTMEKYSSNCR--------LILVC------NSTSRIIEPIRSRCL 179 (351)
T ss_pred ceEEEEEechHhhhHH-------------HHHHHHHHHHHHhcCce--------EEEEe------cCcccchhHHhhhee
Confidence 6789999999999977 77799988986443321 22222 345789999999974
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
.|....++.+|+..+|. ..++.+|+.+. ++.+..|++.+
T Consensus 180 -~iRvpaps~eeI~~vl~-----------~v~~kE~l~lp--~~~l~rIa~kS 218 (351)
T KOG2035|consen 180 -FIRVPAPSDEEITSVLS-----------KVLKKEGLQLP--KELLKRIAEKS 218 (351)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHhcccCc--HHHHHHHHHHh
Confidence 35889999999999984 33556677554 88888888766
No 392
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.37 E-value=1.7e-06 Score=104.32 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=76.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
..|++||||||.+... +|..|+.+++...+.. .|.. ...++-+|++..-.. .....|.++|
T Consensus 237 ~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~-~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l 302 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFER-IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302 (457)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEe-CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHH
Confidence 5799999999999876 8999999998754332 2221 123466777764221 1223577788
Q ss_pred hccC-CeEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+ .+.+.++||- .+|+..+.. ..+.++..- .|.. +.|+++|++.|..+....
T Consensus 303 ~~~l~~~~i~~ppLreR~~di~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~wpg 360 (457)
T PRK11361 303 FYRLNVIHLILPPLRDRREDISLLAN----HFLQKFSSE---NQRDIIDIDPMAMSLLTAWSWPG 360 (457)
T ss_pred HHHhccceecCCChhhchhhHHHHHH----HHHHHHHHH---cCCCCCCcCHHHHHHHHcCCCCC
Confidence 8776 5667889997 467766655 555555432 2433 478999999988765544
No 393
>KOG1969|consensus
Probab=98.37 E-value=2.5e-06 Score=103.51 Aligned_cols=37 Identities=35% Similarity=0.571 Sum_probs=34.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
.+-+||+||||-||||||+.+|+..|...+.+++|+=
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe 362 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE 362 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc
Confidence 4788899999999999999999999999999999984
No 394
>PRK15115 response regulator GlrR; Provisional
Probab=98.35 E-value=1.8e-06 Score=103.77 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=75.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+..++...+ ++.|.- ...++-+|++..... .....|.++|
T Consensus 228 ~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~-~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l 293 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKV-RPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293 (444)
T ss_pred CCCEEEEEccccCCHH-------------HHHHHHHHHhhCCE-EeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHH
Confidence 5799999999999877 89999999987655 222211 123567788765321 0112456666
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce-EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l-~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. ..+.++||-+ +|+..++. ..+.++..- .+..+ .|+++|++.|..+....
T Consensus 294 ~~~l~~~~i~lPpLr~R~eDi~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~Wpg 351 (444)
T PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLAN----HLLRQAAER---HKPFVRAFSTDAMKRLMTASWPG 351 (444)
T ss_pred HHhhceeeecCCChHhccccHHHHHH----HHHHHHHHH---hCCCCCCcCHHHHHHHHhCCCCC
Confidence 66654 5678888875 57776666 455554332 23222 58999999998776655
No 395
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.34 E-value=1.7e-06 Score=104.00 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=76.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++||||||.+... +|..|+.+++...+.. .|.. ..-++-+|++..... .....|.++|
T Consensus 233 ~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~-~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L 298 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIER-LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDL 298 (445)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEe-CCCCceeeeceEEEEecCCCHHHHHHcCCccHHH
Confidence 6799999999999876 9999999998765432 2221 112456677754321 1124577888
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+ ...|+++||-+ +|+..+.. ..+.++..-. |.. ..|+++|++.|..+..-.
T Consensus 299 ~~~l~~~~i~lPpLr~R~~Di~~l~~----~~l~~~~~~~---~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 299 FYRIAEISITIPPLRSRDGDAVLLAN----AFLERFAREL---KRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred HHHhccceecCCCchhchhhHHHHHH----HHHHHHHHHh---CCCCCCCCHHHHHHHHhCCCCC
Confidence 8885 46678999965 46666655 5555554433 332 478999999998766544
No 396
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=4.2e-06 Score=96.22 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=58.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .++.||+.+|. ...+.+||... ++|+.+.|.++||+.
T Consensus 108 ~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----------Pp~~t~fiL~t----~~~~~lLpTI~SRCq 160 (319)
T PRK06090 108 GYRLFVIEPADAMNES-------------ASNALLKTLEE----------PAPNCLFLLVT----HNQKRLLPTIVSRCQ 160 (319)
T ss_pred CceEEEecchhhhCHH-------------HHHHHHHHhcC----------CCCCeEEEEEE----CChhhChHHHHhcce
Confidence 4679999999999876 56699999996 34567777663 579999999999998
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
. +.|.+++.++..+.|.
T Consensus 161 ~-~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 161 Q-WVVTPPSTAQAMQWLK 177 (319)
T ss_pred e-EeCCCCCHHHHHHHHH
Confidence 5 5999999998887773
No 397
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.33 E-value=1.3e-05 Score=102.38 Aligned_cols=36 Identities=36% Similarity=0.571 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+.+||-|.||+|||+|..+||+..|..+++++.|+-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ 1579 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ 1579 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeecccc
Confidence 689999999999999999999999999999999883
No 398
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.33 E-value=8.2e-07 Score=107.45 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=57.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeec--cCceEEEEecCC------CCC----CC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGA------FHL----AK 1083 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~--~t~~ilfI~~ga------f~~----~~ 1083 (1165)
+.|++|+|||+.+... +|..|+..||...++ .+.|.. ...++.+||+.+ |.. +.
T Consensus 294 ~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~ 360 (506)
T PRK09862 294 HNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT 360 (506)
T ss_pred cCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcC
Confidence 7899999999987665 899999999887764 333322 234566777643 210 11
Q ss_pred C-------CCCchhhhccCCeEEEcCCCCHHHHHH
Q psy2392 1084 P-------SDLIPELQGRFPIRVELDSLSISDFTR 1111 (1165)
Q Consensus 1084 p-------~dl~pel~gR~~i~v~l~~l~~~~l~~ 1111 (1165)
| ..+.+.|+.||.+.|++++++.+++.+
T Consensus 361 ~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 361 PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSK 395 (506)
T ss_pred HHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhc
Confidence 2 247789999999999999997765543
No 399
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.32 E-value=8.9e-06 Score=91.00 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=39.1
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCC--ceEeCHHHHHHHHHHHhc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI--KIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv--~l~~~~~ai~~ia~~a~~ 1151 (1165)
..+.+|+..+++|++|+.+|+.+++. . .++..|. ...|++++++.|++.+-.
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~----~-------~l~~~g~~~~~~~~~~~~~~i~~~s~G 230 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIE----H-------RLERAGNRDAPVFSEGAFDAIHRFSRG 230 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHH----H-------HHHHcCCCCCCCcCHHHHHHHHHHcCC
Confidence 46889999999999999999998888 2 2222232 246899999999887654
No 400
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.30 E-value=4.2e-06 Score=98.47 Aligned_cols=219 Identities=22% Similarity=0.369 Sum_probs=137.9
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~Gyv 260 (1165)
.|||+..|...+.+.|..- + .....+|+.|.|||||..+|++|-+.. ..||+.+||+.+-+
T Consensus 224 ~iIG~S~am~~ll~~i~~V---A---------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe---- 287 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV---A---------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE---- 287 (550)
T ss_pred cceecCHHHHHHHHHHHHH---h---------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch----
Confidence 8999999999988887642 0 023799999999999999999999988 68999999998743
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
+-.-+++|+.- .|.
T Consensus 288 ----sLlESELFGHe-----------------------------------------------------------KGA--- 301 (550)
T COG3604 288 ----SLLESELFGHE-----------------------------------------------------------KGA--- 301 (550)
T ss_pred ----HHHHHHHhccc-----------------------------------------------------------ccc---
Confidence 23345566540 111
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
|++.-+.|+ -......+
T Consensus 302 --------------------------------FTGA~~~r~-------------------------------GrFElAdG 318 (550)
T COG3604 302 --------------------------------FTGAINTRR-------------------------------GRFELADG 318 (550)
T ss_pred --------------------------------cccchhccC-------------------------------cceeecCC
Confidence 111000000 00112368
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCc--eEEEEEeCCccc---CCCCCCchhhhC
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD--HILFIASGAFHL---AKPSDLIPELQG 495 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~--~ilfI~~gaf~~---~~p~~l~pel~~ 495 (1165)
|-+|+|||--+-.+ +|.-||..+-.+.+. +.|.-.|- .+=+||+++-.. ..--.|..-|.-
T Consensus 319 GTLFLDEIGelPL~-------------lQaKLLRvLQegEie-RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy 384 (550)
T COG3604 319 GTLFLDEIGELPLA-------------LQAKLLRVLQEGEIE-RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYY 384 (550)
T ss_pred CeEechhhccCCHH-------------HHHHHHHHHhhccee-ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhh
Confidence 99999999988766 777888887533322 12211111 244678765321 112236666666
Q ss_pred CCCee-EecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCC-eeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 496 RFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 496 R~~~~-v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i-~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
|+.++ +.++||-+ +|+--+. ..++++... ..|. .+.++.+|++.|.++.+ -+..|-|.++|+
T Consensus 385 RLsV~Pl~lPPLRER~~DIplLA----~~Fle~~~~---~~gr~~l~ls~~Al~~L~~y~w-------PGNVRELen~ve 450 (550)
T COG3604 385 RLSVFPLELPPLRERPEDIPLLA----GYFLEKFRR---RLGRAILSLSAEALELLSSYEW-------PGNVRELENVVE 450 (550)
T ss_pred cccccccCCCCcccCCccHHHHH----HHHHHHHHH---hcCCcccccCHHHHHHHHcCCC-------CCcHHHHHHHHH
Confidence 65532 24555543 3333333 334444433 3466 78999999999987664 377999999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+.+-
T Consensus 451 Ravl 454 (550)
T COG3604 451 RAVL 454 (550)
T ss_pred HHHH
Confidence 9864
No 401
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.27 E-value=2e-06 Score=102.29 Aligned_cols=60 Identities=32% Similarity=0.492 Sum_probs=48.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
++|+|...+...+...+... .....++|+.|.+||||..+|+++-+.. +.||+.+||.-+
T Consensus 245 ~~Iig~S~~m~~~~~~akr~------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRI------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred hhhccCCHHHHHHHHHHHhh------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 58889988776666655431 1125789999999999999999999988 689999999876
No 402
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.26 E-value=4.3e-06 Score=101.12 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=79.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+. +.|. ....++-+|+++.-.. .....|.++|
T Consensus 228 ~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~-~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L 293 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFY-RVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDL 293 (463)
T ss_pred CCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEE-ECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHH
Confidence 5799999999999876 899999999865433 2221 1122456777765332 2234577899
Q ss_pred hccCC-eEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. +.+.++||. .+|+..++. ..+.++..-. |.. ..|+++|++.|.....-.
T Consensus 294 ~~rl~~~~i~lPpLr~R~~Di~~l~~----~~l~~~~~~~---~~~~~~~~~~a~~~L~~~~wpg 351 (463)
T TIGR01818 294 FHRLNVIRIHLPPLRERREDIPRLAR----HFLALAAREL---DVEPKLLDPEALERLKQLRWPG 351 (463)
T ss_pred HHHhCcceecCCCcccchhhHHHHHH----HHHHHHHHHh---CCCCCCcCHHHHHHHHhCCCCC
Confidence 99987 488999999 788888777 5555554332 322 368999999998665443
No 403
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4.1e-06 Score=97.12 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=69.2
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
+.|+|++.+.+...-.. .+ .-....|++||++|+++.. .++.||+.+|...
T Consensus 110 ~~I~idqiR~l~~~~~~-----------~~--~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp--- 160 (342)
T PRK06964 110 KEIKIEQVRALLDFCGV-----------GT--HRGGARVVVLYPAEALNVA-------------AANALLKTLEEPP--- 160 (342)
T ss_pred cccCHHHHHHHHHHhcc-----------CC--ccCCceEEEEechhhcCHH-------------HHHHHHHHhcCCC---
Confidence 45788888876643221 00 0013459999999999887 7789999999643
Q ss_pred eeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1062 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
.+.+||..+ ++|..+.|.+++||- .+.|++++.+++.+.|.+
T Consensus 161 -------~~t~fiL~t----~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 161 -------PGTVFLLVS----ARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------cCcEEEEEE----CChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 344666554 489999999999996 579999999999999974
No 404
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.24 E-value=1.1e-05 Score=93.74 Aligned_cols=118 Identities=21% Similarity=0.367 Sum_probs=75.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCc--eeeee-ceeecCceEEEEEeCCcccCCC--CCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT--TVNTK-YGIIKTDHILFIASGAFHLAKP--SDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~--~v~~~-~~~~~t~~ilfI~~gaf~~~~p--~~l~pel 493 (1165)
++||+++||+--+... +|+.||..++.+ .|.-. +..-+..+.++|+|. || .+|+|.|
T Consensus 144 nRGIlYvDEvnlL~d~-------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm-----NPEeGeLrpqL 205 (423)
T COG1239 144 NRGILYVDEVNLLDDH-------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM-----NPEEGELRPQL 205 (423)
T ss_pred cCCEEEEeccccccHH-------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeec-----Cccccccchhh
Confidence 7899999999888755 888999988764 22221 223344567788885 45 4699999
Q ss_pred hCCCCeeEecCCCCH-HHHHHHHhhhhH------hHHHHHHHH---------HhhcC-CeeEeCHHHHHHHHHHHHhc
Q psy2392 494 QGRFPIRVELDSLSI-SDFTRIMTSTNV------CLTKQYEAL---------LATEG-IKIEFVDDGIQRLAEIAYCI 554 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~~-~~l~~Il~~~~~------~l~~~~~~l---------l~~~~-i~l~~~~~a~~~la~~a~~~ 554 (1165)
+-||...|....+.. ++..+|...-.. .+..++... .+..+ ..+..++++...++..|...
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~ 283 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL 283 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh
Confidence 999999888876554 444445431111 011111111 11222 34677889999999999874
No 405
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=1e-05 Score=93.02 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .|.+||... ++|+.+.|.+.+||-.
T Consensus 109 ~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp----------~~t~fiL~t----~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 109 YRLFVIEPADAMNES-------------ASNALLKTLEEPA----------PNCLFLLVT----HNQKRLLPTIVSRCQQ 161 (319)
T ss_pred ceEEEecchhhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChhhChHHHHhccee
Confidence 359999999999877 7889999999743 344565543 4799999999999986
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|++++.++..+.|.+
T Consensus 162 -~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 -WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -EeCCCCCHHHHHHHHHH
Confidence 69999999999988874
No 406
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=9.7e-06 Score=94.09 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .+.+||... .+|+.+.|.++|||-.
T Consensus 109 ~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp----------~~t~fiL~t----~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 109 AKVVWLPDAALLTDA-------------AANALLKTLEEPP----------ENTWFFLAC----REPARLLATLRSRCRL 161 (334)
T ss_pred ceEEEEcchHhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChhhChHHHHhcccc
Confidence 459999999999987 7789999999744 344665553 4799999999999996
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.++..+.|.+
T Consensus 162 -~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 -HYLAPPPEQYALTWLSR 178 (334)
T ss_pred -ccCCCCCHHHHHHHHHH
Confidence 69999999999988863
No 407
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=5.2e-06 Score=95.96 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=66.0
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|+|.+.+.+.......-.. ..+.|++||++|.+.+. .|+.||..+|...
T Consensus 91 ~~I~id~iR~l~~~~~~~p~~-------------~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~--- 141 (325)
T PRK08699 91 LQIKIDAVREIIDNVYLTSVR-------------GGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP--- 141 (325)
T ss_pred CCcCHHHHHHHHHHHhhCccc-------------CCceEEEEechhhCCHH-------------HHHHHHHHHHhCc---
Confidence 347888888766443322111 25779999999999876 5668999998521
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
.++.||.++ .+|+.+.|.+.+|+-+ +.|.+++.++..+.|.
T Consensus 142 -------~~~~~Ilvt----h~~~~ll~ti~SRc~~-~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 142 -------PQVVFLLVS----HAADKVLPTIKSRCRK-MVLPAPSHEEALAYLR 182 (325)
T ss_pred -------CCCEEEEEe----CChHhChHHHHHHhhh-hcCCCCCHHHHHHHHH
Confidence 234455542 5678899999999976 5899999999887773
No 408
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.18 E-value=3.3e-06 Score=83.73 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+...|+..|++.++||.-|++.|..++...|.. ..+ .+|-.+.|+||||||||.+++.||+.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---~~p----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---PNP----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---CCC----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4677899999999999999999999999876322 122 245789999999999999999999996
No 409
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.17 E-value=5.8e-06 Score=99.26 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=83.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++||||||.+.+. +|..|+..++.+.+....+ ....-++-+|++..-.. ..+..|.+.|.
T Consensus 233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~ 299 (441)
T PRK10365 233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5899999999999876 6778999888665432111 01112344666643221 12345777777
Q ss_pred CCCC-eeEecCCCCHH--HHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~~--~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..+.++||-+. |+..++ ..++.++... .+.. ..+++++++.|..+.. .+..|-|++++
T Consensus 300 ~~l~~~~i~~ppLreR~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgN~reL~~~~ 365 (441)
T PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLA----GHFLQRFAER---NRKAVKGFTPQAMDLLIHYDW-------PGNIRELENAV 365 (441)
T ss_pred HHhccceecCCChhhcchhHHHHH----HHHHHHHHHH---hCCCCCCcCHHHHHHHHhCCC-------CCHHHHHHHHH
Confidence 7764 56778888754 666665 3344443322 2322 4589999999987653 46789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 366 ~~~~~ 370 (441)
T PRK10365 366 ERAVV 370 (441)
T ss_pred HHHHH
Confidence 99764
No 410
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.12 E-value=8.4e-06 Score=75.04 Aligned_cols=66 Identities=32% Similarity=0.406 Sum_probs=55.6
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 506 LSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 506 L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
|+.+++.+|+. ..+.+..+.+..+|+.+.|+++++++|++.|++ +++|||+|+++|++.+++..++
T Consensus 1 L~~~~l~~I~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GAR~l~r~i~~~i~~~la~ 66 (81)
T PF10431_consen 1 LSEEDLEKIAD----LQLKKLNERLKEKGIELEFDDAVVDYLAEKGYD-----PEYGARPLRRIIEREIEPPLAD 66 (81)
T ss_dssp --HHHHHHHHH----SHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHH-----TTTTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcc-----cCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999994 567777777788999999999999999999998 6899999999999999877553
No 411
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.11 E-value=1.5e-05 Score=93.61 Aligned_cols=138 Identities=19% Similarity=0.286 Sum_probs=90.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~R 496 (1165)
-.+++||.|+.+..+. ..|..|.-++.- ......- +|.++. ..|.. +.|-|.+|
T Consensus 176 ~dlllIDDiq~l~gk~-----------~~qeefFh~FN~--------l~~~~kq-Ivltsd---r~P~~l~~~~~rL~SR 232 (408)
T COG0593 176 LDLLLIDDIQFLAGKE-----------RTQEEFFHTFNA--------LLENGKQ-IVLTSD---RPPKELNGLEDRLRSR 232 (408)
T ss_pred cCeeeechHhHhcCCh-----------hHHHHHHHHHHH--------HHhcCCE-EEEEcC---CCchhhccccHHHHHH
Confidence 4589999999987552 234454433321 0011111 222321 22443 56999999
Q ss_pred CC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 497 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 497 ~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
|. +.+.+.+|+.+.+..||.. ..+..+ +.++++++.+|+..-. -..|-|..+++++.
T Consensus 233 ~~~Gl~~~I~~Pd~e~r~aiL~k-----------ka~~~~--~~i~~ev~~~la~~~~--------~nvReLegaL~~l~ 291 (408)
T COG0593 233 LEWGLVVEIEPPDDETRLAILRK-----------KAEDRG--IEIPDEVLEFLAKRLD--------RNVRELEGALNRLD 291 (408)
T ss_pred HhceeEEeeCCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHHhh--------ccHHHHHHHHHHHH
Confidence 76 7889999999999999941 223344 4788999999998774 35677888888876
Q ss_pred HHhhcccCCCeeEEcccccccccccCccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSRLGDLSINED 605 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~d 605 (1165)
.-..+. ...||.+.|++.+.+......
T Consensus 292 ~~a~~~----~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 292 AFALFT----KRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHhc----CccCcHHHHHHHHHHhhcccc
Confidence 655443 236899999999887765433
No 412
>KOG2680|consensus
Probab=98.10 E-value=1.6e-05 Score=87.79 Aligned_cols=67 Identities=30% Similarity=0.505 Sum_probs=49.7
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEecccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTE 256 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~~ 256 (1165)
.++..+||-.|.++.-..+..- +-| . .....+|+.|+||+|||.+|-.+|+.+| .||..+.+|++.+
T Consensus 38 ~s~GmVGQ~~AR~Aagvi~kmi--~eg----k---iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 38 VSEGMVGQVKARKAAGVILKMI--REG----K---IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred ccccchhhHHHHHHhHHHHHHH--HcC----c---ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 3578999998876544433221 111 1 0126899999999999999999999995 7999999999854
No 413
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.09 E-value=1.3e-05 Score=94.35 Aligned_cols=205 Identities=24% Similarity=0.402 Sum_probs=131.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~Gy 857 (1165)
..|+|+..|...+.+.|..- ......+|+.|.|||||-.+|++|-+.. ..||+.+||+-+-+
T Consensus 223 ~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe--- 287 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE--- 287 (550)
T ss_pred ccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch---
Confidence 47899999999998888642 1124789999999999999999999998 68999999998632
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
.-.-+++|+.- ++.|+++.. =|.|+++
T Consensus 288 -----sLlESELFGHe-------------------------------------KGAFTGA~~-----------~r~GrFE 314 (550)
T COG3604 288 -----SLLESELFGHE-------------------------------------KGAFTGAIN-----------TRRGRFE 314 (550)
T ss_pred -----HHHHHHHhccc-------------------------------------ccccccchh-----------ccCccee
Confidence 23345666553 345554421 1345442
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.| .
T Consensus 315 ------------------------------------------------------------------------lA-----d 317 (550)
T COG3604 315 ------------------------------------------------------------------------LA-----D 317 (550)
T ss_pred ------------------------------------------------------------------------ec-----C
Confidence 22 6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCc--eEEEEecCCCCC---CCCCCCchhhh
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD--HILFIASGAFHL---AKPSDLIPELQ 1092 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~--~ilfI~~gaf~~---~~p~dl~pel~ 1092 (1165)
.|-+|+|||--|.-. +|--||..+-...+. +.|.-.|- .+-.|||++=-. ..--.|..-|-
T Consensus 318 GGTLFLDEIGelPL~-------------lQaKLLRvLQegEie-RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLY 383 (550)
T COG3604 318 GGTLFLDEIGELPLA-------------LQAKLLRVLQEGEIE-RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLY 383 (550)
T ss_pred CCeEechhhccCCHH-------------HHHHHHHHHhhccee-ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhh
Confidence 899999999877665 888888877543332 23432222 245677754211 01122444444
Q ss_pred cc---CCeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCC-ceEeCHHHHHHHHHHHhccC
Q psy2392 1093 GR---FPIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1093 gR---~~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv-~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
-| ||+ .++||-+ +|+--... ..+++...- .|. .+.|+.+|++.|.++.+-+|
T Consensus 384 yRLsV~Pl--~lPPLRER~~DIplLA~----~Fle~~~~~---~gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 384 YRLSVFPL--ELPPLRERPEDIPLLAG----YFLEKFRRR---LGRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred hccccccc--CCCCcccCCccHHHHHH----HHHHHHHHh---cCCcccccCHHHHHHHHcCCCCCc
Confidence 45 444 4677743 45543333 344444433 466 67999999999988777663
No 414
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=1.2e-05 Score=78.45 Aligned_cols=37 Identities=41% Similarity=0.683 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC---ceEEeccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP---FIKIEATKFT 255 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~---~i~ld~s~~~ 255 (1165)
.+++|+||||||||++++.+|..+... ++.++++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 689999999999999999999999664 7777776543
No 415
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=9.9e-06 Score=79.08 Aligned_cols=38 Identities=39% Similarity=0.651 Sum_probs=32.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCC---eEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAP---FIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~---fi~l~~se~~ 853 (1165)
..+++|+||||||||++++.++..+... ++.++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 3689999999999999999999999765 7777776643
No 416
>KOG2227|consensus
Probab=98.07 E-value=0.00013 Score=85.57 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=77.8
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEe-CCcccCCCCCCchhhhCC--
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIAS-GAFHLAKPSDLIPELQGR-- 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~-gaf~~~~p~~l~pel~~R-- 496 (1165)
.=++++||+|.+.++.+. .|+.+.|=. ...+++++.|+- .+.. --.-|.|-|..|
T Consensus 257 ~~llVlDEmD~L~tr~~~-------------vLy~lFewp-------~lp~sr~iLiGiANslD--lTdR~LprL~~~~~ 314 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQT-------------VLYTLFEWP-------KLPNSRIILIGIANSLD--LTDRFLPRLNLDLT 314 (529)
T ss_pred eEEEEechhhHHhhcccc-------------eeeeehhcc-------cCCcceeeeeeehhhhh--HHHHHhhhhhhccC
Confidence 448899999999977544 566666532 234556555543 2211 112356666654
Q ss_pred -CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 497 -FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 497 -~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
-|-++.|+|++.+++++||+ +.|.++-. ..|-+.|++..|+.... ..++-|.+..++.+++|
T Consensus 315 ~~P~~l~F~PYTk~qI~~Il~-----------~rl~~~~t-~~~~~~Aie~~ArKvaa-----~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 315 IKPKLLVFPPYTKDQIVEILQ-----------QRLSEEST-SIFLNAAIELCARKVAA-----PSGDLRKALDVCRRAIE 377 (529)
T ss_pred CCCceeeecCCCHHHHHHHHH-----------HHHhcccc-cccchHHHHHHHHHhcc-----CchhHHHHHHHHHHHHH
Confidence 45688999999999999995 22333322 23445789988888765 36778999999888776
Q ss_pred H
Q psy2392 576 E 576 (1165)
Q Consensus 576 ~ 576 (1165)
=
T Consensus 378 I 378 (529)
T KOG2227|consen 378 I 378 (529)
T ss_pred H
Confidence 3
No 417
>KOG2680|consensus
Probab=98.06 E-value=5.5e-05 Score=83.77 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=56.1
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCcccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGY 857 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~Gy 857 (1165)
.+-.+||-.|.++.-..+..- +-|- ...+.+|+.|+||+|||.+|-.+|+.+| .||..+.+|++.+-
T Consensus 39 s~GmVGQ~~AR~Aagvi~kmi--~egk-------iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~Sl-- 107 (454)
T KOG2680|consen 39 SEGMVGQVKARKAAGVILKMI--REGK-------IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSL-- 107 (454)
T ss_pred cccchhhHHHHHHhHHHHHHH--HcCc-------ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeee--
Confidence 467889988876654443321 2111 1137899999999999999999999996 79999999998653
Q ss_pred cccChhhHHHHHHHHH
Q psy2392 858 VGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a 873 (1165)
.-+....++..|+.+
T Consensus 108 -EmsKTEAltQAfRks 122 (454)
T KOG2680|consen 108 -EMSKTEALTQAFRKS 122 (454)
T ss_pred -cccHHHHHHHHHHHh
Confidence 111123456666554
No 418
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=1.6e-05 Score=92.02 Aligned_cols=93 Identities=13% Similarity=0.231 Sum_probs=66.5
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
+.|+|++.|.+...... .. ......|++||++|++... .|+.||+++|...
T Consensus 91 ~~I~id~iR~l~~~~~~-----------~p--~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~--- 141 (325)
T PRK08699 91 LQIKIDAVREIIDNVYL-----------TS--VRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP--- 141 (325)
T ss_pred CCcCHHHHHHHHHHHhh-----------Cc--ccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc---
Confidence 35778888876533221 00 0013569999999999876 7889999999631
Q ss_pred eeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1062 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
.+..||.+. .+|+.+.|.+.+||-+ +.|.+++.++..+.|.+
T Consensus 142 -------~~~~~Ilvt----h~~~~ll~ti~SRc~~-~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 -------PQVVFLLVS----HAADKVLPTIKSRCRK-MVLPAPSHEEALAYLRE 183 (325)
T ss_pred -------CCCEEEEEe----CChHhChHHHHHHhhh-hcCCCCCHHHHHHHHHh
Confidence 234455543 4788899999999987 58999999999988864
No 419
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.03 E-value=8.9e-06 Score=100.47 Aligned_cols=112 Identities=16% Similarity=0.238 Sum_probs=75.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeecc--CceEEEEecCCCCCCCC----CCCch
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIK--TDHILFIASGAFHLAKP----SDLIP 1089 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~--t~~ilfI~~gaf~~~~p----~dl~p 1089 (1165)
++||+|+||+-.+... +|..||..+|.+.|+. +-|.-. -.+.++|++ .+| ..|-+
T Consensus 93 h~GvL~lDe~n~~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat-----~~~~~~~~~L~~ 154 (584)
T PRK13406 93 DGGVLVLAMAERLEPG-------------TAARLAAALDTGEVRLERDGLALRLPARFGLVAL-----DEGAEEDERAPA 154 (584)
T ss_pred cCCEEEecCcccCCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec-----CCChhcccCCCH
Confidence 7899999999888776 8999999998776655 222111 123445553 222 23667
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1090 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1090 el~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.|+-||.+.|.+..++..+...-...+. -+...++.+. ++.++++.+++|+.+|...
T Consensus 155 ~lLDRf~l~v~v~~~~~~~~~~~~~~~~--~I~~AR~rl~----~v~v~~~~l~~i~~~~~~~ 211 (584)
T PRK13406 155 ALADRLAFHLDLDGLALRDAREIPIDAD--DIAAARARLP----AVGPPPEAIAALCAAAAAL 211 (584)
T ss_pred HhHhheEEEEEcCCCChHHhcccCCCHH--HHHHHHHHHc----cCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999887753211111 2222333342 4578999999999988865
No 420
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.00 E-value=5e-05 Score=94.30 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=75.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee-ceeecCc--eEEEEEeCC-----cccCCC----
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YGIIKTD--HILFIASGA-----FHLAKP---- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~-~~~~~t~--~ilfI~~ga-----f~~~~p---- 486 (1165)
.+||+.|||+||+... .+..|...||..+++.. -|...|- .+-++||.+ |...+|
T Consensus 383 D~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en 449 (682)
T COG1241 383 DGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAEN 449 (682)
T ss_pred cCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHh
Confidence 5899999999999755 34478889998888764 4422222 233455532 333332
Q ss_pred CCCchhhhCCCCeeEec-CCCCHHHHHHHHh----hh--------------------hHhHHHHHHHHHhhcCCeeEeCH
Q psy2392 487 SDLIPELQGRFPIRVEL-DSLSISDFTRIMT----ST--------------------NVCLTKQYEALLATEGIKIEFVD 541 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~-~~L~~~~l~~Il~----~~--------------------~~~l~~~~~~ll~~~~i~l~~~~ 541 (1165)
-+|.|.|++|||+++.+ +.++++.-..|.+ .- ...+++.|.... ...+...+++
T Consensus 450 I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YA-R~~v~P~lt~ 528 (682)
T COG1241 450 INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYA-RKNVTPVLTE 528 (682)
T ss_pred cCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHH-hccCCcccCH
Confidence 24889999999976554 4444443333332 11 022344444433 3346678999
Q ss_pred HHHHHHHHHHHhc
Q psy2392 542 DGIQRLAEIAYCI 554 (1165)
Q Consensus 542 ~a~~~la~~a~~~ 554 (1165)
+|.+.|.+.-.+.
T Consensus 529 ea~e~l~~~Yv~~ 541 (682)
T COG1241 529 EAREELEDYYVEM 541 (682)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
No 421
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.00 E-value=2.6e-05 Score=93.63 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=73.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeecc--CceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK--TDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~--t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++||||||.+... +|..|+..++...+.. .|.-. .-++-+|++..-.. ..+..|.+.|
T Consensus 233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~-~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l 298 (441)
T PRK10365 233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQR-VGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDL 298 (441)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEe-CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHH
Confidence 6899999999999886 8999999998765432 22111 12345666643211 1234566777
Q ss_pred hccCC-eEEEcCCCCHH--HHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~~--~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.-|+. +.+.++||-+. |+..+.. ..+.++..-.... ...|+++|++.|.......
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~----~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg 356 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAG----HFLQRFAERNRKA--VKGFTPQAMDLLIHYDWPG 356 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHH----HHHHHHHHHhCCC--CCCcCHHHHHHHHhCCCCC
Confidence 77764 66788898753 7766666 4555544322221 1358999999998766544
No 422
>KOG1514|consensus
Probab=97.98 E-value=7.9e-05 Score=90.83 Aligned_cols=119 Identities=20% Similarity=0.368 Sum_probs=78.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc-hhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~-pel~~R~ 497 (1165)
...||+|||.|-+++..|+ |.+.|+.+ .....+..++|+-++ ++.-|..+. +-.-+|+
T Consensus 508 ~~~VvLiDElD~Lvtr~Qd----------VlYn~fdW----------pt~~~sKLvvi~IaN-TmdlPEr~l~nrvsSRl 566 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQD----------VLYNIFDW----------PTLKNSKLVVIAIAN-TMDLPERLLMNRVSSRL 566 (767)
T ss_pred CCEEEEeccHHHHhcccHH----------HHHHHhcC----------CcCCCCceEEEEecc-cccCHHHHhccchhhhc
Confidence 5789999999999998665 43333321 112233445555432 222232211 1223565
Q ss_pred C-eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~-~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
. -++.|.|++..+|.+|+. .+| .|+ -.|..+|++.+|+.-+.+ .++||+...+++++.|-
T Consensus 567 g~tRi~F~pYth~qLq~Ii~----------~RL---~~~-~~f~~~aielvarkVAav-----SGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIIS----------ARL---KGL-DAFENKAIELVARKVAAV-----SGDARRALDICRRAAEI 627 (767)
T ss_pred cceeeecCCCCHHHHHHHHH----------Hhh---cch-hhcchhHHHHHHHHHHhc-----cccHHHHHHHHHHHHHH
Confidence 5 468999999999999994 111 233 367899999999988775 68899999999999864
Q ss_pred h
Q psy2392 577 V 577 (1165)
Q Consensus 577 ~ 577 (1165)
.
T Consensus 628 a 628 (767)
T KOG1514|consen 628 A 628 (767)
T ss_pred h
Confidence 3
No 423
>PF13173 AAA_14: AAA domain
Probab=97.97 E-value=1.5e-05 Score=79.57 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~ 253 (1165)
..++++||.|||||++++.+++.+. ...+.+++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCC
Confidence 5789999999999999999998885 6777777765
No 424
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.95 E-value=4.1e-06 Score=84.76 Aligned_cols=66 Identities=27% Similarity=0.532 Sum_probs=40.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCC---CCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA---KPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~---~p~dl~pel~g 1093 (1165)
.+|.+||++||.+... .|..|+..++... ..++-+|++...... ....|.++|..
T Consensus 69 ~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~---------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~ 126 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE---------RSNVRLIASSSQDLEELVEEGRFSPDLYY 126 (138)
T ss_dssp TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT---------TTTSEEEEEECC-CCCHHHHSTHHHHHHH
T ss_pred CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC---------CCCeEEEEEeCCCHHHHhhccchhHHHHH
Confidence 6799999999999887 8899998887421 122334444332221 12357788888
Q ss_pred cCC-eEEEcCCC
Q psy2392 1094 RFP-IRVELDSL 1104 (1165)
Q Consensus 1094 R~~-i~v~l~~l 1104 (1165)
||. +.+.++||
T Consensus 127 ~l~~~~i~lPpL 138 (138)
T PF14532_consen 127 RLSQLEIHLPPL 138 (138)
T ss_dssp HCSTCEEEE---
T ss_pred HhCCCEEeCCCC
Confidence 876 66677665
No 425
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.93 E-value=8.3e-06 Score=82.52 Aligned_cols=56 Identities=30% Similarity=0.534 Sum_probs=37.5
Q ss_pred ecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC---CCceEEeccc
Q psy2392 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATK 253 (1165)
Q Consensus 186 iGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~s~ 253 (1165)
+|...+.+.+...+... . .....++++|+|||||+++|+.|....+ .+|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~----a--------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL----A--------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS 59 (138)
T ss_dssp --SCHHHHHHHHHHHHH----H--------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC
T ss_pred CCCCHHHHHHHHHHHHH----h--------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh
Confidence 47777777777766542 0 0136899999999999999999998774 3555555543
No 426
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.93 E-value=4.7e-06 Score=96.75 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=73.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecC---ceEEEEEeCCcc-----cCCC----
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT---DHILFIASGAFH-----LAKP---- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t---~~ilfI~~gaf~-----~~~p---- 486 (1165)
..||++|||+||+... .+..|+..||.++++..-+.+.+ .+.-++|+.+-. ..++
T Consensus 121 d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 121 DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 6899999999999764 34488999998887764322211 133456663322 1111
Q ss_pred CCCchhhhCCCCeeEec-CCCCHHHHHHH----Hhhh------------------hHhHHHHHHHHHhhcCCeeEeCHHH
Q psy2392 487 SDLIPELQGRFPIRVEL-DSLSISDFTRI----MTST------------------NVCLTKQYEALLATEGIKIEFVDDG 543 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~-~~L~~~~l~~I----l~~~------------------~~~l~~~~~~ll~~~~i~l~~~~~a 543 (1165)
-.+.+.|++|||+++.+ ++.+.+.=..| +... ...+++.|.... .+.+...++++|
T Consensus 188 i~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ya-r~~~~P~ls~ea 266 (331)
T PF00493_consen 188 INLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYA-RQNIHPVLSEEA 266 (331)
T ss_dssp T-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHH-HHHC--EE-HHC
T ss_pred cccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHH-HhhcccccCHHH
Confidence 14778999999987665 55553332222 2211 112233444433 235677999999
Q ss_pred HHHHHHHHHhccccC------CccCcchhHHHHHH
Q psy2392 544 IQRLAEIAYCINERT------ENIGARRLYTAMEK 572 (1165)
Q Consensus 544 ~~~la~~a~~~~~~~------~~~GAR~l~~~ie~ 572 (1165)
.+.|.+.....-... -.+.+|.|..++.-
T Consensus 267 ~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRL 301 (331)
T PF00493_consen 267 KELIINYYVELRKESKSNNKSIPITIRQLESLIRL 301 (331)
T ss_dssp HHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHH
T ss_pred HHHHHHHHHHhcccccccccccccchhhHHHHHHH
Confidence 998888665432211 23557777777643
No 427
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.92 E-value=2.7e-05 Score=77.29 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.....|+..|.+.+.||.-|++.+..++...+... .+ ..|-.+.|.||||||||++++.||+.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~---~p----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP---NP----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC---CC----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999999998763221 11 224678899999999999999999996
No 428
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=5.6e-05 Score=85.63 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=58.5
Q ss_pred eeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee
Q psy2392 385 KIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK 464 (1165)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~ 464 (1165)
.+++.+++.+..+..-.-.. ..+.|++||++|+++.. .++.||+.+|-
T Consensus 74 ~I~idqiR~l~~~~~~~p~e-------------~~~kv~ii~~ad~mt~~-------------AaNaLLK~LEE------ 121 (290)
T PRK05917 74 LHSIETPRAIKKQIWIHPYE-------------SPYKIYIIHEADRMTLD-------------AISAFLKVLED------ 121 (290)
T ss_pred cCcHHHHHHHHHHHhhCccC-------------CCceEEEEechhhcCHH-------------HHHHHHHHhhc------
Confidence 35677776655443322111 25679999999999977 66799999996
Q ss_pred ceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCC
Q psy2392 465 YGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSL 506 (1165)
Q Consensus 465 ~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L 506 (1165)
...+++||..+ ++|+.+.|.++||+.. +.|.++
T Consensus 122 ----Pp~~~~fiL~~----~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 122 ----PPQHGVIILTS----AKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred ----CCCCeEEEEEe----CChhhCcHHHHhcceE-EEccch
Confidence 35566777653 5788999999999976 478875
No 429
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=7.7e-05 Score=84.74 Aligned_cols=90 Identities=13% Similarity=0.272 Sum_probs=63.9
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
..|++.+.+.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 82 ~~I~idqIR~l~~~~~~~p~~-------------~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE----- 130 (290)
T PRK07276 82 QVIKTDTIRELVKNFSQSGYE-------------GKQQVFIIKDADKMHVN-------------AANSLLKVIEE----- 130 (290)
T ss_pred CcCCHHHHHHHHHHHhhCccc-------------CCcEEEEeehhhhcCHH-------------HHHHHHHHhcC-----
Confidence 346667776655443321111 25679999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHH
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIM 515 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il 515 (1165)
...+.+||... ++|+.+.|.++||+-+ |.|.+ +.+++.++|
T Consensus 131 -----Pp~~t~~iL~t----~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L 171 (290)
T PRK07276 131 -----PQSEIYIFLLT----NDENKVLPTIKSRTQI-FHFPK-NEAYLIQLL 171 (290)
T ss_pred -----CCCCeEEEEEE----CChhhCchHHHHccee-eeCCC-cHHHHHHHH
Confidence 34556666652 5789999999999976 58876 777777766
No 430
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.89 E-value=0.00028 Score=76.67 Aligned_cols=61 Identities=18% Similarity=0.397 Sum_probs=46.2
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
.++|-+..++.+.+..... -.|+ | ..|+||||.-|+|||+|+|++-.++ +..++.++..++
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F--~~G~-----p---ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQF--AEGL-----P---ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred HHhCchHHHHHHHHHHHHH--HcCC-----c---ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 7789999998888766543 1121 1 2699999999999999999999888 455666666554
No 431
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.87 E-value=9.5e-05 Score=91.56 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=92.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ecee--ecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~--~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
.+||+||||+-.+.+. +|..||..||.+.|+. +.|. ..-.+.++|++-. ....-..+.+.|+-
T Consensus 93 h~GvL~lDe~n~~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~~~~~~L~~~lLD 158 (584)
T PRK13406 93 DGGVLVLAMAERLEPG-------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GAEEDERAPAALAD 158 (584)
T ss_pred cCCEEEecCcccCCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-ChhcccCCCHHhHh
Confidence 5899999999988766 7779999998776655 2221 1123445566410 00011237788999
Q ss_pred CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCcc-CcchhHHHHHHHH
Q psy2392 496 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI-GARRLYTAMEKLL 574 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~-GAR~l~~~ie~~l 574 (1165)
||.+.|.+..++..+...-...+ . -+...++.+ . ++.++++.++++++.+..+ ++ |.|....++.-.-
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~-~-~I~~AR~rl--~--~v~v~~~~l~~i~~~~~~~-----gv~S~Ra~i~llraAR 227 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDA-D-DIAAARARL--P--AVGPPPEAIAALCAAAAAL-----GIASLRAPLLALRAAR 227 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCH-H-HHHHHHHHH--c--cCCCCHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHH
Confidence 99999999999988765321111 1 122223333 2 4578999999999988764 44 6687777665432
Q ss_pred HHhhcccCCCeeEEccccccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
.-... .+. -.|+.+.|++.+
T Consensus 228 a~AaL--~Gr-~~V~~~dv~~Aa 247 (584)
T PRK13406 228 AAAAL--AGR-TAVEEEDLALAA 247 (584)
T ss_pred HHHHH--cCC-CCCCHHHHHHHH
Confidence 22211 122 245666665544
No 432
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.85 E-value=0.00018 Score=77.71 Aligned_cols=103 Identities=21% Similarity=0.383 Sum_probs=52.6
Q ss_pred CCeeeehhhhhhh-ccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC--CCCCCCchhhhcc
Q psy2392 1018 NGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL--AKPSDLIPELQGR 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~-~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~--~~p~dl~pel~gR 1094 (1165)
..||+|||+|.+. ...+ ....-..|..+++. .....|+.+|.+|+... ..-.+-.+++.+|
T Consensus 119 ~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~--------~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDS--------LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp CEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH------------TTEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred cEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhh--------ccccCCceEEEECCchHHHHHhhcccCccccc
Confidence 3799999999999 2211 12234455555542 22345666666665321 0111233568899
Q ss_pred CCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1095 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.. +.+++|+.++..+.+++ .+... +++.++++.++.|....
T Consensus 183 ~~~-~~l~~l~~~e~~~~~~~-----------~~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 183 FSH-IELKPLSKEEAREFLKE-----------LFKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp --E-EEE----HHHHHHHHHH-----------HHHCC-------HHHHHHHHHHH
T ss_pred cce-EEEeeCCHHHHHHHHHH-----------HHHHh-hcccCCHHHHHHHHHHh
Confidence 998 89999999999999982 23322 33356899998887643
No 433
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.79 E-value=0.00015 Score=78.33 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=50.7
Q ss_pred ceEEEEecchhhh-ccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-C-CCCCCchhhhCC
Q psy2392 420 NGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-A-KPSDLIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~-~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~-~p~~l~pel~~R 496 (1165)
..||+|||++.+. .... .......|..+++.. ....|+.+|.+|+... . .-..-.+.+.+|
T Consensus 119 ~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~~--------~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDSL--------LSQQNVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp CEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH------------TTEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred cEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhhc--------cccCCceEEEECCchHHHHHhhcccCccccc
Confidence 4799999999998 2211 122333455555431 1234555555543211 0 111233557899
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
+.. +.+++++.++..+++.+ .+... +++.++++.++.+....
T Consensus 183 ~~~-~~l~~l~~~e~~~~~~~-----------~~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 183 FSH-IELKPLSKEEAREFLKE-----------LFKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp --E-EEE----HHHHHHHHHH-----------HHHCC-------HHHHHHHHHHH
T ss_pred cce-EEEeeCCHHHHHHHHHH-----------HHHHh-hcccCCHHHHHHHHHHh
Confidence 998 89999999999998852 12222 33356888888887765
No 434
>PF13173 AAA_14: AAA domain
Probab=97.77 E-value=4.5e-05 Score=76.17 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=29.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se 851 (1165)
+.++++||.||||||+++.+++.+. .+++.+++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCC
Confidence 5689999999999999999998875 6666666654
No 435
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00034 Score=80.10 Aligned_cols=70 Identities=14% Similarity=0.312 Sum_probs=56.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .++.||..+|. ..++++||... ++|+.+.|.+++|+.
T Consensus 90 ~~KvvII~~~e~m~~~-------------a~NaLLK~LEE----------Pp~~t~~il~~----~~~~kll~TI~SRc~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-------------LLNALLKTIEE----------PPKDTYFLLTT----KNINKVLPTIVSRCQ 142 (299)
T ss_pred CceEEEEecccccCHH-------------HHHHHHHHhhC----------CCCCeEEEEEe----CChHhChHHHHhCeE
Confidence 5779999999998755 56699999996 34556666542 367889999999998
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
+ |+|.+++.+++.+.|.
T Consensus 143 ~-~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 143 V-FNVKEPDQQKILAKLL 159 (299)
T ss_pred E-EECCCCCHHHHHHHHH
Confidence 7 6999999999988774
No 436
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.71 E-value=2.5e-05 Score=90.66 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=64.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeee---ccCceEEEEec-----CCCCCCCC---
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI---IKTDHILFIAS-----GAFHLAKP--- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~---~~t~~ilfI~~-----gaf~~~~p--- 1084 (1165)
..||++|||+||+... .+..|+..||..+++. |-|. +.+. ..++|+ |.|...++
T Consensus 121 d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar-~svlaa~NP~~g~~~~~~~~~~ 186 (331)
T PF00493_consen 121 DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNAR-CSVLAAANPKFGRYDPNKSLSE 186 (331)
T ss_dssp TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE----EEEEEE--TT--S-TTS-CGC
T ss_pred cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccch-hhhHHHHhhhhhhcchhhhhHH
Confidence 6799999999999775 6678999999988865 3332 2222 345555 33322222
Q ss_pred -CCCchhhhccCCeEEEc-CCCCHHHHHHHHh----h------------------hHHHhHHHHHHHHhhcCCceEeCHH
Q psy2392 1085 -SDLIPELQGRFPIRVEL-DSLSISDFTRIMT----S------------------TNVCLTKQYEALLATEGIKIEFVDD 1140 (1165)
Q Consensus 1085 -~dl~pel~gR~~i~v~l-~~l~~~~l~~il~----~------------------~~~~l~~q~~~l~~~egv~l~~~~~ 1140 (1165)
-++-+.|++||++.+.+ ++.+++.=.+|.+ . ....+++.|-...+ +.+...|+++
T Consensus 187 ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar-~~~~P~ls~e 265 (331)
T PF00493_consen 187 NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYAR-QNIHPVLSEE 265 (331)
T ss_dssp CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHH-HHC--EE-HH
T ss_pred hcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHH-hhcccccCHH
Confidence 24778999999988765 5555332222222 1 12334566666655 3566799999
Q ss_pred HHHHHHHH
Q psy2392 1141 GIQRLAEI 1148 (1165)
Q Consensus 1141 ai~~ia~~ 1148 (1165)
|.+.|.+.
T Consensus 266 a~~~I~~~ 273 (331)
T PF00493_consen 266 AKELIINY 273 (331)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888663
No 437
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00035 Score=79.99 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=57.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+||++|++... .|+.||+.+|...- +.+||... ++|+.+.|.+.+||-
T Consensus 90 ~~KvvII~~~e~m~~~-------------a~NaLLK~LEEPp~----------~t~~il~~----~~~~kll~TI~SRc~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-------------LLNALLKTIEEPPK----------DTYFLLTT----KNINKVLPTIVSRCQ 142 (299)
T ss_pred CceEEEEecccccCHH-------------HHHHHHHHhhCCCC----------CeEEEEEe----CChHhChHHHHhCeE
Confidence 3569999999999765 77899999997433 33555432 367899999999998
Q ss_pred eEEEcCCCCHHHHHHHHhh
Q psy2392 1097 IRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~ 1115 (1165)
+ |+|.+++.+++.+.|.+
T Consensus 143 ~-~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 V-FNVKEPDQQKILAKLLS 160 (299)
T ss_pred E-EECCCCCHHHHHHHHHH
Confidence 7 69999999999988884
No 438
>KOG2170|consensus
Probab=97.68 E-value=0.0011 Score=74.27 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+...|+..|.+.+.||.-|++.+..++..+|.-. .+..|-.+-|.|+|||||.+.++.||+.+
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWANP-------NPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-------CCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 33567889999999999999999999998764221 11235678899999999999999999988
No 439
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00027 Score=80.31 Aligned_cols=68 Identities=13% Similarity=0.343 Sum_probs=54.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .|.+||... ++|+.+.|.+.+||-+
T Consensus 105 ~kV~II~~ad~m~~~-------------AaNaLLKtLEEPp----------~~t~~iL~t----~~~~~lLpTI~SRcq~ 157 (290)
T PRK07276 105 QQVFIIKDADKMHVN-------------AANSLLKVIEEPQ----------SEIYIFLLT----NDENKVLPTIKSRTQI 157 (290)
T ss_pred cEEEEeehhhhcCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChhhCchHHHHccee
Confidence 459999999999876 6789999999743 333454443 4789999999999986
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
+.|.+ ..+++.++|.
T Consensus 158 -i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 158 -FHFPK-NEAYLIQLLE 172 (290)
T ss_pred -eeCCC-cHHHHHHHHH
Confidence 58977 7888888886
No 440
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.66 E-value=0.0012 Score=74.74 Aligned_cols=58 Identities=29% Similarity=0.291 Sum_probs=40.1
Q ss_pred HHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 177 IVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 177 l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+...-...-||-..|.+.+...-..- ..+.+ ....++|++|+||.|||++++..++..
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll------~~P~~--~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELL------EYPKR--HRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHH------hCCcc--cCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 33344568899999987766543211 11111 123689999999999999999999876
No 441
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.62 E-value=0.00093 Score=86.50 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
..+|+-||+.+|||+...-+|+..|..|++++-.+.++
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTd 926 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTD 926 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccch
Confidence 57899999999999999999999999999999888654
No 442
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00038 Score=78.99 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=47.3
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .|+.||+++|... .+.+||... ++|+.+.|.+++||-+
T Consensus 96 ~kv~ii~~ad~mt~~-------------AaNaLLK~LEEPp----------~~~~fiL~~----~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 96 YKIYIIHEADRMTLD-------------AISAFLKVLEDPP----------QHGVIILTS----AKPQRLPPTIRSRSLS 148 (290)
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhhcCC----------CCeEEEEEe----CChhhCcHHHHhcceE
Confidence 359999999999987 7889999999743 344555443 4788999999999886
Q ss_pred EEEcCCCC
Q psy2392 1098 RVELDSLS 1105 (1165)
Q Consensus 1098 ~v~l~~l~ 1105 (1165)
+.|.++.
T Consensus 149 -~~~~~~~ 155 (290)
T PRK05917 149 -IHIPMEE 155 (290)
T ss_pred -EEccchh
Confidence 5788653
No 443
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.60 E-value=0.00037 Score=85.34 Aligned_cols=123 Identities=13% Similarity=0.197 Sum_probs=67.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeC--CcccCCC-C--------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASG--AFHLAKP-S-------- 487 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~g--af~~~~p-~-------- 487 (1165)
...||+|+|+-.+... +. ...+..|+..+..+.. ..++||.+- .....+. .
T Consensus 132 ~~kvILVEDlPN~~~~-------~~--~~f~~~L~~~l~~~~~---------~PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHR-------DT--SRFREALRQYLRSSRC---------LPLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred CceEEEeeccccccch-------hH--HHHHHHHHHHHHcCCC---------CCEEEEEecccccCCCCcccccchhhhh
Confidence 4679999998754322 11 3456666666653211 156677772 2221111 1
Q ss_pred CCchhhhCCCC-eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCC-eeEeCHHHHHHHHHHHHhccccCCccCcch
Q psy2392 488 DLIPELQGRFP-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARR 565 (1165)
Q Consensus 488 ~l~pel~~R~~-~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i-~l~~~~~a~~~la~~a~~~~~~~~~~GAR~ 565 (1165)
-|.|+++.... -+|.|+|....-+.+.|+ .+..+....+ .|. ...-..+.++.|++.+ +++-|.
T Consensus 194 L~~~~il~~~~i~~I~FNpIa~T~mkKaL~----rI~~~E~~~~--~~~~~~p~~~~~l~~I~~~s--------~GDIRs 259 (519)
T PF03215_consen 194 LFPKEILNHPGITRIKFNPIAPTFMKKALK----RILKKEARSS--SGKNKVPDKQSVLDSIAESS--------NGDIRS 259 (519)
T ss_pred ccCHHHHhCCCceEEEecCCCHHHHHHHHH----HHHHHHhhhh--cCCccCCChHHHHHHHHHhc--------CchHHH
Confidence 25678875322 347999999998888884 3333221111 122 1121244588887765 566676
Q ss_pred hHHHHHHH
Q psy2392 566 LYTAMEKL 573 (1165)
Q Consensus 566 l~~~ie~~ 573 (1165)
.-+.++-.
T Consensus 260 AIn~LQf~ 267 (519)
T PF03215_consen 260 AINNLQFW 267 (519)
T ss_pred HHHHHHHH
Confidence 66666544
No 444
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00048 Score=81.26 Aligned_cols=95 Identities=18% Similarity=0.347 Sum_probs=61.8
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---CchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~gR~ 1095 (1165)
-+++||.|+.++... +.|..+.-++-- ......-+.++| . .-|.. +.|-|.+||
T Consensus 177 dlllIDDiq~l~gk~-----------~~qeefFh~FN~--------l~~~~kqIvlts-d---r~P~~l~~~~~rL~SR~ 233 (408)
T COG0593 177 DLLLIDDIQFLAGKE-----------RTQEEFFHTFNA--------LLENGKQIVLTS-D---RPPKELNGLEDRLRSRL 233 (408)
T ss_pred CeeeechHhHhcCCh-----------hHHHHHHHHHHH--------HHhcCCEEEEEc-C---CCchhhccccHHHHHHH
Confidence 489999999998762 246655544321 011111112222 1 13443 558999996
Q ss_pred C--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 P--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
. +.+++.|++.+....||. ...+..|+ .++++++.+||..-
T Consensus 234 ~~Gl~~~I~~Pd~e~r~aiL~-----------kka~~~~~--~i~~ev~~~la~~~ 276 (408)
T COG0593 234 EWGLVVEIEPPDDETRLAILR-----------KKAEDRGI--EIPDEVLEFLAKRL 276 (408)
T ss_pred hceeEEeeCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHh
Confidence 4 788999999999999999 23444555 78899999998753
No 445
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00025 Score=88.28 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=77.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeeccCce--EEEEec-----CCCCCCCC----
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIAS-----GAFHLAKP---- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~t~~--ilfI~~-----gaf~~~~p---- 1084 (1165)
.+||..|||+||+... .+..|...||..+|+. |-|...|=| ..++|| |-|...+|
T Consensus 383 D~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en 449 (682)
T COG1241 383 DGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAEN 449 (682)
T ss_pred cCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHh
Confidence 6899999999999765 6678999999988876 555333332 223333 44554444
Q ss_pred CCCchhhhccCCeEEEcC-CCCHHHHHHHHhh----h--------------------HHHhHHHHHHHHhhcCCceEeCH
Q psy2392 1085 SDLIPELQGRFPIRVELD-SLSISDFTRIMTS----T--------------------NVCLTKQYEALLATEGIKIEFVD 1139 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~-~l~~~~l~~il~~----~--------------------~~~l~~q~~~l~~~egv~l~~~~ 1139 (1165)
-+|-|.|++||.+.+-+. .++++.-..|.+. - ...+++.|-...++. +...+++
T Consensus 450 I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~-v~P~lt~ 528 (682)
T COG1241 450 INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKN-VTPVLTE 528 (682)
T ss_pred cCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhcc-CCcccCH
Confidence 368899999999776554 3444333333221 1 123466666665553 6678999
Q ss_pred HHHHHHHHH
Q psy2392 1140 DGIQRLAEI 1148 (1165)
Q Consensus 1140 ~ai~~ia~~ 1148 (1165)
+|.+.|.+.
T Consensus 529 ea~e~l~~~ 537 (682)
T COG1241 529 EAREELEDY 537 (682)
T ss_pred HHHHHHHHH
Confidence 999988764
No 446
>PRK12377 putative replication protein; Provisional
Probab=97.54 E-value=0.00015 Score=80.92 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++|+||||||||+||.++|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999998
No 447
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0005 Score=76.63 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=51.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. ..+.||..+|. ...+.+||..+ .+|..+.|.++||+.
T Consensus 88 ~~KV~II~~ae~m~~~-------------AaNaLLK~LEE----------Pp~~t~fiLit----~~~~~lLpTI~SRCq 140 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQ-------------SANSLLKLIEE----------PPKNTYGIFTT----RNENNILNTILSRCV 140 (261)
T ss_pred CCEEEEeccHhhhCHH-------------HHHHHHHhhcC----------CCCCeEEEEEE----CChHhCchHhhhhee
Confidence 4789999999999977 55699999996 35566777663 578999999999987
Q ss_pred eeEecCCCCHHHH
Q psy2392 499 IRVELDSLSISDF 511 (1165)
Q Consensus 499 ~~v~~~~L~~~~l 511 (1165)
. +.|.++.+...
T Consensus 141 ~-~~~~~~~~~~~ 152 (261)
T PRK05818 141 Q-YVVLSKEKKVP 152 (261)
T ss_pred e-eecCChhhhcc
Confidence 6 46877744443
No 448
>KOG0480|consensus
Probab=97.51 E-value=0.0017 Score=78.51 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=48.8
Q ss_pred HHHHHHHhcccEecchhhHHHHHHHHHhhhhh-hcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 174 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRR-QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 174 ~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r-~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
...|..-|--.|.|.+.+|.-|.-.+.....+ .+=.-++|.. -|++++|-||+|||-+-++.+..+...
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGD---inv~iVGDPgt~KSQfLk~v~~fsPR~ 405 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGD---INVCIVGDPGTGKSQFLKAVCAFSPRS 405 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCC---ceEEEeCCCCccHHHHHHHHhccCCcc
Confidence 34556666778999999998888777644222 1211122222 599999999999999999999888543
No 449
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.49 E-value=0.00015 Score=87.89 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=49.1
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEeccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATK 253 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld~s~ 253 (1165)
+++|+++++..|...+... ..++.. +...++|+||||+|||+||++||+.+ ..|++.+...+
T Consensus 77 d~yGlee~ieriv~~l~~A--a~gl~~------~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~ 139 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHA--AQGLEE------KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANG 139 (644)
T ss_pred cccCcHHHHHHHHHHHHHH--HHhcCC------CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCC
Confidence 6899999999999988655 333432 23689999999999999999999999 46777776533
No 450
>KOG2227|consensus
Probab=97.49 E-value=0.003 Score=74.43 Aligned_cols=97 Identities=23% Similarity=0.338 Sum_probs=64.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC----Cchhhhc
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD----LIPELQG 1093 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d----l~pel~g 1093 (1165)
+=++++||+|.+.+. -|+.|..+.| |-...+.+++.|+-. +.-| +.|-|..
T Consensus 257 ~~llVlDEmD~L~tr-------------~~~vLy~lFe-------wp~lp~sr~iLiGiA-----NslDlTdR~LprL~~ 311 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITR-------------SQTVLYTLFE-------WPKLPNSRIILIGIA-----NSLDLTDRFLPRLNL 311 (529)
T ss_pred eEEEEechhhHHhhc-------------ccceeeeehh-------cccCCcceeeeeeeh-----hhhhHHHHHhhhhhh
Confidence 348999999999976 3456777776 445566776665542 3334 5566665
Q ss_pred c---CCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1094 R---FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1094 R---~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
| -|-++.|+|+|.+++++||+ .-|.++-.. .|-+-|++.+|+....
T Consensus 312 ~~~~~P~~l~F~PYTk~qI~~Il~-----------~rl~~~~t~-~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 312 DLTIKPKLLVFPPYTKDQIVEILQ-----------QRLSEESTS-IFLNAAIELCARKVAA 360 (529)
T ss_pred ccCCCCceeeecCCCHHHHHHHHH-----------HHHhccccc-ccchHHHHHHHHHhcc
Confidence 4 46688999999999999999 233333332 3445677777765543
No 451
>KOG0478|consensus
Probab=97.45 E-value=0.00067 Score=82.54 Aligned_cols=122 Identities=25% Similarity=0.329 Sum_probs=72.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceeecCce--EEEEEeCCcc--cCCC-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIASGAFH--LAKP------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~~t~~--ilfI~~gaf~--~~~p------- 486 (1165)
.+||-.|||+||+..+ -+.-|+..||..+++. |-|.+.+=| .-+||+.+-. .-+|
T Consensus 526 D~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 526 DNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred CCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 5799999999999755 3337899999888776 455444432 3455553311 1111
Q ss_pred CCCchhhhCCCCee-EecCCCCHH-HHH---HHHh---h---------hhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHH
Q psy2392 487 SDLIPELQGRFPIR-VELDSLSIS-DFT---RIMT---S---------TNVCLTKQYEALLATEGIKIEFVDDGIQRLAE 549 (1165)
Q Consensus 487 ~~l~pel~~R~~~~-v~~~~L~~~-~l~---~Il~---~---------~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~ 549 (1165)
-++.|.|++||+.+ +.|++.++- |+. .|+. + -..++++-|.. .+.+.+.-..+++|.+.+..
T Consensus 593 I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~p~l~~ea~~~l~~ 671 (804)
T KOG0478|consen 593 INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIHPALSPEASQALIQ 671 (804)
T ss_pred cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH-HHhccCCccccHHHHHHHHH
Confidence 13889999999954 455666554 211 1110 0 01223333333 23456677888999999888
Q ss_pred HHHhc
Q psy2392 550 IAYCI 554 (1165)
Q Consensus 550 ~a~~~ 554 (1165)
...+.
T Consensus 672 ayvd~ 676 (804)
T KOG0478|consen 672 AYVDM 676 (804)
T ss_pred Hhhhh
Confidence 76654
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.43 E-value=0.00047 Score=68.22 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc--------CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS--------NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l--------~~~fi~l~~se 851 (1165)
.+.++++||||+|||++++.+++.+ ..+++.++++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 3678999999999999999999988 56667666655
No 453
>PRK12377 putative replication protein; Provisional
Probab=97.43 E-value=0.00021 Score=79.62 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=23.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+++|+||||||||+||.++++.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999998
No 454
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.40 E-value=0.0012 Score=74.76 Aligned_cols=53 Identities=28% Similarity=0.313 Sum_probs=36.6
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+.-+|...|.+.+...-... ...... ...++|++|+||.|||++++...+..
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll----~~P~~~----Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELL----EYPKRH----RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHH----hCCccc----CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 457788888877666443311 011111 24789999999999999999888765
No 455
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.39 E-value=0.00027 Score=85.88 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=49.2
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEAT 850 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~s 850 (1165)
++++|++++++.|...+... ..++... ...++|.||||+|||+||+.||+.+ ..|++.+.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~A--a~gl~~~------~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~ 138 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHA--AQGLEEK------KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKAN 138 (644)
T ss_pred hcccCcHHHHHHHHHHHHHH--HHhcCCC------CceEEEecCCCCCchHHHHHHHHHHHhCcceeecCC
Confidence 46889999999999988655 3333321 3579999999999999999999998 4677777663
No 456
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.38 E-value=0.00012 Score=82.49 Aligned_cols=86 Identities=22% Similarity=0.189 Sum_probs=65.0
Q ss_pred cccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhh
Q psy2392 1051 LPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 1130 (1165)
Q Consensus 1051 L~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~ 1130 (1165)
||.+|.++++. .+.+|+|+.| .++|+|++|+-++ +|++|+.+|+.++|+ +++. ... .+.
T Consensus 1 Lp~vE~G~i~L--IGATTENP~f------------~vn~ALlSR~~v~-~l~~L~~~di~~il~---ral~-~~~-~~~- 59 (300)
T PRK14700 1 MPYVESGKIIL--IGATTENPTY------------YLNDALVSRLFIL-RLKRLSLVATQKLIE---KALS-QDE-VLA- 59 (300)
T ss_pred CCCccCCcEEE--EeecCCCccc------------eecHhhhhhhhee-eecCCCHHHHHHHHH---HHHH-hhh-ccC-
Confidence 68888877765 6777777777 8999999999885 899999999999999 3332 211 122
Q ss_pred cCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1131 EGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1131 egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
..++.++|+|++.||..|-..-|.+.|
T Consensus 60 -~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 60 -KHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred -CcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 235689999999999988765555544
No 457
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.37 E-value=0.00057 Score=75.55 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=51.2
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHH------cCCCeEEEecC
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL------SNAPFIKIEAT 850 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~------l~~~fi~l~~s 850 (1165)
..|+.-|.-...+-..+.+.|..- -+.+ ...+||.||+|.||+.||+.+-+. +.-+|+.++|.
T Consensus 180 ~~lksgiatrnp~fnrmieqierv----a~rs-------r~p~ll~gptgagksflarriyelk~arhq~sg~fvevnca 248 (531)
T COG4650 180 DFLKSGIATRNPHFNRMIEQIERV----AIRS-------RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCA 248 (531)
T ss_pred HHHHhcccccChHHHHHHHHHHHH----Hhhc-------cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeee
Confidence 445555555555555555555421 1111 245999999999999999988754 36789999999
Q ss_pred CcccccccccChhhHHHHHHHHH
Q psy2392 851 KFTEVGYVGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 851 e~~~~GyvG~~~~~~l~~lf~~a 873 (1165)
.+... +....+|+..
T Consensus 249 tlrgd--------~amsalfghv 263 (531)
T COG4650 249 TLRGD--------TAMSALFGHV 263 (531)
T ss_pred eecCc--------hHHHHHHhhh
Confidence 86432 3466777654
No 458
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0027 Score=69.27 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=44.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC---CCeEEEec
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEA 849 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~ 849 (1165)
.+++|-+..++.+...-... -.|+. ..++||||.-|+|||+++|++-++++ ..++.++-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F--~~G~p--------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQF--AEGLP--------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred HHHhCchHHHHHHHHHHHHH--HcCCc--------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 57889999999988776543 12222 37999999999999999999999884 33444443
No 459
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.31 E-value=0.00057 Score=67.60 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh--------CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS--------NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l--------~~~~i~ld~s~ 253 (1165)
.+.++++||||+|||++++.+++.+ ..+++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 3789999999999999999999988 45566666654
No 460
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.00083 Score=71.75 Aligned_cols=89 Identities=21% Similarity=0.367 Sum_probs=68.4
Q ss_pred eeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee
Q psy2392 983 KIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK 1062 (1165)
Q Consensus 983 ~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k 1062 (1165)
.++|+++|+++..-.- ..+.+-++||++|++... .++.||+++|...
T Consensus 36 ~i~Vd~iReii~~~~~----------------~~~~~k~iI~~a~~l~~~-------------A~NaLLK~LEEPp---- 82 (206)
T PRK08485 36 EFKIEDAKEVIAEAYI----------------AESEEKIIVIAAPSYGIE-------------AQNALLKILEEPP---- 82 (206)
T ss_pred CCCHHHHHHHHHHHhh----------------CCCCcEEEEEchHhhCHH-------------HHHHHHHHhcCCC----
Confidence 5788888887754331 123455678999999887 7889999999744
Q ss_pred eeeccCceEEEEecCCCCCCCCCCCchhhhccCCe------------EEEcCCCCHHHHHHHHh
Q psy2392 1063 YGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI------------RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1063 ~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i------------~v~l~~l~~~~l~~il~ 1114 (1165)
.|++||... .+|..+.|.+++||.+ ...|++|+.++++..|+
T Consensus 83 ------~~~~fiL~t----~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~ 136 (206)
T PRK08485 83 ------KNICFIIVA----KSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLK 136 (206)
T ss_pred ------CCeEEEEEe----CChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHH
Confidence 445565553 4788999999999975 57899999999999887
No 461
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00036 Score=73.28 Aligned_cols=44 Identities=34% Similarity=0.594 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
..++++|||||||||+|+.|++.++.+++.+|.- +..+||...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l-~~~~~w~~~~ 45 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL-FWKPNWEGVP 45 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh-hcccCCcCCC
Confidence 3689999999999999999999999999999964 3356776554
No 462
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.0004 Score=72.91 Aligned_cols=45 Identities=33% Similarity=0.568 Sum_probs=37.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccCh
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDV 862 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~ 862 (1165)
..++++||||+||||+|+.|++.++.+++.+|.- +..+||...+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l-~~~~~w~~~~~ 46 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL-FWKPNWEGVPK 46 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh-hcccCCcCCCH
Confidence 3589999999999999999999999999998863 44567776553
No 463
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.22 E-value=0.00026 Score=69.35 Aligned_cols=31 Identities=35% Similarity=0.699 Sum_probs=27.4
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
+++.|||||||||+|+.||+.++.+++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999877666555
No 464
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.00035 Score=78.82 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++|+||||||||.||.+++..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 689999999999999999999876
No 465
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.21 E-value=0.00094 Score=74.36 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+++|+||||||||+|+.++|..+ +..++.++.++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 589999999999999999999998 44445454433
No 466
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00023 Score=69.71 Aligned_cols=39 Identities=33% Similarity=0.678 Sum_probs=30.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 221 ~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
+++.|||||||||+|+.||+.++.+++.+|. -+..++|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~-~~~~~~~~ 40 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD-LIREPGWI 40 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH-HHCCGTHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc-eEEecccc
Confidence 7899999999999999999999877665555 12444444
No 467
>KOG1514|consensus
Probab=97.18 E-value=0.0053 Score=75.47 Aligned_cols=102 Identities=20% Similarity=0.419 Sum_probs=61.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc-hhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~-pel~gR~ 1095 (1165)
...+|+|||.|-+++.++ .-|--+.+ |........++||-+. ++.=|..++ +-.-+|+
T Consensus 508 ~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd-------Wpt~~~sKLvvi~IaN-TmdlPEr~l~nrvsSRl 566 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQ-------------DVLYNIFD-------WPTLKNSKLVVIAIAN-TMDLPERLLMNRVSSRL 566 (767)
T ss_pred CCEEEEeccHHHHhcccH-------------HHHHHHhc-------CCcCCCCceEEEEecc-cccCHHHHhccchhhhc
Confidence 456999999999999843 33333322 3333344455555543 222232222 1233465
Q ss_pred C-eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1096 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1096 ~-i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
. -|+.|.|++.++|.+|+. .+| .|+ -.|..+|++.+|+.-+.+.
T Consensus 567 g~tRi~F~pYth~qLq~Ii~----------~RL---~~~-~~f~~~aielvarkVAavS 611 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIIS----------ARL---KGL-DAFENKAIELVARKVAAVS 611 (767)
T ss_pred cceeeecCCCCHHHHHHHHH----------Hhh---cch-hhcchhHHHHHHHHHHhcc
Confidence 4 367899999999999998 111 233 2578899998888666553
No 468
>KOG0478|consensus
Probab=97.17 E-value=0.002 Score=78.63 Aligned_cols=120 Identities=24% Similarity=0.307 Sum_probs=72.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeeccCce--EEEEecCCCCC--CCC-------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIASGAFHL--AKP------- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~t~~--ilfI~~gaf~~--~~p------- 1084 (1165)
.+||-.|||+||+..+ .+.-|+..||..+|+. |-|.+.+=| ..+||+.+=.. -+|
T Consensus 526 D~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 526 DNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred CCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 6799999999999766 4557999999988875 666555433 33455532111 111
Q ss_pred CCCchhhhccCCeEE-EcCCCCHHHHHHHHh-------h---------hHHHhHHHHHHHHhhcCCceEeCHHHHHHHHH
Q psy2392 1085 SDLIPELQGRFPIRV-ELDSLSISDFTRIMT-------S---------TNVCLTKQYEALLATEGIKIEFVDDGIQRLAE 1147 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v-~l~~l~~~~l~~il~-------~---------~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~ 1147 (1165)
-+|-|.|++||.++. -|++.++.-=.++.+ | -..++++-|...- .+.+.-..++||...+..
T Consensus 593 I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yA-rk~i~p~l~~ea~~~l~~ 671 (804)
T KOG0478|consen 593 INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYA-RKNIHPALSPEASQALIQ 671 (804)
T ss_pred cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHH-hccCCccccHHHHHHHHH
Confidence 247799999999754 456665541111111 1 1234455555443 345566778888877765
Q ss_pred HHh
Q psy2392 1148 IAY 1150 (1165)
Q Consensus 1148 ~a~ 1150 (1165)
.-+
T Consensus 672 ayv 674 (804)
T KOG0478|consen 672 AYV 674 (804)
T ss_pred Hhh
Confidence 433
No 469
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.17 E-value=0.0022 Score=71.07 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=50.9
Q ss_pred HHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHH------hCCCceEEec
Q psy2392 178 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL------SNAPFIKIEA 251 (1165)
Q Consensus 178 ~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~------l~~~~i~ld~ 251 (1165)
...|+..|.-...+-....+.|..--.+ ....+||.||+|.|||.||+.+-+. +.-+|+.++|
T Consensus 179 l~~lksgiatrnp~fnrmieqierva~r-----------sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevnc 247 (531)
T COG4650 179 LDFLKSGIATRNPHFNRMIEQIERVAIR-----------SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNC 247 (531)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHhh-----------ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEee
Confidence 3455556655555544444444321001 1267999999999999999988764 3689999999
Q ss_pred cccccccccccchhhHHHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDI 274 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~ 274 (1165)
..+.. ++..+.+|..
T Consensus 248 atlrg--------d~amsalfgh 262 (531)
T COG4650 248 ATLRG--------DTAMSALFGH 262 (531)
T ss_pred eeecC--------chHHHHHHhh
Confidence 98653 3445666655
No 470
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.00068 Score=71.38 Aligned_cols=43 Identities=33% Similarity=0.672 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
.++++||||+||||+|+.|++.++.+++.+|.-.+ .+||...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~-~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF-QPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe-ccccccCC
Confidence 58899999999999999999999999998887543 45666554
No 471
>PRK08116 hypothetical protein; Validated
Probab=97.09 E-value=0.0011 Score=75.00 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+++|+||||+|||.||.++|+.+ +.+++.++.++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 469999999999999999999987 45555555443
No 472
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.0003 Score=78.83 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++|+||||||||+||.+|+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 699999999999999999999876
No 473
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.06 E-value=0.11 Score=62.11 Aligned_cols=121 Identities=17% Similarity=0.291 Sum_probs=79.8
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCC--CCCCCCCCC--chhhhccC
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA--FHLAKPSDL--IPELQGRF 1095 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~ga--f~~~~p~dl--~pel~gR~ 1095 (1165)
+|+|||.+.+-+-+. +++|+-.=+.|+.+++...- | ...|+.||.+|+ |-...+..+ .|+|++|+
T Consensus 242 lI~lDE~e~l~kl~~-----~~~R~~~ye~lr~lidd~~~----G--~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL 310 (416)
T PF10923_consen 242 LILLDELENLYKLRN-----DQAREKNYEALRQLIDDIDQ----G--RAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRL 310 (416)
T ss_pred EEEEechHHHHhcCC-----hHHHHHHHHHHHHHHHHHhc----C--CCCceEEEEeeCHHHhhCccccccccHHHHHHH
Confidence 899999998876532 33455455678888874221 1 235677877775 332322222 35555554
Q ss_pred C--------------eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeec
Q psy2392 1096 P--------------IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVI 1161 (1165)
Q Consensus 1096 ~--------------i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~niga 1161 (1165)
. ..+.|+||+.++|+.++. ++..-|.... +....++++.++.+++.++. ++|+
T Consensus 311 ~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~----klr~i~a~~~---~~~~~v~d~~l~~~~~~~~~------r~G~ 377 (416)
T PF10923_consen 311 AEEFFADDGFDNLRAPVIRLQPLTPEELLELLE----KLRDIYAEAY---GYESRVDDEELKAFAQHVAG------RLGG 377 (416)
T ss_pred hccccccccccCccCceecCCCCCHHHHHHHHH----HHHHHHHhhC---CCCCCCCHHHHHHHHHHHHh------ccCc
Confidence 3 456899999999998888 6666565544 34467999999999998886 4666
Q ss_pred ccc
Q psy2392 1162 IYH 1164 (1165)
Q Consensus 1162 r~~ 1164 (1165)
.++
T Consensus 378 ~~~ 380 (416)
T PF10923_consen 378 DVF 380 (416)
T ss_pred ccc
Confidence 543
No 474
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.04 E-value=0.00057 Score=70.99 Aligned_cols=32 Identities=44% Similarity=0.573 Sum_probs=28.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++|+||||||||++|+.||+.++.+|+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 57899999999999999999999999887753
No 475
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.02 E-value=0.00056 Score=71.00 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|+||||||||++|+.||+.++.+++..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 479999999999999999999999988777544
No 476
>PRK07261 topology modulation protein; Provisional
Probab=96.99 E-value=0.0011 Score=69.89 Aligned_cols=46 Identities=30% Similarity=0.575 Sum_probs=36.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhh
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 864 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~ 864 (1165)
.++++||||+||||+|+.|++.++.+++.+|.-. ..+||...+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~-~~~~~~~~~~~~ 47 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH-FQPNWQERDDDD 47 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE-eccccccCCHHH
Confidence 4789999999999999999999999999888644 345676655333
No 477
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.99 E-value=0.0025 Score=72.15 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=49.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--eceeecCceEEEEEeCCcccCCCCCCchhhhCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--KYGIIKTDHILFIASGAFHLAKPSDLIPELQGR 496 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R 496 (1165)
+..|+|||++.--.+...+ .. ..-..|.+++|.+..-. +..-..-.++.|||+.+-...+ ..+.|-|++.
T Consensus 100 k~lv~fiDDlN~p~~d~yg---tq----~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr-~~is~R~~r~ 171 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYG---TQ----PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR-NPISPRFLRH 171 (272)
T ss_dssp SEEEEEEETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT---SHHHHHHTT
T ss_pred cEEEEEecccCCCCCCCCC---Cc----CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC-CCCChHHhhh
Confidence 3569999998866655443 11 12224456666543221 1223445678899885432222 2488899999
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|.+ +.+..++.+.+..|..
T Consensus 172 f~i-~~~~~p~~~sl~~If~ 190 (272)
T PF12775_consen 172 FNI-LNIPYPSDESLNTIFS 190 (272)
T ss_dssp EEE-EE----TCCHHHHHHH
T ss_pred eEE-EEecCCChHHHHHHHH
Confidence 987 4899999999999984
No 478
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0016 Score=67.06 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
...+.++||||+||||++..+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999999984
No 479
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.00093 Score=70.06 Aligned_cols=49 Identities=37% Similarity=0.589 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDI 274 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~ 274 (1165)
.++.|+|++|+||||++++||+.|+.+|+..|.- .+ ...+..+.++|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--Ie-----~~~g~sI~eIF~~ 51 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--IE-----KRTGMSIAEIFEE 51 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--HH-----HHHCcCHHHHHHH
Confidence 5899999999999999999999999999988852 12 1223447777766
No 480
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.96 E-value=0.066 Score=63.88 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=82.4
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCC--cccCCCC-----------
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA--FHLAKPS----------- 487 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~ga--f~~~~p~----------- 487 (1165)
=+|+|||.+.+.+-+. +.+++-.-+.|+.+++... .| ...++.|+.+|+ |-...+.
T Consensus 241 LlI~lDE~e~l~kl~~-----~~~R~~~ye~lr~lidd~~----~G--~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~R 309 (416)
T PF10923_consen 241 LLILLDELENLYKLRN-----DQAREKNYEALRQLIDDID----QG--RAPGLYFVFAGTPEFFEDGRRGVYSYEALAQR 309 (416)
T ss_pred eEEEEechHHHHhcCC-----hHHHHHHHHHHHHHHHHHh----cC--CCCceEEEEeeCHHHhhCccccccccHHHHHH
Confidence 3889999998875432 3445556667888887421 11 245777888875 2211111
Q ss_pred -----CCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccC
Q psy2392 488 -----DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIG 562 (1165)
Q Consensus 488 -----~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~G 562 (1165)
.-.+++.+-....|.|++|+.+++..++ .++..-+... .+....++++.+..+++.++. ..|
T Consensus 310 L~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~----~klr~i~a~~---~~~~~~v~d~~l~~~~~~~~~------r~G 376 (416)
T PF10923_consen 310 LAEEFFADDGFDNLRAPVIRLQPLTPEELLELL----EKLRDIYAEA---YGYESRVDDEELKAFAQHVAG------RLG 376 (416)
T ss_pred HhccccccccccCccCceecCCCCCHHHHHHHH----HHHHHHHHhh---CCCCCCCCHHHHHHHHHHHHh------ccC
Confidence 1134455544567899999999999888 3444444433 345578999999999999986 677
Q ss_pred cchh---HHHHHHHH
Q psy2392 563 ARRL---YTAMEKLL 574 (1165)
Q Consensus 563 AR~l---~~~ie~~l 574 (1165)
+.-- +.+|...+
T Consensus 377 ~~~~~tPR~~ik~fv 391 (416)
T PF10923_consen 377 GDVFVTPREFIKDFV 391 (416)
T ss_pred cccccCHHHHHHHHH
Confidence 7422 44555544
No 481
>KOG0480|consensus
Probab=96.95 E-value=0.00079 Score=81.37 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhh-hcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRR-QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r-~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
.-....|...|--.|.|.+.+|.-|.-.+.-...+ .+-.-++|. --|+|++|-||+||+-+-++.++.+...
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRG---Dinv~iVGDPgt~KSQfLk~v~~fsPR~ 405 (764)
T KOG0480|consen 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRG---DINVCIVGDPGTGKSQFLKAVCAFSPRS 405 (764)
T ss_pred chHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccC---CceEEEeCCCCccHHHHHHHHhccCCcc
Confidence 44456667777779999999999988777543211 110111222 3699999999999999999999888653
No 482
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0011 Score=69.41 Aligned_cols=70 Identities=31% Similarity=0.436 Sum_probs=48.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDR 896 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~ 896 (1165)
.++.|+|++|+||||+.++||+.++.+|+-.|. +.+. ..| ..+.++|+.- -....-.-+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~Ie~-~~g----~sI~eIF~~~------------GE~~FR~~E~~ 63 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--EIEK-RTG----MSIAEIFEEE------------GEEGFRRLETE 63 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--HHHH-HHC----cCHHHHHHHH------------hHHHHHHHHHH
Confidence 579999999999999999999999999987664 2222 222 3366666542 12224455777
Q ss_pred HHHhhcCCc
Q psy2392 897 VIDILVPSK 905 (1165)
Q Consensus 897 vv~~ll~~~ 905 (1165)
++..+++..
T Consensus 64 vl~~l~~~~ 72 (172)
T COG0703 64 VLKELLEED 72 (172)
T ss_pred HHHHHhhcC
Confidence 788787753
No 483
>KOG1970|consensus
Probab=96.92 E-value=0.022 Score=68.55 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE-Eeccccccccccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK-IEATKFTEVGYVGRD 263 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~-ld~s~~~~~GyvG~~ 263 (1165)
.-+||+||+||||||..+.||+++|..++. .+...+..+++.+..
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~ 156 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNE 156 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccccccc
Confidence 578999999999999999999999876654 333334445555443
No 484
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0026 Score=71.04 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|++... .++.||+.+|...- |.+||..+ .+|..+.|.+++|+-.
T Consensus 89 ~KV~II~~ae~m~~~-------------AaNaLLK~LEEPp~----------~t~fiLit----~~~~~lLpTI~SRCq~ 141 (261)
T PRK05818 89 KKIYIIYGIEKLNKQ-------------SANSLLKLIEEPPK----------NTYGIFTT----RNENNILNTILSRCVQ 141 (261)
T ss_pred CEEEEeccHhhhCHH-------------HHHHHHHhhcCCCC----------CeEEEEEE----CChHhCchHhhhheee
Confidence 469999999999987 67799999997543 34555543 4789999999999876
Q ss_pred EEEcCCC
Q psy2392 1098 RVELDSL 1104 (1165)
Q Consensus 1098 ~v~l~~l 1104 (1165)
+.|.++
T Consensus 142 -~~~~~~ 147 (261)
T PRK05818 142 -YVVLSK 147 (261)
T ss_pred -eecCCh
Confidence 578887
No 485
>PRK13947 shikimate kinase; Provisional
Probab=96.86 E-value=0.0009 Score=69.79 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=29.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
++++.||||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999876553
No 486
>PRK13947 shikimate kinase; Provisional
Probab=96.85 E-value=0.00086 Score=69.93 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
+++++||||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999987764
No 487
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.0098 Score=63.77 Aligned_cols=128 Identities=17% Similarity=0.261 Sum_probs=88.2
Q ss_pred HHHHhhhcCCCc---cccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccch
Q psy2392 369 IKTMFSVIGNHR---KKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISR 445 (1165)
Q Consensus 369 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~ 445 (1165)
...+...++++. =....++|.+++.++...... ...+-++||++|+++..
T Consensus 17 ~~~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~~~----------------~~~~k~iI~~a~~l~~~----------- 69 (206)
T PRK08485 17 KEELINEFGKKNLRFFIKEEFKIEDAKEVIAEAYIA----------------ESEEKIIVIAAPSYGIE----------- 69 (206)
T ss_pred HHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHhhC----------------CCCcEEEEEchHhhCHH-----------
Confidence 334555555544 012268899999888664421 12345668999999876
Q ss_pred hhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe------------eEecCCCCHHHHHH
Q psy2392 446 AGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI------------RVELDSLSISDFTR 513 (1165)
Q Consensus 446 ~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~------------~v~~~~L~~~~l~~ 513 (1165)
.++.||..+|. ...|++||..+ .+|..+.|.++||+.+ ...|++|+.+++..
T Consensus 70 --A~NaLLK~LEE----------Pp~~~~fiL~t----~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~ 133 (206)
T PRK08485 70 --AQNALLKILEE----------PPKNICFIIVA----KSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYE 133 (206)
T ss_pred --HHHHHHHHhcC----------CCCCeEEEEEe----CChHhCchHHHhhheeccccccccccccccccCCCCHHHHHH
Confidence 56699999996 45677777663 5788999999999975 57899999999988
Q ss_pred HHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 514 IMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 514 Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
.|+. +..+++ ...+++++.|+..+..
T Consensus 134 ~L~~------------~~ke~~--~~~~ea~~lIa~la~~ 159 (206)
T PRK08485 134 FLKE------------LEKENK--LSKEELKELIESLLKE 159 (206)
T ss_pred HHHH------------HHHccc--ccHHHHHHHHHHHHHH
Confidence 8841 223333 4566777777766643
No 488
>PRK03839 putative kinase; Provisional
Probab=96.78 E-value=0.0011 Score=70.08 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.0
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|+|+|||||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999887655
No 489
>PRK03839 putative kinase; Provisional
Probab=96.78 E-value=0.001 Score=70.30 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|+|+|||||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 5899999999999999999999998886655
No 490
>PRK00625 shikimate kinase; Provisional
Probab=96.77 E-value=0.001 Score=70.23 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
+++|+|+||||||++++.||+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 68999999999999999999999988877764
No 491
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.004 Score=65.17 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=43.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccc-----cccccChhhHHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV-----GYVGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~-----GyvG~~~~~~l~~lf~~a 873 (1165)
+..+.|.|.+|+||||+|.++.+.+ |...+.+|+..+... ||.-++....++.+-..|
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 4688999999999999999999988 788899998776542 454444444455554444
No 492
>PRK00625 shikimate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=69.89 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=28.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
+++|+|+|||||||+++.+|+.++.+|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999887765
No 493
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.73 E-value=0.0012 Score=67.19 Aligned_cols=31 Identities=45% Similarity=0.798 Sum_probs=27.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
+++|+||||||||++|+.+|+.++.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999998877544
No 494
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0017 Score=72.72 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..+++|+||||||||.||-+++..+ |..+.-+..++
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3799999999999999999999988 44444444443
No 495
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.70 E-value=0.0012 Score=67.26 Aligned_cols=31 Identities=45% Similarity=0.798 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+++++||||||||++|+.||+.++.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999988877555
No 496
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.65 E-value=0.0018 Score=79.39 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
++..|..+ ++++-..+-++.+..++...+. ... ...-+||+||||||||+++++||++++.....
T Consensus 11 ~ky~P~~~-----~eLavhkkKv~eV~~wl~~~~~-----~~~----~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 11 EKYAPKTL-----DELAVHKKKVEEVRSWLEEMFS-----GSS----PKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred hhcCCCCH-----HHhhccHHHHHHHHHHHHHHhc-----cCC----CcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 46666666 5566666667777888765321 111 12567889999999999999999999876654
No 497
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.60 E-value=0.0011 Score=66.67 Aligned_cols=31 Identities=39% Similarity=0.669 Sum_probs=25.7
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
++++|||||||||+|+.+++.++ ...++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHH
Confidence 68999999999999999999998 44455433
No 498
>PRK13949 shikimate kinase; Provisional
Probab=96.58 E-value=0.0017 Score=68.35 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
.+++++||||+|||++++.||+.++.+++..|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 378999999999999999999999988888773
No 499
>PRK13949 shikimate kinase; Provisional
Probab=96.58 E-value=0.0018 Score=68.15 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=29.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.+++|+||||+|||++++.||+.++.+|+..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999888766
No 500
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.57 E-value=0.0059 Score=63.42 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccc-----cccccChhhHHHHHHHHHHhhhhh------h
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV-----GYVGRDVDTIIRDLIDISIKQTRE------F 880 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~-----GyvG~~~~~~l~~lf~~a~~~~~~------~ 880 (1165)
++..++|.|.||+||||+|++|.+.+ +.+.+.+|+..+... ||.-++....++.+...|....+. .
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEec
Q psy2392 881 EINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 946 (1165)
Q Consensus 881 ~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~ 946 (1165)
.+++ -...|+..|+.+.++++ .+|+|..|
T Consensus 81 ~isp-----------------------------------~~~~R~~~R~~~~~~~f--~eVyv~~~ 109 (156)
T PF01583_consen 81 FISP-----------------------------------YREDREWARELIPNERF--IEVYVDCP 109 (156)
T ss_dssp ---------------------------------------SHHHHHHHHHHHHTTEE--EEEEEES-
T ss_pred eccC-----------------------------------chHHHHHHHHhCCcCce--EEEEeCCC
Done!